Query 005938
Match_columns 668
No_of_seqs 370 out of 2295
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 1.1E-24 3.9E-29 202.5 16.4 121 30-152 9-133 (134)
2 3gl9_A Response regulator; bet 99.9 6.3E-21 2.2E-25 168.5 16.8 116 34-151 3-121 (122)
3 3f6p_A Transcriptional regulat 99.9 5.8E-21 2E-25 167.9 16.0 116 34-151 3-118 (120)
4 3t6k_A Response regulator rece 99.9 1.5E-20 5.1E-25 169.1 17.7 119 33-153 4-125 (136)
5 3mm4_A Histidine kinase homolo 99.8 1.2E-20 4.2E-25 183.3 16.5 143 9-153 17-197 (206)
6 2lpm_A Two-component response 99.8 4.4E-23 1.5E-27 189.6 -0.8 114 31-150 6-120 (123)
7 2r25_B Osmosensing histidine p 99.8 1.9E-20 6.4E-25 167.8 16.1 119 33-151 2-126 (133)
8 3h1g_A Chemotaxis protein CHEY 99.8 1.3E-19 4.4E-24 160.9 17.1 118 33-151 5-126 (129)
9 3m6m_D Sensory/regulatory prot 99.8 1E-19 3.5E-24 165.3 16.6 120 31-152 12-136 (143)
10 2pl1_A Transcriptional regulat 99.8 2.7E-19 9.3E-24 155.3 18.5 118 34-153 1-119 (121)
11 1zgz_A Torcad operon transcrip 99.8 3.1E-19 1.1E-23 155.6 18.4 117 34-152 3-119 (122)
12 3r0j_A Possible two component 99.8 2E-19 6.9E-24 178.5 19.4 120 32-153 22-142 (250)
13 3gt7_A Sensor protein; structu 99.8 2E-19 6.9E-24 165.0 17.7 122 32-155 6-130 (154)
14 3crn_A Response regulator rece 99.8 2.8E-19 9.5E-24 159.3 17.8 119 33-153 3-122 (132)
15 2a9o_A Response regulator; ess 99.8 2.4E-19 8.2E-24 155.1 16.9 117 34-152 2-118 (120)
16 3rqi_A Response regulator prot 99.8 3.3E-20 1.1E-24 176.0 12.5 120 32-153 6-126 (184)
17 1dbw_A Transcriptional regulat 99.8 3E-19 1E-23 157.2 17.3 118 33-152 3-121 (126)
18 1xhf_A DYE resistance, aerobic 99.8 4.1E-19 1.4E-23 155.0 17.7 118 34-153 4-121 (123)
19 3hv2_A Response regulator/HD d 99.8 3.9E-19 1.3E-23 162.2 18.4 124 30-155 11-136 (153)
20 2qzj_A Two-component response 99.8 2.6E-19 8.9E-24 161.0 17.0 119 33-153 4-122 (136)
21 1a04_A Nitrate/nitrite respons 99.8 3.8E-19 1.3E-23 171.4 18.8 158 32-191 4-172 (215)
22 1i3c_A Response regulator RCP1 99.8 4.2E-19 1.4E-23 161.6 18.0 123 31-153 6-138 (149)
23 1zh2_A KDP operon transcriptio 99.8 3.7E-19 1.3E-23 154.1 16.3 118 34-153 2-119 (121)
24 3jte_A Response regulator rece 99.8 6.8E-19 2.3E-23 157.8 18.5 123 33-155 3-126 (143)
25 1srr_A SPO0F, sporulation resp 99.8 3.1E-19 1.1E-23 156.3 15.7 116 34-151 4-120 (124)
26 1tmy_A CHEY protein, TMY; chem 99.8 4.2E-19 1.4E-23 154.3 16.3 116 33-150 2-119 (120)
27 1jbe_A Chemotaxis protein CHEY 99.8 6.3E-19 2.2E-23 154.8 17.6 119 32-152 3-125 (128)
28 1p6q_A CHEY2; chemotaxis, sign 99.8 2.8E-19 9.7E-24 157.2 14.5 120 31-152 4-127 (129)
29 3hdg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 158.1 15.6 122 32-155 6-128 (137)
30 3h5i_A Response regulator/sens 99.8 1.3E-19 4.5E-24 163.0 12.5 123 32-155 4-127 (140)
31 3lua_A Response regulator rece 99.8 1.1E-19 3.9E-24 162.7 12.0 121 32-154 3-129 (140)
32 3q9s_A DNA-binding response re 99.8 2.2E-19 7.4E-24 179.6 15.1 154 33-188 37-197 (249)
33 1k68_A Phytochrome response re 99.8 8.9E-19 3E-23 154.7 17.3 122 33-154 2-133 (140)
34 3b2n_A Uncharacterized protein 99.8 5.9E-19 2E-23 157.4 16.2 119 33-153 3-124 (133)
35 4e7p_A Response regulator; DNA 99.8 5.3E-19 1.8E-23 160.8 16.1 122 30-153 17-141 (150)
36 3heb_A Response regulator rece 99.8 8.5E-19 2.9E-23 159.5 17.4 122 32-153 3-136 (152)
37 3kto_A Response regulator rece 99.8 1.9E-19 6.5E-24 161.2 12.8 121 32-154 5-128 (136)
38 3grc_A Sensor protein, kinase; 99.8 2.9E-19 9.8E-24 159.7 13.9 123 31-155 4-130 (140)
39 3kht_A Response regulator; PSI 99.8 7E-19 2.4E-23 158.3 16.6 122 32-155 4-131 (144)
40 3eod_A Protein HNR; response r 99.8 4E-19 1.4E-23 156.9 14.5 120 32-153 6-127 (130)
41 3hdv_A Response regulator; PSI 99.8 1.1E-18 3.9E-23 155.1 17.3 122 31-153 5-128 (136)
42 1yio_A Response regulatory pro 99.8 1.5E-19 5.3E-24 173.0 12.5 154 33-189 4-158 (208)
43 3ilh_A Two component response 99.8 1.2E-18 4.3E-23 155.6 17.5 120 31-152 7-139 (146)
44 1mb3_A Cell division response 99.8 4.8E-19 1.6E-23 154.4 14.4 116 34-151 2-120 (124)
45 1dz3_A Stage 0 sporulation pro 99.8 7.3E-19 2.5E-23 155.5 15.6 117 34-152 3-123 (130)
46 3cfy_A Putative LUXO repressor 99.8 7.9E-19 2.7E-23 158.0 16.0 118 34-153 5-123 (137)
47 3hzh_A Chemotaxis response reg 99.8 6.7E-19 2.3E-23 162.0 15.4 120 31-150 34-155 (157)
48 3cnb_A DNA-binding response re 99.8 1.8E-18 6.2E-23 154.0 17.7 121 31-153 6-131 (143)
49 3i42_A Response regulator rece 99.8 4.1E-19 1.4E-23 156.2 13.3 117 33-152 3-122 (127)
50 2zay_A Response regulator rece 99.8 9.3E-19 3.2E-23 157.6 15.9 122 31-154 6-130 (147)
51 3f6c_A Positive transcription 99.8 3.8E-19 1.3E-23 157.4 13.1 120 33-154 1-122 (134)
52 3nhm_A Response regulator; pro 99.8 8.5E-19 2.9E-23 155.0 15.4 119 32-154 3-124 (133)
53 1k66_A Phytochrome response re 99.8 1.7E-18 5.8E-23 154.8 17.1 122 32-153 5-139 (149)
54 1mvo_A PHOP response regulator 99.8 1.5E-18 5.3E-23 153.9 16.0 119 33-153 3-122 (136)
55 1s8n_A Putative antiterminator 99.8 9E-19 3.1E-23 167.9 15.6 121 31-153 11-132 (205)
56 3n0r_A Response regulator; sig 99.8 1.2E-19 4E-24 187.2 10.0 117 33-153 160-278 (286)
57 1kgs_A DRRD, DNA binding respo 99.8 1.6E-18 5.6E-23 167.4 17.2 120 33-154 2-122 (225)
58 3luf_A Two-component system re 99.8 1.4E-18 4.7E-23 175.5 17.2 123 32-155 123-248 (259)
59 3cg0_A Response regulator rece 99.8 2.8E-18 9.7E-23 152.6 16.8 121 32-154 8-130 (140)
60 4dad_A Putative pilus assembly 99.8 6.2E-19 2.1E-23 159.0 12.7 122 30-153 17-142 (146)
61 3eul_A Possible nitrate/nitrit 99.8 3.2E-18 1.1E-22 155.7 17.0 123 30-154 12-137 (152)
62 3snk_A Response regulator CHEY 99.8 1.3E-19 4.5E-24 161.7 7.5 120 31-152 12-133 (135)
63 2ayx_A Sensor kinase protein R 99.8 2.8E-18 9.6E-23 172.3 18.0 121 31-153 127-248 (254)
64 3kcn_A Adenylate cyclase homol 99.8 2.9E-18 9.8E-23 156.2 16.4 121 32-154 3-125 (151)
65 3n53_A Response regulator rece 99.8 7.4E-19 2.5E-23 157.4 12.2 120 33-155 3-125 (140)
66 2jba_A Phosphate regulon trans 99.8 3.8E-19 1.3E-23 155.7 9.9 117 34-152 3-122 (127)
67 3c3m_A Response regulator rece 99.8 2.5E-18 8.5E-23 154.3 15.1 117 34-152 4-123 (138)
68 3lte_A Response regulator; str 99.8 3.9E-18 1.3E-22 150.5 16.1 120 31-153 4-126 (132)
69 2rjn_A Response regulator rece 99.8 5.5E-18 1.9E-22 154.4 17.2 121 32-154 6-128 (154)
70 2qxy_A Response regulator; reg 99.8 3E-18 1E-22 153.4 14.8 120 32-154 3-123 (142)
71 3cg4_A Response regulator rece 99.8 1.4E-18 4.8E-23 155.2 12.4 121 32-154 6-129 (142)
72 2qr3_A Two-component system re 99.8 5.1E-18 1.7E-22 150.9 16.0 119 33-153 3-127 (140)
73 3dzd_A Transcriptional regulat 99.8 1.6E-18 5.6E-23 185.0 14.3 118 35-154 2-120 (368)
74 2oqr_A Sensory transduction pr 99.8 3.2E-18 1.1E-22 166.2 14.8 118 34-153 5-122 (230)
75 1dcf_A ETR1 protein; beta-alph 99.8 3.4E-18 1.2E-22 152.3 13.8 118 32-152 6-129 (136)
76 1ys7_A Transcriptional regulat 99.8 4.1E-18 1.4E-22 165.5 15.4 154 33-188 7-174 (233)
77 3cu5_A Two component transcrip 99.8 1.9E-18 6.5E-23 156.2 12.0 118 34-153 3-124 (141)
78 3a10_A Response regulator; pho 99.8 3E-18 1E-22 148.0 12.7 113 34-150 2-115 (116)
79 2gwr_A DNA-binding response re 99.8 2.7E-18 9.3E-23 168.9 13.9 153 34-188 6-168 (238)
80 2jk1_A HUPR, hydrogenase trans 99.8 1.5E-17 5E-22 149.1 16.9 117 34-153 2-120 (139)
81 3eq2_A Probable two-component 99.8 2.9E-18 1E-22 181.9 14.0 119 33-153 5-125 (394)
82 1qkk_A DCTD, C4-dicarboxylate 99.8 9.4E-18 3.2E-22 153.0 15.5 121 32-154 2-123 (155)
83 2qvg_A Two component response 99.8 1.3E-17 4.3E-22 149.2 15.9 120 32-151 6-134 (143)
84 3cz5_A Two-component response 99.8 1.1E-17 3.7E-22 152.4 15.2 120 32-153 4-126 (153)
85 3c3w_A Two component transcrip 99.8 8.4E-19 2.9E-23 171.7 8.3 156 34-191 2-167 (225)
86 3klo_A Transcriptional regulat 99.8 1E-18 3.5E-23 170.5 8.4 158 31-190 5-176 (225)
87 2gkg_A Response regulator homo 99.7 1.2E-17 4.2E-22 145.0 13.8 115 34-151 6-124 (127)
88 1ny5_A Transcriptional regulat 99.7 1.7E-17 5.7E-22 178.1 16.6 118 34-153 1-119 (387)
89 1p2f_A Response regulator; DRR 99.7 1.7E-17 5.9E-22 160.4 15.1 151 33-188 2-160 (220)
90 3kyj_B CHEY6 protein, putative 99.7 7.2E-18 2.5E-22 152.2 11.6 114 31-146 11-129 (145)
91 1w25_A Stalked-cell differenti 99.7 2E-17 7E-22 178.0 17.2 118 34-153 2-122 (459)
92 2qv0_A Protein MRKE; structura 99.7 5.1E-17 1.8E-21 145.6 16.9 120 32-155 8-130 (143)
93 2pln_A HP1043, response regula 99.7 5.4E-17 1.8E-21 144.7 15.8 117 30-152 15-133 (137)
94 2qsj_A DNA-binding response re 99.7 1.4E-17 4.6E-22 151.5 12.0 120 33-154 3-126 (154)
95 3c97_A Signal transduction his 99.7 1.7E-17 5.8E-22 148.8 12.0 116 33-153 10-131 (140)
96 2rdm_A Response regulator rece 99.7 6.5E-17 2.2E-21 142.3 15.3 118 33-153 5-124 (132)
97 3t8y_A CHEB, chemotaxis respon 99.7 4.5E-17 1.5E-21 151.4 15.0 118 31-150 23-153 (164)
98 3bre_A Probable two-component 99.7 2.6E-17 8.9E-22 170.8 14.6 117 33-151 18-138 (358)
99 2j48_A Two-component sensor ki 99.7 2.5E-17 8.6E-22 140.3 11.1 113 33-150 1-116 (119)
100 3eqz_A Response regulator; str 99.7 2E-17 6.9E-22 145.8 10.6 117 33-152 3-125 (135)
101 2hqr_A Putative transcriptiona 99.7 6.6E-17 2.2E-21 156.6 13.4 149 34-188 1-158 (223)
102 2b4a_A BH3024; flavodoxin-like 99.7 2.8E-17 9.6E-22 146.8 8.9 119 27-151 9-130 (138)
103 1qo0_D AMIR; binding protein, 99.7 3.5E-17 1.2E-21 155.8 9.8 115 32-153 11-126 (196)
104 3sy8_A ROCR; TIM barrel phosph 99.7 6.5E-17 2.2E-21 173.0 12.5 120 33-154 3-130 (400)
105 1dc7_A NTRC, nitrogen regulati 99.7 1.9E-18 6.4E-23 149.9 -2.0 118 34-153 4-122 (124)
106 1a2o_A CHEB methylesterase; ba 99.6 2.7E-15 9.1E-20 159.4 15.8 118 33-152 3-133 (349)
107 3luf_A Two-component system re 99.6 1.5E-15 5E-20 153.4 9.1 102 34-139 5-107 (259)
108 1irz_A ARR10-B; helix-turn-hel 99.6 2.8E-15 9.6E-20 123.3 6.4 62 217-283 2-63 (64)
109 2vyc_A Biodegradative arginine 99.5 8.5E-15 2.9E-19 169.8 9.6 119 34-153 1-134 (755)
110 3cwo_X Beta/alpha-barrel prote 99.0 3E-10 1E-14 109.8 6.0 92 58-151 6-100 (237)
111 3oou_A LIN2118 protein; protei 99.0 1.4E-10 4.8E-15 102.4 2.8 62 223-289 40-101 (108)
112 1w25_A Stalked-cell differenti 99.0 1.1E-08 3.7E-13 110.0 18.1 118 32-153 151-271 (459)
113 3oio_A Transcriptional regulat 99.0 1.4E-10 4.8E-15 103.2 2.3 62 223-289 42-103 (113)
114 2k9s_A Arabinose operon regula 99.0 1.6E-10 5.5E-15 101.8 2.7 62 223-289 39-100 (107)
115 3lsg_A Two-component response 99.0 2E-10 6.7E-15 100.4 2.7 62 223-289 38-99 (103)
116 3mn2_A Probable ARAC family tr 98.9 2.5E-10 8.6E-15 100.6 2.9 62 223-289 37-100 (108)
117 1bl0_A Protein (multiple antib 98.9 3.1E-10 1.1E-14 103.5 2.7 62 223-289 46-107 (129)
118 3mkl_A HTH-type transcriptiona 98.9 5.6E-10 1.9E-14 100.4 3.1 60 224-289 43-102 (120)
119 3gbg_A TCP pilus virulence reg 98.7 3.2E-09 1.1E-13 107.0 1.9 60 224-289 205-264 (276)
120 1d5y_A ROB transcription facto 98.6 1.8E-08 6E-13 102.2 2.7 63 222-289 37-99 (292)
121 4fe7_A Xylose operon regulator 98.5 2.5E-08 8.6E-13 106.2 2.5 63 222-289 339-401 (412)
122 1u8b_A ADA polyprotein; protei 96.9 0.00058 2E-08 62.0 4.0 50 234-289 73-123 (133)
123 2ayx_A Sensor kinase protein R 96.9 0.0014 4.9E-08 65.2 7.2 97 31-151 9-105 (254)
124 3n75_A LDC, lysine decarboxyla 96.4 0.0033 1.1E-07 72.9 6.8 104 45-152 18-123 (715)
125 3cwo_X Beta/alpha-barrel prote 95.9 0.039 1.3E-06 52.7 10.4 82 65-147 131-221 (237)
126 3q7r_A Transcriptional regulat 95.3 0.056 1.9E-06 48.4 8.1 101 35-152 14-118 (121)
127 2yxb_A Coenzyme B12-dependent 94.2 0.98 3.4E-05 42.6 14.3 119 32-153 17-146 (161)
128 2k9s_A Arabinose operon regula 90.8 0.14 4.8E-06 44.3 3.2 38 252-290 14-51 (107)
129 3mn2_A Probable ARAC family tr 90.8 0.15 5.3E-06 44.0 3.5 33 257-290 17-49 (108)
130 3q58_A N-acetylmannosamine-6-p 90.3 1.4 4.6E-05 44.1 10.3 99 33-135 101-210 (229)
131 3fkq_A NTRC-like two-domain pr 89.1 3.5 0.00012 43.4 12.9 106 32-152 20-128 (373)
132 3lsg_A Two-component response 88.9 0.37 1.3E-05 41.2 4.3 40 250-290 11-50 (103)
133 3oio_A Transcriptional regulat 88.8 0.19 6.6E-06 43.8 2.5 33 257-290 22-54 (113)
134 3igs_A N-acetylmannosamine-6-p 87.9 2.4 8.3E-05 42.3 10.1 98 33-134 101-209 (232)
135 1wv2_A Thiazole moeity, thiazo 87.6 3.2 0.00011 42.7 10.8 114 32-150 104-236 (265)
136 3oou_A LIN2118 protein; protei 87.1 0.58 2E-05 40.4 4.5 33 257-290 20-52 (108)
137 1ccw_A Protein (glutamate muta 84.3 12 0.00041 34.0 12.1 106 40-148 14-132 (137)
138 1bl0_A Protein (multiple antib 81.8 0.79 2.7E-05 41.0 3.0 33 257-290 26-58 (129)
139 2i2x_B MTAC, methyltransferase 80.2 18 0.00063 36.2 12.8 111 32-150 122-242 (258)
140 2l69_A Rossmann 2X3 fold prote 78.7 13 0.00046 32.8 9.6 46 36-81 5-50 (134)
141 1y80_A Predicted cobalamin bin 76.2 12 0.0004 36.1 9.6 97 33-134 88-196 (210)
142 1geq_A Tryptophan synthase alp 75.8 6.9 0.00024 38.4 8.0 54 94-147 68-127 (248)
143 3qja_A IGPS, indole-3-glycerol 74.8 32 0.0011 35.0 12.9 87 45-135 150-242 (272)
144 2htm_A Thiazole biosynthesis p 74.5 9.8 0.00033 39.2 8.8 103 44-151 112-228 (268)
145 1r8j_A KAIA; circadian clock p 74.0 37 0.0013 35.1 12.8 123 29-153 5-130 (289)
146 1xi3_A Thiamine phosphate pyro 73.9 21 0.00073 33.7 10.7 69 62-134 114-189 (215)
147 3mkl_A HTH-type transcriptiona 73.7 2.5 8.7E-05 37.0 3.8 32 257-290 22-53 (120)
148 2ekc_A AQ_1548, tryptophan syn 73.5 9.1 0.00031 38.6 8.3 70 80-149 45-143 (262)
149 1qop_A Tryptophan synthase alp 71.9 9.4 0.00032 38.5 8.0 70 80-149 45-143 (268)
150 1d5y_A ROB transcription facto 71.9 1.3 4.6E-05 44.1 1.7 34 256-290 17-50 (292)
151 4fo4_A Inosine 5'-monophosphat 71.2 32 0.0011 36.7 12.2 99 32-134 119-239 (366)
152 3ezx_A MMCP 1, monomethylamine 71.0 12 0.00043 36.6 8.5 99 32-135 91-203 (215)
153 3ffs_A Inosine-5-monophosphate 69.6 25 0.00085 38.0 11.1 99 33-134 156-274 (400)
154 2xij_A Methylmalonyl-COA mutas 69.0 33 0.0011 40.2 12.5 119 32-153 603-732 (762)
155 3f4w_A Putative hexulose 6 pho 68.9 59 0.002 30.7 12.6 113 32-147 76-204 (211)
156 1xrs_B D-lysine 5,6-aminomutas 68.3 42 0.0014 34.3 11.9 115 32-151 119-257 (262)
157 1xm3_A Thiazole biosynthesis p 68.2 16 0.00054 36.9 8.7 88 44-135 114-207 (264)
158 1yad_A Regulatory protein TENI 68.1 21 0.00072 34.4 9.3 69 62-134 116-191 (221)
159 3vnd_A TSA, tryptophan synthas 65.9 12 0.0004 38.3 7.3 55 95-149 83-144 (267)
160 3kp1_A D-ornithine aminomutase 65.5 26 0.00089 40.5 10.4 116 33-153 602-736 (763)
161 1req_A Methylmalonyl-COA mutas 64.4 47 0.0016 38.7 12.6 118 32-152 595-723 (727)
162 2q5c_A NTRC family transcripti 64.3 76 0.0026 30.5 12.4 55 31-85 2-57 (196)
163 2gjl_A Hypothetical protein PA 64.3 82 0.0028 32.2 13.4 75 57-134 118-200 (328)
164 3khj_A Inosine-5-monophosphate 63.1 34 0.0012 36.3 10.4 100 32-134 116-235 (361)
165 3o63_A Probable thiamine-phosp 62.2 49 0.0017 33.1 10.9 69 62-134 141-218 (243)
166 1ka9_F Imidazole glycerol phos 61.5 51 0.0018 32.0 10.8 78 67-146 155-242 (252)
167 2gek_A Phosphatidylinositol ma 61.5 37 0.0013 34.3 10.1 108 33-152 240-349 (406)
168 4dzz_A Plasmid partitioning pr 60.3 16 0.00056 33.7 6.6 53 32-87 29-83 (206)
169 2bfw_A GLGA glycogen synthase; 59.8 59 0.002 29.4 10.3 106 33-151 70-179 (200)
170 3fro_A GLGA glycogen synthase; 59.5 85 0.0029 31.8 12.4 107 32-151 284-394 (439)
171 1ep3_A Dihydroorotate dehydrog 55.4 30 0.001 34.8 8.1 104 44-149 151-290 (311)
172 3nav_A Tryptophan synthase alp 55.1 14 0.00047 37.9 5.5 55 94-148 84-145 (271)
173 2c6q_A GMP reductase 2; TIM ba 54.5 89 0.003 32.8 11.8 101 33-137 132-255 (351)
174 3qz6_A HPCH/HPAI aldolase; str 54.5 84 0.0029 31.6 11.2 99 49-149 6-110 (261)
175 3usb_A Inosine-5'-monophosphat 54.3 84 0.0029 34.7 12.1 101 32-135 267-388 (511)
176 2lci_A Protein OR36; structura 54.1 31 0.0011 30.4 6.7 36 40-75 84-119 (134)
177 1rd5_A Tryptophan synthase alp 53.9 18 0.00062 36.0 6.1 54 94-148 82-138 (262)
178 1ka9_F Imidazole glycerol phos 53.9 58 0.002 31.6 9.7 68 65-134 32-103 (252)
179 2w6r_A Imidazole glycerol phos 53.4 54 0.0018 32.2 9.4 68 66-135 158-229 (266)
180 1h5y_A HISF; histidine biosynt 53.0 75 0.0026 30.3 10.2 80 65-146 155-244 (253)
181 1ujp_A Tryptophan synthase alp 52.5 17 0.00058 37.0 5.7 55 95-149 80-140 (271)
182 3r2g_A Inosine 5'-monophosphat 52.4 1.8E+02 0.0061 30.9 13.7 98 32-134 111-227 (361)
183 2tps_A Protein (thiamin phosph 51.7 48 0.0017 31.6 8.6 69 62-134 122-199 (227)
184 1thf_D HISF protein; thermophI 51.6 1.1E+02 0.0038 29.6 11.3 78 66-145 153-240 (253)
185 3gbg_A TCP pilus virulence reg 51.5 9 0.00031 37.7 3.4 32 257-290 184-215 (276)
186 3bo9_A Putative nitroalkan dio 51.4 1.1E+02 0.0037 31.6 11.7 77 55-134 122-204 (326)
187 1y0e_A Putative N-acetylmannos 50.9 64 0.0022 30.7 9.3 72 61-135 124-204 (223)
188 1h5y_A HISF; histidine biosynt 50.8 70 0.0024 30.5 9.6 69 64-134 33-105 (253)
189 1geq_A Tryptophan synthase alp 50.6 79 0.0027 30.7 10.0 83 49-135 125-220 (248)
190 3iot_A Maltose-binding protein 50.6 2.9 9.9E-05 44.4 -0.4 54 34-87 7-64 (449)
191 3bw2_A 2-nitropropane dioxygen 50.3 1.1E+02 0.0039 31.8 11.8 75 57-134 145-236 (369)
192 3fwz_A Inner membrane protein 50.2 71 0.0024 28.2 8.9 94 32-134 29-124 (140)
193 1jcn_A Inosine monophosphate d 50.0 1.1E+02 0.0037 33.5 12.1 103 32-137 266-390 (514)
194 2w6r_A Imidazole glycerol phos 49.9 51 0.0017 32.4 8.6 69 65-135 31-103 (266)
195 4avf_A Inosine-5'-monophosphat 49.6 1E+02 0.0036 33.8 11.8 99 32-134 240-360 (490)
196 4adt_A Pyridoxine biosynthetic 49.2 95 0.0033 32.1 10.8 88 60-150 129-258 (297)
197 1rzu_A Glycogen synthase 1; gl 48.3 92 0.0032 32.6 10.8 108 33-151 320-439 (485)
198 2v5j_A 2,4-dihydroxyhept-2-ENE 48.0 1.8E+02 0.006 29.7 12.5 98 49-148 30-132 (287)
199 4fe7_A Xylose operon regulator 47.9 10 0.00036 39.7 3.3 34 256-290 319-352 (412)
200 1eep_A Inosine 5'-monophosphat 47.9 79 0.0027 33.5 10.3 88 44-134 180-284 (404)
201 3rht_A (gatase1)-like protein; 47.4 4.7 0.00016 41.1 0.6 50 33-86 4-57 (259)
202 2f9f_A First mannosyl transfer 47.3 1.4E+02 0.0049 26.8 10.7 107 33-152 50-162 (177)
203 3beo_A UDP-N-acetylglucosamine 47.0 1.2E+02 0.0043 30.0 11.1 59 80-151 283-341 (375)
204 2vws_A YFAU, 2-keto-3-deoxy su 46.7 2.1E+02 0.007 28.7 12.6 98 49-148 9-111 (267)
205 1qo2_A Molecule: N-((5-phospho 46.5 78 0.0027 30.7 9.2 78 65-145 145-239 (241)
206 1tqj_A Ribulose-phosphate 3-ep 45.9 32 0.0011 33.9 6.3 82 65-149 18-108 (230)
207 2d00_A V-type ATP synthase sub 44.5 1.4E+02 0.0048 26.2 9.7 76 33-114 3-80 (109)
208 1v4v_A UDP-N-acetylglucosamine 43.0 1.7E+02 0.0059 29.2 11.5 100 34-151 231-333 (376)
209 2qzs_A Glycogen synthase; glyc 42.8 1.2E+02 0.004 31.7 10.6 108 33-151 321-440 (485)
210 3duw_A OMT, O-methyltransferas 42.7 1.1E+02 0.0038 28.5 9.4 72 28-101 78-153 (223)
211 3c48_A Predicted glycosyltrans 42.6 1.2E+02 0.0041 31.0 10.4 108 33-151 276-390 (438)
212 2z6i_A Trans-2-enoyl-ACP reduc 41.6 1.1E+02 0.0039 31.4 10.0 76 56-134 109-190 (332)
213 3tdn_A FLR symmetric alpha-bet 41.3 71 0.0024 31.2 8.0 68 65-134 36-107 (247)
214 3ajx_A 3-hexulose-6-phosphate 41.2 23 0.00079 33.5 4.4 81 65-148 11-98 (207)
215 4fxs_A Inosine-5'-monophosphat 40.8 1.8E+02 0.0061 32.0 11.9 100 32-135 242-363 (496)
216 1vzw_A Phosphoribosyl isomeras 40.6 1.2E+02 0.004 29.4 9.4 78 65-144 147-237 (244)
217 1oyi_A Double-stranded RNA-bin 40.4 21 0.00072 30.4 3.4 35 248-283 20-54 (82)
218 2y88_A Phosphoribosyl isomeras 40.2 1.5E+02 0.0053 28.4 10.2 77 66-144 151-240 (244)
219 1qv9_A F420-dependent methylen 39.9 59 0.002 33.2 7.1 78 57-137 32-121 (283)
220 4had_A Probable oxidoreductase 39.8 2E+02 0.0069 29.1 11.5 109 30-151 20-135 (350)
221 3bul_A Methionine synthase; tr 39.2 1.1E+02 0.0037 34.7 10.0 101 33-135 98-211 (579)
222 3paj_A Nicotinate-nucleotide p 39.1 2.2E+02 0.0075 29.9 11.7 92 35-133 204-301 (320)
223 3c3y_A Pfomt, O-methyltransfer 39.0 1.2E+02 0.0041 29.2 9.2 70 30-101 92-167 (237)
224 1vgv_A UDP-N-acetylglucosamine 38.8 1.4E+02 0.0049 29.7 10.1 100 34-151 239-341 (384)
225 3ulq_B Transcriptional regulat 38.8 31 0.0011 29.1 4.3 40 248-288 35-76 (90)
226 3okp_A GDP-mannose-dependent a 38.6 73 0.0025 31.8 7.8 107 33-151 229-343 (394)
227 1sui_A Caffeoyl-COA O-methyltr 38.5 2.4E+02 0.0083 27.3 11.5 70 30-101 101-176 (247)
228 2v82_A 2-dehydro-3-deoxy-6-pho 38.5 64 0.0022 30.6 7.1 77 52-135 96-176 (212)
229 1thf_D HISF protein; thermophI 38.5 1.5E+02 0.005 28.7 9.8 69 65-135 31-103 (253)
230 2oo3_A Protein involved in cat 38.2 23 0.00078 36.7 4.0 70 32-101 112-182 (283)
231 1yxy_A Putative N-acetylmannos 38.1 1.2E+02 0.0043 29.0 9.2 83 47-134 122-214 (234)
232 3tr6_A O-methyltransferase; ce 37.8 1.1E+02 0.0037 28.5 8.5 72 28-101 84-160 (225)
233 2iw1_A Lipopolysaccharide core 37.7 1.4E+02 0.0046 29.6 9.6 106 33-151 228-336 (374)
234 1qop_A Tryptophan synthase alp 36.7 1.1E+02 0.0039 30.5 8.9 41 95-135 194-234 (268)
235 3llv_A Exopolyphosphatase-rela 36.7 1.2E+02 0.004 26.4 8.0 93 33-134 29-122 (141)
236 3dr5_A Putative O-methyltransf 36.5 46 0.0016 32.1 5.7 68 30-101 78-149 (221)
237 3kts_A Glycerol uptake operon 36.3 42 0.0014 32.8 5.3 62 67-134 117-178 (192)
238 2r60_A Glycosyl transferase, g 36.0 1.5E+02 0.0052 31.2 10.2 112 33-151 294-423 (499)
239 1rd5_A Tryptophan synthase alp 35.9 76 0.0026 31.4 7.4 42 94-135 189-230 (262)
240 3f4w_A Putative hexulose 6 pho 35.5 40 0.0014 31.9 5.1 83 65-149 11-99 (211)
241 3gnn_A Nicotinate-nucleotide p 35.3 2.4E+02 0.0082 29.3 11.1 65 61-132 214-278 (298)
242 2avd_A Catechol-O-methyltransf 35.3 1.4E+02 0.0047 27.9 8.8 72 28-101 89-165 (229)
243 2ewt_A BLDD, putative DNA-bind 34.8 30 0.001 26.5 3.3 33 249-281 12-45 (71)
244 3tsm_A IGPS, indole-3-glycerol 34.8 2E+02 0.0067 29.4 10.3 85 46-134 158-248 (272)
245 2xxa_A Signal recognition part 34.6 66 0.0023 34.8 7.1 53 33-87 129-191 (433)
246 3l0g_A Nicotinate-nucleotide p 34.5 1.9E+02 0.0065 30.1 10.2 66 60-132 211-276 (300)
247 3cbg_A O-methyltransferase; cy 34.0 1.4E+02 0.0047 28.6 8.7 71 29-101 93-168 (232)
248 2px0_A Flagellar biosynthesis 33.9 57 0.002 33.2 6.2 59 32-93 133-194 (296)
249 3ovp_A Ribulose-phosphate 3-ep 33.5 1.2E+02 0.0042 29.8 8.3 54 80-134 135-196 (228)
250 1dxe_A 2-dehydro-3-deoxy-galac 33.4 3.3E+02 0.011 26.9 11.6 98 49-148 10-112 (256)
251 3u81_A Catechol O-methyltransf 33.2 84 0.0029 29.6 6.9 62 29-90 79-145 (221)
252 3ffs_A Inosine-5-monophosphate 32.7 99 0.0034 33.3 8.0 65 67-134 146-211 (400)
253 4b8c_D Glucose-repressible alc 32.5 9.5 0.00032 43.8 0.0 6 428-433 73-78 (727)
254 1vrd_A Inosine-5'-monophosphat 32.1 2.8E+02 0.0096 30.0 11.7 100 32-134 248-368 (494)
255 4e38_A Keto-hydroxyglutarate-a 31.9 1.4E+02 0.0049 29.7 8.5 82 58-143 37-120 (232)
256 2l2q_A PTS system, cellobiose- 31.7 65 0.0022 27.9 5.3 78 31-114 2-84 (109)
257 3o07_A Pyridoxine biosynthesis 31.6 69 0.0024 33.3 6.2 59 94-152 186-251 (291)
258 4e5v_A Putative THUA-like prot 31.3 57 0.0019 33.3 5.6 79 32-114 3-94 (281)
259 3qhp_A Type 1 capsular polysac 31.3 1.5E+02 0.0052 25.8 7.9 106 32-151 31-139 (166)
260 3inp_A D-ribulose-phosphate 3- 31.1 75 0.0026 32.0 6.4 83 65-149 41-130 (246)
261 3tqv_A Nicotinate-nucleotide p 30.8 3.3E+02 0.011 28.1 11.2 66 60-132 202-267 (287)
262 1qdl_B Protein (anthranilate s 30.1 29 0.00099 32.8 3.0 50 34-85 1-51 (195)
263 3tfw_A Putative O-methyltransf 29.8 2.6E+02 0.0087 26.9 9.9 71 28-101 83-156 (248)
264 2xci_A KDO-transferase, 3-deox 29.6 87 0.003 32.4 6.8 50 97-151 295-345 (374)
265 2p10_A MLL9387 protein; putati 29.4 3.2E+02 0.011 28.3 10.8 76 58-136 165-260 (286)
266 3iwp_A Copper homeostasis prot 29.3 2.1E+02 0.0072 29.6 9.4 86 62-148 45-150 (287)
267 3l9w_A Glutathione-regulated p 29.1 87 0.003 33.6 6.9 93 32-134 26-121 (413)
268 2fhp_A Methylase, putative; al 29.0 2.8E+02 0.0097 24.5 9.5 68 34-101 68-138 (187)
269 1ypf_A GMP reductase; GUAC, pu 28.9 4.9E+02 0.017 26.7 13.7 97 34-134 121-238 (336)
270 2x6q_A Trehalose-synthase TRET 28.8 3.9E+02 0.013 27.0 11.5 106 33-151 262-378 (416)
271 3qq6_A HTH-type transcriptiona 28.7 35 0.0012 27.4 2.9 33 248-281 13-45 (78)
272 1p0k_A Isopentenyl-diphosphate 28.4 4.8E+02 0.016 26.7 12.3 88 45-135 166-280 (349)
273 2gjl_A Hypothetical protein PA 28.1 4E+02 0.014 27.0 11.5 62 65-135 84-145 (328)
274 3ot5_A UDP-N-acetylglucosamine 28.0 4.2E+02 0.014 27.6 11.9 100 34-151 258-360 (403)
275 3ceu_A Thiamine phosphate pyro 27.8 77 0.0026 30.4 5.6 69 61-134 93-171 (210)
276 1mu5_A Type II DNA topoisomera 27.2 11 0.00039 41.4 -0.5 100 1-102 113-244 (471)
277 3t76_A VANU, transcriptional r 27.0 37 0.0013 28.6 2.8 33 248-281 27-59 (88)
278 1rpx_A Protein (ribulose-phosp 26.9 1.7E+02 0.0059 28.0 8.0 57 93-149 55-114 (230)
279 3lab_A Putative KDPG (2-keto-3 26.9 1.4E+02 0.0047 29.7 7.3 81 60-143 18-99 (217)
280 2f6u_A GGGPS, (S)-3-O-geranylg 26.7 53 0.0018 32.9 4.3 58 67-134 23-83 (234)
281 1j8m_F SRP54, signal recogniti 26.7 26 0.0009 35.8 2.1 54 32-87 125-188 (297)
282 3tha_A Tryptophan synthase alp 26.6 48 0.0016 33.7 4.0 55 94-151 78-138 (252)
283 1izc_A Macrophomate synthase i 26.6 4.2E+02 0.014 27.7 11.4 83 65-149 51-139 (339)
284 3rc1_A Sugar 3-ketoreductase; 26.5 5.2E+02 0.018 26.2 13.7 104 33-150 27-137 (350)
285 2qfm_A Spermine synthase; sper 26.4 3.3E+02 0.011 28.9 10.7 68 34-101 212-296 (364)
286 2iuy_A Avigt4, glycosyltransfe 26.4 56 0.0019 32.4 4.5 107 33-151 188-307 (342)
287 1r69_A Repressor protein CI; g 26.2 42 0.0014 25.3 2.8 33 248-281 4-36 (69)
288 3s83_A Ggdef family protein; s 26.1 2.2E+02 0.0077 27.4 8.8 95 51-148 146-254 (259)
289 2a6c_A Helix-turn-helix motif; 26.1 52 0.0018 26.6 3.5 33 248-281 21-53 (83)
290 1zh8_A Oxidoreductase; TM0312, 26.1 5.2E+02 0.018 26.1 12.3 106 31-149 16-129 (340)
291 3vk5_A MOEO5; TIM barrel, tran 26.0 1.1E+02 0.0037 31.8 6.5 56 80-136 200-257 (286)
292 1zug_A Phage 434 CRO protein; 26.0 43 0.0015 25.5 2.8 33 248-281 6-38 (71)
293 2jt1_A PEFI protein; solution 25.9 39 0.0013 28.1 2.7 36 248-284 7-49 (77)
294 3u3x_A Oxidoreductase; structu 25.6 3.5E+02 0.012 27.8 10.6 104 33-149 26-135 (361)
295 1u8b_A ADA polyprotein; protei 25.5 15 0.00053 32.5 0.1 22 223-244 112-133 (133)
296 2hnk_A SAM-dependent O-methylt 25.4 2.8E+02 0.0096 26.2 9.2 70 30-101 82-167 (239)
297 3jr2_A Hexulose-6-phosphate sy 25.3 53 0.0018 31.7 3.9 84 64-149 16-105 (218)
298 1h1y_A D-ribulose-5-phosphate 25.2 50 0.0017 32.1 3.8 67 67-134 126-200 (228)
299 1jvn_A Glutamine, bifunctional 25.2 3.3E+02 0.011 30.2 10.9 77 67-146 455-543 (555)
300 1viz_A PCRB protein homolog; s 25.2 88 0.003 31.4 5.6 54 67-134 23-83 (240)
301 2cvh_A DNA repair and recombin 25.0 62 0.0021 29.9 4.3 99 14-115 29-155 (220)
302 1ws6_A Methyltransferase; stru 24.6 2.7E+02 0.0092 24.2 8.3 67 35-102 65-132 (171)
303 3omt_A Uncharacterized protein 24.5 24 0.00083 27.5 1.1 33 248-281 11-43 (73)
304 3khj_A Inosine-5-monophosphate 24.5 3.4E+02 0.012 28.5 10.3 65 67-134 107-172 (361)
305 1jhf_A LEXA repressor; LEXA SO 24.5 40 0.0014 31.8 2.9 33 251-283 16-50 (202)
306 2kpj_A SOS-response transcript 24.4 63 0.0022 26.5 3.8 32 248-280 12-43 (94)
307 3nav_A Tryptophan synthase alp 24.2 1.7E+02 0.0059 29.7 7.7 101 33-136 125-238 (271)
308 2jjm_A Glycosyl transferase, g 24.1 1.3E+02 0.0045 30.3 6.9 65 80-151 285-349 (394)
309 3ec7_A Putative dehydrogenase; 24.1 4.5E+02 0.015 26.8 11.1 106 33-151 23-136 (357)
310 3dm5_A SRP54, signal recogniti 24.1 95 0.0032 33.9 6.0 54 32-87 127-190 (443)
311 1wa3_A 2-keto-3-deoxy-6-phosph 24.0 3.8E+02 0.013 24.9 9.7 79 62-144 17-98 (205)
312 3l4e_A Uncharacterized peptida 23.9 2.7E+02 0.0094 26.8 8.8 62 33-102 27-98 (206)
313 3c57_A Two component transcrip 23.6 92 0.0031 26.1 4.7 40 248-288 33-74 (95)
314 3euw_A MYO-inositol dehydrogen 23.5 5.7E+02 0.02 25.6 12.7 104 33-149 4-112 (344)
315 3q2i_A Dehydrogenase; rossmann 23.4 5.7E+02 0.019 25.8 11.6 107 32-151 12-124 (354)
316 2al1_A Enolase 1, 2-phospho-D- 23.4 97 0.0033 33.7 5.9 72 65-139 274-349 (436)
317 1tqx_A D-ribulose-5-phosphate 23.3 1.4E+02 0.005 29.4 6.7 82 52-135 109-201 (227)
318 1ujp_A Tryptophan synthase alp 23.2 1.4E+02 0.0046 30.3 6.7 39 95-135 191-229 (271)
319 1fse_A GERE; helix-turn-helix 23.2 1E+02 0.0036 23.6 4.7 24 248-272 17-40 (74)
320 3tqv_A Nicotinate-nucleotide p 23.1 1.6E+02 0.0054 30.5 7.2 67 81-149 170-239 (287)
321 1x57_A Endothelial differentia 23.1 76 0.0026 25.8 4.0 33 248-281 16-48 (91)
322 3p9n_A Possible methyltransfer 23.1 2.9E+02 0.0099 24.9 8.5 67 34-102 68-138 (189)
323 2b5a_A C.BCLI; helix-turn-heli 23.0 52 0.0018 25.5 2.8 31 249-280 14-44 (77)
324 1je8_A Nitrate/nitrite respons 22.9 1E+02 0.0035 25.0 4.7 24 248-272 27-50 (82)
325 1gox_A (S)-2-hydroxy-acid oxid 22.9 2.8E+02 0.0096 29.1 9.3 85 47-134 215-308 (370)
326 3mz0_A Inositol 2-dehydrogenas 22.8 5.9E+02 0.02 25.6 12.5 105 34-150 3-114 (344)
327 2r1j_L Repressor protein C2; p 22.7 41 0.0014 25.2 2.1 33 248-281 8-40 (68)
328 3jy6_A Transcriptional regulat 22.6 3.2E+02 0.011 25.9 9.1 65 44-115 24-94 (276)
329 1y7y_A C.AHDI; helix-turn-heli 22.6 54 0.0018 25.1 2.8 31 249-280 17-47 (74)
330 3s8q_A R-M controller protein; 22.5 52 0.0018 26.1 2.8 31 249-280 15-45 (82)
331 3ctl_A D-allulose-6-phosphate 22.3 1.6E+02 0.0054 29.1 6.8 81 65-149 14-102 (231)
332 2xi8_A Putative transcription 22.2 38 0.0013 25.3 1.8 32 249-281 5-36 (66)
333 1h6d_A Precursor form of gluco 22.2 3.7E+02 0.013 28.5 10.2 108 32-150 82-198 (433)
334 2o8x_A Probable RNA polymerase 22.1 87 0.003 23.8 4.0 27 248-274 21-47 (70)
335 1g5t_A COB(I)alamin adenosyltr 22.0 1.8E+02 0.0063 28.2 7.1 57 67-123 106-169 (196)
336 3ic5_A Putative saccharopine d 22.0 3E+02 0.01 22.3 7.7 89 33-131 5-96 (118)
337 3c6k_A Spermine synthase; sper 21.9 1.6E+02 0.0054 31.6 7.1 56 34-89 229-294 (381)
338 2w7n_A TRFB transcriptional re 21.9 83 0.0028 27.7 4.1 53 229-283 6-58 (101)
339 2fpo_A Methylase YHHF; structu 21.7 2.6E+02 0.0089 25.9 8.0 65 35-102 79-145 (202)
340 2fli_A Ribulose-phosphate 3-ep 21.7 66 0.0023 30.5 3.8 101 33-134 84-197 (220)
341 4fxs_A Inosine-5'-monophosphat 21.7 1.9E+02 0.0063 31.8 7.9 54 80-134 244-299 (496)
342 3axs_A Probable N(2),N(2)-dime 21.6 2.7E+02 0.0093 29.7 8.9 76 34-115 78-159 (392)
343 1qpo_A Quinolinate acid phosph 21.6 4.7E+02 0.016 26.7 10.4 69 60-133 198-267 (284)
344 1jcn_A Inosine monophosphate d 21.5 2.3E+02 0.0079 30.9 8.6 65 67-134 257-323 (514)
345 1qbj_A Protein (double-strande 21.5 51 0.0018 27.6 2.6 35 248-283 13-51 (81)
346 2pyy_A Ionotropic glutamate re 21.4 2.1E+02 0.0073 25.5 7.1 49 32-87 111-159 (228)
347 1jub_A Dihydroorotate dehydrog 21.4 2.3E+02 0.0078 28.5 8.0 65 68-134 110-191 (311)
348 2yxd_A Probable cobalt-precorr 21.4 4E+02 0.014 23.1 10.7 72 32-111 56-129 (183)
349 2dul_A N(2),N(2)-dimethylguano 21.3 2.8E+02 0.0097 29.1 9.0 76 34-115 72-165 (378)
350 2ffh_A Protein (FFH); SRP54, s 21.3 61 0.0021 35.1 3.9 55 31-87 124-188 (425)
351 2b8t_A Thymidine kinase; deoxy 21.1 27 0.00093 34.5 0.9 80 32-113 39-123 (223)
352 1x3u_A Transcriptional regulat 21.1 1.2E+02 0.0041 23.7 4.7 24 248-272 22-45 (79)
353 3snr_A Extracellular ligand-bi 20.9 2.7E+02 0.0092 27.3 8.3 81 35-119 137-229 (362)
354 3l0g_A Nicotinate-nucleotide p 20.8 2.2E+02 0.0074 29.7 7.7 52 96-149 196-248 (300)
355 2vxz_A Pyrsv_GP04; viral prote 20.7 62 0.0021 30.8 3.2 36 248-283 14-51 (165)
356 3moi_A Probable dehydrogenase; 20.7 5E+02 0.017 26.8 10.7 47 105-151 63-113 (387)
357 1qb3_A Cyclin-dependent kinase 20.6 21 0.00072 33.6 0.0 31 323-353 46-77 (150)
358 1lst_A Lysine, arginine, ornit 20.6 2.2E+02 0.0074 26.0 7.1 53 32-87 110-162 (239)
359 4fo4_A Inosine 5'-monophosphat 20.5 4.2E+02 0.015 28.0 10.1 65 67-134 110-176 (366)
360 2pju_A Propionate catabolism o 20.3 6.1E+02 0.021 24.8 13.8 123 27-151 6-152 (225)
361 3qja_A IGPS, indole-3-glycerol 20.3 2.3E+02 0.008 28.6 7.7 55 95-149 102-158 (272)
362 3c0k_A UPF0064 protein YCCW; P 20.3 2.5E+02 0.0086 29.2 8.3 54 34-87 244-301 (396)
363 4avf_A Inosine-5'-monophosphat 20.2 2.5E+02 0.0085 30.7 8.5 65 67-134 231-297 (490)
364 3f6w_A XRE-family like protein 20.2 47 0.0016 26.3 2.1 31 250-281 19-49 (83)
365 2auw_A Hypothetical protein NE 20.2 47 0.0016 31.9 2.3 26 246-271 91-116 (170)
366 2akz_A Gamma enolase, neural; 20.1 1.2E+02 0.0041 33.0 5.8 77 65-144 271-351 (439)
367 2xzm_U Ribosomal protein L7AE 20.0 3.5E+02 0.012 24.3 8.1 74 38-113 1-74 (126)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=1.1e-24 Score=202.45 Aligned_cols=121 Identities=29% Similarity=0.577 Sum_probs=112.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---C
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---M 105 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~ 105 (668)
+.+++|||||||++..|+.++.+|+..||. |.+|.++.+|+++++... ||+||+|++||+|||+|++++||.. +
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 467799999999999999999999999986 778999999999999876 9999999999999999999999843 5
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|||++|++.+.+.+.+|++.||++||.||++.++|...+++++++
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999987653
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=6.3e-21 Score=168.48 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999753 579999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=5.8e-21 Score=167.91 Aligned_cols=116 Identities=30% Similarity=0.488 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+..+.....++++.||++||.||++.++|..+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988765
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.85 E-value=1.5e-20 Score=169.08 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=111.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IPV 109 (668)
..+||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998876 999999999999999999999975 357999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 5
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.85 E-value=1.2e-20 Score=183.30 Aligned_cols=143 Identities=28% Similarity=0.433 Sum_probs=108.3
Q ss_pred HHcCC-------CCCCCccccccccC-------------CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHH
Q 005938 9 QSSGG-------SGYGSSRAADVAVP-------------DQFPAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAA 67 (668)
Q Consensus 9 ~~~gG-------s~~~~~~~~d~~~~-------------e~fP~girVLIVDDDp~ire~Lk~lL~~~gy-~V~tasng~ 67 (668)
-+||| .|.|++|++.+... .....+++||||||++..+..++.+|+..+| .|..+.++.
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~ 96 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGK 96 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHH
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHH
Confidence 46888 27788887665541 1123568999999999999999999999998 899999999
Q ss_pred HHHHHHHHc-----------CCCceEEEEeCCCCCCCHHHHHHHHhc-----cCCCcEEEEeccC-CHHHHHHHHHcCCc
Q 005938 68 VALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLEHIGL-----EMDLPVIMMSADG-RVSAVMRGIRHGAC 130 (668)
Q Consensus 68 EALelLre~-----------~~~PDLVIlDI~MPdmDG~ELLe~Ir~-----~~~IPVIILSa~s-d~e~a~kAl~~GA~ 130 (668)
+|++.++.. ...|||||+|+.||++||++++++|+. .+.+|||++|++. +.+.+.++++.||+
T Consensus 97 eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~ 176 (206)
T 3mm4_A 97 EALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMD 176 (206)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence 999999875 123999999999999999999999985 3789999999998 88889999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHHHHh
Q 005938 131 DYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 131 dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+||.||++ +|..+++++++++
T Consensus 177 ~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 177 AFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp EEEETTCT--THHHHHHHHC---
T ss_pred EEEcCcHH--HHHHHHHHHHhhh
Confidence 99999999 8999998887654
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=4.4e-23 Score=189.56 Aligned_cols=114 Identities=26% Similarity=0.388 Sum_probs=102.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
...+|||||||++.++..++.+|+..||.|. +|.++.+|+++++... ||+||+|++||+|||++++++|++ .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 3568999999999999999999999999975 7999999999999876 999999999999999999999986 57999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
|++|++++.... .+.|+.+||.|||+.++|..+++++.
T Consensus 83 I~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 83 IFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 999999876543 46799999999999999999887654
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=1.9e-20 Score=167.83 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy-~V~tasng~EALelLre~---~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~ 106 (668)
.++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||++||++++++|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999998887 588999999999998761 123999999999999999999999975 357
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+|||++|++.+.+.+.++++.||++||.||++.++|..++++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988754
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=1.3e-19 Score=160.90 Aligned_cols=118 Identities=29% Similarity=0.554 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
.+|||||||++..+..++.+|+..+|. |..+.++.+|++.+.... .||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999998985 889999999999887652 49999999999999999999999753 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
||++|++.+...+.++++.||++||.||++.++|..+++.++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.83 E-value=1e-19 Score=165.27 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=106.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-----~~ 105 (668)
...++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 35689999999999999999999999999999999999999998765 999999999999999999999973 25
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+|||++|+..+.+.+.++++.||++||.||++.++|..++.++...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 10
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.7e-19 Score=155.31 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
++||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999974 468999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887653
No 11
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=3.1e-19 Score=155.56 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999877789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 12
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2e-19 Score=178.52 Aligned_cols=120 Identities=33% Similarity=0.531 Sum_probs=113.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
..++||||||++..+..|+.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+. .+.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999998876 999999999999999999999985 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998764
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=2e-19 Score=164.99 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=113.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3579999999999999999999999999999999999999998765 9999999999999999999999854 6899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
||++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887543
No 14
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=2.8e-19 Score=159.33 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 368999999999999999999988999999999999999998765 999999999999999999999974 57899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988754
No 15
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=2.4e-19 Score=155.07 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 48999999999999999999998999999999999999998776 9999999999999999999999877889999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887653
No 16
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=3.3e-20 Score=175.99 Aligned_cols=120 Identities=21% Similarity=0.354 Sum_probs=111.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+++||||||++..+..++.+|...+|.|.+|.++.+|++.++... ||+||+|+.||++||++++++|+. .+++|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999999999999999999999998765 999999999999999999999974 5789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|++.+.+.+.+|++.||++||.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876654
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=3e-19 Score=157.23 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
..+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999988999999999999999987655 999999999999999999999975 46899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|++.+.+.+.++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987653
No 18
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=4.1e-19 Score=155.00 Aligned_cols=118 Identities=20% Similarity=0.413 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
.+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++++..+.+|+|++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999866789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887653
No 19
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.82 E-value=3.9e-19 Score=162.22 Aligned_cols=124 Identities=27% Similarity=0.437 Sum_probs=115.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
....++||||||++..+..++.+|...+|.|..+.++.+|++.+.... |||||+|+.||+++|++++++|+. .+.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 345689999999999999999999999999999999999999998876 999999999999999999999974 47899
Q ss_pred EEEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 109 VIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~G-A~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
||++|+..+.+.+.++++.| |++||.||++.++|..+++++++++..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999 999999999999999999999876543
No 20
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2.6e-19 Score=160.95 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=111.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIIL 112 (668)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 479999999999999999999988999999999999999998765 999999999999999999999986568999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654
No 21
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.82 E-value=3.8e-19 Score=171.44 Aligned_cols=158 Identities=17% Similarity=0.289 Sum_probs=127.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
..++||||||++..+..++.+|... ++.+ ..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 4579999999999999999999986 4877 78999999999998876 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccccc--------ccCCcccccccCCCchhHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------NSGSLEETDHHKRGSDEIE 180 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e--------~~~~le~~d~~klt~~Eie 180 (668)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++......... ............++.+|.+
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 161 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 161 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999876432111100 0000001122346788888
Q ss_pred HHhhhccCCcc
Q 005938 181 YASSVNEGTEG 191 (668)
Q Consensus 181 ~lssv~eg~e~ 191 (668)
++..+.++...
T Consensus 162 vl~~l~~g~s~ 172 (215)
T 1a04_A 162 ILKLIAQGLPN 172 (215)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHcCCCH
Confidence 88887777543
No 22
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.82 E-value=4.2e-19 Score=161.64 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=110.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc-----CCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~-----~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
...++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3458999999999999999999998776 788999999999998752 124999999999999999999999975
Q ss_pred c---CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 104 ~---~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 5789999999999999999999999999999999999999999987654
No 23
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=3.7e-19 Score=154.12 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++||||||++..+..++.+|...+|.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 68999999999999999999998999999999999999888765 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887653
No 24
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=6.8e-19 Score=157.82 Aligned_cols=123 Identities=26% Similarity=0.464 Sum_probs=113.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..++.+|...++.|..+.++.+|++.+......||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999999999999999999999999853335999999999999999999999974 57899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
+|+..+.+.+.++++.||++||.||++.++|..+++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886543
No 25
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.81 E-value=3.1e-19 Score=156.30 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999998999999999999999998776 999999999999999999999975 578999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987653
No 26
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.81 E-value=4.2e-19 Score=154.30 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=107.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.++... ||+||+|+.||+++|+++++++++ .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999988998 568999999999998876 999999999999999999999974 4789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
++|+..+.+...++++.||++||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 27
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=6.3e-19 Score=154.82 Aligned_cols=119 Identities=32% Similarity=0.546 Sum_probs=109.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~I 107 (668)
+.++||||||++..+..++.+|...+| .|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457999999999999999999998888 7899999999999987654 999999999999999999999985 3578
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|||++|+..+.+.+.++++.||++||.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 28
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=2.8e-19 Score=157.24 Aligned_cols=120 Identities=27% Similarity=0.468 Sum_probs=110.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~ 106 (668)
...++||||||++..+..++.+|...+| .|..+.++.+|++.++... ||+||+|+.||+++|++++++|+.. +.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 3457999999999999999999998888 7889999999999998765 9999999999999999999999853 57
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|||++|+..+.+.+.++++.||++||.||++.++|..++++++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999987653
No 29
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=4.2e-19 Score=158.09 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=113.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
..++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4589999999999999999999998999999999999999999876 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887543
No 30
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.3e-19 Score=162.99 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=111.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~~~~IPVI 110 (668)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999862 23999999999995 9999999999877899999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 999999988888999999999999999999999999999886543
No 31
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.81 E-value=1.1e-19 Score=162.69 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=112.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCC-CCCHHHHHHHHhc---cC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~-~gy~V~tasng~EALelLre-~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~---~~ 105 (668)
..++||||||++..+..|+.+|.. .+|.|..+.++.+|++.++. .. ||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 457999999999999999999999 89999999999999999987 55 99999999999 9999999999975 57
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
.+|||++|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999886653
No 32
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.81 E-value=2.2e-19 Score=179.64 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=127.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIIL 112 (668)
.++||||||++..+..|+.+|...+|.|..+.++.+|++.+.... |||||+|+.||++||++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 479999999999999999999999999999999999999998876 999999999999999999999988788999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----cC--CcccccccCCCchhHHHHhhh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SG--SLEETDHHKRGSDEIEYASSV 185 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~-----~~--~le~~d~~klt~~Eie~lssv 185 (668)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.......... .. .........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764321110000 00 001112234778888888777
Q ss_pred ccC
Q 005938 186 NEG 188 (668)
Q Consensus 186 ~eg 188 (668)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 655
No 33
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=8.9e-19 Score=154.69 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=111.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~-----~~PDLVIlDI~MPdmDG~ELLe~Ir~~- 104 (668)
+++||||||++..+..++.+|...++ .|..+.++.+|++.+.... ..||+||+|+.||+++|++++++|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 8999999999999998610 249999999999999999999999854
Q ss_pred --CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 105 --~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987653
No 34
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.81 E-value=5.9e-19 Score=157.38 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.++||||||++..+..++.+|+..+ +.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 3689999999999999999999765 56788999999999998876 999999999999999999999975 468999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887543
No 35
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.81 E-value=5.3e-19 Score=160.82 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=111.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~ 106 (668)
...++|||||||++..+..|+.+|...+ +.|..+.++.+|++.++... |||||+|+.||+++|+++++.|+. .+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3456899999999999999999999876 78999999999999998765 999999999999999999999974 578
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999988764
No 36
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.81 E-value=8.5e-19 Score=159.47 Aligned_cols=122 Identities=23% Similarity=0.407 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre-------~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999988 89999999999999961 123599999999999999999999997
Q ss_pred c---cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 103 ~---~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
. .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 36799999999999999999999999999999999999999999986543
No 37
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=1.9e-19 Score=161.20 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=111.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~-~~~IP 108 (668)
..++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+ ++|++++++|+. .+.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 4579999999999999999999999999999999999999887655 999999999999 999999999974 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
||++|+..+.+.+.++++.||++||.||++.++|..++++++....
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999987754
No 38
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=2.9e-19 Score=159.73 Aligned_cols=123 Identities=24% Similarity=0.390 Sum_probs=112.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~I 107 (668)
...++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCC
Confidence 34579999999999999999999999999999999999999998876 999999999999999999999975 4689
Q ss_pred cEEEEeccCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 108 PVIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 108 PVIILSa~sd~e~a~-kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
|||++|+..+.+... ++++.||++||.||++.++|..++++++++...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 82 AIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999988887777 899999999999999999999999999887643
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.80 E-value=7e-19 Score=158.28 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~--V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~ 106 (668)
.+++||||||++..+..++.+|...++. |..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 3579999999999999999999998887 889999999999998765 999999999999999999999985 468
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHhhc
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRWN 155 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vlrk~~~ 155 (668)
+|||++|+..+.+.+.++++.||++||.||+ +.++|..++++++++...
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999887543
No 40
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=4e-19 Score=156.85 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+++||||||++..+..++.+|...+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4579999999999999999999999999999999999999997665 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vlrk~ 153 (668)
++|+..+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999987654
No 41
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.80 E-value=1.1e-18 Score=155.09 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=110.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~--~~IP 108 (668)
+...+||||||++..+..++.+|...+|.|..+.++.+|+..+.... .||+||+|+.||+++|++++++|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 44689999999999999999999999999999999999999988642 49999999999999999999999854 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
||++|+..+.+...++++.||++||.||++.++|..+++++....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999887654
No 42
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.80 E-value=1.5e-19 Score=172.96 Aligned_cols=154 Identities=23% Similarity=0.373 Sum_probs=124.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
..+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||+++++.|+. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999998999999999999999887654 999999999999999999999975 47899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCC
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 189 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~le~~d~~klt~~Eie~lssv~eg~ 189 (668)
+|++.+.+.+.++++.||++||.||++.++|..+++++++............. ........++.+|.+++..+.++.
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~Lt~rE~~vl~~l~~g~ 158 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQD-QLEQLFSSLTGREQQVLQLTIRGL 158 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHTTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999998999999999999999999999999999998875432211100000 001112346677777777766553
No 43
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.2e-18 Score=155.56 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-----cCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre-----~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
.+.++||||||++..+..++.+|...++ .|..+.++.+|++.++. .. ||+||+|+.||+++|++++++|+.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999999998 89999999999999987 54 999999999999999999999975
Q ss_pred -----cCCCcEEEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 104 -----EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 104 -----~~~IPVIILSa~sd~e~a~kAl~~G-A~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.+.+|||++|+..+.+...+++..| |++||.||++.++|..+++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999999999987654
No 44
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=4.8e-19 Score=154.40 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
.+||||||++..+..++.+|...+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999998999999999999999998776 9999999999999999999999753 578999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
++|++.+.+...++++.||++||.||++.++|..+++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999988888999999999999999999999999988764
No 45
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=7.3e-19 Score=155.52 Aligned_cols=117 Identities=28% Similarity=0.477 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPV 109 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~-gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPV 109 (668)
++||||||++..+..++.+|... ++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 68999999999999999999987 78765 8999999999998776 999999999999999999999975 367889
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988754
No 46
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=7.9e-19 Score=157.99 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 38999999999999999999988999999999999999998876 999999999999999999999975 467999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=6.7e-19 Score=161.99 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=110.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
...++||||||++..+..|+.+|...+|.+. .+.++.+|++.++.....|||||+|+.||+++|++++++|+. .+.+|
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCc
Confidence 3457999999999999999999999999988 999999999999887212899999999999999999999974 57899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
||++|+..+.+.+.++++.||++||.||++.++|..++++++
T Consensus 114 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 114 VIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred EEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998765
No 48
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.8e-18 Score=153.99 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=111.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM 105 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~-~gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~ 105 (668)
..+++||||||++..+..++.+|.. .+|. |..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 4568999999999999999999998 8999 999999999999998876 999999999999999999999975 46
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
.+|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999998764
No 49
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=4.1e-19 Score=156.17 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=106.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IPV 109 (668)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998876 999999999999999999999985 478999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
|++|+..+.+. .+++..||++||.||++.++|...+++..+.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999998887 8899999999999999999999999887554
No 50
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.80 E-value=9.3e-19 Score=157.65 Aligned_cols=122 Identities=18% Similarity=0.370 Sum_probs=113.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~I 107 (668)
...++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999998999999999999999999876 999999999999999999999985 4689
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
|||++|+..+.+...++++.||++||.||++.++|..+++++++...
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987653
No 51
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.80 E-value=3.8e-19 Score=157.41 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+|||||||++..+..++.+|...++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999999876 999999999999999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999999999999886643
No 52
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.80 E-value=8.5e-19 Score=154.98 Aligned_cols=119 Identities=26% Similarity=0.348 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
..++||||||++..+..++.+|+ .+|.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.. +.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 45799999999999999999999 7899999999999999998876 9999999999999999999999853 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
||++|+..+.+. .++++.||++||.||++.++|..++++++++..
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 999999988777 899999999999999999999999999988764
No 53
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.7e-18 Score=154.83 Aligned_cols=122 Identities=23% Similarity=0.378 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC--------CCceEEEEeCCCCCCCHHHHHHHH
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~--------~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
.+++||||||++..+..++.+|...++ .|..+.++.+|++.++... ..||+||+|+.||+++|++++++|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 457899999999999999999999888 8999999999999998610 249999999999999999999999
Q ss_pred hcc---CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 102 r~~---~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++..
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 864 6799999999999999999999999999999999999999999998765
No 54
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.79 E-value=1.5e-18 Score=153.89 Aligned_cols=119 Identities=28% Similarity=0.501 Sum_probs=110.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVII 111 (668)
+.+||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 368999999999999999999998999999999999999998776 9999999999999999999999754 6799999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998888899999999999999999999999999887653
No 55
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=9e-19 Score=167.93 Aligned_cols=121 Identities=26% Similarity=0.370 Sum_probs=112.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
+..++||||||++..+..++.+|...+|.|. .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+.....||
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSCE
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCE
Confidence 3447999999999999999999999899988 8999999999998876 999999999999999999999986656799
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++|++.+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 89 i~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 56
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.2e-19 Score=187.16 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=108.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~~~~IPVI 110 (668)
+.+||||||++.++..++.+|+..||.|. .|.++.+|++.+.... |||||+|+.|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999999876 99999999999 79999999999866699999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|++.+ ...+|++.||++||.||++.++|..++++++...
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999864 4677999999999999999999999999998765
No 57
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.79 E-value=1.6e-18 Score=167.44 Aligned_cols=120 Identities=28% Similarity=0.530 Sum_probs=112.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999975 47899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+|++.+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999988753
No 58
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.4e-18 Score=175.50 Aligned_cols=123 Identities=30% Similarity=0.401 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
..++||||||++..+..+...|...++.|..+.++.+|++.++... .||+||+|+.||++||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4689999999999999999999999999999999999999998652 38999999999999999999999753 3689
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
||++|++.+.+...++++.||++||.||++.++|...++++++....
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999876543
No 59
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=2.8e-18 Score=152.56 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=112.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~~~~IPV 109 (668)
..++||||||++..+..++.+|...+|.|. .+.++.+|++.++... ||+||+|+.|| +++|+++++.|+..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 458999999999999999999999899998 5999999999998876 99999999998 7999999999975588999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
|++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999987654
No 60
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=6.2e-19 Score=158.98 Aligned_cols=122 Identities=19% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHH--cCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRE--RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM 105 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~g-y~V~tasng~EALelLre--~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~ 105 (668)
...+.+||||||++..+..|+.+|...+ |.|..+.++.+++..+.. .. |||||+|+.||+++|++++++|+. .+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 3456899999999999999999999988 999999999988887764 44 999999999999999999999974 57
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999988754
No 61
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.78 E-value=3.2e-18 Score=155.66 Aligned_cols=123 Identities=25% Similarity=0.334 Sum_probs=111.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~ 106 (668)
.+.+.|||||||++..+..++.+|...++. |..+.++.+|++.++... |||||+|+.||+++|+++++.|+. .+.
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYELP 89 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCS
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 456789999999999999999999988744 568999999999999876 999999999999999999999974 478
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++.
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999999999999999987653
No 62
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=1.3e-19 Score=161.71 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=109.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
...++||||||++..+..++.+|+..+ |.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 345799999999999999999999999 99999999999999887655 999999999999999999999975 45899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
||++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887643
No 63
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=2.8e-18 Score=172.31 Aligned_cols=121 Identities=31% Similarity=0.475 Sum_probs=113.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+|||++++++|+. .+.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 35689999999999999999999999999999999999999998876 999999999999999999999974 468999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++|+..+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987654
No 64
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=2.9e-18 Score=156.15 Aligned_cols=121 Identities=25% Similarity=0.461 Sum_probs=111.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+++||||||++..+..++.+|+. ++.|..+.++.+|++.++... .||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 457999999999999999999986 899999999999999998764 2599999999999999999999974 5789999
Q ss_pred EEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~G-A~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+..+.+.+.+++..| +++||.||++.++|..+++.++++..
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999987653
No 65
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=7.4e-19 Score=157.39 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=102.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPV 109 (668)
.++||||||++..+..++.+|... +.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999987 99999999999999998876 9999999999999999999999854 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999998899999999999999999999999999999887543
No 66
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.78 E-value=3.8e-19 Score=155.66 Aligned_cols=117 Identities=27% Similarity=0.447 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 68999999999999999999998999999999999999887654 9999999999999999999999754 679999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|+..+.+.+.++++.||++||.||++.++|...+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 67
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.78 E-value=2.5e-18 Score=154.27 Aligned_cols=117 Identities=30% Similarity=0.444 Sum_probs=105.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 68999999999999999999998999999999999999998765 9999999999999999999999753 478999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++|+..+......++..|+++||.||++.++|..++++++++
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 999988766556666777899999999999999999988754
No 68
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=3.9e-18 Score=150.50 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=102.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~---~I 107 (668)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+... ..
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34679999999999999999999999999999999999999998876 99999999999999999999998543 34
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+||+++...+. ...++++.||++||.||++.++|..+++++....
T Consensus 82 ~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 55555555444 7889999999999999999999999999876554
No 69
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.78 E-value=5.5e-18 Score=154.42 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=112.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4589999999999999999999999999999999999999998765 999999999999999999999974 4789999
Q ss_pred EEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~G-A~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+..+.+...++++.| |++||.||++.++|..+++++++...
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999887653
No 70
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.77 E-value=3e-18 Score=153.42 Aligned_cols=120 Identities=24% Similarity=0.348 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
..++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+ ||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 4579999999999999999999999999999999999999998765 99999999 999999999999974 4679999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999887543
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=1.4e-18 Score=155.25 Aligned_cols=121 Identities=25% Similarity=0.391 Sum_probs=112.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~---~~~IP 108 (668)
..++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 5689999999999999999999999999999999999999998765 999999999999999999999975 46799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
||++|+..+.+...++++.||++||.||++.++|..++++++++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999999888888899999999999999999999999999987654
No 72
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=5.1e-18 Score=150.90 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MP-----dmDG~ELLe~Ir~-~~~ 106 (668)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|++++++|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 479999999999999999999999999999999999999998876 99999999999 9999999999974 478
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987654
No 73
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=1.6e-18 Score=185.01 Aligned_cols=118 Identities=31% Similarity=0.441 Sum_probs=111.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILS 113 (668)
+||||||++.++..++.+|+..+|.|..+.++.+|++.++... ||+||+|++||+|||++++++|+. .+.+|||++|
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 7999999999999999999999999999999999999999876 999999999999999999999974 5789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++.+.+.+.+|++.||++||.||++.++|..++++++....
T Consensus 80 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp CSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 74
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.77 E-value=3.2e-18 Score=166.24 Aligned_cols=118 Identities=28% Similarity=0.424 Sum_probs=111.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 69999999999999999999998999999999999999998776 9999999999999999999999876889999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998764
No 75
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.77 E-value=3.4e-18 Score=152.34 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=105.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~----~ 106 (668)
.+++||||||++..+..++.+|...++.|..+.++.+|++.+... +|+||+|+.||+++|++++++|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999998899999999999999987542 499999999999999999999973 22 3
Q ss_pred C-cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 107 I-PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
. +||++|+..+.+.+.++++.||++||.||++.++|..+++++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999999999999999999999999999999999887643
No 76
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.77 E-value=4.1e-18 Score=165.53 Aligned_cols=154 Identities=31% Similarity=0.429 Sum_probs=127.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999975 47899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcc--c-ccccccCCc----------ccccccCCCchh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 178 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~--~-k~~e~~~~l----------e~~d~~klt~~E 178 (668)
+|+..+.+.+.++++.||++||.||++.++|..++++++++.... . ......... .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 999999888899999999999999999999999999998875431 1 100000000 011224578888
Q ss_pred HHHHhhhccC
Q 005938 179 IEYASSVNEG 188 (668)
Q Consensus 179 ie~lssv~eg 188 (668)
.+++..+.++
T Consensus 165 ~~vL~~l~~g 174 (233)
T 1ys7_A 165 FDLLAVLAEH 174 (233)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888877666
No 77
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.77 E-value=1.9e-18 Score=156.23 Aligned_cols=118 Identities=27% Similarity=0.378 Sum_probs=101.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 34 LRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~--~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
++||||||++..+..++.+|.+ .++.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999974 477776 8999999999987655 999999999999999999999974 478999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++|+..+.+.+.++++.||++||.||++.++|..+++++++..
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999988764
No 78
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.77 E-value=3e-18 Score=148.01 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=103.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
++||||||++..+..++..|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999974 468999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
|+..+.. .++++.||++||.||++.++|...+++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999887753
No 79
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.76 E-value=2.7e-18 Score=168.91 Aligned_cols=153 Identities=25% Similarity=0.406 Sum_probs=125.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++||||||++..+..|+.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 68999999999999999999998999999999999999998876 9999999999999999999999876789999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCc----------ccccccCCCchhHHHHh
Q 005938 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEYAS 183 (668)
Q Consensus 114 a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~~~l----------e~~d~~klt~~Eie~ls 183 (668)
+..+.+.+.++++.||++||.||++.++|..+++.++++.............. .......++.+|.+++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~ 163 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLV 163 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHHH
Confidence 99999899999999999999999999999999999876542211100000000 01112347788888887
Q ss_pred hhccC
Q 005938 184 SVNEG 188 (668)
Q Consensus 184 sv~eg 188 (668)
.+.++
T Consensus 164 ~l~~~ 168 (238)
T 2gwr_A 164 ALARK 168 (238)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77665
No 80
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.76 E-value=1.5e-17 Score=149.12 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
.+||||||++..+..++.+|... |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47999999999999999999875 99999999999999998765 999999999999999999999974 467899999
Q ss_pred eccCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~-GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+...+.+++.. ||++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888899886 59999999999999999999887654
No 81
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.76 E-value=2.9e-18 Score=181.87 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..|+.+|+..+|.|.++.++.+|++.++... |||||+|++||+|||++++++|+. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998876 999999999999999999999974 47899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vlrk~ 153 (668)
+|++.+.+.+.+|++.||++||.||+ +.++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999888887653
No 82
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.76 E-value=9.4e-18 Score=153.03 Aligned_cols=121 Identities=30% Similarity=0.497 Sum_probs=111.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
++++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3579999999999999999999999999999999999999887655 999999999999999999999974 4789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
++|+..+.+.+.++++.||++||.||++.++|..+++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 83
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.3e-17 Score=149.22 Aligned_cols=120 Identities=19% Similarity=0.304 Sum_probs=107.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~~----~~PDLVIlDI~MPdmDG~ELLe~Ir~~- 104 (668)
..++||||||++..+..++.+|...++ .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.|+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999998887 8999999999999998610 249999999999999999999999854
Q ss_pred --CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 105 --~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+.+|||++|+..+.+.+.++++.||++||.||++.++|..++.+...
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998776543
No 84
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1.1e-17 Score=152.35 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~-~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
.+++||||||++..+..++.+|.. .+|.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 358999999999999999999998 689987 8999999999998765 999999999999999999999975 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
||++|+..+.+...++++.||++||.||++.++|..+++++++++
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887654
No 85
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.75 E-value=8.4e-19 Score=171.72 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=126.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g-y~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVI 110 (668)
++||||||++..+..++.+|...+ |.+ ..+.++.+|++.+.... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 799999999999999999999876 884 57999999999998876 999999999999999999999974 5789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccccccc--CCc-----ccccccCCCchhHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYAS 183 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e~~--~~l-----e~~d~~klt~~Eie~ls 183 (668)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++........... ... .......++.+|.+++.
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL~ 159 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLG 159 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988653322110000 000 00122457788888888
Q ss_pred hhccCCcc
Q 005938 184 SVNEGTEG 191 (668)
Q Consensus 184 sv~eg~e~ 191 (668)
.+.++...
T Consensus 160 ~l~~g~s~ 167 (225)
T 3c3w_A 160 LLSEGLTN 167 (225)
T ss_dssp HHHTTCCH
T ss_pred HHHCCCCH
Confidence 87776443
No 86
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.75 E-value=1e-18 Score=170.53 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=121.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYNVTT-CSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~-~gy~V~t-asng~EALe-lLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~ 105 (668)
+..++||||||++..+..++.+|+. .++.|.. +.++.+++. .+.... ||+||+|+.||++||++++++|+. .+
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCP 82 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCT
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 3468999999999999999999984 5888754 455666555 355554 999999999999999999999976 68
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccccc---------ccCCcccccccCCCc
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---------NSGSLEETDHHKRGS 176 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~~e---------~~~~le~~d~~klt~ 176 (668)
++|||++|++.+.+....+++.||++||.||++.++|..+++.++++......... ............++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 89999999999998999999999999999999999999999998876432211100 000001112234778
Q ss_pred hhHHHHhhhccCCc
Q 005938 177 DEIEYASSVNEGTE 190 (668)
Q Consensus 177 ~Eie~lssv~eg~e 190 (668)
+|.+++..+..|..
T Consensus 163 rE~~vL~~l~~g~s 176 (225)
T 3klo_A 163 REQQIIKLLGSGAS 176 (225)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88888887776643
No 87
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.75 E-value=1.2e-17 Score=144.96 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCCcE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~~---~~IPV 109 (668)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|++++++++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999998999999999999999998876 99999999999 99999999999754 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|++ +..+.+...++++.|+++||.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888889999999999999999999999999988764
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.74 E-value=1.7e-17 Score=178.06 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=111.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|++||++||++++++|+. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998765 999999999999999999999974 578999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|++.+.+.+.+|++.||+|||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654
No 89
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.74 E-value=1.7e-17 Score=160.40 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=122.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVII 111 (668)
.++||||||++..+..++.+|...+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 3699999999999999999999888 899999999999877 3 39999999999999999999999754 7899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhccccc---c--cccCC--cccccccCCCchhHHHHhh
Q 005938 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE---H--ENSGS--LEETDHHKRGSDEIEYASS 184 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~~~k~---~--e~~~~--le~~d~~klt~~Eie~lss 184 (668)
+|+..+.+.+.++++.||++||.||++.++|..+++.++++....... . ..... ........++.+|.+++..
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~ 156 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLF 156 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHHH
Confidence 999999999999999999999999999999999999998874310000 0 00000 0011223477888888877
Q ss_pred hccC
Q 005938 185 VNEG 188 (668)
Q Consensus 185 v~eg 188 (668)
+.++
T Consensus 157 l~~~ 160 (220)
T 1p2f_A 157 LAEN 160 (220)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7666
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.74 E-value=7.2e-18 Score=152.16 Aligned_cols=114 Identities=24% Similarity=0.327 Sum_probs=96.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~-gy~V-~tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
+.+.+||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+... . ||+||+|+.||+++|++++++|+.....
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPN--VDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTT--CCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 45678999999999999999999987 8886 4899999999999876 5 9999999999999999999999866668
Q ss_pred cEEEEec--cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 005938 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (668)
Q Consensus 108 PVIILSa--~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iL 146 (668)
|+|++++ ..+.+.+.++++.||++||.||++.++|...+
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 9999987 66677788999999999999999976665543
No 91
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=2e-17 Score=178.00 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPVI 110 (668)
.+||||||++..+..|+.+|...+|.|..+.++.+|++.++... |||||+|+.||+|||++++++|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999998999999999999999998876 9999999999999999999999853 579999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|++.+.+.+.++++.||++||.||++.++|...++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 92
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.74 E-value=5.1e-17 Score=145.58 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=104.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~-gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IP 108 (668)
..++||||||++..+..++.+|... ++. +..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 4589999999999999999999875 787 458999999999998866 9999999999999999999999864 4567
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhc
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~~ 155 (668)
||++|+..+ .+.++++.||++||.||++.++|..+++++++....
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 888988754 577899999999999999999999999998876543
No 93
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=5.4e-17 Score=144.74 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=108.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~-~IP 108 (668)
...+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCcc
Confidence 456789999999999999999999999999999999999999998865 99999 89999999999997557 899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vlrk 152 (668)
||++|+..+.+...++++.||++||.||+ +.++|..++++++++
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999887654
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.73 E-value=1.4e-17 Score=151.50 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=99.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy-~V~tasng~EALelLre-~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
.++||||||++..+..++.+|... ++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 78899999999999987 54 999999999999999999999974 46899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
||++|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 9999999998999999999999999999999999999999887653
No 95
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.7e-17 Score=148.84 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=102.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~------~~~ 106 (668)
.++||||||++..+..++.+|...++.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 369999999999999999999988999999999999999998765 999999999999999999999974 267
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|||++|+..+..... ..||++||.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876554332 7899999999999999999999887544
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=6.5e-17 Score=142.35 Aligned_cols=118 Identities=21% Similarity=0.363 Sum_probs=106.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd-mDG~ELLe~Ir~-~~~IPVI 110 (668)
+++||||||++..+..++..|...+|.|..+.++.+|++.++.. ..||+||+|+.||+ ++|++++++|+. .+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 57999999999999999999999899999999999999999875 13999999999998 999999999974 4689999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|+..+.+...+++..| +||.||++.++|..+++++++..
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 999999888888887775 89999999999999999987654
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=4.5e-17 Score=151.40 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=100.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~g-y-~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
...++||||||++..+..++.+|...+ + .+..+.++.+|++.++... ||+||+|+.||+++|++++++|+....+|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 456899999999999999999999874 3 3558999999999998876 99999999999999999999998655599
Q ss_pred EEEEeccCCHH--HHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHH
Q 005938 109 VIMMSADGRVS--AVMRGIRHGACDYLIKPIRE---------EELKNIWQHVV 150 (668)
Q Consensus 109 VIILSa~sd~e--~a~kAl~~GA~dYLlKPis~---------eEL~~iLq~Vl 150 (668)
||++|+..+.. .+.++++.||++||.||++. ++|...+++++
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 99999977754 67799999999999999994 55555555443
No 98
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.72 E-value=2.6e-17 Score=170.76 Aligned_cols=117 Identities=27% Similarity=0.365 Sum_probs=107.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~-~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
..+||||||++..+..++.+|.+ .+|.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 36799999999999999999974 5899999999999999998876 9999999999999999999999853 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
||++|++.+.+++.+|++.||++||.||++.++|..++..+.+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887754
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.72 E-value=2.5e-17 Score=140.30 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=103.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IPV 109 (668)
+.+||||||++..+..++.+|...+|.|..+.++.++++.++... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999998876 9999999999999999999999754 67999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
|++|...+.. ++++.|+++||.||++.++|...+++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988776 8999999999999999999998887653
No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=2e-17 Score=145.78 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=105.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVII 111 (668)
.++||||||++..+..++.+|+..++.|..+.+++++++.+.. . ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987653 2 999999999999999999999974 47899999
Q ss_pred EeccCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 112 LSa~sd~-----e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|+..+. +.+.+++..||++||.||++.++|..+++++...
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 9998875 6777899999999999999999999999987654
No 101
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.6e-17 Score=156.62 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=120.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~-~IPVIIL 112 (668)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999998999999999999999998665 99999 99999999999997556 8999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh--hccccc-c--cccCC--cccccccCCCchhHHHHhh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENKE-H--ENSGS--LEETDHHKRGSDEIEYASS 184 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPi-s~eEL~~iLq~Vlrk~--~~~~k~-~--e~~~~--le~~d~~klt~~Eie~lss 184 (668)
|++.+.+.+.++++.||++||.||+ +.++|..++++++++. ...... . ..... ........++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 9999999999999999999999999 9999999999988664 111000 0 00000 0011123467788888877
Q ss_pred hccC
Q 005938 185 VNEG 188 (668)
Q Consensus 185 v~eg 188 (668)
+.++
T Consensus 155 l~~~ 158 (223)
T 2hqr_A 155 LARH 158 (223)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7666
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=2.8e-17 Score=146.76 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-cCCCceEEEEeCCCCCCCHHHHHHHHhc-c
Q 005938 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (668)
Q Consensus 27 ~e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre-~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~ 104 (668)
+...+.+.+||||||++..+..++.+|...+|.|..+.++.+|++.++. .. ||+||+|+.||+++|++++++|+. .
T Consensus 9 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 9 HHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp -----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 4445678999999999999999999999989999999999999999887 65 999999999999999999999975 4
Q ss_pred CCCcEEEEe-ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 105 MDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 105 ~~IPVIILS-a~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+.+|||++| +..+... .+++ +++||.||++.++|..+++++++
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 689999999 8877666 6666 99999999999999999987654
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.69 E-value=3.5e-17 Score=155.77 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVI 110 (668)
.+++||||||++..+..++.+|...+|.|..+.++.+|+ .. .||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~--~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DV--PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SS--CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CC--CCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888877766 22 49999999999999999 88888766 889999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
++|++.+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.69 E-value=6.5e-17 Score=172.96 Aligned_cols=120 Identities=22% Similarity=0.300 Sum_probs=106.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~-~gy~V~tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPV 109 (668)
.++||||||++..+..++.+|+. .++.|.++.++.+|++.++.. . |||||+|++||+|||++++++++.. +..+|
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~~~~~i 80 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSGKVHSV 80 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCceE
Confidence 47999999999999999999998 578999999999999999874 5 9999999999999999999999754 45667
Q ss_pred EEEeccCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 005938 110 IMMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (668)
Q Consensus 110 IILSa~sd~-----e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~~ 154 (668)
|++|++++. ..+.+|+..||++||.||++.++|..+++++++...
T Consensus 81 i~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 81 ILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 777777766 677889999999999999999999999999887643
No 105
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=1.9e-18 Score=149.90 Aligned_cols=118 Identities=35% Similarity=0.477 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIIL 112 (668)
.+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 57999999999999999999988999999999999999887654 999999999999999999999974 468999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+..+.+.+.++++.||++||.||++.++|...++++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99998888889999999999999999999999999887653
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.63 E-value=2.7e-15 Score=159.40 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=103.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~-gy~-V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.+|||||||++..++.|+.+|+.. +|. |.++.++.+|++.++... ||+||+|+.||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998876 9999999999999999999999865559999
Q ss_pred EEeccCCH--HHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHHH
Q 005938 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~--e~a~kAl~~GA~dYLlKPis~---------eEL~~iLq~Vlrk 152 (668)
++|+..+. +...++++.||+|||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998775 458899999999999999983 6677777766543
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.59 E-value=1.5e-15 Score=153.40 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=86.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~-gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIIL 112 (668)
.|||||||++.+++.|...|... ++.+..+ ++.+++..+... .||+||+|++||++||++++++++. ..+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEEE
Confidence 58999999999999999999754 7777544 555555554433 4999999999999999999999986 36999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCH
Q 005938 113 SADGRVSAVMRGIRHGACDYLIKPIRE 139 (668)
Q Consensus 113 Sa~sd~e~a~kAl~~GA~dYLlKPis~ 139 (668)
|++.+.+.+.+|++.||+|||.||+..
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999744
No 108
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.56 E-value=2.8e-15 Score=123.32 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=59.4
Q ss_pred CCCCccchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 217 ~sKKprvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
..+|+|+.|+.|+|..|+++++++|.++|.||+|+++|+++|||+++|+||| |+||..+||.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL-----QKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL-----QKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH-----HHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH-----HHHHHHHHcc
Confidence 3578999999999999999999999999999999999999999999999999 9999999985
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.53 E-value=8.5e-15 Score=169.84 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=108.2
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 005938 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (668)
Q Consensus 34 irVLIVDDDp-~i-------re~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPd----mDG~ELLe~I 101 (668)
|||||||||+ .. ++.|+..|+..+|.|..+.++++|+..++... .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 99999999999999999999999999998642 3999999999999 9999999999
Q ss_pred hcc-CCCcEEEEeccCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHHh
Q 005938 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKR 153 (668)
Q Consensus 102 r~~-~~IPVIILSa~sd-~e~a~kAl~~GA~dYLlKPis~eE-L~~iLq~Vlrk~ 153 (668)
|+. .++|||++|+.++ .+....++..||+|||.||++..| |...|+.++++.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 854 5899999999887 777888999999999999999999 888888888764
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.99 E-value=3e-10 Score=109.77 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=77.8
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 58 y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
+.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+..++++++.....+.+.++++.||++||.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45666889999999998876 999999999999999999999974 355677777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 005938 137 --IREEELKNIWQHVVR 151 (668)
Q Consensus 137 --is~eEL~~iLq~Vlr 151 (668)
++..+|...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777766553
No 111
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=98.98 E-value=1.4e-10 Score=102.35 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=58.3
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. +||..+++++.+||..+||.|..+|.+.||+++|+||.
T Consensus 40 r~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 101 (108)
T 3oou_A 40 QLFQKEMGEHFTDYLNRYRVNYAK-----EELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPN 101 (108)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHcCCCChHHHHHHHHHHhCcCHH
Confidence 379999999999999999999995 67778999999999999999999999999999999984
No 112
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.98 E-value=1.1e-08 Score=110.00 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=99.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~~IP 108 (668)
.+.+|++|||+...+..+...|.. .+.+....+..+++. .... .||+|++|+.||+|||+++++.++.. ..+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 346899999999988888888866 466777888888763 3333 48999999999999999999999743 5789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+|++|+..+.+...++++.|+++|+.||++.+++...+..+++.+
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887766543
No 113
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=98.97 E-value=1.4e-10 Score=103.18 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=58.5
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. +||..+++++.+||..|||.|..+|.+.|||++|+||.
T Consensus 42 r~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 103 (113)
T 3oio_A 42 RLFKQYLGTVPSKYYLELRLNRAR-----QLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPR 103 (113)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 77778999999999999999999999999999999985
No 114
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=98.96 E-value=1.6e-10 Score=101.83 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=58.3
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. +||..+++++.+||..+||.|..+|.+.||+++|+||.
T Consensus 39 r~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (107)
T 2k9s_A 39 HLFRQQLGISVLSWREDQRISQAK-----LLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPS 100 (107)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 67777999999999999999999999999999999985
No 115
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=98.95 E-value=2e-10 Score=100.44 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=58.2
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. ++|..+++++.+||..+||.|+.+|.+.||+++|+||.
T Consensus 38 r~fk~~~g~s~~~~~~~~Rl~~A~-----~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP~ 99 (103)
T 3lsg_A 38 IMFKKNFGIPFQDYLLQKRMEKAK-----LLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPK 99 (103)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 67777999999999999999999999999999999984
No 116
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.94 E-value=2.5e-10 Score=100.58 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=57.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCC--CCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPG--LTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~g--Lti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. +||..++ +++.+||..|||.|..+|.+.||+++|+||.
T Consensus 37 r~fk~~~G~s~~~~~~~~Rl~~A~-----~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 100 (108)
T 3mn2_A 37 KAFQRSRGYSPMAFAKRVRLQHAH-----NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPS 100 (108)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHH-----HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHH-----HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcChH
Confidence 379999999999999999999995 7777776 7999999999999999999999999999985
No 117
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=98.91 E-value=3.1e-10 Score=103.48 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=58.6
Q ss_pred chhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 223 VVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..|+.++|.+|.+|++++||++|. +||..+++++.+||..|||.|..+|.+.|||++|+||.
T Consensus 46 r~fk~~~G~s~~~~l~~~Rl~~A~-----~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 46 RMFKKETGHSLGQYIRSRKMTEIA-----QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 379999999999999999999995 77777999999999999999999999999999999996
No 118
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=98.88 E-value=5.6e-10 Score=100.45 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=56.8
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.|+.. |.+|.+|++++||++|. +||..+++++.+||..|||.|..+|.+.|||++|+||.
T Consensus 43 ~fk~~-G~s~~~~~~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 43 KLREE-ETSYSQLLTECRMQRAL-----QLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHH-----HHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 68886 99999999999999995 77888999999999999999999999999999999995
No 119
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=98.70 E-value=3.2e-09 Score=106.98 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=56.4
Q ss_pred hhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 224 vwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
.||. +|.+|.+||+++||++|+ +||..+++++.|||..|||.|+.||++.|||++|+||.
T Consensus 205 ~fk~-~G~t~~~~l~~~Rl~~A~-----~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~ 264 (276)
T 3gbg_A 205 ELES-RGVKFRELINSIRISYSI-----SLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPS 264 (276)
T ss_dssp HHHT-TTCCHHHHHHHHHHHHHH-----HHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHHH-----HHHhCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHH
Confidence 6875 999999999999999995 77778999999999999999999999999999999995
No 120
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=98.56 E-value=1.8e-08 Score=102.17 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=58.7
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
+..|+.++|.+|.+|++++||++|. +||..+++++.+||..+||.|..+|++.|||++|+||.
T Consensus 37 ~r~f~~~~g~s~~~~~~~~Rl~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~g~~P~ 99 (292)
T 1d5y_A 37 QRMFKDVTGHAIGAYIRARRLSKSA-----VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 99 (292)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcChH
Confidence 3479999999999999999999995 67777999999999999999999999999999999985
No 121
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=98.51 E-value=2.5e-08 Score=106.18 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred cchhhHHHhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 222 rvvwk~Elg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
...|++++|.+|.+|++++|+++|+ +||..+++++.+||..|||.|+.+|.+.|||++|+||.
T Consensus 339 ~r~f~~~~g~s~~~~~~~~r~~~a~-----~~L~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~~~g~tP~ 401 (412)
T 4fe7_A 339 EKRFKEEVGETIHAMIHAEKLEKAR-----SLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPK 401 (412)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHSSSCHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH-----HHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHH
Confidence 3379999999999999999999995 67778999999999999999999999999999999985
No 122
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=96.90 E-value=0.00058 Score=62.04 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHhcccccchHHHHHHhc-CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCC
Q 005938 234 VSAVNQLGIDKAVPKRILELMN-VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQ 289 (668)
Q Consensus 234 v~yLnqLRIeKA~PKkILeLL~-v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q 289 (668)
..+....++++|. ++|. .+.+++++||.++||+ ..||.+.||+.+|+||.
T Consensus 73 ~~~~~~~~l~~a~-----~~i~~~~~~sl~~lA~~~g~S-~~~f~r~Fk~~~G~tp~ 123 (133)
T 1u8b_A 73 PRQHRLDKITHAC-----RLLEQETPVTLEALADQVAMS-PFHLHRLFKATTGMTPK 123 (133)
T ss_dssp HHHHHHHHHHHHH-----HHTCSSSCCCHHHHHHHHTSC-HHHHHHHHHHHTSSCHH
T ss_pred cccchHHHHHHHH-----HHHHhcCCCCHHHHHHHHCcC-HHHHHHHHHHHHCcCHH
Confidence 4677777888774 7777 7899999999999997 99999999999999985
No 123
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.89 E-value=0.0014 Score=65.18 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=71.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
..+.+||||||++..++.|+.+|..+|+.|..+.+. ....+|+||+|..||+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 567899999999999999999999999999887641 12348999999999886431 1255
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.++...... ....+...++.||+...++...+.+++.
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 555542210 1123456899999999888888777653
No 124
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.42 E-value=0.0033 Score=72.93 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEeccCCHHHHHH
Q 005938 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 45 ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir-~~~~IPVIILSa~sd~e~a~k 123 (668)
..+.|...|+..+|+|..+.+.++|+..++.+ ..++.||+|++|+ +.+++++|+ ...++||++++...+.+.+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 34556677888899999999999999999976 3689999999886 789999997 457999999988755333221
Q ss_pred HHHcCCcEEEeCCCC-HHHHHHHHHHHHHH
Q 005938 124 GIRHGACDYLIKPIR-EEELKNIWQHVVRK 152 (668)
Q Consensus 124 Al~~GA~dYLlKPis-~eEL~~iLq~Vlrk 152 (668)
....++.+|+.+..+ .+.+...+.+..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123578899998875 45555555554443
No 125
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.91 E-value=0.039 Score=52.68 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC-CCCCCCHH--HHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE------eC
Q 005938 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDGF--KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI-~MPdmDG~--ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL------lK 135 (668)
+..+.++.+.... ..+++++++ .++.++|+ +++++++...++|||.+++..+.++..++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666665543 367999997 67767774 56777766678999999999999999999999999985 68
Q ss_pred CCCHHHHHHHHH
Q 005938 136 PIREEELKNIWQ 147 (668)
Q Consensus 136 Pis~eEL~~iLq 147 (668)
|++..++++.++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999988877543
No 126
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.29 E-value=0.056 Score=48.39 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=77.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCC-CCCCHHHHHHHHhc---cCCCcEE
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGL---EMDLPVI 110 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~M-PdmDG~ELLe~Ir~---~~~IPVI 110 (668)
.||+|-.|-.+.-.+++++....|.++....... ...-|+|+|+..+ |. .|.. ....-+|
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEEE
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccEE
Confidence 5888988888888999999888898877543221 1236999999854 33 1221 1234578
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
++-..-+.+.+.+.++.||. ||+.|+...-|.++|+..++.
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88888888999999999999 999999999999999988875
No 127
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.17 E-value=0.98 Score=42.59 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=81.9
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-C-CHHHHHHHHh
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd-m-DG~ELLe~Ir 102 (668)
...||++. |.+..=...+..+|+..||+|.. ....++.++.+++.. ||+|.+-..+.. + .--++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45688888 78888888999999999999974 346788888888876 999999887653 2 2334555665
Q ss_pred cc--CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 103 ~~--~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+. .+++|++ -+..-.+....+.+.|++.++..--+.++....+..++.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566554 45444444445668999876655456666666666666554
No 128
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=90.82 E-value=0.14 Score=44.32 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 252 ELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 252 eLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
+.+....+++.++|.++|+ +..+|.+.||+.+|+|++.
T Consensus 14 ~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 51 (107)
T 2k9s_A 14 DHLADSNFDIASVAQHVCL-SPSRLSHLFRQQLGISVLS 51 (107)
T ss_dssp HTSSCSSCCHHHHHHHTTS-CHHHHHHHHHHHHSSCHHH
T ss_pred HHhccCCCCHHHHHHHHCC-CHHHHHHHHHHHHCcCHHH
Confidence 3344478999999999998 6899999999999999863
No 129
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=90.79 E-value=0.15 Score=44.03 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++.+||.++|++ ..||.+.||+.+|+|++.
T Consensus 17 ~~~~~~~lA~~~~~s-~~~l~r~fk~~~G~s~~~ 49 (108)
T 3mn2_A 17 RPITIEKLTALTGIS-SRGIFKAFQRSRGYSPMA 49 (108)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHTSSCHHH
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHhCcCHHH
Confidence 459999999999995 899999999999999863
No 130
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=90.30 E-value=1.4 Score=44.08 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=68.6
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 005938 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (668)
Q Consensus 33 girVLIVDD----Dp~ire~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~------MPdmDG~ELLe~I 101 (668)
|..++++|- +|.....+.+.+.+.+..+ ..+.+.+++..+.+.. +|+|.+..+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G---ad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKG---IEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCC---CCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 555666553 3333344444445556554 4678888888776543 899865322 2234568999999
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 102 r~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+.. ++|||.-.+-.+.+.+.++++.||++.+.=
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 765 899999888889999999999999998763
No 131
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.14 E-value=3.5 Score=43.38 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=76.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~---gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
..+|+.|+|.|+...+.|..++... .+.|..+++.+.+.+.+++.. +||+|+|-.+.... . ......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~--~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----S--EFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----G--GGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----h--hhcccCc
Confidence 3479999999999999999999753 688999999999999998876 99999998775521 1 1123456
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+++++.....+ ...-...+.|--+.+++.+.+..++..
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~e 128 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYSD 128 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHhh
Confidence 77776543221 111234688988998887777666543
No 132
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=88.93 E-value=0.37 Score=41.21 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=33.8
Q ss_pred HHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
|.+.+..+.+++.+||.++|. +..+|.+.||+.+|+|++.
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~g~s~~~ 50 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDL-SSGYLSIMFKKNFGIPFQD 50 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTC-CHHHHHHHHHHHHSSCHHH
T ss_pred HHHHccCCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 345556679999999999998 5689999999999999863
No 133
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=88.80 E-value=0.19 Score=43.82 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=29.6
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++++||.++|+ +..||.+.||+.+|+|++.
T Consensus 22 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 54 (113)
T 3oio_A 22 EPLSTDDIAYYVGV-SRRQLERLFKQYLGTVPSK 54 (113)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHTSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 45999999999998 5899999999999999863
No 134
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=87.86 E-value=2.4 Score=42.26 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=67.1
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 005938 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (668)
Q Consensus 33 girVLIVDD----Dp~ire~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~------MPdmDG~ELLe~I 101 (668)
|..+++++- +|.....+.+.+.+.+..+ ..+.+.+++..+.+.. .|+|.+..+ .....++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G---ad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLG---ADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTT---CSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCC---CCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 455555553 2333344444445556554 4677888887766543 898864322 1233468999999
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 102 r~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+.. ++|||.-.+-.+.+.+.++++.||++.+.
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 765 89999988888999999999999999876
No 135
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=87.57 E-value=3.2 Score=42.75 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=75.2
Q ss_pred CccEEEEEeCC-------HHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHH
Q 005938 32 AGLRVLVVDDD-------ITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKL 97 (668)
Q Consensus 32 ~girVLIVDDD-------p~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~MP-----dmDG~EL 97 (668)
..+|+=|+-|+ ....+.. +.|.+.||.|. +..+...|..+. +.. +++| +.+-.| +..-+++
T Consensus 104 ~~iKlEv~~d~~~llpD~~~tv~aa-~~L~~~Gf~Vlpy~~dd~~~akrl~-~~G--~~aV-mPlg~pIGsG~Gi~~~~l 178 (265)
T 1wv2_A 104 NLVKLEVLADQKTLFPNVVETLKAA-EQLVKDGFDVMVYTSDDPIIARQLA-EIG--CIAV-MPLAGLIGSGLGICNPYN 178 (265)
T ss_dssp CEEEECCBSCTTTCCBCHHHHHHHH-HHHHTTTCEEEEEECSCHHHHHHHH-HSC--CSEE-EECSSSTTCCCCCSCHHH
T ss_pred CeEEEEeecCccccCcCHHHHHHHH-HHHHHCCCEEEEEeCCCHHHHHHHH-HhC--CCEE-EeCCccCCCCCCcCCHHH
Confidence 45777777333 3333333 34445599876 455666665544 333 7887 554443 2223789
Q ss_pred HHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 005938 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVV 150 (668)
Q Consensus 98 Le~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vl 150 (668)
++.|++..++|||.=.+-...+.+.+++++||++.++ |--++..+...+..++
T Consensus 179 I~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 179 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999888899999877888999999999999999874 4444666665555544
No 136
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=87.15 E-value=0.58 Score=40.41 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++++||.++|. +..+|.+.||+.+|+|++.
T Consensus 20 ~~~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 52 (108)
T 3oou_A 20 EGMSLKTLGNDFHI-NAVYLGQLFQKEMGEHFTD 52 (108)
T ss_dssp SCCCHHHHHHHHTS-CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 47999999999998 6899999999999999864
No 137
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=84.30 E-value=12 Score=33.99 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=70.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc--CCCcEEEE
Q 005938 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE--MDLPVIMM 112 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~---tasng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir~~--~~IPVIIL 112 (668)
|-+..=...+..+|+..||+|. .....++.++.+++.. +|+|.+-..|.. +. --++++.|++. .+++|++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~v- 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYV- 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEE-
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEE-
Confidence 4455666678888999999987 4567889999998876 999999887743 11 22355566542 2566544
Q ss_pred ecc-----CCHHH-HHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 005938 113 SAD-----GRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (668)
Q Consensus 113 Sa~-----sd~e~-a~kAl~~GA~dYLlKPis~eEL~~iLq~ 148 (668)
-+. .++.. ...+.+.|++.|+.---+..++...+..
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 443 23332 4457789998888655566666555443
No 138
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=81.83 E-value=0.79 Score=40.98 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.6
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++++||.++|+ +..+|.+.||+.+|+|++.
T Consensus 26 ~~~sl~~lA~~~~~-S~~~l~r~fk~~~G~s~~~ 58 (129)
T 1bl0_A 26 SPLSLEKVSERSGY-SKWHLQRMFKKETGHSLGQ 58 (129)
T ss_dssp SCCCCHHHHHHSSS-CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 34999999999998 6899999999999999863
No 139
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=80.15 E-value=18 Score=36.25 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=73.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIG 102 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd-mDG-~ELLe~Ir 102 (668)
.+-+||++ |-+..=...+..+|+..||+|.. -...++.++.+++.. ||+|.+-..|.. +.. -++++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHH
Confidence 45578887 67778888899999999999863 346677778888776 999999887654 443 34677776
Q ss_pred c-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 005938 103 L-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (668)
Q Consensus 103 ~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vl 150 (668)
+ ..++||++--.....+++ -..||+.|-... .+.....+.++
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred hcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 4 356776664444444433 377987775533 34334444433
No 140
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.69 E-value=13 Score=32.76 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=35.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCce
Q 005938 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD 81 (668)
Q Consensus 36 VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PD 81 (668)
|++..-|...+..++.++.+.||.|.++.+..+.-+.+++.-..+.
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkyn 50 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYN 50 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhC
Confidence 4444667777888999999999999999999988877776543344
No 141
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=76.18 E-value=12 Score=36.11 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=67.5
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhc
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~tas---ng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir~ 103 (668)
+-+|++. |-+..-...+..+|+..||+|.... ..++.++.+++.. ||+|.+-..|.. +. --++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 7778888899999999999998543 4677778887776 999999887653 32 3345666764
Q ss_pred c---CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 104 ~---~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
. +++||++--...+.+.+ -+.||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 3 34776665444454443 4579987754
No 142
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=75.76 E-value=6.9 Score=38.37 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCcEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd------~e~a~kAl~~GA~dYLlKPis~eEL~~iLq 147 (668)
++++++++++..++||++++.... .+.+..+++.||+..++-....++....++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 377888888766789988874333 567889999999999986666665544443
No 143
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=74.82 E-value=32 Score=35.04 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeC---CCCCCCHHHHHHHHhcc-C-CCcEEEEeccCCH
Q 005938 45 CLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGLE-M-DLPVIMMSADGRV 118 (668)
Q Consensus 45 ire~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI---~MPdmDG~ELLe~Ir~~-~-~IPVIILSa~sd~ 118 (668)
....+.......|..+ ..+.+.+++...+.. . +|+|-+.- ..... +++.+++|... + ++|+|..++-.+.
T Consensus 150 ~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~ 225 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVRGT 225 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSH
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCCCH
Confidence 3444445555567664 467888887666654 3 78887753 22222 35666777533 3 6899999888889
Q ss_pred HHHHHHHHcCCcEEEeC
Q 005938 119 SAVMRGIRHGACDYLIK 135 (668)
Q Consensus 119 e~a~kAl~~GA~dYLlK 135 (668)
+.+.+..++||+++++=
T Consensus 226 edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 226 ADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999873
No 144
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=74.45 E-value=9.8 Score=39.23 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCCC-----HHHHHHHHhc-cCC-CcEEEEec
Q 005938 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMD-----GFKLLEHIGL-EMD-LPVIMMSA 114 (668)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~MPdmD-----G~ELLe~Ir~-~~~-IPVIILSa 114 (668)
...+..+.+. +.||.|. +..+...|..+.+ .. +++| +.+-.|-.. -.++++.+++ ..+ +|||+=.+
T Consensus 112 ~tv~aa~~L~-k~Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GG 186 (268)
T 2htm_A 112 ETLKAAERLI-EEDFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAG 186 (268)
T ss_dssp HHHHHHHHHH-HTTCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESC
T ss_pred HHHHHHHHHH-HCCCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCC
Confidence 3344444444 4488876 3456655444443 33 7776 554443222 2567888876 677 99999888
Q ss_pred cCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHH
Q 005938 115 DGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (668)
Q Consensus 115 ~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlr 151 (668)
-.+.+.+..++++||++.++ |.-++..+...+..++.
T Consensus 187 I~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 187 LGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp CCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 88999999999999999874 54456666665555443
No 145
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=74.00 E-value=37 Score=35.10 Aligned_cols=123 Identities=8% Similarity=0.097 Sum_probs=84.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 005938 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (668)
Q Consensus 29 ~fP~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~I 107 (668)
-....+.|.+.-.++.....+...|....|.+..+...++.++.++.+++.+|.+|+..- +.+-..+..++.+ ..-+
T Consensus 5 ~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lL 82 (289)
T 1r8j_A 5 IVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVV 82 (289)
T ss_dssp -CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCC
T ss_pred ccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCccc
Confidence 345668899999999999999999988899999999999999999998888999998761 2235667777754 4568
Q ss_pred cEEEEeccCCHHHHHH--HHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 108 PVIMMSADGRVSAVMR--GIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 108 PVIILSa~sd~e~a~k--Al~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
|+|++-..+......- .+.....+.-+..-..++|...+.+++.+-
T Consensus 83 P~vil~~~~~~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 83 PAIVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp CEEEESCCC------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred cEEEeccCccccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 9988755322000000 112222333344456777877777776654
No 146
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=73.85 E-value=21 Score=33.68 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=49.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.+..++...... . +|.|+++-..|. ..+++.+++++...++||++.-+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~~-g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK-G--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH-T--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc-C--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 46777777665433 3 899998754442 3478888888755688988766655 77788888999998753
No 147
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=73.65 E-value=2.5 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=27.8
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..+++.+||.++|+ +..||.+.||+. |+|++.
T Consensus 22 ~~~~~~~lA~~~~~-S~~~l~r~fk~~-G~s~~~ 53 (120)
T 3mkl_A 22 HEWTLARIASELLM-SPSLLKKKLREE-ETSYSQ 53 (120)
T ss_dssp SCCCHHHHHHHTTC-CHHHHHHHHHHT-TCCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHc-CCCHHH
Confidence 47899999999998 457999999997 999863
No 148
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=73.45 E-value=9.1 Score=38.60 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEeccCC------HHHHHHHHHcCCc
Q 005938 80 FDVVLSDVHMPD--MD--------------------GFKLLEHIGLEM-DLPVIMMSADGR------VSAVMRGIRHGAC 130 (668)
Q Consensus 80 PDLVIlDI~MPd--mD--------------------G~ELLe~Ir~~~-~IPVIILSa~sd------~e~a~kAl~~GA~ 130 (668)
.|+|.+++-..+ .| .+++++++|... ++|+++|+-+.. ...+..+.+.|++
T Consensus 45 ~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~d 124 (262)
T 2ekc_A 45 TDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGID 124 (262)
T ss_dssp CSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCC
Confidence 898888874422 23 456677777655 899999853321 3456778999999
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 005938 131 DYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 131 dYLlKPis~eEL~~iLq~V 149 (668)
+++.-.+..+++...+..+
T Consensus 125 gvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 125 GFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp EEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 9999777888776655544
No 149
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=71.90 E-value=9.4 Score=38.50 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=49.8
Q ss_pred ceEEEEeCCC--CCCC--------------------HHHHHHHHhcc-CCCcEEEEeccC------CHHHHHHHHHcCCc
Q 005938 80 FDVVLSDVHM--PDMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGAC 130 (668)
Q Consensus 80 PDLVIlDI~M--PdmD--------------------G~ELLe~Ir~~-~~IPVIILSa~s------d~e~a~kAl~~GA~ 130 (668)
.|+|-+|+-. |-+| ++++++.||+. .++||++|+-.. ....+..+.+.||+
T Consensus 45 aD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGad 124 (268)
T 1qop_A 45 ADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVD 124 (268)
T ss_dssp CSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCC
T ss_pred CCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCC
Confidence 8999888743 2233 45667778766 789998875222 24678889999999
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 005938 131 DYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 131 dYLlKPis~eEL~~iLq~V 149 (668)
+++.-....+++...++.+
T Consensus 125 gii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 125 SVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp EEEETTCCGGGCHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHH
Confidence 9999877777766655544
No 150
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=71.89 E-value=1.3 Score=44.08 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 256 v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
...+++.++|.++|+ +..+|++.||+.+|+|+..
T Consensus 17 ~~~~~~~~la~~~~~-s~~~l~r~f~~~~g~s~~~ 50 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGY-SKWHLQRMFKDVTGHAIGA 50 (292)
T ss_dssp SSSCCCHHHHTTTSS-CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 468999999999998 5899999999999999863
No 151
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=71.24 E-value=32 Score=36.70 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 005938 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (668)
Q Consensus 32 ~girVLIVD----DDp~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI~MPd------------m 92 (668)
.+..++++| +.+...+.++.+-+.. +..| ..+.+.++|..+.+.. .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 456778876 3455556666665554 4444 3588999998887654 798888421 21 2
Q ss_pred CHHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 93 DG~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
..++++..+. ...++|||.--+-.+...+.+++.+||+....
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455555553 24579998877777888999999999988765
No 152
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.05 E-value=12 Score=36.64 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=67.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEE--eCCCC-CCC-HHHHHHH
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLEH 100 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIl--DI~MP-dmD-G~ELLe~ 100 (668)
..-||++. |-+..=...+..+|+..||+|... ...++.++.+++.+ ||+|.+ -..|. .+. --++++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHH
Confidence 34578777 667778888999999999998754 35678888888876 999999 87664 233 3446666
Q ss_pred Hhcc-C--CCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 101 IGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 101 Ir~~-~--~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+++. . ++||++--+.-..+++ -+.||+.|-..
T Consensus 169 l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 7643 2 5777664444454443 35699888543
No 153
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=69.59 E-value=25 Score=38.04 Aligned_cols=99 Identities=14% Similarity=0.268 Sum_probs=65.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC-----------CCCCCHH
Q 005938 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-----------MPDMDGF 95 (668)
Q Consensus 33 girVLIVD----DDp~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~-----------MPdmDG~ 95 (668)
+..++++| +.....+.++.+-+..+..|. .+.+.++|..+++.. .|.|++-+. -.+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aG---AD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT---CSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcC---CCEEEEeCCCCcCcccccccccchhHH
Confidence 56777775 233445555555444455544 688889888877643 798888321 0012345
Q ss_pred HHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 96 ELLe~Ir~---~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+++..+.. ..++|||.--+-.+...+.+++.+||+...+
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666642 3579999877778889999999999998765
No 154
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=68.98 E-value=33 Score=40.19 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=77.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir 102 (668)
...||+|. |.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 44678777 445555567777888889999753 35688888888776 999998876643 22 344666665
Q ss_pred cc-C-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 103 ~~-~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+. . +++| ++-+..-......+.+.|+++|+..--+..+....+.+.+.++
T Consensus 681 ~~G~~dv~V-ivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDILV-MCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSEE-EEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEE-EEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 43 2 4443 3343122222334678999999986567777777777666554
No 155
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=68.95 E-value=59 Score=30.70 Aligned_cols=113 Identities=9% Similarity=-0.026 Sum_probs=64.9
Q ss_pred CccEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEeCCCC----CCCHHHHHHHH
Q 005938 32 AGLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHI 101 (668)
Q Consensus 32 ~girVLIVDDDp--~ire~Lk~lL~~~gy~V~t----asng~EALelLre~~~~PDLVIlDI~MP----dmDG~ELLe~I 101 (668)
.|...+++-+.+ .....+.+.+++.+..+.. ..+..+.++.+.+.. .|+|.++.... ...+++.++++
T Consensus 76 ~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l 153 (211)
T 3f4w_A 76 AGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITM 153 (211)
T ss_dssp TTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHH
T ss_pred cCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHH
Confidence 345556665554 3334455555555666543 234434444444443 78887763110 11357788888
Q ss_pred hcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHH
Q 005938 102 GLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQ 147 (668)
Q Consensus 102 r~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq 147 (668)
++. +++||++-.+- ..+.+.++++.||+..+. +.-++.+-.+.+.
T Consensus 154 ~~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~ 204 (211)
T 3f4w_A 154 LKVRRKARIAVAGGI-SSQTVKDYALLGPDVVIVGSAITHAADPAGEARKIS 204 (211)
T ss_dssp HHHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHH
T ss_pred HHHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHH
Confidence 755 47888765555 477788999999998764 4445444333333
No 156
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=68.34 E-value=42 Score=34.31 Aligned_cols=115 Identities=11% Similarity=0.058 Sum_probs=75.4
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----
Q 005938 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~l--------L~~~-gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd---- 91 (668)
...+|++. |-+..=...+..+ |+.. ||+|.. ....++.++.+++.. +|+|.+-..|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 45677665 5666666677777 8898 999864 346778888888876 999999988865
Q ss_pred CCH-HHHHHHHhcc---CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 92 MDG-FKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 92 mDG-~ELLe~Ir~~---~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+.. -++++.+++. .+++|++=-+..+.+ .+.+.||+.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 222 2345556532 236655433333333 36678999888776777777665554443
No 157
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=68.24 E-value=16 Score=36.91 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEE-eCCCC---CCCHHHHHHHHhccCCCcEEEEeccCC
Q 005938 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLS-DVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (668)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIl-DI~MP---dmDG~ELLe~Ir~~~~IPVIILSa~sd 117 (668)
...+..++++.. ++.+. ++.+.+++..+.+. . .|+|+. -...+ +..+.++++++++..++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 344444444433 55544 45566666555443 3 576633 00001 123478888888777899999988888
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 005938 118 VSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 118 ~e~a~kAl~~GA~dYLlK 135 (668)
.+.+.+++..||+..+.=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999998753
No 158
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=68.12 E-value=21 Score=34.36 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=49.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++|||..-+- +.+.+.++++.||+.+..
T Consensus 116 sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 56788887766543 2799998764332 236788888865558898877766 788899999999998754
No 159
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=65.91 E-value=12 Score=38.29 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHHHHhcc-CCCcEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 95 FKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 95 ~ELLe~Ir~~-~~IPVIILSa~s------d~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+++++++|.. .++|+++|+-++ -...+.++.+.|+++.|.-....+|....++.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6777777765 789999886432 255688899999999999777778765555443
No 160
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=65.45 E-value=26 Score=40.49 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=75.5
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEeCCCCC----CCHH-H
Q 005938 33 GLRVLVV----DDDITCLRIL----EQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (668)
Q Consensus 33 girVLIV----DDDp~ire~L----k~lL~~~gy~V~t---asng~EALelLre~~~~PDLVIlDI~MPd----mDG~-E 96 (668)
..||++. |-+..=...+ ..+|+..||+|.. ....++.++.+.+.. +|+|.+...|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 5688887 4444333322 4678888999974 346789999988876 999999988875 3333 3
Q ss_pred HHHHHhcc-C--CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 005938 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (668)
Q Consensus 97 LLe~Ir~~-~--~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk~ 153 (668)
+++.|++. . +++|++=-+.-+.+. +-+.||+.|..-.....++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55566533 2 355555333334433 348999999887777777776666555443
No 161
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=64.39 E-value=47 Score=38.70 Aligned_cols=118 Identities=11% Similarity=0.005 Sum_probs=76.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHh
Q 005938 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (668)
Q Consensus 32 ~girVLIV----DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir 102 (668)
...||+|. |.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHH
Confidence 34678777 555555566777888889999753 35688888888776 999998876653 22 344666666
Q ss_pred cc-C-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 103 ~~-~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+. . +++| ++-+..-......+.+.|++.|+.--.+..++...+.+.+++
T Consensus 673 ~~G~~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGRPDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTCTTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCCCCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 43 2 4443 344322222234467899999998666777776666665544
No 162
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=64.31 E-value=76 Score=30.45 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=41.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEE
Q 005938 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 31 P~girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIl 85 (668)
+...+|+++--.+.+.+.+++++.+...++. ...+.+++++..++....+|+||+
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 3456899999999999988888887655654 456788888887764335898885
No 163
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=64.30 E-value=82 Score=32.24 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=54.1
Q ss_pred CCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC----C---CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 005938 57 LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP----D---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (668)
Q Consensus 57 gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP----d---mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~G 128 (668)
+..+. .+.+.+++...... ..|.|+++-.-+ + ...++++.+++...++|||+--+-.+.+.+.+++..|
T Consensus 118 gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~~G 194 (328)
T 2gjl_A 118 GVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALG 194 (328)
T ss_dssp TCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHT
T ss_pred CCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC
Confidence 44443 46777777765543 279888864222 1 2567888888766789999888887888999999999
Q ss_pred CcEEEe
Q 005938 129 ACDYLI 134 (668)
Q Consensus 129 A~dYLl 134 (668)
|+....
T Consensus 195 AdgV~v 200 (328)
T 2gjl_A 195 ADAINM 200 (328)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998765
No 164
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=63.10 E-value=34 Score=36.28 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=63.5
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCCH
Q 005938 32 AGLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (668)
Q Consensus 32 ~girVLIVD----DDp~ire~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~MP-----------dmDG 94 (668)
.+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++.. .|.|.+-+.-. +...
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG---aD~I~VG~~~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTT---CSEEEECSSCCTTCCHHHHTCBCCCH
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcC---cCEEEEecCCCcCCCcccccCCCCCc
Confidence 345566664 334455566665555455443 677888887776543 79888732100 1233
Q ss_pred HHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 95 FKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 95 ~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
++++..+. ...++|||.--+-.+.+.+.+++.+||+...+
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55555553 23478998877777889999999999998765
No 165
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=62.21 E-value=49 Score=33.15 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=51.2
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPd-------mDG~ELLe~Ir~~--~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
+|.+.+|+.+..+. .+|.|.+.-..|. .-|++.+++++.. .++|||.+.+- +.+.+.+.+..||+++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67888888776653 3899988543332 2378888888754 48999998776 6677889999999998
Q ss_pred Ee
Q 005938 133 LI 134 (668)
Q Consensus 133 Ll 134 (668)
..
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 166
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=61.52 E-value=51 Score=31.99 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe------CC
Q 005938 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------KP 136 (668)
Q Consensus 67 ~EALelLre~~~~PD-LVIlDI~MPdm-DG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl------KP 136 (668)
.+.++.+.+.. ++ ++++++.-.++ .| ++++++++...++|||...+-.+.+.+.++++.||++.+. .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44444444443 56 55666542221 23 8899999876789999988888888999999999999765 35
Q ss_pred CCHHHHHHHH
Q 005938 137 IREEELKNIW 146 (668)
Q Consensus 137 is~eEL~~iL 146 (668)
++.+++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6776665543
No 167
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=61.51 E-value=37 Score=34.25 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=64.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++|+.+.+. ..+++.++...-.|... -+..+..+.+.. .|++|+-..-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 456666666554 44555444321223322 233444555543 47777653212233566777664 357777
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
.. +.....+.+..|..+++..|-+.++|.+++..++..
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 42 224566778888899999999999999999988753
No 168
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.31 E-value=16 Score=33.70 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=32.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRR--CLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~--~gy~V~tasng~EALelLre~~~~PDLVIlDI 87 (668)
.|.||++||-|+. ..+..++.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 29 ~g~~vlliD~D~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ--MSLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTT--CHHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCC--CCHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 4689999998864 233344432 2456655544 334444444444599999997
No 169
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=59.79 E-value=59 Score=29.44 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 33 girVLIVDDDp-~ire~Lk~lL~~~gy~V~t-as--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
.++++|+.+.+ .....++.++...+ .|.. .. +.++..+++.. .|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 47888886643 35667777777766 5554 33 44455555542 5888885443 333666777764 4678
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
||.. . .....+.+ .|..+++..|-+.++|.+.+.+++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 6643 2 22344555 7888999999999999999988875
No 170
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.53 E-value=85 Score=31.75 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005938 32 AGLRVLVVDDDI-TCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (668)
Q Consensus 32 ~girVLIVDDDp-~ire~Lk~lL~~~gy~V~t-as--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I 107 (668)
..++++|+.+.+ .....++++....+ ++.. .. +.++..+.+.. -|++++-... +.-|..+++.+. ..+
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~ 355 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGA 355 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTC
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCC
Confidence 457888886554 44577777777766 4443 33 45555555542 5888876543 334666777764 467
Q ss_pred cEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 108 PVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|||. |.. ....+.+..| .+++..|-+.++|.+++.+++.
T Consensus 356 Pvi~-s~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 356 IPIA-SAV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-ESS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CeEE-cCC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 8775 322 2344556567 8999999999999999998876
No 171
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=55.38 E-value=30 Score=34.84 Aligned_cols=104 Identities=13% Similarity=0.196 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCCeEEE-----ECCHHHHHHHHHHcCCCceEEEE---------eCCCC---------CCCH------
Q 005938 44 TCLRILEQMLRRCLYNVTT-----CSQAAVALDILRERKGCFDVVLS---------DVHMP---------DMDG------ 94 (668)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~t-----asng~EALelLre~~~~PDLVIl---------DI~MP---------dmDG------ 94 (668)
...+.++.+-+..+..|.. +.+..+..+.+.+.. .|.|++ |.+.. +..|
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3344555544443444432 234456555565544 788777 33211 1112
Q ss_pred -HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEE------eCCCCHHHHHHHHHHH
Q 005938 95 -FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IKPIREEELKNIWQHV 149 (668)
Q Consensus 95 -~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYL------lKPis~eEL~~iLq~V 149 (668)
++++++++...++|||..-+-.+.+.+.+++..||+... ..|.-..++.+-+...
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~ 290 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPEL 290 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHH
Confidence 477888876668999987777889999999999988753 2344444444444433
No 172
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=55.09 E-value=14 Score=37.91 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHHHHHhcc-CCCcEEEEec------cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 005938 94 GFKLLEHIGLE-MDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (668)
Q Consensus 94 G~ELLe~Ir~~-~~IPVIILSa------~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~ 148 (668)
.+++++++|.. .++|+|+|+= +.-...+.++.+.|+++.|+-.+..+|.......
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 46777888765 7899999872 2335568899999999999976777775544433
No 173
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=54.53 E-value=89 Score=32.83 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=64.3
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------CC
Q 005938 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (668)
Q Consensus 33 girVLIVD----DDp~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI~MPd------------mD 93 (668)
+..++.++ +.....+.++++-+.. +..| ..+.+.++|..+++.. .|.|++... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG---aD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG---ADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344555666555554 4433 4678888888877643 798877432 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEE-EeCCC
Q 005938 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (668)
Q Consensus 94 G~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dY-LlKPi 137 (668)
-++++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-+++
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 234444442 224689998888889999999999999975 45554
No 174
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=54.47 E-value=84 Score=31.62 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHHHhCCCeE--EEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEeccCCHHHHHH
Q 005938 49 LEQMLRRCLYNV--TTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 49 Lk~lL~~~gy~V--~tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~--~~~IPVIILSa~sd~e~a~k 123 (668)
+++.|..-...+ .... +..+.++.+.... +|.||+|++=...+.-++...++. ....++++=....+...+.+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 455565432322 2223 3455666666554 999999998776666566555542 23456666555667788999
Q ss_pred HHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 005938 124 GIRHGACDYLI-KPIREEELKNIWQHV 149 (668)
Q Consensus 124 Al~~GA~dYLl-KPis~eEL~~iLq~V 149 (668)
+++.|++..++ |--+.++++.+.+.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999988644 444788888776654
No 175
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=54.27 E-value=84 Score=34.73 Aligned_cols=101 Identities=12% Similarity=0.181 Sum_probs=65.7
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC-----------CC
Q 005938 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (668)
Q Consensus 32 ~girVLIVDD----Dp~ire~Lk~lL~~~g-y~V--~tasng~EALelLre~~~~PDLVIlDI~MPd-----------mD 93 (668)
.+..++++|. .....+.++++-+... ..| ..+.+.++|..+++.. .|.|++.+.-.. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCC
Confidence 4677888874 3344455555555432 233 3677888888877654 788887442111 22
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 94 G~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.++++..+. ....+|||.--+-.+...+.+|+.+||+..+.=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 345554442 334699998888889999999999999987663
No 176
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.13 E-value=31 Score=30.43 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=23.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH
Q 005938 40 DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (668)
Q Consensus 40 DDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre 75 (668)
|.|..-++.+++-++..||+|..+++.++|+..+++
T Consensus 84 dqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 84 DQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 445555555666666667777777777777776664
No 177
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=53.90 E-value=18 Score=35.96 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=36.4
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHH---HHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQH 148 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd~e---~a~kAl~~GA~dYLlKPis~eEL~~iLq~ 148 (668)
+++++++++...++|+++++ +.+.. .+..+.+.||+++++-....+++.+.+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~-~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLS-YYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEEC-CSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEe-cCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 56778888877789998875 22221 13348899999999865565666555544
No 178
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.87 E-value=58 Score=31.59 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MPdmD---G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+..+.+.+.. .| |.+.|....... -+++++++++..++|||+.....+.+.+.+++..||+..++
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4555555555443 45 556676543322 24567777777789999999889999999999999988776
No 179
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=53.40 E-value=54 Score=32.17 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCceEEE-EeCCCCC-CC--HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 66 AAVALDILRERKGCFDVVL-SDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 66 g~EALelLre~~~~PDLVI-lDI~MPd-mD--G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..+..+.+.+.. .+.|+ +++.-.+ .. .++++++++...++|||...+-.+.+.+.++++.||++.+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445545554443 56555 4553211 11 278999998777899999998888899999999999997653
No 180
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=52.98 E-value=75 Score=30.27 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe------
Q 005938 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVI-lDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl------ 134 (668)
+..+.++.+.+.. .|.|+ .++...+. -.++.+++++...++|||+-.+-.+.+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 3445455555443 67665 45543221 146788888765689999888777778899999999998764
Q ss_pred CCCCHHHHHHHH
Q 005938 135 KPIREEELKNIW 146 (668)
Q Consensus 135 KPis~eEL~~iL 146 (668)
.+.+.+++.+.+
T Consensus 233 ~~~~~~~~~~~l 244 (253)
T 1h5y_A 233 RVLSIAQVKRYL 244 (253)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 344555554443
No 181
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=52.47 E-value=17 Score=37.05 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCcEEEEecc------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~------sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+++++++|...++|||+|+-+ .....+..+.+.|++++|.=.+..+++...+..+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 577888876688999998422 2234567789999999998777777766655544
No 182
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=52.45 E-value=1.8e+02 Score=30.95 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=60.8
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC------------
Q 005938 32 AGLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM------------ 92 (668)
Q Consensus 32 ~girVLIVDD----Dp~ire~Lk~lL~~~-gy~V~--tasng~EALelLre~~~~PDLVIlDI~MPdm------------ 92 (668)
++..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|.+.+. |+.
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aG---aD~I~Vg~g-~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCG---ADIIKAGIG-GGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTT---CSEEEECCS-SSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcC---CCEEEEcCC-CCcCccccccCCccH
Confidence 4567888872 233333444333322 34443 478888888877643 799888543 321
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.-++.+.++..... |||.--+-.+...+.+|+.+||+...+
T Consensus 187 p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 187 PMLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp CHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 23444444432222 888777777889999999999987765
No 183
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=51.69 E-value=48 Score=31.58 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=45.8
Q ss_pred EECCHHHHHHHHHHcCCCceEEEE----eCCCC----CCCHHHHHHHHhccCC-CcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 62 TCSQAAVALDILRERKGCFDVVLS----DVHMP----DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIl----DI~MP----dmDG~ELLe~Ir~~~~-IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
.+.+..++...... . +|.|++ +.... ...|++.+++++...+ +||++.-+-. .+.+.++++.||+.+
T Consensus 122 s~~t~~e~~~a~~~-g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED-G--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH-T--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC-C--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 35777776555433 3 799886 32111 1236888888875555 8988766655 667778888999987
Q ss_pred Ee
Q 005938 133 LI 134 (668)
Q Consensus 133 Ll 134 (668)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 184
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=51.56 E-value=1.1e+02 Score=29.57 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC------
Q 005938 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK------ 135 (668)
Q Consensus 66 g~EALelLre~~~~PD-LVIlDI~MPd-mDG--~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK------ 135 (668)
..+.++.+.+.. ++ ++++++.-.+ ..| ++++++++...++|||.-.+-.+.+.+.++++.||+..+.=
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 445555554443 66 5556664322 122 78999998767899999888888899999999999987642
Q ss_pred CCCHHHHHHH
Q 005938 136 PIREEELKNI 145 (668)
Q Consensus 136 Pis~eEL~~i 145 (668)
|++.+++.+.
T Consensus 231 ~~~~~~~~~~ 240 (253)
T 1thf_D 231 EIDVRELKEY 240 (253)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 4455555443
No 185
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=51.55 E-value=9 Score=37.74 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.3
Q ss_pred CCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 257 PGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 257 ~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
..++++++|+++|. +..||.+.||+ +|+|++.
T Consensus 184 ~~~sl~~lA~~~~~-S~~~l~r~fk~-~G~t~~~ 215 (276)
T 3gbg_A 184 RNWRWADICGELRT-NRMILKKELES-RGVKFRE 215 (276)
T ss_dssp SCCCHHHHHHHHTC-CHHHHHHHHHT-TTCCHHH
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHH-cCCCHHH
Confidence 37899999999998 77899999987 9999863
No 186
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=51.40 E-value=1.1e+02 Score=31.60 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcC
Q 005938 55 RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (668)
Q Consensus 55 ~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MP-----dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~G 128 (668)
..+..|. .+.+.++|..+.+. ..|.|+++-.-. ....++++.+++...++|||.-.+-.+.+.+.+++..|
T Consensus 122 ~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~~G 198 (326)
T 3bo9_A 122 ENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALG 198 (326)
T ss_dssp HTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHT
T ss_pred HcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhC
Confidence 3344443 46777777765543 278888864221 23567888888766689999888888899999999999
Q ss_pred CcEEEe
Q 005938 129 ACDYLI 134 (668)
Q Consensus 129 A~dYLl 134 (668)
|+....
T Consensus 199 A~gV~v 204 (326)
T 3bo9_A 199 AEAVQM 204 (326)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 998765
No 187
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=50.89 E-value=64 Score=30.72 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=50.2
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcE
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~-----MPd----mDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~d 131 (668)
..+.+.+++..+... . .|+|.+-.. ..+ ..+++++++++...++|||...+-.+.+.+.++++.||+.
T Consensus 124 ~~~~t~~e~~~~~~~-G--~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~ 200 (223)
T 1y0e_A 124 ADIATVEEAKNAARL-G--FDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200 (223)
T ss_dssp EECSSHHHHHHHHHT-T--CSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred ecCCCHHHHHHHHHc-C--CCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCE
Confidence 456777887765443 2 688764321 011 1246678888765689999888887999999999999998
Q ss_pred EEeC
Q 005938 132 YLIK 135 (668)
Q Consensus 132 YLlK 135 (668)
.+.=
T Consensus 201 v~vG 204 (223)
T 1y0e_A 201 SVVG 204 (223)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8763
No 188
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=50.75 E-value=70 Score=30.48 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 64 SQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 64 sng~EALelLre~~~~PD-LVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+..+..+.+.+.. .| |.+.|...... ..+++++++++..++|+++.....+.+.+.++++.||+...+
T Consensus 33 ~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 45566666666543 67 55666543222 246777888766789999877778888899999999887764
No 189
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=50.64 E-value=79 Score=30.69 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=50.5
Q ss_pred HHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCcEEEEecc
Q 005938 49 LEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSAD 115 (668)
Q Consensus 49 Lk~lL~~~gy~V~t-as--ng~EALelLre~~~~PD-LVIlDI~MPdmD---------G~ELLe~Ir~~~~IPVIILSa~ 115 (668)
+.+.+++.+..+.. ++ +..+.++.+... .| +|.+ +..++.. .++.+++++...++||++-.+-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI 200 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGV 200 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeec
Confidence 34444444544432 22 445666666544 24 5544 3335432 3567777776567998887777
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 005938 116 GRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 116 sd~e~a~kAl~~GA~dYLlK 135 (668)
...+.+.+.+..||+.++.=
T Consensus 201 ~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 201 SKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 77788999999999999864
No 190
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=50.61 E-value=2.9 Score=44.44 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=26.3
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 34 irVLIVDDD--p~ire~Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI 87 (668)
++|....+. ..+.+.++..-+..++.|.. ..+..+.+.........|||++++.
T Consensus 7 ltvw~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 7 LVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred EEEEeCCCCchHHHHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 445433333 23333343333333555543 3444555544433334599998764
No 191
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=50.32 E-value=1.1e+02 Score=31.84 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC---------CC-------CCHHHHHHHHhccCCCcEEEEeccCCHH
Q 005938 57 LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---------PD-------MDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (668)
Q Consensus 57 gy~V-~tasng~EALelLre~~~~PDLVIlDI~M---------Pd-------mDG~ELLe~Ir~~~~IPVIILSa~sd~e 119 (668)
+..| ..+.+.+++...... ..|.|+++-.. +. ...++++++++...++|||..-+-.+.+
T Consensus 145 g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~ 221 (369)
T 3bw2_A 145 GTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGG 221 (369)
T ss_dssp TCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHH
T ss_pred CCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHH
Confidence 4443 356777777665543 28999885421 10 2348889988766689998877777899
Q ss_pred HHHHHHHcCCcEEEe
Q 005938 120 AVMRGIRHGACDYLI 134 (668)
Q Consensus 120 ~a~kAl~~GA~dYLl 134 (668)
.+.+++..||+....
T Consensus 222 ~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 222 QIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999987654
No 192
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=50.17 E-value=71 Score=28.17 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=52.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPV 109 (668)
.+++|.++|.++...+.++. .++.+.... .-.+.++.+.-. ..|+||+-+.-.. .-..++..++. .+.++|
T Consensus 29 ~g~~v~vid~~~~~~~~~~~----~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~i 101 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELRE----RGVRAVLGNAANEEIMQLAHLE--CAKWLILTIPNGY-EAGEIVASARAKNPDIEI 101 (140)
T ss_dssp TTCCEEEEESCHHHHHHHHH----TTCEEEESCTTSHHHHHHTTGG--GCSEEEECCSCHH-HHHHHHHHHHHHCSSSEE
T ss_pred CCCCEEEEECCHHHHHHHHH----cCCCEEECCCCCHHHHHhcCcc--cCCEEEEECCChH-HHHHHHHHHHHHCCCCeE
Confidence 35779999999876655443 466654322 122344433222 3788887653211 12334444553 466776
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
|... .+.++.....+.|++..+.
T Consensus 102 iar~--~~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 102 IARA--HYDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred EEEE--CCHHHHHHHHHCCCCEEEC
Confidence 6655 3455566677889886654
No 193
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=50.02 E-value=1.1e+02 Score=33.52 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=65.5
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCC--------------CC
Q 005938 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (668)
Q Consensus 32 ~girVLIVD----DDp~ire~Lk~lL~~~-gy~V~--tasng~EALelLre~~~~PDLVIlDI~--------------MP 90 (668)
.+..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+.+.. .|.|.+-.. +|
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~ 342 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRP 342 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCC
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCcc
Confidence 345555552 2233445555555554 44443 477888887776653 687777332 11
Q ss_pred CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE-EeCCC
Q 005938 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (668)
Q Consensus 91 dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY-LlKPi 137 (668)
....++++.+++...++|||.--+-.+...+.+++.+||+.. +-.++
T Consensus 343 ~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 343 QGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred chhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 123466677776656899998888888899999999999876 44444
No 194
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=49.95 E-value=51 Score=32.39 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..+..+.+.+.. .| |.+.|....+. .-+++++++++...+|||+.....+.+.+.+++..||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555543 55 55567654321 1278889998778899999877788888999999999988764
No 195
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=49.60 E-value=1e+02 Score=33.77 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=65.5
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 005938 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (668)
Q Consensus 32 ~girVLIVD----DDp~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI~MPd------------m 92 (668)
++..++++| +.+...+.++++-+.. +..| ..+.+.++|..++... .|.|.+-+. |+ .
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~vg~g-~Gs~~~t~~~~g~g~ 315 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAG---ADAVKVGIG-PGSICTTRIVAGVGV 315 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTCHHHHHTCBCC
T ss_pred cccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcC---CCEEEECCC-CCcCCCccccCCCCc
Confidence 356677776 4455556666666554 3333 3477888887776643 798887321 11 1
Q ss_pred CHHHHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 93 DGFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 93 DG~ELLe~Ir~---~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
-.++++..+.. ..++|||.--+-.+.+.+.+++.+||+...+
T Consensus 316 p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 316 PQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp CHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 23455555532 3479999888888899999999999998765
No 196
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=49.20 E-value=95 Score=32.11 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHhcc
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-------------------------MPD----------MDGFKLLEHIGLE 104 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~-------------------------MPd----------mDG~ELLe~Ir~~ 104 (668)
+..+.+..||+..+... .|+|.+.-+ |+. ...++++++++..
T Consensus 129 vv~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 34577788887777653 677777643 111 1235677777665
Q ss_pred CCCcEEE--EeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHH
Q 005938 105 MDLPVIM--MSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVV 150 (668)
Q Consensus 105 ~~IPVII--LSa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vl 150 (668)
..+|||+ -.+-.+.+.+.+++..||+.++. |.-++.+..+.+...+
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 6788774 44455888999999999999875 4445554444444433
No 197
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=48.26 E-value=92 Score=32.56 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=70.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp-~ire~Lk~lL~~~gy~V~-tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.++++||.+.+ ..++.++++....+-.|. ... ..++..+.+.. .|++++-... +.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHH--CCCCE
Confidence 57888887654 466777777776544444 333 33333355543 4888775442 333556677664 36787
Q ss_pred EEEeccCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~G---------A~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|. |. .....+.+..| ..+++..|-+.++|.+++.+++.
T Consensus 393 I~-s~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VV-AR---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EE-ES---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EE-eC---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 76 32 23455667777 78999999999999999988873
No 198
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=47.99 E-value=1.8e+02 Score=29.74 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=60.9
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 005938 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 49 Lk~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir--~~~~IPVIILSa~sd~e~a~kA 124 (668)
+++.|..-...+.. -.+..+.++.+.... +|.|++|.+=...+--.+...++ .....++++=+...+...+..+
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 55556542213332 233345556665544 99999998654444444444443 2235678887777788889999
Q ss_pred HHcCCcEEEe-CCCCHHHHHHHHHH
Q 005938 125 IRHGACDYLI-KPIREEELKNIWQH 148 (668)
Q Consensus 125 l~~GA~dYLl-KPis~eEL~~iLq~ 148 (668)
++.|++..++ |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999987544 33468887766554
No 199
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=47.91 E-value=10 Score=39.68 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCCCHHHHHhhhcccchhHHHHHHHHHhCCCCCC
Q 005938 256 VPGLTRENVASHLQEINLQKFRLYLKRLNGVSQQG 290 (668)
Q Consensus 256 v~gLti~EVAshVGy~D~qYFrk~FKK~~GvT~q~ 290 (668)
...+++.++|.++|+ +.+||.+.||+.+|+|++.
T Consensus 319 ~~~~~~~~~a~~~~~-s~~~l~r~f~~~~g~s~~~ 352 (412)
T 4fe7_A 319 CKGIKVDQVLDAVGI-SRSNLEKRFKEEVGETIHA 352 (412)
T ss_dssp GGTCCHHHHHHHTTC-CHHHHHHHHHHHHSSCHHH
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHH
Confidence 468999999999997 6789999999999999863
No 200
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=47.88 E-value=79 Score=33.52 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCC---------C--CCCHHHHHHHHhc---cCC
Q 005938 44 TCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIGL---EMD 106 (668)
Q Consensus 44 ~ire~Lk~lL~~~-gy~V~--tasng~EALelLre~~~~PDLVIlDI~M---------P--dmDG~ELLe~Ir~---~~~ 106 (668)
...+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|++-..- . +.-.++.+..++. ..+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 4444554444444 44444 46777777665532 38988882210 0 1223555555542 357
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+|||...+-.+.+.+.+++.+||+....
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999888888899999999999998765
No 201
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=47.41 E-value=4.7 Score=41.11 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=34.5
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHHcCCCceEEEEe
Q 005938 33 GLRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSD 86 (668)
Q Consensus 33 girVLIVDDD--p~ire~Lk~lL~~~gy~V~tasng~E--ALelLre~~~~PDLVIlD 86 (668)
+.|||||+++ +.....|.+.|+..+|.|+......- -.+.+. . +|+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~--yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--K--QDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--T--CSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--c--CCEEEEc
Confidence 3589999988 66778899999998999887554321 112222 2 8998886
No 202
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=47.30 E-value=1.4e+02 Score=26.76 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=65.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005938 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~--~--~--gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~ 106 (668)
.++++|+.+.+.. ..+++++. . . ...+.-.-+.++..++++. .|++|+-.. .+.-|..+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677888654321 23333333 2 1 2333334455666666654 488886333 2333666777764 46
Q ss_pred CcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 005938 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (668)
Q Consensus 107 IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlrk 152 (668)
+|||.. +.....+.+..|..+++. +-+.++|.+++.+++..
T Consensus 122 ~PvI~~----~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAV----NEGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEE----SSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEe----CCCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 787753 223455667778889999 99999999999988754
No 203
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=47.01 E-value=1.2e+02 Score=30.02 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.|++++.. |.-++|.+. ..+|||....... ..+.++.| .+++..+ +.++|.+.+.+++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57887653 444556553 4688886522122 23456778 8899877 99999999998875
No 204
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=46.73 E-value=2.1e+02 Score=28.71 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 005938 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 49 Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir--~~~~IPVIILSa~sd~e~a~kA 124 (668)
+++.|..-. +.+.......+.++.+.... +|.|++|.+=.-.+--.+...++ .....++++=+...+...+..+
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~ 86 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQV 86 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 455555422 23333333445556555544 99999998654444444444443 2235677776667788889999
Q ss_pred HHcCCcEEEe-CCCCHHHHHHHHHH
Q 005938 125 IRHGACDYLI-KPIREEELKNIWQH 148 (668)
Q Consensus 125 l~~GA~dYLl-KPis~eEL~~iLq~ 148 (668)
++.|++..++ |--+.++++.+++.
T Consensus 87 l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 87 LDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999987543 33478887766554
No 205
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=46.51 E-value=78 Score=30.70 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc-----C-CcEEE
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~----MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~-----G-A~dYL 133 (668)
+..+....+.+.. ++ |+++++. +.+. .++++++++...++|||...+-.+.+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 4455544454433 67 5666653 2333 3889999876668999998888888999999988 9 98876
Q ss_pred e------CCCCHHHHHHH
Q 005938 134 I------KPIREEELKNI 145 (668)
Q Consensus 134 l------KPis~eEL~~i 145 (668)
. .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 46777766553
No 206
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=45.89 E-value=32 Score=33.89 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeC---CC-CCC-CHHHHHHHHhccCCCcEE--EEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDV---HM-PDM-DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI---~M-Pdm-DG~ELLe~Ir~~~~IPVI--ILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
+..+.++.+.+.. .|+|=+|+ +. |.. .|.++++.||...+.|+. +++. +-..++..+.+.||+....-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 4455666665433 56665665 21 232 377999999876666765 5663 3345688899999998876655
Q ss_pred --CHHHHHHHHHHH
Q 005938 138 --REEELKNIWQHV 149 (668)
Q Consensus 138 --s~eEL~~iLq~V 149 (668)
..+++.+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 445555555554
No 207
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=44.49 E-value=1.4e+02 Score=26.25 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=48.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc--CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~--~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.|||.||-| +....+ +.-.|.++..+.+.+++.+.+++. ..++.||+++-++-.. --+.+++++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 478999999 433333 333477888888888776655532 1248899998776552 33455666545668877
Q ss_pred EEec
Q 005938 111 MMSA 114 (668)
Q Consensus 111 ILSa 114 (668)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7544
No 208
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=43.01 E-value=1.7e+02 Score=29.19 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=56.4
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIV-DDDp~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
++++++ .+++..++.+++.+... -.|.... ...+..+++.. -|++++.- .|+ ++|.+. ..+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~a--~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGAA--LGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHHH--TTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHHH--cCCCEE
Confidence 566665 55555556666654321 2344442 22343444432 58887653 354 445543 578988
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+.......... ++.| .+++.. .+.++|.+.+.+++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333332 4556 467774 499999999988874
No 209
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=42.84 E-value=1.2e+02 Score=31.73 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=66.7
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCSQAAVA-LDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp-~ire~Lk~lL~~~gy~V~-tasng~EA-LelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.++++||.+.+ ...+.++++....+-.|. ...-..+. .+.+.. .|++++-.. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 56777775543 456667776666543443 33322333 344443 477776543 2333556666654 36787
Q ss_pred EEEeccCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHHH
Q 005938 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~sd~e~a~kAl~~G---------A~dYLlKPis~eEL~~iLq~Vlr 151 (668)
|.. . .....+.+..| ..+++..|-+.++|.+++..++.
T Consensus 394 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVR-R---TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EEC-C---CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 753 2 23455667777 88999999999999999988873
No 210
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=42.71 E-value=1.1e+02 Score=28.51 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=49.7
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V-~tasng~EALelLre~~-~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
..+|.+.+|..||-++...+..++.+...+. .+ ....++.+.+..+.... ..+|+|++|...+ +-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 3456567999999999999999998887654 24 35678877776555421 3499999996532 234555555
No 211
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=42.59 E-value=1.2e+02 Score=30.96 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005938 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (668)
Q Consensus 33 girVLIVDDD---p~ire~Lk~lL~~~gy--~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~ 105 (668)
.++++|+.+. ....+.+++++...+. .|.... +.++..+.+.. -|++|+-.. .+.-|.-+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4677777651 1234555566655432 344333 33555565554 477776443 2233566777664 4
Q ss_pred CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 106 ~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.+|||.. .... ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 349 G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 6787753 3322 3455667888999999999999999988875
No 212
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=41.61 E-value=1.1e+02 Score=31.36 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCC
Q 005938 56 CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGA 129 (668)
Q Consensus 56 ~gy~V~-tasng~EALelLre~~~~PDLVIlDI~M-----PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA 129 (668)
.++.|. .+.+.+++..+.+ .. .|.|+++-.- .....++++++++...++|||..-+-.+.+.+.+++..||
T Consensus 109 ~g~~v~~~v~~~~~a~~~~~-~G--aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~GA 185 (332)
T 2z6i_A 109 AGIIVIPVVPSVALAKRMEK-IG--ADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFMLGA 185 (332)
T ss_dssp TTCEEEEEESSHHHHHHHHH-TT--CSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHTTC
T ss_pred cCCeEEEEeCCHHHHHHHHH-cC--CCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCC
Confidence 344443 4667776655544 22 7988886321 1234688888887667899998888888999999999999
Q ss_pred cEEEe
Q 005938 130 CDYLI 134 (668)
Q Consensus 130 ~dYLl 134 (668)
+....
T Consensus 186 dgV~v 190 (332)
T 2z6i_A 186 EAVQV 190 (332)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 88654
No 213
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=41.28 E-value=71 Score=31.18 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MP---dmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+..+..+.+.+.. .| |.+.|+.-. ...-++++++|++...+|||+--.-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4455555555543 56 455676422 12237889999877899999988888889999999999887654
No 214
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=41.22 E-value=23 Score=33.48 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EeccC-CHHHHHHHHHcCCcEEEeCCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADG-RVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~-~~IPVII--LSa~s-d~e~a~kAl~~GA~dYLlKPis 138 (668)
+.+++++.++......| ++++.++- .+|.++++.|++. ++.|+++ +. ++ -..++..+.+.||+....-+..
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~-~di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKT-MDAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEE-CSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEe-cCccHHHHHHHHhCCCCEEEEeccC
Confidence 45666666655431123 35665542 3577888888755 3778775 43 22 2345888999999988777754
Q ss_pred H-HHHHHHHHH
Q 005938 139 E-EELKNIWQH 148 (668)
Q Consensus 139 ~-eEL~~iLq~ 148 (668)
. +.+..+++.
T Consensus 88 ~~~~~~~~~~~ 98 (207)
T 3ajx_A 88 DDSTIAGAVKA 98 (207)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 4 455544443
No 215
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=40.78 E-value=1.8e+02 Score=31.97 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=65.8
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCCC------------C
Q 005938 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (668)
Q Consensus 32 ~girVLIVD----DDp~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI~MPd------------m 92 (668)
++..++++| +.....+.++++-+.. ...| ..+.+.++|..++... .|.|++.+. |+ .
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~ 317 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 317 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCC
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCc
Confidence 356677776 4455666666666654 3333 3577888887777654 798887532 11 1
Q ss_pred CHHHHHHHHhc---cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 93 DGFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 93 DG~ELLe~Ir~---~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.-++++..+.. ...+|||.--+-.+...+.+|+.+||+...+=
T Consensus 318 p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 318 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 23444454432 34699998777888999999999999987663
No 216
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=40.59 E-value=1.2e+02 Score=29.37 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc---CCcEEEe---
Q 005938 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI--- 134 (668)
Q Consensus 65 ng~EALelLre~~~~PD-LVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~---GA~dYLl--- 134 (668)
+..+..+.+.+.. +| |+++++.-.+. -.++++++++...++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 4455545554443 67 55577642221 13788899876668999998888888999999999 9998764
Q ss_pred ---CCCCHHHHHH
Q 005938 135 ---KPIREEELKN 144 (668)
Q Consensus 135 ---KPis~eEL~~ 144 (668)
.|++..++.+
T Consensus 225 l~~~~~~~~~~~~ 237 (244)
T 1vzw_A 225 LYAKAFTLEEALE 237 (244)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHcCCCCHHHHHH
Confidence 3555555444
No 217
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=40.42 E-value=21 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
.+||++|...+++..|||..||.+. +--++.++++
T Consensus 20 ~~IL~lL~~~g~sa~eLAk~LgiSk-~aVr~~L~~L 54 (82)
T 1oyi_A 20 CEAIKTIGIEGATAAQLTRQLNMEK-REVNKALYDL 54 (82)
T ss_dssp HHHHHHHSSSTEEHHHHHHHSSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 6789999988999999999999865 5566777776
No 218
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=40.24 E-value=1.5e+02 Score=28.36 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHc---CCcEEEe----
Q 005938 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI---- 134 (668)
Q Consensus 66 g~EALelLre~~~~PD-LVIlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~---GA~dYLl---- 134 (668)
..+.++.+.+.. +| |+++++.-.+. -.+++++++++..++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 355555555443 67 45567654322 24788888876678999988888888999999998 9998764
Q ss_pred --CCCCHHHHHH
Q 005938 135 --KPIREEELKN 144 (668)
Q Consensus 135 --KPis~eEL~~ 144 (668)
.|....++++
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 3555555443
No 219
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=39.94 E-value=59 Score=33.25 Aligned_cols=78 Identities=9% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCeEEEECCH--------HHHHHHH----HHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHH
Q 005938 57 LYNVTTCSQA--------AVALDIL----RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 57 gy~V~tasng--------~EALelL----re~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kA 124 (668)
+..+..++++ +++...+ ++.. ||+||.=---|..-|-.-.+++-...++|.|+++...... +.++
T Consensus 32 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~ 108 (283)
T 1qv9_A 32 DVEFRVVGTSVKMDPECVEAAVEMALDIAEDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDE 108 (283)
T ss_dssp SEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHhhhhhhhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHH
Confidence 4566666655 2344443 4555 9999987666677788888887667899999999766555 6688
Q ss_pred HHcCCcEEEeCCC
Q 005938 125 IRHGACDYLIKPI 137 (668)
Q Consensus 125 l~~GA~dYLlKPi 137 (668)
++..-.+||+-+.
T Consensus 109 l~~~g~GYIivk~ 121 (283)
T 1qv9_A 109 MEEQGLGYILVKP 121 (283)
T ss_dssp HHHTTCEEEEETT
T ss_pred HHhcCCcEEEEec
Confidence 8888888876543
No 220
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=39.83 E-value=2e+02 Score=29.05 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=65.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~-gy~V~-tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~ 106 (668)
|...|||-||--=..-+..+...+... ++++. .|+ +.+.|-+..++.. ..-+..|+ -+++ ..++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~ell----~~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEML----ASDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHHH----HCSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHHh----cCCC
Confidence 345689999998776665555555543 56665 444 3444444444432 22233332 2232 2355
Q ss_pred CcEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 005938 107 LPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (668)
Q Consensus 107 IPVIILSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlr 151 (668)
+-+|+++... -.+.+.+|++.|-.=|+-||+ +.+|..++++.+-+
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 6666655544 357789999999999999997 67788777765533
No 221
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=39.17 E-value=1.1e+02 Score=34.67 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEeCCCCC-CC-HHHHHHHHhc
Q 005938 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (668)
Q Consensus 33 girVLIV----DDDp~ire~Lk~lL~~~gy~V~ta---sng~EALelLre~~~~PDLVIlDI~MPd-mD-G~ELLe~Ir~ 103 (668)
+-+||++ |-+..=...+..+|+..||+|... ...++.++.+++.. ||+|.+-..|.. ++ --++++.|+.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578777 666777888889999999999754 35778888888776 999999887743 22 2235556653
Q ss_pred -cCCCcEEEEeccCCHHHHHHHH---HcCCcEEEeC
Q 005938 104 -EMDLPVIMMSADGRVSAVMRGI---RHGACDYLIK 135 (668)
Q Consensus 104 -~~~IPVIILSa~sd~e~a~kAl---~~GA~dYLlK 135 (668)
..++||++--+....+++..-+ -.||+.|-..
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQN 211 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCS
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECC
Confidence 3578876655445554432111 1288877653
No 222
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=39.10 E-value=2.2e+02 Score=29.90 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--eEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 35 RVLVVDDDITCLRILEQMLR----RCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~----~~gy--~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
-|||-|.+....-.+...++ .... ....+.+.+++.+.++.. .|+|.+|-. +--++-+.++....-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~aG---aD~I~LDn~----~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISAG---ADIIMLDNF----SLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTT---CSEEEEESC----CHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCC----CHHHHHHHHHHhCCCC
Confidence 36666665443323333332 2222 235789999998888753 799999973 3323322233222224
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
.|..|+--+.+.+.+..+.|++.+-
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 5678888889999888899986553
No 223
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=39.04 E-value=1.2e+02 Score=29.20 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=48.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~---~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
+|.+-+|..||-++...+..++.+...++ .|. ...++.+.+..+... ...+|+|++|...+ +-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHH
Confidence 35567999999999999999999987765 243 567777776655321 23599999996422 234455554
No 224
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=38.82 E-value=1.4e+02 Score=29.73 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=54.3
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIV-DDDp~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
++++++ .+++..++.+++.+... -.|... -...+..+++.. -|++++.- .|. ++|.+ ...+|||
T Consensus 239 ~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~----ad~~v~~S-----g~~-~lEA~--a~G~PvI 305 (384)
T 1vgv_A 239 IQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNH----AWLILTDS-----GGI-QEEAP--SLGKPVL 305 (384)
T ss_dssp EEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----CSEEEESS-----STG-GGTGG--GGTCCEE
T ss_pred eEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHh----CcEEEECC-----cch-HHHHH--HcCCCEE
Confidence 555554 33444555555554321 133332 122444444433 36776653 122 22322 2468988
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..-...... +.++.| .+++..| +.++|.+.+..++.
T Consensus 306 ~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 306 VMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp EESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred EccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 653323322 335678 8999988 99999999998875
No 225
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.77 E-value=31 Score=29.07 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhccc--chhHHHHHHHHHhCCCC
Q 005938 248 KRILELMNVPGLTRENVASHLQEI--NLQKFRLYLKRLNGVSQ 288 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~--D~qYFrk~FKK~~GvT~ 288 (668)
+.|+.|+. .|++..|||..+|.+ ..+++.+..++.+|+..
T Consensus 35 ~~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 35 CLILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 45677766 899999999999984 34444444555555543
No 226
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=38.65 E-value=73 Score=31.81 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=62.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCC------CCCCHHHHHHHHhcc
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLE 104 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~M------PdmDG~ELLe~Ir~~ 104 (668)
.++++|+.+.+. ...++.+.....-.|.... +.++..+++.. -|++|+-... ++.-|..+++.+.
T Consensus 229 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-- 301 (394)
T 3okp_A 229 DAQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-- 301 (394)
T ss_dssp TCEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--
T ss_pred CeEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--
Confidence 356666655432 2333333322222333332 33565565554 4787775443 1334667777764
Q ss_pred CCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 105 ~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..+|||. |.... ..+.+..| .+++..|-+.++|.+++..++.
T Consensus 302 ~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 302 CGVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 4678876 33222 33445667 8999999999999999998865
No 227
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=38.54 E-value=2.4e+02 Score=27.30 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=48.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~---~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
+|.+.+|..||-++...+..++.+...++ .|. ...++.+.+..+... ...||+|++|... .+-.++++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 45567999999999999999999887765 343 567777776655321 2349999999653 2344555555
No 228
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=38.50 E-value=64 Score=30.58 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=51.1
Q ss_pred HHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHc
Q 005938 52 MLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRH 127 (668)
Q Consensus 52 lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~ 127 (668)
..+..+..+ ..+.+..++....+. ..|.|.+ .| +..|++.+++++... ++||+...+-. .+.+.++++.
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~ 168 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDA 168 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHH
T ss_pred HHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHc
Confidence 334445442 247788888766543 3798886 22 123678888886543 48988877665 6778888999
Q ss_pred CCcEEEeC
Q 005938 128 GACDYLIK 135 (668)
Q Consensus 128 GA~dYLlK 135 (668)
||+.+..=
T Consensus 169 Ga~gv~vG 176 (212)
T 2v82_A 169 GCAGAGLG 176 (212)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEC
Confidence 99998743
No 229
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=38.48 E-value=1.5e+02 Score=28.67 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 65 QAAVALDILRERKGCFDVV-LSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 65 ng~EALelLre~~~~PDLV-IlDI~MPdm---DG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..+..+.+.+.. .|.| +.|..-... ..+++++++++..++|+++--.-.+.+.+.++++.||+..++=
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4455555555443 5644 455432221 2356777787767899999878888899999999999887763
No 230
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=38.21 E-value=23 Score=36.72 Aligned_cols=70 Identities=10% Similarity=-0.019 Sum_probs=46.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC-CCCHHHHHHHH
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHI 101 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MP-dmDG~ELLe~I 101 (668)
.+-++.+||-++...+.|++.+....-......++.+++..+......+|||++|==-. ..+.-++++.|
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 44689999999999999988887633223356788888876654333589999994221 12334455555
No 231
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=38.13 E-value=1.2e+02 Score=29.01 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCcEEEEeccC
Q 005938 47 RILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (668)
Q Consensus 47 e~Lk~lL~~~-gy~V~-tasng~EALelLre~~~~PDLV---IlDI~MPd-----mDG~ELLe~Ir~~~~IPVIILSa~s 116 (668)
+.++.+-+.. +..+. .+.+.+++....... .|+| +..+. +. ...++++++++.. ++|||...+-.
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~G---ad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~ 196 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQAG---IDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIH 196 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcC---CCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCC
Confidence 3444433332 34443 567778877666543 7887 33221 21 1246888888766 89999888888
Q ss_pred CHHHHHHHHHcCCcEEEe
Q 005938 117 RVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 117 d~e~a~kAl~~GA~dYLl 134 (668)
+.+.+.++++.||+.++.
T Consensus 197 s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 197 SPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 899999999999998865
No 232
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=37.79 E-value=1.1e+02 Score=28.52 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~~--~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
..+|.+.+|..||-++...+..++.+...+.. |. ...+..+.+..+.... ..+|+|++|... .+-.++++.+
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~ 160 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEES 160 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHH
Confidence 34566789999999999999999998876542 43 5667777766554210 249999998742 2233455554
No 233
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=37.71 E-value=1.4e+02 Score=29.59 Aligned_cols=106 Identities=24% Similarity=0.344 Sum_probs=61.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.++++|+.+.+ .+.++++++..+ -.|......++..+.+.. -|++++-... +.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHH--CCCCEE
Confidence 35666665543 134444444333 234444433344444443 4777765432 333666677664 367887
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeC-CCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlK-Pis~eEL~~iLq~Vlr 151 (668)
....... .+.+..|..+++.. |.+.++|.+.+..++.
T Consensus 299 ~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 6433222 23455677889997 8999999999998875
No 234
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=36.71 E-value=1.1e+02 Score=30.46 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.++++++++..++||++=.+-.+.+.+.+++..||+..+.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888888766889887666677899999999999998874
No 235
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=36.68 E-value=1.2e+02 Score=26.39 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=45.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~tasn-g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
+++|.++|.++...+.+.. .++.+....- -.+.++.+. -...|+||+-+. .+..-..++..++......||.
T Consensus 29 g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~~--~~~~d~vi~~~~-~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSLD--LEGVSAVLITGS-DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp TCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHSC--CTTCSEEEECCS-CHHHHHHHHHHHHHHCCCCEEE
T ss_pred CCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhCC--cccCCEEEEecC-CHHHHHHHHHHHHHhCCceEEE
Confidence 5678888888765544432 3555443221 123333221 123788887543 1111233344444333445555
Q ss_pred EeccCCHHHHHHHHHcCCcEEEe
Q 005938 112 MSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 112 LSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.... .++.....+.|++..+.
T Consensus 102 ~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 102 RVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp EESC--GGGHHHHHHTTCSEEEE
T ss_pred EEcC--hhHHHHHHHcCCCEEEC
Confidence 4433 33455566788764443
No 236
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=36.47 E-value=46 Score=32.09 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~---V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
+|.+-+|..||-++...+..++.+...++. |. ...++.+.+..+. ...||+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999887654 54 4556666554331 234999999975433 33455554
No 237
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=36.33 E-value=42 Score=32.83 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+.+++.++..+ ||+| .+ ||+.-- ++++++++..++|||.=-.-.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--Ei-LPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--EL-LPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--EE-ECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--EE-CCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35777787766 9977 33 587543 788999877889988766668899999999999987654
No 238
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=36.02 E-value=1.5e+02 Score=31.16 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=71.5
Q ss_pred ccEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCH
Q 005938 33 GLRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG 94 (668)
Q Consensus 33 girVLIVDD--Dp------------~ire~Lk~lL~~~gy--~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG 94 (668)
..+++|+.+ .+ ...+.+++++...+. .|.... +.++..+.+.......|++++-..- +.-|
T Consensus 294 ~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~-Eg~~ 372 (499)
T 2r60_A 294 ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFY-EPFG 372 (499)
T ss_dssp CEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSC-BCCC
T ss_pred ceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECccc-CCCC
Confidence 357888877 22 126777777776543 254443 3466666666421002888874432 3335
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
+-+++.+. ..+|||... .....+.+..|..+++..|-+.++|.+++..++.
T Consensus 373 ~~~lEAma--~G~PvI~s~----~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 373 LAPVEAMA--SGLPAVVTR----NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp SHHHHHHH--TTCCEEEES----SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred cHHHHHHH--cCCCEEEec----CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 66777664 468887532 2335566778888999999999999999988764
No 239
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=35.94 E-value=76 Score=31.35 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.+++++++++..++||++-.+-.+.+.+.+++..||+.++.=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556888887667899999888888999999999999998864
No 240
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=35.49 E-value=40 Score=31.87 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EeccCCHHHHHHHHHcCCcEEEeCCCCH
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~-~~IPVII--LSa~sd~e~a~kAl~~GA~dYLlKPis~ 139 (668)
+.+++++.++......|+| .+-+|- ..|+++++.||+. +++||.+ ++.+.....+.++.+.||+..++-....
T Consensus 11 ~~~~~~~~~~~~~~~~dii--e~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~ 88 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDII--EVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTD 88 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEE--EECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhcCccEE--EeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCC
Confidence 3445555544332124532 222243 3578899999865 6788754 3333333348899999999888744433
Q ss_pred -HHHHHHHHHH
Q 005938 140 -EELKNIWQHV 149 (668)
Q Consensus 140 -eEL~~iLq~V 149 (668)
+.+...++.+
T Consensus 89 ~~~~~~~~~~~ 99 (211)
T 3f4w_A 89 VLTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 4445544443
No 241
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=35.28 E-value=2.4e+02 Score=29.29 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=44.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
..+.+.+++.+.++.. .|+|.+|- |+--++-+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 214 VEvdtlde~~eAl~aG---aD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 214 IEVETLDQLRTALAHG---ARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEESSHHHHHHHHHTT---CEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEeCCHHHHHHHHHcC---CCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 4688999988888753 89999996 33333333333222233566888888888888888999544
No 242
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.27 E-value=1.4e+02 Score=27.94 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=48.2
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~~--~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
..+|.+.+|..+|-++...+..++.+...+. .+. ...+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 89 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 89 LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 3445567999999999999999998887654 343 4567777666554311 24999999864 33334455555
No 243
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=34.80 E-value=30 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCCHHHHHhhhcc-cchhHHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQE-INLQKFRLYLK 281 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy-~D~qYFrk~FK 281 (668)
+|.+++..-|+|..++|..+|. .+.++++++.+
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 12 KLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 3445556679999999999995 56677776665
No 244
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.75 E-value=2e+02 Score=29.38 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEeCCC---CCCCHHHHHHHHh-cc-CCCcEEEEeccCCHH
Q 005938 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIG-LE-MDLPVIMMSADGRVS 119 (668)
Q Consensus 46 re~Lk~lL~~~gy~V-~tasng~EALelLre~~~~PDLVIlDI~M---PdmDG~ELLe~Ir-~~-~~IPVIILSa~sd~e 119 (668)
.+.+.......|..+ ..+.+.+|+...+.. .+|+|=+.-+- -..| ++...+|. .. .++++|.-++-.+.+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 344444445567765 467888887665532 37888665321 1222 44555553 22 368899999999999
Q ss_pred HHHHHHHcCCcEEEe
Q 005938 120 AVMRGIRHGACDYLI 134 (668)
Q Consensus 120 ~a~kAl~~GA~dYLl 134 (668)
.+.++.++||+.+|+
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999986
No 245
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=34.58 E-value=66 Score=34.80 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=30.0
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEeC
Q 005938 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 33 girVLIVDDDp---~ire~Lk~lL~~~gy~V~tas---ng~----EALelLre~~~~PDLVIlDI 87 (668)
|.||++||-|+ ...+.+...-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 78999999986 233333333333355554432 222 344444433 389999998
No 246
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=34.48 E-value=1.9e+02 Score=30.14 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
...+.+.+|+.+.++.. .|+|.+|-. +--++-+.++....-..|..|+--+.+.+.+-.+.|++.+
T Consensus 211 eVEv~tl~e~~eAl~aG---aDiImLDn~----s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 211 AIECDNISQVEESLSNN---VDMILLDNM----SISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEESC----CHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCHHHHHHHHHcC---CCEEEECCC----CHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 44789999999998854 899999953 3222322232222234677888888888888778888644
No 247
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=34.02 E-value=1.4e+02 Score=28.57 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005938 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 29 ~fP~girVLIVDDDp~ire~Lk~lL~~~gy--~V~-tasng~EALelLre~~--~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
.+|.+.+|..||-++...+..++.+...+. .+. ...++.+.+..+.... ..+|+|++|... .+-.++++.+
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 345567999999999999998888876554 233 5667777666554321 349999999642 2234455554
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=33.94 E-value=57 Score=33.23 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=31.7
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCC
Q 005938 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (668)
Q Consensus 32 ~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmD 93 (668)
.|.+|+++|.|+. ..+.+....+..+..+....+..+.-..+... ..+|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 4678999988863 22333333333344333334444333333322 348999999 55554
No 249
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=33.47 E-value=1.2e+02 Score=29.79 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=37.1
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 80 PDLVIlDI~MPdmDG-------~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.|.|++...-|+..| ++-++++|+. .+++ |.+.+--+.+.+.++.+.||+.++.
T Consensus 135 ~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 135 IDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp CSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 688887666677655 4445666543 3455 4455555678899999999998764
No 250
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=33.38 E-value=3.3e+02 Score=26.94 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEeccCCHHHHHHH
Q 005938 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (668)
Q Consensus 49 Lk~lL~~~g--y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir--~~~~IPVIILSa~sd~e~a~kA 124 (668)
+++.|..-. +.+.......+.++.+.... +|.|++|.+=.-.+--++...++ .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~g--aD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLAG--FDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTSC--CSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 455555422 22222334445555555443 99999998654333323333333 2245678887777888889999
Q ss_pred HHcCCcEEE-eCCCCHHHHHHHHHH
Q 005938 125 IRHGACDYL-IKPIREEELKNIWQH 148 (668)
Q Consensus 125 l~~GA~dYL-lKPis~eEL~~iLq~ 148 (668)
++.|+++.+ .|--+.++++.+.+.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 999998754 444478888665543
No 251
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=33.22 E-value=84 Score=29.57 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEeCCCC
Q 005938 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (668)
Q Consensus 29 ~fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~--~~~PDLVIlDI~MP 90 (668)
.++.+.+|.-||-++...+..++.+...+.. |. ...++.+.+..+... ...+|+|++|....
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred hCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 3455679999999999999999988876542 43 566777665544320 03499999997443
No 252
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=32.69 E-value=99 Score=33.33 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmD-G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.++.+.+.. +|+|++|.....-. -.++++++++..++|||+=. -.+.+.+..+.+.||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 44555555544 89999997654322 26788888765578877522 25678899999999998877
No 253
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=32.52 E-value=9.5 Score=43.76 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=1.8
Q ss_pred hHHHHH
Q 005938 428 LMDILH 433 (668)
Q Consensus 428 ~~~~~~ 433 (668)
+-+.+|
T Consensus 73 ~~~~~~ 78 (727)
T 4b8c_D 73 MKKYLA 78 (727)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 333333
No 254
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=32.11 E-value=2.8e+02 Score=29.96 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=62.3
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEeCCCC-----------CCC
Q 005938 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD 93 (668)
Q Consensus 32 ~girVLIVDDD----p~ire~Lk~lL~~~-gy~V--~tasng~EALelLre~~~~PDLVIlDI~MP-----------dmD 93 (668)
.|..+++++-. ....+.++.+-+.. +..| ..+.+.++|..+.+. ..|.|.+...-. +..
T Consensus 248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p 324 (494)
T 1vrd_A 248 AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVP 324 (494)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCC
T ss_pred hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCcc
Confidence 35566665322 34555566655554 3443 356778888665543 279888744211 122
Q ss_pred HHHHHHHHh---ccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 94 G~ELLe~Ir---~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.++++..+. ...++|||.-.+-.+...+.+++..||+...+
T Consensus 325 ~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 325 QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 344444443 23579999888888999999999999987654
No 255
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.86 E-value=1.4e+02 Score=29.72 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=52.4
Q ss_pred CeEEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 58 YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 58 y~V~tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.-|....+.++++++++.. ....++|=+.++ .-++++.++++++. ++ .+|-.-.--+.+.+..|++.||+ |+.-
T Consensus 37 v~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~-fIvs 112 (232)
T 4e38_A 37 IPVIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQPE-MLIGAGTILNGEQALAAKEAGAT-FVVS 112 (232)
T ss_dssp EEEECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTT-CEEEEECCCSHHHHHHHHHHTCS-EEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCC-CEEeECCcCCHHHHHHHHHcCCC-EEEe
Confidence 4556677777777766542 123565555444 55689999999754 44 34444445578999999999996 5555
Q ss_pred CCCHHHHH
Q 005938 136 PIREEELK 143 (668)
Q Consensus 136 Pis~eEL~ 143 (668)
|-...++.
T Consensus 113 P~~~~~vi 120 (232)
T 4e38_A 113 PGFNPNTV 120 (232)
T ss_dssp SSCCHHHH
T ss_pred CCCCHHHH
Confidence 75444443
No 256
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=31.71 E-value=65 Score=27.91 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005938 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (668)
Q Consensus 31 P~girVLIVDDD----p~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~ 105 (668)
|+.||||+|=+. ......|++.+...++++. .+.+..++-+.+ ..+|+||+-..+... ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 445788777332 2677788888887776432 233333333322 238999998776543 33333322234
Q ss_pred CCcEEEEec
Q 005938 106 DLPVIMMSA 114 (668)
Q Consensus 106 ~IPVIILSa 114 (668)
++||+++..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988765
No 257
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=31.57 E-value=69 Score=33.32 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=43.4
Q ss_pred HHHHHHHHhccCCCcEEEE--eccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMM--SADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIIL--Sa~sd~e~a~kAl~~GA~dYLl-----KPis~eEL~~iLq~Vlrk 152 (668)
.++++++|++...+|||++ .+-.+.+.+.++++.||++.++ +--++....+.+..++..
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 3788888877788999877 3334688999999999999864 444567776666666543
No 258
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=31.34 E-value=57 Score=33.32 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=48.3
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHH
Q 005938 32 AGLRVLVVDDD-----ITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (668)
Q Consensus 32 ~girVLIVDDD-----p~ire~Lk~lL~~~g-y~V~tasng~-----EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~ 100 (668)
+.+|||||... +.....|.++|+..+ |.|+...+.. +.+. ..-..+|+||++..+...+- +..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~-~~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPE-ETNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCH-HHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCH-HHHHH
Confidence 45899999762 566788999999887 9998876631 2221 11234999999886554432 22222
Q ss_pred Hh--ccCCCcEEEEec
Q 005938 101 IG--LEMDLPVIMMSA 114 (668)
Q Consensus 101 Ir--~~~~IPVIILSa 114 (668)
|. -.....+|++-+
T Consensus 79 l~~yV~~Ggglv~~H~ 94 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYHA 94 (281)
T ss_dssp HHHHHHTTCEEEEEGG
T ss_pred HHHHHHcCCCEEEEec
Confidence 21 123566666543
No 259
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=31.25 E-value=1.5e+02 Score=25.77 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-c
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-P 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasn--g~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~I-P 108 (668)
..++++|+.+.+. ...+++++...+..+.. .. .++..+++.. .|++|+-.. .+.-|+.+++.+. ..+ |
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vP 101 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVP 101 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCc
Confidence 3578888887654 46677777766655554 32 3455555432 688887554 3344677777764 455 8
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
||..+...... +.+..+. ++..|-+.++|...+.+++.
T Consensus 102 vi~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 102 VIANSPLSATR---QFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EEECCTTCGGG---GGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred EEeeCCCCchh---hhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 87633222221 2222332 38889999999999998875
No 260
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.15 E-value=75 Score=31.96 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCC----CCC-CHHHHHHHHhccC-CCcEEE-EeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLEM-DLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~M----Pdm-DG~ELLe~Ir~~~-~IPVII-LSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
+-.++++.+.+.. .|.+=+|++- |.. =|.++++.||... +.|+.+ |-..+-..++..+.++||+....-.-
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4467777777653 5666666632 333 3889999998654 778655 44444566888899999987766554
Q ss_pred CHHHHHHHHHHH
Q 005938 138 REEELKNIWQHV 149 (668)
Q Consensus 138 s~eEL~~iLq~V 149 (668)
..+++.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445666666655
No 261
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=30.77 E-value=3.3e+02 Score=28.11 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=44.1
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEE
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dY 132 (668)
...+.+.+|+.+.++.. .|+|.+|-.-| -++-+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 202 eVEv~tl~ea~eAl~aG---aD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAAK---ADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 34789999999988753 89999997333 22222222212223566788888888888888888654
No 262
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=30.11 E-value=29 Score=32.84 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=33.5
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 005938 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (668)
Q Consensus 34 ir-VLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIl 85 (668)
|| |+|||........+.+.|++.+..+..+...+..++.+.... +|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 45 999997766666788888888888776665322233333323 787777
No 263
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=29.81 E-value=2.6e+02 Score=26.95 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=47.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 28 e~fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
..+|.+.+|..||-++...+..++.+...+.. |. ...++.+.+..+. ....+|+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 44565789999999999999999999876542 43 5667766554332 112599999987432 334455555
No 264
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=29.65 E-value=87 Score=32.40 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHHhccCCCcEEEEeccCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 97 LLEHIGLEMDLPVIMMSADGRVSAVMRG-IRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 97 LLe~Ir~~~~IPVIILSa~sd~e~a~kA-l~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
++|.+. ..+|||.-+...+...+.+. ...| ++..+-+.++|.+.+.+++.
T Consensus 295 ~lEAmA--~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 295 LLEPTC--WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp CHHHHT--TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 445442 57888852223343333333 3444 56667789999999988875
No 265
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=29.43 E-value=3.2e+02 Score=28.33 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=48.2
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEe-ccCCHH
Q 005938 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVIMMS-ADGRVS 119 (668)
Q Consensus 58 y~V~tasng~EALelLre~~~~PDLVIlDI~MP--dmDG----------~ELLe~I----r-~~~~IPVIILS-a~sd~e 119 (668)
+.+..+.+.++|..+.... ||+|++..-+- +.-| .+.++.+ + ..+++.|+.-. .-.+.+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4566888999999887654 89999875321 3222 3344444 1 23554333222 336788
Q ss_pred HHHHHHHc--CCcEEEeCC
Q 005938 120 AVMRGIRH--GACDYLIKP 136 (668)
Q Consensus 120 ~a~kAl~~--GA~dYLlKP 136 (668)
++..++++ |+++|+.-.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 99999999 999999864
No 266
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=29.28 E-value=2.1e+02 Score=29.62 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=56.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEeccCCH-------------HHHHHHHHc
Q 005938 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRV-------------SAVMRGIRH 127 (668)
Q Consensus 62 tasng~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir~~~~IPVIILSa~sd~-------------e~a~kAl~~ 127 (668)
++.+.++++...+...+...|. .++..++. -++.+++.+++..++||.+|.-...- +.+..+.++
T Consensus 45 c~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~ 123 (287)
T 3iwp_A 45 CVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLY 123 (287)
T ss_dssp EESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHc
Confidence 5778888888877654223322 22333444 37889999887778999877654433 467788899
Q ss_pred CCcEEEeC---C---CCHHHHHHHHHH
Q 005938 128 GACDYLIK---P---IREEELKNIWQH 148 (668)
Q Consensus 128 GA~dYLlK---P---is~eEL~~iLq~ 148 (668)
||+++..= | ++.+.++..+..
T Consensus 124 GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 124 GADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp TCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred CCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 99998765 3 455666665554
No 267
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.08 E-value=87 Score=33.55 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=56.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng--~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IP 108 (668)
.++.|++||.++...+.++ ..++.+.. .++ .+.|+.+.-. ..|+||+-+.-+ ..-..++..++. .++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~agi~--~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAGAA--KAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTTTT--TCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcCCC--ccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 3678999999987765554 34666543 333 2444443322 379888866321 123344555553 46777
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 109 VIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
||+.+. +.+.+....++||+..+.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 776654 456677778899987664
No 268
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=28.95 E-value=2.8e+02 Score=24.48 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy--~V-~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999998888876553 23 35667776555443223359999998532233455566665
No 269
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=28.89 E-value=4.9e+02 Score=26.69 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=64.9
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCCCC--C-----------
Q 005938 34 LRVLVVD----DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM--D----------- 93 (668)
Q Consensus 34 irVLIVD----DDp~ire~Lk~lL~~~-gy~V~--tasng~EALelLre~~~~PDLVIlDI~MPdm--D----------- 93 (668)
..++.++ +.....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|++..+ ++. +
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCch
Confidence 3444454 4455666676666654 23332 366788887777654 688887432 221 1
Q ss_pred -HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 94 -GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 94 -G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
-++++.+++...++|||.-.+-.+...+.+|+.+||+...+
T Consensus 197 ~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 197 WQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp CHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 36677777655689999888888899999999999998644
No 270
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=28.82 E-value=3.9e+02 Score=26.99 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=63.6
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--eEEEEC-----CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005938 33 GLRVLVVDDD----ITCLRILEQMLRRCLY--NVTTCS-----QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (668)
Q Consensus 33 girVLIVDDD----p~ire~Lk~lL~~~gy--~V~tas-----ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~I 101 (668)
.++++|+.+. +.....++++.+..+. .|.... +.++..+.+.. .|++++-... +.-|.-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 4677777765 3344555555544332 344432 12345555543 4777764332 33356666766
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 102 r~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
. ..+|||.. . .....+.+..|..+++.. +.++|.+.+..++.
T Consensus 337 a--~G~PvI~~-~---~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGR-A---VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEE-S---CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEc-c---CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 4 46887753 2 234556677788999996 89999999988765
No 271
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=28.69 E-value=35 Score=27.39 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
.+|.++...-|+|.+++|..+|. +.++++++.+
T Consensus 13 ~~ik~~R~~~gltq~elA~~~gi-s~~~is~~E~ 45 (78)
T 3qq6_A 13 QRIKQYRKEKGYSLSELAEKAGV-AKSYLSSIER 45 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHc
Confidence 34445555578999999999997 3455555443
No 272
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=28.39 E-value=4.8e+02 Score=26.71 Aligned_cols=88 Identities=18% Similarity=0.036 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHHcCCCceEEEEeCC---------------------CCCCCHHHHH
Q 005938 45 CLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSDVH---------------------MPDMDGFKLL 98 (668)
Q Consensus 45 ire~Lk~lL~~~gy~V~--ta---sng~EALelLre~~~~PDLVIlDI~---------------------MPdmDG~ELL 98 (668)
..+.++.+-+.....|. .+ .+.++|..+.+. . .|.|++.-+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~-G--ad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA-G--AAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH-T--CSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc-C--CCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34555555444444333 23 456666555443 3 787777421 1234567777
Q ss_pred HHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 99 EHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 99 e~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
..++.. .++|||.-.+-.+.+.+.+++..||+...+=
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 777543 4799999999999999999999999987653
No 273
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=28.14 E-value=4e+02 Score=27.03 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
+..+.++.+.+.. +|+|.+....| .++++.++.. .++++... .+.+.+.++.+.|++.+++-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3457777777655 89999987665 5788888754 67777532 45677888999999988874
No 274
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=27.97 E-value=4.2e+02 Score=27.60 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=53.3
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIV-DDDp~ire~Lk~lL~~~gy~V~tas--ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
++++++ .+++..++.+++.+... -.|.... ...+...++.. -|+||++- .|.. +|. ....+|+|
T Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~----ad~vv~~S-----Gg~~-~EA--~a~g~PvV 324 (403)
T 3ot5_A 258 TELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRK----SYLVFTDS-----GGVQ-EEA--PGMGVPVL 324 (403)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----EEEEEECC-----HHHH-HHG--GGTTCCEE
T ss_pred ceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC-----ccHH-HHH--HHhCCCEE
Confidence 455554 44455555555444321 1233332 23344444433 37777663 1222 222 23578988
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 111 ILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
++-...+.. +.++.| ..++..+ +.++|.+.+..++.
T Consensus 325 ~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 325 VLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp ECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred EecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 763333332 346777 5677766 89999999988875
No 275
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.77 E-value=77 Score=30.39 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=47.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc--CCCcEEEEeccCCHHHHHHHHHcCCc
Q 005938 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (668)
Q Consensus 61 ~tasng~EALelLre~~~~PDLVIlDI~MPd--------mDG~ELLe~Ir~~--~~IPVIILSa~sd~e~a~kAl~~GA~ 130 (668)
..|.+.+|+.... . ..|.|.++--.|. .-|++.++.++.. .++|||.+-+-. .+.+.++++.||.
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 3677888876653 2 2799987654332 1267888888654 589988866554 6678899999999
Q ss_pred EEEe
Q 005938 131 DYLI 134 (668)
Q Consensus 131 dYLl 134 (668)
+.-.
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8743
No 276
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=27.20 E-value=11 Score=41.42 Aligned_cols=100 Identities=10% Similarity=-0.095 Sum_probs=54.2
Q ss_pred ChHHHHHHHHcCCC--------CCCC-ccccccccC----------------CCCCCccEEEEE--eCCHHHHHHHHHHH
Q 005938 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVP----------------DQFPAGLRVLVV--DDDITCLRILEQML 53 (668)
Q Consensus 1 la~~~~lv~~~gGs--------~~~~-~~~~d~~~~----------------e~fP~girVLIV--DDDp~ire~Lk~lL 53 (668)
|++++++++.|||. +.+. .+.+.+.++ ...+.|-+|.|. ++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57899999999995 2222 333332222 123456555443 33333334455554
Q ss_pred Hh-----CCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 54 RR-----CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 54 ~~-----~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
.. -++.+....++.+++...+.....|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 43 255666665544433332221112333 577899999999887765
No 277
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.99 E-value=37 Score=28.63 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|.+++|..+|.+ .++++++.+
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~GiS-~~tis~iE~ 59 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVGVS-KSTFAKLGK 59 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 677788888999999999999974 344444443
No 278
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=26.93 E-value=1.7e+02 Score=27.98 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=35.8
Q ss_pred CHHHHHHHHhccCCCcEEEEeccCCH-HHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 005938 93 DGFKLLEHIGLEMDLPVIMMSADGRV-SAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (668)
Q Consensus 93 DG~ELLe~Ir~~~~IPVIILSa~sd~-e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~V 149 (668)
.|++++++|+...+.|+.+..-..+. .++..+.+.||+...+-.. ..+++...++.+
T Consensus 55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQI 114 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHH
T ss_pred cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHH
Confidence 47899999986545665443333343 4788899999988765444 334444444443
No 279
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=26.91 E-value=1.4e+02 Score=29.69 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=49.0
Q ss_pred EEEECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 005938 60 VTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 60 V~tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis 138 (668)
|....+.++++.+.+.. ....++|=+.++- -++++.++.|++...-.+|-.-.--+.+.+.++++.||. |+.-|..
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~ 94 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRT--EAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGL 94 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSC
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCC
Confidence 33444555555544432 1225555444444 468888888875433356655566689999999999996 5555754
Q ss_pred HHHHH
Q 005938 139 EEELK 143 (668)
Q Consensus 139 ~eEL~ 143 (668)
..++.
T Consensus 95 ~~evi 99 (217)
T 3lab_A 95 TPELI 99 (217)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 44443
No 280
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=26.73 E-value=53 Score=32.92 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MP--dmDG~ELLe~Ir~~~~IPVIILSa~-sd~e~a~kAl~~GA~dYLl 134 (668)
.++++.+.+.. .|+|.+-+.-. -.+-+++++++|+ .++|+|+++.+ ... ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=26.68 E-value=26 Score=35.84 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=32.3
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEE---CCHH----HHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTC---SQAA----VALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp---~ire~Lk~lL~~~gy~V~ta---sng~----EALelLre~~~~PDLVIlDI 87 (668)
.+.+|+++|-|+ ...+.++.+....++.+... .+.. ++++.++.. .+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 467999999983 44444444444445655443 2333 344444433 389999998
No 282
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=26.59 E-value=48 Score=33.67 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCCcEEEEec------cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 94 GFKLLEHIGLEMDLPVIMMSA------DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 94 G~ELLe~Ir~~~~IPVIILSa------~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
-+++++++|.. +|+|+|+= +.-.....+|.+.|+++.|+--+..+|... +...++
T Consensus 78 ~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~ 138 (252)
T 3tha_A 78 VFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECE 138 (252)
T ss_dssp HHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHH
Confidence 45566666543 89998873 344556788999999999998787777444 333333
No 283
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=26.58 E-value=4.2e+02 Score=27.70 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhcc---C--CCcEEEEeccCCHHHHHHHHHcCCcEEEe-CCCC
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---M--DLPVIMMSADGRVSAVMRGIRHGACDYLI-KPIR 138 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~---~--~IPVIILSa~sd~e~a~kAl~~GA~dYLl-KPis 138 (668)
...+.++.+.... +|.|++|.+=.-.+--.+.+.|+.. . ..++++=+...+...+..+++.|+.+.++ |--+
T Consensus 51 ~~p~~~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~s 128 (339)
T 1izc_A 51 PSTFVTKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVET 128 (339)
T ss_dssp CCHHHHHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCC
T ss_pred CCHHHHHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCC
Confidence 3445555555544 9999999965444443444444321 1 26778877777888899999999987544 3347
Q ss_pred HHHHHHHHHHH
Q 005938 139 EEELKNIWQHV 149 (668)
Q Consensus 139 ~eEL~~iLq~V 149 (668)
.++++.+.+.+
T Consensus 129 aee~~~~~~~~ 139 (339)
T 1izc_A 129 VEEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888766553
No 284
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=26.47 E-value=5.2e+02 Score=26.24 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=62.5
Q ss_pred ccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 33 GLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 33 girVLIVDDDp~ir-e~Lk~lL~~~gy~V~-tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.+||.||.--..-+ ..+..+....++++. .++ +.+.+.+..+... ...+ .|+ +.+-..+++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTCTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcCCCCCE
Confidence 48999999877766 344444443366665 343 4444444444432 2222 332 22222345555
Q ss_pred EEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 005938 110 IMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (668)
Q Consensus 110 IILSa~--sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vl 150 (668)
|+++.. .-.+.+.+|++.|..=++-||+ +.++..++++.+-
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~ 137 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVAR 137 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 555543 3466788999999999999997 6778877776553
No 285
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=26.42 E-value=3.3e+02 Score=28.94 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHHcCCCceEEEEeCCC-CC------CCHHH
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM-PD------MDGFK 96 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~g---y------~V-~tasng~EALelLre~~~~PDLVIlDI~M-Pd------mDG~E 96 (668)
-+|.+||-|+...+..++.+.... + .+ ....|+.+.++.+......||+||+|.-- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 589999999999999988875321 1 23 35678888777553223459999999754 31 23456
Q ss_pred HHHHH
Q 005938 97 LLEHI 101 (668)
Q Consensus 97 LLe~I 101 (668)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 286
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=26.35 E-value=56 Score=32.36 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=60.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE--CCHHHHHHHHHHcCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTC--SQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHI 101 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~ta--sng~EALelLre~~~~PDLVIlDI~---------MPdmDG~ELLe~I 101 (668)
.++++|+.+.+ ....++++.+..+-.|... -+..+..+.+.. .|++++-.. ..+.-|.-+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 35666665532 2233333333322233322 233444555543 477776443 1233466677766
Q ss_pred hccCCCcEEEEeccCCHHHHHHHHHc--CCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 102 GLEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 102 r~~~~IPVIILSa~sd~e~a~kAl~~--GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
. ..+|||.. .. ....+.+.. |..+++..| +.++|.+.+.+++.
T Consensus 263 a--~G~PvI~s-~~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 V--SGTPVVGT-GN---GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp H--TTCCEEEC-CT---TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred h--cCCCEEEc-CC---CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 4 46787753 22 235566677 788899999 99999998877643
No 287
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=26.15 E-value=42 Score=25.32 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 4 ~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 36 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTT-QQSIEQLEN 36 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 345566777899999999999974 555555543
No 288
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=26.14 E-value=2.2e+02 Score=27.45 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=60.9
Q ss_pred HHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEeCCC----CC-CCHHHHHHHHh---ccCCCcEEEEeccCCHHH
Q 005938 51 QMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHM----PD-MDGFKLLEHIG---LEMDLPVIMMSADGRVSA 120 (668)
Q Consensus 51 ~lL~~~gy~V~t--asng~EALelLre~~~~PDLVIlDI~M----Pd-mDG~ELLe~Ir---~~~~IPVIILSa~sd~e~ 120 (668)
..|+..|+.+.. +..+...+..+.... ||.|=+|-.+ .. .....+++.+. ...++.|| ..+-.+.+.
T Consensus 146 ~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~~~ 222 (259)
T 3s83_A 146 KTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENAEM 222 (259)
T ss_dssp HHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSHHH
T ss_pred HHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCHHH
Confidence 345555887653 556667788888776 9999999532 11 12333455442 23455544 566677778
Q ss_pred HHHHHHcCCcE----EEeCCCCHHHHHHHHHH
Q 005938 121 VMRGIRHGACD----YLIKPIREEELKNIWQH 148 (668)
Q Consensus 121 a~kAl~~GA~d----YLlKPis~eEL~~iLq~ 148 (668)
...+.++|++. |+.||...+++...++.
T Consensus 223 ~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 223 AHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 88888899874 47799999999876653
No 289
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.12 E-value=52 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 21 ~~l~~~r~~~glsq~elA~~~gis-~~~is~~e~ 53 (83)
T 2a6c_A 21 IVLQEHLRNSGLTQFKAAELLGVT-QPRVSDLMR 53 (83)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 345566777899999999999874 445555443
No 290
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=26.10 E-value=5.2e+02 Score=26.09 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCccEEEEEeCCH-HHHHHHHHHHHh-CCCeEE-EECCH-HHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005938 31 PAGLRVLVVDDDI-TCLRILEQMLRR-CLYNVT-TCSQA-AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 31 P~girVLIVDDDp-~ire~Lk~lL~~-~gy~V~-tasng-~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~ 106 (668)
...+||.||---. .-+..+..+... .++++. .|+.. +.+.+..+... ..-+..| --++++ .++
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-------~~~ll~----~~~ 82 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-------YEELLE----SGL 82 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-------HHHHHH----SSC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-------HHHHhc----CCC
Confidence 4568999998873 333344443333 356654 45433 33333333322 1112222 122322 345
Q ss_pred CcEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 005938 107 LPVIMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (668)
Q Consensus 107 IPVIILSa~--sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~V 149 (668)
+-+|+++.. .-.+.+.+|++.|..=|+-||+ +.++..++++.+
T Consensus 83 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 83 VDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 555555543 3357888999999999999997 778887777655
No 291
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.04 E-value=1.1e+02 Score=31.81 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=46.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~--~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
.+||.+|+.- .-.-.++++++++.. .+||++=-+-.+.+.+.++++.||+..++--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 5899999854 333468999998665 8999988888999999999999999988765
No 292
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=26.02 E-value=43 Score=25.47 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 6 ~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~ 38 (71)
T 1zug_A 6 ERLKKRRIALKMTQTELATKAGVK-QQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHHc
Confidence 455566777899999999999974 555555544
No 293
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.87 E-value=39 Score=28.15 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=25.9
Q ss_pred HHHHHHhcCC-------CCCHHHHHhhhcccchhHHHHHHHHHh
Q 005938 248 KRILELMNVP-------GLTRENVASHLQEINLQKFRLYLKRLN 284 (668)
Q Consensus 248 KkILeLL~v~-------gLti~EVAshVGy~D~qYFrk~FKK~~ 284 (668)
++||++++.. -.++.|||+++|++ ..--+++++.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS-~~TVrr~L~~Le 49 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLS-IYQVRLYLEQLH 49 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 4456655543 34699999999996 444888888883
No 294
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=25.63 E-value=3.5e+02 Score=27.77 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=59.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tas-ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
.+||.||.--..-...+...+...++++. .|+ +.+.+-+..+... .+ -+..| - +.+-..+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-~~-~~~~~-------~----~~ll~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-DA-RRIAT-------A----EEILEDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-SC-CEESC-------H----HHHHTCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-CC-cccCC-------H----HHHhcCCCCCEE
Confidence 48999998654333334444444577765 444 3334434433321 01 12222 1 222223456555
Q ss_pred EEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 005938 111 MMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (668)
Q Consensus 111 ILSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~V 149 (668)
+++... -.+.+.+|++.|..=|+-||+ +.++..++++.+
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 555433 466788999999999999996 677887777654
No 295
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.52 E-value=15 Score=32.50 Aligned_cols=22 Identities=0% Similarity=-0.138 Sum_probs=19.5
Q ss_pred chhhHHHhHHHHHHHHHhcccc
Q 005938 223 VVWSVELHQQFVSAVNQLGIDK 244 (668)
Q Consensus 223 vvwk~Elg~tFv~yLnqLRIeK 244 (668)
..|+.++|.+|.+|++++||++
T Consensus 112 r~Fk~~~G~tp~~y~~~~Rl~~ 133 (133)
T 1u8b_A 112 RLFKATTGMTPKAWQQAWRARR 133 (133)
T ss_dssp HHHHHHTSSCHHHHHHHHHHC-
T ss_pred HHHHHHHCcCHHHHHHHHHhcC
Confidence 3799999999999999999874
No 296
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=25.39 E-value=2.8e+02 Score=26.20 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHc------------C-CCceEEEEeCCCCCCC
Q 005938 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMD 93 (668)
Q Consensus 30 fP~girVLIVDDDp~ire~Lk~lL~~~gy~--V-~tasng~EALelLre~------------~-~~PDLVIlDI~MPdmD 93 (668)
+|.+.+|..||-++...+..++.+...++. + ....++.+.+..+... . ..+|+|++|...+.
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-- 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-- 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--
Confidence 344679999999999999999998876542 3 3566777666544321 1 34999999964332
Q ss_pred HHHHHHHH
Q 005938 94 GFKLLEHI 101 (668)
Q Consensus 94 G~ELLe~I 101 (668)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23445554
No 297
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=25.27 E-value=53 Score=31.70 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEEEe-ccC-CHHHHHHHHHcCCcEEEeCCCC
Q 005938 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIMMS-ADG-RVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 64 sng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir~~-~~IPVIILS-a~s-d~e~a~kAl~~GA~dYLlKPis 138 (668)
.+.+++++.++... ..+-++++.+|- ..|.++++.||+. ++.|+++.. -.+ -..++..+.++||+....-...
T Consensus 16 ~~~~~~~~~~~~~~--~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 16 TNLTDAVAVASNVA--SYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp SSHHHHHHHHHHHG--GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhc--CCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 34556666555432 122345555442 2467888888755 566665422 112 2345678889999866665444
Q ss_pred HH-HHHHHHHHH
Q 005938 139 EE-ELKNIWQHV 149 (668)
Q Consensus 139 ~e-EL~~iLq~V 149 (668)
.+ .+.++++.+
T Consensus 94 ~~~~~~~~~~~~ 105 (218)
T 3jr2_A 94 HIATIAACKKVA 105 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 33 355555443
No 298
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=25.23 E-value=50 Score=32.07 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-------CHHHHHHHHhccC-CCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdm-------DG~ELLe~Ir~~~-~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.++.+.......|.|+++-..|+. .+++.++++++.. ++||++.-+-+ .+.+.++++.||+.++.
T Consensus 126 ~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 126 VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVA 200 (228)
T ss_dssp GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 34555444410027999998777753 3466667776544 78876554443 46777888889998765
No 299
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=25.22 E-value=3.3e+02 Score=30.23 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCce-EEEEeCCC----CCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHH-cCCcEEEe------
Q 005938 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR-HGACDYLI------ 134 (668)
Q Consensus 67 ~EALelLre~~~~PD-LVIlDI~M----PdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~-~GA~dYLl------ 134 (668)
.+..+.+.+.. .+ |+++|+.- .+.| ++++++|++...+|||.--+-.+.+.+.++++ .|+++.+.
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d-~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYD-LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCC-HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCC-HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 34444444432 45 55556633 2333 78899998777899998777788899999998 79998764
Q ss_pred CCCCHHHHHHHH
Q 005938 135 KPIREEELKNIW 146 (668)
Q Consensus 135 KPis~eEL~~iL 146 (668)
.++...++++.+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 477777777654
No 300
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=25.19 E-value=88 Score=31.38 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC------HHHHHHHHhccCCCcEEEEecc-CCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMD------GFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmD------G~ELLe~Ir~~~~IPVIILSa~-sd~e~a~kAl~~GA~dYLl 134 (668)
.++++.+.+.. .|+|.+-+ .+ .+++++++|+ .++|||+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 301
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=24.96 E-value=62 Score=29.92 Aligned_cols=99 Identities=19% Similarity=0.131 Sum_probs=47.4
Q ss_pred CCCCCccccccccCCCCCCccEEEEEeCCH-HHHHHHHHHHHhCCC---------eEEEECCHH---HHHHHHHHcCC-C
Q 005938 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDI-TCLRILEQMLRRCLY---------NVTTCSQAA---VALDILRERKG-C 79 (668)
Q Consensus 14 s~~~~~~~~d~~~~e~fP~girVLIVDDDp-~ire~Lk~lL~~~gy---------~V~tasng~---EALelLre~~~-~ 79 (668)
+|.|++.-+..... ..+-+|++++-+. .....+..++...++ .+....+.. ..+..++.... .
T Consensus 29 ~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (220)
T 2cvh_A 29 YASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSN 105 (220)
T ss_dssp TTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTT
T ss_pred CCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcC
Confidence 46666553322211 3456888887654 112233334433332 222233332 24444443322 3
Q ss_pred ceEEEEeCCCCCCCH-----------HHHHHHHh---ccCCCcEEEEecc
Q 005938 80 FDVVLSDVHMPDMDG-----------FKLLEHIG---LEMDLPVIMMSAD 115 (668)
Q Consensus 80 PDLVIlDI~MPdmDG-----------~ELLe~Ir---~~~~IPVIILSa~ 115 (668)
|++||+|--....+. .++++.|+ ...+++||+++-.
T Consensus 106 ~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~ 155 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQV 155 (220)
T ss_dssp EEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECS
T ss_pred CCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeE
Confidence 999999974444332 23433343 3346777766643
No 302
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=24.60 E-value=2.7e+02 Score=24.15 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+|..||-++...+..+..+...+..+. ...+..+.+..+......+|+|++|.-.. .+--++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 499999999999998888876543443 45566665554443222499999994332 23334555553
No 303
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=24.55 E-value=24 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|.++|. +.++++++.+
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~gi-s~~~is~~e~ 43 (73)
T 3omt_A 11 NRLKSVLAEKGKTNLWLTETLDK-NKTTVSKWCT 43 (73)
T ss_dssp BCHHHHHHHHTCCHHHHHHHTTC-CHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHc
Confidence 45667777889999999999997 3455555543
No 304
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=24.52 E-value=3.4e+02 Score=28.55 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmD-G~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.++.+.+.. +|+|.+|..-.+.. -++.++++++..++|||+-. -.+.+.+.++.+.||+...+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 44444444443 89999887654332 24677777655578877622 35678899999999987765
No 305
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=24.52 E-value=40 Score=31.84 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHhcCCCC--CHHHHHhhhcccchhHHHHHHHHH
Q 005938 251 LELMNVPGL--TRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 251 LeLL~v~gL--ti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
.+++...|+ |..|+|.++|.+..+.+.++++++
T Consensus 16 ~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l 50 (202)
T 1jhf_A 16 RDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202)
T ss_dssp HHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHH
Confidence 344555678 999999999998677777777765
No 306
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=24.39 E-value=63 Score=26.53 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
++|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis-~~~is~~e 43 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVS-PQTFNTWC 43 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 445566777899999999999974 44454444
No 307
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=24.21 E-value=1.7e+02 Score=29.68 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=60.9
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHHcCCCceEEEEeCCCCCCC---------HHHHHH
Q 005938 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVT-TCS--QAAVALDILRERKGCFDVVLSDVHMPDMD---------GFKLLE 99 (668)
Q Consensus 33 girVLIV-DDDp~ire~Lk~lL~~~gy~V~-tas--ng~EALelLre~~~~PDLVIlDI~MPdmD---------G~ELLe 99 (668)
|...+|+ |=.......+...++..+..+. .+. +..+-++.+.+.. .+.|.+=. ..+.. -.++++
T Consensus 125 GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~--~gfiY~vs-~~GvTG~~~~~~~~~~~~v~ 201 (271)
T 3nav_A 125 GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG--KGYTYLLS-RAGVTGAETKANMPVHALLE 201 (271)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC--CSCEEECC-CC--------CCHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC--CCeEEEEe-ccCCCCcccCCchhHHHHHH
Confidence 4444444 4434445566677777776533 332 2234555555444 45454411 22212 246778
Q ss_pred HHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 005938 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (668)
Q Consensus 100 ~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKP 136 (668)
++|+..++||++=.+-.+.+.+.+++..||++.+.-.
T Consensus 202 ~vr~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 202 RLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 8887678999886677788888889999999999863
No 308
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=24.11 E-value=1.3e+02 Score=30.32 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 80 PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
.|++++-.. .+.-|..+++.+. ..+|||.... .. ..+.+..|-.+++..|-+.++|.+.+..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~-~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRV-GG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECC-TT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecC-CC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 477776543 2333566677664 4688775432 22 2234556778999999999999999988875
No 309
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=24.11 E-value=4.5e+02 Score=26.83 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EECCHHH-HHHHHHHcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005938 33 GLRVLVVDDDITCLRILEQML-RRCLYNVT-TCSQAAV-ALDILRERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL-~~~gy~V~-tasng~E-ALelLre~~~~PD-LVIlDI~MPdmDG~ELLe~Ir~~~~IP 108 (668)
.+||.||---..-...+..+. ...++++. .++...+ +-+..+... ++ -+..| --++++ .+++-
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~~-------~~~ll~----~~~~D 89 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYND-------YHDLIN----DKDVE 89 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEESS-------HHHHHH----CTTCC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeCC-------HHHHhc----CCCCC
Confidence 479999998877776666666 33467765 4443333 333333322 11 12222 222322 23455
Q ss_pred EEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 005938 109 VIMMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (668)
Q Consensus 109 VIILSa~--sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlr 151 (668)
+|++... .-.+.+.+|++.|..=|+-||+ +.++..++++.+.+
T Consensus 90 ~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 136 (357)
T 3ec7_A 90 VVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQK 136 (357)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHH
Confidence 5554443 3466788999999998999996 67888877776543
No 310
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=24.06 E-value=95 Score=33.93 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=32.3
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~---ire~Lk~lL~~~gy~V~tas---ng----~EALelLre~~~~PDLVIlDI 87 (668)
.+.+|++|+-|+. ..+.|+.+-...+..+.... +. .++++.++... +|+||+|.
T Consensus 127 ~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~--~DvVIIDT 190 (443)
T 3dm5_A 127 RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKG--VDIIIVDT 190 (443)
T ss_dssp TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTT--CSEEEEEC
T ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCC--CCEEEEEC
Confidence 4788999987753 33344444444455554332 22 35555555544 89999996
No 311
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=23.96 E-value=3.8e+02 Score=24.85 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=48.0
Q ss_pred EECCHHHHHHHHHHc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-C-CCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 005938 62 TCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (668)
Q Consensus 62 tasng~EALelLre~-~~~PDLVIlDI~MPdmDG~ELLe~Ir~~-~-~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis 138 (668)
...+.+++.++++.. ....|+|-+.+..| ++.+.++.+|+. + +. +|-+..-.+.+.+..+++.||+.. .-|..
T Consensus 17 ~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~ 92 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHL 92 (205)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSC
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCC
Confidence 445666665555432 12378776666654 567778888754 3 33 343433456778899999999755 66765
Q ss_pred HHHHHH
Q 005938 139 EEELKN 144 (668)
Q Consensus 139 ~eEL~~ 144 (668)
..++.+
T Consensus 93 ~~~~~~ 98 (205)
T 1wa3_A 93 DEEISQ 98 (205)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 544443
No 312
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.93 E-value=2.7e+02 Score=26.77 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=42.1
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 33 girVLIVD------DDp~ire~Lk~lL~~~gy~V~ta----sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+-||++|+ |.......+.+.|+..|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46888886 44457777888888888887766 366666666654 466665 6666666666554
No 313
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.57 E-value=92 Score=26.09 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc--hhHHHHHHHHHhCCCC
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRLNGVSQ 288 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D--~qYFrk~FKK~~GvT~ 288 (668)
+.|+.|+ ..|++..|||..+|.+- .++.....++..++..
T Consensus 33 ~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 33 RTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5567776 89999999999999953 2333333344444443
No 314
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=23.50 E-value=5.7e+02 Score=25.63 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=59.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
.+||.||---..-...+..+....++++. .++...+..+.+.+. +.+-..+ |- +.+-...++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~----~~~l~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------SP----DEVFARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------SH----HHHTTCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------CH----HHHhcCCCCCEEE
Confidence 47899998866665555555444466665 444333443433332 2211111 11 2222224455555
Q ss_pred EeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHH
Q 005938 112 MSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (668)
Q Consensus 112 LSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~V 149 (668)
++... -.+.+.+|++.|..=++-||+ +.++..++++.+
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 54433 356788999999999999995 567777666554
No 315
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=23.39 E-value=5.7e+02 Score=25.83 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=62.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~-~gy~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
..+||.||---..-...+..+... .++++. .++...+..+.+.+. +.+-..+ |--++++ .+++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~~------~~~~ll~----~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGHA------SLTDMLA----QTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEES------CHHHHHH----HCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCceeC------CHHHHhc----CCCCCE
Confidence 568999998776656666555554 467755 444333333333322 2222211 2223333 245555
Q ss_pred EEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 005938 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (668)
Q Consensus 110 IILSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlr 151 (668)
|+++... -.+.+.+|++.|..=++-||+ +.++..++++.+.+
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 5555443 356788999999988999996 67777777665533
No 316
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=23.38 E-value=97 Score=33.65 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc---CCHHHHHHHHHcCCcEE-EeCCCCH
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIRE 139 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~---sd~e~a~kAl~~GA~dY-LlKPis~ 139 (668)
+..++++.+...-..++|+.+.==++..| ++-.++|+....+||+ ... .+...+.++++.|++++ ++|+-..
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qi 349 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQI 349 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHH
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhc
Confidence 45777766443212378888876666555 5666677655667764 333 24678889999998876 5677533
No 317
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=23.26 E-value=1.4e+02 Score=29.38 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CCcEEEEeccCCHHH
Q 005938 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (668)
Q Consensus 52 lL~~~gy~V~tasng---~EALelLre~~~~PDLVIlDI~MPdmDG-------~ELLe~Ir~~~-~IPVIILSa~sd~e~ 120 (668)
.+++.|..+..+-+. .+.++.+... ..+|+|++=.--|+.+| ++-++++|+.. +++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 666777777655443 3444444331 03798877555565544 55566666433 444 55677777889
Q ss_pred HHHHHHcCCcEEEeC
Q 005938 121 VMRGIRHGACDYLIK 135 (668)
Q Consensus 121 a~kAl~~GA~dYLlK 135 (668)
+.++.+.||+-++.=
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999987653
No 318
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=23.24 E-value=1.4e+02 Score=30.33 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlK 135 (668)
.++++++++..++||++=.+-.+.+.+.+. .||+..+.=
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 478888987778999988888888888885 999998874
No 319
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.18 E-value=1e+02 Score=23.63 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN 272 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D 272 (668)
+.|+.++ ..|++..|||+.+|.+-
T Consensus 17 ~~il~~~-~~g~s~~eIA~~l~is~ 40 (74)
T 1fse_A 17 REVFELL-VQDKTTKEIASELFISE 40 (74)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCCCH
Confidence 4566665 78999999999999853
No 320
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=23.15 E-value=1.6e+02 Score=30.50 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=44.6
Q ss_pred eEEEE-eCCCCCCCHH-HHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 81 DVVLS-DVHMPDMDGF-KLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 81 DLVIl-DI~MPdmDG~-ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
|.|++ |=|.--..|+ +.++++|+ .+..+|.+ ..++.+.+.+|++.||+-..+..+++++++++++.+
T Consensus 170 d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 170 DAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSEEECTTTC----CHHHHHHHHHHHCTTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 55554 4333322233 35555553 35677766 345668899999999999999999999999888754
No 321
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.12 E-value=76 Score=25.75 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 16 ~~l~~~r~~~glsq~~lA~~~gis-~~~is~~e~ 48 (91)
T 1x57_A 16 KVIQQGRQSKGLTQKDLATKINEK-PQVIADYES 48 (91)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 344556667899999999999974 455555544
No 322
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=23.07 E-value=2.9e+02 Score=24.92 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=43.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEeCCCCC--CCHHHHHHHHh
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy-~V-~tasng~EALelLre~~~~PDLVIlDI~MPd--mDG~ELLe~Ir 102 (668)
-+|.-||-++...+..++.+...+. .+ ....+..+.+..+. ...+|+|++|.-... .+-.++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALG 138 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHH
Confidence 4799999999999999988876553 34 35667666544322 234999999853332 12344555553
No 323
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=23.01 E-value=52 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=21.5
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
+|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 14 ~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e 44 (77)
T 2b5a_A 14 TLKKIRTQKGVSQEELADLAGLH-RTYISEVE 44 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHH
Confidence 34445556789999999999974 45555544
No 324
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.91 E-value=1e+02 Score=25.05 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN 272 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D 272 (668)
+.|+.|+ ..|++..|||..+|.+-
T Consensus 27 ~~vl~l~-~~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 27 RDILKLI-AQGLPNKMIARRLDITE 50 (82)
T ss_dssp HHHHHHH-TTTCCHHHHHHHHTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCH
Confidence 4566665 78999999999999853
No 325
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=22.89 E-value=2.8e+02 Score=29.07 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEeccCC
Q 005938 47 RILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLE--MDLPVIMMSADGR 117 (668)
Q Consensus 47 e~Lk~lL~~~gy~V~--tasng~EALelLre~~~~PDLVIlDI~MP-----dmDG~ELLe~Ir~~--~~IPVIILSa~sd 117 (668)
+.++++-+..+..|. .+.+.++|..+.+.. .|.|.+.-+-. ...-++++.+++.. .++|||.-.+-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~G---ad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQHG---AAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHTT---CSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHcC---CCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555454443 466777776665532 79888743211 12346677777543 3799999888889
Q ss_pred HHHHHHHHHcCCcEEEe
Q 005938 118 VSAVMRGIRHGACDYLI 134 (668)
Q Consensus 118 ~e~a~kAl~~GA~dYLl 134 (668)
.+.+.+++..||+...+
T Consensus 292 ~~D~~k~l~~GAdaV~i 308 (370)
T 1gox_A 292 GTDVFKALALGAAGVFI 308 (370)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEee
Confidence 99999999999998755
No 326
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=22.79 E-value=5.9e+02 Score=25.56 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=57.5
Q ss_pred cEEEEEeCCHHHHHHHHHHH-HhCCCeEE-EECCHHHHHHHHHHcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005938 34 LRVLVVDDDITCLRILEQML-RRCLYNVT-TCSQAAVALDILRERKGCFD-VVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL-~~~gy~V~-tasng~EALelLre~~~~PD-LVIlDI~MPdmDG~ELLe~Ir~~~~IPVI 110 (668)
+||.||---..-...+..+. ...++++. .++...+..+.+.+.- .++ -+..| --++++ .+++-+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-g~~~~~~~~-------~~~ll~----~~~~D~V 70 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-QLNATVYPN-------DDSLLA----DENVDAV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-TCCCEEESS-------HHHHHH----CTTCCEE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-CCCCeeeCC-------HHHHhc----CCCCCEE
Confidence 67888877665555555555 22356654 3443333333333221 111 12222 122222 2344455
Q ss_pred EEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 005938 111 MMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (668)
Q Consensus 111 ILSa~--sd~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vl 150 (668)
++... .-.+.+.+|++.|..=++-||+ +.++..++++.+-
T Consensus 71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~ 114 (344)
T 3mz0_A 71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEI 114 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 54443 3366788899999888999996 6778877776553
No 327
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.73 E-value=41 Score=25.24 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
++|.+++..-|+|..++|..+|.+ .++++++.+
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 40 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVS-NVAISQWER 40 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHHc
Confidence 455566667799999999999974 455555543
No 328
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.61 E-value=3.2e+02 Score=25.93 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeEEEECCH---H---HHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc
Q 005938 44 TCLRILEQMLRRCLYNVTTCSQA---A---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (668)
Q Consensus 44 ~ire~Lk~lL~~~gy~V~tasng---~---EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~ 115 (668)
.+...+++.+.+.+|.+..+... . +.++.+.... +|-||+--..+ -+.++.++. ..+|+|++-..
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~~-~~iPvV~i~~~ 94 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEILH-QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHHT-TSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHHH-CCCCEEEEecc
Confidence 34556666677779988765432 2 3455555444 88777754322 556666643 58999887544
No 329
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=22.60 E-value=54 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
+|.+++..-|+|..++|..+|.+ .++++++.
T Consensus 17 ~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e 47 (74)
T 1y7y_A 17 RLRELRTAKGLSQETLAFLSGLD-RSYVGGVE 47 (74)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH
Confidence 34455566799999999999974 44444443
No 330
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=22.45 E-value=52 Score=26.09 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYL 280 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~F 280 (668)
+|.+++...|+|..++|.++|. +.++++++.
T Consensus 15 ~lk~~R~~~glsq~~lA~~~gi-s~~~i~~~e 45 (82)
T 3s8q_A 15 VIKKIRLEKGMTQEDLAYKSNL-DRTYISGIE 45 (82)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCc-CHHHHHHHH
Confidence 3445555679999999999997 344444443
No 331
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=22.26 E-value=1.6e+02 Score=29.11 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCce---EEEEeCCC-CCCC-HHHHHHHHhccCCCcE--EEEeccCCHHHHHHHHHcCCcEEEeCCC
Q 005938 65 QAAVALDILRERKGCFD---VVLSDVHM-PDMD-GFKLLEHIGLEMDLPV--IMMSADGRVSAVMRGIRHGACDYLIKPI 137 (668)
Q Consensus 65 ng~EALelLre~~~~PD---LVIlDI~M-PdmD-G~ELLe~Ir~~~~IPV--IILSa~sd~e~a~kAl~~GA~dYLlKPi 137 (668)
+-.++++.+ +.. .| +=++|-+. |... |.++++.||...+.|+ -+++.. -..++..+.+.||+....-..
T Consensus 14 ~l~~~i~~~-~~g--ad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~E 89 (231)
T 3ctl_A 14 KFKEQIEFI-DSH--ADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR-PQDYIAQLARAGADFITLHPE 89 (231)
T ss_dssp GHHHHHHHH-HTT--CSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHH-HcC--CCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEECcc
Confidence 445677777 332 34 33455442 4333 8999999987555654 345543 344688899999987766543
Q ss_pred C-HHHHHHHHHHH
Q 005938 138 R-EEELKNIWQHV 149 (668)
Q Consensus 138 s-~eEL~~iLq~V 149 (668)
. ...+.++++.+
T Consensus 90 a~~~~~~~~i~~i 102 (231)
T 3ctl_A 90 TINGQAFRLIDEI 102 (231)
T ss_dssp GCTTTHHHHHHHH
T ss_pred cCCccHHHHHHHH
Confidence 3 23355555443
No 332
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.25 E-value=38 Score=25.26 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=23.2
Q ss_pred HHHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 249 RILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 249 kILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
+|.+++...|+|..++|..+|.+ .++++++.+
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e~ 36 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVS-RQTINGIEK 36 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSC-HHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc
Confidence 35566777899999999999974 455555543
No 333
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=22.21 E-value=3.7e+02 Score=28.48 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=59.5
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCce--EE-EEeCCCCCCCHHHHHHHHhccCC
Q 005938 32 AGLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFD--VV-LSDVHMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 32 ~girVLIVDDDp~ir-e~Lk~lL~~~gy~V~-tasng~EALelLre~~~~PD--LV-IlDI~MPdmDG~ELLe~Ir~~~~ 106 (668)
..+||.||---..-+ ..+..+....++++. .++...+..+.+.+....+. +. ..|+ +.+-..++
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~-----------~~ll~~~~ 150 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF-----------DKIAKDPK 150 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG-----------GGGGGCTT
T ss_pred CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCH-----------HHHhcCCC
Confidence 348999999876665 344443333356654 45433333333333211111 11 1111 12222345
Q ss_pred CcEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 005938 107 LPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (668)
Q Consensus 107 IPVIILSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vl 150 (668)
+-+|+++... -.+.+.+|++.|..=|+-||+ +.++..++++.+-
T Consensus 151 vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 198 (433)
T 1h6d_A 151 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 198 (433)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 5566655443 367788999999988999997 6777776666543
No 334
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.13 E-value=87 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccchh
Q 005938 248 KRILELMNVPGLTRENVASHLQEINLQ 274 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D~q 274 (668)
+.|+.+.-..|++..|||..+|.+...
T Consensus 21 r~il~l~~~~g~s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGT 47 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 456666557899999999999996443
No 335
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.03 E-value=1.8e+02 Score=28.19 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=35.6
Q ss_pred HHHHHHHHHcC--CCceEEEEeCC-----CCCCCHHHHHHHHhccCCCcEEEEeccCCHHHHHH
Q 005938 67 AVALDILRERK--GCFDVVLSDVH-----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (668)
Q Consensus 67 ~EALelLre~~--~~PDLVIlDI~-----MPdmDG~ELLe~Ir~~~~IPVIILSa~sd~e~a~k 123 (668)
..+++.+++.- ..+||||+|=- +.-.+--++++.|...+.-.-||+|+..-.....+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 34555555432 45999999953 23345556777776555555567788776655544
No 336
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=22.00 E-value=3e+02 Score=22.25 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=47.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005938 33 GLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (668)
Q Consensus 33 girVLIVDDDp~ire~Lk~lL~~~g-y~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVII 111 (668)
+++|+|+-- -.+-..+...|...+ +.|..+....+.++.+... ....+..|+.- --++.+.++ ..-+|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~~----~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKD----EAGLAKALG---GFDAVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTTC----HHHHHHHTT---TCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCCC----HHHHHHHHc---CCCEEE
Confidence 478999988 555555555666667 8887666555555555432 25666666542 222222222 344555
Q ss_pred EeccC--CHHHHHHHHHcCCcE
Q 005938 112 MSADG--RVSAVMRGIRHGACD 131 (668)
Q Consensus 112 LSa~s--d~e~a~kAl~~GA~d 131 (668)
.+... ....+..+.+.|+.-
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ 96 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHY 96 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEE
T ss_pred ECCCchhhHHHHHHHHHhCCCE
Confidence 44422 223344555666543
No 337
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=21.91 E-value=1.6e+02 Score=31.65 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCe---E-EEECCHHHHHHHHHHcCCCceEEEEeCCC
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC------LYN---V-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~------gy~---V-~tasng~EALelLre~~~~PDLVIlDI~M 89 (668)
-+|-+||=|+.+.+.-++.+... ... + ....++.+.++...+....||+||+|+--
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 47999999999999888886431 111 3 35788888887665444469999999754
No 338
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=21.89 E-value=83 Score=27.67 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHhcccccchHHHHHHhcCCCCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 229 LHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 229 lg~tFv~yLnqLRIeKA~PKkILeLL~v~gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
|...|-..+..+++.... -+|-.+.-+.|+|..|||..+|.+. ..-.+.+++-
T Consensus 6 T~~eFe~~~~~l~~~~~~-~~~A~lyYv~g~tQ~eIA~~lGiSR-~~VsrlL~~A 58 (101)
T 2w7n_A 6 TESQFQEAIQGLEVGQQT-IEIARGVLVDGKPQATFATSLGLTR-GAVSQAVHRV 58 (101)
T ss_dssp CHHHHHHHHTTCCCCHHH-HHHHHHHHTTCCCHHHHHHHHTCCH-HHHHHHHHHH
T ss_pred CHHHHHHHHccCChHHHH-HHHHHHHHHcCCCHHHHHHHHCCCH-HHHHHHHHHH
Confidence 556777888777877643 4566777899999999999999654 4445554443
No 339
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=21.74 E-value=2.6e+02 Score=25.91 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=43.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005938 35 RVLVVDDDITCLRILEQMLRRCLY-NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (668)
Q Consensus 35 rVLIVDDDp~ire~Lk~lL~~~gy-~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir 102 (668)
+|..||-++...+..++.+...+. .+. ...+..+.+.. ....+|+|++|.-....+.-++++.+.
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 899999999999999998887664 443 44565554321 223599999985422334455666664
No 340
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=21.69 E-value=66 Score=30.51 Aligned_cols=101 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHH-------HHHHHHhcc
Q 005938 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF-------KLLEHIGLE 104 (668)
Q Consensus 33 girVLIVDDDp-~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~-------ELLe~Ir~~ 104 (668)
|...+.+..+. .....+.+.+...+..+..+-+.....+.++......|.|+++...|+.+|. +.++++++.
T Consensus 84 gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~ 163 (220)
T 2fli_A 84 GADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKW 163 (220)
T ss_dssp TCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH
T ss_pred CCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHH
Q ss_pred C-----CCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 105 M-----DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 105 ~-----~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
. ++||++.-+-. .+.+.++++.||+..+.
T Consensus 164 ~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 164 RDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp HHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred HHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
No 341
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.68 E-value=1.9e+02 Score=31.84 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.5
Q ss_pred ceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 80 FDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 80 PDLVIlDI~MPdmD-G~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
+|+|.+|...+... -+++++++++. +++|||+ ..-.+.+.+..++++||+....
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 89999999877543 45788888754 5788876 3345678899999999988775
No 342
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=21.63 E-value=2.7e+02 Score=29.67 Aligned_cols=76 Identities=13% Similarity=0.025 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHH-HHHHcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy~---V~-tasng~EALe-lLre~~~~PDLVIlDI~MPdmDG~ELLe~I-r~~~~I 107 (668)
-+|..||-++...+.+++-++..+.. +. ...|+.+.+. .+ ...||+|++|- ++.. .++++.+ +....-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHhCCC
Confidence 57999999999999999999887652 43 4556666554 22 23499999997 3321 2455443 211222
Q ss_pred cEEEEecc
Q 005938 108 PVIMMSAD 115 (668)
Q Consensus 108 PVIILSa~ 115 (668)
.++++|..
T Consensus 152 Gll~~t~t 159 (392)
T 3axs_A 152 GILSLTAT 159 (392)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 36666663
No 343
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=21.56 E-value=4.7e+02 Score=26.68 Aligned_cols=69 Identities=9% Similarity=-0.024 Sum_probs=45.8
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEE
Q 005938 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (668)
Q Consensus 60 V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYL 133 (668)
...+.+.+++.+.++.. .|+|.+|-.-|+ +-.+..+.++. .+.+ .|..|+--+.+.+.+-.+.|++.+.
T Consensus 198 ~Vev~t~eea~eal~aG---aD~I~LDn~~~~-~~~~~v~~l~~~~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 198 EVEVDSLEQLDAVLPEK---PELILLDNFAVW-QTQTAVQRRDSRAPTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEESSHHHHHHHGGGC---CSEEEEETCCHH-HHHHHHHHHHHHCTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEECCCCHH-HHHHHHHHhhccCCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 44788889998888743 799999984331 22233444432 2233 5667777778888888899987654
No 344
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=21.54 E-value=2.3e+02 Score=30.91 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCCCH-HHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdmDG-~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+..+.+.+.. +|+|.+|........ +++++.+++. +++|||+-.. ...+.+.++.+.||+...+
T Consensus 257 ~~~a~~~~~aG--~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 257 KYRLDLLTQAG--VDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 44444444433 899999887654433 5788888755 4788876333 5677899999999987755
No 345
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.48 E-value=51 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHhcC-C---CCCHHHHHhhhcccchhHHHHHHHHH
Q 005938 248 KRILELMNV-P---GLTRENVASHLQEINLQKFRLYLKRL 283 (668)
Q Consensus 248 KkILeLL~v-~---gLti~EVAshVGy~D~qYFrk~FKK~ 283 (668)
.+||++|.. + .+|..+||..||-+. .-..+.++++
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr-~tV~~~L~~L 51 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPK-KEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCH-HHHHHHHHHH
Confidence 346655543 3 589999999999754 4566667776
No 346
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=21.45 E-value=2.1e+02 Score=25.54 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI 87 (668)
++.+|.++..... ..+|...+..+..+.+..++++++.... .|.++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4678888776652 3345556788889999999999998765 99999984
No 347
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.45 E-value=2.3e+02 Score=28.49 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCce-EEEEeCCCCCCCH-----------HHHHHHHhccCCCcEEE-EeccCCHHH----HHHHHHcCCc
Q 005938 68 VALDILRERKGCFD-VVLSDVHMPDMDG-----------FKLLEHIGLEMDLPVIM-MSADGRVSA----VMRGIRHGAC 130 (668)
Q Consensus 68 EALelLre~~~~PD-LVIlDI~MPdmDG-----------~ELLe~Ir~~~~IPVII-LSa~sd~e~----a~kAl~~GA~ 130 (668)
++.+.+.+.. +| .|-+.+.-|...| .++++.+++..++||++ ++..-+.+. +..+.++|++
T Consensus 110 ~~a~~~~~~g--~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d 187 (311)
T 1jub_A 110 AMLKKIQESD--FSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLT 187 (311)
T ss_dssp HHHHHHHHSC--CCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhcC--CCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 4444554433 78 8888775454321 56677777666789887 444333322 4566677887
Q ss_pred EEEe
Q 005938 131 DYLI 134 (668)
Q Consensus 131 dYLl 134 (668)
...+
T Consensus 188 ~i~v 191 (311)
T 1jub_A 188 YVNS 191 (311)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 348
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=21.44 E-value=4e+02 Score=23.13 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=48.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy-~V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPV 109 (668)
.+.+|..+|-++...+..++.+...+. .+. ...+..+. +... .+|+|+++.- .+-.++++.++..+.-.+
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~--~~D~i~~~~~---~~~~~~l~~~~~~~gG~l 127 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDKL--EFNKAFIGGT---KNIEKIIEILDKKKINHI 127 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGGC--CCSEEEECSC---SCHHHHHHHHHHTTCCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccCC--CCcEEEECCc---ccHHHHHHHHhhCCCCEE
Confidence 457899999999999999988877653 333 45666552 2332 4999999864 555667777754333334
Q ss_pred EE
Q 005938 110 IM 111 (668)
Q Consensus 110 II 111 (668)
++
T Consensus 128 ~~ 129 (183)
T 2yxd_A 128 VA 129 (183)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 349
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=21.33 E-value=2.8e+02 Score=29.14 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHH
Q 005938 34 LRVLVVDDDITCLRILEQMLRRC---------------LYN-VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK 96 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~---------------gy~-V~-tasng~EALelLre~~~~PDLVIlDI~MPdmDG~E 96 (668)
.+|..+|-++...+.+++-++.. +.. +. ...++.+.+... ...||+|++|- |+ ...+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~~-~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--FG-SPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--SS-CCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--CC-CHHH
Confidence 57999999999999999988765 543 43 566777665432 23499999884 33 3345
Q ss_pred HHHHH-hccCCCcEEEEecc
Q 005938 97 LLEHI-GLEMDLPVIMMSAD 115 (668)
Q Consensus 97 LLe~I-r~~~~IPVIILSa~ 115 (668)
+++.. +....-.++.+|..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55543 22222236666653
No 350
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.31 E-value=61 Score=35.11 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHHcCCCceEEEEeC
Q 005938 31 PAGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQ---A----AVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 31 P~girVLIVDDDp---~ire~Lk~lL~~~gy~V~tasn---g----~EALelLre~~~~PDLVIlDI 87 (668)
+.+.+|+++|-|. ...+.+...-...++.+..... . .++++.++.. .+|+||+|.
T Consensus 124 ~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~--~~DvVIIDT 188 (425)
T 2ffh_A 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDT 188 (425)
T ss_dssp TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 3578999999884 3333344433344666655432 2 2344444333 389999996
No 351
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=21.14 E-value=27 Score=34.46 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=44.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc--CCCceEEEEeC-CCCCCCHHHHHHHHhccCC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER--KGCFDVVLSDV-HMPDMDGFKLLEHIGLEMD 106 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy--~V~tasng~EALelLre~--~~~PDLVIlDI-~MPdmDG~ELLe~Ir~~~~ 106 (668)
.+++|+++-.....+ ....++++.+. ....+....+.++.+++. ...+|+|++|= +.-..+-+++++.|.. ..
T Consensus 39 ~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~g 116 (223)
T 2b8t_A 39 ADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE-NG 116 (223)
T ss_dssp TTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-TT
T ss_pred cCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-CC
Confidence 467888884222222 22233333332 223456667777777652 12489999994 3222345667777654 36
Q ss_pred CcEEEEe
Q 005938 107 LPVIMMS 113 (668)
Q Consensus 107 IPVIILS 113 (668)
++||+.-
T Consensus 117 i~Vil~G 123 (223)
T 2b8t_A 117 FVVIISG 123 (223)
T ss_dssp CEEEEEC
T ss_pred CeEEEEe
Confidence 7766543
No 352
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.09 E-value=1.2e+02 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN 272 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D 272 (668)
+.|+.++ ..|++..|||..+|.+.
T Consensus 22 ~~vl~l~-~~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 22 RQVLSAV-VAGLPNKSIAYDLDISP 45 (79)
T ss_dssp HHHHHHH-TTTCCHHHHHHHTTSCH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCH
Confidence 4567775 89999999999999854
No 353
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=20.94 E-value=2.7e+02 Score=27.25 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=39.1
Q ss_pred EEEEE-eCCHH---HHHHHHHHHHhCCCeEE---EE----CCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005938 35 RVLVV-DDDIT---CLRILEQMLRRCLYNVT---TC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (668)
Q Consensus 35 rVLIV-DDDp~---ire~Lk~lL~~~gy~V~---ta----sng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~ 103 (668)
||.+| +|+.. ..+.+++.+++.+..+. .+ .+....+..++... ||.|++.. .+.+...+++.+++
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAAN--PDAILVGA--SGTAAALPQTTLRE 212 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHC--CSEEEEEC--CHHHHHHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHHH
Confidence 45544 33332 33445555666665542 11 23345555555444 77777643 12334455555542
Q ss_pred -cCCCcEEEEeccCCHH
Q 005938 104 -EMDLPVIMMSADGRVS 119 (668)
Q Consensus 104 -~~~IPVIILSa~sd~e 119 (668)
...+|+|...+.++.+
T Consensus 213 ~g~~~p~i~~~g~~~~~ 229 (362)
T 3snr_A 213 RGYNGLIYQTHGAASMD 229 (362)
T ss_dssp TTCCSEEEECGGGCSHH
T ss_pred cCCCccEEeccCcCcHH
Confidence 2455665444444443
No 354
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.81 E-value=2.2e+02 Score=29.71 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=40.4
Q ss_pred HHHHHHhc-cCCCcEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 005938 96 KLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (668)
Q Consensus 96 ELLe~Ir~-~~~IPVIILSa~sd~e~a~kAl~~GA~dYLlKPis~eEL~~iLq~V 149 (668)
+.++++|+ .+..+|.+-. ++.+.+.+|++.||+-.++.-+++++++++++.+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv--~tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIEC--DNISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEE--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 34455553 3567777644 4578899999999999999999999999988764
No 355
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=20.75 E-value=62 Score=30.85 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCCHHHHHhhhcccc--hhHHHHHHHHH
Q 005938 248 KRILELMNVPGLTRENVASHLQEIN--LQKFRLYLKRL 283 (668)
Q Consensus 248 KkILeLL~v~gLti~EVAshVGy~D--~qYFrk~FKK~ 283 (668)
++|||+|..+..++++||..+|-+. .+|.-..+-|.
T Consensus 14 ~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE 51 (165)
T 2vxz_A 14 RDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKE 51 (165)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHHHHHhc
Confidence 5799999999999999999999864 44555556554
No 356
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=20.69 E-value=5e+02 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCcEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHH
Q 005938 105 MDLPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (668)
Q Consensus 105 ~~IPVIILSa~s--d~e~a~kAl~~GA~dYLlKPi--s~eEL~~iLq~Vlr 151 (668)
+++-+|+++... -.+.+.+|++.|..=|+-||+ +.++..++++.+-+
T Consensus 63 ~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 63 VQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHH
Confidence 344445444433 356788999999999999996 57787777765533
No 357
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=20.63 E-value=21 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=13.3
Q ss_pred CChhHHHHHHHhhcCCCCCCce-ecccchhhh
Q 005938 323 IPPQTLAALHAELLGRPTGNLV-TAVDQPALL 353 (668)
Q Consensus 323 ~~~~~~~~~~~~~~g~~~~~~~-~~~d~~~~~ 353 (668)
+|......+...++...+|-+- ..++.|+-|
T Consensus 46 LPke~~k~iPk~y~~~~~gt~rLLtE~EWR~L 77 (150)
T 1qb3_A 46 LPKAMLKVIPSDYFNSEVGTLRILTEDEWRGL 77 (150)
T ss_dssp CCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHT
T ss_pred cCHHHHhhccccccccccccccCCCHHHHHHH
Confidence 4455444444444443444221 334445444
No 358
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=20.60 E-value=2.2e+02 Score=25.95 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=38.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 32 ~girVLIVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI 87 (668)
.+.+|.++.... ....+...+...+..+..+.+..++++++...+ .|.++.|.
T Consensus 110 ~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR--LDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS--CSEEEEEH
T ss_pred CCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC--CCEEEeCc
Confidence 356777766554 334455555444678888999999999998766 99999984
No 359
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=20.45 E-value=4.2e+02 Score=27.95 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+.++.+.+.. +|+|.+|..-... .-++.++++++. ++++||+-+ -.+.+.+.++.+.||+....
T Consensus 110 ~~~~~~lieaG--vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhCC--CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 44555555544 8999998743222 235667777654 577776533 34677889999999987776
No 360
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.33 E-value=6.1e+02 Score=24.81 Aligned_cols=123 Identities=11% Similarity=0.176 Sum_probs=63.7
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE-CCHHHHHHHHHHc-C-CCceEEEEe----------CCCC-
Q 005938 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTC-SQAAVALDILRER-K-GCFDVVLSD----------VHMP- 90 (668)
Q Consensus 27 ~e~fP~girVLIVDDDp~ire~Lk~lL~~~g--y~V~ta-sng~EALelLre~-~-~~PDLVIlD----------I~MP- 90 (668)
++......+|+++-..+.+.+..+.++.... ..+..+ .+.++++..+++. . ..+|+||+= +..|
T Consensus 6 ~~~~~~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPV 85 (225)
T 2pju_A 6 PPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPV 85 (225)
T ss_dssp -------CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCE
T ss_pred CCccccCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCE
Confidence 3433444578888888888888888887644 345443 4678888877653 2 238888842 1233
Q ss_pred ---CCCHHHHHHHHhcc--CCCcEEEEeccCCHHH---HHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 005938 91 ---DMDGFKLLEHIGLE--MDLPVIMMSADGRVSA---VMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (668)
Q Consensus 91 ---dmDG~ELLe~Ir~~--~~IPVIILSa~sd~e~---a~kAl~~GA~dYLlKPis~eEL~~iLq~Vlr 151 (668)
..+|+++++.|... ..-+|-+++-..-... ..+.+..... ..-..+.+++...++.+.+
T Consensus 86 V~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~--~~~~~~~ee~~~~i~~l~~ 152 (225)
T 2pju_A 86 ILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLD--QRSYITEEDARGQINELKA 152 (225)
T ss_dssp EEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEE--EEEESSHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceE--EEEeCCHHHHHHHHHHHHH
Confidence 35677777777422 2223433333222222 2233332222 2223356677777766544
No 361
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=20.31 E-value=2.3e+02 Score=28.61 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHhccCCCcEEEEeccCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHH
Q 005938 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (668)
Q Consensus 95 ~ELLe~Ir~~~~IPVIILSa~sd~e~a~kAl~~GA~dYLl--KPis~eEL~~iLq~V 149 (668)
++.++.++...++||+.---.-+...+.+|..+||+..++ .-++.+++...++.+
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a 158 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRT 158 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHH
Confidence 7788888877789998654344555588999999999987 455667776666554
No 362
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=20.29 E-value=2.5e+02 Score=29.25 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHHcCCCceEEEEeC
Q 005938 34 LRVLVVDDDITCLRILEQMLRRCLY---NVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (668)
Q Consensus 34 irVLIVDDDp~ire~Lk~lL~~~gy---~V~-tasng~EALelLre~~~~PDLVIlDI 87 (668)
-+|.-||-++...+..++-+...+. .+. .+.+..+.+..+......||+||+|-
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999988887665 443 56788777665543233599999994
No 363
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=20.24 E-value=2.5e+02 Score=30.73 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCCcEEEEeccCCHHHHHHHHHcCCcEEEe
Q 005938 67 AVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (668)
Q Consensus 67 ~EALelLre~~~~PDLVIlDI~MPdm-DG~ELLe~Ir~~-~~IPVIILSa~sd~e~a~kAl~~GA~dYLl 134 (668)
.+..+.+.+.. +|+|.+|...+.. .-+++++++++. +++|||+- .-.+.+.+..+.++||+...+
T Consensus 231 ~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 34444444433 8999999887654 345788888754 47887763 345678899999999988775
No 364
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.23 E-value=47 Score=26.34 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHHHhcCCCCCHHHHHhhhcccchhHHHHHHH
Q 005938 250 ILELMNVPGLTRENVASHLQEINLQKFRLYLK 281 (668)
Q Consensus 250 ILeLL~v~gLti~EVAshVGy~D~qYFrk~FK 281 (668)
|.+++...|+|..++|.++|. +.++++++.+
T Consensus 19 l~~~R~~~gltq~elA~~~gi-s~~~is~~e~ 49 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLGR-PQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHTS-CHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHC
Confidence 334445578999999999997 4455555543
No 365
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=20.17 E-value=47 Score=31.91 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.5
Q ss_pred chHHHHHHhcCCCCCHHHHHhhhccc
Q 005938 246 VPKRILELMNVPGLTRENVASHLQEI 271 (668)
Q Consensus 246 ~PKkILeLL~v~gLti~EVAshVGy~ 271 (668)
.|++|.+|+...|||..++|+++|.+
T Consensus 91 s~~~lk~lR~~~glTQ~elA~~LGvs 116 (170)
T 2auw_A 91 SHEMFGDWMHRNNLSLTTAAEALGIS 116 (170)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTSC
T ss_pred CcHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 36889999999999999999999984
No 366
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=20.10 E-value=1.2e+02 Score=32.96 Aligned_cols=77 Identities=12% Similarity=0.198 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecc---CCHHHHHHHHHcCCcEE-EeCCCCHH
Q 005938 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIREE 140 (668)
Q Consensus 65 ng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILSa~---sd~e~a~kAl~~GA~dY-LlKPis~e 140 (668)
+..++++.+.+.-..++|+.+.==++..| ++-.++|+....+||+ ... .+...+.++++.|++++ ++|+-..-
T Consensus 271 t~~e~~~~~~~ll~~y~i~~IEdPl~~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiG 347 (439)
T 2akz_A 271 TGDQLGALYQDFVRDYPVVSIEDPFDQDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIG 347 (439)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCcEEECCCCccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcC
Confidence 45676666543212378888876666555 5556666655567764 333 25688899999998776 56775433
Q ss_pred HHHH
Q 005938 141 ELKN 144 (668)
Q Consensus 141 EL~~ 144 (668)
-|.+
T Consensus 348 Gite 351 (439)
T 2akz_A 348 SVTE 351 (439)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 3333
No 367
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=20.02 E-value=3.5e+02 Score=24.30 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=47.3
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 005938 38 VVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (668)
Q Consensus 38 IVDDDp~ire~Lk~lL~~~gy~V~tasng~EALelLre~~~~PDLVIlDI~MPdmDG~ELLe~Ir~~~~IPVIILS 113 (668)
++|.+..+...|..+|....-.=....-..+++..++..+ ..|||+--+-...+-...+..+....++|++++.
T Consensus 1 ~~~~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gk--a~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQ--ALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVP 74 (126)
T ss_dssp --CCTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTC--CSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEES
T ss_pred CCcccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCC--ceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4677888888899998764211112334567888888766 7888886555333444555666566789998654
Done!