Query 005939
Match_columns 668
No_of_seqs 468 out of 2419
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 5.6E-47 1.2E-51 424.4 23.4 547 97-659 286-874 (1100)
2 cd04372 RhoGAP_chimaerin RhoGA 100.0 5.7E-41 1.2E-45 334.0 20.2 189 166-372 1-194 (194)
3 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 7.9E-41 1.7E-45 335.3 20.5 198 163-376 2-203 (203)
4 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 4.7E-41 1E-45 334.1 18.6 192 165-376 1-192 (192)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 2.2E-40 4.7E-45 331.1 19.4 191 164-372 1-199 (199)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 3.3E-40 7.1E-45 333.8 20.3 200 165-376 1-209 (216)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 5.4E-40 1.2E-44 324.8 20.0 185 166-367 1-186 (186)
8 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 5.8E-40 1.3E-44 332.4 19.8 210 163-376 2-218 (220)
9 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 4.7E-40 1E-44 324.2 17.3 176 166-374 1-181 (182)
10 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 9.5E-40 2.1E-44 325.3 18.2 190 164-367 1-195 (195)
11 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.5E-39 3.3E-44 328.2 18.8 192 166-376 1-211 (213)
12 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 1.7E-39 3.7E-44 321.8 18.6 184 164-367 1-188 (188)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 2.8E-39 6.1E-44 320.0 18.8 183 166-367 1-187 (187)
14 KOG1451 Oligophrenin-1 and rel 100.0 1.2E-37 2.7E-42 335.4 32.3 303 14-376 260-571 (812)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 5.1E-39 1.1E-43 320.5 20.0 190 165-372 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 4.4E-39 9.6E-44 320.6 19.5 190 162-372 2-195 (195)
17 cd04406 RhoGAP_myosin_IXA RhoG 100.0 5.3E-39 1.1E-43 317.7 18.4 184 166-366 1-185 (186)
18 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 6.3E-39 1.4E-43 320.7 18.9 186 166-367 1-200 (200)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.2E-38 2.7E-43 319.0 19.8 195 165-376 1-199 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.1E-38 4.7E-43 318.0 19.6 187 177-376 6-204 (206)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.1E-38 4.5E-43 322.4 18.7 188 165-372 1-225 (225)
22 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.4E-38 5.1E-43 314.6 18.0 185 166-372 1-192 (192)
23 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 3.8E-38 8.1E-43 311.5 19.2 161 166-327 1-163 (185)
24 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.1E-38 4.6E-43 314.6 17.4 177 165-374 1-189 (190)
25 cd04377 RhoGAP_myosin_IX RhoGA 100.0 4.2E-38 9.2E-43 311.4 19.2 185 166-367 1-186 (186)
26 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.2E-38 6.9E-43 316.4 18.4 187 166-367 1-203 (203)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 4.4E-38 9.6E-43 317.0 19.2 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2E-37 4.3E-42 308.7 19.9 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2E-37 4.4E-42 307.3 19.1 184 164-367 1-189 (189)
30 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 3.1E-37 6.8E-42 310.0 19.1 186 166-376 1-200 (208)
31 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 5.5E-37 1.2E-41 307.7 20.3 195 166-368 1-206 (207)
32 KOG4407 Predicted Rho GTPase-a 100.0 5.9E-38 1.3E-42 357.5 10.6 339 18-376 922-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.8E-36 3.9E-41 299.3 18.9 180 167-368 2-184 (184)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 4.4E-36 9.4E-41 298.4 19.5 178 177-371 14-192 (193)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 3.6E-36 7.9E-41 303.1 18.0 189 166-374 1-210 (212)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 3.9E-36 8.4E-41 297.5 17.6 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 7.3E-36 1.6E-40 298.8 17.9 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 2.9E-35 6.2E-40 292.5 18.1 177 170-368 5-184 (200)
39 KOG1117 Rho- and Arf-GTPase ac 100.0 5.2E-33 1.1E-37 309.3 18.0 323 17-376 490-900 (1186)
40 KOG1450 Predicted Rho GTPase-a 100.0 1.7E-32 3.7E-37 305.5 18.9 321 34-373 270-649 (650)
41 smart00324 RhoGAP GTPase-activ 100.0 5.2E-32 1.1E-36 264.2 18.3 170 179-367 2-173 (174)
42 KOG2200 Tumour suppressor prot 100.0 3.1E-31 6.8E-36 287.7 15.0 209 163-376 298-514 (674)
43 KOG4270 GTPase-activator prote 100.0 2E-29 4.3E-34 280.6 28.2 203 159-377 140-348 (577)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.2E-30 2.7E-35 264.7 15.6 158 163-327 10-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 7.2E-30 1.6E-34 246.5 18.9 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 1.3E-30 2.8E-35 291.8 12.6 185 160-377 894-1088(1112)
47 PF00620 RhoGAP: RhoGAP domain 100.0 3.4E-29 7.4E-34 238.2 10.2 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 100.0 1.5E-28 3.3E-33 258.7 15.0 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.2E-27 2.6E-32 257.2 15.8 204 162-376 63-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 3.2E-27 6.9E-32 259.3 7.9 241 159-422 76-316 (741)
51 KOG1453 Chimaerin and related 99.9 1.9E-24 4.2E-29 257.4 13.6 162 165-327 602-771 (918)
52 KOG3564 GTPase-activating prot 99.9 1.6E-23 3.4E-28 222.9 16.2 182 178-376 360-546 (604)
53 KOG4271 Rho-GTPase activating 99.8 7.2E-19 1.6E-23 199.2 8.4 161 162-323 914-1076(1100)
54 KOG1452 Predicted Rho GTPase-a 99.7 5.3E-18 1.2E-22 173.3 11.5 164 163-327 182-353 (442)
55 cd01233 Unc104 Unc-104 pleckst 99.7 1.3E-16 2.8E-21 142.5 11.8 92 19-124 2-98 (100)
56 cd04405 RhoGAP_BRCC3-like RhoG 99.7 2.7E-16 5.9E-21 157.6 12.7 185 164-376 20-232 (235)
57 cd01251 PH_centaurin_alpha Cen 99.7 3.7E-16 8.1E-21 140.3 10.5 90 21-125 1-101 (103)
58 cd01264 PH_melted Melted pleck 99.6 6.6E-16 1.4E-20 137.6 10.0 91 21-124 2-101 (101)
59 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 1.3E-15 2.7E-20 134.9 10.8 90 22-123 2-93 (95)
60 cd01260 PH_CNK Connector enhan 99.6 2.1E-15 4.6E-20 133.2 11.4 92 21-123 2-96 (96)
61 cd01238 PH_Tec Tec pleckstrin 99.6 2.5E-15 5.5E-20 135.7 10.1 94 20-123 1-106 (106)
62 cd01252 PH_cytohesin Cytohesin 99.6 7.7E-15 1.7E-19 136.2 12.1 99 20-129 1-118 (125)
63 cd01235 PH_SETbf Set binding f 99.6 7.4E-15 1.6E-19 130.5 10.6 90 21-124 1-101 (101)
64 cd01247 PH_GPBP Goodpasture an 99.6 1E-14 2.3E-19 128.1 10.8 89 22-122 2-90 (91)
65 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 1.2E-14 2.6E-19 144.3 11.6 144 182-327 8-166 (198)
66 cd01236 PH_outspread Outspread 99.5 1.9E-14 4.2E-19 129.2 9.5 89 21-122 1-102 (104)
67 cd01257 PH_IRS Insulin recepto 99.5 2.6E-14 5.6E-19 127.8 10.1 92 18-122 1-100 (101)
68 cd01241 PH_Akt Akt pleckstrin 99.5 4.8E-14 1E-18 126.4 10.9 97 19-123 1-101 (102)
69 cd01266 PH_Gab Gab (Grb2-assoc 99.5 1.5E-13 3.3E-18 124.4 10.1 88 22-123 2-107 (108)
70 cd01246 PH_oxysterol_bp Oxyste 99.5 1.9E-13 4.1E-18 118.4 10.4 91 21-123 1-91 (91)
71 cd01250 PH_centaurin Centaurin 99.5 2.4E-13 5.3E-18 118.4 9.6 90 21-122 1-93 (94)
72 cd01263 PH_anillin Anillin Ple 99.4 5.7E-13 1.2E-17 122.8 9.3 98 20-123 2-122 (122)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 1.1E-12 2.4E-17 116.7 9.6 76 34-123 18-98 (98)
74 cd01245 PH_RasGAP_CG5898 RAS G 99.4 1.2E-12 2.6E-17 116.3 8.8 88 22-122 2-97 (98)
75 PF00169 PH: PH domain; Inter 99.4 5.4E-12 1.2E-16 110.1 12.8 96 19-124 1-103 (104)
76 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 8.3E-12 1.8E-16 114.5 11.0 103 21-125 2-112 (117)
77 cd01253 PH_beta_spectrin Beta- 99.3 1.2E-11 2.5E-16 111.0 9.3 94 22-122 2-103 (104)
78 KOG4370 Ral-GTPase effector RL 99.3 8.7E-12 1.9E-16 132.4 8.2 186 163-381 49-280 (514)
79 PF15413 PH_11: Pleckstrin hom 99.2 2.4E-11 5.2E-16 110.9 9.3 97 21-123 1-112 (112)
80 KOG0930 Guanine nucleotide exc 99.2 1.9E-11 4.2E-16 123.8 9.3 102 20-130 261-381 (395)
81 KOG3565 Cdc42-interacting prot 99.2 3.5E-11 7.7E-16 138.1 7.9 146 179-326 217-366 (640)
82 cd01237 Unc112 Unc-112 pleckst 99.1 2.1E-10 4.6E-15 102.5 9.7 91 29-124 12-103 (106)
83 PF15409 PH_8: Pleckstrin homo 99.1 3.8E-10 8.2E-15 98.2 10.3 86 23-123 1-88 (89)
84 cd01254 PH_PLD Phospholipase D 99.1 2.7E-10 5.9E-15 105.3 10.1 76 36-123 32-121 (121)
85 PF14389 Lzipper-MIP1: Leucine 99.1 5.4E-11 1.2E-15 103.7 4.3 54 614-667 1-55 (88)
86 cd01219 PH_FGD FGD (faciogenit 99.1 5.7E-10 1.2E-14 99.9 11.1 98 19-125 2-100 (101)
87 PF15410 PH_9: Pleckstrin homo 99.1 2.8E-10 6E-15 105.0 8.2 103 20-124 1-118 (119)
88 smart00233 PH Pleckstrin homol 99.0 2.5E-09 5.3E-14 91.6 11.7 97 19-124 1-101 (102)
89 cd01256 PH_dynamin Dynamin ple 98.9 1.1E-08 2.4E-13 89.2 8.9 99 19-123 1-104 (110)
90 cd00821 PH Pleckstrin homology 98.8 1.7E-08 3.6E-13 85.6 8.9 93 21-122 1-95 (96)
91 KOG0690 Serine/threonine prote 98.8 4.6E-09 1E-13 109.7 5.9 108 14-127 10-119 (516)
92 cd00900 PH-like Pleckstrin hom 98.8 5E-08 1.1E-12 83.3 10.6 93 22-123 2-99 (99)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 2E-08 4.3E-13 88.4 4.6 97 20-127 3-113 (117)
94 cd01249 PH_oligophrenin Oligop 98.7 1.3E-07 2.8E-12 84.5 9.6 97 21-121 1-102 (104)
95 KOG4724 Predicted Rho GTPase-a 98.7 1.8E-08 3.9E-13 112.7 5.0 168 159-326 410-589 (741)
96 KOG1090 Predicted dual-specifi 98.7 8.5E-09 1.8E-13 118.4 2.4 96 15-124 1630-1731(1732)
97 cd01220 PH_CDEP Chondrocyte-de 98.6 3.8E-07 8.2E-12 81.5 11.4 95 19-125 2-98 (99)
98 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 2.1E-07 4.5E-12 83.6 7.2 95 21-124 2-108 (114)
99 cd01243 PH_MRCK MRCK (myotonic 98.5 1.5E-06 3.3E-11 79.1 11.3 104 20-123 3-118 (122)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 5.4E-06 1.2E-10 74.5 11.0 103 21-125 2-111 (112)
101 KOG3640 Actin binding protein 98.3 7.3E-07 1.6E-11 103.2 6.5 104 16-125 987-1107(1116)
102 PF14593 PH_3: PH domain; PDB: 98.3 5.2E-06 1.1E-10 74.7 10.5 92 15-126 9-101 (104)
103 PF08101 DUF1708: Domain of un 98.3 5.7E-06 1.2E-10 91.3 12.1 145 181-327 9-168 (420)
104 KOG2059 Ras GTPase-activating 98.1 6.9E-06 1.5E-10 93.1 8.0 116 15-145 561-684 (800)
105 KOG0932 Guanine nucleotide exc 97.9 3.5E-06 7.5E-11 93.1 1.5 107 11-125 498-618 (774)
106 KOG3751 Growth factor receptor 97.8 3.2E-05 7E-10 85.2 7.1 103 16-124 314-424 (622)
107 cd01218 PH_phafin2 Phafin2 Pl 97.8 0.00024 5.1E-09 64.1 10.5 96 17-126 2-100 (104)
108 PLN00188 enhanced disease resi 97.8 0.00012 2.6E-09 84.6 10.6 104 17-127 2-112 (719)
109 cd01261 PH_SOS Son of Sevenles 97.6 0.00043 9.4E-09 63.2 9.6 106 17-126 2-111 (112)
110 cd01258 PH_syntrophin Syntroph 97.6 0.00021 4.5E-09 64.7 7.4 100 22-122 2-107 (108)
111 cd01239 PH_PKD Protein kinase 97.6 0.00025 5.4E-09 64.3 7.4 90 20-123 1-117 (117)
112 PTZ00267 NIMA-related protein 97.5 0.0002 4.3E-09 81.1 7.7 101 16-125 374-477 (478)
113 KOG0521 Putative GTPase activa 97.2 0.00018 4E-09 85.4 2.8 100 17-127 272-371 (785)
114 cd01262 PH_PDK1 3-Phosphoinosi 97.0 0.0052 1.1E-07 53.6 9.1 87 19-124 1-88 (89)
115 KOG0248 Cytoplasmic protein Ma 97.0 0.00044 9.6E-09 78.4 3.2 96 17-125 247-342 (936)
116 KOG3723 PH domain protein Melt 97.0 0.00038 8.3E-09 77.5 2.5 94 20-127 736-839 (851)
117 KOG3543 Ca2+-dependent activat 96.5 0.00053 1.1E-08 76.9 -0.6 101 17-127 462-568 (1218)
118 PLN02866 phospholipase D 96.5 0.018 3.8E-07 69.7 11.5 82 35-128 216-311 (1068)
119 KOG1453 Chimaerin and related 96.4 0.0017 3.7E-08 79.1 2.6 161 165-326 462-668 (918)
120 KOG3531 Rho guanine nucleotide 96.3 0.0013 2.9E-08 76.2 1.2 83 34-124 937-1019(1036)
121 cd01222 PH_clg Clg (common-sit 96.3 0.044 9.6E-07 48.9 10.6 92 19-124 4-95 (97)
122 cd01240 PH_beta-ARK Beta adren 96.3 0.0051 1.1E-07 55.3 4.4 95 18-126 2-100 (116)
123 PTZ00283 serine/threonine prot 96.3 0.012 2.7E-07 67.1 8.6 37 87-125 454-490 (496)
124 KOG1739 Serine/threonine prote 96.3 0.0062 1.3E-07 67.1 5.6 97 16-125 21-117 (611)
125 PF12814 Mcp5_PH: Meiotic cell 96.2 0.059 1.3E-06 50.1 11.4 95 24-125 14-122 (123)
126 PF15408 PH_7: Pleckstrin homo 96.2 0.0015 3.1E-08 56.1 0.5 87 22-122 1-95 (104)
127 cd01221 PH_ephexin Ephexin Ple 95.0 0.26 5.6E-06 46.0 10.5 97 19-121 3-119 (125)
128 PF15406 PH_6: Pleckstrin homo 95.0 0.057 1.2E-06 48.7 5.8 70 39-121 41-110 (112)
129 KOG1449 Predicted Rho GTPase-a 94.3 0.0088 1.9E-07 67.3 -1.1 175 164-376 208-390 (670)
130 cd01224 PH_Collybistin Collybi 94.1 0.81 1.8E-05 41.7 11.2 95 19-122 2-105 (109)
131 cd01228 PH_BCR-related BCR (br 94.0 0.23 5E-06 43.9 7.4 89 19-124 3-94 (96)
132 KOG1449 Predicted Rho GTPase-a 93.8 0.014 3E-07 65.8 -0.7 72 294-376 1-74 (670)
133 KOG1117 Rho- and Arf-GTPase ac 93.8 0.03 6.5E-07 65.5 1.8 96 15-125 83-178 (1186)
134 PF15404 PH_4: Pleckstrin homo 93.5 0.56 1.2E-05 46.7 10.0 35 21-57 1-35 (185)
135 cd01232 PH_TRIO Trio pleckstri 93.5 1.6 3.5E-05 40.1 12.3 89 36-125 23-113 (114)
136 KOG4424 Predicted Rho/Rac guan 93.5 0.093 2E-06 59.5 4.9 105 13-126 266-371 (623)
137 cd01231 PH_Lnk LNK-family Plec 92.4 0.46 1E-05 42.4 6.8 81 33-122 17-106 (107)
138 KOG3549 Syntrophins (type gamm 92.3 0.26 5.6E-06 52.7 6.0 106 14-125 276-387 (505)
139 cd01226 PH_exo84 Exocyst compl 92.2 1 2.2E-05 40.5 8.8 34 87-124 65-98 (100)
140 KOG1737 Oxysterol-binding prot 91.8 0.12 2.6E-06 61.4 3.1 89 21-123 79-167 (799)
141 cd01227 PH_Dbs Dbs (DBL's big 89.6 3.2 6.9E-05 39.3 9.9 87 38-125 30-116 (133)
142 KOG0248 Cytoplasmic protein Ma 89.1 0.15 3.3E-06 58.6 0.9 89 20-124 260-348 (936)
143 cd01223 PH_Vav Vav pleckstrin 88.9 2.1 4.6E-05 39.5 8.0 86 37-125 20-112 (116)
144 cd01225 PH_Cool_Pix Cool (clon 87.0 3.6 7.8E-05 37.6 8.1 82 37-124 28-109 (111)
145 KOG3551 Syntrophins (type beta 86.4 0.52 1.1E-05 51.2 2.8 106 18-127 291-404 (506)
146 PF15405 PH_5: Pleckstrin homo 86.1 2 4.3E-05 40.7 6.3 36 88-123 99-134 (135)
147 KOG1738 Membrane-associated gu 84.6 0.18 3.9E-06 57.9 -1.7 55 20-78 563-618 (638)
148 KOG4047 Docking protein 1 (p62 83.5 0.54 1.2E-05 52.4 1.5 103 17-124 6-117 (429)
149 KOG2391 Vacuolar sorting prote 82.1 3.7 8E-05 44.2 6.9 51 587-637 212-269 (365)
150 PF07820 TraC: TraC-like prote 81.8 2.2 4.7E-05 37.6 4.2 31 623-653 4-41 (92)
151 KOG0517 Beta-spectrin [Cytoske 79.9 0.036 7.7E-07 69.3 -10.0 105 15-125 2295-2410(2473)
152 PF15411 PH_10: Pleckstrin hom 78.2 25 0.00055 32.4 10.3 86 35-120 19-116 (116)
153 KOG0804 Cytoplasmic Zn-finger 77.7 7.4 0.00016 43.4 7.6 73 585-658 347-419 (493)
154 cd01248 PH_PLC Phospholipase C 74.8 20 0.00043 32.5 8.7 34 89-122 80-114 (115)
155 PF09726 Macoilin: Transmembra 73.6 2.1E+02 0.0046 34.5 24.6 46 603-648 467-522 (697)
156 PF10186 Atg14: UV radiation r 73.5 11 0.00023 39.7 7.5 47 581-627 62-108 (302)
157 KOG4236 Serine/threonine prote 70.1 3.4 7.3E-05 47.2 2.8 96 14-124 408-523 (888)
158 KOG3727 Mitogen inducible gene 67.4 0.86 1.9E-05 51.7 -2.4 83 34-124 372-458 (664)
159 KOG4424 Predicted Rho/Rac guan 66.0 8.4 0.00018 44.3 4.9 84 34-125 510-596 (623)
160 KOG1264 Phospholipase C [Lipid 64.7 9.1 0.0002 45.6 4.9 55 73-127 856-913 (1267)
161 PF06698 DUF1192: Protein of u 64.7 18 0.00038 29.5 5.2 32 618-649 25-56 (59)
162 KOG4807 F-actin binding protei 62.7 0.1 2.2E-06 56.3 -10.2 83 34-125 32-115 (593)
163 cd01255 PH_TIAM TIAM Pleckstri 62.2 46 0.001 31.9 8.2 87 38-126 50-156 (160)
164 PRK13848 conjugal transfer pro 59.2 14 0.0003 32.6 4.0 27 625-651 7-39 (98)
165 KOG0705 GTPase-activating prot 58.8 7.3 0.00016 44.8 2.8 35 89-125 446-480 (749)
166 PRK10884 SH3 domain-containing 57.8 55 0.0012 33.3 8.7 59 584-646 95-157 (206)
167 PF08826 DMPK_coil: DMPK coile 57.3 45 0.00097 27.3 6.4 46 590-639 12-57 (61)
168 KOG0577 Serine/threonine prote 55.3 47 0.001 39.0 8.4 68 242-326 218-285 (948)
169 KOG3520 Predicted guanine nucl 55.3 19 0.00041 44.9 5.6 46 85-130 682-727 (1167)
170 PRK13729 conjugal transfer pil 53.1 52 0.0011 37.5 8.2 59 572-637 56-120 (475)
171 KOG3523 Putative guanine nucle 48.9 39 0.00084 39.4 6.4 82 34-121 496-591 (695)
172 PF00038 Filament: Intermediat 48.1 83 0.0018 33.5 8.7 59 582-640 75-136 (312)
173 PF09726 Macoilin: Transmembra 47.1 67 0.0015 38.6 8.5 73 579-651 422-511 (697)
174 PF05565 Sipho_Gp157: Siphovir 46.7 1.1E+02 0.0024 29.8 8.5 63 578-640 22-87 (162)
175 KOG2129 Uncharacterized conser 46.3 87 0.0019 35.0 8.3 67 584-650 210-314 (552)
176 COG1579 Zn-ribbon protein, pos 45.8 1.1E+02 0.0023 32.0 8.6 70 582-651 10-82 (239)
177 PF06005 DUF904: Protein of un 45.6 97 0.0021 26.2 6.9 55 593-647 8-66 (72)
178 PRK11637 AmiB activator; Provi 45.2 1.6E+02 0.0034 33.2 10.7 32 608-639 220-251 (428)
179 COG1579 Zn-ribbon protein, pos 43.5 1.2E+02 0.0026 31.6 8.6 35 605-639 87-121 (239)
180 KOG2077 JNK/SAPK-associated pr 43.1 62 0.0014 37.4 6.9 52 586-637 319-373 (832)
181 PF04714 BCL_N: BCL7, N-termin 42.8 11 0.00025 29.4 0.8 21 34-54 27-47 (52)
182 COG5509 Uncharacterized small 41.4 54 0.0012 26.7 4.3 32 619-650 30-61 (65)
183 KOG3433 Protein involved in me 40.6 1.1E+02 0.0024 30.5 7.3 56 583-638 75-133 (203)
184 KOG4270 GTPase-activator prote 39.7 23 0.0005 41.3 3.0 154 156-323 30-194 (577)
185 PF00038 Filament: Intermediat 39.5 1.3E+02 0.0028 32.0 8.6 68 584-651 49-126 (312)
186 PF10506 MCC-bdg_PDZ: PDZ doma 39.4 96 0.0021 25.9 5.8 27 593-619 2-28 (67)
187 PF03962 Mnd1: Mnd1 family; I 39.2 1E+02 0.0022 30.9 7.1 53 581-638 75-127 (188)
188 KOG1060 Vesicle coat complex A 38.9 8.3E+02 0.018 30.0 18.4 133 164-300 321-478 (968)
189 KOG3915 Transcription regulato 37.9 1.4E+02 0.0029 33.9 8.3 23 622-644 549-572 (641)
190 PRK11637 AmiB activator; Provi 37.9 1.6E+02 0.0035 33.1 9.4 8 654-661 303-310 (428)
191 PF12325 TMF_TATA_bd: TATA ele 37.8 1E+02 0.0023 28.6 6.5 28 583-610 38-65 (120)
192 KOG4095 Uncharacterized conser 37.0 13 0.00029 35.5 0.4 26 34-59 28-53 (165)
193 COG4942 Membrane-bound metallo 36.4 1.7E+02 0.0038 32.9 9.0 55 594-648 201-258 (420)
194 cd00089 HR1 Protein kinase C-r 35.7 45 0.00098 27.8 3.4 32 622-653 3-34 (72)
195 PF12709 Kinetocho_Slk19: Cent 35.4 90 0.002 27.4 5.2 33 610-642 45-77 (87)
196 PF14197 Cep57_CLD_2: Centroso 35.3 1.9E+02 0.0042 24.2 7.0 54 585-638 1-64 (69)
197 PF06705 SF-assemblin: SF-asse 35.2 2.3E+02 0.005 29.3 9.4 46 606-651 106-151 (247)
198 PF10186 Atg14: UV radiation r 35.0 2.2E+02 0.0047 29.7 9.3 23 581-603 26-48 (302)
199 TIGR03752 conj_TIGR03752 integ 34.5 1.8E+02 0.0039 33.3 8.7 61 583-647 64-135 (472)
200 PF12240 Angiomotin_C: Angiomo 34.2 61 0.0013 32.8 4.6 31 606-636 13-43 (205)
201 PF09304 Cortex-I_coil: Cortex 33.3 2.8E+02 0.0062 25.3 8.2 15 585-599 5-19 (107)
202 PF11083 Streptin-Immun: Lanti 33.2 1.7E+02 0.0037 26.3 6.6 60 584-643 1-74 (99)
203 PF12210 Hrs_helical: Hepatocy 33.1 1.4E+02 0.0029 26.8 6.0 39 607-649 43-81 (96)
204 cd04769 HTH_MerR2 Helix-Turn-H 32.8 1E+02 0.0022 28.0 5.6 42 610-651 75-116 (116)
205 PF11559 ADIP: Afadin- and alp 32.5 1.5E+02 0.0033 28.2 6.9 16 584-599 68-83 (151)
206 PF11180 DUF2968: Protein of u 31.5 2.4E+02 0.0051 28.5 8.1 37 579-615 102-138 (192)
207 PF03938 OmpH: Outer membrane 31.4 1.7E+02 0.0037 27.7 7.2 31 612-642 78-108 (158)
208 COG3750 Uncharacterized protei 31.4 92 0.002 26.8 4.5 40 583-622 22-68 (85)
209 PF08458 PH_2: Plant pleckstri 31.0 3.5E+02 0.0075 24.9 8.5 38 87-127 69-106 (110)
210 PRK09343 prefoldin subunit bet 30.6 1.4E+02 0.0031 27.6 6.2 42 609-650 73-115 (121)
211 KOG3647 Predicted coiled-coil 30.4 2E+02 0.0044 30.4 7.7 39 586-628 120-158 (338)
212 TIGR03752 conj_TIGR03752 integ 30.2 1.5E+02 0.0033 33.8 7.3 29 610-638 105-133 (472)
213 TIGR02231 conserved hypothetic 30.1 1.9E+02 0.0041 33.5 8.5 36 612-647 136-171 (525)
214 KOG4140 Nuclear protein Ataxin 30.0 3E+02 0.0065 31.6 9.3 40 599-647 274-314 (659)
215 PF02050 FliJ: Flagellar FliJ 29.7 3.5E+02 0.0076 23.5 8.6 68 581-648 18-93 (123)
216 PRK10361 DNA recombination pro 29.7 2E+02 0.0042 33.1 8.2 52 586-637 64-115 (475)
217 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.4 2.5E+02 0.0054 26.2 7.7 45 592-636 69-113 (132)
218 TIGR01000 bacteriocin_acc bact 29.3 2.3E+02 0.005 32.1 8.9 44 609-652 160-203 (457)
219 KOG4466 Component of histone d 28.3 92 0.002 33.0 4.9 37 588-627 100-136 (291)
220 PF08549 SWI-SNF_Ssr4: Fungal 27.9 88 0.0019 37.1 5.1 58 584-648 354-412 (669)
221 PRK00409 recombination and DNA 26.9 1.9E+02 0.0042 35.3 8.1 46 579-624 517-565 (782)
222 TIGR02338 gimC_beta prefoldin, 26.9 1.7E+02 0.0036 26.5 5.9 40 608-647 68-108 (110)
223 KOG4673 Transcription factor T 26.9 2E+02 0.0043 34.4 7.5 54 593-647 541-596 (961)
224 PF15463 ECM11: Extracellular 26.8 2E+02 0.0044 27.2 6.7 63 567-636 67-134 (139)
225 PF10234 Cluap1: Clusterin-ass 26.7 2.5E+02 0.0054 29.9 7.8 58 582-639 169-236 (267)
226 KOG4370 Ral-GTPase effector RL 26.4 1.3E+02 0.0029 33.7 5.9 34 229-262 118-151 (514)
227 PF12711 Kinesin-relat_1: Kine 26.1 2.4E+02 0.0051 24.8 6.3 40 597-637 45-86 (86)
228 cd07666 BAR_SNX7 The Bin/Amphi 25.8 2.4E+02 0.0051 29.5 7.5 9 639-647 211-219 (243)
229 PF04282 DUF438: Family of unk 25.7 2.6E+02 0.0056 23.7 6.3 56 237-292 1-56 (71)
230 PF13747 DUF4164: Domain of un 25.4 3.6E+02 0.0077 23.7 7.4 56 580-636 6-61 (89)
231 KOG0241 Kinesin-like protein [ 25.2 1.5E+02 0.0032 36.7 6.3 26 538-564 511-536 (1714)
232 KOG2070 Guanine nucleotide exc 24.8 1.9E+02 0.0041 33.2 6.8 80 37-122 325-404 (661)
233 PF10828 DUF2570: Protein of u 24.7 3.4E+02 0.0074 24.6 7.5 37 584-620 27-63 (110)
234 PRK06798 fliD flagellar cappin 24.7 1.7E+02 0.0037 33.2 6.7 47 584-637 381-427 (440)
235 PTZ00464 SNF-7-like protein; P 24.3 7.4E+02 0.016 25.3 10.5 61 579-639 15-86 (211)
236 cd00584 Prefoldin_alpha Prefol 24.2 1.2E+02 0.0027 27.9 4.6 30 610-639 90-119 (129)
237 PRK11239 hypothetical protein; 23.3 99 0.0021 31.6 3.9 23 617-639 186-208 (215)
238 TIGR00293 prefoldin, archaeal 22.9 1.4E+02 0.0029 27.5 4.6 30 610-639 89-118 (126)
239 PRK10947 global DNA-binding tr 22.8 1.6E+02 0.0035 27.9 5.1 49 581-629 20-68 (135)
240 PF05700 BCAS2: Breast carcino 22.8 5E+02 0.011 26.5 9.2 61 581-642 142-210 (221)
241 TIGR01069 mutS2 MutS2 family p 22.7 3.2E+02 0.007 33.4 8.9 65 581-645 514-581 (771)
242 PF05508 Ran-binding: RanGTP-b 22.4 4.1E+02 0.009 28.7 8.5 50 585-635 45-105 (302)
243 PF03471 CorC_HlyC: Transporte 22.3 88 0.0019 26.4 3.0 45 198-247 4-48 (81)
244 KOG0993 Rab5 GTPase effector R 22.2 2E+02 0.0044 32.1 6.2 39 614-652 420-465 (542)
245 PF02841 GBP_C: Guanylate-bind 22.0 2.8E+02 0.0062 29.5 7.5 31 608-638 230-260 (297)
246 KOG0804 Cytoplasmic Zn-finger 22.0 3E+02 0.0065 31.3 7.6 67 579-648 372-452 (493)
247 PRK03947 prefoldin subunit alp 21.6 1.5E+02 0.0032 27.9 4.6 29 611-639 98-126 (140)
248 PRK11091 aerobic respiration c 21.5 4.3E+02 0.0094 31.8 9.8 47 605-651 112-161 (779)
249 COG5374 Uncharacterized conser 21.2 2.3E+02 0.0049 28.3 5.8 51 584-642 138-188 (192)
250 PRK00409 recombination and DNA 21.1 3.1E+02 0.0068 33.6 8.3 17 108-124 38-54 (782)
251 KOG3915 Transcription regulato 20.8 2.8E+02 0.006 31.6 7.0 18 632-649 546-563 (641)
252 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.6 4.1E+02 0.0089 24.8 7.4 53 584-636 68-120 (132)
253 PF12128 DUF3584: Protein of u 20.6 3.2E+02 0.007 35.1 8.7 41 607-647 841-881 (1201)
254 PRK13694 hypothetical protein; 20.6 1.3E+02 0.0027 26.3 3.4 40 583-622 20-66 (83)
255 PF08112 ATP-synt_E_2: ATP syn 20.5 2.2E+02 0.0047 22.7 4.4 32 584-621 17-48 (56)
256 PF05615 THOC7: Tho complex su 20.5 6.2E+02 0.013 23.6 8.7 67 577-646 41-113 (139)
257 cd00890 Prefoldin Prefoldin is 20.5 1.6E+02 0.0035 26.7 4.6 30 610-639 90-119 (129)
258 KOG1955 Ral-GTPase effector RA 20.4 1.6E+02 0.0035 33.7 5.1 49 586-634 681-732 (737)
259 cd01106 HTH_TipAL-Mta Helix-Tu 20.2 1.7E+02 0.0037 25.9 4.5 26 613-638 72-97 (103)
260 KOG1832 HIV-1 Vpr-binding prot 20.0 1.3E+02 0.0027 37.1 4.4 11 35-45 1079-1089(1516)
261 PF12240 Angiomotin_C: Angiomo 20.0 5.9E+02 0.013 26.0 8.5 64 582-645 17-95 (205)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-47 Score=424.36 Aligned_cols=547 Identities=32% Similarity=0.377 Sum_probs=437.8
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHhhCCcc-hhhccccccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~-a~~~g~~g~f~~~~~~~~e~~-~~~~k~~~~~~~~vFG~pL~~ll 174 (668)
..+.+.|.-.+++.+++.+|-.+++.+..+||.+ +.+++|+|+|+.+...+..+. .-.+++..++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4557888999999999999999999999999999 788999999999998876653 56778888999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHhcCCCcCC---eeecCC-CHHHHHHHHHHHh-cCCccCC--CCCCcc--hhhhhHH--HHhh
Q 005939 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEFS--ADEDAH--VIGDCVK--HVLR 243 (668)
Q Consensus 175 ~~~~~VP~vl~~~i~~L~~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~~--~~~d~h--~vA~lLK--~fLR 243 (668)
+..++-|.+..+.+.+|..+|+..|| |-|+++ +...|+.-+..|+ .|+..+. ...+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 99999999999999999999999999 999999 7888888777786 5654333 335899 6888888 8999
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHHcc--CChhHHH----HHHHHHHHHHHhhcccccCCCCcc-ch
Q 005939 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~--~~~~~~~~ri~~l~~lI~~~--LP~~n~~----lL~~Ll~~L~~Va~~s~~NkMt~~-NL 314 (668)
.++..+.|..+|..+..+ +...-.+.|+..++..|++. .|.+|+. ++.+|+.++..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999888777 65555677999999999888 8998887 999999999999999999999999 99
Q ss_pred hhhhcc-cccC-CCCCCCCCcccc-cCCCCCcHHH----HHHHHHHHH-HHHHHHHHHHHhccccCCCCCccccCCCCCC
Q 005939 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (668)
Q Consensus 315 AivfgP-~Llr-~~~~~~~~ie~~-~~~~g~~~~~----~~~~~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~ 386 (668)
+.|++| .|++ |-..+.|.++.. |+..++...+ +++|...++ .++.+|-.+++.|..||.+..+..+..+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 556789999987 9999999999 777777777 5999999999999999999987776655544
Q ss_pred CCCCCC--CCCCCccccccccCCCCCCCCCCCCCCCCCCcccccCCCCccCCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 005939 387 HVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (668)
Q Consensus 387 ~~~~s~--~e~ssd~~~~~~~d~~~~s~e~e~~~~~d~~~e~~~~~~~s~~~~~~~~d~~~~~~~~~~~s~~~~~~~~~~ 464 (668)
.+..+. +.++.+.+.+...-..-.+-.+.++-..+.++......+..+.+....+|++.|.+.+..+++.+++..-..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 443222 122222222221111111111222222222222224456666777788899999999999999998876655
Q ss_pred cccCCCCCCCCCCCCCCCChhHhhhhccccCCCCccccccccccCCCCCCcCccccccccCCCCCCCC-CCCCCCccccc
Q 005939 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (668)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (668)
+...+.++..+...|.+.... .....+.....+.+.+...|+....++.+.+ +++....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d~----------------g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMDL----------------GGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCccccccccccc----------------cCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 566666665553333222222 1222344455666777777787777777776 45666778888
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHH-----hhhhhHHHHHHHHHHhhcchhhhhhHHHHHH
Q 005939 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (668)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (668)
.+-+.++...++|...|||+.+.|++.+|++|.+++|++.||| ++.+|.|+|+||+||+|+|+.||||+||||+
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 4455556677888889999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhh--hcCCccccc
Q 005939 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFS 659 (668)
Q Consensus 618 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 659 (668)
++|+||++|| +++.|||+++|++|+.|.|...| +..+.|+..
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~d 874 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGSD 874 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCccccccccc
Confidence 9999999999 89999999999999999999999 888888876
No 2
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=5.7e-41 Score=334.00 Aligned_cols=189 Identities=20% Similarity=0.373 Sum_probs=168.8
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-C-ccCC--CCCCcchhhhhHHH
Q 005939 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (668)
Q Consensus 166 FG~pL~~ll~~~-~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vA~lLK~ 240 (668)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+++ . ..+. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999974 46999999999999999999999999999999999999999974 3 2332 23589999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcc
Q 005939 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (668)
Q Consensus 241 fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP 320 (668)
|||+||+||||.++|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888899999999977 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 321 ~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
+|+|++... ....+....+.+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999997311 12233445667899999999999998
No 3
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.9e-41 Score=335.26 Aligned_cols=198 Identities=22% Similarity=0.344 Sum_probs=175.5
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccC---CCCCCcchhhhhH
Q 005939 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vA~lL 238 (668)
+++||+||..+++. +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.+|.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 56999999999986 4579999999999999999999999999999999999999999996432 3456999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|+||+.||++|++|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888889999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
||+|+|++..++ ..+.+.....+.+.+|++||+||+.||+++.
T Consensus 161 aP~ll~~~~~~~---------------~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~ 203 (203)
T cd04386 161 APNLLWAKNEGS---------------LAEMAAGTSVHVVAIVELIISHADWFFPGEV 203 (203)
T ss_pred ccccCCCCCCCh---------------hhhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence 999999973211 0111233455688999999999999999863
No 4
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-41 Score=334.07 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=176.1
Q ss_pred ccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhHHHHhhh
Q 005939 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (668)
Q Consensus 165 vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLRe 244 (668)
+||+||..+++ +..||.+|.+|+.||+++|+.+|||||++|+..++++++..+|+|........|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999976666789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||||.+.|+.|+.++...+...++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888899999999976 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
++..+ ...+.....+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 97321 01234456688999999999999999863
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=2.2e-40 Score=331.07 Aligned_cols=191 Identities=23% Similarity=0.420 Sum_probs=169.1
Q ss_pred cccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhh
Q 005939 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (668)
Q Consensus 164 ~vFG~pL~~ll~~~-----~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~l 237 (668)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.||.|.. .+....|||+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 3499999999999999999999999999999999999999999963 45567899999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 005939 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (668)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~i~~~~~--~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA 315 (668)
||.|||+||+||+|.++|+.|+.+... .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788999866 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 316 ivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
+||||+|||++.. + ..+.+..+.+++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~~------~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D-----------PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 1 12345566778899999999999998
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-40 Score=333.77 Aligned_cols=200 Identities=25% Similarity=0.326 Sum_probs=176.6
Q ss_pred ccccchHHHhhhC------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC---ccCCCCCCcchhh
Q 005939 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (668)
Q Consensus 165 vFG~pL~~ll~~~------~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---~~~~~~~d~h~vA 235 (668)
|||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+|++++..++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999863 369999999999999999999999999999999999999999863 2234567999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 005939 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (668)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA 315 (668)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999876 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 316 ivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+||||+||++...++. ........+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 9999999998743221 1123345566677789999999999999999875
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5.4e-40 Score=324.75 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=167.8
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHhhh
Q 005939 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (668)
Q Consensus 166 FG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (668)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999884 3344678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||||+++|+.|+.+....+..+++.+++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999976 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
++... + .+..+..+.++..+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 134566778889999999973
No 8
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-40 Score=332.45 Aligned_cols=210 Identities=21% Similarity=0.347 Sum_probs=175.5
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-CccCCCCCCcchhhhhHHH
Q 005939 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCVKH 240 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~~~~~d~h~vA~lLK~ 240 (668)
++|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..++++|++.++.+ ........++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988886 457999999999999999999999999999999999999999986 3444567899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcc
Q 005939 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (668)
Q Consensus 241 fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP 320 (668)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988878889999999977 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccc---cc--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 321 LLLRPLLAGECELED---DF--DMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 321 ~Llr~~~~~~~~ie~---~~--~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+||+........+.. .+ ...|... ...+.....+..+|.+||+||+.||.-+.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp~ 218 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVPK 218 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986432111000 00 0011111 12234445567899999999999998653
No 9
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=4.7e-40 Score=324.22 Aligned_cols=176 Identities=21% Similarity=0.355 Sum_probs=165.3
Q ss_pred cccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhHHH
Q 005939 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (668)
Q Consensus 166 FG~pL~~ll~~~-----~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (668)
||+||..++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.|++|......+.|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999863 359999999999999999999999999999999999999999997666667899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcc
Q 005939 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (668)
Q Consensus 241 fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP 320 (668)
|||+||+||||.++|+.|+++....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999976 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005939 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (668)
Q Consensus 321 ~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (668)
+|+++ ..+++.||+||+.||++
T Consensus 160 ~l~~~--------------------------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQIS--------------------------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred cccCc--------------------------------HHHHHHHHHHHHHHcCC
Confidence 99864 36899999999999986
No 10
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.5e-40 Score=325.29 Aligned_cols=190 Identities=22% Similarity=0.303 Sum_probs=166.8
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCC----CCCCcchhhhhH
Q 005939 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (668)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~----~~~d~h~vA~lL 238 (668)
+|||+||..++.+ +..||.+|.+|++||+.+|+ +|||||++|+..+++++++.||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999863222 346999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||+++|+.|+++....+.++++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999977 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
||+|||++..... ..+-.++.+....++.||++||.|
T Consensus 159 ~P~L~~~~~~~~~------------~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------------CFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------------cchHHHHHHHHhhhhhheehhhcC
Confidence 9999999732110 011234556667788899999986
No 11
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.5e-39 Score=328.18 Aligned_cols=192 Identities=18% Similarity=0.323 Sum_probs=168.4
Q ss_pred cccchHHHhhhCC------------CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc--CCCCCCc
Q 005939 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (668)
Q Consensus 166 FG~pL~~ll~~~~------------~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~ 231 (668)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..++++++..|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998743 3999999999999999999999999999999999999999998532 3456799
Q ss_pred chhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccc-----c
Q 005939 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (668)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~-----~ 306 (668)
|+||++||.|||+||+||||.++|+.|+.+....+.+.++..++.++ .+||+.|+.+|+||+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888888999998865 69999999999999999999998764 5
Q ss_pred CCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 307 NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
|||++.|||+||||+|||++.... ..+........+|++||+||+.||+.+.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 999999999999999999874221 0112233467899999999999998764
No 12
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=1.7e-39 Score=321.78 Aligned_cols=184 Identities=20% Similarity=0.374 Sum_probs=166.0
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc---CCCCCCcchhhhhHH
Q 005939 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK 239 (668)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vA~lLK 239 (668)
++||++|..+++. +..||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|... .....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999986 457999999999999999999999999999999999999999998643 234679999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhc
Q 005939 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (668)
Q Consensus 240 ~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfg 319 (668)
.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||++|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888889999999977 5999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 320 P~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
|+|||.+... +.+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999987321 1244556788999999975
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-39 Score=320.05 Aligned_cols=183 Identities=27% Similarity=0.401 Sum_probs=163.8
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc-C--CCCCCcchhhhhHHHH
Q 005939 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (668)
Q Consensus 166 FG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~--~~~~d~h~vA~lLK~f 241 (668)
||+||..++++ +..||.+|.+|+.||+.+|+++|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999986 456999999999999999999999999999999999999999998532 2 3457999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhccc
Q 005939 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (668)
Q Consensus 242 LReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~ 321 (668)
||+||+||||+++|+.|+++....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999988899999999977 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 322 Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
|||++... ...+....+++.+|++||+|
T Consensus 160 ll~~~~~~------------------~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET------------------GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc------------------hHHHHHhHHHHHHHHHHhhC
Confidence 99987321 01123445688999999985
No 14
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-37 Score=335.39 Aligned_cols=303 Identities=22% Similarity=0.328 Sum_probs=237.7
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCC--CCCCccceeeeCcEEcCCCcee-eeecCCceE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSV-VVREDKKLL 90 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~l~L~~I~L~~~~sv-~~~~~kk~~ 90 (668)
..+...+++||||.+.|....++|.|+||+....+-.|-.-+-+.. .+++ .+..+.+..|..- ....+|+||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g-----~~~~~~lKsC~RRktdSIdKRFC 334 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMG-----QTATFKLKSCSRRKTDSIDKRFC 334 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCC-----CcceEEehhhccCccccccccee
Confidence 4556678999999999998899999999999875433332222222 1222 2333455554331 123578899
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcchhhccccccccCCCCccccCccccccCCCCCCCcccccch
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPI 170 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a~~~g~~g~f~~~~~~~~e~~~~~~k~~~~~~~~vFG~pL 170 (668)
|-+....+ ..+.++||-++.++..||.|+..+ .+++..+..-...+ -..|
T Consensus 335 FDve~~er-pgviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~----------------~~qL 384 (812)
T KOG1451|consen 335 FDVEVEER-PGVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYK----------------QTQL 384 (812)
T ss_pred eeeeeccc-CCeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhh----------------hhhh
Confidence 98876433 357999999999999999998543 23333332111000 0011
Q ss_pred HHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC----C--ccCCCCCCcchhhhhHHHHhhh
Q 005939 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----K--TEFSADEDAHVIGDCVKHVLRE 244 (668)
Q Consensus 171 ~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g----~--~~~~~~~d~h~vA~lLK~fLRe 244 (668)
.++ -=.||.+||..|+..|++++|+||..|...+|++|+..+-.- + .....++|+-+|.+.||.|||.
T Consensus 385 d~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRn 458 (812)
T KOG1451|consen 385 DDI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRN 458 (812)
T ss_pred hhh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHh
Confidence 111 134899999999999999999999999999999998865432 2 2223578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||+++.+...|+.++...+.+.|+.+|+.++ ++||..||.+|..|+.||..|+.|+.+|.||+.||++||||+|+|
T Consensus 459 LpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlR 537 (812)
T KOG1451|consen 459 LPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLR 537 (812)
T ss_pred CCchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccC
Confidence 9999999999999999999999999999999977 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+. ...+||+|.++.++-||++||+||+.||...+
T Consensus 538 pQ------------------EETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 538 PQ------------------EETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred ch------------------HHHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 97 23588999999999999999999999998766
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-39 Score=320.47 Aligned_cols=190 Identities=21% Similarity=0.361 Sum_probs=169.5
Q ss_pred ccccchHHHhhhC--CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccC----CCCCCcchhhhhH
Q 005939 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (668)
Q Consensus 165 vFG~pL~~ll~~~--~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~d~h~vA~lL 238 (668)
+||+||+..+... ..||.+|.+|+.+|+.+|+++|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887653 579999999999999999999999999999999999999999996432 2346899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
||+|+|++..+ ...........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 11233445667899999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-39 Score=320.63 Aligned_cols=190 Identities=26% Similarity=0.445 Sum_probs=169.2
Q ss_pred CCcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhh
Q 005939 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (668)
Q Consensus 162 ~~~vFG~pL~~ll~~~---~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~l 237 (668)
++++||+||+.++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.+|+|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5679999999999863 5799999999999999999999999999999999999999999964 33333499999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 005939 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (668)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (668)
||.|||+||+||||.+.|+.|+.+.... ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 677899999977 58999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 318 fgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
|||+|||++... ..+....+++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~-------------------~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-------------------MSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-------------------cCHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 013455677899999999999998
No 17
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=5.3e-39 Score=317.69 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=165.5
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHhhh
Q 005939 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (668)
Q Consensus 166 FG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (668)
||+||..++...+.||.+|.+|+.||+.+|+.+|||||++|+..+|+++++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877899999999999999999999999999999999999999999874 3445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIe 366 (668)
++... + + ++.++...++..+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 87321 1 1 3345566677889999874
No 18
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.3e-39 Score=320.69 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=164.1
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHHHHhh
Q 005939 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 166 FG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (668)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999987 56799999999999999999999999999999999999999999863 34457899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 005939 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~~~------------~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~ 311 (668)
+||+||||+++|+.|+.+.... ...+++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2357899999977 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
.|||+||||+|||++.... ..++.+..+.+...+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence 9999999999999984321 1234455667788999999986
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-38 Score=319.04 Aligned_cols=195 Identities=24% Similarity=0.330 Sum_probs=168.6
Q ss_pred ccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhHHH
Q 005939 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (668)
Q Consensus 165 vFG~pL~~ll~~----~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (668)
|||+||..++.. ...||.+|.+|+.||++ |+.+|||||++|+..+++++++.+|+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999998753 46799999999999986 5999999999999999999999999986443 45789999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcc
Q 005939 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (668)
Q Consensus 241 fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP 320 (668)
|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988888888888888755 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 321 ~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+|||+..... .|. . ........++.+|++||+||+.||.-++
T Consensus 158 ~L~~~~~~~~-------~~s----~---~~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMS----S---STEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccc----h---hHHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999873211 111 0 0112345568999999999999998765
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=317.97 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=164.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHHHHhhhCCCCCCChhhH
Q 005939 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (668)
Q Consensus 177 ~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (668)
...||.+|.+|+.||+++|+++|||||++|+..+++++++.|+.|.. .+....|+|+||++||.|||+||+||||+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 45799999999999999999999999999999999999999999963 45567899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccc-----------cCCCCccchhhhhcccccC
Q 005939 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 256 ~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~-----------~NkMt~~NLAivfgP~Llr 324 (668)
+.|+.+.... .++++..++.+| .+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998765 678899999976 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
++..+...+++ ..+.+.....+..||++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98543322221 133455566778999999999999999865
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=322.39 Aligned_cols=188 Identities=20% Similarity=0.277 Sum_probs=161.8
Q ss_pred ccccchHHHhhhC----------------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC----cc
Q 005939 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (668)
Q Consensus 165 vFG~pL~~ll~~~----------------~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~ 224 (668)
|||++|++.++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888642 258999999999999999999999999999999999999999862 22
Q ss_pred CCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHccCChhHH
Q 005939 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (668)
Q Consensus 225 ~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~-----------------~~~~~ri~~l~~lI~~~LP~~n~ 287 (668)
....+++|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.+| .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 3356799999999999999999999999999999987642 35678899999976 69999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 288 ~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
.+|+||+.||++|++|++.|||+++|||+||||+||+++... +. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---~~----------------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---MD----------------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---cC----------------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987211 10 11233467899999999
Q ss_pred ccccC
Q 005939 368 YENIF 372 (668)
Q Consensus 368 ~~~IF 372 (668)
++.+.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 22
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-38 Score=314.59 Aligned_cols=185 Identities=24% Similarity=0.399 Sum_probs=166.3
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc--cCC----CCCCcchhhhhH
Q 005939 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS----ADEDAHVIGDCV 238 (668)
Q Consensus 166 FG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~----~~~d~h~vA~lL 238 (668)
||+||..++.. +..||.+|.+|+.||+.+|+.+|||||++|+..+++++++.+++|.. .+. ...|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999986 45799999999999999999999999999999999999999999852 221 246999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+.+..+...++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888889999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987320 1223446789999999999998
No 23
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-38 Score=311.46 Aligned_cols=161 Identities=27% Similarity=0.509 Sum_probs=151.6
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cC-CCCCCcchhhhhHHHHhh
Q 005939 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF-SADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 166 FG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~d~h~vA~lLK~fLR 243 (668)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. .+ ..+.|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999999999999999999853 33 245789999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhccccc
Q 005939 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Ll 323 (668)
+||+||||+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999976 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 005939 324 RPLL 327 (668)
Q Consensus 324 r~~~ 327 (668)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 24
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-38 Score=314.55 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.9
Q ss_pred ccccchHHHhhh------CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHHhcCCc-cC---CCCCCcch
Q 005939 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKT-EF---SADEDAHV 233 (668)
Q Consensus 165 vFG~pL~~ll~~------~~~VP~vl~~~i~~L~~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~---~~~~d~h~ 233 (668)
|||+||..+++. ...||.+|.+|+.||+++| +.+|||||++|+..+++++++.++.|.. .+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 3469999999999999986 7999999999999999999999999842 22 23579999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005939 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (668)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~-~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~ 312 (668)
||++||.|||+||+||||.++|+.|+.+.+.. +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988766 7788999999976 689999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005939 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (668)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (668)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999874 5799999999999986
No 25
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.2e-38 Score=311.38 Aligned_cols=185 Identities=25% Similarity=0.374 Sum_probs=168.3
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHhhh
Q 005939 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (668)
Q Consensus 166 FG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (668)
||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3345678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998888889999999876 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
++... + .+.+++...+...+|++||+.
T Consensus 160 ~~~~~-------------~---~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-------------D---PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-------------C---HHHHHHHHHHHHHHHHHHhhC
Confidence 87321 1 134567778889999999974
No 26
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.2e-38 Score=316.39 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=163.4
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHhh
Q 005939 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 166 FG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLR 243 (668)
||+||..++.+ .+.||.+|.+|+.||+++|+.+|||||++|+..++++++..|++|. .......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 5789999999999999999999999999999999999999999985 334556899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 005939 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~~~--------------~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkM 309 (668)
+||+||||+++|+.|+.+.... +...++..++.+| ..||+.|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999886531 2245788999966 699999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
++.|||+||||+|||++.... ...++.+....++..+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 01133455677888999999986
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-38 Score=316.99 Aligned_cols=187 Identities=21% Similarity=0.312 Sum_probs=160.2
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHHHHhh
Q 005939 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 166 FG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (668)
||+||..++.. .++||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999886 46899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhh
Q 005939 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~~~---~-------------------~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va 301 (668)
+||+||||+++|+.|+.+.... + ...++..++.+| ++||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876421 0 123467888866 6999999999999999999999
Q ss_pred cccccCCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 302 ~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
+|++.|+|++.|||+||||+||||..... ...++.+..+.++..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873210 11133455667788999999975
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2e-37 Score=308.74 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=151.6
Q ss_pred cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc---CCCCCCcchhhhhHHHH
Q 005939 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (668)
Q Consensus 166 FG~pL~~ll~~~~-~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~d~h~vA~lLK~f 241 (668)
||+||..++++.. .||.+|.+|++||+.+|+.+|||||++|+..+++++++.||+|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998754 6999999999999999999999999999999999999999998532 24568999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhccc
Q 005939 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (668)
Q Consensus 242 LReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~ 321 (668)
||+||+||||+++|+.|+.+....+...++.+++.++ .+||++|+.+|+||+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999999888889999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 005939 322 LLRPLLAG 329 (668)
Q Consensus 322 Llr~~~~~ 329 (668)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2e-37 Score=307.30 Aligned_cols=184 Identities=26% Similarity=0.425 Sum_probs=163.1
Q ss_pred cccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHH
Q 005939 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (668)
Q Consensus 164 ~vFG~pL~~ll~~---~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK 239 (668)
++||+||..++++ .++||.+|.+|+.||+.+|+.+|||||++|+...++++++.+++|.. .+..+.|||+||++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 35799999999999999999999999999999999999999999964 3445689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 240 ~fLReLPePLlp~~l~~~~i~~~~~~-~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
.|||+||+||||.++|+.|+.+++.. ...+++..++.+| .+||+.|+.+|.+|+.||++|++|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 5677889999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
||+|||.+.. .+ .+.....++.|++.||+|
T Consensus 160 ~P~l~~~~~~----~~---------------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VE---------------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----cc---------------cHHHHHHHHHHHHHHhcC
Confidence 9999998731 11 123345578899999987
No 30
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.1e-37 Score=309.98 Aligned_cols=186 Identities=23% Similarity=0.371 Sum_probs=157.7
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc-CC-CCCCcchhhhhHHHHhh
Q 005939 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 166 FG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vA~lLK~fLR 243 (668)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..+++++++.|++|... +. ..+|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3444 78899999998 999999999999999999999999999643 32 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 005939 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~------------~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~ 311 (668)
+||+||||.++|+.|+.+.+ ..+.+.++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234567788999866 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
.|||+||||+||||+... ...+ .....+++.||++||+||+.||+.+.
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986211 1111 12345678999999999999999876
No 31
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.5e-37 Score=307.75 Aligned_cols=195 Identities=22% Similarity=0.318 Sum_probs=160.5
Q ss_pred cccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC--ccCC--CCCCcchhhhhH
Q 005939 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (668)
Q Consensus 166 FG~pL~~ll~~~---~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~--~~~~--~~~d~h~vA~lL 238 (668)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+..+++++++.|+++. ..+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 469999999999999999999999999999999999999999874 2222 234899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~---~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA 315 (668)
|.|||+||+||||.++|+.|+++..... ...++..++.+| ++||+.|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876533 234466788766 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCC-CcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005939 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (668)
Q Consensus 316 ivfgP~Llr~~~~~~~-~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (668)
+||||+||+++..... .+....+|....+ ....+...++++||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence 9999999999865421 2222223322222 22345678899999865
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=357.50 Aligned_cols=339 Identities=18% Similarity=0.234 Sum_probs=245.3
Q ss_pred cEEEEeeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceee-----eCcEEcCCCceeeee
Q 005939 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLT-----LGGIDLNNSGSVVVR 84 (668)
Q Consensus 18 ~V~KeGyL~l~----Kkg----~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~-----L~~I~L~~~~sv~~~ 84 (668)
...|+||||+. |+| .....|+.-|.+|.++.|+.|++.....++..+...-. -..+.++.|......
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 35688999954 333 35788999999999999999998776433321111100 111223332221111
Q ss_pred --cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcchhhccc-------------ccc----------
Q 005939 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI---------- 139 (668)
Q Consensus 85 --~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a~~~g~-------------~g~---------- 139 (668)
..++.+|.++. .+...+.|+|++.++|..|+..+++..........|++. +++
T Consensus 1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence 12233444432 234679999999999999999997765422111111110 111
Q ss_pred -----------ccCCCCcc------------ccCccccccCCCCC-----------------------------CCcccc
Q 005939 140 -----------FRNDTNDT------------IEGSFHQWRDKRPV-----------------------------KSLVVG 167 (668)
Q Consensus 140 -----------f~~~~~~~------------~e~~~~~~k~~~~~-----------------------------~~~vFG 167 (668)
|.-..+.. ...+..++|+++.- +-.+||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 11100000 00111222222111 124899
Q ss_pred cchHHHhhh--CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc------cCCCCCCcchhhhhHH
Q 005939 168 RPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK 239 (668)
Q Consensus 168 ~pL~~ll~~--~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~d~h~vA~lLK 239 (668)
|+|.+.--. .+.||.+|+.|+..++.+||.+.||||++||...|..|.+.++++.+ .++.+.|+++|.+|||
T Consensus 1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence 999553221 35699999999999999999999999999999999999999999843 2346689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhc
Q 005939 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (668)
Q Consensus 240 ~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfg 319 (668)
.|||.||+||||..+|..||++-+..+.-+|+..||.|| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+||
T Consensus 1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999999999999999999999966 7999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 320 P~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
|+|+|++. | + +..++.++..++.||+.||.+|+++|++.-
T Consensus 1319 PsiVRts~-------D-------n---m~tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1319 PSIVRTSD-------D-------N---MATMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred cceeccCC-------c-------c---HHHHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 99999872 1 1 233456778899999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-36 Score=299.27 Aligned_cols=180 Identities=21% Similarity=0.387 Sum_probs=162.3
Q ss_pred ccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc---cCCCCCCcchhhhhHHHHhh
Q 005939 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDCVKHVLR 243 (668)
Q Consensus 167 G~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~d~h~vA~lLK~fLR 243 (668)
|.+|+...-...+||.+|.+|+.||+.+|+.+|||||++|+..+++++++.|+.+.. ......|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 777877777788999999999999999999999999999999999999999988642 22456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhccccc
Q 005939 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (668)
Q Consensus 244 eLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Ll 323 (668)
+||+||||.++|+.|+.+.+..+..+++..++.+| .+||++|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888899999999977 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005939 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (668)
Q Consensus 324 r~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (668)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 1223456789999999998
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=4.4e-36 Score=298.39 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=158.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHHHHhhhCCCCCCChhhH
Q 005939 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (668)
Q Consensus 177 ~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (668)
...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 45699999999999999999999999999999999999999998853 34556799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCccc
Q 005939 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (668)
Q Consensus 256 ~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~ 335 (668)
+.|+++.+..+.+.++..++.+| ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+++...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999888889999999977 59999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005939 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (668)
Q Consensus 336 ~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~I 371 (668)
..++++..+..++.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 12455667777889999999987653
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-36 Score=303.13 Aligned_cols=189 Identities=16% Similarity=0.241 Sum_probs=161.6
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcC--CCcC----CeeecCCCHHHHHHHHHHHhcCCccC-----CCCCCcch
Q 005939 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (668)
Q Consensus 166 FG~pL~~ll~~~-~~VP~vl~~~i~~L~~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~d~h~ 233 (668)
||+||..+++.. ..||.+|.+|+.||+.+| +..+ ||||++|+...+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999864 479999999999999975 3333 99999999999999999999985332 34689999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccC
Q 005939 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (668)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~i~~~~~------~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~N 307 (668)
||++||.|||+||+||||+++|+.|+++... .+.++|+.+++.+| .+||++|+.+|++|+.||++|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 45789999999976 6999999999999999999999987665
Q ss_pred ---CCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005939 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (668)
Q Consensus 308 ---kMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (668)
||+++|||+||||+|+|+...... .....++..+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~-------------------~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLL-------------------TIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCccccc-------------------ccccHHHHHHHHHHHHhHHHhccc
Confidence 699999999999999998742211 011245679999999999999986
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.9e-36 Score=297.51 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=153.3
Q ss_pred cccchHHHhhhC------CCCcHHHHHHHHHHHh-cCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhH
Q 005939 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (668)
Q Consensus 166 FG~pL~~ll~~~------~~VP~vl~~~i~~L~~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (668)
||+||++++.+. ..||.+|.+|++||.+ +|+.+|||||++|+..+++++++.+++|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhccc--ccCCCCccchhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s--~~NkMt~~NLAi 316 (668)
|.|||+||+||||.++|+.|+.+... ...++.+| .+||+.|+.+|.||+.||+.|++++ +.|||+++|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999887532 23466655 6999999999999999999999754 789999999999
Q ss_pred hhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 317 vfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
||||+|||++..+ + ...+.++.+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~--------------~---~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDD--------------P---RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCC--------------H---HHHHHccHHHHHHHHHHhcC
Confidence 9999999987321 1 22345566788999999987
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.3e-36 Score=298.78 Aligned_cols=171 Identities=24% Similarity=0.403 Sum_probs=150.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH-HhcC-----CccCCC-CCCcchhhhhHHHHhhhCCCCCC
Q 005939 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (668)
Q Consensus 178 ~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~d~h~vA~lLK~fLReLPePLl 250 (668)
+..|.||.+|+.||+.+|+.+|||||++|+..+|++++.. ++.+ ...+.. ..|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456689999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCC
Q 005939 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (668)
Q Consensus 251 p~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~ 330 (668)
|+++|+.|+.+....+.+.++..++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++..
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~-- 182 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE-- 182 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc--
Confidence 9999999999999988899999999977 6999999999999999999999999999999999999999999998721
Q ss_pred CCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 331 ~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
..+++......+.||++||+|
T Consensus 183 ----------------~~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 183 ----------------TVAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred ----------------cHHHHHHhHHHHHHhhhHhcC
Confidence 023345667788899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=2.9e-35 Score=292.48 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=150.6
Q ss_pred hHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHhhhCCCC
Q 005939 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (668)
Q Consensus 170 L~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPeP 248 (668)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. .......|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 3444444578999999999999999999999999999875 788999999863 33345789999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCC
Q 005939 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (668)
Q Consensus 249 Llp~~l~~~~i~~~~-~~~~~~ri~~l~~lI~-~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~ 326 (668)
|||+++|+.|+++.. ..+.++++..++.+|. ..||+.|+.+|+|||.||++|++|+..|+|++.|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788999998662 27999999999999999999999999999999999999999999997
Q ss_pred CCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005939 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (668)
Q Consensus 327 ~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~ 368 (668)
.... ....+...+|++||.++
T Consensus 164 ~~~~---------------------~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---------------------DSPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---------------------cchhhHHHHHHHHHHHH
Confidence 4311 11234678999999864
No 39
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=5.2e-33 Score=309.28 Aligned_cols=323 Identities=19% Similarity=0.325 Sum_probs=240.5
Q ss_pred CcEEEEeeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee--eecC
Q 005939 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VRED 86 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~--------~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--~~~~ 86 (668)
..+..+|+||..-... .+..-.++||||-|+.|+||.+.....|. +.|.+.....+. ..+.
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~---------~lI~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN---------GLININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC---------ceeeccceEEEeecCCCC
Confidence 3455669999652211 24457899999999999999999887744 344444432221 1121
Q ss_pred ---CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcchh--------hc-------------cccccccC
Q 005939 87 ---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VM-------------GHNGIFRN 142 (668)
Q Consensus 87 ---kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a~--------~~-------------g~~g~f~~ 142 (668)
-.++|++..-...+|.|+|-+++.+++..|..+|.++. .|.-+. .. .++|+|+.
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf--vp~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF--VPLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc--CchHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 13555555445668999999999999999999998865 232221 01 24788887
Q ss_pred CCCcc--------cc---------------CccccccCCCCCCCcccccch----------------------------H
Q 005939 143 DTNDT--------IE---------------GSFHQWRDKRPVKSLVVGRPI----------------------------L 171 (668)
Q Consensus 143 ~~~~~--------~e---------------~~~~~~k~~~~~~~~vFG~pL----------------------------~ 171 (668)
+.+.. .+ ++..+.-++...--..-|+.| .
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 66532 11 111111111110000112222 1
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccC---CCCCCcchhhhhHHHHhhhCCCC
Q 005939 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (668)
Q Consensus 172 ~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~d~h~vA~lLK~fLReLPeP 248 (668)
+..-..+.||.+|..||.|+.++|+..|||||++|...++.+|...|-+....+ ..+.-+.+|+++||.|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 111114579999999999999999999999999999999999999998764222 23467899999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCC
Q 005939 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (668)
Q Consensus 249 Llp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~ 328 (668)
|+|.++|..|+++....+.++++..+..+| ..||..||.+|+.||.||++|..+++.|+|+++|||+||||+||...-
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg- 876 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG- 876 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC-
Confidence 999999999999999999999999999987 599999999999999999999999999999999999999999998651
Q ss_pred CCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 329 ~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+..+..+|++-||.+|..+|.-++
T Consensus 877 ------------------------qdehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 877 ------------------------QDEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred ------------------------CchhhhhHHHHHhcCceEEEEecH
Confidence 113567899999999999999765
No 40
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=305.50 Aligned_cols=321 Identities=19% Similarity=0.291 Sum_probs=235.4
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCC---CccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecCh
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~---~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~ 110 (668)
...|..-|..+.++.++||.+...+..-+ ...-........+.+.............+.+......+..|++...++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 35599999999999999998876654332 111111111122222111111111122234443344567899999999
Q ss_pred HHHHHHHHHHHHHHhhCCcchhhcccc------ccccCCCC---------------------ccc---cC----------
Q 005939 111 EDLYEWKTALELALAQAPSAALVMGHN------GIFRNDTN---------------------DTI---EG---------- 150 (668)
Q Consensus 111 eE~~eWi~AL~~ai~~ap~~a~~~g~~------g~f~~~~~---------------------~~~---e~---------- 150 (668)
.....|-.++..++...++.+....++ +.-..... ..+ .+
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~ 429 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQ 429 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchH
Confidence 999999999999998665533221110 00000000 000 00
Q ss_pred -----------ccccccCCC-CCCCcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH
Q 005939 151 -----------SFHQWRDKR-PVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE 217 (668)
Q Consensus 151 -----------~~~~~k~~~-~~~~~vFG~pL~~ll~~~-~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ 217 (668)
-....+.++ +...+|||++|..+|++. +.||.+|.+|+..|+..|++..||||++|+...|++|+.+
T Consensus 430 ~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~ 509 (650)
T KOG1450|consen 430 KKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQ 509 (650)
T ss_pred HHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHh
Confidence 001112222 223789999999999874 5699999999999999999999999999999999999999
Q ss_pred HhcCC-ccC--CCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHH
Q 005939 218 YEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294 (668)
Q Consensus 218 ld~g~-~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll 294 (668)
+|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||+
T Consensus 510 ~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~lv 588 (650)
T KOG1450|consen 510 SDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYLV 588 (650)
T ss_pred cCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHHH
Confidence 99643 333 34479999999999999999999999999999999999988899999999987 599999999999999
Q ss_pred HHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 005939 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (668)
Q Consensus 295 ~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~ 373 (668)
.||.+|..|++.|||+.+||||||||+|+.+.... + ..+..+..+..||+.||+++..+|+
T Consensus 589 ~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~-------~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 589 RHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------S-------SEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHhccccccccccceEEEeccccccccccc-----------c-------chhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999975221 0 1234456688999999999999997
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=5.2e-32 Score=264.15 Aligned_cols=170 Identities=29% Similarity=0.488 Sum_probs=155.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccC--CCCCCcchhhhhHHHHhhhCCCCCCChhhHH
Q 005939 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (668)
Q Consensus 179 ~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~ 256 (668)
.||.+|..|+.||+++|+++|||||++|+..+++++++.++.|.... ....|||+||++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999996544 6789999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccc
Q 005939 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (668)
Q Consensus 257 ~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~ 336 (668)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|+|++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998888889999999976 69999999999999999999999999999999999999999999987321
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
...+....+...+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 11245567788999999987
No 42
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-31 Score=287.68 Aligned_cols=209 Identities=24% Similarity=0.341 Sum_probs=174.4
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC---ccCCCCCCcchhhhhH
Q 005939 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIGDCV 238 (668)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---~~~~~~~d~h~vA~lL 238 (668)
+.||||||..++++. -.||.+|.+++.||+++|++++||||++|...+|+.|++.++..- ...++....|+||++|
T Consensus 298 ~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlL 377 (674)
T KOG2200|consen 298 GGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLL 377 (674)
T ss_pred CceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHH
Confidence 579999999999974 469999999999999999999999999999999999999988752 2334566789999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|+|||+||+||||.++.+.|+.+++.....+++++++.+|+ .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+||
T Consensus 378 KqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvcm 456 (674)
T KOG2200|consen 378 KQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCM 456 (674)
T ss_pred HHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC----CcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 319 APLLLRPLLAGEC----ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 319 gP~Llr~~~~~~~----~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
||+||........ .+.. -...|.... ..+....-+..++..||.+++.+|.-+.
T Consensus 457 APsLF~l~~~~~d~spr~~~~-k~~~g~p~~---kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 457 APSLFHLNALKLDSSPRVRQK-KSETGKPDQ---KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred cchHHhhccCCCCCCcccccc-ccccCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999975532211 0000 000111111 1123333466889999999999999866
No 43
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=2e-29 Score=280.58 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=171.8
Q ss_pred CCCCCcccccchHHHhhh----CCCCcHHHHHHHH-HHH-hcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcc
Q 005939 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH 232 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~vl~~~i~-~L~-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h 232 (668)
......||||++..+-.. .+.||.++.-+.. +|+ ++|++.|||||++|...+++.++++||.|.+......|||
T Consensus 140 ls~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH 219 (577)
T KOG4270|consen 140 LSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVH 219 (577)
T ss_pred ccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHH
Confidence 334567999998766543 3447999988887 655 4899999999999999999999999999964433378999
Q ss_pred hhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCcc
Q 005939 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (668)
Q Consensus 233 ~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~ 312 (668)
+||++||.|||+||+|++++.+|++|+.+....+.+++...++.++ .+||+.|+.+|+|+|.||+.|+++++.||||++
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999999965 699999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005939 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (668)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (668)
||||||||+|+|+... ...++.+....+.+..+|+..|++++..|+....
T Consensus 299 NlAiV~gPNl~~~~~p---------------~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKDP---------------LTALMYAVQVSNFLKGLIEKTLEERDTSFPGELE 348 (577)
T ss_pred hceeEecCCccccCCh---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 9999999999998721 2333444455555667777888888888887763
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=1.2e-30 Score=264.67 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=138.0
Q ss_pred CcccccchHHHhhh-----------------------CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHH----HHHHH
Q 005939 163 SLVVGRPILLALED-----------------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRV 215 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-----------------------~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~----v~~L~ 215 (668)
.++||.+|..+..- ...||.+|.+|++||+++|+.+|||||++|+... +++++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~ 89 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR 89 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence 45788888776641 1248999999999999999999999999999999 99999
Q ss_pred HHHhcCCccCCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHc-cCChhHHHHHHHHH
Q 005939 216 QEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRIL 294 (668)
Q Consensus 216 ~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~-~LP~~n~~lL~~Ll 294 (668)
+.+|+|.... ...|+|+||++||.|||+||+||||+++|+.|+.+... + ...++.+ ++ .||+.|+.+|.||+
T Consensus 90 ~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~----~~~~~~l-l~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 90 DALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-N----EEDKRQV-IRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-c----HHHHHHH-HHhhCCHHHHHHHHHHH
Confidence 9999985433 67899999999999999999999999999999998622 2 1234553 36 89999999999999
Q ss_pred HHHHHhhcccccCCCCccchhhhhcccccCCCC
Q 005939 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (668)
Q Consensus 295 ~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (668)
.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 999999999999999999999999999999984
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=7.2e-30 Score=246.50 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=152.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc-CCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHH
Q 005939 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (668)
Q Consensus 181 P~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i 259 (668)
|.+|..|+.||+++|+.++||||++|+..+++++++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999654 56788999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccccCC
Q 005939 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (668)
Q Consensus 260 ~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~ 339 (668)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998888899999999977 59999999999999999999999999999999999999999999987321
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (668)
Q Consensus 340 ~g~~~~~~~~~~~~~~~~~~iVe~LIen 367 (668)
.........+..+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 12234556678999999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-30 Score=291.83 Aligned_cols=185 Identities=21% Similarity=0.381 Sum_probs=165.5
Q ss_pred CCCCcccccchHHHhh-----hCCCCcHHHHHHHHHHH-hcCCCcCCeeecCCCHHHHHHHHHHHhcC-Ccc---CCCCC
Q 005939 160 PVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTE---FSADE 229 (668)
Q Consensus 160 ~~~~~vFG~pL~~ll~-----~~~~VP~vl~~~i~~L~-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~---~~~~~ 229 (668)
..++.|||.||...+. +..+||.||.+|++||+ .+|++.|||||++|.+..|+.|++.||.+ +.+ ...+.
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~ 973 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEM 973 (1112)
T ss_pred ceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccc
Confidence 3468899988765543 24579999999999999 59999999999999999999999999998 332 24678
Q ss_pred CcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 005939 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (668)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkM 309 (668)
|||+|||+||+|||+||+|||+.++|..|.......++..+...+..+| ..||++|+.+|.+|+.||++|+.++.+|||
T Consensus 974 dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 974 DVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred cHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999987 489999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005939 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (668)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (668)
+++||||||+|+|.+|. .+...||.+|+.||.+...
T Consensus 1053 nlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred cccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchH
Confidence 99999999999999985 3466788889999998663
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.96 E-value=3.4e-29 Score=238.22 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=136.2
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc--CCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHH
Q 005939 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (668)
Q Consensus 181 P~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~ 258 (668)
|.+|..|++||+++|+.++||||++|+..+++++++.++.|... .....|+|+||++||.||++||+||||.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999765 6788999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCC
Q 005939 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (668)
Q Consensus 259 i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~ 326 (668)
+.+....+..+++..++.++ .+||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888888999999999976 69999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.96 E-value=1.5e-28 Score=258.71 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=175.4
Q ss_pred CCCCCCCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCC-Cc
Q 005939 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DA 231 (668)
Q Consensus 157 ~~~~~~~~vFG~pL~~ll~~---~~~VP~vl~~~i~~L~~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~-d~ 231 (668)
.+.++++.-||+||..+.+. ...+|.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+..+.+ |+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35778899999999888775 4679999999999999999 9999999999999999999999999975554444 59
Q ss_pred chhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 005939 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (668)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~ 311 (668)
|..|.+||.|||+||+||++.++|..+....... ...+...++.+|-.+||+.|+.+|++++.||.+|++|+.+|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~-~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVD-KSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccch-HHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999999999999999887766543 467888888888666999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005939 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (668)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (668)
.|||+||||+|+|+..... .+...+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999873210 1234556889999999999999998774
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.2e-27 Score=257.21 Aligned_cols=204 Identities=22% Similarity=0.386 Sum_probs=169.0
Q ss_pred CCcccccchHHHhhh-------------CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-----Cc
Q 005939 162 KSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----KT 223 (668)
Q Consensus 162 ~~~vFG~pL~~ll~~-------------~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-----~~ 223 (668)
...+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|.+.|+++ +.
T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~ 142 (412)
T KOG2710|consen 63 DGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDV 142 (412)
T ss_pred ceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccc
Confidence 455677766555332 234899999999999999999999999999999999999999997 35
Q ss_pred cCCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcc
Q 005939 224 EFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH 303 (668)
Q Consensus 224 ~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~ 303 (668)
..++.+++|+||++||.|||+||+||||.++|+.|+..+......+++..++.++. .||++|+.+|.+|+.||+.|+.|
T Consensus 143 ~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~ 221 (412)
T KOG2710|consen 143 NDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASH 221 (412)
T ss_pred cccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhcc
Confidence 56678899999999999999999999999999999999999987799999999775 99999999999999999999999
Q ss_pred cccC-----------CCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 304 AHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 304 s~~N-----------kMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
++.| +|++.|||+||+|+|+....... +..++.+-. .......+..++++||+||+.+|
T Consensus 222 s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~----~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~f 291 (412)
T KOG2710|consen 222 AEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSH----KELSVTGVA------NESESEAIVNFAQMMIENLEALF 291 (412)
T ss_pred cccccccccccccCcccchhhhhhhhcchhhhcccCCC----ccccccccc------chhhHHHHHHHHHHhhhhHHHhh
Confidence 9999 99999999999999999532111 111111111 01122346789999999999999
Q ss_pred CCCC
Q 005939 373 DDES 376 (668)
Q Consensus 373 ~~~~ 376 (668)
..++
T Consensus 292 ~ip~ 295 (412)
T KOG2710|consen 292 QIPP 295 (412)
T ss_pred cCCc
Confidence 9444
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-27 Score=259.31 Aligned_cols=241 Identities=18% Similarity=0.186 Sum_probs=214.2
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhH
Q 005939 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (668)
.+.++.+||.||..+|.+.+ +|..+++++.+|...|.-++||||..++...+++|++.++.|..+-.....+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45678899999999999987 99999999999999999999999999999999999999999977777788999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||.+|..+|...+|+.|+-.....+.+++|.+|+++. .+||..|..+|+||+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 9999999999999999999999999999999999999955 799999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccccCCCCCCCCCCCCCCCCCc
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~~~~~s~~e~ssd 398 (668)
+|+++|++.....+.+.+|. +++.-+++|||+||-.||++++... +..++..+...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence 99999998665554444322 2355679999999999999999654 4455556677788888
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 005939 399 EENLDMKNNGYHDAQNEVDPESDD 422 (668)
Q Consensus 399 ~~~~~~~d~~~~s~e~e~~~~~d~ 422 (668)
-+..+. |+.||+.+++++...|-
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888887 99999999998886654
No 51
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-24 Score=257.40 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=150.4
Q ss_pred ccccchHHHhh-hCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhHHHHh
Q 005939 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (668)
Q Consensus 165 vFG~pL~~ll~-~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fL 242 (668)
.||+.|..++. ....||.++.+|+.||+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|++++|||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999998 56789999999999999999999999999999999999999999986 56667899999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhh
Q 005939 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (668)
Q Consensus 243 ReLPePLlp~~l~~~~i~~~~~~~~~------~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAi 316 (668)
|+||+|||++.+|+.|+.+.+..... +++..+..++ +.||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998873333 4888999866 6999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 005939 317 CMAPLLLRPLL 327 (668)
Q Consensus 317 vfgP~Llr~~~ 327 (668)
||||+|||++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 52
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=222.87 Aligned_cols=182 Identities=21% Similarity=0.337 Sum_probs=153.3
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchhhhhHHHHhhhCCCCCCChhhHH
Q 005939 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (668)
Q Consensus 178 ~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~ 256 (668)
..||.+|..|+..|+.+|+..+||||++|....+++|++.|-+|+. ......|+|++|++||.|||+|.+||||+.+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 4589999999999999999999999999999999999999999974 445678999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccc
Q 005939 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (668)
Q Consensus 257 ~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~ 336 (668)
.|+++....+...-+.++-..|. .||..||.+|.|||-|+++||+ +..|||+..|||.+|||+++--+..++
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p------ 511 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP------ 511 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc------
Confidence 99999999998888888888786 8999999999999999999998 889999999999999999998653221
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHH----hccccCCCCC
Q 005939 337 FDMNGDNSAQLLAAANAANNAQAIIATLLE----EYENIFDDES 376 (668)
Q Consensus 337 ~~~~g~~~~~~~~~~~~~~~~~~iVe~LIe----n~~~IF~~~~ 376 (668)
....++..+..+.++|+.|++ +|.++.+.+.
T Consensus 512 ---------d~~~~l~dv~~q~rvmkaLlelp~~yWsqfl~v~~ 546 (604)
T KOG3564|consen 512 ---------DQVTMLQDVKTQPRVMKALLELPLEYWSQFLGVEP 546 (604)
T ss_pred ---------cHhHHHHhhhhhHHHHHHHHhCCHHHHHHhhcccc
Confidence 012234444555666666654 4555444433
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.76 E-value=7.2e-19 Score=199.22 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=148.0
Q ss_pred CCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-CccC-CCCCCcchhhhhHH
Q 005939 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (668)
Q Consensus 162 ~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~-~~~~d~h~vA~lLK 239 (668)
....||.||..+......+|.++++|+.||++.|+.+|||||++|+......++.+|.+. +... ..+..+|+||+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 356899999998888889999999999999999999999999999999999999999884 3322 23567999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhc
Q 005939 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (668)
Q Consensus 240 ~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfg 319 (668)
.||..||+||+|+.+...|.++..+.+...++..++..+ ..||+.|+.+|+|++.||.+|+.....|.||..||.|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999966 5999999999999999999999999999999999999999
Q ss_pred cccc
Q 005939 320 PLLL 323 (668)
Q Consensus 320 P~Ll 323 (668)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=5.3e-18 Score=173.26 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=138.3
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc--cCC--CCCCcchhhhh
Q 005939 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS--ADEDAHVIGDC 237 (668)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~~--~~~d~h~vA~l 237 (668)
..+||.+|+-++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|+..|+...- ..- ..-|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 349999999999874 5678899999999999999999999999999999999999998642 222 23588999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 005939 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (668)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~i~~~~~---~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (668)
+|.||||||+|||+...|...+++... .+.+.-...+-. |+..||..++.+|-.++.||..|..+++.|+||+..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888777542 222333444444 4468999999999999999999999999999999999
Q ss_pred hhhhcccccCCCC
Q 005939 315 AACMAPLLLRPLL 327 (668)
Q Consensus 315 AivfgP~Llr~~~ 327 (668)
|.||||.||....
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999986553
No 55
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.70 E-value=1.3e-16 Score=142.48 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=70.8
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-----CCceEEEE
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL 93 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-----~kk~~fvi 93 (668)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+....... .+.++|.|
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I 70 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV 70 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence 78999666 7777789999999999999999999987755 45667777543321111 14456665
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.. ..|+|+|+|+|++|+++||.+|+..+
T Consensus 71 ~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 71 CT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 33 27999999999999999999998765
No 56
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.68 E-value=2.7e-16 Score=157.57 Aligned_cols=185 Identities=16% Similarity=0.210 Sum_probs=145.1
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHH--HHHHhcCCCc--CCeeecCCCHHHHHHHHHHHhcCCc--cCCCCCCcc----
Q 005939 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAH---- 232 (668)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~vl~~~i--~~L~~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~--~~~~~~d~h---- 232 (668)
++||+|+.+-+.+ ....|..+.... +++..+.++. -|+||.++...-+...++.++.... ........+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899998665554 445677776555 5555555554 7999999988889999988887521 111111122
Q ss_pred -------hhhhhHHHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhc
Q 005939 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (668)
Q Consensus 233 -------~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~---~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~ 302 (668)
+||.+++.||++||+||+|..+|+.|+.+++. ...+..+++++.+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988888773 347889999999886 9999999999999999999999
Q ss_pred cc-------ccCCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005939 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (668)
Q Consensus 303 ~s-------~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (668)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||.-+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 26777 999999999999872 11 1235689999999999999876
Q ss_pred C
Q 005939 376 S 376 (668)
Q Consensus 376 ~ 376 (668)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 5
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.66 E-value=3.7e-16 Score=140.34 Aligned_cols=90 Identities=30% Similarity=0.484 Sum_probs=66.0
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCce---ee---e---ecCCceE
Q 005939 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS---VV---V---REDKKLL 90 (668)
Q Consensus 21 KeGyL~l~Kkg~~-~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s---v~---~---~~~kk~~ 90 (668)
|+|||. |+|+. .++||+|||||+++.|+||+++.+..|. |.|.|..+.. |. + .....++
T Consensus 1 KeG~L~--K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~---------G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFME--KTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAK---------GEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeEE--ecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcC---------cEEEeeccccceeEeccCCccccccccce
Confidence 689554 88875 6999999999999999999998876643 3455443221 11 0 1112225
Q ss_pred EEE-ccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 91 TVL-FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 91 fvi-t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
|.| ++ +|+|+|+|+|++|+.+||.||++++.
T Consensus 70 F~i~t~----~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTP----ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeC----CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 544 44 89999999999999999999999985
No 58
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.64 E-value=6.6e-16 Score=137.58 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=71.5
Q ss_pred EEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC------CceEE
Q 005939 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (668)
Q Consensus 21 KeGyL~l~Kkg~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~~f 91 (668)
.+| |+.++|+ .+++|++|||+|+++.|+|||+.....| ..+.|+|..|.+|....+ +.++|
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence 479 6668887 7999999999999999999998866442 125688888887755432 13567
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.+... .|+|||+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 55432 6999999999999999999998774
No 59
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.64 E-value=1.3e-15 Score=134.94 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=66.7
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCC
Q 005939 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (668)
Q Consensus 22 eGyL~l~Kkg~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~ 99 (668)
+|||++...++..++|++|||||++ +.|+||+++.+.. ++|.|+|..+..+.....++..|.|.. .
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t---~ 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS---N 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc---C
Confidence 6977744333248999999999984 5899999988765 566778877554433333344554433 2
Q ss_pred CceEEEEecChHHHHHHHHHHHHH
Q 005939 100 GRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 100 gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
+|+|+|+|+|++|+++||.+|+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999875
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.63 E-value=2.1e-15 Score=133.22 Aligned_cols=92 Identities=26% Similarity=0.341 Sum_probs=68.7
Q ss_pred EEeeeeeeecC-C-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEEEccCC
Q 005939 21 KSGPLFISSKG-I-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (668)
Q Consensus 21 KeGyL~l~Kkg-~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fvit~~~ 97 (668)
++|||+++.+. + ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+.++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEK---------AEGLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCc---------cceEEEccCCEEEEchhcCCceEEEECC--
Confidence 58988865432 2 477999999999999999999998765 334566666543322 234566777753
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHH
Q 005939 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 98 ~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
++.++|+|+|+|++++++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 33599999999999999999999864
No 61
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.61 E-value=2.5e-15 Score=135.65 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=68.1
Q ss_pred EEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec---------CC
Q 005939 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---------DK 87 (668)
Q Consensus 20 ~KeGyL~l~Kkg~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---------~k 87 (668)
+|+|||+++.++. ..++|++|||||+++.|+||+++.+... .+.|.|+|..+..+.... .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~-------~~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG-------SKKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc-------CcceeEECCcceEEEEecCCcCccccccc
Confidence 5899998664332 3569999999999999999998875310 145667777765543211 13
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.++|.|.+. .++|||+|+|++|+++||.+|+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 456655442 689999999999999999999863
No 62
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.60 E-value=7.7e-15 Score=136.23 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=73.2
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEEEccCCC
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fvit~~~~ 98 (668)
.|+|||+ |+|+..+.|++|||||.++.|+||+++.+.. +.+.|.|..+..... ...++++|.|.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789766 7777789999999999999999999887655 455677776443222 223556665543221
Q ss_pred ------------------CCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 99 ------------------~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
..++|+|+|+|.+|+.+|+.+|+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2378999999999999999999999975543
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.59 E-value=7.4e-15 Score=130.50 Aligned_cols=90 Identities=27% Similarity=0.492 Sum_probs=66.9
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee---------cCCce
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---------~~kk~ 89 (668)
.+|||+ |+|...+.|++|||||++ +.|+||+++.+.. +.+.|+|..++.+... ..+.+
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTA---------EKGCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCc---------cceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 379665 888889999999999994 5999999987765 3445666665443321 12334
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
+|.+.. ..|+|+|+|++++++.+|+.+|+.+|
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 555433 37999999999999999999999864
No 64
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.58 E-value=1e-14 Score=128.08 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=68.5
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCc
Q 005939 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (668)
Q Consensus 22 eGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr 101 (668)
+|||+ |+|...++|++|||||+++.|+||+++.+..+ .+.|.|+|..+..+.. ..++..|.|... .++
T Consensus 2 ~G~L~--K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~-------~~~G~I~L~~~~i~~~-~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NGVLS--KWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH-------GCRGSIFLKKAIIAAH-EFDENRFDISVN--ENV 69 (91)
T ss_pred ceEEE--EeccccCCCceEEEEEECCEEEEEecCccCcC-------CCcEEEECcccEEEcC-CCCCCEEEEEeC--CCe
Confidence 69554 88889999999999999999999999876432 1456688887654433 334456666432 259
Q ss_pred eEEEEecChHHHHHHHHHHHH
Q 005939 102 AFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 102 ~y~fqAeS~eE~~eWi~AL~~ 122 (668)
+|+|.|++++|+++||.||++
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999985
No 65
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.57 E-value=1.2e-14 Score=144.27 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCCcCCe---eecCCCHHHHHHHHH-HHhcCC--ccC-------CCCCCcchhhhhHHHHhhhCCCC
Q 005939 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (668)
Q Consensus 182 ~vl~~~i~~L~~~Gl~~EGI---FR~sG~~~~v~~L~~-~ld~g~--~~~-------~~~~d~h~vA~lLK~fLReLPeP 248 (668)
.+|..|.+.|+.+|+++++| ||..++...++.+.. .|+.+. ... ....|||+++++||.|||.||++
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999 999999999999855 455442 111 23479999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCC
Q 005939 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (668)
Q Consensus 249 Llp~-~l~~~~i~~~~~~~~~~ri~~l~~lI~~~L-P~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~ 326 (668)
+|+. +.|..|...-+..+ .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..||+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998643322 12337777664333 78899999999999999999999999999999999999999887
Q ss_pred C
Q 005939 327 L 327 (668)
Q Consensus 327 ~ 327 (668)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 66
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=1.9e-14 Score=129.15 Aligned_cols=89 Identities=31% Similarity=0.552 Sum_probs=65.0
Q ss_pred EEeeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEeCCC-CCCCCCCccceeeeCcEEcCCCceeeeec---CCc
Q 005939 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (668)
Q Consensus 21 KeGyL~l~Kkg-------~~~k~WKKRWFVL~-~~~L~YYKd~~-~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk 88 (668)
++|||++.--| ..+++||||||||+ ++.|+||+++. +.. +.|.|+|+.|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 57988765333 24799999999998 57788887663 434 45678888877765432 223
Q ss_pred eEEEE-ccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 89 LLTVL-FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 89 ~~fvi-t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
++|.| ++ .|+|||.|+|++|+++|+.+|..
T Consensus 72 ~~f~I~tp----~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTP----DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECC----CceEEEEeCCHHHHHHHHHHHHh
Confidence 45544 44 79999999999999999999963
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.54 E-value=2.6e-14 Score=127.79 Aligned_cols=92 Identities=29% Similarity=0.413 Sum_probs=68.4
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC--Cce
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKL 89 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~ 89 (668)
.|+|+|||. |. +.|+||||||+++ .|.||++++.....+ ..+.+.|.|..|..+....+ +++
T Consensus 1 ~v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCe
Confidence 378999666 43 7899999999987 799999987522111 11677899999887654322 235
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
+|.|.. + .++|+|.|+|++|+++|+.+|..
T Consensus 71 ~f~i~t--~-dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT--R-DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe--C-CceEEEEeCCHHHHHHHHHHHhh
Confidence 665543 2 58999999999999999999964
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.53 E-value=4.8e-14 Score=126.44 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=68.8
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~ 97 (668)
|+|+|||. |+|...+.|++|||+|+ ++.|+||++++.....+ ..+++++.+..|........+.+.|.|....
T Consensus 1 v~k~G~L~--K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~----~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWLH--KRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPF----LPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEEE--eecCCCCCCeeEEEEEeCCCeEEEEecCCCccCcc----ccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999554 88888999999999999 78899998876433221 3367777777755433344455566665211
Q ss_pred ---CCCceEEEEecChHHHHHHHHHHHHH
Q 005939 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 98 ---~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.-.| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1134 55799999999999999876
No 69
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.48 E-value=1.5e-13 Score=124.43 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=63.0
Q ss_pred EeeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-----ec
Q 005939 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (668)
Q Consensus 22 eGyL~l~Kkg~----~~k~WKKRWFVL~~~~-------L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~ 85 (668)
+|||. |++. ..++|++|||||+++. |+||+++.+.. +.+.|+|..+..+.. ..
T Consensus 2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 69665 5555 3469999999999876 59999987765 455677777544322 11
Q ss_pred --CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 86 --~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
...+.|.+.. ..|+|+|.|+|++|+++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1123454432 2799999999999999999999864
No 70
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.48 E-value=1.9e-13 Score=118.41 Aligned_cols=91 Identities=27% Similarity=0.409 Sum_probs=66.1
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCC
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~g 100 (668)
++|||+ |++...+.|++|||+|+++.|+||+++.... ..+.+.|.|..+.. .....+.++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~-------~~~~~~i~l~~~~~-~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR-------GKPRGTILLSGAVI-SEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCC-------CCceEEEEeceEEE-EECCCCCcEEEEEc--CCC
Confidence 479666 6666679999999999999999999987641 01445566666432 22233345565542 346
Q ss_pred ceEEEEecChHHHHHHHHHHHHH
Q 005939 101 RAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~a 123 (668)
++|+|+|+|.+|+.+|+.+|+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 71
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.46 E-value=2.4e-13 Score=118.44 Aligned_cols=90 Identities=21% Similarity=0.420 Sum_probs=62.9
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC--CceEEEEccCC
Q 005939 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDG 97 (668)
Q Consensus 21 KeGyL~l~Kkg~~-~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~fvit~~~ 97 (668)
|+|||++ ++.. .+.|++|||+|+++.|+||+++...... +.+.|.+..+........ ++++|.|...
T Consensus 1 k~G~L~k--k~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~-------~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~- 70 (94)
T cd01250 1 KQGYLYK--RSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNA-------HVKEIDLRRCTVRHNGKQPDRRFCFEVISP- 70 (94)
T ss_pred CcceEEE--ECCCcCCCceEEEEEEeCCeEEEEcCCcccccc-------cceEEeccceEEecCccccCCceEEEEEcC-
Confidence 5897774 4432 7889999999999999999988753111 223355554332222222 4566766542
Q ss_pred CCCceEEEEecChHHHHHHHHHHHH
Q 005939 98 RDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 98 ~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.++|+|+|+|.+++++|+.||++
T Consensus 71 --~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 --TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred --CcEEEEECCCHHHHHHHHHHHhc
Confidence 49999999999999999999975
No 72
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=5.7e-13 Score=122.82 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=69.6
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee------ecCCceEEEE
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~------~~~kk~~fvi 93 (668)
.-.|||.+....++.++|++|||||+|+.|+||+.+.+.. . ..+++.|+|..|..... ...+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~-----~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-R-----KGPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-c-----CCceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 3569998765556789999999999999999999887732 1 12678888888766433 2334455555
Q ss_pred ccCCCC----------------Cc-eEEEEecChHHHHHHHHHHHHH
Q 005939 94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 94 t~~~~~----------------gr-~y~fqAeS~eE~~eWi~AL~~a 123 (668)
...... .+ -|+|.|+|.+|+++|+.||+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 321111 12 2679999999999999999753
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=1.1e-12 Score=116.65 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC----CceEE-EEccCCCCCceEEEEec
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT-VLFPDGRDGRAFTLKAE 108 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~----kk~~f-vit~~~~~gr~y~fqAe 108 (668)
.++||+|||+|+++.|+||+++.. . +.+.|+|..+..+..... ..++| ++++ .++|||+|+
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~----~r~~yi~a~ 83 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE----DDTMQLQFE 83 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEeC----CCeEEEECC
Confidence 578999999999999999997652 2 566788877665533221 22344 4454 689999999
Q ss_pred ChHHHHHHHHHHHHH
Q 005939 109 TSEDLYEWKTALELA 123 (668)
Q Consensus 109 S~eE~~eWi~AL~~a 123 (668)
|+.|+++||.||+++
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 74
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=1.2e-12 Score=116.30 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=65.7
Q ss_pred EeeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec---CCceEEEE
Q 005939 22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVL 93 (668)
Q Consensus 22 eGyL~l~Kkg~~-~k~WKKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~fvi 93 (668)
-|||. |+|+. .+.||+|||+|.+ +.|+||++..++. +++.|++..+....+.+ .+.+||.+
T Consensus 2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~~V~~v~ds~~~r~~cFel 70 (98)
T cd01245 2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDAYLYPVHDSLFGRPNCFQI 70 (98)
T ss_pred CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeeccccEEEEccccccCCCeEEEE
Confidence 58655 77766 8999999999987 9999999998876 55567777763222212 45688877
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.... .+.+|+++|++ +|+++||++|+.
T Consensus 71 ~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 5421 12689999999 999999999975
No 75
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.38 E-value=5.4e-12 Score=110.10 Aligned_cols=96 Identities=25% Similarity=0.451 Sum_probs=69.3
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-------cCCceEE
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLT 91 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~~f 91 (668)
++++|||+++. ...+.|++|||||.++.|+||+++.... ... +.+.|.|..+...... ....++|
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f 72 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSK-----PKGSIPLDDCTVRPDPSSDFLSNKKRKNCF 72 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTTT-ESS-----ESEEEEGTTEEEEEETSSTSTSTSSSSSEE
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCcccc-cee-----eeEEEEecCceEEEcCccccccccCCCcEE
Confidence 68999887544 5678999999999999999999987411 111 3445666655332221 1344667
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.+... .+..|+|+|+|++++..|+.+|+.++
T Consensus 73 ~i~~~--~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 73 EITTP--NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEET--TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 66542 24699999999999999999999986
No 76
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=8.3e-12 Score=114.51 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=68.2
Q ss_pred EEeeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 21 KeGyL~l~-------Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
|+|+|..+ |+. .+.+.|+++||||+|+.|++||++....... ...-....|.|..+........++..++
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~--~~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSL--SETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCccccccc--ccccccceEEeccceeEeeccccCCCcE
Confidence 78888754 111 1257899999999999999999996422110 0000123466666553222233332333
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
|.....+++.|+|||.+.+||+.|+.+|+.+.+
T Consensus 80 F~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 333346789999999999999999999999875
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.2e-11 Score=110.98 Aligned_cols=94 Identities=29% Similarity=0.413 Sum_probs=62.1
Q ss_pred Eeeeeee------ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee--cCCceEEEE
Q 005939 22 SGPLFIS------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVL 93 (668)
Q Consensus 22 eGyL~l~------Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~fvi 93 (668)
+|+|..+ .+....+.|++|||||+++.|+||+++..........+ .|++..+...... ..++++|.+
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l 76 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL 76 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence 5777643 12234789999999999999999998864321111111 2444432222221 234466666
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.. .++++|+|+|++++++..|+.+|+.
T Consensus 77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 77 RL--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 43 4589999999999999999999975
No 78
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.26 E-value=8.7e-12 Score=132.39 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=148.3
Q ss_pred CcccccchHHHhhh-----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC---------------
Q 005939 163 SLVVGRPILLALED-----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--------------- 222 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-----~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~--------------- 222 (668)
.++-|.++...+.. ....|.++...+.+.+.+|+.++||+|.++.....++++..-..|+
T Consensus 49 ~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k 128 (514)
T KOG4370|consen 49 KRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIK 128 (514)
T ss_pred ChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHH
Confidence 34555555443321 2346899999999999999999999999888766555544332221
Q ss_pred --------------------------ccCCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH
Q 005939 223 --------------------------TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS 276 (668)
Q Consensus 223 --------------------------~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~ 276 (668)
.....++.|.+||+|||.|||+||+||++.++...|..++.......+.+.++.
T Consensus 129 ~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ 208 (514)
T KOG4370|consen 129 RFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQF 208 (514)
T ss_pred HhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 001124578899999999999999999999999999999988887888999998
Q ss_pred HHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHH
Q 005939 277 AILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANN 356 (668)
Q Consensus 277 lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~ 356 (668)
++ ..||.+||.++.+|+-|+-.|....-.|||++.||+|+..|++--+
T Consensus 209 ll-k~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s------------------------------- 256 (514)
T KOG4370|consen 209 LL-KILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES------------------------------- 256 (514)
T ss_pred HH-HhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH-------------------------------
Confidence 66 6999999999999999999999989999999999999999887532
Q ss_pred HHHHHHHHHHhccccCCCCCccccC
Q 005939 357 AQAIIATLLEEYENIFDDESLHRCS 381 (668)
Q Consensus 357 ~~~iVe~LIen~~~IF~~~~~~~~~ 381 (668)
..++..|..|+..||++..+..|.
T Consensus 257 -~r~l~al~~h~q~lf~~v~l~~~~ 280 (514)
T KOG4370|consen 257 -KRGLQALGLHLQTLFEMVRLMVCF 280 (514)
T ss_pred -HHHHHHHHHHHHHHHhhheeeeee
Confidence 356778888999999988765553
No 79
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.25 E-value=2.4e-11 Score=110.89 Aligned_cols=97 Identities=31% Similarity=0.529 Sum_probs=49.9
Q ss_pred EEeeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEeCCCCCCCCC----CccceeeeCcEEcCC----Cceee-----eec
Q 005939 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR----GGEVNLTLGGIDLNN----SGSVV-----VRE 85 (668)
Q Consensus 21 KeGyL~l~Kkg~~-~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~----~~e~~l~L~~I~L~~----~~sv~-----~~~ 85 (668)
|+|||+ |++.. .++||+|||+|. ++.|.|||.+.+..... .....+..+.+.... ...+. ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689777 77765 899999999999 99999999933321000 000000001111111 00000 001
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
..+.+.++++ .++|+|.|++.+|+.+|+.||+.|
T Consensus 79 ~~~~~~i~T~----~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP----TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S----S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC----CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1223334454 699999999999999999999875
No 80
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.9e-11 Score=123.82 Aligned_cols=102 Identities=27% Similarity=0.494 Sum_probs=71.8
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEc-cCCC
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGR 98 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit-~~~~ 98 (668)
.++|||++. .|...++||+|||+|+.++||||..-.+..|+|.. +|..+.+..+ ....+.+||.+. +...
T Consensus 261 dREGWLlKl-gg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGII----pLeNlsir~V----edP~kP~cfEly~ps~~ 331 (395)
T KOG0930|consen 261 DREGWLLKL-GGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGII----PLENLSIREV----EDPKKPNCFELYIPSNK 331 (395)
T ss_pred cccceeeee-cCCcccchhheeEEeecceeeeeeeccCCCCCcce----eccccceeec----cCCCCCCeEEEecCCCC
Confidence 478977744 23368999999999999999999988887765532 3333333221 123456777653 3221
Q ss_pred -----------CC-------ceEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005939 99 -----------DG-------RAFTLKAETSEDLYEWKTALELALAQAPSA 130 (668)
Q Consensus 99 -----------~g-------r~y~fqAeS~eE~~eWi~AL~~ai~~ap~~ 130 (668)
+| .+|-++|.+.+|+.+||++|+.+|+..|-.
T Consensus 332 gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 332 GQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred cCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 22 269999999999999999999999866643
No 81
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.17 E-value=3.5e-11 Score=138.07 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=130.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeee-cCCCHHHHHHHHHHHhcCCccC--CCCCCcchhhhhHHHHhhhCCCC-CCChhh
Q 005939 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (668)
Q Consensus 179 ~VP~vl~~~i~~L~~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPeP-Llp~~l 254 (668)
.||.++..|+.+++.+|+..+|||| +++....|..++.++.+|.... ..+.+... |.++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4899999999999999999999999 9999999999999999983221 23334455 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCC
Q 005939 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (668)
Q Consensus 255 ~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~ 326 (668)
|..|+.+....+.-.++..++.++. .+|..+..++.+|+.|+.+.++.+..|.|++.|+|+||||+++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 9999999888777777788888774 8999999999999999999999999999999999999999997654
No 82
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.14 E-value=2.1e-10 Score=102.48 Aligned_cols=91 Identities=22% Similarity=0.396 Sum_probs=64.3
Q ss_pred ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEE-ccCCCCCceEEEEe
Q 005939 29 SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDGRDGRAFTLKA 107 (668)
Q Consensus 29 Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvi-t~~~~~gr~y~fqA 107 (668)
-+...+++||+|||+|+++.|+|||++.+.. +.+.+.+.+.++.+.....+ ..+++.+.+ +|...+.++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3445588999999999999999999987643 44444445555555442211 234555544 44344458999999
Q ss_pred cChHHHHHHHHHHHHHH
Q 005939 108 ETSEDLYEWKTALELAL 124 (668)
Q Consensus 108 eS~eE~~eWi~AL~~ai 124 (668)
+|++++.+||.|++.|-
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 83
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.13 E-value=3.8e-10 Score=98.21 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=61.0
Q ss_pred eeeeeeecCCCCCCcEEEEEEE--eCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCC
Q 005939 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (668)
Q Consensus 23 GyL~l~Kkg~~~k~WKKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~g 100 (668)
|||.+++ +...++|++|||+| ..+.|.||+++.+.. .-|.|+|..+.. .... +...+.|.. +.
T Consensus 1 G~llKkr-r~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~i-s~~~-~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLKKR-RKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAVI-SANK-KSRRIDIDS---GD 65 (89)
T ss_pred Ccceeec-cccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceEE-EecC-CCCEEEEEc---CC
Confidence 7666433 33589999999999 889999999886643 334566665422 2222 333344322 36
Q ss_pred ceEEEEecChHHHHHHHHHHHHH
Q 005939 101 RAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.+|+|.|.++++.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 84
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.13 E-value=2.7e-10 Score=105.34 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=57.0
Q ss_pred CcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee--------------cCCceEEEEccCCCCCc
Q 005939 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (668)
Q Consensus 36 ~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--------------~~kk~~fvit~~~~~gr 101 (668)
.|++|||+|++..|.||+++.++. +++.|.++....+... ..+++.|.|.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 699999999999999999988755 4555555544333221 23445565543 279
Q ss_pred eEEEEecChHHHHHHHHHHHHH
Q 005939 102 AFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 102 ~y~fqAeS~eE~~eWi~AL~~a 123 (668)
+|.|.|+|+.++.+|+.+|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 85
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.11 E-value=5.4e-11 Score=103.73 Aligned_cols=54 Identities=61% Similarity=0.785 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc-ccCcccCCC
Q 005939 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSK 667 (668)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 667 (668)
|||+++|++|.+|||||.+||+|||.|+++|.|||.||+.+.|.+ ++|..|+.|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~ 55 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKK 55 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChH
Confidence 589999999999999999999999999999999999999988887 667777654
No 86
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.11 E-value=5.7e-10 Score=99.92 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=68.4
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEEEccCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fvit~~~ 97 (668)
.+|+|+| .|.+...+.|+.|||+|-++.|.|++...... +.. -...+.|.+........ ....++.|.|...
T Consensus 2 ~ikeG~L--~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~---~~~-y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEGSV--LKISSTTEKTEERYLFLFNDLLLYCVPRKMIG---GSK-FKVRARIDVSGMQVCEGDNLERPHSFLVSGK- 74 (101)
T ss_pred cccceEE--EEEecCCCCceeEEEEEeCCEEEEEEcccccC---CCc-EEEEEEEecccEEEEeCCCCCcCceEEEecC-
Confidence 5799944 57777778999999999999999998543211 111 11334466665433222 1234566776542
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 98 ~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.++|+|+|+|++|+.+||.+|+.+|.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999985
No 87
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.09 E-value=2.8e-10 Score=104.97 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=59.6
Q ss_pred EEEeeeeee------ecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCC-----CccceeeeCcEEcCCCceeeeec-
Q 005939 20 FKSGPLFIS------SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVRE- 85 (668)
Q Consensus 20 ~KeGyL~l~------Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~-----~~e~~l~L~~I~L~~~~sv~~~~- 85 (668)
.|+|||+.+ .+.. ..++|+..|+||+|+.|++||+........ ..+..-+...|.|..+......+
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 489988854 1122 468899999999999999999953211111 11112234557777765543333
Q ss_pred -CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 86 -DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 86 -~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.++++|.+. +.+|..|+|||.+.++|.+||.+|+.+.
T Consensus 81 ~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 344566554 4579999999999999999999998764
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.04 E-value=2.5e-09 Score=91.61 Aligned_cols=97 Identities=33% Similarity=0.510 Sum_probs=69.0
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec----CCceEEEEc
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~kk~~fvit 94 (668)
++++|||+....+ ....|++|||+|.++.|.||++...... ......|.|..+....... ...++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~------~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD------YKPKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc------CCCceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689988755443 4678999999999999999998865321 1134456666653322222 245667665
Q ss_pred cCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 95 ~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.. ++..|+|+|+|..++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 43 23699999999999999999999875
No 89
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.86 E-value=1.1e-08 Score=89.24 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=71.9
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEc-cCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDG 97 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit-~~~ 97 (668)
|++.|||-+..-+....+=|.|||||+..+|+|||+..+..+++. ++|.++.+.....- -..++++|.+. +..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyi----lpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYM----LPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccce----eeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 578898887766665556799999999999999999988775543 35666555543221 13456777664 332
Q ss_pred C----CCceEEEEecChHHHHHHHHHHHHH
Q 005939 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 98 ~----~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
+ +.++.-|+|+|.++++.|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 2 2468899999999999999887654
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.83 E-value=1.7e-08 Score=85.61 Aligned_cols=93 Identities=31% Similarity=0.537 Sum_probs=63.9
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC--CceEEEEccCCC
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~fvit~~~~ 98 (668)
++|||+....+. ...|++|||+|.++.|.+|+....... ..+.+.|.|..+........ ..++|.+...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~~------~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKKS------YKPKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCcC------CCCcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468776443332 478999999999999999988765310 01334466666333222222 3567777653
Q ss_pred CCceEEEEecChHHHHHHHHHHHH
Q 005939 99 DGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 99 ~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 249999999999999999999975
No 91
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.81 E-value=4.6e-09 Score=109.67 Aligned_cols=108 Identities=18% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeC-CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~-~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
.....|+|+|||+ |+|...++|+.|||+|.. +.|.-|+.++....+. ..+|..+.+..|........+...|+
T Consensus 10 ~~~~~vvkEgWlh--KrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEGWLH--KRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhhhHh--hcchhhhcccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEE
Confidence 4567799999554 999999999999999975 8899898876543222 13788888888877666666777777
Q ss_pred Ec-cCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 93 LF-PDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 93 it-~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|. ..+..--...|.+++++++++|+.||+.+.+..
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 63 334344567899999999999999999887543
No 92
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.78 E-value=5e-08 Score=83.28 Aligned_cols=93 Identities=29% Similarity=0.482 Sum_probs=62.7
Q ss_pred EeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec---CCceEEEEccC
Q 005939 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVLFPD 96 (668)
Q Consensus 22 eGyL~l~Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~fvit~~ 96 (668)
+|||.+..... ....|++|||+|.++.|+||+.+....... ..+.+.... +.... ...++|.+...
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~l~~~~-v~~~~~~~~~~~~F~i~~~ 72 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP--------GSIPLSEIS-VEEDPDGSDDPNCFAIVTK 72 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC--------CEEEccceE-EEECCCCCCCCceEEEECC
Confidence 57665443332 257899999999999999999887654221 223343333 22222 24566766543
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
....+.|+|+|+|.+++..|+.+|+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 73 DRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 213789999999999999999999863
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.67 E-value=2e-08 Score=88.41 Aligned_cols=97 Identities=19% Similarity=0.365 Sum_probs=66.8
Q ss_pred EEEeeeeeeecCC-CCCCcEEEEEEEeCC-----eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-------ecC
Q 005939 20 FKSGPLFISSKGI-GWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (668)
Q Consensus 20 ~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~-----~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-------~~~ 86 (668)
.++|||+ +.|+ .++.||||||+|.+- .+.-|+.++. . +.-.+.|.|..++-+..... -..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-~----P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-E----PTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-C----chhheeecceEEeccCCCCCCccccccccc
Confidence 4899777 6665 699999999999974 3344544332 2 23345678877777644321 113
Q ss_pred CceEE-EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~f-vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++|| .+.. |....|..+++.|+.-|++||=+|..++
T Consensus 76 g~~ff~avke----gd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAVKE----GDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhheecc----CcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 34444 4433 7899999999999999999999987655
No 94
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.67 E-value=1.3e-07 Score=84.45 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=61.8
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCC-eEE---EEeCCCCCCCCCCccceeeeCcEEcCCCce-eeeecCCceEEEEcc
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRT-SLV---FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~-~L~---YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s-v~~~~~kk~~fvit~ 95 (668)
|+||||++.+++....|.++||.+.+. .++ -+..... .+.++. +. ....|.|..|.. .....+++|||.|+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~-~~~~g~-v~-~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTK-TDMKGA-VA-QDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccc-cccCcc-cc-cceEEeeeeccccccCCccceeeEeeee
Confidence 589999998887777999999999874 221 2222110 011111 00 111244444433 223457889998865
Q ss_pred CCCCCceEEEEecChHHHHHHHHHHH
Q 005939 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (668)
Q Consensus 96 ~~~~gr~y~fqAeS~eE~~eWi~AL~ 121 (668)
.... .+++|||+++.++..||.|+.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 4333 579999999999999999985
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.66 E-value=1.8e-08 Score=112.71 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=140.5
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHH----HHHHH-hcCCccCCCCCCcch
Q 005939 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR----RVQEY-EQGKTEFSADEDAHV 233 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~----L~~~l-d~g~~~~~~~~d~h~ 233 (668)
...+...||+||...+.+.+.+|..+......|...+..++++||..-...-+-+ ....+ ..|.....+...+|+
T Consensus 410 ~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~t 489 (741)
T KOG4724|consen 410 SELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHT 489 (741)
T ss_pred hhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchH
Confidence 3345678999999999999999999988888899999999999998544333322 22222 336666667779999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHccCChhHHHHHHHHHHHHHHhhccccc
Q 005939 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHE 306 (668)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~-------lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~ 306 (668)
++.++|.|+|.+|..++..+++.+++++.....++++.++|+. ......|..+..+..+.+.-.+.+..++..
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 9999999999999999999999999999998888899999997 123688999998899888888889999999
Q ss_pred CCCCccchhhhhcccccCCC
Q 005939 307 NRMTPSAVAACMAPLLLRPL 326 (668)
Q Consensus 307 NkMt~~NLAivfgP~Llr~~ 326 (668)
+.|+..|++.|..|+++...
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999998654
No 96
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.66 E-value=8.5e-09 Score=118.45 Aligned_cols=96 Identities=25% Similarity=0.445 Sum_probs=75.3
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee----cCCc
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKK 88 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~----~~kk 88 (668)
+..+.+.+|||| |+|...|.||.|||||.. +.|+||.+-.++. +.|+|+|....++... .+.+
T Consensus 1630 ~teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~---------pkG~IdLaevesv~~~~~k~vdek 1698 (1732)
T KOG1090|consen 1630 PTENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTK---------PKGCIDLAEVESVALIGPKTVDEK 1698 (1732)
T ss_pred cccccCcccchh--hcchhhcccccceeEecCCccceeeeccccccc---------ccchhhhhhhhhhcccCccccCcc
Confidence 344566699888 999999999999999986 7999999988877 4456777776665441 2344
Q ss_pred eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
-||.+... .|+|-|+|.+....++|+..|+.++
T Consensus 1699 gffdlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1699 GFFDLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ceeeeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 45555432 7999999999999999999999876
No 97
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.62 E-value=3.8e-07 Score=81.53 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--CCceEEEEccC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPD 96 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~fvit~~ 96 (668)
.+|+|+|.+ .+. ...|+|+||.+.+..||+.+..... ... ...+.|.|.......... ..+++|.|...
T Consensus 2 ~ikEG~L~K--~~~-k~~~~R~~FLFnD~LlY~~~~~~~~-----~~y-~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~ 72 (99)
T cd01220 2 FIRQGCLLK--LSK-KGLQQRMFFLFSDLLLYTSKSPTDQ-----NSF-RILGHLPLRGMLTEESEHEWGVPHCFTIFGG 72 (99)
T ss_pred eeeEEEEEE--EeC-CCCceEEEEEccceEEEEEeecCCC-----ceE-EEEEEEEcCceEEeeccCCcCCceeEEEEcC
Confidence 589997764 332 2467766666666555555432211 111 133445555543322222 33567777632
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.+.|.|+|.|++|+.+|+.+|+.+|.
T Consensus 73 ---~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 ---QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999985
No 98
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.53 E-value=2.1e-07 Score=83.60 Aligned_cols=95 Identities=25% Similarity=0.388 Sum_probs=61.3
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCc-EEcCCCceee-------eecCCceEEE
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSVV-------VREDKKLLTV 92 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~-I~L~~~~sv~-------~~~~kk~~fv 92 (668)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+. .|-. +.+.+..... ......++|.
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~sr-------dL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~ 72 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTR-------DLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG 72 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHH-------HHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence 37999976655 5899999999999999998544333221 1111 2222221111 1123347888
Q ss_pred EccCCCC----CceEEEEecChHHHHHHHHHHHHHH
Q 005939 93 LFPDGRD----GRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 93 it~~~~~----gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
+.+.... .-..+|||+++..+..|+.||+-+-
T Consensus 73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred EeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 8653221 2468999999999999999998654
No 99
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.48 E-value=1.5e-06 Score=79.14 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=70.9
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCC--Cccceeee--CcEEcCCCce--eee--ecCCceEE
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTL--GGIDLNNSGS--VVV--REDKKLLT 91 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~--~~e~~l~L--~~I~L~~~~s--v~~--~~~kk~~f 91 (668)
.-+|||.+.+.++..++|+++|+||.+..|++|..+.+...+. .....+++ +.+.+..++. +.. ..+-.++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 3589888888877778999999999999999998777543332 22233344 2344443322 111 12334666
Q ss_pred EEcc----CCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 92 vit~----~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.|+. .+..+.+.||-|++..|.++|+.+|+..
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 6643 2334689999999999999999999865
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.33 E-value=5.4e-06 Score=74.49 Aligned_cols=103 Identities=13% Similarity=0.274 Sum_probs=68.0
Q ss_pred EEeeeeeeecCCC--CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeC-cEEcCCCce--eee--ecCCceEEEE
Q 005939 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VVV--REDKKLLTVL 93 (668)
Q Consensus 21 KeGyL~l~Kkg~~--~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~-~I~L~~~~s--v~~--~~~kk~~fvi 93 (668)
.+|||-+.+.++. .++|+++|+||.+..|++|..+.+...+. +...+.++ .+.+..++. +.. ..+-+++|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 4797777666554 46999999999999999998877643222 22222322 233233222 111 1233466766
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+.. ...++.+|-|+++.|.+.|+.+|.+-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 653 3359999999999999999999988763
No 101
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.31 E-value=7.3e-07 Score=103.16 Aligned_cols=104 Identities=26% Similarity=0.459 Sum_probs=77.8
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-------CCc
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------DKK 88 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-------~kk 88 (668)
...|.--|||++-.-+.++..|.||||+|.|+.+.|+|.+.+...+. +++.|+|+.|++-.... ..+
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCc
Confidence 34466779999887777788999999999999999999998876332 78899999998843321 223
Q ss_pred eEEEEc--c--CCC-----CCc-eEEEEecChHHHHHHHHHHHHHHh
Q 005939 89 LLTVLF--P--DGR-----DGR-AFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 89 ~~fvit--~--~~~-----~gr-~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.|++.+ | .+. -.| ...|.|+|.++++.|+.+|..++.
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 444441 1 111 113 688999999999999999999875
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.31 E-value=5.2e-06 Score=74.72 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=60.9
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC-eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvi 93 (668)
++..++++|+|. |+++.. +++|||+|+++ .|+|+..... . ..|.|.++....+... +.+.|++.
T Consensus 9 ~ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~-~---------~KGeI~~~~~l~v~~k-~~~~F~I~ 73 (104)
T PF14593_consen 9 PGELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKM-V---------LKGEIPWSKELSVEVK-SFKTFFIH 73 (104)
T ss_dssp -T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTT-E---------EEEEE--STT-EEEEC-SSSEEEEE
T ss_pred CCCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCC-e---------ECcEEecCCceEEEEc-cCCEEEEE
Confidence 378899999776 433323 99999999987 7777754332 1 3466888877666553 34466788
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
++ +|+|+|.. .......|+++|+.++.+
T Consensus 74 tp----~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 74 TP----KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp ET----TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CC----CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 87 89999988 455688899999998763
No 103
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.27 E-value=5.7e-06 Score=91.29 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHHhcCCCcCCee---ecCCCHHHHHHHHHHH-hcCCcc----------CCCCCCcchhhhhHHHHhhhCC
Q 005939 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (668)
Q Consensus 181 P~vl~~~i~~L~~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~----------~~~~~d~h~vA~lLK~fLReLP 246 (668)
=.+|..|...|..+|+++++|| |..-+...++.+...| ..+... .....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478889999999999999998 7777888888877755 333211 1234699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCC-hhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCC
Q 005939 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (668)
Q Consensus 247 ePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP-~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~ 325 (668)
..+|+.+.|..|...-+..+ --..+...+|-..|| +.|..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|-.
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999987644332 224556665655674 667889999999999999999999999999999999999987
Q ss_pred CC
Q 005939 326 LL 327 (668)
Q Consensus 326 ~~ 327 (668)
..
T Consensus 167 ~~ 168 (420)
T PF08101_consen 167 PD 168 (420)
T ss_pred CC
Confidence 63
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.09 E-value=6.9e-06 Score=93.12 Aligned_cols=116 Identities=27% Similarity=0.384 Sum_probs=77.5
Q ss_pred CCCcEEEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-----cC
Q 005939 15 ASNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----ED 86 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-----~~ 86 (668)
....|.|+|.+..+-+|. +.+++|||||.|+...|.|.|++... +.+.|.|.+...|..- ..
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~ 630 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKM 630 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCC
Confidence 344455555444333332 24778999999999999999988653 3445666665554311 23
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcchhhccccccccCCCC
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTN 145 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a~~~g~~g~f~~~~~ 145 (668)
++.+.+|.. .|+.||||.+..|..+|+.+|+++..-+++. ...-|.|.|+.+.-
T Consensus 631 knv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~w 684 (800)
T KOG2059|consen 631 KNVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDSW 684 (800)
T ss_pred CceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCcc
Confidence 445566665 3899999999999999999999987533221 11346788887653
No 105
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=3.5e-06 Score=93.06 Aligned_cols=107 Identities=27% Similarity=0.345 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEEeeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee
Q 005939 11 PRPGASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV 82 (668)
Q Consensus 11 ~~~~~~~~V~KeGyL~l~-------Kk-g~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~ 82 (668)
..+.++..+.|.|+|-.+ || -.+.++||..|.+|+|-.|||-|++-.. +. .+..-+|.+..++.
T Consensus 498 v~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p---~k-----alse~~lknavsvH 569 (774)
T KOG0932|consen 498 VPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP---GK-----ALSESDLKNAVSVH 569 (774)
T ss_pred CCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc---cc-----chhhhhhhhhhhhh
Confidence 344567789999977643 22 2347889999999999999999865431 11 22222233322211
Q ss_pred ------eecCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 83 ------VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 83 ------~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
..+.+|..||+...+.+.|+|+|||.+.+||+.||..|.-+.+
T Consensus 570 HALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 570 HALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred hhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 1233444466666677899999999999999999999988764
No 106
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.82 E-value=3.2e-05 Score=85.22 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=62.6
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-----cCCceE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDKKLL 90 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-----~~kk~~ 90 (668)
.+...+.|+||++..| +|+|||.||||+...|||+-..+...++.-. .+..+.-.++...... ....++
T Consensus 314 ~~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq----~l~~~~~snVYt~i~~rKkyksPTd~~ 387 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQ----CLADLHSSNVYTGIGGRKKYKSPTDYG 387 (622)
T ss_pred CCCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhH----HHHhcccCceEEeecchhccCCCCCce
Confidence 3446688999966555 6999999999999999999655444333211 0111111111111111 112255
Q ss_pred EEEccCCCC---CceEEEEecChHHHHHHHHHHHHHH
Q 005939 91 TVLFPDGRD---GRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 91 fvit~~~~~---gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
|-|.+.... .-.-+|||+++.-+..|+.||+-+-
T Consensus 388 f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 388 FCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred EEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 666542221 2356899999999999999998654
No 107
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.76 E-value=0.00024 Score=64.15 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=60.0
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--C-CceEEEE
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--D-KKLLTVL 93 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~-kk~~fvi 93 (668)
...+++|-|. |.. ++..+.|||.|=.+.|+|=+--.. + .... ..+.++|..+......+ . ++.+.++
T Consensus 2 R~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~----~-~~~~-~~~~i~L~~~~v~~~~d~~~~~n~f~I~ 71 (104)
T cd01218 2 RVLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVIS----K-KKYN-KQHILPLEGVQVESIEDDGIERNGWIIK 71 (104)
T ss_pred CEEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecC----C-ceee-EeeEEEccceEEEecCCcccccceEEEe
Confidence 3578999665 332 456788999999999998532111 0 0000 11223444332222222 1 2333444
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
++ .+.|.++|+|++|..+|+.+|+.|+.+
T Consensus 72 ~~----~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 72 TP----TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred cC----CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 44 799999999999999999999999864
No 108
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.76 E-value=0.00012 Score=84.63 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=75.2
Q ss_pred CcEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC----CceEE
Q 005939 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT 91 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~----kk~~f 91 (668)
..+..+||||.-... .+..--++|||||.++.|.|||.++... .++++...++.++.|..... .+.++
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 457799999965443 3455579999999999999999876533 23666666777666543322 23455
Q ss_pred EEcc--CCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 92 VLFP--DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 92 vit~--~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
+++. .....+...|.|-|.+|..+|+.||+.|+.++
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 5543 22234678999999999999999999999875
No 109
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=0.00043 Score=63.24 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=63.6
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCC-CCCCccceeee-CcEEcCCCceeeeec--CCceEEE
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTL-GGIDLNNSGSVVVRE--DKKLLTV 92 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~-p~~~~e~~l~L-~~I~L~~~~sv~~~~--~kk~~fv 92 (668)
+..+++|-| .+-....+.++.|+|.|=++.|+|-|...... ..|.......+ ..+++.........+ .-+..|.
T Consensus 2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~ 79 (112)
T cd01261 2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFE 79 (112)
T ss_pred ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEE
Confidence 346789954 45444457789999999999999988544311 11100001111 123333322211111 1244565
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
|... +++.|.|+|.|+++..+||.+|..++.+
T Consensus 80 I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 80 IILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred EEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 5432 2678999999999999999999988753
No 110
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=0.00021 Score=64.70 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=60.9
Q ss_pred EeeeeeeecC--CCCCCcEEEEEEEeCCeEEEEeCCCCCCC-CCCccceeeeC--cEEcCCCcee-eeecCCceEEEEcc
Q 005939 22 SGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG--GIDLNNSGSV-VVREDKKLLTVLFP 95 (668)
Q Consensus 22 eGyL~l~Kkg--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p-~~~~e~~l~L~--~I~L~~~~sv-~~~~~kk~~fvit~ 95 (668)
-|||.-+-.+ ...+.|+.+|++|++..|++|+.++.... ...+..+-++. -..+...... .....+.+||.+..
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 3755533222 24689999999999999999998865331 11122222222 1111110100 00124557888765
Q ss_pred CCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 96 DGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 96 ~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.+. -..++|..++..|+..|..||.+
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 432 38999999999999999999964
No 111
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.56 E-value=0.00025 Score=64.34 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=60.2
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-------cCCceEEE
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLTV 92 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~~fv 92 (668)
+|+||+- --...-+.|||+|++|+...|.+|+++.... ..+.|.|.....|... ....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4789663 1111236899999999999999999988766 4445555554444321 23557887
Q ss_pred EccCCCCCceEEEEecC--------------------hHHHHHHHHHHHHH
Q 005939 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS--------------------~eE~~eWi~AL~~a 123 (668)
|.+. ..+||...+. ....+.|-.||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 7652 6888886642 33558898888764
No 112
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.51 E-value=0.0002 Score=81.12 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=62.1
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEE-eCCCCCCCCCCccceeeeCcEEcCCCceeee--ecCCceEEE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFF-KNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YY-Kd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~kk~~fv 92 (668)
.+.+.+.|||+ +.+... .|++|||.+.++.+... +..+........ ......+..+..+.. ...+.++|+
T Consensus 374 ~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 45678899666 555434 59999999998666554 322221111111 122223344433311 123456676
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+. ...++.++|.|++++++++||.+|+.++.
T Consensus 447 i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LW--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 63 34588999999999999999999999873
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.19 E-value=0.00018 Score=85.37 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=67.6
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccC
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~ 96 (668)
......|||+.+... ..+.|+||||-..++.+.|+..-..... .....+..+.+..+. ...++++||.|+.
T Consensus 272 ~~~~~~~~l~~k~~~-~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~---~~~drr~CF~iiS- 342 (785)
T KOG0521|consen 272 LGYRMEGYLRKKASN-ASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDA---EQRDRRFCFEIIS- 342 (785)
T ss_pred chhhhhhhhhhhccc-chhhHHhhhhhhhccccccccccccccc----cccccchhccccCCc---ccccceeeEEEec-
Confidence 335556666633323 4899999999999999999876554331 112233333333321 1236778886654
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
..++|.|||+++.+...||.+|++.+..+
T Consensus 343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 --PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 27999999999999999999999999754
No 114
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.00 E-value=0.0052 Score=53.65 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=57.6
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCC-CceeeeecCCceEEEEccCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~-~~sv~~~~~kk~~fvit~~~ 97 (668)
+++.|.++ |+.+. .+++|=++|++.--.||-|+.... ..|.|.++. +..+... ..+.|++.+|
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~-~~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVK-NSSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEe-cCccEEEECC--
Confidence 46778555 44432 679999999986444444544322 345577776 4344333 3356678887
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 98 ~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
+|+|+|. +-......|+.+|..+.
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 55678999999998763
No 115
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.99 E-value=0.00044 Score=78.37 Aligned_cols=96 Identities=17% Similarity=0.278 Sum_probs=65.5
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccC
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~ 96 (668)
....|+||+ .+-+...+.|+|||||++.+.+.||+.+.+...... +.+++...+........-.+..++.
T Consensus 247 e~~ekSgy~--~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~-------s~~d~~s~~~~~~~~~s~~fqli~~- 316 (936)
T KOG0248|consen 247 ETMEKSGYW--TQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPA-------SKIDIRSVTKLEQQGAAYAFQLITS- 316 (936)
T ss_pred chhhcccch--hcchHHHHHHHhHheeeccceEEEEEcCCCcccccc-------CcccccccceeeccchhHHhhhhhh-
Confidence 677899944 466666889999999999999999998877553222 2233333222111111112233332
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
...|+|-++++--..+|++.|+.+|.
T Consensus 317 ---t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ---TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ---ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 47899999999999999999999886
No 116
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.97 E-value=0.00038 Score=77.48 Aligned_cols=94 Identities=30% Similarity=0.459 Sum_probs=64.4
Q ss_pred EEEeeeeeee-cCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec----C---Cce
Q 005939 20 FKSGPLFISS-KGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----D---KKL 89 (668)
Q Consensus 20 ~KeGyL~l~K-kg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~---kk~ 89 (668)
+.+| .++. ||. ..+.|+.|||+|.|..|.|-|....... ....|++....+|.... + .|.
T Consensus 736 ~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKA 805 (851)
T KOG3723|consen 736 LIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKA 805 (851)
T ss_pred hhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchh
Confidence 5677 4443 332 3689999999999999999776544331 11346666655543111 1 123
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|-+++. ..+|.|.|.++...++|++.|+-|+++|
T Consensus 806 FEIFTA----D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 806 FEIFTA----DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hheeec----CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 344444 5789999999999999999999999765
No 117
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.52 E-value=0.00053 Score=76.88 Aligned_cols=101 Identities=23% Similarity=0.463 Sum_probs=66.5
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCe-----EEEEeCCCCCCCCCCccceeeeCcEEcCCCceee-eecCCceE
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLL 90 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~-----L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~-~~~~kk~~ 90 (668)
.+.-.+||||.-.+. .|+.||||||||-.-. ++-|+.++. .|+ --+.|.|+.++...... ....+.||
T Consensus 462 ~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekka-epq----el~qldgytvdytdp~pglqgg~~ff 535 (1218)
T KOG3543|consen 462 PNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-EPQ----ELIQLDGYTVDYTDPSPGLQGGKHFF 535 (1218)
T ss_pred CccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhccc-ChH----HHhhccCeeeccCCCCCccccchHHH
Confidence 345568999966555 3899999999998643 334443322 222 22356666665532211 11233444
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
..+.. |.+..|..+++.++.-|++|+-+|..++
T Consensus 536 navke----gdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 536 NAVKE----GDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred HHhcc----CceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 45544 8899999999999999999999998775
No 118
>PLN02866 phospholipase D
Probab=96.46 E-value=0.018 Score=69.68 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=55.5
Q ss_pred CCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcC--C------Cceeee--e----cCCceEEEEccCCCCC
Q 005939 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN--N------SGSVVV--R----EDKKLLTVLFPDGRDG 100 (668)
Q Consensus 35 k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~--~------~~sv~~--~----~~kk~~fvit~~~~~g 100 (668)
..|.||||||+.+.|.|.+++.+..+ +..+.++ . ...+.. . ..-++.|.|+. .+
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~---------~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~---~~ 283 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKP---------LDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC---GN 283 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCce---------eEEEEEecccccccCCCcceeecccccccCCCcceEEEec---Cc
Confidence 56999999999999999988776542 2222222 1 001100 0 11234565554 37
Q ss_pred ceEEEEecChHHHHHHHHHHHHHHhhCC
Q 005939 101 RAFTLKAETSEDLYEWKTALELALAQAP 128 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~ai~~ap 128 (668)
|.+.|.+.+...+..|+.+|+.+....|
T Consensus 284 r~l~l~~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 284 RSIRLRTKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999975444
No 119
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.39 E-value=0.0017 Score=79.07 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=123.5
Q ss_pred ccccchHHH-h--hhCCCCcHHHHH-HHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc---cC----CCCCCcch
Q 005939 165 VVGRPILLA-L--EDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (668)
Q Consensus 165 vFG~pL~~l-l--~~~~~VP~vl~~-~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~----~~~~d~h~ 233 (668)
++|+++..+ . .-....|.++.+ |.......|....|+||.++....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788888666 2 223457888888 7777778999999999999998888888888876421 11 11335667
Q ss_pred hhhhHHHHhhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHc----cCCh
Q 005939 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (668)
Q Consensus 234 vA~lLK~fLReL--PePLlp~~l~~~~i----------------~~~~~~~~~~ri-------~~l~~lI~~----~LP~ 284 (668)
+.+.++.|+|.+ |.+......|..|+ .........+++ ..+..+ .. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~-~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSEL-ARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHh-hccCCCCCCH
Confidence 777999999999 99988888888777 333444445555 566663 36 8999
Q ss_pred hHHHHHHHHHHHHHHhhcccccC-CCCc-cchhhhhcc----cccCCC
Q 005939 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (668)
Q Consensus 285 ~n~~lL~~Ll~~L~~Va~~s~~N-kMt~-~NLAivfgP----~Llr~~ 326 (668)
....+|.++..++.+|..+...| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999988888 8887 999999999 455443
No 120
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.35 E-value=0.0013 Score=76.20 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=61.3
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHH
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~ 113 (668)
-.+|.|-|.|.+.-+|+|||+..+..+ ..++++-|+.+...... ....|.+.|.+..+ ..+|+|.|++.--.
T Consensus 937 ssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~~-d~i~K~~vfkl~fk---~hvyffraes~yt~ 1008 (1036)
T KOG3531|consen 937 SSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAEP-DPIQKDYVFKLKFK---SHVYFFRAESYYTF 1008 (1036)
T ss_pred cccceeeeeeecceeeEeecccccccc----cccccccccccCCCCCC-CCcchhheeeeehh---hhHHHHhhhhhhhh
Confidence 358999999999999999999988763 33456666665553221 11234566666543 67899999999999
Q ss_pred HHHHHHHHHHH
Q 005939 114 YEWKTALELAL 124 (668)
Q Consensus 114 ~eWi~AL~~ai 124 (668)
++|+..|+.+-
T Consensus 1009 ~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 1009 ERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhcCC
Confidence 99999998764
No 121
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.33 E-value=0.044 Score=48.89 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~ 98 (668)
.+++|.|...+. =+-|++.|=...|.|-|....... -...|.++.-..........+.|.+.....
T Consensus 4 Llleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y~--------~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~ 69 (97)
T cd01222 4 LLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKYQ--------FKAYIPCKNLMLVEHLPGEPLCFRVIPFDD 69 (97)
T ss_pred eeeeceEEeecC------CCceEEEEecccEEEEEecCCeeE--------EEEEEEecceEEecCCCCCCcEEEEEecCC
Confidence 567886652222 235888888888888875443220 111233332211111122357777765433
Q ss_pred CCceEEEEecChHHHHHHHHHHHHHH
Q 005939 99 DGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 99 ~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
..+.|.|+|.|.++...|+++|+.++
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 34799999999999999999999886
No 122
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.31 E-value=0.0051 Score=55.30 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=62.3
Q ss_pred cEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee---eecCCceEEEE
Q 005939 18 TVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~---~~~~kk~~fvi 93 (668)
.++..||+. |-| .+...|++|||-|-.+.|-+|....... ++ .|.+.....|. ..-....|.++
T Consensus 2 DcIvhGyi~--KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~e------Li~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHGYIK--KLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PE------LITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEeeehh--hhCCHHHHHHHHHHheeCcceeeecccccccC----Cc------EEEeehhhhcchhheeeccCceEEE
Confidence 468889554 544 4578899999999999999974433311 11 12233322222 11122334555
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.. ++++.+++.+++..+..+|...|+.+-..
T Consensus 70 k~--k~~~k~vlt~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 70 KI--RDEKKIVLTNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred EE--cCCceEEEecCCcHHHHHHHHHHHHHHHH
Confidence 44 34788999999999999999999988753
No 123
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.27 E-value=0.012 Score=67.10 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=30.7
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.++.|.+.. ..|+.+.|+|.+.++++.||.+|++++.
T Consensus 454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 456665543 4599999999999999999999999985
No 124
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.25 E-value=0.0062 Score=67.11 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=66.9
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEcc
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~ 95 (668)
..-+...|+ +.|.-.....|.-|||+|+.+.|.||++..... .|+ -|.|.+..........+...|++.+-
T Consensus 21 dgw~e~~G~--lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hGc-----Rgsi~l~ka~i~ahEfDe~rfdIsvn 91 (611)
T KOG1739|consen 21 DGWVERCGV--LSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HGC-----RGSICLSKAVITAHEFDECRFDISVN 91 (611)
T ss_pred CCchhhcce--eeeeecccccccceEEEEcccchhhhhhhhhhh--ccc-----ceeeEeccCCcccccchhheeeeEec
Confidence 344555663 336555678999999999999999999987644 233 34455554333223344445555442
Q ss_pred CCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 96 ~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
..++++.|.+...++.|+.+|.-.-.
T Consensus 92 ----~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 ----DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred ----cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 57899999999999999999987654
No 125
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.24 E-value=0.059 Score=50.08 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=55.2
Q ss_pred eeeeeecCC---CCCCcEEEEEEEeC--CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-----cC----Cce
Q 005939 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----ED----KKL 89 (668)
Q Consensus 24 yL~l~Kkg~---~~k~WKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-----~~----kk~ 89 (668)
|||+-.+++ .....++|||-|.. .+|+|+..++....... ...+.+.|.....+... .. ..+
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~----~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~ 89 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSE----SKAKSIRIESVTEVKDGNPSPPGLKKPDHNK 89 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCcccccc----ccccceEEeeeEEecCCCCCCccccccccce
Confidence 666533322 24578999999997 57777765432221110 01122333332222111 11 223
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.++|.. .+|+.-|.|.+.++.+-|+.+|+..++
T Consensus 90 si~i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 90 SIIIVT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEEEEc---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 344432 279999999999999999999998764
No 126
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.21 E-value=0.0015 Score=56.08 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=56.3
Q ss_pred EeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee----e---cC-CceEEEE
Q 005939 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----R---ED-KKLLTVL 93 (668)
Q Consensus 22 eGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~----~---~~-kk~~fvi 93 (668)
+||||...++. -+|||.+|++..|.+|.++... .++.+.+.......+ . .. .-..|-|
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~----------~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQ----------YLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCc----------eeeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 59999887774 5889999999999999876542 233344433111000 0 11 1122222
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
-..+.+++..-+-|++.+.++.|++++.+
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 22345678888889999999999999864
No 127
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.99 E-value=0.26 Score=46.01 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=55.6
Q ss_pred EEEEeeeeeeecCC------CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCcccee----eeCcEEcCCCceeee-----
Q 005939 19 VFKSGPLFISSKGI------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV----- 83 (668)
Q Consensus 19 V~KeGyL~l~Kkg~------~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l----~L~~I~L~~~~sv~~----- 83 (668)
.+|.|.|.....++ ....-+.+|+.|=.+.|.|-|.+.. ..+.+ +...+.+..+.....
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~------~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLG------STFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCC------CeEEEEeeccccceEEeeccccccccccc
Confidence 46778665332221 1223567899999999999875432 22222 223344433221100
Q ss_pred --ecCCceEEEEcc-CCCCC--ceEEEEecChHHHHHHHHHHH
Q 005939 84 --REDKKLLTVLFP-DGRDG--RAFTLKAETSEDLYEWKTALE 121 (668)
Q Consensus 84 --~~~kk~~fvit~-~~~~g--r~y~fqAeS~eE~~eWi~AL~ 121 (668)
....++.|.++. ....| +.+.|+|+|+.|+.+||.||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 012345566653 22223 679999999999999999984
No 128
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.97 E-value=0.057 Score=48.74 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=48.3
Q ss_pred EEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHHHHHHH
Q 005939 39 KRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKT 118 (668)
Q Consensus 39 KRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~ 118 (668)
--|..-+|.-|.||-...+.. .+-|.|.|.....+......+|.|.+ .|..+.|+|.+..|++.|+.
T Consensus 41 ~AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~ 107 (112)
T PF15406_consen 41 AAWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVA 107 (112)
T ss_pred hhhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHH
Confidence 346666787677775433322 14566888776665555555555544 28999999999999999999
Q ss_pred HHH
Q 005939 119 ALE 121 (668)
Q Consensus 119 AL~ 121 (668)
+|.
T Consensus 108 ~lk 110 (112)
T PF15406_consen 108 QLK 110 (112)
T ss_pred Hhh
Confidence 985
No 129
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=94.27 E-value=0.0088 Score=67.25 Aligned_cols=175 Identities=19% Similarity=0.175 Sum_probs=113.8
Q ss_pred cccccchHHHhh-hCCCCcH-HHHHHHHHHHh---cC--CCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhh
Q 005939 164 LVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGD 236 (668)
Q Consensus 164 ~vFG~pL~~ll~-~~~~VP~-vl~~~i~~L~~---~G--l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~ 236 (668)
..||.-|....- -+++||. .+.+||..+.. ++ +...|.|++..+.... .+...|....|+.++..
T Consensus 208 ~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S~ 279 (670)
T KOG1449|consen 208 LNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVESW 279 (670)
T ss_pred ccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeecc
Confidence 345554433332 2567888 77777766665 22 4455677766543321 22345666789999999
Q ss_pred hHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 005939 237 CVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (668)
Q Consensus 237 lLK~fLReLPePLlp~~l~~~~i~~~~~~-~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA 315 (668)
+++-|.|.+|.|+.. .++... ...+.+..++- ....+++.|+.+-..|..||.....-. .+++
T Consensus 280 d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~ 343 (670)
T KOG1449|consen 280 DMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLA 343 (670)
T ss_pred ccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccce
Confidence 999999999999544 222222 23444555554 346899999999999999998877633 8999
Q ss_pred hhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 316 ivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
|++.|+++|++.. ++. ++..+- ...+....+..+.|++....|..+.
T Consensus 344 I~~~~~~~r~ppt----L~~-~~~h~~---------~~~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 344 IVWSPNLFRPPPT----LNG-ADTHLL---------SGLNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eecCCCCCCCCCC----CCc-hhhhhc---------ccCCcceeecccchhhhhhhhhccc
Confidence 9999999999842 222 111110 1111234567888999999998776
No 130
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.06 E-value=0.81 Score=41.71 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=56.7
Q ss_pred EEEEeeeeeeecCCCCCCc-EEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCC--------ce
Q 005939 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK--------KL 89 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~W-KKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~k--------k~ 89 (668)
.+.+|-|...+. .+.| +.|+|.|=++.|+|-|...... .... --+.|.+..+..+...+.+ +.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~----~~~~-yKgri~l~~~~I~d~~Dg~~~~~~~~~kn 73 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRR----DHLY-YKGRIDLDRCEVVNIRDGKMFSSGHTIKN 73 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccC----CcEE-EEEEEEcccEEEEECCCCccccCCceeEE
Confidence 467785543332 2234 5789999999999988543211 1111 1233555554443332221 24
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHH
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.|.+... ..+..|.|+|.|+++...|+.||..
T Consensus 74 afkl~~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 74 SLKIYSE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEc-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 4555432 3367899999999999999999975
No 131
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.04 E-value=0.23 Score=43.90 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=54.9
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC--CC-CCCCccceeeeCcEEcCCCceeeeecCCceEEEEcc
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS--AL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~--~~-p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~ 95 (668)
.+++|+|.....| .=|.|=|.|=++.|+|-+-... .. .+-.....++|..+.+.... |.+
T Consensus 3 Lv~eg~lvel~~~----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~-- 65 (96)
T cd01228 3 LVKDSFLVELVEG----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRI-- 65 (96)
T ss_pred ccccceeeeehhC----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhc--
Confidence 5788977644433 3477788888888887664321 11 11122334444444443310 222
Q ss_pred CCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 96 DGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 96 ~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
....++.|+|.|.|..|+.+|+.+|+...
T Consensus 66 ~~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 66 HNKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred cccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 13348999999999999999999998753
No 132
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.84 E-value=0.014 Score=65.77 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=51.5
Q ss_pred HHHHHHhhcccccCCCCccchhhhhcccccCCCCCCCCCcccccC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005939 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (668)
Q Consensus 294 l~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~ie~~~~--~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~I 371 (668)
+.||..|+.++....|.+.|||+|+||+|+|.+.. +.... .-|+ +++.......-++++++.|-+.|
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskei-----es~lcs~~~Gd------aAf~avq~qsvV~EfilnhvDvl 69 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEI-----ESSLCSHLWGD------AAFSAVQAQSVVSEFILNHVDVL 69 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHH-----HHhhhcccccc------HHHHHHHhhhhhhhhccccccee
Confidence 36899999999999999999999999999997632 21111 1122 22333333445788999999999
Q ss_pred CCCCC
Q 005939 372 FDDES 376 (668)
Q Consensus 372 F~~~~ 376 (668)
|....
T Consensus 70 F~~~a 74 (670)
T KOG1449|consen 70 FLPTA 74 (670)
T ss_pred cCCcC
Confidence 98654
No 133
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=93.76 E-value=0.03 Score=65.53 Aligned_cols=96 Identities=24% Similarity=0.349 Sum_probs=68.0
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEc
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit 94 (668)
+...++|+|||-+.+-. +..-+.|||..+.+..+.||..+++..+++ .|.+...+.+.. .....+.+++
T Consensus 83 ~isp~~~~gwldk~~pq-g~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v~~-~gd~kfevit 151 (1186)
T KOG1117|consen 83 PISPVIKSGWLDKLSPQ-GEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAVRN-FGDNKFEVIT 151 (1186)
T ss_pred ccCchhhcchhhccCcC-cccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhhhh-ccCceEEEEe
Confidence 44559999955433222 346689999999999999999988866433 344444333322 2233345555
Q ss_pred cCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 95 ~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
- .|+|.|.++++.++..|+..+++++.
T Consensus 152 n----~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 N----QRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred c----ceEEEEecCCcccceeeechhhhcch
Confidence 3 79999999999999999999999874
No 134
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.53 E-value=0.56 Score=46.71 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.8
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS 57 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~ 57 (668)
++|+||.+.+. ...|+++|+||..+.|+.|..-..
T Consensus 1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~~R 35 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLFKR 35 (185)
T ss_pred CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEEee
Confidence 47999955444 468999999999999999987543
No 135
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.47 E-value=1.6 Score=40.14 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=53.3
Q ss_pred CcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCC--CceEEEEecChHHH
Q 005939 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDL 113 (668)
Q Consensus 36 ~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~--gr~y~fqAeS~eE~ 113 (668)
.=+.|-+.|=...|+|-|-..... ..+...-.....|.++........++..+.|.+...++. ..+|.++|.|.+..
T Consensus 23 K~~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K 101 (114)
T cd01232 23 KGRERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETK 101 (114)
T ss_pred CCceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHH
Confidence 336677777777888877543321 111111112233444443222223334556777554443 47999999999999
Q ss_pred HHHHHHHHHHHh
Q 005939 114 YEWKTALELALA 125 (668)
Q Consensus 114 ~eWi~AL~~ai~ 125 (668)
+.|+..|+.++.
T Consensus 102 ~~W~~~I~~il~ 113 (114)
T cd01232 102 QEWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
No 136
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=93.46 E-value=0.093 Score=59.47 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=67.3
Q ss_pred CCCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee-eecCCceEE
Q 005939 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLT 91 (668)
Q Consensus 13 ~~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~-~~~~kk~~f 91 (668)
..+++.++|+|.|+ |.......-..||++|-+..|.|-+-.. ..+. ..+. .--.+.+..+.... ......+.|
T Consensus 266 V~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~~--~k~~-~r~~~s~~~~~v~~~~~~~~~~tF 339 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLPG--SKYE-VRARCSISHMQVQEDDNEELPHTF 339 (623)
T ss_pred cCcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hccc--ceec-cceeeccCcchhcccccccCCceE
Confidence 36778899999555 6555556789999999998888876544 2211 1000 00012222221111 112234567
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+++. ..|...|+|.|.++..+|+++|+.+|-.
T Consensus 340 ~~~G---~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTG---KKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEec---ccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 7764 2689999999999999999999999963
No 137
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=92.44 E-value=0.46 Score=42.43 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=49.8
Q ss_pred CCCCcEEEEEEEeC----CeEEEEeC--CCCCCCCCCccceeeeCcEEcC---CCceeeeecCCceEEEEccCCCCCceE
Q 005939 33 GWKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGGIDLN---NSGSVVVREDKKLLTVLFPDGRDGRAF 103 (668)
Q Consensus 33 ~~k~WKKRWFVL~~----~~L~YYKd--~~~~~p~~~~e~~l~L~~I~L~---~~~sv~~~~~kk~~fvit~~~~~gr~y 103 (668)
+...|.|.-.+|+. ..|.||-- ++...|+.+. -+..|. .++...- .++...|++.. .++..|
T Consensus 17 ~~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v------~C~~I~EvR~tt~LEm-PD~~nTFvLK~--~~~~ey 87 (107)
T cd01231 17 SGARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQV------ACSSISEVRECTRLEM-PDNLYTFVLKV--DDNTDI 87 (107)
T ss_pred CccccceeeEEEEecCCCceEEEEccCCCCCCCCcccc------chhhhhhhhhcccccc-cCcccEEEEEe--cCCceE
Confidence 45789998888864 34555544 4444433221 122222 2332222 34556677764 346799
Q ss_pred EEEecChHHHHHHHHHHHH
Q 005939 104 TLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 104 ~fqAeS~eE~~eWi~AL~~ 122 (668)
.|.|.+..+++.|+..|+.
T Consensus 88 I~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 88 IFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred EEEcCCHHHHHHHHHHHhc
Confidence 9999999999999999974
No 138
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=92.33 E-value=0.26 Score=52.74 Aligned_cols=106 Identities=15% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCCCcEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCC-----CceeeeecCC
Q 005939 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-----SGSVVVREDK 87 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~-----~~sv~~~~~k 87 (668)
..+..++..||..-.-.+ ..+..++.||..|+|.++|.|..++-.. ..++.....+.+.. .......+.+
T Consensus 276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t----~dw~rAe~ty~vye~mfki~Kdsd~~D~R 351 (505)
T KOG3549|consen 276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNT----ADWSRAEVTYKVYETMFKIVKDSDTVDSR 351 (505)
T ss_pred CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcch----hhhhhhhhhHHHHHHHHHHhccccccccc
Confidence 456778999966533333 3467789999999999999998765322 11111111111110 0001122567
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
++||.+.. ..|...||..+...|+.+|-++.+.|+-
T Consensus 352 ~~CF~~qs--~~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 352 QHCFLLQS--SGGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred cceEEEEc--CCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 78898875 3478999999999999999999988763
No 139
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.19 E-value=1 Score=40.48 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=28.2
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
++.+-++++ .+.+.+||+|+++..+|+..|++|.
T Consensus 65 kNafki~t~----~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 65 KKVLKLLIF----PESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CceEEEEeC----CccEEEEeCCHHHHHHHHHHHHHHh
Confidence 444455555 6889999999999999999999986
No 140
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=91.78 E-value=0.12 Score=61.41 Aligned_cols=89 Identities=24% Similarity=0.376 Sum_probs=57.4
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCC
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~g 100 (668)
-+|||+ |.....++|.+|||+|.++.|.||++......... +.+.+.... .......-+... .+. .
T Consensus 79 ~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~-------~~~~~~~a~---i~~~~~~~~~~~-~~~-~ 144 (799)
T KOG1737|consen 79 LEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCG-------GGINLVTAW---IQNGERMDICSV-DGS-C 144 (799)
T ss_pred ccceee--ccccccCCcccceEEecCcceeeeccCCccccCCC-------Ccccccccc---cccCCCcccchh-hcc-c
Confidence 457554 77778899999999999999999988765442222 223222210 111112112222 122 4
Q ss_pred ceEEEEecChHHHHHHHHHHHHH
Q 005939 101 RAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~a 123 (668)
..|+..+.+....+.|+.+++-+
T Consensus 145 q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 145 QIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred chhhhhhhHHHhhcchhhhhhhc
Confidence 77889999999999999999876
No 141
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.58 E-value=3.2 Score=39.29 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=50.9
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHHHHHH
Q 005939 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (668)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi 117 (668)
+.|.+.|=...+.|-|-............-.-...|.++.........+..+.|.+....+ ..+|.++|.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 5688888888888887553221101110011222344433222111122344566655433 579999999999999999
Q ss_pred HHHHHHHh
Q 005939 118 TALELALA 125 (668)
Q Consensus 118 ~AL~~ai~ 125 (668)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999885
No 142
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=89.15 E-value=0.15 Score=58.63 Aligned_cols=89 Identities=6% Similarity=-0.168 Sum_probs=57.2
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCC
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~ 99 (668)
.+.| +++++.+.+++|+.+||++.++.+.||+.+.+.. . +.+.+...++......+......+.
T Consensus 260 s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s---------~~~~~~~~~s~~fqli~~t~~~~~~---- 323 (936)
T KOG0248|consen 260 SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-S---------VTKLEQQGAAYAFQLITSTDKMNFM---- 323 (936)
T ss_pred HHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-c---------cceeeccchhHHhhhhhhceeEEEe----
Confidence 4556 4446666799999999999999999999887532 1 2233333222111111111111111
Q ss_pred CceEEEEecChHHHHHHHHHHHHHH
Q 005939 100 GRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 100 gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
..+|++-++...-+..|++++....
T Consensus 324 ~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred ccChhhhhhhHHHHHHHHHHHhccc
Confidence 3568999999999999999998754
No 143
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.90 E-value=2.1 Score=39.45 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=49.6
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCcccee----eeCcEEcCCCceeeee-cCCc--eEEEEccCCCCCceEEEEecC
Q 005939 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVVR-EDKK--LLTVLFPDGRDGRAFTLKAET 109 (668)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l----~L~~I~L~~~~sv~~~-~~kk--~~fvit~~~~~gr~y~fqAeS 109 (668)
=+.||..|=+..+.+-|...... +.++... .+..+.|......... ..++ +.|.+... .+...|.|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 46899888888888888654421 1111111 1222222221111011 1222 44555442 223679999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 005939 110 SEDLYEWKTALELALA 125 (668)
Q Consensus 110 ~eE~~eWi~AL~~ai~ 125 (668)
+++...||.+|..|+.
T Consensus 97 ee~K~kWm~al~~a~s 112 (116)
T cd01223 97 EHLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999986
No 144
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.04 E-value=3.6 Score=37.58 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHHHHH
Q 005939 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (668)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eW 116 (668)
=..||++|=.+.|++....+...- -.=+-.+++.++.++.-.. .+..++.|.|+ ++.-.+..+.+.+.+|..+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sG-f~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~--G~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSG-FIYQGKLPLTGIIVTRLED---TEALKNAFEIS--GPLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccc-eEEeeeecccccEEechHh---ccCccceEEEe--ccCcCcEEEEeCCHHHHHHH
Confidence 478999999999999876543220 0112234666666664221 23445667775 23346788889999999999
Q ss_pred HHHHHHHH
Q 005939 117 KTALELAL 124 (668)
Q Consensus 117 i~AL~~ai 124 (668)
+..|++.+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998754
No 145
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=86.36 E-value=0.52 Score=51.22 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=66.1
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-------CCceE
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------DKKLL 90 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-------~kk~~ 90 (668)
.|-+-|||-.+-.+.+...|+.-+++|+...|.+|..-+.+. ..+..+.....|....-|.... .-...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k----eaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~ls 366 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK----EAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLS 366 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH----HHhcChhhhhhhhhhhheecCCCCCCCcCCceEE
Confidence 566679776666667788999999999999999997765433 2222222222222211111111 11133
Q ss_pred EEEccCCCCC-ceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 91 TVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 91 fvit~~~~~g-r~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|...+.++.| .+|+|.++|..|+-.|...|-.-.++|
T Consensus 367 Fa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A 404 (506)
T KOG3551|consen 367 FATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA 404 (506)
T ss_pred EEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 4444444444 799999999999999999886544433
No 146
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=86.06 E-value=2 Score=40.68 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.2
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.+.|.|..-++.+..|+|+|+|..++++|++.|..+
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 356677666667778999999999999999999864
No 147
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=84.59 E-value=0.18 Score=57.86 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=39.3
Q ss_pred EEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCC
Q 005939 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78 (668)
Q Consensus 20 ~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~ 78 (668)
..+||||+.|... +...|+|.||||.+..|+.|.+.....+.+ .+.+-.+.|...
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~----~i~l~~~~i~~a 618 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAES----VIKLPLFTISVA 618 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhh----eeeccchhhhhH
Confidence 3568888776653 256799999999999999999988766433 334445555443
No 148
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=83.52 E-value=0.54 Score=52.38 Aligned_cols=103 Identities=17% Similarity=-0.011 Sum_probs=59.4
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCe------EEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC---C
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTS------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~------L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~---k 87 (668)
+..+|.|+++.+..+.+.+.|.++|++|..+. |.+|..++... ...+...+ -+.+.++++.++..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~~~~~-rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWPYRCL-RRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccchhcc-eeeEeeccceeeecccccccC
Confidence 56789999998888888899999999998753 33443322211 11111111 15577777766543211 1
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
...++++.... .. +|-+...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a-~e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRA-EE--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecch-HH--HHHHHHHHHhhhhhhhhhhcc
Confidence 11122211111 11 666667777788999997654
No 149
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.06 E-value=3.7 Score=44.22 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 005939 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHER-------RLALEQDVSRLQEQL 637 (668)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 637 (668)
.++....|+.|..+|+-.+-.+|++|.||++.|.+= +.+|||.+..||++.
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 566677899999999999999999999998877654 555666666655554
No 150
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=81.80 E-value=2.2 Score=37.55 Aligned_cols=31 Identities=42% Similarity=0.611 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHH------HHHhHHHHHHhhh-cC
Q 005939 623 RLALEQDVSRLQEQLQ------AERDLRAALEVGL-SM 653 (668)
Q Consensus 623 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~ 653 (668)
...|+++.++|||||. +||==|.||++|| .|
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ei 41 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEI 41 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3568888999999985 6999999999999 54
No 151
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=79.86 E-value=0.036 Score=69.31 Aligned_cols=105 Identities=24% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCcEEEEeeeeeee------cCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCc---EEcCCCceeee--
Q 005939 15 ASNTVFKSGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGSVVV-- 83 (668)
Q Consensus 15 ~~~~V~KeGyL~l~K------kg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~---I~L~~~~sv~~-- 83 (668)
+....-.+|+||.+- +....+.|..-||++..+.+.||+|.+..... .+ +..++ +.+..+...+.
T Consensus 2295 ~~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~--ve--~~~r~e~~lel~~a~i~~a~d 2370 (2473)
T KOG0517|consen 2295 NSAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLAS--VE--LLVRGEPPLELDMAAIEVASD 2370 (2473)
T ss_pred CcHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCccccc--ch--hhccCCcchhcchhHHHHHHH
Confidence 344457789997431 22346889999999999999999998764421 00 11111 11222111111
Q ss_pred ecCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 84 ~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
...|++.|.+. ..+|..|.|+|..+++|..|+.++...++
T Consensus 2371 y~kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2371 YHKKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HHHHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 12345555554 46699999999999999999999988775
No 152
>PF15411 PH_10: Pleckstrin homology domain
Probab=78.18 E-value=25 Score=32.39 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCcEEEEEEEeCCeEEEEeCCCCCCCC---------CCccceeee-CcEEcCCCceeeeec-CCceEEEEcc-CCCCCce
Q 005939 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTL-GGIDLNNSGSVVVRE-DKKLLTVLFP-DGRDGRA 102 (668)
Q Consensus 35 k~WKKRWFVL~~~~L~YYKd~~~~~p~---------~~~e~~l~L-~~I~L~~~~sv~~~~-~kk~~fvit~-~~~~gr~ 102 (668)
..|+-+.+-|=...|.++|........ +.....+.| |.|.+.....+.... ...+...|.. ....--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 569999999999999999987665432 122333344 347777766654433 2233334433 2233468
Q ss_pred EEEEecChHHHHHHHHHH
Q 005939 103 FTLKAETSEDLYEWKTAL 120 (668)
Q Consensus 103 y~fqAeS~eE~~eWi~AL 120 (668)
|+|...|++.+..|-.+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999998875
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.74 E-value=7.4 Score=43.44 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcccc
Q 005939 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (668)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (668)
..||+.|..+..+|. ||+.=+-.|..+|.+|+.+..+-+.|.--|.++|+||+.||++-.+|-.++..-.|++
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 478888888877775 6777788899999999999988889999999999999999999999988876666554
No 154
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.79 E-value=20 Score=32.54 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.1
Q ss_pred eEEEEccCC-CCCceEEEEecChHHHHHHHHHHHH
Q 005939 89 LLTVLFPDG-RDGRAFTLKAETSEDLYEWKTALEL 122 (668)
Q Consensus 89 ~~fvit~~~-~~gr~y~fqAeS~eE~~eWi~AL~~ 122 (668)
.+|.|.... .+-+++.|.|++.++++.|+..|+.
T Consensus 80 ~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 455554321 1257899999999999999999864
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.59 E-value=2.1e+02 Score=34.49 Aligned_cols=46 Identities=39% Similarity=0.412 Sum_probs=27.0
Q ss_pred hcchhhhhhHHHHHH---------HHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHH
Q 005939 603 RGNAILQASLERRKQ---------ALHERRLALEQDVS-RLQEQLQAERDLRAALE 648 (668)
Q Consensus 603 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 648 (668)
+.|.-||..+-.-.+ +.=||||+-||+-. .|..||++||.-|.+-|
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee 522 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEE 522 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456667764322222 23367777777665 66777888876665544
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.48 E-value=11 Score=39.70 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 005939 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (668)
...+++++..-..|+.+|.+--+....++..++.++++|+.||..|.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777778888888888888888888888888888776
No 157
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=70.06 E-value=3.4 Score=47.21 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee--------eec
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--------VRE 85 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--------~~~ 85 (668)
..++...|+||+---.... ..-||.|..|+..++..|.+..... -.+.|.|....++. +..
T Consensus 408 Rksst~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~~vp~~ 476 (888)
T KOG4236|consen 408 RKSSTKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFSLVPAG 476 (888)
T ss_pred ccchhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcccCCCC
Confidence 4567788999653111111 2235666678888888887766533 23334444433332 223
Q ss_pred CCceEEEEccCCCCCceEEEEecC------------hHHHHHHHHHHHHHH
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELAL 124 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS------------~eE~~eWi~AL~~ai 124 (668)
...+||.|.. ..+.||-.++ .+..+.|-.||+.++
T Consensus 477 ~~phcFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 477 TNPHCFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCCceEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 4568998876 4577777777 455889999999876
No 158
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.41 E-value=0.86 Score=51.72 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEeC----CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecC
Q 005939 34 WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET 109 (668)
Q Consensus 34 ~k~WKKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS 109 (668)
.|..+|.||..+. .++.||++.. . +-..+.+.++.++.... ....+-..|.+.+.......+|+.|++
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~~--a----p~~~i~l~gcev~~dV~--~~~~k~~i~l~~~~~~~msEi~LRCd~ 443 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSRG--A----PAISINLKGCEVTPDVN--LSQQKYAIKLLVPTAEGMSEIWLRCDN 443 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhcC--C----CCCchhhcCcccCCccc--cccccceEEEEeecCCccceeEEecCC
Confidence 5666677666655 4555555541 1 11122344444444222 122233445554444446889999999
Q ss_pred hHHHHHHHHHHHHHH
Q 005939 110 SEDLYEWKTALELAL 124 (668)
Q Consensus 110 ~eE~~eWi~AL~~ai 124 (668)
+...-+||.|.+-|.
T Consensus 444 E~QYA~WMAaCrLAS 458 (664)
T KOG3727|consen 444 EQQYARWMAACRLAS 458 (664)
T ss_pred HHHHHHHHHHhhHhh
Confidence 999999999998664
No 159
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=65.97 E-value=8.4 Score=44.30 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEeC---CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecCh
Q 005939 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (668)
Q Consensus 34 ~k~WKKRWFVL~~---~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~ 110 (668)
.+.|+.-|+++-. ..++-|..+.+...+. .+++.++.+.....+. ..+..++|.++. ....|+|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~----~iPl~~~~v~~pe~~~-~~D~~~~~k~~~---s~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQA----TIPLPGVEVTIPEFVR-REDLFHVFKLVQ---SHLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCcccccccc----ccccCccccCCCcccc-cchhcchhhhhh---hcceeeeccCCH
Confidence 4789999998853 5788888777754322 3355566555422221 122333444443 256899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005939 111 EDLYEWKTALELALA 125 (668)
Q Consensus 111 eE~~eWi~AL~~ai~ 125 (668)
+-.+.|+..|..|+.
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988874
No 160
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.70 E-value=9.1 Score=45.64 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=40.6
Q ss_pred EEcCCCceeeeecC---CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 73 IDLNNSGSVVVRED---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 73 I~L~~~~sv~~~~~---kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++..+..+..... +.+.|++.+.+...-.|.|.|++.+++.+|+++|+.+...+
T Consensus 856 ~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 856 LDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred ccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 34444444443333 34778888877777889999999999999999999987644
No 161
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=64.67 E-value=18 Score=29.48 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005939 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (668)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (668)
.|.+|--+||.+++|++..+.+=+.-|+|-|+
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999998775
No 162
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=62.67 E-value=0.1 Score=56.30 Aligned_cols=83 Identities=27% Similarity=0.437 Sum_probs=59.2
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-cCCceEEEEccCCCCCceEEEEecChHH
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSED 112 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~fvit~~~~~gr~y~fqAeS~eE 112 (668)
...|++.|||+....+-||.+........ -.+.|+|..|+.+... ...++-|.|-. .+.+|.|.|-+.--
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~---~~~~~tL~~~~s~I 102 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHT---KDAVYTLSAMTSGI 102 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeecc---cchhhhhHHHHHHH
Confidence 34699999999999999998876533111 2355788887764321 22344444432 27899999999999
Q ss_pred HHHHHHHHHHHHh
Q 005939 113 LYEWKTALELALA 125 (668)
Q Consensus 113 ~~eWi~AL~~ai~ 125 (668)
+..|+.|+++.+.
T Consensus 103 r~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 103 RRNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998764
No 163
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=62.22 E-value=46 Score=31.87 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=51.3
Q ss_pred EEEEEEEeCCeEEEEeCCCCCCCCCCcc---------------ceeeeCcEEcCCCceeeeecCCceEEEEcc-----CC
Q 005939 38 KKRWFILTRTSLVFFKNDPSALPQRGGE---------------VNLTLGGIDLNNSGSVVVREDKKLLTVLFP-----DG 97 (668)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~e---------------~~l~L~~I~L~~~~sv~~~~~kk~~fvit~-----~~ 97 (668)
.---||.+.-.+++||+....+.+-++. .-++...+.+..... ......+.+.++. .+
T Consensus 50 e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~eg 127 (160)
T cd01255 50 ELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSELEG 127 (160)
T ss_pred eEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccccC
Confidence 4467899999999998776544222110 001111111111100 1223445555432 33
Q ss_pred CCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 98 ~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+..++|.||+.+++-.+..++.|++.+..
T Consensus 128 RpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 128 RPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred CCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999863
No 164
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=59.20 E-value=14 Score=32.58 Aligned_cols=27 Identities=48% Similarity=0.710 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHH------HHHHhHHHHHHhhh
Q 005939 625 ALEQDVSRLQEQL------QAERDLRAALEVGL 651 (668)
Q Consensus 625 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 651 (668)
.+..++++||+|| ++||==|.||.+||
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRiAlKAGL 39 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRIALKAGL 39 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3455667777776 47999999999999
No 165
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=58.81 E-value=7.3 Score=44.76 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.6
Q ss_pred eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
++|+|... .+.++.|.|.+.+|++.|++||+.-|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 57877643 378999999999999999999998774
No 166
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.76 E-value=55 Score=33.32 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHhhhhhHHHHHHHHH----HhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005939 584 IQRLEITKNDLRHRIAK----EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (668)
+++||.--.+|+.+++. --...+.||-.++.+++...+ |+++-++|++||+.=+.-..+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 123345566666666665443 666666666665543333333
No 167
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.27 E-value=45 Score=27.34 Aligned_cols=46 Identities=22% Similarity=0.467 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 590 TKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
+|-.++..+.+ ||. =.-.+++|=|+-..|..+|+++|.+|++++-.
T Consensus 12 akQ~~~eEL~k-vk~---~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 12 AKQAIQEELTK-VKS---ANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 332 12346788899999999999999999999854
No 168
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.31 E-value=47 Score=38.98 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=40.3
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhccc
Q 005939 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (668)
Q Consensus 242 LReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~ 321 (668)
|-+-..|||.......+..+++...+ +|+..++. .|++.|.-...+.-..-+||+.-|-. -|.
T Consensus 218 LAERkPPlFnMNAMSALYHIAQNesP-------------tLqs~eWS--~~F~~Fvd~CLqKipqeRptse~ll~--H~f 280 (948)
T KOG0577|consen 218 LAERKPPLFNMNAMSALYHIAQNESP-------------TLQSNEWS--DYFRNFVDSCLQKIPQERPTSEELLK--HRF 280 (948)
T ss_pred hhhcCCCccCchHHHHHHHHHhcCCC-------------CCCCchhH--HHHHHHHHHHHhhCcccCCcHHHHhh--cch
Confidence 45556789998888888888776552 44444442 24455555555555566777654322 244
Q ss_pred ccCCC
Q 005939 322 LLRPL 326 (668)
Q Consensus 322 Llr~~ 326 (668)
++|+.
T Consensus 281 v~R~R 285 (948)
T KOG0577|consen 281 VLRER 285 (948)
T ss_pred hccCC
Confidence 45544
No 169
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=55.26 E-value=19 Score=44.91 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=37.6
Q ss_pred cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005939 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (668)
Q Consensus 85 ~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~ 130 (668)
.+++.||+|+.....-..|-+.|.|..|++-|++.|+.++...|..
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4677788887653445789999999999999999999999866543
No 170
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.12 E-value=52 Score=37.52 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=42.2
Q ss_pred ccCCCCchHHHHHHHhhhhh---HHHHHHHHHHhhcchhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
.-|+-..++-...-+|+..+ .+|+.+|+++ +.+++ ++.+.+.++=..||.++++|++|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665544 7888888876 45555 666677666678999999999998
No 171
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=48.87 E-value=39 Score=39.38 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceee----eCcEEcCCCcee--ee-----ecCCceEEEEcc-CCCCC-
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLT----LGGIDLNNSGSV--VV-----REDKKLLTVLFP-DGRDG- 100 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~----L~~I~L~~~~sv--~~-----~~~kk~~fvit~-~~~~g- 100 (668)
....+..|+.|-...|.+-|.+.... +.+. ...+.+..+... .+ ....++.|.++. ....+
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~------f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~ 569 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGS------FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGR 569 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCc------eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCC
Confidence 34456888888888888776554322 1111 112222222210 00 112345676654 22223
Q ss_pred -ceEEEEecChHHHHHHHHHHH
Q 005939 101 -RAFTLKAETSEDLYEWKTALE 121 (668)
Q Consensus 101 -r~y~fqAeS~eE~~eWi~AL~ 121 (668)
..|+|.|++..|+++||.|+.
T Consensus 570 ~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 570 QTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ceeeeecCCchHHHHHHHHhcC
Confidence 579999999999999999985
No 172
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.08 E-value=83 Score=33.49 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=39.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005939 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQEQLQAE 640 (668)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 640 (668)
..+..|...-.+++.|+.++.+.+..|+.-+..-++.|++- |..||..+..|+++|.--
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777777766666653 445777777777777543
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.15 E-value=67 Score=38.65 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhh-------hHHHHHHHHHHhhcchhhhhhHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 005939 579 EEELAIQRLEIT-------KNDLRHRIAKEARGNAILQASLE-------RRKQALHERRLALEQDV---SRLQEQLQAER 641 (668)
Q Consensus 579 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 641 (668)
--|.+|.||.+. .+||+++|..---+...|...|. .=...+|+-=.+.++|- +-|..+|..||
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778877653 56777777533222222222221 11122233333334443 45666777777
Q ss_pred hHHHHHHhhh
Q 005939 642 DLRAALEVGL 651 (668)
Q Consensus 642 ~~~~~~~~~~ 651 (668)
..|++||.=|
T Consensus 502 ~~R~~lEkQL 511 (697)
T PF09726_consen 502 RQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 174
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=46.66 E-value=1.1e+02 Score=29.77 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=48.3
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDVSRLQEQLQAE 640 (668)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (668)
.++|+...-||.-..++..++.-=|+-=..|+|. +..+.+.|.+|+-++|.-+.+|++=|+..
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777889998888888885444444445554 45567889999999999999999988653
No 175
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.27 E-value=87 Score=34.96 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHHHHHHHHh------------------------hcchhhhhhHHHHHHHHHH--------------HHHH
Q 005939 584 IQRLEITKNDLRHRIAKEA------------------------RGNAILQASLERRKQALHE--------------RRLA 625 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~--------------~~~~ 625 (668)
|++||..|.-||.+...+| .-=.+|||.+||=+..|.- --.-
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778888888888763322 1123678888875544321 1112
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh
Q 005939 626 LEQDVSRLQEQLQAERDLRAALEVG 650 (668)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (668)
.+.+.+|||+.|+.|-.-|.||=--
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRM 314 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999887433
No 176
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.78 E-value=1.1e+02 Score=31.99 Aligned_cols=70 Identities=33% Similarity=0.415 Sum_probs=56.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRL---ALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
.+||.|..-+..|..+|...-+.=..+|+-+++=+.++.+... .|++.|.+++..+|+.|.-..-+|.-|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999987777777788888877666666655 467899999999999988777776655
No 177
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.59 E-value=97 Score=26.20 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHH
Q 005939 593 DLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAAL 647 (668)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 647 (668)
.|..||..=+-..+.||-. |..++.+|.+.+.+|+++..+|++.-. -.+-+|+-|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666656666666644 444556777889999999988875433 233444443
No 178
>PRK11637 AmiB activator; Provisional
Probab=45.23 E-value=1.6e+02 Score=33.18 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
+++.|+..++.+...-..|+++..+|+.+|.+
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555667777777776664
No 179
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=43.45 E-value=1.2e+02 Score=31.63 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
++.=+..|++..+.+.+|+.+||-++.+|.+.+++
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888888877665543
No 180
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.15 E-value=62 Score=37.42 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=42.9
Q ss_pred HhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005939 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 637 (668)
-|-+.||||-.++.+=--+|-|||-.||-|||| |+|+--.||.++.+++..+
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999988889999999999999997 6777777777777766544
No 181
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=42.82 E-value=11 Score=29.45 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=19.1
Q ss_pred CCCcEEEEEEEeCCeEEEEeC
Q 005939 34 WKSWKKRWFILTRTSLVFFKN 54 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd 54 (668)
.+.|.|.|.++.+.+|.+||-
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 578999999999999999974
No 182
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=41.35 E-value=54 Score=26.70 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 005939 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (668)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (668)
|.||=-+|.-+++||.-||-+-.+-|.|-|+=
T Consensus 30 l~eRIalLq~EIeRlkAe~~kK~~srsAAeaL 61 (65)
T COG5509 30 LEERIALLQAEIERLKAELAKKKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 45555566677888888999999999988863
No 183
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.56 E-value=1.1e+02 Score=30.49 Aligned_cols=56 Identities=27% Similarity=0.361 Sum_probs=44.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHH
Q 005939 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQ 638 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 638 (668)
+|+..+..+.+|+...+.=-+--|-|+-+.|.||.-+|++ |. +|++...-|+++|+
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e 133 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILE 133 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888776677788999999999988864 44 78888887777543
No 184
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=39.65 E-value=23 Score=41.34 Aligned_cols=154 Identities=13% Similarity=-0.011 Sum_probs=93.0
Q ss_pred cCCCCCCCcccccchHHHhhhCC-----CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC--CccCCCC
Q 005939 156 RDKRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG--KTEFSAD 228 (668)
Q Consensus 156 k~~~~~~~~vFG~pL~~ll~~~~-----~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g--~~~~~~~ 228 (668)
+...+.+..+|+ -|..+..... -.+.-..+|..+....+....|.|+.+| ..+..++..-+.+ ++.+..+
T Consensus 30 ~~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d 106 (577)
T KOG4270|consen 30 KVVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTD 106 (577)
T ss_pred cccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcc
Confidence 334556666777 5555443311 1355568888888889999999999999 3344454444333 3566677
Q ss_pred CCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHHccCChhHHHHHHHHHHHHHHhhccc
Q 005939 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHA 304 (668)
Q Consensus 229 ~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~----ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s 304 (668)
...++++.+++.+++.+ +|.++.-|+..+.......... ...+++. ...|..|+ +-+++.||...
T Consensus 107 ~~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~---- 175 (577)
T KOG4270|consen 107 QRHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG---- 175 (577)
T ss_pred hhhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----
Confidence 78899999999999988 6777666655444322221111 2334443 35677777 56666666553
Q ss_pred ccCCCCccchhhhhccccc
Q 005939 305 HENRMTPSAVAACMAPLLL 323 (668)
Q Consensus 305 ~~NkMt~~NLAivfgP~Ll 323 (668)
..+.|.--+...+|.++--
T Consensus 176 ~l~~e~Gl~eEGlFRi~~~ 194 (577)
T KOG4270|consen 176 RLLLEGGLKEEGLFRINGE 194 (577)
T ss_pred hhhhhcCccccceeccCCC
Confidence 2344444455555555444
No 185
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.53 E-value=1.3e+02 Score=32.03 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=53.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
-..+|..-.+|+..|..-++.||.|+..+..-+.++ ...|..||.++..|+.+|..+.-.|..||.-+
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 345677777888999888999999988776544444 44567889999999999999999999998744
No 186
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=39.39 E-value=96 Score=25.95 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHH
Q 005939 593 DLRHRIAKEARGNAILQASLERRKQAL 619 (668)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (668)
.|+.+|-+=.--|..|+++||.||+.=
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~s 28 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQS 28 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776778999999999999743
No 187
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.23 E-value=1e+02 Score=30.91 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
...|++++....+|+.+|.++.++... + +.|.. +-++...|++.++.|+.+|+
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~~~r~~---~-~eR~~-~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAKKGREE---S-EEREE-LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---c-HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666555433321 1 34443 44556677888888888877
No 188
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=8.3e+02 Score=30.04 Aligned_cols=133 Identities=11% Similarity=0.187 Sum_probs=83.4
Q ss_pred cccccchHHHhhhCCCCcHHHHHHHHHHHhc--C---CCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhH
Q 005939 164 LVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (668)
Q Consensus 164 ~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~--G---l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (668)
..|-.+|-.++.....+=.++.++|.+|... + ++.+..|-.+-+...++.++-.+-.. +....+++.|--=|
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHH
Confidence 4455566666666667788888888877752 2 45667778888999898887766532 11122333333334
Q ss_pred HHHhhhCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHHccCChhHHHHHHHHHHHHH
Q 005939 239 KHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMMH 298 (668)
Q Consensus 239 K~fLReLPeP-----------------Llp~~l~~~~i~~~~~~~~---~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~ 298 (668)
+.|.+.-+.. =++..|..-++......+. .+-+..||.+| +.=|..|..+|.+|..+|.
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHhh
Confidence 4444443321 1334455555555554432 45577888866 6899999999999999886
Q ss_pred Hh
Q 005939 299 TI 300 (668)
Q Consensus 299 ~V 300 (668)
.+
T Consensus 477 ti 478 (968)
T KOG1060|consen 477 TI 478 (968)
T ss_pred hh
Confidence 54
No 189
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.90 E-value=1.4e+02 Score=33.93 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=11.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhHH
Q 005939 622 RRLALEQDVS-RLQEQLQAERDLR 644 (668)
Q Consensus 622 ~~~~~~~~~~-~~~~~~~~~~~~~ 644 (668)
|-||.|++.- .+|.+|.|||..|
T Consensus 549 kql~~ErklR~~~qkr~kkEkk~k 572 (641)
T KOG3915|consen 549 KQLAMERKLRAIVQKRLKKEKKAK 572 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 4566666665443
No 190
>PRK11637 AmiB activator; Provisional
Probab=37.89 E-value=1.6e+02 Score=33.09 Aligned_cols=8 Identities=25% Similarity=0.065 Sum_probs=3.9
Q ss_pred CccccccC
Q 005939 654 SSGQFSSS 661 (668)
Q Consensus 654 ~~~~~~~~ 661 (668)
..|.|..|
T Consensus 303 ~~g~~~~P 310 (428)
T PRK11637 303 PRGQAFWP 310 (428)
T ss_pred CCCCCccC
Confidence 34555544
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.76 E-value=1e+02 Score=28.62 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhhh
Q 005939 583 AIQRLEITKNDLRHRIAKEARGNAILQA 610 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (668)
.+.+|+..|..|...|.+=.+.|..+++
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888777777766654
No 192
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=37.03 E-value=13 Score=35.52 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCCcEEEEEEEeCCeEEEEeCCCCCC
Q 005939 34 WKSWKKRWFILTRTSLVFFKNDPSAL 59 (668)
Q Consensus 34 ~k~WKKRWFVL~~~~L~YYKd~~~~~ 59 (668)
++.|.|+|+++.+..|.+||--+-+.
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt~ 53 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVTD 53 (165)
T ss_pred HHHHhhheEeecccceEEEEeeeccc
Confidence 57899999999999999999765443
No 193
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.42 E-value=1.7e+02 Score=32.90 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Q 005939 594 LRHRIAKEARGNAILQASLERRKQALHERRL---ALEQDVSRLQEQLQAERDLRAALE 648 (668)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 648 (668)
|...+.+--|-.+.|+++|+.+.+-|.|.+. +|++.++++..|.-++|.-|+|-|
T Consensus 201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~ 258 (420)
T COG4942 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE 258 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788899999988888888875 799999999988878877777433
No 194
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=35.68 E-value=45 Score=27.76 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 005939 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (668)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (668)
+|-.+++-++.|+.+|++|...|.++|-=+.+
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~ 34 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRL 34 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999998875533
No 195
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=35.44 E-value=90 Score=27.43 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
+.-++|=..|+..-.+|.++|.+|+-||..||.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888999999999999999999999986
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.26 E-value=1.9e+02 Score=24.20 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=34.4
Q ss_pred HHhhhhhHHHHHHHHHHhhcchhhhhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 585 QRLEITKNDLRHRIAKEARGNAILQASLE----------RRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
++||+.+..||.|+.-=.+-|++.|.-+. ++=...++.=.-|-.+|+.|+.+|+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999777777777665432 1222333333445566666666654
No 197
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.22 E-value=2.3e+02 Score=29.30 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=33.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
+.++.--..|.+.+......|..+|..|++.+..||.-|..-|.-+
T Consensus 106 ~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 106 EEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777888888888888888888887776654
No 198
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.98 E-value=2.2e+02 Score=29.74 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=13.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhh
Q 005939 581 ELAIQRLEITKNDLRHRIAKEAR 603 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~ 603 (668)
...|+++-..+..|+.+|.+...
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443
No 199
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.45 E-value=1.8e+02 Score=33.29 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=27.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005939 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----------ALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (668)
+|-++-.++.+|+. =.+.|..|++..||=++ ||.--|..|+++...|++++|+=+.+-.-|
T Consensus 64 lva~~k~~r~~~~~----l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 64 LVAEVKELRKRLAK----LISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444444444 44455555554444322 343444444445445544444443333333
No 200
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=34.16 E-value=61 Score=32.82 Aligned_cols=31 Identities=39% Similarity=0.469 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 606 AILQASLERRKQALHERRLALEQDVSRLQEQ 636 (668)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (668)
+.|||--|||-+.=+.-|.-|||++..|+-|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~q 43 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQ 43 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999998888899999999766544
No 201
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.33 E-value=2.8e+02 Score=25.32 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=4.1
Q ss_pred HHhhhhhHHHHHHHH
Q 005939 585 QRLEITKNDLRHRIA 599 (668)
Q Consensus 585 ~~~~~~~~~~~~~~~ 599 (668)
.+||+.+++||++.+
T Consensus 5 ~~l~as~~el~n~La 19 (107)
T PF09304_consen 5 EALEASQNELQNRLA 19 (107)
T ss_dssp ---------HHHHHH
T ss_pred HHHHhhHHHHHHHHH
Confidence 467777788877763
No 202
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=33.24 E-value=1.7e+02 Score=26.34 Aligned_cols=60 Identities=27% Similarity=0.274 Sum_probs=47.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhh----hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHERR----------LALEQDVSRLQEQLQAERDL 643 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 643 (668)
|.-++.+=+++|.|||.==|-=++|= ++.|.||-|=++.= -.+|+++..||+||-.+.|-
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~lde 74 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLDE 74 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999987666666776 78999998877753 24788999999999887663
No 203
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=33.09 E-value=1.4e+02 Score=26.79 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005939 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (668)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (668)
.+++.|=+|.+.+.|+|.-.| .||+-|-.=|+-|+||.+
T Consensus 43 ~mH~~LL~~i~~~ee~R~~~E----~lQdkL~qi~eAR~AlDa 81 (96)
T PF12210_consen 43 AMHPQLLKYIQEQEEKRVYYE----GLQDKLAQIKEARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 356778889999999998766 588888888899999875
No 204
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.80 E-value=1e+02 Score=27.98 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
...+.++..|.+++..|++..++||++++.=..+.+.++.+|
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (116)
T cd04769 75 LPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDAL 116 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455778899999999999999999999988777777776654
No 205
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=32.49 E-value=1.5e+02 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=6.4
Q ss_pred HHHhhhhhHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIA 599 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (668)
|.+|+..-..|+.+++
T Consensus 68 ~~~l~~~~~rL~~~~~ 83 (151)
T PF11559_consen 68 IERLQNDVERLKEQLE 83 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 206
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.54 E-value=2.4e+02 Score=28.46 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=27.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHH
Q 005939 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (668)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (668)
+.|..--+||+-|.-+...|+.--.-=+-||+-|..+
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~ 138 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIA 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777899999999999976544445688777653
No 207
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.45 E-value=1.7e+02 Score=27.66 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 612 LERRKQALHERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
.++|.+.|..++..|.+....++.+|+.++.
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~ 108 (158)
T PF03938_consen 78 RQKRQQELQQKEQELQQFQQQAQQQLQQEEQ 108 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888888764
No 208
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.44 E-value=92 Score=26.79 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.6
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhcch----hhhhhHHHHHHHHHHH
Q 005939 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~ 622 (668)
-|+|||.-|..+...| -.||||+- ++-.=+.-||+.-+||
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899984 4555555667666655
No 209
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=31.01 E-value=3.5e+02 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=30.8
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
..+.|.+.+. .+..-|.+++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4456666542 6789999999999999999999998754
No 210
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.65 E-value=1.4e+02 Score=27.60 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhh
Q 005939 609 QASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVG 650 (668)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 650 (668)
-+.|+.|++.+..+--.||+.-..|++++.. +..||.+|..|
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999974 67788888765
No 211
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.37 E-value=2e+02 Score=30.42 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=26.3
Q ss_pred HhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 005939 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQ 628 (668)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (668)
+++.+++.|-+--. .-|.|-+.+||||-.|..-|.-||.
T Consensus 120 ~~q~~~~~Lnnvas----dea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 120 RLQSSRAQLNNVAS----DEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544333 3367899999999988877777763
No 212
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.20 E-value=1.5e+02 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.-|+.=.++|++.+.+|.+++.+||.+|+
T Consensus 105 ~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 105 QAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433334444444445555554444443
No 213
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.13 E-value=1.9e+02 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005939 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (668)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (668)
+..+..+|+.++.+|++....|+++|++=+.-.++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888999999999999999887644333344
No 214
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=29.95 E-value=3e+02 Score=31.57 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHhhcch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005939 599 AKEARGNA-ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (668)
Q Consensus 599 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (668)
|.+-|+|. .||+.++|| ++|+|...++.|+|+|.+--..+
T Consensus 274 A~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~ 314 (659)
T KOG4140|consen 274 APEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSL 314 (659)
T ss_pred chhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhH
Confidence 33445443 467766655 78999999999999998765443
No 215
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.71 E-value=3.5e+02 Score=23.51 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHh--------hcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005939 581 ELAIQRLEITKNDLRHRIAKEA--------RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (668)
+..|..|+..+.+++..+.... ......-..|+.+...+......++++|.++++.|.+-+--+.++|
T Consensus 18 ~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 18 EEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777766665444 1112223456777777777777888888888887776555444444
No 216
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.67 E-value=2e+02 Score=33.12 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
.++.....+|.++..-.-.++.|++.||...++..|++..|++--.+|..|.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455566777777766666666666666655555554
No 217
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.44 E-value=2.5e+02 Score=26.25 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (668)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (668)
.+++..|+.=-..-...++.|+.-+....++|..||++++.++..
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334444433222333344445555555555555555555554443
No 218
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.27 E-value=2.3e+02 Score=32.10 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 005939 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (668)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (668)
++.++.|.+.+.....++.+.++.++++++.=+.+..+++-|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTK 203 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55666777888888888888888888888888888888888864
No 219
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.29 E-value=92 Score=33.00 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 005939 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (668)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (668)
+++|.+.-.++ +..|.| ||++||.||+-|.|-|+.++
T Consensus 100 ~aAk~e~E~~~-~lLke~--l~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 100 KAAKKEYESKK-KLLKEN--LISELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhhhh
Confidence 34444444443 345554 89999999999999998875
No 220
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=27.86 E-value=88 Score=37.07 Aligned_cols=58 Identities=36% Similarity=0.502 Sum_probs=41.9
Q ss_pred HHHhhhhhH-HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005939 584 IQRLEITKN-DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (668)
Q Consensus 584 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (668)
|-|||--|. |.+.|.+ |-+|-.||.+|+=| +-|.||+|==+-.+.| -++|++||.|.+
T Consensus 354 ~gkLdp~~aeeF~kRV~---~~ia~~~AEIekmK-~~Hak~m~k~k~~s~l---k~AE~~LR~a~~ 412 (669)
T PF08549_consen 354 VGKLDPGKAEEFRKRVA---KKIADMNAEIEKMK-ARHAKRMAKFKRNSLL---KDAEKELRDAVE 412 (669)
T ss_pred ccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHhhccHH---HHHHHHHHhccC
Confidence 345555554 4677777 55688999999865 5699999755555555 579999999986
No 221
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.93 E-value=1.9e+02 Score=35.33 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=31.3
Q ss_pred hHHHHHHHhhhhhHHHHHHH---HHHhhcchhhhhhHHHHHHHHHHHHH
Q 005939 579 EEELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRL 624 (668)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (668)
+=|..|++||..+.+++.+. +++.+.-..+++.|+++++.|.++|.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999988887765 34444555666666666666655544
No 222
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.86 E-value=1.7e+02 Score=26.45 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 005939 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAAL 647 (668)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 647 (668)
+-+.|+.|.+.+.++.-+||+....|++++.. ++.||.+|
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34668888888888888888888888888864 55666665
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.85 E-value=2e+02 Score=34.35 Aligned_cols=54 Identities=28% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHH
Q 005939 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ--LQAERDLRAAL 647 (668)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 647 (668)
.+|.+|+.----|+.+||++.--+..||. |-+|+||-+|-|++ .|.=-|||.+|
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk-~nrlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQK-ENRLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666654444578889988877777764 34667777766554 34455666665
No 224
>PF15463 ECM11: Extracellular mutant protein 11
Probab=26.83 E-value=2e+02 Score=27.16 Aligned_cols=63 Identities=19% Similarity=0.430 Sum_probs=50.2
Q ss_pred CCCCcccCCCCch-----HHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 567 KTSSVESIDSSGE-----EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (668)
Q Consensus 567 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (668)
.++|++.-+.+|+ --..|+||-.++..|+.+++ ++.+-+.+|-.||..+...|.+.+.+++..
T Consensus 67 s~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~-------~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 67 SNLSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFA-------VFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666665 34578888888888887775 678889999999999999999999998865
No 225
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.71 E-value=2.5e+02 Score=29.85 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=36.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 005939 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRL----------ALEQDVSRLQEQLQA 639 (668)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 639 (668)
.+|+.+...-..++..|..=....+.|.+.+||||+.|.--+. |.=-+-++|.++||+
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3455555555556666666667778899999999887754332 223355666666665
No 226
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=26.40 E-value=1.3e+02 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCcchhhhhHHHHhhhCCCCCCChhhHHHHHHHH
Q 005939 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAY 262 (668)
Q Consensus 229 ~d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~ 262 (668)
.|+|..++..|.|+|.+|+|++|-++-.-+..|.
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci 151 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCI 151 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHh
Confidence 4899999999999999999999987766666665
No 227
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.11 E-value=2.4e+02 Score=24.83 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=27.0
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 005939 597 RIAKEARGNAILQASLERRKQALHE--RRLALEQDVSRLQEQL 637 (668)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 637 (668)
++++=|-+|--|+..+. |=+.|++ -|-+|=+.|+.|++||
T Consensus 45 evtr~A~EN~rL~ee~r-rl~~f~~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELR-RLQSFYVEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 44667777777777763 4555655 5677777777777764
No 228
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.84 E-value=2.4e+02 Score=29.54 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=4.3
Q ss_pred HHHhHHHHH
Q 005939 639 AERDLRAAL 647 (668)
Q Consensus 639 ~~~~~~~~~ 647 (668)
+=+|+|.++
T Consensus 211 k~~D~k~~~ 219 (243)
T cd07666 211 MQTDLRSAF 219 (243)
T ss_pred HHHHHHHHH
Confidence 334555554
No 229
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.75 E-value=2.6e+02 Score=23.66 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=44.2
Q ss_pred hHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHH
Q 005939 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQR 292 (668)
Q Consensus 237 lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~ 292 (668)
+||.+|+.|-..--+.+.-..|...+...+..+-..+=+.||.+.+|.....-|..
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 57888888888877777888888888888888877788888888888877544433
No 230
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.43 E-value=3.6e+02 Score=23.68 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (668)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (668)
-+.+++||+.+=.-|+..|..-.-....- ..++.+=+.|+..|--|.|........
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 46677788877777776664322111111 577778888888888888877655444
No 231
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.18 E-value=1.5e+02 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=15.5
Q ss_pred CcccccCCCCCCCCCCCCcccccccCc
Q 005939 538 SSAEKPVGKGTSSNFSAKRSAFWGRSN 564 (668)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (668)
.|.--+.-.+....-|+-| -+||-++
T Consensus 511 ~~VNGs~v~~~t~L~~GdR-iLwGnnH 536 (1714)
T KOG0241|consen 511 SCVNGSLVCSTTQLWHGDR-ILWGNNH 536 (1714)
T ss_pred eeecCceeccccccccCce-EEecccc
Confidence 3333333344445667778 8999775
No 232
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=24.79 E-value=1.9e+02 Score=33.18 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=45.9
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHHHHH
Q 005939 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (668)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eW 116 (668)
=+-|||+|-.+.|.|+.-.++... ..-+..+++.|+.+..-.. .+..+..|.|.. ..-......+.++.++++|
T Consensus 325 ~~dRy~~LF~~~llflsvs~rMs~-fIyegKlp~tG~iV~klEd---te~~~nafeis~--~ti~rIv~~c~~~~~l~~w 398 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPRMSG-FIYEGKLPTTGMIVTKLED---TENHRNAFEISG--STIERIVVSCNNQQDLQEW 398 (661)
T ss_pred hhhheeeeccceeeeeEeccccch-hhhccccccceeEEeehhh---hhcccccccccc--cchhheeeccCChHHHHHH
Confidence 358999999999998865544321 0111123444544433111 111222344421 1123466788999999999
Q ss_pred HHHHHH
Q 005939 117 KTALEL 122 (668)
Q Consensus 117 i~AL~~ 122 (668)
+.+++.
T Consensus 399 ve~ln~ 404 (661)
T KOG2070|consen 399 VEHLNK 404 (661)
T ss_pred HHHhhh
Confidence 999985
No 233
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.73 E-value=3.4e+02 Score=24.57 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALH 620 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (668)
|.+|.+....+..-|......|..|++.+..=.+++.
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~ 63 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVE 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777667777888888889999887775544443
No 234
>PRK06798 fliD flagellar capping protein; Validated
Probab=24.67 E-value=1.7e+02 Score=33.19 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=37.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
+..|+.....|+.||. .++..+|+|.+.|...=.|||.=+++||.|+
T Consensus 381 ~~~l~~~i~~l~~~~~-------~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 381 SKSIDNRVSKLDLKIT-------DIDTQNKQKQDNIVDKYQKLESTLAALDSQL 427 (440)
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666654 5777888999999999999999999999998
No 235
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.29 E-value=7.4e+02 Score=25.32 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=33.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhcchhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 579 EEELAIQRLEITKNDLRHRIAKEARGNAIL-----------QASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
....+|.+|+..-..|+.||.+--++-+.. |-...+|-..+=.||..+|+.+.+|..|+..
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~n 86 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFN 86 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889888888888884321111111 1112223222335566677777776666543
No 236
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.20 E-value=1.2e+02 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
..++||.+.|.++...|+++..+|++|+..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888764
No 237
>PRK11239 hypothetical protein; Provisional
Probab=23.34 E-value=99 Score=31.61 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005939 617 QALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
.+|.+|=-+||++|+.|+.+|+.
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~ 208 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777778888888888888875
No 238
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.94 E-value=1.4e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
.-|++|+..|.+....|+++++.|++|+..
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888888888887754
No 239
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=22.84 E-value=1.6e+02 Score=27.94 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 005939 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQD 629 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (668)
|+.++-||.+..-|..-|.+--...+..|+..+.|..+|.+-|..|+++
T Consensus 20 e~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 68 (135)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456667777666666666555556666666666777777776666665
No 240
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.83 E-value=5e+02 Score=26.47 Aligned_cols=61 Identities=23% Similarity=0.393 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhHHHHHHHH--------HHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 581 ELAIQRLEITKNDLRHRIA--------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
|..+++||..-..++..|. ........|. .||++=+.+..+-+.+|..+.+|+.|+..-|.
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~-~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELR-YLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555551 1222333444 78888888888888888888888766655443
No 241
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.68 E-value=3.2e+02 Score=33.41 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHH---HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005939 581 ELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (668)
|..|++||..+.+++.+. .++.+.-..++..|+++.+.|.++|..+.++..+-.+++-++-.-.+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 242
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=22.44 E-value=4.1e+02 Score=28.69 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=38.6
Q ss_pred HHhhhhhHHHHHHHH-----------HHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (668)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (668)
.+||..+..|++||. .-||||..|++-|+= -+.||.-=..|.+.++.+-+
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L-~~~L~~eI~~f~~~l~~~~~ 105 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL-TKDLRREIDSFDERLEEAAE 105 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999992 568999999998864 34566666666666666655
No 243
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=22.28 E-value=88 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=33.0
Q ss_pred cCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhHHHHhhhCCC
Q 005939 198 VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPS 247 (668)
Q Consensus 198 ~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPe 247 (668)
.+|-|+++|+.. +..+.+.|.- .+.. .+.+++|+++-..|..+|.
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~---~l~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGL---DLPE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS----TTT-TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecCC-HHHHHHHHCc---CCCc-cchhhHHHHHHHHcCCCCC
Confidence 468899999875 6677777764 3333 5788999999999999886
No 244
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.19 E-value=2e+02 Score=32.13 Aligned_cols=39 Identities=36% Similarity=0.483 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHhhhc
Q 005939 614 RRKQALHERRLALE-------QDVSRLQEQLQAERDLRAALEVGLS 652 (668)
Q Consensus 614 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (668)
.|.+.+.-+|.|-| ...--|||||++||-+++.||--|.
T Consensus 420 ~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~ 465 (542)
T KOG0993|consen 420 QRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLD 465 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 3455799999999999999986653
No 245
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.00 E-value=2.8e+02 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
+++.++.+++.+++++.-|.+-+..-++++.
T Consensus 230 ~~~~le~~~~~~ee~~~~L~ekme~e~~~~~ 260 (297)
T PF02841_consen 230 QEQMLEQQERSYEEHIKQLKEKMEEEREQLL 260 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444433333
No 246
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.00 E-value=3e+02 Score=31.28 Aligned_cols=67 Identities=27% Similarity=0.278 Sum_probs=43.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHh-------hcchhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005939 579 EEELAIQRLEITKNDLRHRIAKEA-------RGNAILQAS-------LERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (668)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (668)
+-|.+-+-+|.....||.++.|=+ -.|..|++. |++-++.+.+-+.+.+..+..||||| |||-
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl---rDlm 448 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL---RDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHh
Confidence 345666667777777777774322 235555554 44445556667788999999999998 4554
Q ss_pred HHHH
Q 005939 645 AALE 648 (668)
Q Consensus 645 ~~~~ 648 (668)
.-||
T Consensus 449 f~le 452 (493)
T KOG0804|consen 449 FFLE 452 (493)
T ss_pred eehh
Confidence 4443
No 247
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.58 E-value=1.5e+02 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
-|++|++.|.+....|+++.+.+++|++.
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655543
No 248
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=21.48 E-value=4.3e+02 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred chhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 605 NAILQASLERRKQALHERR---LALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
.+.|+..++.|+++..+++ ..|++++.+.++..++=+..+.-|+.-+
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il 161 (779)
T PRK11091 112 IAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFL 161 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777665554 4577777766554444333333444444
No 249
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=21.22 E-value=2.3e+02 Score=28.33 Aligned_cols=51 Identities=29% Similarity=0.328 Sum_probs=32.8
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
|.++|+.-++|+.++.+-.+.=.-||-..|.+++-+.+ -.++.+|.|+|-.
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~--------~ne~~~~v~~e~s 188 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDK--------YNELREQVQKESS 188 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHh
Confidence 44677777777777776666666667666666665433 2466666666644
No 250
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.10 E-value=3.1e+02 Score=33.58 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=11.0
Q ss_pred cChHHHHHHHHHHHHHH
Q 005939 108 ETSEDLYEWKTALELAL 124 (668)
Q Consensus 108 eS~eE~~eWi~AL~~ai 124 (668)
.+..+...|+..+..+.
T Consensus 38 ~~~~~i~~~l~~~~e~~ 54 (782)
T PRK00409 38 TDFEEVEELLEETDEAA 54 (782)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45667777777766554
No 251
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.78 E-value=2.8e+02 Score=31.59 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhHHHHHHh
Q 005939 632 RLQEQLQAERDLRAALEV 649 (668)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~ 649 (668)
.|..||+.||+||+-++-
T Consensus 546 slekql~~ErklR~~~qk 563 (641)
T KOG3915|consen 546 SLEKQLAMERKLRAIVQK 563 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666665543
No 252
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.63 E-value=4.1e+02 Score=24.76 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=34.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (668)
.+.+...-..|+.....=.......+++.+.||+.|....-.+++-+..|.+|
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666655555666777777777777777777777777766665
No 253
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.58 E-value=3.2e+02 Score=35.13 Aligned_cols=41 Identities=39% Similarity=0.546 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005939 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (668)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (668)
.+++.++++.+.|.+.+-++++...+|.++|.+=+++...|
T Consensus 841 ~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 841 QLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555555555555555555555555555
No 254
>PRK13694 hypothetical protein; Provisional
Probab=20.57 E-value=1.3e+02 Score=26.26 Aligned_cols=40 Identities=38% Similarity=0.506 Sum_probs=29.5
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhcch----hhhhhHHHHHHHHHHH
Q 005939 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~ 622 (668)
-|+|||.-|.++...| --|||+|- +|-.=+-.||+.=++|
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~~er 66 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDER 66 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCHhHH
Confidence 4899999999999888 45889883 5555566676655554
No 255
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=20.51 E-value=2.2e+02 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE 621 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (668)
-.+||..|.+++.+|.+|- |.-|+.|-..|.|
T Consensus 17 k~kLd~Kk~Eil~~ln~EY------~kiLk~r~~~lEe 48 (56)
T PF08112_consen 17 KSKLDEKKSEILSNLNMEY------EKILKQRRKELEE 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3578899999999998874 3445555555554
No 256
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=20.51 E-value=6.2e+02 Score=23.60 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=45.0
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHhhcchhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005939 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQA------SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (668)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (668)
..+.+...+++-.....++..|. |...++++ +.+.-++.+...-.+..++++.|+.+|...|..|.-
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~---k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSIL---KSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888877777777775 33344443 333334445555557778899999999998888763
No 257
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.45 E-value=1.6e+02 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
..|++|+..|..+...|+++..++++|++.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888764
No 258
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.37 E-value=1.6e+02 Score=33.73 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=35.6
Q ss_pred HhhhhhHHHHHHHHHHhhcchhhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 586 RLEITKNDLRHRIAKEARGNAILQ---ASLERRKQALHERRLALEQDVSRLQ 634 (668)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (668)
|.-..|.-+|+-|.|--..|++|| .+|...-+.+++-|++||-..+.|+
T Consensus 681 ~v~k~kkaiq~~irknkeaNtVLaRLNseLqqqlkdv~~Erisle~qlEqlR 732 (737)
T KOG1955|consen 681 RVTKIKKAIQHVIRKNKEANTVLARLNSELQQQLKDVSDERISLETQLEQLR 732 (737)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445567778888887777788876 4677777788888888876655443
No 259
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.22 E-value=1.7e+02 Score=25.88 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
+.+++.|++++..|++..++|+..++
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~ 97 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIK 97 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999987665
No 260
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.04 E-value=1.3e+02 Score=37.07 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=4.8
Q ss_pred CCcEEEEEEEe
Q 005939 35 KSWKKRWFILT 45 (668)
Q Consensus 35 k~WKKRWFVL~ 45 (668)
.+|..|-|+..
T Consensus 1079 g~~~dr~~IFS 1089 (1516)
T KOG1832|consen 1079 GNRRDRQFIFS 1089 (1516)
T ss_pred cCcccchhhHh
Confidence 44544444443
No 261
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.03 E-value=5.9e+02 Score=25.96 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=48.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005939 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (668)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (668)
++-+|=|.+..-|+.|+-+|++.=..-| ..|-++...=.||=||||-|+.+.+..--.|-.+|-
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq 95 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQ 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899988885322211 226677777789999999999999999888988884
Done!