Query 005939
Match_columns 668
No_of_seqs 468 out of 2419
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 11:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 7.4E-42 2.5E-46 343.8 16.0 203 154-375 8-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 8.2E-42 2.8E-46 340.0 15.3 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 1.2E-41 4.2E-46 340.9 15.2 198 161-377 8-207 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 3.4E-41 1.2E-45 342.4 15.7 208 155-376 11-223 (229)
5 1tx4_A P50-rhogap; complex (GT 100.0 6.3E-41 2.2E-45 333.1 15.0 193 159-372 2-198 (198)
6 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.7E-40 5.9E-45 330.9 17.2 192 163-372 6-202 (202)
7 3fk2_A Glucocorticoid receptor 100.0 8.8E-41 3E-45 342.9 15.4 197 159-374 47-245 (246)
8 1f7c_A Rhogap protein; GTPase 100.0 9E-41 3.1E-45 339.8 14.4 194 164-376 17-220 (231)
9 1ow3_A RHO-GTPase-activating p 100.0 7.2E-40 2.5E-44 335.3 15.0 197 159-376 38-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 1.4E-39 4.9E-44 327.7 12.1 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.1E-38 3.9E-43 323.7 16.7 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 9E-38 3.1E-42 311.2 16.4 190 168-374 4-196 (201)
13 3eap_A RHO GTPase-activating p 100.0 1.9E-37 6.4E-42 322.5 14.9 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 4.4E-36 1.5E-40 334.3 15.0 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 4.6E-37 1.6E-41 308.8 3.4 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 4.3E-32 1.5E-36 293.4 15.6 141 179-327 198-338 (366)
17 1x1f_A Signal-transducing adap 99.7 2.3E-17 8E-22 156.4 14.6 96 16-125 15-113 (149)
18 1v88_A Oxysterol binding prote 99.7 1.3E-17 4.3E-22 154.7 12.5 103 15-129 4-128 (130)
19 1wi1_A Calcium-dependent activ 99.7 1.4E-17 4.6E-22 152.7 9.9 98 16-127 5-112 (126)
20 2rsg_A Collagen type IV alpha- 99.7 3.3E-17 1.1E-21 142.0 9.5 92 19-123 1-92 (94)
21 1wgq_A FYVE, rhogef and PH dom 99.7 7.9E-17 2.7E-21 143.2 9.8 102 15-129 4-107 (109)
22 1v89_A Hypothetical protein KI 99.7 2.7E-16 9.4E-21 140.7 13.2 104 15-129 4-116 (118)
23 1dyn_A Dynamin; signal transdu 99.7 2.1E-16 7.2E-21 143.5 12.1 100 18-123 11-115 (125)
24 1pls_A Pleckstrin homology dom 99.7 2.5E-16 8.5E-21 140.8 12.1 98 17-127 3-103 (113)
25 2p0d_A RHO GTPase-activating p 99.7 1.2E-16 4.2E-21 147.5 10.3 112 14-127 7-126 (129)
26 1v5u_A SBF1, SET binding facto 99.7 1.6E-16 5.4E-21 142.4 10.2 102 14-129 3-115 (117)
27 2da0_A 130-kDa phosphatidylino 99.7 3.3E-16 1.1E-20 140.9 12.2 102 12-129 3-105 (114)
28 2w2x_D 1-phosphatidylinositol- 99.7 3.7E-17 1.3E-21 149.9 5.5 108 14-127 7-121 (124)
29 2dhk_A TBC1 domain family memb 99.7 2.9E-16 9.8E-21 142.5 11.4 98 15-126 4-105 (119)
30 2cod_A Centaurin-delta 1; ARF 99.7 5.5E-16 1.9E-20 139.1 12.9 98 14-127 3-101 (115)
31 2i5f_A Pleckstrin; PH domain, 99.7 8.2E-16 2.8E-20 136.0 13.8 97 15-124 3-108 (109)
32 2yry_A Pleckstrin homology dom 99.7 1.6E-15 5.4E-20 137.1 15.5 100 13-125 16-120 (122)
33 1x05_A Pleckstrin; PH domain, 99.7 1E-15 3.4E-20 140.0 14.3 101 14-127 13-122 (129)
34 1fgy_A GRP1; PH domain, signal 99.7 6.6E-16 2.2E-20 140.2 13.0 102 17-129 3-124 (127)
35 2dn6_A KIAA0640 protein; PH do 99.7 7.1E-16 2.4E-20 137.7 12.9 100 14-127 3-105 (115)
36 2dkp_A Pleckstrin homology dom 99.7 1E-15 3.5E-20 139.5 13.9 102 11-125 13-119 (128)
37 1v5p_A Pleckstrin homology dom 99.6 6.5E-16 2.2E-20 142.4 12.2 104 15-128 11-123 (126)
38 2d9v_A Pleckstrin homology dom 99.6 4.7E-16 1.6E-20 143.4 11.3 109 14-126 3-115 (130)
39 1eaz_A Tandem PH domain contai 99.6 5.9E-16 2E-20 140.3 11.5 101 13-127 8-113 (125)
40 1unq_A RAC-alpha serine/threon 99.6 2.7E-16 9.1E-21 143.3 9.0 108 15-128 4-113 (125)
41 1fao_A Dual adaptor of phospho 99.6 8.6E-16 3E-20 139.9 12.2 101 13-127 12-114 (126)
42 1x1g_A Pleckstrin 2; PH domain 99.6 1.8E-15 6.2E-20 138.2 14.1 99 14-125 13-124 (129)
43 2lul_A Tyrosine-protein kinase 99.6 1.4E-15 4.7E-20 146.3 13.9 117 14-142 10-137 (164)
44 4a6h_A Phosphatidylinositol 4, 99.6 5.8E-16 2E-20 141.6 10.6 98 19-124 6-117 (120)
45 1upq_A PEPP1; PH domain, phosp 99.6 2.1E-15 7E-20 136.5 13.6 99 14-125 6-109 (123)
46 1btk_A Bruton'S tyrosine kinas 99.6 6.6E-16 2.3E-20 149.3 10.5 104 18-129 2-136 (169)
47 3a8p_A T-lymphoma invasion and 99.6 1.5E-17 5.2E-22 171.9 -1.5 109 15-128 7-127 (263)
48 1u5d_A SKAP55, SRC kinase-asso 99.6 1.9E-15 6.5E-20 132.9 12.1 98 18-126 2-106 (108)
49 3cxb_B Pleckstrin homology dom 99.6 1.2E-15 4.1E-20 137.3 10.9 95 21-126 2-102 (112)
50 1wjm_A Beta-spectrin III; PH d 99.6 7.5E-16 2.6E-20 140.1 9.0 110 15-129 4-121 (123)
51 1u5f_A SRC-associated adaptor 99.6 3.3E-15 1.1E-19 140.4 13.4 102 14-126 12-120 (148)
52 2d9x_A Oxysterol binding prote 99.6 8.5E-16 2.9E-20 139.3 9.0 101 15-127 4-106 (120)
53 2d9y_A Pleckstrin homology dom 99.6 3.2E-15 1.1E-19 133.8 12.6 99 14-125 6-109 (117)
54 3rcp_A Pleckstrin homology dom 99.6 1.6E-15 5.4E-20 133.3 9.9 95 21-127 1-95 (103)
55 2coc_A FYVE, rhogef and PH dom 99.6 1.5E-15 5.1E-20 137.2 9.8 100 16-126 5-107 (112)
56 1wg7_A Dedicator of cytokinesi 99.6 2E-15 6.8E-20 141.9 10.9 103 14-127 13-126 (150)
57 2y7b_A Actin-binding protein a 99.6 8.4E-16 2.9E-20 141.3 7.6 101 16-125 2-128 (134)
58 3aj4_A Pleckstrin homology dom 99.6 2.6E-15 8.8E-20 133.9 9.6 103 17-125 3-111 (112)
59 3pp2_A RHO GTPase-activating p 99.6 3E-15 1E-19 137.2 10.3 109 15-125 4-123 (124)
60 2rlo_A Centaurin-gamma 1; spli 99.6 5E-15 1.7E-19 135.9 11.5 106 17-126 2-125 (128)
61 2j59_M RHO-GTPase activating p 99.6 5.1E-15 1.8E-19 142.0 11.0 100 18-127 2-113 (168)
62 1dro_A Beta-spectrin; cytoskel 99.6 1.6E-15 5.6E-20 138.0 7.1 109 15-126 4-120 (122)
63 2cof_A Protein KIAA1914; PH do 99.6 2.8E-15 9.6E-20 133.1 8.3 97 15-125 4-101 (107)
64 1u5e_A SRC-associated adaptor 99.6 1E-14 3.4E-19 146.0 12.7 99 17-126 104-209 (211)
65 1btn_A Beta-spectrin; signal t 99.5 1.5E-14 5.2E-19 127.1 8.4 98 21-123 1-106 (106)
66 3tfm_A Myosin X; split PH doma 99.5 2.8E-14 9.6E-19 144.3 11.0 98 16-127 55-157 (228)
67 4h8s_A DCC-interacting protein 99.5 3.2E-14 1.1E-18 155.5 10.3 103 14-127 296-400 (407)
68 2dtc_A RAL guanine nucleotide 99.5 2.1E-13 7.3E-18 125.3 13.0 107 20-127 2-114 (126)
69 2r09_A Cytohesin-3; autoinhibi 99.5 1.1E-13 3.8E-18 148.4 12.1 103 18-131 212-334 (347)
70 2q13_A DCC-interacting protein 99.5 1.1E-13 3.7E-18 150.3 11.1 100 16-127 275-377 (385)
71 3lju_X ARF-GAP with dual PH do 99.5 1.5E-13 5.2E-18 149.3 12.2 98 15-126 265-373 (386)
72 1qqg_A IRS-1, insulin receptor 99.5 7.6E-14 2.6E-18 144.2 8.7 102 13-127 4-114 (264)
73 3tca_A Amyloid beta A4 precurs 99.4 8.2E-13 2.8E-17 137.0 10.5 100 18-125 167-276 (291)
74 2fjl_A 1-phosphatidylinositol- 99.3 4.6E-12 1.6E-16 119.0 11.9 105 20-126 2-149 (150)
75 2rov_A RHO-associated protein 99.3 1.5E-12 5.1E-17 118.4 7.6 99 21-125 3-115 (117)
76 3lju_X ARF-GAP with dual PH do 99.3 4E-12 1.4E-16 138.2 9.6 95 19-124 146-245 (386)
77 2ys3_A UNC-112-related protein 99.2 3.1E-11 1.1E-15 111.4 10.0 98 19-124 9-111 (137)
78 3a8n_A TIAM-1, T-lymphoma inva 99.2 6.6E-12 2.3E-16 130.1 6.0 106 15-125 7-124 (279)
79 4ejn_A RAC-alpha serine/threon 99.2 2E-11 6.8E-16 134.1 9.9 104 17-126 4-109 (446)
80 2d9w_A Docking protein 2; PH d 99.2 7.2E-11 2.5E-15 107.1 11.1 102 14-125 7-121 (127)
81 1w1g_A HPDK1, 3-phosphoinositi 99.1 4.1E-10 1.4E-14 105.7 10.9 94 14-126 47-140 (151)
82 3hk0_A Growth factor receptor- 99.1 5.8E-10 2E-14 114.3 12.5 107 16-125 129-240 (256)
83 4gmv_A RAS-associated and plec 99.0 4.9E-10 1.7E-14 116.2 10.4 101 17-125 156-266 (281)
84 4f7h_A Fermitin family homolog 98.9 3.6E-09 1.2E-13 100.1 9.9 98 21-125 49-150 (173)
85 4bbk_A Kindlin-1, fermitin fam 98.9 5.6E-09 1.9E-13 97.7 9.3 98 21-125 28-129 (165)
86 2coa_A Protein kinase C, D2 ty 98.6 1.8E-07 6E-12 84.8 10.1 98 14-125 3-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 6.5E-07 2.2E-11 81.3 11.4 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.9 0.0002 7E-09 65.2 13.6 106 14-126 13-131 (136)
89 3tfm_A Myosin X; split PH doma 97.8 4.3E-05 1.5E-09 76.8 7.9 40 17-58 19-58 (228)
90 2lg1_A A-kinase anchor protein 97.5 0.0004 1.4E-08 67.7 10.6 109 16-129 68-176 (185)
91 3ml4_A Protein DOK-7; tyrosine 97.5 0.00028 9.5E-09 70.0 8.4 101 16-126 6-114 (224)
92 3p6a_A RHO guanine nucleotide 97.1 0.0035 1.2E-07 67.0 12.6 110 15-127 255-373 (377)
93 3t06_A PDZ-rhogef, RHO guanine 97.0 0.0033 1.1E-07 68.2 12.2 111 16-129 292-412 (418)
94 3odw_A RHO guanine nucleotide 97.0 0.0029 9.9E-08 71.3 11.8 113 15-130 408-529 (536)
95 1v61_A RAC/CDC42 guanine nucle 96.9 0.0034 1.2E-07 57.8 8.8 88 36-129 43-130 (132)
96 1zc3_B Exocyst complex protein 96.6 0.014 4.9E-07 52.1 10.6 103 14-125 3-107 (113)
97 1xcg_A PDZ-rhogef, RHO guanine 96.4 0.02 6.9E-07 60.8 12.6 109 16-127 250-368 (368)
98 1txd_A RHO guanine nucleotide 96.4 0.0076 2.6E-07 64.7 9.1 109 16-128 254-372 (385)
99 3mpx_A FYVE, rhogef and PH dom 96.2 0.017 5.7E-07 62.9 10.6 100 14-127 239-339 (434)
100 1nty_A Triple functional domai 96.0 0.046 1.6E-06 56.8 12.3 107 18-127 202-310 (311)
101 1dbh_A Protein (human SOS 1); 95.9 0.051 1.7E-06 57.4 12.6 103 15-126 243-350 (354)
102 1mai_A Phospholipase C delta-1 95.8 0.052 1.8E-06 49.5 10.1 39 88-127 85-123 (131)
103 3zvr_A Dynamin-1; hydrolase, D 95.7 0.048 1.7E-06 63.8 11.9 100 18-123 539-643 (772)
104 2rgn_B RHOA/RAC/CDC42 exchange 95.5 0.07 2.4E-06 56.6 11.4 109 17-126 205-319 (354)
105 2pz1_A RHO guanine nucleotide 95.5 0.16 5.4E-06 55.7 14.6 104 16-127 331-442 (466)
106 2vrw_B P95VAV, VAV1, proto-onc 95.3 0.14 4.7E-06 55.2 13.1 99 18-127 233-337 (406)
107 3qwm_A Iqsec1, IQ motif and SE 95.2 0.1 3.5E-06 48.3 10.2 105 17-125 11-122 (140)
108 2dfk_A Collybistin II; DH doma 95.2 0.15 5E-06 55.1 13.1 105 15-127 253-365 (402)
109 1kz7_A Guanine nucleotide exch 95.1 0.21 7.2E-06 52.8 13.6 108 18-127 209-327 (353)
110 2z0q_A XPLN, RHO guanine nucle 94.6 0.16 5.6E-06 53.3 11.2 100 15-124 228-345 (346)
111 3ky9_A Proto-oncogene VAV; cal 93.7 0.23 8E-06 56.2 10.7 97 19-126 406-508 (587)
112 3v5w_A G-protein coupled recep 93.1 0.27 9.4E-06 56.8 10.1 99 14-127 554-654 (689)
113 3jzy_A Intersectin 2; C2 domai 93.0 0.018 6.1E-07 63.8 0.0 102 17-127 251-364 (510)
114 3ksy_A SOS-1, SON of sevenless 92.5 0.25 8.5E-06 60.0 9.1 104 16-127 441-548 (1049)
115 1foe_A T-lymphoma invasion and 88.9 2.1 7.3E-05 45.2 11.3 26 100-125 341-366 (377)
116 2pnv_A Small conductance calci 82.4 1.8 6.1E-05 31.8 4.4 32 608-639 10-41 (43)
117 3o0z_A RHO-associated protein 81.1 3.7 0.00013 38.9 7.4 32 614-645 55-86 (168)
118 2oxj_A Hybrid alpha/beta pepti 80.0 3 0.0001 28.7 4.5 28 611-638 5-32 (34)
119 3c3g_A Alpha/beta peptide with 78.8 3.2 0.00011 28.4 4.4 28 611-638 4-31 (33)
120 3c3f_A Alpha/beta peptide with 78.3 3.7 0.00013 28.2 4.5 28 611-638 5-32 (34)
121 2fxo_A Myosin heavy chain, car 77.2 9.2 0.00031 34.5 8.6 32 613-644 33-64 (129)
122 3m48_A General control protein 76.8 3.1 0.00011 28.6 3.9 28 611-638 4-31 (33)
123 1kd8_A GABH AIV, GCN4 acid bas 76.3 4.1 0.00014 28.4 4.4 28 611-638 5-32 (36)
124 1kd8_B GABH BLL, GCN4 acid bas 74.5 4.8 0.00017 28.1 4.4 28 611-638 5-32 (36)
125 3o0z_A RHO-associated protein 74.2 5.9 0.0002 37.5 6.6 57 583-639 42-115 (168)
126 1uo4_A General control protein 73.8 4.1 0.00014 28.1 3.9 28 611-638 5-32 (34)
127 2hy6_A General control protein 72.6 5.9 0.0002 27.3 4.4 27 611-637 5-31 (34)
128 3ol1_A Vimentin; structural ge 72.5 16 0.00053 32.6 8.7 64 587-650 18-91 (119)
129 2wq1_A General control protein 70.2 7.4 0.00025 26.6 4.4 27 611-637 4-30 (33)
130 2bni_A General control protein 68.6 5.6 0.00019 27.4 3.6 28 611-638 5-32 (34)
131 3v6i_B V-type ATP synthase, su 65.7 23 0.0008 30.5 7.8 58 580-637 15-73 (105)
132 1z87_A Alpha-1-syntrophin; pro 65.4 7.8 0.00027 39.3 5.8 37 87-125 225-262 (263)
133 3na7_A HP0958; flagellar bioge 63.8 30 0.001 34.6 9.8 69 583-651 105-173 (256)
134 1fho_A UNC-89; pleckstrin homo 57.7 27 0.00091 31.0 7.2 83 37-124 25-111 (119)
135 3hie_A Protein PSL1, exocyst c 56.8 52 0.0018 31.2 9.3 83 36-127 63-150 (171)
136 2ke4_A CDC42-interacting prote 56.5 11 0.00037 32.6 4.3 30 620-649 14-43 (98)
137 2fxo_A Myosin heavy chain, car 54.8 72 0.0024 28.5 9.7 65 581-649 40-104 (129)
138 3he4_A Synzip6; heterodimeric 52.5 5.2 0.00018 29.4 1.3 40 592-635 6-45 (56)
139 2dfs_A Myosin-5A; myosin-V, in 52.1 15 0.00053 44.5 6.2 29 584-612 923-951 (1080)
140 2adz_A Alpha-1-syntrophin; pro 51.9 16 0.00053 35.0 4.9 37 87-125 140-177 (178)
141 3a58_A Exocyst complex compone 50.1 58 0.002 33.5 9.0 84 34-126 131-219 (320)
142 2eqb_B RAB guanine nucleotide 49.8 37 0.0013 29.1 6.4 23 620-642 46-68 (97)
143 2w83_C C-JUN-amino-terminal ki 45.3 24 0.00082 28.9 4.3 49 586-638 27-75 (77)
144 4f61_I Stathmin-like domain R4 44.5 56 0.0019 32.5 7.7 50 599-648 127-187 (240)
145 3oja_B Anopheles plasmodium-re 44.0 40 0.0014 37.4 7.6 16 628-643 544-559 (597)
146 2r2v_A GCN4 leucine zipper; co 44.0 38 0.0013 23.4 4.4 26 612-637 6-31 (34)
147 4etp_A Kinesin-like protein KA 42.2 32 0.0011 36.9 6.2 41 611-651 14-54 (403)
148 3cve_A Homer protein homolog 1 41.9 66 0.0022 26.1 6.4 29 613-641 6-34 (72)
149 3f1i_H Hepatocyte growth facto 40.3 57 0.0019 27.9 6.0 38 608-649 46-83 (98)
150 3pk1_B Apoptosis regulator BAX 39.9 12 0.0004 25.9 1.4 15 596-610 17-31 (34)
151 3viq_B Mating-type switching p 39.5 22 0.00076 29.8 3.4 29 609-637 3-31 (85)
152 3oja_B Anopheles plasmodium-re 39.4 85 0.0029 34.7 9.4 8 622-629 545-552 (597)
153 3swy_A Cyclic nucleotide-gated 39.3 67 0.0023 23.8 5.6 41 579-619 2-42 (46)
154 1wt6_A Myotonin-protein kinase 39.1 78 0.0027 26.2 6.5 50 590-639 11-70 (81)
155 4f6r_C Stathmin-like domain R1 38.7 67 0.0023 27.0 6.1 34 614-647 49-83 (87)
156 3bas_A Myosin heavy chain, str 38.4 83 0.0028 26.3 6.9 23 613-635 62-84 (89)
157 3ljm_A Coil Ser L9C; de novo d 38.3 46 0.0016 21.7 3.9 26 625-650 5-30 (31)
158 1joc_A EEA1, early endosomal a 37.8 48 0.0016 29.6 5.7 20 618-637 8-27 (125)
159 3twe_A Alpha4H; unknown functi 37.1 36 0.0012 21.6 3.2 22 626-650 6-27 (27)
160 3ulb_A Target of rapamycin com 36.7 1.9E+02 0.0064 25.8 9.1 84 37-125 27-114 (121)
161 2ocy_A RAB guanine nucleotide 36.0 1.1E+02 0.0037 28.5 7.8 33 619-651 49-81 (154)
162 2xus_A Breast cancer metastasi 35.7 44 0.0015 25.1 4.1 30 613-642 5-34 (49)
163 3ol1_A Vimentin; structural ge 35.5 1.2E+02 0.0041 26.7 7.8 56 584-639 43-101 (119)
164 3swk_A Vimentin; cytoskeleton, 34.5 89 0.003 26.0 6.4 49 592-651 3-51 (86)
165 2zkm_X 1-phosphatidylinositol- 33.7 71 0.0024 37.4 7.7 38 89-126 97-136 (799)
166 3qr0_A Phospholipase C-beta (P 31.9 1.4E+02 0.0046 35.2 9.6 25 101-125 118-142 (816)
167 2dfs_A Myosin-5A; myosin-V, in 31.7 1.3E+02 0.0043 36.6 9.6 42 596-637 998-1039(1080)
168 1fmh_B General control protein 31.6 65 0.0022 21.3 3.9 24 612-635 6-29 (33)
169 3cvf_A Homer-3, homer protein 31.0 76 0.0026 26.2 5.2 22 617-638 16-37 (79)
170 4e61_A Protein BIM1; EB1-like 30.0 70 0.0024 27.9 5.1 36 604-643 5-43 (106)
171 2e7s_A RAB guanine nucleotide 29.3 75 0.0026 28.9 5.4 31 621-651 39-69 (135)
172 3na7_A HP0958; flagellar bioge 28.0 2.5E+02 0.0086 27.7 9.8 30 581-610 59-94 (256)
173 2p22_A Suppressor protein STP2 27.1 2.2E+02 0.0074 27.0 8.4 59 580-638 10-80 (174)
174 1cxz_B Protein (PKN); protein- 26.9 2.2E+02 0.0074 23.8 7.4 26 578-603 14-39 (86)
175 1r8e_A Multidrug-efflux transp 26.0 1.1E+02 0.0037 30.2 6.7 42 612-653 77-118 (278)
176 3tnu_A Keratin, type I cytoske 25.7 3.2E+02 0.011 24.2 9.0 11 641-651 111-121 (131)
177 4emc_A Monopolin complex subun 25.0 1.5E+02 0.0052 28.3 6.9 32 613-644 40-71 (190)
178 3swf_A CGMP-gated cation chann 25.0 1.2E+02 0.0041 24.7 5.3 36 580-615 5-40 (74)
179 1fmh_A General control protein 23.8 1.2E+02 0.004 20.1 4.0 12 623-634 17-28 (33)
180 3u06_A Protein claret segregat 23.7 1E+02 0.0034 33.2 6.2 30 591-620 12-41 (412)
181 3gp4_A Transcriptional regulat 23.4 1.6E+02 0.0056 26.4 6.7 42 610-651 77-118 (142)
182 3i00_A HIP-I, huntingtin-inter 23.1 2.6E+02 0.0089 24.7 7.7 54 581-638 25-78 (120)
183 2ve7_A Kinetochore protein HEC 22.8 45 0.0015 34.6 3.1 50 576-625 165-214 (315)
184 3a98_B Engulfment and cell mot 22.8 3.4E+02 0.012 26.0 9.2 36 89-126 116-151 (203)
185 2jee_A YIIU; FTSZ, septum, coi 21.7 3.4E+02 0.012 22.4 7.8 61 582-646 13-74 (81)
186 1fxk_C Protein (prefoldin); ar 21.5 98 0.0034 27.4 4.7 29 610-638 91-119 (133)
187 1deq_A Fibrinogen (alpha chain 21.3 1E+02 0.0034 32.7 5.3 101 209-325 67-168 (390)
188 3ohm_B 1-phosphatidylinositol- 21.0 1.7E+02 0.0058 34.7 7.8 25 101-125 115-139 (885)
189 2oqq_A Transcription factor HY 20.6 2.4E+02 0.0083 20.3 5.5 30 610-639 6-35 (42)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=343.77 Aligned_cols=203 Identities=26% Similarity=0.398 Sum_probs=177.3
Q ss_pred cccCCCCCCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCC--CC
Q 005939 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSA--DE 229 (668)
Q Consensus 154 ~~k~~~~~~~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~--~~ 229 (668)
.++.++..+.++||+||..++.. +..||.+|.+|+.||+++|+.+|||||++|+..+|++|+..+++|. ..+.. ..
T Consensus 8 ~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 87 (214)
T 3byi_A 8 TLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWE 87 (214)
T ss_dssp HHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGC
T ss_pred hHHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCccccc
Confidence 34555667788999999999975 5679999999999999999999999999999999999999999985 33322 25
Q ss_pred CcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 005939 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (668)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkM 309 (668)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|
T Consensus 88 dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM 166 (214)
T 3byi_A 88 DIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLM 166 (214)
T ss_dssp SHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred chHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 9999999999999999999999999999999999989999999999977 599999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005939 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (668)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (668)
++.|||+||||+|||++.... + .+..+..++.+|++||+||+.||+++
T Consensus 167 ~~~NLa~vf~P~Ll~~~~~~~-----------~-------~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 167 STQSLGIVFGPTLLRAENETG-----------N-------MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CHHHHHHHHHHHHHCCTTSSS-----------C-------HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CHHHhHHHhccccCCCCCccH-----------H-------HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999873210 0 01223456889999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.2e-42 Score=340.04 Aligned_cols=196 Identities=24% Similarity=0.391 Sum_probs=173.3
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhH
Q 005939 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (668)
.+.++.+||++|..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 455678999999999975 5699999999999999999999999999999999999999999976556678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|++|++.|||++.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 9999999999999999999999999999999999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
||+|||++..... . .......+++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~--~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------E--LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------H--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------H--HHHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999842211 1 112234566778999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.2e-41 Score=340.92 Aligned_cols=198 Identities=22% Similarity=0.391 Sum_probs=175.1
Q ss_pred CCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcc-CC-CCCCcchhhhhH
Q 005939 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCV 238 (668)
Q Consensus 161 ~~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vA~lL 238 (668)
.+..+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|... +. ...|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 3467999999999988788999999999999999999999999999999999999999998532 21 247999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.|||++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (668)
||+|+|++......+.+ +...+.+|++||+||+.||++++.
T Consensus 167 ~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 167 WPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred cccccCCCCccHHHHHH------------------hHHHHHHHHHHHHhhHHHcCCCCC
Confidence 99999987432211111 123568999999999999998763
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=342.38 Aligned_cols=208 Identities=20% Similarity=0.285 Sum_probs=167.6
Q ss_pred ccCCCCCCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCC----C
Q 005939 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD----E 229 (668)
Q Consensus 155 ~k~~~~~~~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~----~ 229 (668)
++.++..+.+|||+||..++.. +..||.+|.+|+.||+++|+ +|||||++|+...|++|++.|+.|....... .
T Consensus 11 ~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~ 89 (229)
T 3iug_A 11 RENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQ 89 (229)
T ss_dssp -------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTT
T ss_pred cCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccccccc
Confidence 4555666788999999998875 56799999999999999999 8999999999999999999999986433222 5
Q ss_pred CcchhhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 005939 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (668)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkM 309 (668)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|++|++.|||
T Consensus 90 dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 168 (229)
T 3iug_A 90 DIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNM 168 (229)
T ss_dssp CHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred chHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCC
Confidence 9999999999999999999999999999999999999999999999976 699999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
++.|||+||||+|||++..... .. ...+.+......+.+|++||+||+.||+++.
T Consensus 169 ~~~NLAivf~P~Ll~~~~~~~~------~~------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 169 HAKNLAIVWAPNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRI 223 (229)
T ss_dssp CHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC---
T ss_pred ChHHHHHHHhccccCCCccccc------cc------chHHHHHHHHHHHHHHHHHHHhHHHhCCCcH
Confidence 9999999999999998732100 00 0012233345567899999999999999876
No 5
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=6.3e-41 Score=333.08 Aligned_cols=193 Identities=25% Similarity=0.372 Sum_probs=170.0
Q ss_pred CCCCCcccccchHHHhhhCC---CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchh
Q 005939 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~v 234 (668)
++.+.++||+||..++++.. .||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|++|.. .+....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 45677899999999998743 799999999999999999999999999999999999999999964 33334689999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 005939 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (668)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (668)
|++||.|||+||+||||.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999998764 4578899999966 69999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 315 AivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~----------------~---~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA----------------A---ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH----------------H---HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc----------------c---ccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998621 0 112334567889999999999998
No 6
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=330.93 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=171.3
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-C-ccCC--CCCCcchhhhh
Q 005939 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vA~l 237 (668)
.++||+||..++.. ...||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|+++ . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 24699999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 005939 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (668)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (668)
||.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999977 59999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 318 fgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
|||+|+|++... . ++.+..+..++.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 2234455678899999999999998
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-41 Score=342.93 Aligned_cols=197 Identities=23% Similarity=0.428 Sum_probs=175.1
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCC--CCCCcchhhh
Q 005939 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGD 236 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~--~~~d~h~vA~ 236 (668)
...+..+||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...|++|++.|+.|..... .+.|||+||+
T Consensus 47 ~~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~ 126 (246)
T 3fk2_A 47 ATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAG 126 (246)
T ss_dssp --CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHH
T ss_pred cccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHH
Confidence 34457899999999998878899999999999999999999999999999999999999999863322 2469999999
Q ss_pred hHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhh
Q 005939 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (668)
Q Consensus 237 lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAi 316 (668)
+||.|||+||+||||+++|+.|+.+....+.++++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+||+.|||+
T Consensus 127 lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAi 205 (246)
T 3fk2_A 127 AMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSI 205 (246)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHH
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHH
Confidence 999999999999999999999999999999999999999977 5999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005939 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (668)
Q Consensus 317 vfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (668)
||||+|||+.... +..+..+..++.||++||+||+.||.+
T Consensus 206 vf~P~Llrp~~~~------------------~~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 206 CFWPTLMRPDFST------------------MDALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHCCCSSS------------------SCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HhcccccCCCCcc------------------HHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 9999999986321 112344556779999999999999986
No 8
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=9e-41 Score=339.78 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=155.3
Q ss_pred cccccchHHHhhhCC----CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHH-HHhcCC---ccCC--CCCCcch
Q 005939 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (668)
Q Consensus 164 ~vFG~pL~~ll~~~~----~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~-~ld~g~---~~~~--~~~d~h~ 233 (668)
+|||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .+|.|. ..+. ...|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 399999998887533 36999999999999999999999999999999999987 478763 2332 2479999
Q ss_pred hhhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccc
Q 005939 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (668)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~N 313 (668)
||++||.|||+||+||||+++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+.|++.|||++.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999999999976 6999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 314 LAivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
||+||||+|||++...... +.....++.+|++||+||+.||+..+
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987322111 11234567899999999999999876
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=7.2e-40 Score=335.33 Aligned_cols=197 Identities=24% Similarity=0.369 Sum_probs=169.9
Q ss_pred CCCCCcccccchHHHhhhCC---CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCCCCcchh
Q 005939 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~d~h~v 234 (668)
.+.+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|++|.. .+....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999998643 799999999999999999999999999999999999999999964 33334699999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 005939 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (668)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (668)
|++||.|||+||+||||.++|+.|+.+... +.++++..++.+| .+||+.|+.+|+||+.||++|++|++.|||++.||
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999998765 4578899999966 69999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 315 AivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 196 Aivf~P~Ll~~~~~----------------~---~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 196 AVVFGPNLLWAKDA----------------A---ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHCCCSSH----------------H---HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhhcchhCCCCCc----------------c---ccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999998621 0 1123345678899999999999998765
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.4e-39 Score=327.66 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=158.9
Q ss_pred CcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-ccCCCCCCcchhhhhH
Q 005939 163 SLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (668)
Q Consensus 163 ~~vFG~pL~~ll~~~---~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lL 238 (668)
+.+||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+..+ ++|++.|++|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 458999999999863 579999999999999999999999999999999 99999999984 3334567999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHc--cCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~-~~~~~~ri~~l~~lI~~--~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLA 315 (668)
|.|||+||+||||.++|+.|+.+.+ ..+.++++..++.+| . +||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 677889999999966 6 89999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 316 ivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
+||||+|||++... .. . ...++.+|++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~-~~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------N-TENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------H-HHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------h-hHHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 1 15678999999999999999874
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=323.67 Aligned_cols=209 Identities=22% Similarity=0.338 Sum_probs=168.4
Q ss_pred CCCcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-CccCCCCCCcchhhhhH
Q 005939 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCV 238 (668)
Q Consensus 161 ~~~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~~~~~d~h~vA~lL 238 (668)
.+++|||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.++.+ ........|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 3467999999999875 567999999999999999999999999999999999999999875 34445678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+.+..+.++++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+||+.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI-MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 9999999999999999999999999888889999999977 599999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005939 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~--~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~I 371 (668)
||+|||+....... .++..+ ++.........+....-+..+|.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~s-~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKREN-SSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCCC-CCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987542211 111100 00000111223334445678999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=9e-38 Score=311.21 Aligned_cols=190 Identities=17% Similarity=0.253 Sum_probs=166.2
Q ss_pred cchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-cCCCC-CCcchhhhhHHHHhhh
Q 005939 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSAD-EDAHVIGDCVKHVLRE 244 (668)
Q Consensus 168 ~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~-~d~h~vA~lLK~fLRe 244 (668)
..|.+++.. ...||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|++|.. ..... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 456667664 56799999999999999999999999999999999999999999953 33334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccC
Q 005939 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (668)
Q Consensus 245 LPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr 324 (668)
||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+++ +.|||++.|||+||||+|||
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV-GELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 9999999999999999999999899999999977 599999999999999999999996 68999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005939 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (668)
Q Consensus 325 ~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (668)
++...+ . ..+.+..+..++.||++||+||+.||+.
T Consensus 162 ~~~~~~------------~---~~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 162 HAVPNP------------D---PVTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp CSSSSC------------C---HHHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCCCC------------C---HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 863211 0 1233456677889999999999999985
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=322.48 Aligned_cols=200 Identities=22% Similarity=0.294 Sum_probs=158.2
Q ss_pred CCCCCcccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchh
Q 005939 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (668)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~v 234 (668)
.+.++++||+||..+++. .+.||.+|.+|+.||++ |+.+|||||++|+...|++|++.||.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 445678999999998763 34699999999999975 799999999999999999999999999654 346799999
Q ss_pred hhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 005939 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (668)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (668)
|++||.|||+||+||||.++|+.|+.+.+.. .++++..++.++ ..||+.|+.+|+||+.||++|++|++.|+||+.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLLS-CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998874 467888888755 68999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 315 AivfgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
|+||||+|||++.... .+. .. ........+.+|++||+||+.||..+.
T Consensus 214 Aivf~P~Ll~~~~~~~-~~~----------~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KMS----------SN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TCC----------HH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-chh----------hh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999973211 111 11 122334567899999999999997665
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=4.4e-36 Score=334.32 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=170.6
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC--ccCC--CCCCcchhhhh
Q 005939 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (668)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~--~~~~--~~~d~h~vA~l 237 (668)
.++||++|..+++. ...||.+|.+|+.||+.+|+.+|||||++|+...|++|++.||.+. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999986 5679999999999999999999999999999999999999999853 2332 24699999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 005939 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (668)
Q Consensus 238 LK~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (668)
||.|||+||+||||.++|+.|+.+....+.++++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999977 59999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005939 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (668)
Q Consensus 318 fgP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF 372 (668)
|||+||+++..... +.+..+..++.||++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHH-----------------HHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999998743210 012234456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.6e-37 Score=308.83 Aligned_cols=192 Identities=18% Similarity=0.152 Sum_probs=141.4
Q ss_pred CCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhH
Q 005939 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (668)
Q Consensus 162 ~~~vFG~pL~~ll~~---~~~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (668)
..++||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 356999999999983 35799999999999999999999999999999 333 2222333468999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhh
Q 005939 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (668)
Q Consensus 239 K~fLReLPePLlp~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (668)
|.|||+||+||||.++|+.|+.+.+..+..+++. . ++.+||+.|+.+|+||+.||++|+++++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998765554444 3 45799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005939 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (668)
Q Consensus 319 gP~Llr~~~~~~~~ie~~~~~~g~~~~~~~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (668)
||+|||++..... .+.. ....+.+..+...+.+|++||+| .||+.+.
T Consensus 167 ~P~Ll~~~~~~~~---~~~~------~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---PPPG------GAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---cccc------cchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999999842100 0000 00011223345678999999976 5787653
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=4.3e-32 Score=293.43 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=129.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCccCCCCCCcchhhhhHHHHhhhCCCCCCChhhHHHH
Q 005939 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (668)
Q Consensus 179 ~VP~vl~~~i~~L~~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~~ 258 (668)
.||.+|.+|+.||+++|+.+|||||++|+..++++|++.|+.|..... ..|+|+||++||.|||+||+||||.++|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999965433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCCCC
Q 005939 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (668)
Q Consensus 259 i~~~~~~~~~~ri~~l~~lI~~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (668)
+.+... ...++.+| ..||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 277 ~~~~~~------~~~~~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYD------PRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTC------HHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhh------HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 998764 24577766 599999999999999999999999999999999999999999999984
No 17
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=2.3e-17 Score=156.40 Aligned_cols=96 Identities=20% Similarity=0.333 Sum_probs=74.4
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee---cCCceEEE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTV 92 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~fv 92 (668)
...++|+|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..++.+... ..+.++|.
T Consensus 15 ~~pv~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~---------~~g~I~L~~~~~~~~~~~~~~~~~~F~ 83 (149)
T 1x1f_A 15 ALPLYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSII---------YVDKLDIVDLTCLTEQNSTEKNCAKFT 83 (149)
T ss_dssp SSCEEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSS---------CSEECCCSSCCEEEECCCTTSCCCEEE
T ss_pred CCCccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCccc---------cCcEEECCCceEEeeccCCCCcCcEEE
Confidence 34499999666 7777789999999999999999999998765 3345666665543211 22346676
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
|... .++|+|+|+|.+|+++||.+|+.++.
T Consensus 84 I~t~---~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 84 LVLP---KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp EECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEcC---CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 5432 79999999999999999999999986
No 18
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=1.3e-17 Score=154.69 Aligned_cols=103 Identities=26% Similarity=0.381 Sum_probs=77.3
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-CCceEEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVL 93 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-~kk~~fvi 93 (668)
.+..|+|+|||+ |+| ..+.|++|||||+++.|+||+++.+.. +++.|.|..+....... .++++|.|
T Consensus 4 ~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~i 71 (130)
T 1v88_A 4 GSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ---------WVGTVLLNACEIIERPSKKDGFCFKL 71 (130)
T ss_dssp SSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCC---------CCEEEECSSCEECCCCTTTSSCEEEE
T ss_pred CCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCC---------ceEEEEcCCCEEEECCCCCCCeEEEE
Confidence 466789999776 667 789999999999999999999998755 45567777655432222 23478877
Q ss_pred ccCCC-C--------------------CceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 94 FPDGR-D--------------------GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 94 t~~~~-~--------------------gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
..... . .++|+|+|+|++|+++||.||+.|+...|.
T Consensus 72 ~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~~ 128 (130)
T 1v88_A 72 FHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128 (130)
T ss_dssp ECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred EcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 53211 0 245999999999999999999999975543
No 19
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.72 E-value=1.4e-17 Score=152.66 Aligned_cols=98 Identities=24% Similarity=0.360 Sum_probs=73.0
Q ss_pred CCcEEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEe----CCCCCCCCCCccceeeeCcEEcCCCcee--ee---ec
Q 005939 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSV--VV---RE 85 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYK----d~~~~~p~~~~e~~l~L~~I~L~~~~sv--~~---~~ 85 (668)
+.+..++|||+ |+|. .+|.||||||||+++.|+||+ ++.+.. +++.|.|..++.. .+ ..
T Consensus 5 p~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~---------p~G~I~L~g~tV~~~~~~~~~~ 73 (126)
T 1wi1_A 5 SSGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAE---------PQELLQLDGYTVDYTDPQPGLE 73 (126)
T ss_dssp CCCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSC---------CSEEEECSSCEEEECCCCSSCC
T ss_pred CCCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCC---------CceEEECCCcEEEEecCCcccc
Confidence 44679999777 5554 469999999999999999999 777666 3444555553321 01 12
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++++|.+... +++|+|+|++++||..||+||.+|+.++
T Consensus 74 ~~k~~F~~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 74 GGRAFFNAVKE---GDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp SCSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred cCceEEEEecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 45677755432 6789999999999999999999999754
No 20
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=141.96 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=70.7
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCC
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~ 98 (668)
|.|+|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.|.+..+..+ .....+++|.+...
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~~~-~~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAVIT-PHDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCEEE-ECSSCSSEEEEEET--
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceeeee-cCcccceeEEEEeC--
Confidence 67999776 778788999999999999999999987654321 3455666665443 23344556666542
Q ss_pred CCceEEEEecChHHHHHHHHHHHHH
Q 005939 99 DGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 99 ~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
+|+|+|+|+|++|+++||.||+.|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999986
No 21
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.68 E-value=7.9e-17 Score=143.23 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--CCceEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTV 92 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~fv 92 (668)
.+..++++|||+ |++...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... .++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~---------~~~~i~L~~~~~~~~~~~~~~~~~F~ 72 (109)
T 1wgq_A 4 GSSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVA---------ALESQPLLGFTVTLVKDENSESKVFQ 72 (109)
T ss_dssp CCCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSS---------CSEEEECSSEEEEECCCSSCSSSEEE
T ss_pred CCCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCc---------cCceEECCCCEEEECCCCCCCCcEEE
Confidence 455678999777 5666689999999999999999999987655 34456666655433322 2446777
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
|.. .++++|+|+|+|++++.+|+.+|+.++...|+
T Consensus 73 i~~--~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~~~ 107 (109)
T 1wgq_A 73 LLH--KGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107 (109)
T ss_dssp EEE--TTEEEEEEECSSHHHHHHHHHHHHHHHSCCCC
T ss_pred EEe--CCCeEEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 653 23688999999999999999999999865543
No 22
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=2.7e-16 Score=140.74 Aligned_cols=104 Identities=22% Similarity=0.385 Sum_probs=78.6
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee----ecCCceE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKLL 90 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~----~~~kk~~ 90 (668)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~~ 72 (118)
T 1v89_A 4 GSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK---------PQGCMYLPGCTIKEIATNPEEAGKFV 72 (118)
T ss_dssp SSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCS---------CSEEECSTTEEEEEECCCSSCCCCCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCC---------ceEEEECCCCEEEEcCcCcccCCcce
Confidence 346789999776 6676789999999999999999999987654 344456655443322 1234567
Q ss_pred EEEccCC-----CCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 91 TVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 91 fvit~~~-----~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
|.|.+.. ...++|+|+|+|.+|+.+|+.+|+.++...|+
T Consensus 73 f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp EEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred EEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 7765421 24799999999999999999999999986654
No 23
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.68 E-value=2.1e-16 Score=143.48 Aligned_cols=100 Identities=29% Similarity=0.432 Sum_probs=73.2
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEcc-C
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D 96 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~-~ 96 (668)
.|+|+|||+++..|....+||+|||||++.+|+|||+..+..+++ .++|.++.+.....- ...++++|.+.+ .
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G----~IpL~~~~vr~v~~~--~~~rk~~F~l~~~d 84 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKY----MLSVDNLKLRDVEKG--FMSSKHIFALFNTE 84 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCEEE----EEECTTEEEEECCSC--SSSSCEEEEEEETT
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccccce----EEECCCceEeccCCC--CCCCceEEEEECCC
Confidence 499999777544344333599999999999999999998877433 346666665553321 125678887764 2
Q ss_pred CC----CCceEEEEecChHHHHHHHHHHHHH
Q 005939 97 GR----DGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 97 ~~----~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
++ +.++|.|+|+|.+|+++|+.+|.+|
T Consensus 85 ~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 85 QRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 22 4579999999999999999999765
No 24
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.67 E-value=2.5e-16 Score=140.76 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=76.6
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee---eecCCceEEEE
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~---~~~~kk~~fvi 93 (668)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+. ....+.++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCC---------cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4678999766 7777789999999999999999999886654 44557777765532 12345567777
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.. .++++|+|+|+|.+++.+|+.+|+.++...
T Consensus 72 ~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 72 TT--TKQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EE--TTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 54 236999999999999999999999999754
No 25
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.67 E-value=1.2e-16 Score=147.50 Aligned_cols=112 Identities=26% Similarity=0.446 Sum_probs=75.2
Q ss_pred CCCCcEEEEeeeeeee---cCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCC--CccceeeeCcEEcCCCceeeee--c
Q 005939 14 GASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVVR--E 85 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~K---kg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~--~~e~~l~L~~I~L~~~~sv~~~--~ 85 (668)
..+..+.|+|||++++ .|. ..++|++|||||+++.|+|||++....... +.....+.+.|+|..+...... .
T Consensus 7 ~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~ 86 (129)
T 2p0d_A 7 VGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLS 86 (129)
T ss_dssp --CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSC
T ss_pred CCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCC
Confidence 3456899999888642 232 248999999999999999999985321100 0001124556777766543222 2
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++++|.|.. .++++|+|+|++++|+++||.+|+.+|...
T Consensus 87 kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 87 SRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp SSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 3457777753 457899999999999999999999999754
No 26
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.67 E-value=1.6e-16 Score=142.44 Aligned_cols=102 Identities=25% Similarity=0.440 Sum_probs=77.1
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-------
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------- 84 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~--~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~------- 84 (668)
.....++++|||+ |+|...+.|++|||||+ ++.|+||+++.+.. +.+.|.|..+..+...
T Consensus 3 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~ 71 (117)
T 1v5u_A 3 SGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTE---------CKGVIDLAEVEAVAPGTPTIGAP 71 (117)
T ss_dssp SSCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSS---------CCCEEEGGGEEEEECCCCCTTSC
T ss_pred CCcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCc---------cceEEEccCcEEEeecCcccccc
Confidence 3456688999766 67777899999999999 88999999987755 3344555554443221
Q ss_pred --cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 85 --~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
..++++|.|.. .+++|+|+|+|++++.+|+.+|+.++..+|+
T Consensus 72 ~~~~~~~~F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 72 KTVDEKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSSCTTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCCCeEEEEEC---CCceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 23346676644 3799999999999999999999999876654
No 27
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=140.87 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEeeeeeeecCCCC-CCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceE
Q 005939 12 RPGASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (668)
Q Consensus 12 ~~~~~~~V~KeGyL~l~Kkg~~~-k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~ 90 (668)
++.....++++|||+ |++... +.|++|||||+++.|+||+++... +.++|.+..+. +.....++++
T Consensus 3 ~~~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~----------~~~~i~l~~~~-v~~~~~~~~~ 69 (114)
T 2da0_A 3 SGSSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNR----------QPAKLNLLTCQ-VKPNAEDKKS 69 (114)
T ss_dssp CSCCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCS----------CCEEEETTTSE-EEECSSSSSC
T ss_pred CCCCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCC----------CCCEEEeeeeE-EEECCCCCCE
Confidence 445566789999777 555434 899999999999999999986542 22344554443 2234455667
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
|.|.. .+++|+|+|+|++|+.+||.+|+.++..+-+
T Consensus 70 F~I~~---~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 105 (114)
T 2da0_A 70 FDLIS---HNRTYHFQAEDEQDYVAWISVLTNSKEEALT 105 (114)
T ss_dssp EEEEE---TTEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEc---CCcEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 77653 2799999999999999999999999976543
No 28
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.66 E-value=3.7e-17 Score=149.91 Aligned_cols=108 Identities=18% Similarity=0.304 Sum_probs=73.9
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCC----CCCCCccceeeeCcEEcCCCceeeee---cC
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA----LPQRGGEVNLTLGGIDLNNSGSVVVR---ED 86 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~----~p~~~~e~~l~L~~I~L~~~~sv~~~---~~ 86 (668)
..-+.++|+|||+ |+|...+.|++|||||+++.|+||+++... .|.+ ..+.+.|+|..|...... ..
T Consensus 7 ~~~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg----~~~~G~I~L~~~~v~~~~~~~~~ 80 (124)
T 2w2x_D 7 SKKDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLG----SLCRGILDLNTYNVVKAPQGKNQ 80 (124)
T ss_dssp ------CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCC----CSCSEEEEGGGEEEEECTTCBTT
T ss_pred hhhhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccC----CccccEEECCCCEEEEccCCcCC
Confidence 3455789999776 666678999999999999999999985321 2211 113456777776543333 34
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
++++|.|.......++|+|+|+|.+++.+||.||+.++..+
T Consensus 81 k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 81 KSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp BSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred CCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 56788776543335889999999999999999999998644
No 29
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=142.45 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=76.7
Q ss_pred CCCcEEEEeeeeeeecCC--CCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceE
Q 005939 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~--~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~ 90 (668)
....++++|||+ |+|. ..+.|++|||||+++ .|+||+++.+.. +.+.|.|..+..+.....++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~ 72 (119)
T 2dhk_A 4 GSSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGI 72 (119)
T ss_dssp SCSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCE
Confidence 345678999777 5553 679999999999998 999999987754 4566777776655433345567
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
|.|... +|+|+|+|++.+|+++||.+|+.++..
T Consensus 73 F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 73 FEIKTP---SRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEECS---SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 766542 799999999999999999999999853
No 30
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.66 E-value=5.5e-16 Score=139.10 Aligned_cols=98 Identities=24% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCcEEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
.....++++|||+ |++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... .++|.
T Consensus 3 ~~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~ 69 (115)
T 2cod_A 3 SGSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFE 69 (115)
T ss_dssp CCCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEE
Confidence 4566789999776 6665 678999999999999999999987754 45567777765554433 45666
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|.. .+|+|+|+|++.+++.+|+.+|+.++...
T Consensus 70 i~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 70 VVT---TQRTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp EEE---SSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 543 27999999999999999999999999543
No 31
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.66 E-value=8.2e-16 Score=136.01 Aligned_cols=97 Identities=27% Similarity=0.434 Sum_probs=73.6
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-------
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------- 85 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~------- 85 (668)
....++++|||+ |+|...+.|++|||||+++ .|+||+++.+.. +.+.|.|..+.......
T Consensus 3 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 71 (109)
T 2i5f_A 3 FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRKS 71 (109)
T ss_dssp CCCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSS---------CSEEEECTTCEEEEECC-------
T ss_pred ccCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCC---------ccEEEECCCCEEEEccCCcccccC
Confidence 356799999777 6677789999999999986 999999886654 44556666654322221
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.+.++|.|.. .++++|+|+|+|.+++.+|+.+|+.++
T Consensus 72 ~~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 72 EEENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp -CCSEEEEEC--TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 2556777654 246889999999999999999999886
No 32
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-15 Score=137.07 Aligned_cols=100 Identities=28% Similarity=0.444 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee----ecCC
Q 005939 13 PGASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDK 87 (668)
Q Consensus 13 ~~~~~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~----~~~k 87 (668)
..+...++++|||+ |++ ...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+
T Consensus 16 ~~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 84 (122)
T 2yry_A 16 RNPNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEES---------ILGSIPLLSFRVAAVQPSDNISR 84 (122)
T ss_dssp CCTTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------CCEEEESTTCCCEECCTTCSCSS
T ss_pred CCCCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCC---------cccEEEcCCCEEEEcCccccCCc
Confidence 34566799999887 444 3578999999999999999999987755 345566666542211 1235
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+++|.|.. .++++|+|+|+|++++.+|+.+|+.|+.
T Consensus 85 ~~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 85 KHTFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred ccEEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 57787742 2479999999999999999999999874
No 33
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.66 E-value=1e-15 Score=140.05 Aligned_cols=101 Identities=26% Similarity=0.409 Sum_probs=77.0
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC--eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec------
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------ 85 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~------ 85 (668)
.....++++|||+ |+|...+.|++|||||+++ .|+||+++.+.. +.+.|.|..+..+....
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 81 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRK 81 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSS---------CSEEEECTTCEEEECCCCCCSSS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCc---------ceeEEEccCCEEEEccCCccccc
Confidence 5577899999776 6777789999999999975 899999876654 44556676654432211
Q ss_pred -CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 86 -DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 86 -~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+.++|.|.. .++++|+|+|+|.+++.+|+.+|+.++...
T Consensus 82 ~~~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 82 SEEENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CSSCSEEEEEC--TTCCCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred cCCCeEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 2567777754 246889999999999999999999999643
No 34
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.66 E-value=6.6e-16 Score=140.23 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=77.1
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-cCCceEEEEcc
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFP 95 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~fvit~ 95 (668)
..++|+|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+...... ..++++|.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC---------cceEEECCceEEEEccCCCCCceEEEec
Confidence 4578999776 6676789999999999999999999887654 4455777766443222 34556776653
Q ss_pred CCC-------------------CCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 96 ~~~-------------------~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
... ..|+|+|+|+|++|+++|+.+|+.++...|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 124 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 124 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCCc
Confidence 221 2479999999999999999999999986654
No 35
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-16 Score=137.74 Aligned_cols=100 Identities=24% Similarity=0.421 Sum_probs=78.7
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee---cCCceE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLL 90 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~ 90 (668)
.....++++|||+ |++...+.|++|||||+++.|+||+++.+.. +.+.|.|..++.+... ..++++
T Consensus 3 s~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~ 71 (115)
T 2dn6_A 3 SGSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCL 71 (115)
T ss_dssp CCCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSE
T ss_pred CCCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeE
Confidence 3456789999776 6676789999999999999999999877654 5666777775554332 234567
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|.|... +++|+|+|++.+|+.+|+.+|+.++...
T Consensus 72 F~i~~~---~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 72 FLVKCF---DKTFEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 777542 7999999999999999999999999643
No 36
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=139.48 Aligned_cols=102 Identities=23% Similarity=0.416 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee----c
Q 005939 11 PRPGASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----E 85 (668)
Q Consensus 11 ~~~~~~~~V~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~----~ 85 (668)
....+...++++|||+ |++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+...... .
T Consensus 13 ~~~~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~ 81 (128)
T 2dkp_A 13 IKRNPNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---------ILGSILLPSFQIALLTSEDHI 81 (128)
T ss_dssp CCCCTTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------EEEEECGGGSEEEECCGGGCC
T ss_pred hhcCCCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEEcCceEEEEcCCcccC
Confidence 3345677899999777 5554 578999999999999999999887654 4455666554332211 2
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.++++|.|.. .++++|+|+|+|++|+++|+.+|+.|+.
T Consensus 82 ~~~~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 82 NRKYAFKAAH--PNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SSCSEEEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CCCeEEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4557777753 2369999999999999999999999875
No 37
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.65 E-value=6.5e-16 Score=142.37 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCCcEEEEeeeeeeecC-CCCCCcEEEEEEEe---CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-----c
Q 005939 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----E 85 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~---~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-----~ 85 (668)
......++|||+ |+| ...+.|+||||||+ +..|+||+++.+ .+... .++|.|.|..+..|... .
T Consensus 11 ~~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~-~~~~~----~~~G~I~L~~~~~V~~~~~~~~~ 83 (126)
T 1v5p_A 11 VDRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQN-LAVGA----GAVGSLQLTYISKVSIATPKQKP 83 (126)
T ss_dssp CCCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTT-SCTTC----CCSEEEETTTCCEEEECCTTTSC
T ss_pred ecCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCC-CCCCc----eeeEEEECCCccEEecCCcccCC
Confidence 444456899766 665 46899999999999 567788888532 11111 15677888775554332 2
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap 128 (668)
.++++|+|.. ..|+|+|+|+|++|+++||.+|+.|+...|
T Consensus 84 ~~~~~F~i~t---~~r~y~l~A~s~~e~~~Wi~al~~a~~~~~ 123 (126)
T 1v5p_A 84 KTPFCFVINA---LSQRYFLQANDQKDLKDWVEALNQASKSGP 123 (126)
T ss_dssp SCSSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHTTTTSS
T ss_pred CCCEEEEEEC---CCEEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 3457887643 269999999999999999999999876444
No 38
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=4.7e-16 Score=143.39 Aligned_cols=109 Identities=23% Similarity=0.400 Sum_probs=72.6
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEE-eCCeEEEEeCCCCCCCCCCccceeeeCcEEcCC-Cceeee--ecCCce
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVV--REDKKL 89 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL-~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~-~~sv~~--~~~kk~ 89 (668)
.....|+|+|||+ |+|...+.|++||||| +++.|+||+++.+..+.+...+...+..|.+.. |..+.. ...+++
T Consensus 3 ~~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~ 80 (130)
T 2d9v_A 3 SGSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG 80 (130)
T ss_dssp TSCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTT
T ss_pred CCCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCc
Confidence 3566799999777 6677789999999999 899999999987654222110000011111110 111111 123456
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+|.|.. .++|+|+|+|+|++|+++||.||+.++..
T Consensus 81 ~F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 81 LLTVNL--REGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 776653 23689999999999999999999999863
No 39
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=5.9e-16 Score=140.34 Aligned_cols=101 Identities=25% Similarity=0.420 Sum_probs=77.1
Q ss_pred CCCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-----cCC
Q 005939 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDK 87 (668)
Q Consensus 13 ~~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-----~~k 87 (668)
+.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+... ..+
T Consensus 8 ~~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~ 76 (125)
T 1eaz_A 8 PPQDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMR 76 (125)
T ss_dssp ----CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTC
T ss_pred CCCCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCc
Confidence 35567899999777 6677789999999999999999999987654 4455777766544331 234
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++|.|.. .+++|+|+|+|++|+.+|+.+|+.++...
T Consensus 77 ~~~F~i~~---~~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 77 DNLFEIVT---TSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp SSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEe---CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 66777654 27999999999999999999999999744
No 40
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.64 E-value=2.7e-16 Score=143.26 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=79.0
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeC-CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~-~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvi 93 (668)
....++++|||+ |+|...+.|++|||||++ +.|+||+++.+..+.+. +++..+.+..+........+.++|.|
T Consensus 4 ~~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~----i~L~~~~~~~~~~~~~~~~~~~~F~I 77 (125)
T 1unq_A 4 SDVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE----APLNNFSVAQCQLMKTERPRPNTFII 77 (125)
T ss_dssp GGGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHT----SCSEEEECTTCEEEEECSSSTTEEEE
T ss_pred CCCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCCCce----eEccceeEEeeeecccccCCCCEEEE
Confidence 346799999766 677778999999999996 69999998876443322 25556665554332233455677776
Q ss_pred cc-CCCCCceEEEEecChHHHHHHHHHHHHHHhhCC
Q 005939 94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (668)
Q Consensus 94 t~-~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap 128 (668)
.. .....++|+|+|+|.+|+.+|+.+|+.++...+
T Consensus 78 ~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 78 RCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 52 223468999999999999999999999997544
No 41
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.64 E-value=8.6e-16 Score=139.89 Aligned_cols=101 Identities=32% Similarity=0.431 Sum_probs=78.9
Q ss_pred CCCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee--cCCceE
Q 005939 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLL 90 (668)
Q Consensus 13 ~~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~ 90 (668)
+.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+... ..++++
T Consensus 12 ~~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~ 80 (126)
T 1fao_A 12 PTAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNC 80 (126)
T ss_dssp ---CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSE
T ss_pred cCCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCE
Confidence 34566789999776 6666789999999999999999999887654 4556778777654433 345577
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|.|.. .+++|+|+|+|.+++.+|+.+|+.++...
T Consensus 81 F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 81 FCLVF---PFRTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEEE---TTEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred EEEEe---CCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 77754 27999999999999999999999999754
No 42
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=1.8e-15 Score=138.15 Aligned_cols=99 Identities=24% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCC-CCCCCCCCccceeeeCcEEcCCCceeeeecC----
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGSVVVRED---- 86 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~--~~~L~YYKd~-~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~---- 86 (668)
.....++++|||+ |+|...+.|++|||||+ ++.|+||+++ .... +.+.|.|..+........
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v~~~~~~~~p~ 81 (129)
T 1x1g_A 13 ELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLVSALEDNGVPT 81 (129)
T ss_dssp TTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCCEECCSSSSCS
T ss_pred ccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEEEEeCCCCCcc
Confidence 4567899999776 66767899999999999 4799999986 3433 455577766543322221
Q ss_pred ------CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 87 ------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 87 ------kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+.++|.|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 82 ~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 82 GVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp SCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred cccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 456777754 3468899999999999999999999985
No 43
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=146.30 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCCcEEEEeeeeeeecC---CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee------
Q 005939 14 GASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------ 84 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg---~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~------ 84 (668)
.-...++++|||+++.++ ...++||+|||||+++.|+||+++.+... +.+.|.|..+..+...
T Consensus 10 ~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~--------~~G~I~L~~~~~v~~~~~~~~~ 81 (164)
T 2lul_A 10 HMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKY--------RKGFIDVSKIKCVEIVKNDDGV 81 (164)
T ss_dssp CCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCC--------CCCEEEGGGCCEEEECCCCSSS
T ss_pred cCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccc--------cccEEEEeeeEEEEeccccccC
Confidence 456789999988865433 23568999999999999999998765432 2334555554433221
Q ss_pred --cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcchhhccccccccC
Q 005939 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRN 142 (668)
Q Consensus 85 --~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a~~~g~~g~f~~ 142 (668)
...+++|.|... .|+|||+|+|++|+++||.+|++++...++-. ..-|.|.|..
T Consensus 82 ~~~~~~~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~-~~yHpg~~~~ 137 (164)
T 2lul_A 82 IPCQNKYPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIM-IKYHPKFWTD 137 (164)
T ss_dssp CCSSSCSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSCCC-SEECCSCCCT
T ss_pred cccccceeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChhhh-hhcCCCcccC
Confidence 123456655432 79999999999999999999999998665532 1235666654
No 44
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.64 E-value=5.8e-16 Score=141.60 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=71.5
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--C--------Cc
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--D--------KK 88 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~--------kk 88 (668)
++++|||+ |++...++|++|||||+++.|+|||++...... .+++.|.|..|....... . +.
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~------~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~ 77 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDL------VPVMSLALSECTVTEHSRKNSTSSPNSTGSD 77 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTCC------SCSEEEEGGGEEEEEECCCCC---------C
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCC------CceEEEECCCCEEEEcccccccccccccCCC
Confidence 89999777 666678999999999999999999987632111 145566666554433222 1 55
Q ss_pred eEEEEccCCCC----CceEEEEecChHHHHHHHHHHHHHH
Q 005939 89 LLTVLFPDGRD----GRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 89 ~~fvit~~~~~----gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
++|.|...... +++|+|+|+|.+|+++|+.+|+.++
T Consensus 78 ~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 78 AKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred cEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 67777654321 4799999999999999999999885
No 45
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.63 E-value=2.1e-15 Score=136.50 Aligned_cols=99 Identities=26% Similarity=0.417 Sum_probs=74.1
Q ss_pred CCCCcEEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee----ecCCc
Q 005939 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~----~~~kk 88 (668)
.+...++++|||+ |++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+.
T Consensus 6 ~p~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~v~~~~~~~~~~~~ 74 (123)
T 1upq_A 6 DPNLPVHIRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREES---------VLGSVLLPSYNIRPDGPGAPRGRR 74 (123)
T ss_dssp CTTSCEEEEEEEE--EECSSSSCCEEEEEEEEETTEEEEESSTTCCS---------CCEEEEGGGCEEEECCSSCTTSSS
T ss_pred CCCCCceEEEEEE--eeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEECCCCEEEECCCCccCCCc
Confidence 4556799999777 4443 578999999999999999999887755 334455554433221 12356
Q ss_pred eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
++|.+.. .++++|+|+|+|.+++.+|+.+|+.++.
T Consensus 75 ~~f~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 75 FTFTAEH--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp SEEEEEC--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEEEEEC--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 7777653 3359999999999999999999999985
No 46
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.63 E-value=6.6e-16 Score=149.34 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=72.0
Q ss_pred cEEEEeeeeeeecCC---CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee---cC----C
Q 005939 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---ED----K 87 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~---~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~----k 87 (668)
.|+|+|||+++.++. .+++||+|||||+++.|+||+++.+.. .-..+.|.|.|..+..+... .. +
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~-----~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG-----RRGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT-----EEEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC-----CCCceeeEEECcceEEEEeccCCCCcchhc
Confidence 578999888554332 358899999999999999999842110 00125666777665443221 11 1
Q ss_pred c---------------------eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 88 k---------------------~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
+ ++|.|... .++|||+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 56655432 589999999999999999999999986554
No 47
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.63 E-value=1.5e-17 Score=171.87 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=75.6
Q ss_pred CCCcEEEEeeeee------eecCCC----CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee
Q 005939 15 ASNTVFKSGPLFI------SSKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR 84 (668)
Q Consensus 15 ~~~~V~KeGyL~l------~Kkg~~----~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~ 84 (668)
....|+|+|||++ .|+|.. .++|++|||||+++.|+|||++....... -..+.+.|.|..+......
T Consensus 7 ~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~---~~~p~g~I~L~~~~v~~~~ 83 (263)
T 3a8p_A 7 EQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ---NSAPRCALFAEDSIVQSVP 83 (263)
T ss_dssp ---CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEECT
T ss_pred cCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccccc---ccCccceEEcCCcEEEECC
Confidence 4567999999983 244544 78999999999999999999864211000 0114455777655443222
Q ss_pred --cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCC
Q 005939 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (668)
Q Consensus 85 --~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap 128 (668)
..++++|.|.. .++++|+|+|+|++++++||.+|+.++...+
T Consensus 84 ~~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 84 EHPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp TCSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 23567787754 2489999999999999999999999997654
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.9e-15 Score=132.91 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=74.3
Q ss_pred cEEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-----ecCCceE
Q 005939 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKLL 90 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~~kk~~ 90 (668)
.++++|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+.++
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~~~ 72 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---------PKGTFLIKGYSVRMAPHLRRDSKKESC 72 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSGGGGGE
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCC---------CCEEEEecceEEEeCCccccccCCcce
Confidence 589999888655432 238999999999999999999887654 344566666554322 1234577
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
|.|.. .++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 73 F~i~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 73 FELTS--QDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 77754 33599999999999999999999999863
No 49
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.62 E-value=1.2e-15 Score=137.30 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=69.7
Q ss_pred EEeeeeeeecC--CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCcee--e--eecCCceEEEEc
Q 005939 21 KSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--V--VREDKKLLTVLF 94 (668)
Q Consensus 21 KeGyL~l~Kkg--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv--~--~~~~kk~~fvit 94 (668)
|+|||+++..+ ...+.|++|||||+++.|+||+++.+.. +.+.|+|...... . ....++++|.+.
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~---------p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~ 72 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVI---------PLLSVNMGGEQCGGCRRANTTDRPHAFQVI 72 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCS---------CSEEEETTC-CEEEEEECCCSSCTTEEEEE
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCC---------ccceEEecCCEEEeeeccCCCCCCeEEEEE
Confidence 79988743222 1579999999999999999999987655 3344666543221 1 223456788775
Q ss_pred cCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 95 ~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
. .++++|+|+|+|+++|++||.+|+.++..
T Consensus 73 ~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 73 L--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp E--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred c--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 3 24789999999999999999999999863
No 50
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.62 E-value=7.5e-16 Score=140.14 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=75.5
Q ss_pred CCCcEEEEeeeeeeec------CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee--ecC
Q 005939 15 ASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RED 86 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kk------g~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~ 86 (668)
+...|+|+|||+++.. ....+.|++|||||+++.|+||+++.+....... .....|.+..+..... ...
T Consensus 4 ~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~---~~~~~i~l~~~~~~~~~~~~~ 80 (123)
T 1wjm_A 4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPY---HGEVPVSLARAQGSVAFDYRK 80 (123)
T ss_dssp CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBS---SSCCCEECTTCEEEECTTCSS
T ss_pred CCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCccc---CCCceEEccCcEEeecccccC
Confidence 4567889998875432 1127899999999999999999998764311000 0112345544322211 134
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
++++|.|.. .++++|+|+|+|++|+++||.+|+.++...|+
T Consensus 81 r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 81 RKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp CSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 567777753 34799999999999999999999999986654
No 51
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.62 E-value=3.3e-15 Score=140.38 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=75.4
Q ss_pred CCCCcEEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-----ecC
Q 005939 14 GASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RED 86 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~~ 86 (668)
.....++|+|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...
T Consensus 12 ~~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 82 (148)
T 1u5f_A 12 QDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGK 82 (148)
T ss_dssp GGCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECTTSCSSTT
T ss_pred hhCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcc---------cceEEEcCCcEEEECCCcccCCC
Confidence 3457899999887543321 357999999999999999999987654 445566766544321 123
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+.++|.|.. .++|+|+|+|+|.+++.+|+.+|+.++..
T Consensus 83 ~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 83 KDCCFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp GGGEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred CccEEEEEC--CCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 347777754 23699999999999999999999999863
No 52
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=139.29 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=75.4
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEe--CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~--~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
....++++|||+ |++...+.|++|||||+ ++.|+||+++.+... .+.+.|.|..+. +.....+.++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~-------~~~g~I~L~~~~-v~~~~~~~~~F~ 73 (120)
T 2d9x_A 4 GSSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQ-------KPRGTLQLAGAV-ISPSDEDSHTFT 73 (120)
T ss_dssp CCSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSS-------CCSEEEECTTCC-EECCSSSSSCEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCC-------CccceEEcceEE-EEecCCCCCEEE
Confidence 345678999777 55556799999999999 479999998775311 145567777754 333344557777
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|.. .++++|+|+|+|++|+++||.+|+.++...
T Consensus 74 i~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 106 (120)
T 2d9x_A 74 VNA--ASGEQYKLRATDAKERQHWVSRLQICTQHH 106 (120)
T ss_dssp ECC--SSSCCEEECCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHHh
Confidence 753 236999999999999999999999998643
No 53
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=133.84 Aligned_cols=99 Identities=28% Similarity=0.452 Sum_probs=74.6
Q ss_pred CCCCcEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee----ecCCc
Q 005939 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~----~~~kk 88 (668)
.+...++++|||+ |++ ...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++
T Consensus 6 ~p~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 74 (117)
T 2d9y_A 6 SGNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEES---------ILGSIPLLSFRVAAVQPSDNISRK 74 (117)
T ss_dssp CSSCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCS---------CCEEEECSSCEEEECCTTTTCCCS
T ss_pred CCCCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCC---------cCCEEEeCCeEEEEcCccccCCCc
Confidence 3456799999877 444 3578999999999999999999887655 344566665543211 12345
Q ss_pred eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
++|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 75 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 75 HTFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp SEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred cEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 6777742 2469999999999999999999999885
No 54
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.61 E-value=1.6e-15 Score=133.27 Aligned_cols=95 Identities=20% Similarity=0.335 Sum_probs=68.9
Q ss_pred EEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCC
Q 005939 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~g 100 (668)
++|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.|.|..+... ....+.++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~-------~~g~i~L~~~~v~-~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKG-------SKGSIKMAVCEIK-VHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CC-------CSCEEEGGGCEEE-CCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCC-------cccEEEeeeeEEE-EcCCCCceEEEEe--CCC
Confidence 479666 777778999999999999999999998753211 3455666543332 2233455565543 347
Q ss_pred ceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 101 RAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
++|+|+|+|++|+++|+.+|+.|+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988644
No 55
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=1.5e-15 Score=137.21 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=70.4
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC---eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~---~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
+..++++|||+++ +. .+.|+||||||+++ .|+||+++.+..|.+ .++|.++.+..+.. .....++++|.
T Consensus 5 ~~~~~~~G~L~k~--~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g----~I~L~g~~V~~~~~-~~~~~~~~~Fk 76 (112)
T 2coc_A 5 SSGSLLCGPLRLS--ES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR----TIPLPSCKLSVPDP-EERLDSGHVWK 76 (112)
T ss_dssp CSSSSSEEEEEEE--SS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCS----EECGGGCEEECCCS-SSCCSSSEEEE
T ss_pred cCCceEEEEEEec--CC-CCCceEEEEEEECCCccEEEEECCCCccCcce----EEEcCCCEEEecCc-ccccCCCCEEE
Confidence 3455677988863 32 78999999999985 799999998866332 22333333332111 01233567887
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
|.. .+++|+|+|+|++++++||.+|+.|+..
T Consensus 77 i~~---~~~~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 77 LQW---AKQSWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp EEE---TTEEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred Eec---CCeEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 764 3789999999999999999999998753
No 56
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=2e-15 Score=141.91 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=77.4
Q ss_pred CCCCcEEEEeeeeeeecC----CCCCCcEEEEEEEeCC-----eEEEEeCCC-CCCCCCCccceeeeCcEEcCCCceeee
Q 005939 14 GASNTVFKSGPLFISSKG----IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVV 83 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg----~~~k~WKKRWFVL~~~-----~L~YYKd~~-~~~p~~~~e~~l~L~~I~L~~~~sv~~ 83 (668)
.....++++|||+++..+ ...+.|++|||||+++ .|+||+++. +.. +.+.|.|..|..+..
T Consensus 13 s~~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~~~ 83 (150)
T 1wg7_A 13 SQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGVVQ 83 (150)
T ss_dssp BCSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEECC
T ss_pred CCCCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEEec
Confidence 345779999977744322 3468999999999997 999999887 433 455677777665433
Q ss_pred e-cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 84 R-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 84 ~-~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
. ..++++|.|.. .++++|+|+|++.+++.+|+.+|+.++...
T Consensus 84 ~~~~~~~~F~i~~--~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 84 NNKVRRFAFELKM--QDKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp CCSSCTTEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEe--CCCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 2 24567777754 235999999999999999999999999744
No 57
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=141.34 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC---CCCCCCccceeeeCcEEcCCCce--eeee----cC
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGS--VVVR----ED 86 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~---~~p~~~~e~~l~L~~I~L~~~~s--v~~~----~~ 86 (668)
...|+++|||+++..|...+.|++|||||+++.|+||+++.+ .. +.+.|+|..+.. +... ..
T Consensus 2 ~~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~---------p~g~I~L~~~~~~~v~~~~~~~~~ 72 (134)
T 2y7b_A 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKN---------PIGRINLANCTSRQIEPANREFCA 72 (134)
T ss_dssp CCCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSC---------CSEEEEGGGBCSSSCEECCTTTCC
T ss_pred CCCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccC---------ceEEEEhhhCccccccccchhhcc
Confidence 456889998885543667899999999999999999996543 22 455566666542 3222 13
Q ss_pred CceEEEEcc---CCC--------------CCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 87 KKLLTVLFP---DGR--------------DGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 87 kk~~fvit~---~~~--------------~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
++++|.|.. ... ..++|+|+|+|++|+.+||.+|+.++.
T Consensus 73 ~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 73 RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 556776643 110 115899999999999999999999986
No 58
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.59 E-value=2.6e-15 Score=133.92 Aligned_cols=103 Identities=24% Similarity=0.464 Sum_probs=71.5
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEE-eCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee---eecCC--ceE
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDK--KLL 90 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL-~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~---~~~~k--k~~ 90 (668)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+.+ .+.+....|.+.....+. ....+ +++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g--~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIED--KVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEE--EEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCc--cccccccceeecccccccccCCCCCCCcCcE
Confidence 4578999766 6677789999999999 889999999987654322 112222234433222211 22222 467
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
|.|.. .++++|+|+|+|++|+.+|+.+|+.|..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 77753 2479999999999999999999999864
No 59
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=137.21 Aligned_cols=109 Identities=19% Similarity=0.352 Sum_probs=73.4
Q ss_pred CCCcEEEEeeeeeee-----cCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc---cceeeeCcEEcCCCceeee---
Q 005939 15 ASNTVFKSGPLFISS-----KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG---EVNLTLGGIDLNNSGSVVV--- 83 (668)
Q Consensus 15 ~~~~V~KeGyL~l~K-----kg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~---e~~l~L~~I~L~~~~sv~~--- 83 (668)
....|.|+|||+.++ +....++|++|||||+++.|+|||++....+.+.. ....+.+.|+|..+.....
T Consensus 4 ~~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d 83 (124)
T 3pp2_A 4 RTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKD 83 (124)
T ss_dssp -----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGG
T ss_pred cCCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccc
Confidence 456799999998652 12234699999999999999999998765321100 0012455677776544322
Q ss_pred ecCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 84 ~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
...++++|.+.+ .++++|+|+|+++++|++|+.+|+.||+
T Consensus 84 ~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 84 KSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 234567777653 4589999999999999999999999985
No 60
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=135.94 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=67.1
Q ss_pred CcEEEEeeeeeeec-C-CCCCCcEEEEEEEeC-CeEEEEeCCCCCC-CCCCc-------cceeeeCcEEcCCCcee----
Q 005939 17 NTVFKSGPLFISSK-G-IGWKSWKKRWFILTR-TSLVFFKNDPSAL-PQRGG-------EVNLTLGGIDLNNSGSV---- 81 (668)
Q Consensus 17 ~~V~KeGyL~l~Kk-g-~~~k~WKKRWFVL~~-~~L~YYKd~~~~~-p~~~~-------e~~l~L~~I~L~~~~sv---- 81 (668)
+.++|+|||+ |+ | ...++|++|||||++ +.|+||++..+.. ...+. .+..+.+.|.+..+...
T Consensus 2 ~~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~ 79 (128)
T 2rlo_A 2 AIPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSAS 79 (128)
T ss_dssp CCEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSC
T ss_pred CcceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccc
Confidence 3578999777 55 3 257999999999996 7888886522100 00011 11222333444433211
Q ss_pred --ee-ecCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 82 --VV-REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 82 --~~-~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.. .+.++++|.|.. .++++|+|+|+|++|+++||.||+.++..
T Consensus 80 ~~~~~~~~~~~~F~I~t--~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 80 GSAGQAEEENFEFLIVS--STGQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCCSSCCCCCCCEEEEC--TTSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 00 124556776643 23699999999999999999999999863
No 61
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.58 E-value=5.1e-15 Score=141.97 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=64.4
Q ss_pred cEEEEeeeeee--------ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCC--Cce-eee-ec
Q 005939 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGS-VVV-RE 85 (668)
Q Consensus 18 ~V~KeGyL~l~--------Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~--~~s-v~~-~~ 85 (668)
.|+++|||+++ |+|...+.|++|||||+++.|+||+++.+.... +.+.|.|.. +.. +.. ..
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~-------~~g~i~l~~~~~~~~~~~~~~ 74 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTP-------SEEEQPISVNACLIDISYSET 74 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC---------------CEECSSCEEEECSSSC
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccc-------cCCceEecccceEEEeccccC
Confidence 47899999865 556678999999999999999999998652211 122233322 211 111 13
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.++++|.|... +++|+|+|++++|+++||.+|+.++...
T Consensus 75 ~~~~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~ 113 (168)
T 2j59_M 75 KRKNVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLN 113 (168)
T ss_dssp SCSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred CCCCEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 45677777643 5899999999999999999999998643
No 62
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.58 E-value=1.6e-15 Score=138.03 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=75.9
Q ss_pred CCCcEEEEeeeeeeec------CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee--cC
Q 005939 15 ASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--ED 86 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kk------g~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~ 86 (668)
.+..|.|+|||+++.. ....+.|++|||||+++.|+||+++.+..+.+...+ ...+.|+|..+...... ..
T Consensus 4 ~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~k 82 (122)
T 1dro_A 4 TGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYTK 82 (122)
T ss_dssp CCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSSS
T ss_pred CCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCCC
Confidence 4567889998885432 114789999999999999999999876543211100 01234555554332222 23
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
++++|.+.+ .++++|+|+|+++++|++||.+|+.++..
T Consensus 83 r~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 83 KKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp STTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 557777753 34799999999999999999999999864
No 63
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=2.8e-15 Score=133.10 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCcee-eeecCCceEEEE
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVL 93 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv-~~~~~kk~~fvi 93 (668)
+...++++|||+++ ..+.|++|||||+++.|+||+++.. .+ . ..+.|.+..+... .....++++|.|
T Consensus 4 ~~~~~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~-~~--~-----~~~~i~l~~~~v~~~~~~~~~~~F~i 71 (107)
T 2cof_A 4 GSSGLETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNR-SK--V-----AQQPLSLVGCEVVPDPSPDHLYSFRI 71 (107)
T ss_dssp CCCCCTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTT-CS--E-----EEEEECTTTCEEECCCBTTBSCEEEE
T ss_pred CCCCCcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCcc-cC--C-----CeeEEeccceEEEECCCCCCCeEEEE
Confidence 44567899988754 5789999999999999999998865 11 1 2222333333111 112345577777
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.. .+.++|+|+|+|.+|+++||.+|+.++.
T Consensus 72 ~~--~~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 72 LH--KGEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp EE--TTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred Ee--CCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 54 2378999999999999999999999875
No 64
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.57 E-value=1e-14 Score=146.01 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=76.6
Q ss_pred CcEEEEeeeeeeecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-----ecCCce
Q 005939 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~~kk~ 89 (668)
..++|+|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...+.+
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc---------ceEEEEeCCcEEEEcCCccccCCCCC
Confidence 4699999888654321 468999999999999999999988754 445577777666442 123457
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+|.|.. .++|+|+|+|+|.+++.+||.+|+.++..
T Consensus 175 ~F~I~t--~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 175 CFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 787754 23699999999999999999999999863
No 65
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.53 E-value=1.5e-14 Score=127.13 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred EEeeeeeeec----C--CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee--ecCCceEEE
Q 005939 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (668)
Q Consensus 21 KeGyL~l~Kk----g--~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~kk~~fv 92 (668)
++|||+++.. | ...+.|++|||||+++.|+||+++.+....... .+...|++..+..... ...++++|.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPY---HSEVPVSLKEAICEVALDYKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCS---SSCCCEECTTCEEEECSSCCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCC---CCcceEECCCCEEEEcccccCCccEEE
Confidence 4798875541 1 457899999999999999999987632100000 0122344444332111 234567777
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHH
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
|.. .++++|+|+|+|++|+.+||.+|+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 753 34799999999999999999999864
No 66
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.52 E-value=2.8e-14 Score=144.27 Aligned_cols=98 Identities=28% Similarity=0.551 Sum_probs=79.8
Q ss_pred CCcEEEEeeeeeeecCCC-----CCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceE
Q 005939 16 SNTVFKSGPLFISSKGIG-----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~-----~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~ 90 (668)
...++++|||+ |+|.. .+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.....++++
T Consensus 55 ~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~~ 123 (228)
T 3tfm_A 55 KQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKENG 123 (228)
T ss_dssp CCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTSE
T ss_pred CCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCcE
Confidence 45688999777 44433 38999999999999999999987644 6778888888776555566777
Q ss_pred EEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 91 fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
|.|.. .+++|+|+|+|++|+++|+.+|+.++...
T Consensus 124 F~I~t---~~r~~~l~A~s~~e~~~Wv~aL~~~i~~~ 157 (228)
T 3tfm_A 124 IDIIM---ADRTFHLIAESPEDASQWFSVLSQVHSST 157 (228)
T ss_dssp EEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred EEEEc---CCcEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 77754 37999999999999999999999999743
No 67
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=155.53 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=76.0
Q ss_pred CCCCcEEEEeeeeeeec-CCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCcee-eeecCCceEE
Q 005939 14 GASNTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLT 91 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kk-g~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv-~~~~~kk~~f 91 (668)
.....+.|+||||++.+ |+.++.|+||||||+++.|+||+...... .+.|+|..|... ....++++||
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~----------~~~~~l~~~~v~~~~~~~r~~cF 365 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG----------GLIQDLDNCSVMAVDCEDRRYCF 365 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC----------CCCBCSSCCEEEEECCTTCSSEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC----------CeEEECCceEEEECCCCCCCceE
Confidence 45567899999998644 66678999999999999999998654321 123445554332 2234677888
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.|... ...++|+|+|+|++|+.+||.+|+.++..+
T Consensus 366 ~i~~~-~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 366 QITTP-NGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EEECT-TSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEEec-CCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 77542 124799999999999999999999999755
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.49 E-value=2.1e-13 Score=125.29 Aligned_cols=107 Identities=14% Similarity=0.244 Sum_probs=72.8
Q ss_pred EEEeeeeee---ecCC--CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-CCceEEEE
Q 005939 20 FKSGPLFIS---SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVL 93 (668)
Q Consensus 20 ~KeGyL~l~---Kkg~--~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-~kk~~fvi 93 (668)
..+|||..+ |.|. .+++|++|||||+|+.|+||+............-..+.+.|.|.++....... .++++|.+
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~~~~~~~F~L 81 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQL 81 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCTTSTTEEEE
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecCCCCCCCEEEE
Confidence 467888754 5554 37899999999999999999966311100000001144556666655432222 35678877
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.. ...|.+|+|+|++.+++..|+++|+.|+...
T Consensus 82 ~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 82 NN-PDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred ee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 63 2358999999999999999999999999643
No 69
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.48 E-value=1.1e-13 Score=148.43 Aligned_cols=103 Identities=25% Similarity=0.401 Sum_probs=78.0
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEEEccC
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPD 96 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fvit~~ 96 (668)
.++++|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++++|.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccC---------CcEEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 468999776 6777789999999999999999999987655 345577776553222 2345677776532
Q ss_pred C-------------------CCCceEEEEecChHHHHHHHHHHHHHHhhCCcch
Q 005939 97 G-------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPSAA 131 (668)
Q Consensus 97 ~-------------------~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~a 131 (668)
. ...|+|+|+|+|++|+.+|+.+|+.++...|...
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~~ 334 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYD 334 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCHH
Confidence 1 1248999999999999999999999998665543
No 70
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.47 E-value=1.1e-13 Score=150.33 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCcEEEEeeeeeeecCC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEEE
Q 005939 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVL 93 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fvi 93 (668)
.+.++|+|||+++..++ .++.|++|||||+++.|+||++ .+.. +.+.|+|..|..... ...+++||.|
T Consensus 275 ~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~---------~~~~i~l~~~~v~~~~~~~r~~~F~i 344 (385)
T 2q13_A 275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVA---------GGLAMDIDNCSVMAVDCEDRRYCFQI 344 (385)
T ss_dssp CCCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSS---------CEEEEECTTCEEEEECCTTCSSEEEE
T ss_pred CCCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcC---------CCceEEccceEEEeccccCCCceEEE
Confidence 35789999888543332 2357999999999999999998 3322 234577777654333 2456688877
Q ss_pred ccCCCCC-ceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 94 FPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 94 t~~~~~g-r~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+. ++ ++|+|+|+|++|+.+||.||+.++...
T Consensus 345 ~t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~ 377 (385)
T 2q13_A 345 TSF--DGKKSSILQAESKKDHEEWICTINNISKQI 377 (385)
T ss_dssp ECT--TSCBCCCEECSSHHHHHHHHHHHHHHHTTC
T ss_pred EeC--CCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 542 23 899999999999999999999998643
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.47 E-value=1.5e-13 Score=149.33 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCCcEEEEeeeeeeecCCCC-CCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCcee------eeecC-
Q 005939 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRED- 86 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~-k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv------~~~~~- 86 (668)
....++|+|||+ |+|... ++||+|||||+++.|+||+++.+.. +.|.|.|..+..+ .+...
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------~~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------ARGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------CSEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---------cceEEEeecceeeeeecccCCcccc
Confidence 356789999666 777766 9999999999999999999988765 4455666554332 11111
Q ss_pred C---ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 87 K---KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 87 k---k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+ +++|.|... +|+|+|+|+|++|+++||.||+.++.+
T Consensus 334 ~~~~~~~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1 466665432 699999999999999999999999975
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.46 E-value=7.6e-14 Score=144.25 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-
Q 005939 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR- 84 (668)
Q Consensus 13 ~~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~-------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~- 84 (668)
+.....++|+|||+ |+ +.||+|||||+++ .|+||+++.+..... ..+.+.|.|..+..+...
T Consensus 4 ~~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~----~~p~g~I~L~~~~~V~~~~ 73 (264)
T 1qqg_A 4 SDGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKS----SAPKRSIPLESCFNINKRA 73 (264)
T ss_dssp -----CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTC----SCCSEEEEGGGEEEEEEEC
T ss_pred CCCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccc----cCcceEEEeeceEEEEecc
Confidence 45567899999776 44 7999999999998 999999886511000 014566778776655332
Q ss_pred -cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 85 -~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
..++++|.|... .|+|+|+|+|++|+++|+.+|+.++...
T Consensus 74 ~~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 74 DSKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp CSSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred CCCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 334567766542 7999999999999999999999998644
No 73
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.38 E-value=8.2e-13 Score=137.02 Aligned_cols=100 Identities=19% Similarity=0.279 Sum_probs=70.5
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-------ecCCceE
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLL 90 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-------~~~kk~~ 90 (668)
...++|||| |+|...++|++|||||+++.|+||++..+..+.+.. .+ +.+..+..... ...++++
T Consensus 167 ~p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i----~l--~~l~~~~v~~~~~~~~~~~~~~~~~ 238 (291)
T 3tca_A 167 VPELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLA----CF--IQFENVNIYYGIQCKMKYKAPTDHC 238 (291)
T ss_dssp CCCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCE----EE--EEGGGCEEEEECSHHHHHCCSSSCE
T ss_pred CCceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCce----ee--ccceeEEEEecCccccccCCCCCeE
Confidence 346899887 666668999999999999999999998876654422 11 22222211111 1345678
Q ss_pred EEEccCC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 91 TVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 91 fvit~~~---~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
|.|.+.. ...++|+|+|+|++++..||.||+.|..
T Consensus 239 F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 239 FVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp EEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 8775422 2347899999999999999999998753
No 74
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.34 E-value=4.6e-12 Score=118.95 Aligned_cols=105 Identities=14% Similarity=0.275 Sum_probs=76.7
Q ss_pred EEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCC---------CC----C-------C-----C------------
Q 005939 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---------AL----P-------Q-----R------------ 62 (668)
Q Consensus 20 ~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~---------~~----p-------~-----~------------ 62 (668)
+|.|||| +++...+.|++|||||+++.|+|++.... .. + . .
T Consensus 2 ~k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 6899888 45566899999999999999999982221 11 0 0 0
Q ss_pred ---CccceeeeCcEEcCCCceeeee---cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 63 ---GGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 63 ---~~e~~l~L~~I~L~~~~sv~~~---~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.+.-++..|.|+|..|...... ..+.++|.|.+...+.++|+|.|+|.++|.+||++|+.|+..
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 0001122577888887775443 246688888776666789999999999999999999999863
No 75
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.33 E-value=1.5e-12 Score=118.41 Aligned_cols=99 Identities=15% Similarity=0.283 Sum_probs=67.8
Q ss_pred EEeeeeeeecCCCCC-CcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee--------e--cCCce
Q 005939 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--------R--EDKKL 89 (668)
Q Consensus 21 KeGyL~l~Kkg~~~k-~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--------~--~~kk~ 89 (668)
.+|||.+.|+|+..+ +|++|||||+++.|+||+++.+.. ... +.+.|+|+....|.. . .+..+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~-----p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~ 76 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSN-----PYMVLDIDKLFHVRPVTQTDVYRADAKEIPR 76 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTC-----CSEEECGGGEEEEEECCTTTCSSSCTTTGGG
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCC-----ceEEEECcccEEEEEcccccccccccccCCc
Confidence 489887666777777 999999999999999999865320 000 233455544322211 1 12345
Q ss_pred EEEEccCC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 90 ~fvit~~~---~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.|.|+... ...++|||.|+|++|+++|+.+|+++|.
T Consensus 77 iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 77 IFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 67665322 2358999999999999999999999874
No 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.29 E-value=4e-12 Score=138.15 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=68.8
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEE--eCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee--ecCCceEEEEc
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLF 94 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~kk~~fvit 94 (668)
.+|+|||| |+|...+.|++||||| +++.|+||+++.+.. +.+.|.|..+..+.. ...+.++|.|.
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~---------p~g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKE---------PKAVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----C---------CSEEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccC---------cccEEEeeccEEEEcccccCCCceEEEE
Confidence 58999777 7787789999999999 899999999987766 445566666444332 12456666653
Q ss_pred -cCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 95 -~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
......|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 222336999999999999999999999874
No 77
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-11 Score=111.41 Aligned_cols=98 Identities=17% Similarity=0.329 Sum_probs=70.7
Q ss_pred EEEEeeeeeee-cCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee---cCCceEEEE-
Q 005939 19 VFKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL- 93 (668)
Q Consensus 19 V~KeGyL~l~K-kg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~fvi- 93 (668)
...++||-+.+ ++..++.||+|||||+++.|+|||++.+.. + . +++.|.|..|.. .+. ..+++.+.+
T Consensus 9 pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~-e----Pig~I~L~gceV-~pd~~~~~~kf~ikl~ 80 (137)
T 2ys3_A 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--G-D----PIQQLNLKGCEV-VPDVNVSGQKFCIKLL 80 (137)
T ss_dssp CCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--S-C----CSCCBCTTTCEE-EECCBGGGTBEEEEEE
T ss_pred cchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--C-C----CceEEECCCCEE-eccccccCCceEEEEE
Confidence 34668775543 344589999999999999999999988752 1 1 566677777653 232 245665544
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
.|...+.++|+|.|+|++++.+||.|++.|-
T Consensus 81 iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 81 VPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp EECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence 3422234999999999999999999999875
No 78
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.22 E-value=6.6e-12 Score=130.12 Aligned_cols=106 Identities=26% Similarity=0.387 Sum_probs=69.5
Q ss_pred CCCcEEEEeeeeee-----ecC-----CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-
Q 005939 15 ASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV- 83 (668)
Q Consensus 15 ~~~~V~KeGyL~l~-----Kkg-----~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~- 83 (668)
....|.|+|||..+ +++ ...+.|++|||||+++.|+||+++....... ...+.+.|.|..+.....
T Consensus 7 ~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~---~~~p~~~I~L~ga~v~~a~ 83 (279)
T 3a8n_A 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDH---NSVPKHAVWVENSIVQAVP 83 (279)
T ss_dssp ---CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC-----------CCCSSCCBCCSCEECCCT
T ss_pred cCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEeccccccccc---ccCCCceEeccCcEEEecc
Confidence 44568899999743 221 1368999999999999999999987532110 011233455555444311
Q ss_pred e-cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 84 R-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 84 ~-~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
. ..++++|.++. .++++|+|+|++.+||+.|+.+|+.++.
T Consensus 84 d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 EHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp TSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 23456666653 4689999999999999999999999986
No 79
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.21 E-value=2e-11 Score=134.07 Aligned_cols=104 Identities=21% Similarity=0.335 Sum_probs=72.2
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEe-CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEc-
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF- 94 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit- 94 (668)
..|+|+|||+ |+|+..+.||+|||||+ ++.|+|||+++...+.+. +++..+.+..|........+.++|.|.
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~----i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQRE----APLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccCc----ccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999665 77888999999999998 899999999987664332 245555555555444444455566663
Q ss_pred cCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 95 ~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+........+|++++.+++.+|+.||+.++..
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 32222233489999999999999999999753
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=7.2e-11 Score=107.05 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC------eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCC
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK 87 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~k 87 (668)
.....++|+||||++..+...+.|+||||||.+. .|-||..+....... . +-+.|.|..|-++......
T Consensus 7 ~m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~-~----~rrVIrLsdCisV~~~~~e 81 (127)
T 2d9w_A 7 GMGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCE-A----ARKVIRLSDCLRVAEAGGE 81 (127)
T ss_dssp CSCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCS-C----CEEEECGGGEEEEEECCSC
T ss_pred cccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCC-C----CceEEEhhhCCeEecccCc
Confidence 4567789999999988755556799999999873 789998876532111 1 4466888887776543222
Q ss_pred ------ceEE-EEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 88 ------KLLT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 88 ------k~~f-vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.+.| +.|+ .|+|+|.|++. |+.+||.+|..+.-
T Consensus 82 ~~~pk~~~aF~l~T~----er~~~laAe~~-E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 82 ASSPRDTSAFFLETK----ERLYLLAAPAA-ERGDWVQAICLLAF 121 (127)
T ss_dssp SSSCSSCEEEEEEES----SCEEEEEECHH-HHHHHHHHHHHHHT
T ss_pred cCCCCcceEEEEEeC----CcEEEEEeCcH-HHHHHHHHHHHHhc
Confidence 2344 3344 79999999975 99999999998863
No 81
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=99.09 E-value=4.1e-10 Score=105.70 Aligned_cols=94 Identities=20% Similarity=0.285 Sum_probs=74.3
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvi 93 (668)
..+..|+|.|||+++ +| ..|++|||+|+.+.++||-++.... ..|.|.++.++.+.... .+.|++.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kG---l~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~-~~~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KG---LFARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKN-FKTFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ET---TEEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESS-SSEEEEE
T ss_pred CCCCcEEEEEEEEec-cc---CcceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcC-CCEEEEE
Confidence 367889999988844 34 2399999999999889998887543 56678888877765544 3455666
Q ss_pred ccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 94 t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
++ +|+|+|.+. ...+++|++||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 77 799999997 88999999999999863
No 82
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.08 E-value=5.8e-10 Score=114.34 Aligned_cols=107 Identities=23% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCce--eeeecCCceEEEE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVL 93 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s--v~~~~~kk~~fvi 93 (668)
+....++|||| +++.+.++|+||||+|+++.|+||+......+.. ....+.+.++++-.... -.....+.++|.|
T Consensus 129 s~~P~~~G~L~--~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~-l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~i 205 (256)
T 3hk0_A 129 SSSPEIQGFLH--VKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRH-LQLLADLEDSNIFSLIAGRKQYNAPTDHGLCI 205 (256)
T ss_dssp TSCEEEEEEEE--EECTTSSCEEEEEEEEETTEEEEESSTTCCCGGG-EEEEECCTTEEEEEESSTHHHHCCSSSEEEEE
T ss_pred CCCCcceeEEE--EecCCCCcceEEEEEEeCCEEEEEecCCCCcccc-ceEEEEcCCCEEEEecccccccCCCCCCEEEE
Confidence 34567899888 4444469999999999999999998665332211 11112333333322110 0012234688888
Q ss_pred ccCCC---CCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 94 FPDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 94 t~~~~---~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.+... ....|||||++++++..|+.||+.|..
T Consensus 206 k~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 206 KPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp EETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 75322 135799999999999999999999875
No 83
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=99.04 E-value=4.9e-10 Score=116.22 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=64.8
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-------ecCCce
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKL 89 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-------~~~kk~ 89 (668)
....++|||| +++.+.++|+||||+|+++.|+||+......++. . .+.+.+.++..... ...+.+
T Consensus 156 ~~pe~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~-l-----~~l~~L~~~~VY~~~~~kkk~kaPt~~ 227 (281)
T 4gmv_A 156 TVPEIEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRD-L-----VCFLQLDHVNVYYGQDYRNKYKAPTDY 227 (281)
T ss_dssp CCCCCEEEEE--EECTTSSCEEEEEEEECSSCEEEC---------C-C-----EEEECGGGCEEEEESSHHHHTCCSCSC
T ss_pred CCCccEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCcccc-c-----eEEEEcCCcEEEEecccccccCCCCCc
Confidence 3456899887 4544468999999999999999998655432211 1 11223433222111 234568
Q ss_pred EEEEccCC---CCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 90 ~fvit~~~---~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+|.|.+.. ....+|+|||++++++..|+.||+-|..
T Consensus 228 ~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 228 CLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp EEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 89887532 2346899999999999999999998875
No 84
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.91 E-value=3.6e-09 Score=100.08 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=69.3
Q ss_pred EEeeeeee-ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee--eecCCceEE-EEccC
Q 005939 21 KSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLT-VLFPD 96 (668)
Q Consensus 21 KeGyL~l~-Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--~~~~kk~~f-vit~~ 96 (668)
-.+||-+. -++...|+||+||||++++.|+|||++.+.. +. +++.|.|.+|.... .....++.+ .+.|.
T Consensus 49 L~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--ge-----P~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~ 121 (173)
T 4f7h_A 49 LADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GT-----PAHQMNLRGCEVTPDVNISGQKFNIKLLIPV 121 (173)
T ss_dssp EEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SC-----CSEEEECTTCEEEEEEETTTTEEEEEEEEEE
T ss_pred hHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CC-----CceEEecCceEEeccccccccceeEEEeccC
Confidence 55877543 3566789999999999999999999988743 22 45556666655421 123444433 23343
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
..+...|+|.|+|+..+.+||.|++-|-.
T Consensus 122 ~~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 122 AEGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 33458899999999999999999987753
No 85
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.87 E-value=5.6e-09 Score=97.75 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=65.1
Q ss_pred EEeeeeeee-cCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceee--eecCCceEEEE-ccC
Q 005939 21 KSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVL-FPD 96 (668)
Q Consensus 21 KeGyL~l~K-kg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--~~~~kk~~fvi-t~~ 96 (668)
-+|||-+.+ ++...|+||+||||+++..|+|||++.+.. +. +++.|.|.+|.... .....++.+.+ .+.
T Consensus 28 L~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--ge-----P~~~inLrGCEVtPDVnva~~Kf~ikL~ip~ 100 (165)
T 4bbk_A 28 LADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GE-----PIEKLNLRGCEIVPDVNVSGRKFGIKLLIPV 100 (165)
T ss_dssp EEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SC-----CSEEEECTTCEEEEEEETTTTEEEEEEEEEE
T ss_pred hHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CC-----CceEEecCccEEecccccccceeeEEEecCC
Confidence 558775433 556799999999999999999999998754 32 45556666654421 12345554433 333
Q ss_pred CCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 97 ~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
..+...++|.|+|+.+..+||.|++-|-.
T Consensus 101 ~~gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 101 ADGMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCcceeeeeecCCHHHHHHHHHHhhhccc
Confidence 22346899999999999999999997753
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.60 E-value=1.8e-07 Score=84.79 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=74.8
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--------
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------- 85 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-------- 85 (668)
..++.++|+| |+...+...+.|||+|++|+..++.+|+++.... ..+.|.|.....+....
T Consensus 3 ~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~~ 71 (125)
T 2coa_A 3 SGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPG 71 (125)
T ss_dssp CCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTT
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCCC
Confidence 4678899999 6557777788999999999999999999987765 45557777665554421
Q ss_pred CCceEEEEccCCCCCceEEEEec---C--------hHHHHHHHHHHHHHHh
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAE---T--------SEDLYEWKTALELALA 125 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAe---S--------~eE~~eWi~AL~~ai~ 125 (668)
...+||.|... .++||+.++ . .+.+..|..||++|+-
T Consensus 72 ~~~hcFEi~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 72 TNPHCFEIVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp SCCEEEEEECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCceEEEEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 13378877652 789999874 1 2569999999999984
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=6.5e-07 Score=81.35 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee--------c
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--------~ 85 (668)
..++.|+|+||+ ......-+.|||+|++|+..+|.+|+++.... ..+.|.|...-.+... .
T Consensus 3 ~~~s~vlkeGWm--VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEGWM--VHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEEEE--EEEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecceE--EEEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 467889999954 45555567899999999999999999987655 3344555554433221 1
Q ss_pred CCceEEEEccCCCCCceEEEEecC---------------hHHHHHHHHHHHHHHh
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS---------------~eE~~eWi~AL~~ai~ 125 (668)
...+||.+.. ...+||+.++. .+.+..|..||++|+-
T Consensus 72 ~~phcFEi~T---~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIIT---DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEEC---SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEE---CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 1237787754 27899988743 6899999999999985
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.88 E-value=0.0002 Score=65.24 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=68.4
Q ss_pred CCCCcEEEEeeee-eeec-----CCCCCCcEEEEEEEeC------CeEEEEeCCCCCCCCCCccceeeeCcE-EcCCCce
Q 005939 14 GASNTVFKSGPLF-ISSK-----GIGWKSWKKRWFILTR------TSLVFFKNDPSALPQRGGEVNLTLGGI-DLNNSGS 80 (668)
Q Consensus 14 ~~~~~V~KeGyL~-l~Kk-----g~~~k~WKKRWFVL~~------~~L~YYKd~~~~~p~~~~e~~l~L~~I-~L~~~~s 80 (668)
...-.++|+|.|. +... ......|.|+|++|+. -.|-||..++..+|+.+. ++..| .+..++.
T Consensus 13 ~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i----~cs~I~EVR~tt~ 88 (136)
T 1v5m_A 13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSI----PLSAIIEVRTTMP 88 (136)
T ss_dssp CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCE----ETTTCCBCCCCCC
T ss_pred cccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCcccc----chhhhhhhhhccc
Confidence 3445688999773 2221 2346899999999975 246688777766644422 22221 2222222
Q ss_pred eeeecCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 81 v~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
..- .++...|++.. .++..|+|.|.++.+++.|+..|+..+..
T Consensus 89 LEm-PD~~nTFVlK~--~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 89 LEM-PEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SSS-CCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCccceEEEEe--cCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 111 34556777754 44669999999999999999999998863
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.76 E-value=4.3e-05 Score=76.76 Aligned_cols=40 Identities=25% Similarity=0.616 Sum_probs=33.3
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCC
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA 58 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~ 58 (668)
..+.++|||+ |+|+..++|++|||||+++.|.||+.....
T Consensus 19 ~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 19 GSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp --CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCCc
Confidence 3567899777 778889999999999999999999976653
No 90
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.52 E-value=0.0004 Score=67.67 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=67.8
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEcc
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~ 95 (668)
....+++|.|.++... +.|+.+|++|=...|+|-+.......-.... . .-..|.+.....-....+++.+|+|..
T Consensus 68 ~R~Ll~eG~L~~k~~~---~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~-~-~~pvi~L~~~~vre~a~d~~~~fli~~ 142 (185)
T 2lg1_A 68 RKKLVRDGSVFLKNAA---GRLKEVQAVLLTDILVFLQEKDQKYIFASLD-Q-KSTVISLKKLIVREVAHEEKGLFLISM 142 (185)
T ss_dssp TSCEEEEEEEEEECTT---CCEEEEEEEEESSEEECCEEETTEEECCCCS-S-SCSEEESSSCEEECCSSCSSEEEEECC
T ss_pred CCceeeeceEEEeccC---CCeeeEEEEeecCEEEEEEecCCEEEEEccc-C-CCCeEeecceEEeccCCCCCeEEEEEe
Confidence 3679999988533222 3699999999998887765332211000000 0 001133333222111235667788875
Q ss_pred CCCCCceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 96 ~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
...+.+.|.|+|.|..++..|+.+|+.|+...|.
T Consensus 143 ~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~~ 176 (185)
T 2lg1_A 143 GMTDPEMVEVHASSKEERNSWIQIIQDTINTLNR 176 (185)
T ss_dssp SSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCCh
Confidence 4344689999999999999999999999976543
No 91
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.45 E-value=0.00028 Score=69.97 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=61.4
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCC-------eEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCc
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKK 88 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~-------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk 88 (668)
...++.+|++ +-+. .|.||+|||||+.- .|..||+.++....+....++.|..|.=- .+...-+.+.
T Consensus 6 ~~~~v~eg~v--k~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~Gl--E~g~~ldk~s 79 (224)
T 3ml4_A 6 TEAALVEGQV--KLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGL--EPALPYEGLA 79 (224)
T ss_dssp -CCCSEEEEE--EEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEE--EEEEEETTEE
T ss_pred ccceeEEEee--eeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCc--cccccccCcc
Confidence 4567788944 3333 35899999999871 67899988774433333333444332211 1111122333
Q ss_pred -eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 89 -LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 89 -~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.+-+|+. ..++.|.+++.+.+.+|-..|+..+..
T Consensus 80 ~TlAIIc~----d~~~vLAFds~e~l~~W~~~l~~slGe 114 (224)
T 3ml4_A 80 HTLAIICL----SQAVMLGFDSHEAMCAWDTRIRYALGE 114 (224)
T ss_dssp EEEEEEES----SCEEEEECSSHHHHHHHHHHHHHHTSS
T ss_pred cEEEEEec----CcEEEEEeCCHHHHHHHHHHHhhccCC
Confidence 3344444 578899999999999999999886643
No 92
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=97.06 E-value=0.0035 Score=66.96 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc----cceee-----eCcEEcCCCceeeeec
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----EVNLT-----LGGIDLNNSGSVVVRE 85 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~----e~~l~-----L~~I~L~~~~sv~~~~ 85 (668)
.....+++|.|..... .+.|+.|||.|=.+.|.|-+.......-+.. ..+.. ...|.+..........
T Consensus 255 ~~r~li~eG~l~~~~~---~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~ 331 (377)
T 3p6a_A 255 TKKKLVHEGPLTWRVT---KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT 331 (377)
T ss_dssp TTSCEEEEEEEEEESS---SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTT
T ss_pred ccceEEEECCcEEEec---CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccccc
Confidence 3467999997743221 2378999999999999998855321100000 00000 0013333321111233
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
+.+.+|++.........|.|+|.|.++++.|+..|++|+...
T Consensus 332 ~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 332 DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp CTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred ccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 455677776544456889999999999999999999999743
No 93
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=97.03 E-value=0.0033 Score=68.23 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=66.0
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCC--------CCcc-ceeeeCcEEcCCCceeeeecC
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------RGGE-VNLTLGGIDLNNSGSVVVRED 86 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~--------~~~e-~~l~L~~I~L~~~~sv~~~~~ 86 (668)
....+++|.|.+. .. ...|+.|||.|=.+.|+|-+.......- +... .......|.+..........+
T Consensus 292 ~r~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~ 368 (418)
T 3t06_A 292 TRKMIHEGPLTWR--IS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD 368 (418)
T ss_dssp GSCEEEEEEEEEC--CB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC
T ss_pred cceeEEeceEEEE--eC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccccc
Confidence 4679999977532 21 2358999999999999998865321100 0000 000011233333222112234
Q ss_pred CceEEEEccCCCC-CceEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005939 87 KKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (668)
Q Consensus 87 kk~~fvit~~~~~-gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~ 129 (668)
.+.|+++.....+ .+.|.|+|.|.++.+.|+.+|+++++.++.
T Consensus 369 ~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~ 412 (418)
T 3t06_A 369 KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHH 412 (418)
T ss_dssp SSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred CceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence 5556666532222 279999999999999999999999986543
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=97.00 E-value=0.0029 Score=71.33 Aligned_cols=113 Identities=15% Similarity=0.191 Sum_probs=67.1
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC--------ccce-eeeCcEEcCCCceeeeec
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------GEVN-LTLGGIDLNNSGSVVVRE 85 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~--------~e~~-l~L~~I~L~~~~sv~~~~ 85 (668)
.....+++|.|... .. ...|+.|||+|=.+.|+|.+...+...-+. .... .....|.+..........
T Consensus 408 ~~R~LI~eG~l~~~--~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~ 484 (536)
T 3odw_A 408 TKKKLVHEGPLTWR--VT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT 484 (536)
T ss_dssp TTSCEEEEEEEEEE--SC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTT
T ss_pred ccceeeeecceEEE--ec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecccc
Confidence 35679999977432 21 236899999999999999886543110000 0000 000113333322211224
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap~~ 130 (668)
+.+.+|++.........|.|+|.|.+|++.|+.+|+.||..+..+
T Consensus 485 d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~ 529 (536)
T 3odw_A 485 DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP 529 (536)
T ss_dssp CTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred cCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence 456677776544456899999999999999999999999866543
No 95
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.86 E-value=0.0034 Score=57.82 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=60.3
Q ss_pred CcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecChHHHHH
Q 005939 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYE 115 (668)
Q Consensus 36 ~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~eE~~e 115 (668)
.=+-|||+|=.+.|.|.+...... .-.-.-.+++.++.+.... .....+++|.|+. ....++.|.|.|.+|+++
T Consensus 43 ~~~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~e---d~~~~~~aFeI~g--~~~~~i~v~~~s~eE~~~ 116 (132)
T 1v61_A 43 EKEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLD---EIEGSDCMFEITG--STVERIVVHCNNNQDFQE 116 (132)
T ss_dssp CCCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTC---SSSSSCCCEEEEC--SSSCEEEECCCCSHHHHH
T ss_pred cceEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEecc---ccccCccEEEEec--CCCceEEEEeCCHHHHHH
Confidence 347899999999998887543211 1111223455666655421 1234567888874 335889999999999999
Q ss_pred HHHHHHHHHhhCCc
Q 005939 116 WKTALELALAQAPS 129 (668)
Q Consensus 116 Wi~AL~~ai~~ap~ 129 (668)
|+.+|+.++..||.
T Consensus 117 Wl~~L~~~i~~~~~ 130 (132)
T 1v61_A 117 WMEQLNRLTKSGPS 130 (132)
T ss_dssp HHHHHHHHHTTSCS
T ss_pred HHHHHHHHHhhccc
Confidence 99999999987763
No 96
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.58 E-value=0.014 Score=52.07 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=61.5
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--CCceEE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLT 91 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~f 91 (668)
.++..++++|.|...-.. ..+.=+++||.|=+..|.|-+-..... +. .. ....+.+.....+...+ .-+.+|
T Consensus 3 ~pgR~lv~eG~l~el~~~-~~k~~~~v~~FLfND~Ll~a~~~~~~~---~~-~~-~~~~~~L~~~~v~d~~d~~~~~n~f 76 (113)
T 1zc3_B 3 TPGQYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQRR---GM-YR-YNALYPLDRLAVVNVKDNPPMKDMF 76 (113)
T ss_dssp --CCCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCTT---SC-EE-EEEEEETTTCEEEEECCBTTBSSEE
T ss_pred CCCeEEEEeCcEEEEccc-cCCCCccEEEEecCCEEEEEEEeccCc---cc-EE-EEEEEEcccCEEEECCCCcccceEE
Confidence 356778999976532221 112235678888888888876543211 11 11 12234555544332222 223445
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.|... .+.|.|+|++.+|..+|+.+|++|+.
T Consensus 77 ~i~~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 77 KLLMF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 44431 57899999999999999999999985
No 97
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.42 E-value=0.02 Score=60.81 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=65.0
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCC-----C---CCccce-eeeCcEEcCCCceeeeecC
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----Q---RGGEVN-LTLGGIDLNNSGSVVVRED 86 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p-----~---~~~e~~-l~L~~I~L~~~~sv~~~~~ 86 (668)
....+++|.|.. +. ..+.|+.|||.|=.+.|.|-+....... + +..... ...+.|.+..........+
T Consensus 250 ~R~li~~G~l~~--~~-~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~ 326 (368)
T 1xcg_A 250 TRKMIHEGPLTW--RI-SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD 326 (368)
T ss_dssp GSCEEEEEEEEE--CC-SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC
T ss_pred cceEEeecceEe--ee-cCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccCC
Confidence 467899997653 22 2356899999999999998876532100 0 000000 0012234433221111234
Q ss_pred CceEEEEccCCCC-CceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~fvit~~~~~-gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
++.++++.....+ .+.|.|+|.|.+++..|+.+|+.|+..|
T Consensus 327 ~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~a 368 (368)
T 1xcg_A 327 KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 368 (368)
T ss_dssp SSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 4555566542222 4789999999999999999999998643
No 98
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=96.40 E-value=0.0076 Score=64.66 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=66.3
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCC----------CCccceeeeCcEEcCCCceeeeec
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----------RGGEVNLTLGGIDLNNSGSVVVRE 85 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~----------~~~e~~l~L~~I~L~~~~sv~~~~ 85 (668)
....+++|.|... .. ...++.|||.|=.+.|.|-+...+.... ..+. ....+.|.+..........
T Consensus 254 ~R~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~ 329 (385)
T 1txd_A 254 KRKMIHEGPLVWK--VN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSK-HTFSPVIKLSTVLVRQVAT 329 (385)
T ss_dssp GSCEEEEEEEEEE--SS-SSCBCCEEEEEESSEEEEEEEETTEEECCC--------------CCCSEEEGGGEEEEECCC
T ss_pred cceEEEECcEEEE--cC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCC-cCCCCceeccccccccccc
Confidence 4578999977532 21 2468999999999999887754321100 0000 0001223443322111223
Q ss_pred CCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhCC
Q 005939 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (668)
Q Consensus 86 ~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ap 128 (668)
+.+.+|+++....+.+.|.|+|.|.++.+.|+.+|+.++....
T Consensus 330 d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 330 DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp -CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 3456677765433468999999999999999999999997543
No 99
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.017 Score=62.90 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeee-ecCCceEEE
Q 005939 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTV 92 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~fv 92 (668)
.++...+++|.|..... +.|+.|||.|=.+.|+|-+...... .. ....|.+........ ....++.|.
T Consensus 239 ~~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~------y~-~k~~i~L~~l~v~~~~~~~~~~~f~ 307 (434)
T 3mpx_A 239 QPGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK------YR-LKNTLAVANMKVSRPVMEKVPYALK 307 (434)
T ss_dssp CTTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC------EE-EEEEEEC-----CCCCCTTSCSEEE
T ss_pred cCCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe------EE-EEEEEEcCCcEEEecCCCCCCeeEE
Confidence 34567899997754322 3589999999999999998543211 11 123344444222111 123456666
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
+.. ..+.|.|+|.|.+++..|+.+|+.+|...
T Consensus 308 i~~---~~~~~~l~a~s~~ek~~W~~~i~~ai~e~ 339 (434)
T 3mpx_A 308 IET---SESCLMLSASSCAERDEWYGCLSRALPED 339 (434)
T ss_dssp EEC---SSCEEEEECSSHHHHHHHHHHHHHC----
T ss_pred Eec---CCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 643 25789999999999999999999999643
No 100
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=95.98 E-value=0.046 Score=56.76 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=63.0
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccC-
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD- 96 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~- 96 (668)
..+..|.+.........+.++.|||.|=.+.|.|-+...... +.... ...+.|.+...............|.+...
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y-~~k~~i~l~~~~v~e~~~~~~~~F~i~~~~ 278 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKY-LYKSKLFTSELGVTEHVEGDPCKFALWVGR 278 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEE-EEEEEEEGGGEEEECCCTTCTTEEEEEESS
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCcee-EEeeeeeccceeeEEccCCCCceEEEEeCC
Confidence 366777554332222245679999999999999887543211 11111 11223444432221112223445655431
Q ss_pred -CCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 97 -GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 97 -~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
......|.|+|.|.+++..|+.+|+.++.++
T Consensus 279 ~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 279 TPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp SCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 1235789999999999999999999999753
No 101
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.95 E-value=0.051 Score=57.39 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCC--CC-CCccceeeeCcEEcCCCceeeeec--CCce
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQ-RGGEVNLTLGGIDLNNSGSVVVRE--DKKL 89 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~--p~-~~~e~~l~L~~I~L~~~~sv~~~~--~kk~ 89 (668)
+....+++|.|. +.| .++.|||.|=.+.|.|-|...... +. .+... ...+.|.+.........+ .-+.
T Consensus 243 ~~r~li~eG~l~--~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y-~~k~~i~l~~~~v~~~~d~~~~~~ 315 (354)
T 1dbh_A 243 CCNEFIMEGTLT--RVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEY-RLKEKFFMRKVQINDKDDTNEYKH 315 (354)
T ss_dssp TCCCEEEEEEEE--ETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSE-EEEEEEESCSCEEEECCCSSSCCS
T ss_pred ccceEEEEeeEE--EEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcce-eEEEEEeccceEEEeCCcccccCc
Confidence 356789999665 333 578999999999999888653211 10 01111 123446666544322222 2245
Q ss_pred EEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 90 ~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.|.+... ++..|.|+|.|.++...|+.+|+.+..+
T Consensus 316 ~F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 316 AFEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred cEEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 6666542 2578999999999999999999999764
No 102
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.75 E-value=0.052 Score=49.48 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=30.2
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
..+|.|...+ ..++..|.|.|.++++.|+..|+..+...
T Consensus 85 ~~~FsIiy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 85 DRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGEEEEEESS-SCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred cceEEEEECC-CCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 4667666542 24799999999999999999999998644
No 103
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.67 E-value=0.048 Score=63.78 Aligned_cols=100 Identities=29% Similarity=0.435 Sum_probs=64.2
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEc-cC
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PD 96 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit-~~ 96 (668)
.|+..|||-+...+....+=|.+||||+..+|.|||++.... ....+++.+..+..... ....+++.|.++ +.
T Consensus 539 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 612 (772)
T 3zvr_A 539 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEK--GFMSSKHIFALFNTE 612 (772)
T ss_dssp CEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETT
T ss_pred cceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhh--ccccccccccccCCc
Confidence 399999887766666556679999999999999999976543 23344555555443221 012344555443 33
Q ss_pred CC----CCceEEEEecChHHHHHHHHHHHHH
Q 005939 97 GR----DGRAFTLKAETSEDLYEWKTALELA 123 (668)
Q Consensus 97 ~~----~gr~y~fqAeS~eE~~eWi~AL~~a 123 (668)
.+ +-+..-|.|+|.++...|+..+-+|
T Consensus 613 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 613 QRNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SSCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhccccccchhhHHhhhhc
Confidence 32 2367899999999999999887544
No 104
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.47 E-value=0.07 Score=56.56 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=62.4
Q ss_pred CcEEEEeeeeeeec--CC-CCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCc-cceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 17 NTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGG-EVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 17 ~~V~KeGyL~l~Kk--g~-~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~-e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
...++.|.+++... |. ..+.++.|||.|=.+.|.|-+....... ++. ..-.....|.+............+..|.
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~F~ 283 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR-GGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFA 283 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC---------CCEEEEEEEEGGGEEEEESGGGCTTEEE
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCC-CCCCCceEEcceeeccceeeeeccCCCCceEE
Confidence 35788897765431 11 2356899999999999999876543110 100 0011122344443222111122234455
Q ss_pred EccCCC--CCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 93 LFPDGR--DGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 93 it~~~~--~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+...++ ....|.|+|.|.++...|+.+|++++..
T Consensus 284 i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 284 LTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp EEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 543322 2478999999999999999999999963
No 105
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.46 E-value=0.16 Score=55.74 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--------CC
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--------DK 87 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--------~k 87 (668)
....+++|.|..... ....++.|||.|=.+.|.|-|...... . .....+.|.+.........+ .-
T Consensus 331 ~r~li~~G~l~~~~~--~~~~~~~r~~fLF~d~Ll~~k~~~~~~----~-~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~ 403 (466)
T 2pz1_A 331 SSELIYSGELTRVTQ--PQAKSQQRMFFLFDHQLIYCKKDLLRR----D-VLYYKGRLDMDGLEVVDLEDGKDRDLHVSI 403 (466)
T ss_dssp CSCEEEEEEEEEECT--TTCCEEEEEEEEETTEEEEEEECSSCT----T-CEEEEEEEETTTCEEEECCSBSCCSSCCCB
T ss_pred cceeEEeeeEEEEec--CCCCeeEEEEEEECCEEEEEEeccccC----C-ceEEeeeeeccceEEEeCCCCccccccccc
Confidence 456899997653322 234689999999999999988543211 1 11122335555433222111 11
Q ss_pred ceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
+..|.+... .....|.|+|.|.++...|+.+|+.++...
T Consensus 404 ~~~F~i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~ 442 (466)
T 2pz1_A 404 KNAFRLHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQV 442 (466)
T ss_dssp CEEEEEECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 345665532 235799999999999999999999998744
No 106
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=95.28 E-value=0.14 Score=55.22 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=61.4
Q ss_pred cEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec------CCceEE
Q 005939 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLLT 91 (668)
Q Consensus 18 ~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~------~kk~~f 91 (668)
..+++|.|.+.. ...+.++.||+.|=.+.|.|-+..... .. ....|.+.......... .-...|
T Consensus 233 rli~~G~l~~~~--~~~~~~~~~~~fLF~d~Ll~~k~k~~~-------y~-~k~~i~l~~~~v~~~~~~~~~~~~~~~~F 302 (406)
T 2vrw_B 233 RPKIDGELKITS--VERRSKTDRYAFLLDKALLICKRRGDS-------YD-LKASVNLHSFQVRDDSSGERDNKKWSHMF 302 (406)
T ss_dssp SEEEEEEEEEEC--SSCCSCEEEEEEEESSEEEEEEEETTE-------EE-EEEEEETTTEEEEC--------CTTCEEE
T ss_pred cccccccEEEEe--cCCCccceEEEEecCCEEEEEEecCCc-------eE-EEEEecccceeeeecCCCCccCCccceee
Confidence 378999765432 223568999999999999988764221 11 11223333322111111 112455
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+... ...+.|.|+|.|.++...|+.+|+.++...
T Consensus 303 ~i~~~-~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 303 LLIED-QGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp EEEET-TCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEec-CCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 55432 235789999999999999999999999753
No 107
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.25 E-value=0.1 Score=48.27 Aligned_cols=105 Identities=13% Similarity=-0.024 Sum_probs=60.9
Q ss_pred CcEEEEeeeeee--ecCCCCCCcEEEEEEEeCCeEEEEeCCCCCC--CCCCccceeeeCcEEcCCCceeeeecCCceEEE
Q 005939 17 NTVFKSGPLFIS--SKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (668)
Q Consensus 17 ~~V~KeGyL~l~--Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fv 92 (668)
...+..+-||-- .-....++-+.|+|.|=++.|.|-|--+... ....-...+++.|+.+..... ..-.++|.
T Consensus 11 Rrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~ 86 (140)
T 3qwm_A 11 RRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIR 86 (140)
T ss_dssp CCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEE
T ss_pred ceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEE
Confidence 346777766521 1111234568999999999999986322111 111112233444444332111 22345555
Q ss_pred EccCCC---CCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 93 LFPDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 93 it~~~~---~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+..... ..+++.|+|.|..|+.+|+.+|+.+|.
T Consensus 87 l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 87 LTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp EEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 543221 237899999999999999999999996
No 108
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.21 E-value=0.15 Score=55.07 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec--C------
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--D------ 86 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~------ 86 (668)
+....+++|.|..... ....++.|||.|=.+.|.|-+...... ... ...+.|.+.........+ .
T Consensus 253 ~~r~Li~~G~l~~~~~--~~~k~~~r~~fLF~d~Ll~~k~~~~~~----~~~-~~k~~i~l~~~~v~~~~d~~~~~~~~~ 325 (402)
T 2dfk_A 253 RSSELIYTGEMAWIYQ--PYGRNQQRVFFLFDHQMVLCKKDLIRR----DIL-YYKGRIDMDKYEVIDIEDGRDDDFNVS 325 (402)
T ss_dssp TCCCEEEEEEEEEESS--TTCCCEEEEEEEETTEEEEEEECSSCT----TCE-EEEEEEEGGGEEEEECCSEECSSSCCE
T ss_pred cccceEEeceEEEEec--cCCceEEEEEEeeCCEEEEEEeccccC----Cce-EEeeeeeccceEEEecCCCCccccccc
Confidence 4567899997753322 123589999999999999988543211 111 111233333322111111 0
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
-+..|.+... ..+..|.|+|.|.++...|+.+|+.++...
T Consensus 326 ~~~~F~i~~~-~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~ 365 (402)
T 2dfk_A 326 MKNAFKLHNK-ETEEVHLFFAKKLEEKIRWLRAFREERKMV 365 (402)
T ss_dssp ESSEEEEEES-SSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 1235555432 235799999999999999999999998754
No 109
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.09 E-value=0.21 Score=52.83 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=64.0
Q ss_pred cEEEEeeeeee---ecCC------CCCCcEEEEEEEeCCeEEEEeCCCCCCC--CCCccceeeeCcEEcCCCceeeeecC
Q 005939 18 TVFKSGPLFIS---SKGI------GWKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVRED 86 (668)
Q Consensus 18 ~V~KeGyL~l~---Kkg~------~~k~WKKRWFVL~~~~L~YYKd~~~~~p--~~~~e~~l~L~~I~L~~~~sv~~~~~ 86 (668)
..+++|.|.+. ++|. ....++.|||.|=.+.|.|-|....... .+..... ....|.+..........+
T Consensus 209 ~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~e~~~~ 287 (353)
T 1kz7_A 209 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYS-YKQSLNMTAVGITENVKG 287 (353)
T ss_dssp CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEE-EEEEEEGGGEEEECCBTT
T ss_pred hhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEE-EEEEeEcccceeeEcCCC
Confidence 48899977542 2331 0235899999999999998876542110 0011111 112344443222111122
Q ss_pred CceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 87 kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+..|.+...+ ....|.|+|.|.++...|+.+|+.++...
T Consensus 288 ~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 327 (353)
T 1kz7_A 288 DTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTSQ 327 (353)
T ss_dssp BTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 34456554432 25789999999999999999999999643
No 110
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=94.60 E-value=0.16 Score=53.26 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec---------
Q 005939 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--------- 85 (668)
Q Consensus 15 ~~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--------- 85 (668)
+....+++|.|. +++ .+.|||.|=.+.|.|-+...... .....+....|.+.........+
T Consensus 228 ~~r~li~~G~l~--~~~-----~~~~~~fLF~d~Ll~~k~~~~~~---~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~ 297 (346)
T 2z0q_A 228 SSRVLCCHGELK--NNR-----GVKLHVFLFQEVLVITRAVTHNE---QLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSL 297 (346)
T ss_dssp TCCCEEEEEEEE--ETT-----SCEEEEEEESSEEEEEEEEEETT---EEEEEESSCCEEGGGCEEEECCTTTSCCCSCC
T ss_pred CCeEEEEeceeE--ECC-----CcEEEEEECCCcEEEEEEeccCC---ceeeeeecCCcchhhceeeecCCCccccCccc
Confidence 345678999664 322 27899999999998887532110 00111111223333322111111
Q ss_pred --------CCceEEEEccC-CCCCceEEEEecChHHHHHHHHHHHHHH
Q 005939 86 --------DKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (668)
Q Consensus 86 --------~kk~~fvit~~-~~~gr~y~fqAeS~eE~~eWi~AL~~ai 124 (668)
..+++|.+... ...+..|.|+|.|.++...|+.+|+.|+
T Consensus 298 ~g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 298 RGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp --CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 12345666432 2236899999999999999999999986
No 111
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.69 E-value=0.23 Score=56.23 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=59.9
Q ss_pred EEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee----c--CCceEEE
Q 005939 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----E--DKKLLTV 92 (668)
Q Consensus 19 V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~----~--~kk~~fv 92 (668)
.+++|.|.+. ....+.++.|||.|=.+.|.|-|...... . ....|.+......... . .-++.|.
T Consensus 406 ll~~G~l~~~--~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y-------~-~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~ 475 (587)
T 3ky9_A 406 PKIDGELKIT--SVERRSKMDRYAFLLDKALLICKRRGDSY-------D-LKDFVNLHSFQVRDDSSGDRDNKKWSHMFL 475 (587)
T ss_dssp EEEEEEEEEE--CSSCCSCEEEEEEEETTEEEEEEEETTEE-------E-EEEEEEGGGEEEEEC-----CCCTTCEEEE
T ss_pred eEEEeeEEEE--eccCCCcceEEEEEECCEEEEEEecCCEE-------E-eeeeechhhceeeecCCCCcccccccceeE
Confidence 7899976543 23346789999999999999987652211 1 1223334332221111 1 1224455
Q ss_pred EccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 93 it~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
+... .+.+.|.|+|.|.+++..|+.+|+.++..
T Consensus 476 i~~~-~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 476 LIED-QGAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp EEET-TC---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEc-CCCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 5432 22478999999999999999999999964
No 112
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=93.13 E-value=0.27 Score=56.80 Aligned_cols=99 Identities=21% Similarity=0.349 Sum_probs=60.6
Q ss_pred CCCCcEEEEeeeeeeecC-CCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeee-cCCceEE
Q 005939 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (668)
Q Consensus 14 ~~~~~V~KeGyL~l~Kkg-~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~f 91 (668)
.....+++.||+. |.+ .....|++|++.|..+.+.++..... + . ..+.+.....+... .....++
T Consensus 554 ~~~~~~i~~G~~~--k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~--~---~------~l~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEA--P---Q------SLLTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEEEEE--EC-------CEEEEEEEETTEEEEECTTSC--C---C------EEEEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeecccc--cCCCcccchhhhhccccCCCcccccccCCC--C---c------ceeeeccccccccCcCCCCcce
Confidence 3456788999665 444 34678999999999999888743221 1 1 11333332222111 1223344
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+. ..++++|++++.+..++.+|...|+.+-..+
T Consensus 621 ~~~--~k~~k~f~~~t~~~~~~~~W~~~i~~~~~~~ 654 (689)
T 3v5w_A 621 LLK--IRGGKQFILQCDSDPELVQWKKELRDAYREA 654 (689)
T ss_dssp EEE--ETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred eee--ecCCcEEEEECCChHHHHHHHHHHHHHHHHH
Confidence 443 3568999999999999999999999877533
No 113
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=93.00 E-value=0.018 Score=63.81 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=0.0
Q ss_pred CcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC----------ccceeeeCcEEcCCCceeee--e
Q 005939 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG----------GEVNLTLGGIDLNNSGSVVV--R 84 (668)
Q Consensus 17 ~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~----------~e~~l~L~~I~L~~~~sv~~--~ 84 (668)
...+++|.|.+. ++++.|||.|=.+.|.|.+..+......+ ....+....|.+........ .
T Consensus 251 r~li~eG~l~~~------~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~ 324 (510)
T 3jzy_A 251 RKLLHSGKLYKT------KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDP 324 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEEc------CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCC
Confidence 456788866522 45789999999999999874443210000 00111111233333221111 1
Q ss_pred cCCceEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 85 ~~kk~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
...+++|.+... .++|+|+|.|.+++..|+.+|+.++...
T Consensus 325 ~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 325 SSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp -------------------------------------------
T ss_pred Cccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 233456666542 5799999999999999999999998754
No 114
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=92.51 E-value=0.25 Score=60.00 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=63.5
Q ss_pred CCcEEEEeeeeeeecCCCCCCcEEEEEEEeCCeEEEEeCCCCCCCCCC--ccceeeeCcEEcCCCceeeeec--CCceEE
Q 005939 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--GEVNLTLGGIDLNNSGSVVVRE--DKKLLT 91 (668)
Q Consensus 16 ~~~V~KeGyL~l~Kkg~~~k~WKKRWFVL~~~~L~YYKd~~~~~p~~~--~e~~l~L~~I~L~~~~sv~~~~--~kk~~f 91 (668)
....+++|.|. +.+. + +.|||.|=.+.|.|-|.........+ ...-.....|.+.........+ .-++.|
T Consensus 441 ~r~Li~eG~l~--~~~~--k--~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F 514 (1049)
T 3ksy_A 441 CNEFIMEGTLT--RVGA--K--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAF 514 (1049)
T ss_dssp CSCCCCEEEEE--ETTC--S--SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEE
T ss_pred cceEEEeceEE--EEcc--C--ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCccccceE
Confidence 45688999665 3332 1 78999999999999987643211101 0000112234444332211111 234566
Q ss_pred EEccCCCCCceEEEEecChHHHHHHHHHHHHHHhhC
Q 005939 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (668)
Q Consensus 92 vit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~a 127 (668)
.+.. .++..|.|+|.|.+++..|+.+|+.+..++
T Consensus 515 ~I~~--~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 515 EIIL--KDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp EECC--TTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 6654 335799999999999999999999887644
No 115
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=88.91 E-value=2.1 Score=45.23 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=24.5
Q ss_pred CceEEEEecChHHHHHHHHHHHHHHh
Q 005939 100 GRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 100 gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.+.|.|+|.|.++...|+.+|++++.
T Consensus 341 ~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 341 ERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999996
No 116
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=82.37 E-value=1.8 Score=31.83 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
|++.|.-|-++|.+|=.+||+-+..|+++||+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999999999984
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.11 E-value=3.7 Score=38.89 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005939 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (668)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (668)
-|-..|..-|.+|||||..||-||..||.-|.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~ 86 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRG 86 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777889999999999999999986553
No 118
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=79.97 E-value=3 Score=28.72 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-|-+.|-.+-..||++|+||++-|+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 5888889999999999999999998774
No 119
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=78.84 E-value=3.2 Score=28.39 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||.+|+||++-|+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4788888899999999999999998775
No 120
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=78.25 E-value=3.7 Score=28.25 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||.+|+||++-|+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 5788888899999999999999998774
No 121
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.23 E-value=9.2 Score=34.50 Aligned_cols=32 Identities=41% Similarity=0.495 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005939 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (668)
+.+++.|.+....|.++...||.|||+|+++-
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l 64 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQAEQDNL 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666653
No 122
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=76.85 E-value=3.1 Score=28.56 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||.+-+.|-.+-..||++|+||++-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5888999999999999999999998663
No 123
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=76.25 E-value=4.1 Score=28.43 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||++|+||++-|-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4777888888999999999999998763
No 124
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.48 E-value=4.8 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||++|+||++-|-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4778888899999999999999998764
No 125
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.24 E-value=5.9 Score=37.48 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=40.1
Q ss_pred HHHHhhhhhHHHHHHHHHH-------hhcchhhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 005939 583 AIQRLEITKNDLRHRIAKE-------ARGNAILQASLERRK----------QALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
.++-+|..-.|||.+++.- =+..+.|||.|+.=+ ..|..|..+|+.|+.|+.+.+++
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665321 256788999887533 57888999999999999886543
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.79 E-value=4.1 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||++|+||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4788888999999999999999998763
No 127
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.60 E-value=5.9 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
.||-+-+.|-.+-..||++|+||++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 477788888888999999999999865
No 128
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.46 E-value=16 Score=32.58 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 005939 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEVG 650 (668)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (668)
.|..-.+||.+|..-.+.||.|+..+..-+.++.+- |..+|.|+..|+..+..+--.|+-||.-
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ 91 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 355567889999888889999998887766666553 5667777777777777766667666653
No 129
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=70.18 E-value=7.4 Score=26.63 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
.||-+-+.|-.+-..||++|+||++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 477888888889999999999999865
No 130
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=68.60 E-value=5.6 Score=27.44 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.||-+-+.|-.+-..||.+|+||++-|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4777888888899999999999998764
No 131
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=65.66 E-value=23 Score=30.54 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhhHHHHHHH-HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
+-.+-+|||.+|.+-+..| .-|++..+||..-=++=|+-=.++|..++.+|.+.++.-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457799999999999999 569999999998877777777899999999999988764
No 132
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=65.43 E-value=7.8 Score=39.34 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=29.6
Q ss_pred CceEEEEccCCCCC-ceEEEEecChHHHHHHHHHHHHHHh
Q 005939 87 KKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 87 kk~~fvit~~~~~g-r~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+.++|.+.. .+| .+++|+|++..++.+|+.+|+.+|.
T Consensus 225 ~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 225 EPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp SSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 556676653 234 5689999999999999999999874
No 133
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.78 E-value=30 Score=34.59 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
.|+.||..-.++..+|..--+.=+.+++.++.++..|.+.+-.++..++.++.++.+-+.-|..|..++
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444432222224578889999999999999999999999999888777787777765
No 134
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=57.69 E-value=27 Score=31.02 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=51.4
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeec-CCceEEEEccCCCCCceEEE--EecChH-H
Q 005939 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVLFPDGRDGRAFTL--KAETSE-D 112 (668)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-~kk~~fvit~~~~~gr~y~f--qAeS~e-E 112 (668)
=+.|++.|=...|.|-|-.... +.+ .-.....|.++......... +....|.+..... ...|.+ +|.|.+ .
T Consensus 25 ~~eR~vFLFe~~ilf~K~~~~~---~~~-~Y~~K~~ikl~~~~lte~~~~~d~~kFeiw~~~~-~~~~il~~qA~s~e~~ 99 (119)
T 1fho_A 25 PKLRYVFLFRNKIMFTEQDAST---SPP-SYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEPGL-PSFRIKPKDFETSEYV 99 (119)
T ss_dssp CEEEEEEEETTEEEEEEECCSS---SSC-CCSSCCEEESSSCEEEEECTTCCEEEEECCSTTC-CCBCCCCCSSSSCSHH
T ss_pred cceEEEEEecCcEEEEEEecCC---CCC-cEEEeeEEeeceeEEEecCCCCCCcEEEEccCCC-CceEEEeeecCCcHHH
Confidence 4789999999999998866211 111 11122235555543322223 3345577654322 356778 999999 9
Q ss_pred HHHHHHHHHHHH
Q 005939 113 LYEWKTALELAL 124 (668)
Q Consensus 113 ~~eWi~AL~~ai 124 (668)
.+.|+..|+.++
T Consensus 100 K~~Wv~~I~~~~ 111 (119)
T 1fho_A 100 RKAWLRDIAEEQ 111 (119)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 999999998844
No 135
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=56.76 E-value=52 Score=31.18 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=53.2
Q ss_pred CcEEEEEEEe-----CCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEecCh
Q 005939 36 SWKKRWFILT-----RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (668)
Q Consensus 36 ~WKKRWFVL~-----~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAeS~ 110 (668)
+=|.|+.+|. .+.+..||.+.... + .+. .-..-.|..-..+........-|.++. +++|+.+|.+.
T Consensus 63 ~KK~R~L~lav~~~~sgrV~lhK~K~N~n--g--sfs-iGkTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~ 133 (171)
T 3hie_A 63 NKKKRLLILSAKPNNAKLIQIHKARENSD--G--SFQ-IGRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSA 133 (171)
T ss_dssp GEEEEEEEEEECTTCTTCEEEEEEEECTT--S--CEE-EEEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSH
T ss_pred CccceEEEEEEecCCCceEEEEEEEECCC--C--cEE-eeeeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCH
Confidence 3588888774 24567777665432 1 111 112234444333333223456688887 79999999999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 005939 111 EDLYEWKTALELALAQA 127 (668)
Q Consensus 111 eE~~eWi~AL~~ai~~a 127 (668)
.|+..++..|-+...+.
T Consensus 134 ~Er~~FI~sL~K~y~ky 150 (171)
T 3hie_A 134 KERTVFIKSLITLYIQT 150 (171)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887644
No 136
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.55 E-value=11 Score=32.56 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005939 620 HERRLALEQDVSRLQEQLQAERDLRAALEV 649 (668)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (668)
+.||.+|.+-|.+|+.++++|.+-|.+|+-
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999874
No 137
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.83 E-value=72 Score=28.51 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=44.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005939 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (668)
|....+|..-|++|+..+.-| ++| =+..|.|-..|..++.-||.-+.-|++.|..|-+....|..
T Consensus 40 e~~~~~l~~Ek~~L~~qL~~E-~~~---l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 40 EEKMVSLLQEKNDLQLQVQAE-QDN---LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777654 222 23557777788888888888888888888887777666643
No 138
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.53 E-value=5.2 Score=29.42 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (668)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (668)
..|.+|+|-..|+||.|..-+.| |..--.-||+|+++|..
T Consensus 6 aqlknrvayklkenaklenivar----lendnanlekdianlek 45 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVAR----LENDNANLEKDIANLEK 45 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HhcccchHHHHHHHHHH
Confidence 35677888888999887643322 33333445555555543
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.15 E-value=15 Score=44.52 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=0.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASL 612 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (668)
...||..-.+||.|+..+.+.|+.||+.+
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ----------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999988888888777653
No 140
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=51.85 E-value=16 Score=35.01 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.1
Q ss_pred CceEEEE-ccCCCCCceEEEEecChHHHHHHHHHHHHHHh
Q 005939 87 KKLLTVL-FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 87 kk~~fvi-t~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
.+.+|.+ .++ ...+.+|.|.+..+...|+++|+..|.
T Consensus 140 e~r~fEv~s~D--G~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 140 EPRYLEICAAD--GQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp SSCEEEEEETT--TTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEcCC--CCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3445554 442 236899999999999999999998874
No 141
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=50.10 E-value=58 Score=33.52 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=53.4
Q ss_pred CCCcEEEEEEEeC-----CeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecCCceEEEEccCCCCCceEEEEec
Q 005939 34 WKSWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE 108 (668)
Q Consensus 34 ~k~WKKRWFVL~~-----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~fvit~~~~~gr~y~fqAe 108 (668)
.+.=|.||.+|.- +.++.||-+.... + .+. ..+..+|..-..+...-....-|+++. +++||.+|.
T Consensus 131 ~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n--g--sFs-IGKTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A~ 201 (320)
T 3a58_A 131 LENKKKRLLILSAKPNNAKLIQIHKARENSD--G--SFQ-IGRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETN 201 (320)
T ss_dssp GGGEEEEEEEEEECSSCTTCEEEEEEEECGG--G--CEE-EEEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEES
T ss_pred ccccCceEEEEEEecCCCceEEEEEEEecCC--C--ceE-ecceechhhhhhhhcccCCCCceEEEe----CCceEEecC
Confidence 3556889988753 3577777655421 1 111 112234444333321113346688887 899999999
Q ss_pred ChHHHHHHHHHHHHHHhh
Q 005939 109 TSEDLYEWKTALELALAQ 126 (668)
Q Consensus 109 S~eE~~eWi~AL~~ai~~ 126 (668)
+..|+.-++..|-+...+
T Consensus 202 s~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 202 SAKERTVFIKSLITLYIQ 219 (320)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999888753
No 142
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.79 E-value=37 Score=29.15 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005939 620 HERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
...+..+|++|+.|--.|=.|.+
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666655544433
No 143
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.32 E-value=24 Score=28.89 Aligned_cols=49 Identities=39% Similarity=0.526 Sum_probs=32.6
Q ss_pred HhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
-|...|+||=.|+.+=.-++.+||-.|+...++ |..+++-+..|.++|+
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~----~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA----KLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 477889999999998889999999988765554 5556666666666654
No 144
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=44.47 E-value=56 Score=32.50 Aligned_cols=50 Identities=30% Similarity=0.425 Sum_probs=37.5
Q ss_pred HHHhhcchhhhhh---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhH-HHHHH
Q 005939 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDVS-RLQEQLQAERDL-RAALE 648 (668)
Q Consensus 599 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 648 (668)
++||+-|+..++. ++++=+|-.|||-+-|..|- +|.|-.-.||+. ..|+|
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999887776 77788888999988887774 676666666665 44554
No 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.04 E-value=40 Score=37.43 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhH
Q 005939 628 QDVSRLQEQLQAERDL 643 (668)
Q Consensus 628 ~~~~~~~~~~~~~~~~ 643 (668)
+++.+|+.+++..++.
T Consensus 544 ~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 544 QENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhH
Confidence 4444444444444433
No 146
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.01 E-value=38 Score=23.39 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 612 LERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
||-.-+.|-.+--.||.+|+||++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55566677778888999999999876
No 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=42.22 E-value=32 Score=36.93 Aligned_cols=41 Identities=29% Similarity=0.347 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
.|++++.+|.+.-..+++.+..|+++|++|..+|.-|-.=+
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888889999999999999999998885544
No 148
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.87 E-value=66 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 613 ERRKQALHERRLALEQDVSRLQEQLQAER 641 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (668)
..|=|++..|..-||.-|..|+.+|+.=|
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445555555556666665555554433
No 149
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=40.31 E-value=57 Score=27.90 Aligned_cols=38 Identities=39% Similarity=0.492 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 005939 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (668)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (668)
++..|=++.+.+.|+|.-.|+ ||+-|-.=|+-|+||++
T Consensus 46 MH~~Ll~~i~~~ee~R~~yE~----LQDkL~qi~eAR~ALda 83 (98)
T 3f1i_H 46 MHPQLLELLNQLDERRLYYEG----LQDKLAQIRDARGALSA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 567788999999999998774 88889899999999975
No 150
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=39.93 E-value=12 Score=25.86 Aligned_cols=15 Identities=40% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHhhcchhhhh
Q 005939 596 HRIAKEARGNAILQA 610 (668)
Q Consensus 596 ~~~~~~~~~~~~~~~ 610 (668)
.||+.|.-+|+.||-
T Consensus 17 ~~IgDEld~N~ELQr 31 (34)
T 3pk1_B 17 KRIGDELDSNMELQR 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHH
Confidence 589999999999995
No 151
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.51 E-value=22 Score=29.80 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 609 QASLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
|.+|+.|-++|++.+.+|+++++.+..+|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888889999999999988887765
No 152
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.41 E-value=85 Score=34.71 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 005939 622 RRLALEQD 629 (668)
Q Consensus 622 ~~~~~~~~ 629 (668)
.+.+||+.
T Consensus 545 ~~~~le~~ 552 (597)
T 3oja_B 545 ENIALEKQ 552 (597)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33344443
No 153
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.29 E-value=67 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 005939 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (668)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (668)
+=|.-|+|||.+=.-||.|.|+=.-+...-|..|-+|=-.|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999987777777777777765444
No 154
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.14 E-value=78 Score=26.22 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhhcchhhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 590 TKNDLRHRIAKEARGNAILQASLER----------RKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
+.-+||+....|++.-..+|-.|.+ +=+..+.|...|+.++.+|++++..
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888887787777777766644 4455567888899999999998865
No 155
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=38.68 E-value=67 Score=27.00 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 005939 614 RRKQALHERRLALEQDV-SRLQEQLQAERDLRAAL 647 (668)
Q Consensus 614 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 647 (668)
++-+|-.|||.++|-.| .+|++....+++.+.--
T Consensus 49 kKLeAAeERRks~EA~~L~~Laekreh~~EV~k~~ 83 (87)
T 4f6r_C 49 KKLEAAEERRKAHFAAMLERLQEKDKHAEEVRKNK 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455677888877655 47888888888776543
No 156
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.44 E-value=83 Score=26.30 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005939 613 ERRKQALHERRLALEQDVSRLQE 635 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~ 635 (668)
|-|...|-.++.-||..+..|++
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 157
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.31 E-value=46 Score=21.72 Aligned_cols=26 Identities=42% Similarity=0.480 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhh
Q 005939 625 ALEQDVSRLQEQLQAERDLRAALEVG 650 (668)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (668)
|||+..+.|.-.||+=...-.|||-|
T Consensus 5 alekkcaalesklqalekklealehg 30 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALEHG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555666666666544444566665
No 158
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.85 E-value=48 Score=29.55 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005939 618 ALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~ 637 (668)
||.+|=+..|++|+.||+++
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~ 27 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKV 27 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444444443
No 159
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.08 E-value=36 Score=21.57 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh
Q 005939 626 LEQDVSRLQEQLQAERDLRAALEVG 650 (668)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (668)
|=++++.|||.|.+ ||.-|.+|
T Consensus 6 lykeledlqerlrk---lrkklrsg 27 (27)
T 3twe_A 6 LYKELEDLQERLRK---LRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHC-
T ss_pred HHHHHHHHHHHHHH---HHHHhcCC
Confidence 45677888888854 55555544
No 160
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=36.75 E-value=1.9e+02 Score=25.76 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=46.6
Q ss_pred cEEEEEEEeCCeEEEEeCCCCCCCCCCccceeeeCcEEcCCCceeeeecC--CceEEEEccC--CCCCceEEEEecChHH
Q 005939 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPD--GRDGRAFTLKAETSED 112 (668)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~fvit~~--~~~gr~y~fqAeS~eE 112 (668)
-.-|-++++|..+.+--...... ...+.....+.++.+..+..... +.|..++ .. ....+.|.|.|.+..|
T Consensus 27 ~~ER~L~IDGdYIHImP~~~~~~----~~~~~KTtS~H~s~Vv~~K~s~k~P~~FKivV-~k~~~~e~KrYdfEA~s~~e 101 (121)
T 3ulb_A 27 KHERTLAIDGDYIYIVPPEGRIH----WHDNVKTKSLHISQVVLVKKSKRVPEHFKIFV-RREGQDDIKRYYFEAVSGQE 101 (121)
T ss_dssp EEEEEEEEETTEEEEECCC-----------CCCCEEEEGGGEEEEEECSSCTTEEEEEE-CCTTCSSCEEEEEEESSHHH
T ss_pred cccEEEEEcCceEEEecCCCCcc----cccCCcEEEEEEeeEEEEEecccCCCcEEEEE-EccCCCCcceeEEEeCCHHH
Confidence 35666778888777663322110 00011222344444333322222 2233333 23 2335899999999999
Q ss_pred HHHHHHHHHHHHh
Q 005939 113 LYEWKTALELALA 125 (668)
Q Consensus 113 ~~eWi~AL~~ai~ 125 (668)
+.+=+..|+..++
T Consensus 102 a~EIV~~ik~~~~ 114 (121)
T 3ulb_A 102 CTEIVTRLQNLLS 114 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999885
No 161
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.98 E-value=1.1e+02 Score=28.48 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
|..++.-.+.++.+|+++|+.||.+|...|.-.
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566678888899999999999998877543
No 162
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=35.71 E-value=44 Score=25.11 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005939 613 ERRKQALHERRLALEQDVSRLQEQLQAERD 642 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (668)
||||.+--+-=..||+.-+-|+|||=.||=
T Consensus 5 errr~e~ld~l~~LEkqF~~LkEqlY~ERl 34 (49)
T 2xus_A 5 ERRRSECVSEMLDLEKQFSELKEKLFRERL 34 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666678999999999999999984
No 163
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.50 E-value=1.2e+02 Score=26.73 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=36.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005939 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 639 (668)
|..+...-.|++.|..+|+.--..+.+.+..=|+.+.+ .|..||..|..|+|.|--
T Consensus 43 ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 43 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566667777766655666666655655544 688899999999887754
No 164
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.46 E-value=89 Score=26.03 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
.+||.+|-.-.-.|+.|+..+..=+. +|..++.....|..+|.++|.-+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~-----------~~edfk~KyE~E~~~R~~~E~d~ 51 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAE-----------DIMRLREKLQEEMLQREEAENTL 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788887666777777766554333 33444444455555555555433
No 165
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=33.66 E-value=71 Score=37.43 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=28.0
Q ss_pred eEEEEccCCCC--CceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 89 ~~fvit~~~~~--gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
.+|.|...... -+.+.|.|.+.++++.|+..|+..+..
T Consensus 97 ~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~ 136 (799)
T 2zkm_X 97 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH 136 (799)
T ss_dssp TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 45555442221 246899999999999999999998863
No 166
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=31.87 E-value=1.4e+02 Score=35.16 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=22.3
Q ss_pred ceEEEEecChHHHHHHHHHHHHHHh
Q 005939 101 RAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
+.+.|.|.+.++.+.|+..|+..+.
T Consensus 118 ~~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 118 EWTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred eEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 4458999999999999999999875
No 167
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.73 E-value=1.3e+02 Score=36.62 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=22.8
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 596 HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (668)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (668)
..+.+..|++..|+...++-++.|++.-..|+++.+.|+.|+
T Consensus 998 ~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555655555666655555543
No 168
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.62 E-value=65 Score=21.30 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 612 LERRKQALHERRLALEQDVSRLQE 635 (668)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~ 635 (668)
|.+|-|||.-|--|-.|.|.-|+-
T Consensus 6 lkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 789999999999999999987763
No 169
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.02 E-value=76 Score=26.20 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005939 617 QALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
|++..|..-||.-|..|+.+|+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 170
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.04 E-value=70 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=25.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhH
Q 005939 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQ---LQAERDL 643 (668)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 643 (668)
.|+.||+.|..-++.+. +|.+++..|..+ |.+|||+
T Consensus 5 s~~al~~eL~~~~~ei~----~L~~ei~eLk~~ve~lEkERDF 43 (106)
T 4e61_A 5 SLVAIQAELTKSQETIG----SLNEEIEQYKGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887666555 577777777655 6788884
No 171
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.34 E-value=75 Score=28.90 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
....-++.++.+|+++|+.||.+|...|.-.
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566777777777777777777776543
No 172
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.04 E-value=2.5e+02 Score=27.70 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhHHHHHHHH------HHhhcchhhhh
Q 005939 581 ELAIQRLEITKNDLRHRIA------KEARGNAILQA 610 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 610 (668)
+..|.++|..-.+++.||. ..|+.|.-++|
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~a 94 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRS 94 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 3455566666666666663 24555554443
No 173
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.11 E-value=2.2e+02 Score=26.97 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhhHHH----HHHHHHHhhcc-hhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 005939 580 EELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQA-------LHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 580 ~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 638 (668)
.-..+++|-.+=+.| +.++....-.+ +.||.+|.||++. |.+-..+||++...|+.++.
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~ 80 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQID 80 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566665554443 44555555544 5799999999988 45555667777777766644
No 174
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=26.94 E-value=2.2e+02 Score=23.85 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhh
Q 005939 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (668)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (668)
+.|-.+-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556779999999999999999987
No 175
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.97 E-value=1.1e+02 Score=30.15 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 005939 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (668)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (668)
.+.+.+.|.+++..|++..++||.+++.=..+...++.+..+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~ 118 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEY 118 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456778888888889999988888887777777777776654
No 176
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.66 E-value=3.2e+02 Score=24.18 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=6.4
Q ss_pred HhHHHHHHhhh
Q 005939 641 RDLRAALEVGL 651 (668)
Q Consensus 641 ~~~~~~~~~~~ 651 (668)
-|.+.+|+.-+
T Consensus 111 l~vKl~Ld~EI 121 (131)
T 3tnu_A 111 LDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35566776544
No 177
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.05 E-value=1.5e+02 Score=28.35 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005939 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (668)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (668)
+.+-++|.++=.+|++++..+++++.+++..-
T Consensus 40 ~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 34456777777889999999999998887543
No 178
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.00 E-value=1.2e+02 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHH
Q 005939 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (668)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (668)
=|.-|+|||.+=.-||.|.|+=.-+...-|..|-+|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqR 40 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQR 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999997665655566555544
No 179
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.85 E-value=1.2e+02 Score=20.09 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 005939 623 RLALEQDVSRLQ 634 (668)
Q Consensus 623 ~~~~~~~~~~~~ 634 (668)
--.|||+|+.|.
T Consensus 17 nyqleqevaqle 28 (33)
T 1fmh_A 17 NYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 346889888764
No 180
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.74 E-value=1e+02 Score=33.17 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 005939 591 KNDLRHRIAKEARGNAILQASLERRKQALH 620 (668)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (668)
-.+|+.++.+--+.+..+|+.+++.++.|+
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333444444444444444443
No 181
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.38 E-value=1.6e+02 Score=26.45 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (668)
..++.+++.|.+++..|++.+++|+..++.=...-...+.++
T Consensus 77 ~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 77 HTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888887776555555555554
No 182
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.15 E-value=2.6e+02 Score=24.74 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
+.+...||..+.+-|..|..=-.....|+|-|+..++ .+..|+. |.++|+.++.
T Consensus 25 e~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~---~~q~a~~-e~e~Lr~e~~ 78 (120)
T 3i00_A 25 SGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQH---LRQQAAD-DCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHH
Confidence 3344556667777777776655667778888877662 3333333 3445555444
No 183
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.83 E-value=45 Score=34.55 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=24.1
Q ss_pred CCchHHHHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 005939 576 SSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA 625 (668)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (668)
+...++...++|+..=+..+..|..-...|+.|+..+++-++..+.++.+
T Consensus 165 ~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 165 FDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp CHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445555555655433334444444455555555555544444444443
No 184
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=22.76 E-value=3.4e+02 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=27.9
Q ss_pred eEEEEccCCCCCceEEEEecChHHHHHHHHHHHHHHhh
Q 005939 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (668)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAeS~eE~~eWi~AL~~ai~~ 126 (668)
..|-+..+ .+..+-|.|.|..+...|+..|+-.+.+
T Consensus 116 laFSii~~--~~~~L~fvA~s~~~~~~W~DGL~~Llg~ 151 (203)
T 3a98_B 116 LAFSILYD--SNCQLNFIAPDKHEYCIWTDGLNALLGK 151 (203)
T ss_dssp GEEEEEET--TTEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEecC--CCceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 35555432 2478999999999999999999987753
No 185
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.68 E-value=3.4e+02 Score=22.39 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHH
Q 005939 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAA 646 (668)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 646 (668)
.-|+.+=-|=.-||-.|.+-=-.|+.| ..-.+.+...|-+|+++..+|+++.+. ...+|+-
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L----~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSL----SQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555665444455544 445567888999999999999876653 3334443
No 186
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.47 E-value=98 Score=27.38 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQ 638 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (668)
.-|+||.+.|.++...|+++++++++|+.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888877765
No 187
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.28 E-value=1e+02 Score=32.72 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCccCCCCCCcchhhhhHHHHhhhCCCCCCC-hhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHH
Q 005939 209 EEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVP-ASCCTALLEAYKIDRKEARISAMRSAILETFPEPNR 287 (668)
Q Consensus 209 ~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp-~~l~~~~i~~~~~~~~~~ri~~l~~lI~~~LP~~n~ 287 (668)
..|..|++.++.... ...++|.+...++.+||.--.-.-. ...|.++. .+.+.++..|+.-|..+|| |.
T Consensus 67 ~rIe~L~~~L~~~s~---s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s-----~eLe~~i~~lk~~V~~q~~--~i 136 (390)
T 1deq_A 67 SRINKLRDSLFNYQK---NSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN-----EDLRSRIEILRRKVIEQVQ--RI 136 (390)
T ss_pred HHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-----HHHHHHHHHHHHHHHHHhH--HH
Confidence 345555555553211 1235666666666666642111100 11122221 1247789999998988898 88
Q ss_pred HHHHHHHHHHHHhhcccccCCCCccchhhhhcccccCC
Q 005939 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (668)
Q Consensus 288 ~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfgP~Llr~ 325 (668)
.+|+..|..++.-.+.-+ ..+-+|++||--..
T Consensus 137 r~Lq~~l~~q~~kiqRLE------~~Id~c~~~C~~sC 168 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLE------VDIDIKIRSCKGSC 168 (390)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHhccccccc
Confidence 899988887755544322 12388999987643
No 188
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=20.97 E-value=1.7e+02 Score=34.66 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.7
Q ss_pred ceEEEEecChHHHHHHHHHHHHHHh
Q 005939 101 RAFTLKAETSEDLYEWKTALELALA 125 (668)
Q Consensus 101 r~y~fqAeS~eE~~eWi~AL~~ai~ 125 (668)
..+.|.|.+.++.+.|+..|+..+.
T Consensus 115 ~~LdLVA~s~e~a~~W~~gL~~L~~ 139 (885)
T 3ohm_B 115 VFLNFMAVQDDTAKVWSEELFKLAM 139 (885)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCChHHHHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 189
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.57 E-value=2.4e+02 Score=20.34 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005939 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (668)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (668)
..||.|-+.|+.|---||.-|+-||-.=|-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 468889999999999999999988866553
Done!