Query 005942
Match_columns 668
No_of_seqs 251 out of 729
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5259 RSC8 RSC chromatin rem 100.0 4.2E-92 9.1E-97 748.9 28.7 404 72-554 48-473 (531)
2 KOG1279 Chromatin remodeling f 100.0 5.9E-87 1.3E-91 733.7 28.1 475 30-558 2-506 (506)
3 PF04433 SWIRM: SWIRM domain; 99.9 5.2E-27 1.1E-31 204.6 5.8 86 76-165 1-86 (86)
4 KOG0457 Histone acetyltransfer 99.9 7.1E-24 1.5E-28 227.2 9.1 110 239-350 13-125 (438)
5 COG5114 Histone acetyltransfer 99.8 1.1E-20 2.3E-25 195.2 5.9 109 239-349 4-115 (432)
6 cd02336 ZZ_RSC8 Zinc finger, Z 99.1 9.6E-11 2.1E-15 91.0 3.7 45 241-285 1-45 (45)
7 PF00249 Myb_DNA-binding: Myb- 99.0 4.7E-10 1E-14 87.6 5.6 44 299-342 2-47 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 98.8 1.2E-08 2.7E-13 82.8 5.7 41 301-341 1-41 (60)
9 smart00717 SANT SANT SWI3, AD 98.7 2.3E-08 5E-13 75.8 6.0 44 299-342 2-46 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 5.7E-08 1.2E-12 72.7 5.8 43 300-342 1-44 (45)
11 PLN03000 amine oxidase 98.6 4.9E-08 1.1E-12 115.9 6.8 85 80-169 86-172 (881)
12 PLN02328 lysine-specific histo 98.5 1.5E-07 3.4E-12 111.4 6.7 88 81-172 138-226 (808)
13 cd02335 ZZ_ADA2 Zinc finger, Z 98.4 2.4E-07 5.2E-12 73.2 4.3 47 241-287 1-49 (49)
14 cd02345 ZZ_dah Zinc finger, ZZ 98.2 1.6E-06 3.5E-11 68.7 3.6 45 242-286 2-48 (49)
15 PLN03212 Transcription repress 98.1 3.4E-06 7.3E-11 86.8 5.3 46 297-342 24-71 (249)
16 cd02338 ZZ_PCMF_like Zinc fing 98.1 3.3E-06 7.2E-11 66.8 3.9 45 242-286 2-48 (49)
17 TIGR01557 myb_SHAQKYF myb-like 98.1 6.3E-06 1.4E-10 67.4 5.4 47 298-344 3-55 (57)
18 cd02343 ZZ_EF Zinc finger, ZZ 98.1 3.6E-06 7.8E-11 66.4 3.6 40 242-281 2-41 (48)
19 cd02334 ZZ_dystrophin Zinc fin 98.1 3.8E-06 8.3E-11 66.6 3.7 44 242-285 2-47 (49)
20 smart00291 ZnF_ZZ Zinc-binding 98.0 4.6E-06 9.9E-11 64.5 3.6 40 240-279 4-43 (44)
21 cd02249 ZZ Zinc finger, ZZ typ 98.0 5.4E-06 1.2E-10 64.6 3.9 45 241-287 1-46 (46)
22 cd02340 ZZ_NBR1_like Zinc fing 98.0 6.2E-06 1.4E-10 63.6 3.7 42 242-287 2-43 (43)
23 PLN02529 lysine-specific histo 98.0 6.6E-06 1.4E-10 97.2 5.5 86 81-171 63-150 (738)
24 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.9 1.2E-05 2.7E-10 63.5 3.8 44 241-287 1-48 (48)
25 PLN03091 hypothetical protein; 97.9 1.5E-05 3.3E-10 87.6 5.4 45 298-342 14-60 (459)
26 PF00569 ZZ: Zinc finger, ZZ t 97.7 1E-05 2.2E-10 63.2 1.1 41 240-280 4-45 (46)
27 KOG0048 Transcription factor, 97.7 3.2E-05 6.9E-10 79.9 4.5 45 298-342 9-55 (238)
28 PLN03212 Transcription repress 97.6 5.9E-05 1.3E-09 77.8 5.3 47 296-342 76-122 (249)
29 cd02344 ZZ_HERC2 Zinc finger, 97.6 7.1E-05 1.5E-09 58.4 3.6 42 242-287 2-45 (45)
30 PLN03091 hypothetical protein; 97.3 0.00028 6.1E-09 77.9 6.0 47 296-342 65-111 (459)
31 cd02339 ZZ_Mind_bomb Zinc fing 97.3 0.00025 5.3E-09 55.4 3.7 41 242-286 2-44 (45)
32 KOG0048 Transcription factor, 96.9 0.0016 3.6E-08 67.3 5.8 43 297-339 61-103 (238)
33 cd02337 ZZ_CBP Zinc finger, ZZ 96.6 0.0016 3.5E-08 49.9 2.8 33 241-274 1-33 (41)
34 KOG0049 Transcription factor, 96.3 0.0043 9.3E-08 71.1 5.2 47 296-342 358-405 (939)
35 cd02342 ZZ_UBA_plant Zinc fing 96.3 0.0028 6.1E-08 49.0 2.2 31 242-272 2-33 (43)
36 PLN02976 amine oxidase 95.9 0.012 2.5E-07 74.0 6.4 86 82-170 452-542 (1713)
37 KOG0049 Transcription factor, 95.6 0.011 2.4E-07 67.8 4.1 46 297-342 411-460 (939)
38 KOG4582 Uncharacterized conser 95.3 0.011 2.4E-07 62.8 2.8 45 241-288 153-198 (278)
39 PF13837 Myb_DNA-bind_4: Myb/S 95.2 0.012 2.7E-07 50.9 2.4 44 299-342 2-63 (90)
40 KOG4286 Dystrophin-like protei 94.4 0.018 3.9E-07 67.1 1.8 43 240-282 603-646 (966)
41 KOG1280 Uncharacterized conser 93.5 0.041 9E-07 59.4 2.3 41 240-280 8-49 (381)
42 KOG0051 RNA polymerase I termi 93.4 0.089 1.9E-06 60.9 4.8 45 297-342 383-427 (607)
43 KOG0051 RNA polymerase I termi 90.8 0.22 4.7E-06 57.9 3.9 51 297-347 435-511 (607)
44 KOG4167 Predicted DNA-binding 90.1 0.44 9.4E-06 56.1 5.4 45 297-341 618-662 (907)
45 KOG0050 mRNA splicing protein 89.9 0.29 6.3E-06 55.5 3.8 44 298-341 7-51 (617)
46 KOG4301 Beta-dystrobrevin [Cyt 89.2 0.17 3.8E-06 54.7 1.3 41 240-280 240-281 (434)
47 COG5118 BDP1 Transcription ini 88.4 0.86 1.9E-05 50.1 5.9 45 297-341 364-408 (507)
48 PF13873 Myb_DNA-bind_5: Myb/S 88.4 0.91 2E-05 38.6 5.0 44 299-342 3-68 (78)
49 KOG1924 RhoA GTPase effector D 88.0 14 0.00029 44.7 15.4 38 302-339 250-289 (1102)
50 KOG0050 mRNA splicing protein 86.1 0.65 1.4E-05 52.8 3.5 45 297-342 58-102 (617)
51 KOG1924 RhoA GTPase effector D 85.4 3.8 8.2E-05 49.0 9.2 27 69-95 52-78 (1102)
52 TIGR02894 DNA_bind_RsfA transc 85.3 0.72 1.6E-05 45.4 3.0 44 298-342 4-54 (161)
53 KOG4282 Transcription factor G 84.9 1.1 2.4E-05 48.7 4.6 46 299-344 55-114 (345)
54 PRK00409 recombination and DNA 82.9 8.1 0.00018 47.0 11.1 77 475-552 489-566 (782)
55 TIGR01069 mutS2 MutS2 family p 82.6 8.9 0.00019 46.6 11.3 78 475-553 484-562 (771)
56 COG5147 REB1 Myb superfamily p 81.5 0.87 1.9E-05 52.3 2.2 42 298-339 20-62 (512)
57 KOG4468 Polycomb-group transcr 79.1 1.8 3.8E-05 50.2 3.6 45 298-342 88-142 (782)
58 COG5147 REB1 Myb superfamily p 78.3 2 4.3E-05 49.5 3.7 46 297-342 71-116 (512)
59 COG5180 PBP1 Protein interacti 74.2 4.2 9.1E-05 46.1 4.7 18 585-602 526-543 (654)
60 KOG4329 DNA-binding protein [G 74.1 4.2 9.2E-05 44.8 4.6 48 298-345 277-325 (445)
61 PLN03119 putative ADP-ribosyla 72.8 4.6 9.9E-05 46.9 4.7 96 241-352 24-125 (648)
62 PF09111 SLIDE: SLIDE; InterP 70.7 5.6 0.00012 37.4 4.0 45 297-341 48-108 (118)
63 PF03276 Gag_spuma: Spumavirus 69.0 80 0.0017 36.9 13.3 9 656-664 268-276 (582)
64 PF00392 GntR: Bacterial regul 68.1 8.4 0.00018 31.5 4.2 53 111-165 3-56 (64)
65 PLN03131 hypothetical protein; 65.4 8.3 0.00018 45.3 4.8 94 241-351 24-124 (705)
66 PF07649 C1_3: C1-like domain; 65.1 4.2 9E-05 28.8 1.5 27 242-269 2-29 (30)
67 PF15324 TALPID3: Hedgehog sig 64.2 97 0.0021 38.9 13.3 91 473-564 61-169 (1252)
68 PF04504 DUF573: Protein of un 61.2 11 0.00024 34.2 3.9 45 298-342 4-61 (98)
69 smart00307 ILWEQ I/LWEQ domain 60.7 50 0.0011 33.9 8.9 38 509-547 160-197 (200)
70 PF12776 Myb_DNA-bind_3: Myb/S 60.6 9.4 0.0002 33.3 3.3 43 300-342 1-61 (96)
71 KOG1279 Chromatin remodeling f 58.4 12 0.00025 43.4 4.4 95 77-171 185-286 (506)
72 PLN03142 Probable chromatin-re 58.0 14 0.00031 46.3 5.3 40 299-338 825-865 (1033)
73 KOG2236 Uncharacterized conser 56.1 44 0.00095 38.2 8.2 23 606-628 430-455 (483)
74 PF15219 TEX12: Testis-express 54.0 1.1E+02 0.0023 28.0 8.6 58 500-558 38-98 (100)
75 PF07271 Cytadhesin_P30: Cytad 53.8 70 0.0015 34.3 8.8 16 538-553 156-171 (279)
76 KOG3915 Transcription regulato 50.9 78 0.0017 36.3 9.0 37 514-550 527-569 (641)
77 KOG3647 Predicted coiled-coil 49.8 90 0.0019 33.6 8.8 62 484-547 92-157 (338)
78 KOG3859 Septins (P-loop GTPase 49.7 1.1E+02 0.0024 33.5 9.5 48 512-559 354-402 (406)
79 PF04111 APG6: Autophagy prote 49.3 2.2E+02 0.0049 31.0 12.2 48 509-556 74-121 (314)
80 PF03107 C1_2: C1 domain; Int 48.9 15 0.00033 26.1 2.2 27 242-269 2-29 (30)
81 KOG1194 Predicted DNA-binding 48.8 9.3 0.0002 43.3 1.6 43 298-341 470-512 (534)
82 PRK13729 conjugal transfer pil 48.7 1.6E+02 0.0035 34.1 11.2 40 480-523 66-107 (475)
83 KOG1194 Predicted DNA-binding 48.1 29 0.00063 39.5 5.2 46 297-342 186-231 (534)
84 KOG4849 mRNA cleavage factor I 47.9 90 0.002 34.7 8.7 16 300-317 90-105 (498)
85 PRK13923 putative spore coat p 47.7 18 0.00038 36.3 3.2 41 298-339 5-52 (170)
86 PF01608 I_LWEQ: I/LWEQ domain 47.7 1.5E+02 0.0033 29.3 9.5 21 527-547 129-149 (152)
87 KOG0703 Predicted GTPase-activ 47.0 22 0.00047 38.4 3.9 98 241-351 26-126 (287)
88 PF09862 DUF2089: Protein of u 46.9 35 0.00077 32.0 4.8 60 243-328 1-60 (113)
89 PF00643 zf-B_box: B-box zinc 46.6 20 0.00043 26.8 2.7 38 241-286 4-41 (42)
90 KOG3554 Histone deacetylase co 46.3 22 0.00047 40.6 3.9 51 299-349 286-337 (693)
91 cd04779 HTH_MerR-like_sg4 Heli 45.9 1.3E+02 0.0029 28.7 8.7 52 502-556 78-129 (134)
92 PF13404 HTH_AsnC-type: AsnC-t 45.9 51 0.0011 25.3 4.8 38 304-342 3-41 (42)
93 smart00595 MADF subfamily of S 45.3 18 0.0004 31.1 2.6 23 319-342 29-51 (89)
94 PF02954 HTH_8: Bacterial regu 44.7 32 0.00069 26.1 3.5 26 304-329 5-30 (42)
95 KOG0706 Predicted GTPase-activ 43.4 19 0.00042 40.7 3.0 60 234-309 17-79 (454)
96 PF05928 Zea_mays_MuDR: Zea ma 42.5 2.7E+02 0.0059 27.9 10.3 71 476-546 12-89 (207)
97 smart00345 HTH_GNTR helix_turn 42.0 29 0.00063 26.9 3.1 50 114-165 2-52 (60)
98 PF01022 HTH_5: Bacterial regu 41.3 63 0.0014 24.8 4.8 45 117-165 3-47 (47)
99 PLN03142 Probable chromatin-re 41.3 42 0.0009 42.3 5.7 46 297-342 925-983 (1033)
100 COG3074 Uncharacterized protei 41.1 1.2E+02 0.0026 26.3 6.6 59 497-555 7-73 (79)
101 TIGR01069 mutS2 MutS2 family p 40.0 3.1E+02 0.0068 33.7 12.7 19 414-432 415-433 (771)
102 PRK06474 hypothetical protein; 38.3 50 0.0011 33.0 4.8 48 117-165 12-59 (178)
103 PF15346 ARGLU: Arginine and g 38.0 4.1E+02 0.0089 26.3 13.2 50 509-558 62-111 (149)
104 PF12674 Zn_ribbon_2: Putative 37.7 18 0.00039 31.9 1.3 35 242-276 2-39 (81)
105 PHA00442 host recBCD nuclease 37.1 36 0.00077 28.0 2.8 26 302-327 24-50 (59)
106 PF02207 zf-UBR: Putative zinc 36.9 21 0.00046 30.2 1.6 35 252-290 11-48 (71)
107 PF01412 ArfGap: Putative GTPa 36.0 21 0.00045 33.1 1.5 62 238-312 11-72 (116)
108 PF10820 DUF2543: Protein of u 35.6 28 0.00061 30.1 2.1 56 88-161 22-79 (81)
109 COG5347 GTPase-activating prot 35.5 43 0.00092 36.8 4.1 99 239-350 19-124 (319)
110 smart00105 ArfGap Putative GTP 35.4 41 0.00088 31.0 3.4 92 241-349 4-105 (112)
111 PRK00846 hypothetical protein; 35.3 3.1E+02 0.0068 24.1 8.8 54 506-560 6-59 (77)
112 PRK06800 fliH flagellar assemb 35.0 1E+02 0.0022 31.5 6.2 26 529-554 86-111 (228)
113 PF14569 zf-UDP: Zinc-binding 34.7 22 0.00048 31.3 1.4 51 238-289 7-66 (80)
114 PF06034 DUF919: Nucleopolyhed 34.5 1.1E+02 0.0024 25.9 5.4 44 511-555 13-56 (62)
115 KOG0384 Chromodomain-helicase 34.3 27 0.00058 44.2 2.5 28 297-324 1132-1160(1373)
116 PLN02436 cellulose synthase A 33.9 53 0.0012 41.3 4.9 50 238-288 34-92 (1094)
117 COG1725 Predicted transcriptio 33.7 75 0.0016 30.4 4.9 55 112-166 11-68 (125)
118 PF09339 HTH_IclR: IclR helix- 33.7 58 0.0013 25.5 3.6 44 120-165 7-50 (52)
119 PF12802 MarR_2: MarR family; 32.6 87 0.0019 24.7 4.5 43 126-169 15-57 (62)
120 COG3883 Uncharacterized protei 32.2 2.3E+02 0.005 30.4 8.7 58 500-559 51-108 (265)
121 PRK00409 recombination and DNA 32.2 4.7E+02 0.01 32.3 12.5 20 414-433 420-439 (782)
122 PF06689 zf-C4_ClpX: ClpX C4-t 32.2 20 0.00042 27.5 0.6 30 241-271 2-32 (41)
123 KOG2072 Translation initiation 31.6 6.3E+02 0.014 31.5 12.9 63 493-556 609-691 (988)
124 PF07956 DUF1690: Protein of U 31.3 1.2E+02 0.0025 29.5 5.9 56 492-547 61-117 (142)
125 PF12958 DUF3847: Protein of u 31.3 2.6E+02 0.0056 25.2 7.5 49 511-559 6-58 (86)
126 PRK06800 fliH flagellar assemb 30.7 2.8E+02 0.0061 28.4 8.5 20 534-553 59-78 (228)
127 KOG4661 Hsp27-ERE-TATA-binding 30.5 2.1E+02 0.0046 33.9 8.5 56 497-558 620-675 (940)
128 PRK00106 hypothetical protein; 29.7 6.6E+02 0.014 29.7 12.6 12 403-414 5-16 (535)
129 KOG2236 Uncharacterized conser 29.1 1.3E+02 0.0028 34.7 6.5 7 614-620 458-464 (483)
130 cd00090 HTH_ARSR Arsenical Res 29.0 1E+02 0.0022 24.2 4.4 43 120-166 11-53 (78)
131 PLN02189 cellulose synthase 28.7 72 0.0016 40.1 4.8 51 238-289 32-91 (1040)
132 PLN02400 cellulose synthase 28.6 76 0.0016 40.1 5.0 51 238-289 34-93 (1085)
133 PRK11414 colanic acid/biofilm 28.6 78 0.0017 31.9 4.5 65 99-165 2-66 (221)
134 PF08112 ATP-synt_E_2: ATP syn 28.5 2.4E+02 0.0052 23.2 6.1 23 526-548 33-55 (56)
135 PRK13729 conjugal transfer pil 27.4 3.6E+02 0.0078 31.4 9.7 8 512-519 82-89 (475)
136 PF11068 YlqD: YlqD protein; 27.2 5.7E+02 0.012 24.6 11.4 51 500-555 33-88 (131)
137 PF10186 Atg14: UV radiation r 26.9 6.1E+02 0.013 26.3 11.0 35 506-540 74-108 (302)
138 TIGR02449 conserved hypothetic 26.3 2.7E+02 0.0059 23.8 6.5 16 544-559 44-59 (65)
139 PF01475 FUR: Ferric uptake re 25.8 94 0.002 28.4 4.1 50 115-165 7-60 (120)
140 PLN02806 complex I subunit 25.6 1.2E+02 0.0026 26.8 4.3 25 513-539 47-71 (81)
141 TIGR01554 major_cap_HK97 phage 25.5 3.7E+02 0.008 29.6 9.4 55 485-541 8-62 (378)
142 TIGR00270 conserved hypothetic 25.4 2.7E+02 0.0058 27.4 7.3 38 242-279 2-40 (154)
143 PF10186 Atg14: UV radiation r 25.4 7.7E+02 0.017 25.5 13.3 34 523-556 119-152 (302)
144 PRK11179 DNA-binding transcrip 25.3 1.1E+02 0.0024 29.4 4.6 39 303-342 8-47 (153)
145 PTZ00009 heat shock 70 kDa pro 25.2 1.2E+03 0.026 27.9 14.2 15 312-326 322-336 (653)
146 COG3418 Flagellar biosynthesis 25.2 3.3E+02 0.0072 26.7 7.6 25 517-541 8-32 (146)
147 PF14471 DUF4428: Domain of un 25.1 40 0.00086 27.2 1.3 30 242-273 1-30 (51)
148 COG2916 Hns DNA-binding protei 24.8 4.7E+02 0.01 25.2 8.5 50 502-555 4-53 (128)
149 PLN02638 cellulose synthase A 24.7 89 0.0019 39.5 4.7 51 238-289 15-74 (1079)
150 PF14235 DUF4337: Domain of un 24.7 4.4E+02 0.0096 26.0 8.7 57 499-555 49-108 (157)
151 PRK15422 septal ring assembly 24.4 3.1E+02 0.0067 24.3 6.6 30 496-525 6-35 (79)
152 PF07795 DUF1635: Protein of u 23.9 7.9E+02 0.017 25.7 10.6 46 512-557 25-70 (214)
153 PF08914 Myb_DNA-bind_2: Rap1 23.9 1.2E+02 0.0027 25.6 4.0 43 299-341 3-55 (65)
154 PRK14161 heat shock protein Gr 23.5 4.7E+02 0.01 26.4 8.7 18 523-540 47-64 (178)
155 PRK00295 hypothetical protein; 23.1 4.1E+02 0.009 22.5 7.1 45 511-560 3-51 (68)
156 TIGR02812 fadR_gamma fatty aci 23.0 90 0.002 31.7 3.7 57 108-166 6-63 (235)
157 KOG2856 Adaptor protein PACSIN 22.3 8.7E+02 0.019 27.6 11.0 39 520-559 210-248 (472)
158 PF04102 SlyX: SlyX; InterPro 22.2 3.7E+02 0.008 22.7 6.7 47 511-560 2-50 (69)
159 PRK04325 hypothetical protein; 22.0 5.2E+02 0.011 22.3 8.3 45 511-560 7-55 (74)
160 COG5114 Histone acetyltransfer 21.5 99 0.0021 34.0 3.7 69 88-164 361-429 (432)
161 PLN02915 cellulose synthase A 21.1 1.1E+02 0.0025 38.4 4.6 50 239-289 14-72 (1044)
162 PTZ00007 (NAP-L) nucleosome as 21.0 2.7E+02 0.0058 31.0 7.0 32 525-556 53-88 (337)
163 PF02841 GBP_C: Guanylate-bind 21.0 1E+03 0.022 25.4 11.6 40 513-552 229-272 (297)
164 PRK12705 hypothetical protein; 21.0 1E+03 0.023 27.9 12.1 23 518-540 93-115 (508)
165 PRK10421 DNA-binding transcrip 20.4 1.1E+02 0.0024 31.5 3.8 56 109-166 3-59 (253)
No 1
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=100.00 E-value=4.2e-92 Score=748.90 Aligned_cols=404 Identities=32% Similarity=0.551 Sum_probs=332.8
Q ss_pred CCcceeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHH
Q 005942 72 GSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLT 151 (668)
Q Consensus 72 ~~~~ivIPs~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~ 151 (668)
|+|+|+||+|+.|||+.+||+||+++.||||+|++++|||++|++||||||+.||+||.+|||||+|||||+| |||+|.
T Consensus 48 Q~~piiiPs~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLtvTa~RRNvag-DV~aiv 126 (531)
T COG5259 48 QTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACRRNVAG-DVAAIV 126 (531)
T ss_pred cCCceeccchhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEEeeeehhccch-hHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999 599999
Q ss_pred HHHHhhhhhcccccccCCCCCCCCCCCCccccCCCCccccCCcccccccccccccCCCcCCCcc-------------ccc
Q 005942 152 RIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPSDALKSIDSLIKFDKPKCSLKVA-------------DVY 218 (668)
Q Consensus 152 RVH~FLE~WGLINYqvdp~~~p~~~~~~~i~~~~~G~~~~~~~~l~~~~~l~~fd~~~~~~~~~-------------~i~ 218 (668)
|||+|||+||||||||||.++| +.|+++.+||++..+++ ++++.+|..+....+.. +.+
T Consensus 127 rvHrFLekWGLINYqvdp~trP-----s~IgPplt~h~q~l~dt---P~gl~p~l~~~~~~~~~~~a~~~e~~~~k~~~~ 198 (531)
T COG5259 127 RVHRFLEKWGLINYQVDPGTRP-----STIGPPLTSHFQDLHDT---PRGLSPFLPWGPINQRVLGAKEIEYETHKEENY 198 (531)
T ss_pred HHHHHHHHhcceeeccCCCCCc-----cccCCCcchhhHHHhhC---ccccccccCCCCccccccccchhhhhhhccCCC
Confidence 9999999999999999999998 45778889999988765 57888887665432211 222
Q ss_pred CCCC------CCCCccCchhHHHhhccCCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCC
Q 005942 219 SSSC------GGADFFDLDNTIRERLSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPARE 292 (668)
Q Consensus 219 s~~~------~~~d~~~l~~~~~~~~~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~ 292 (668)
++.. ..+++.++..... .....|..||+.+...+|+.++..++.+|..||..|+|+.+..+.||..++....
T Consensus 199 sps~~~~~k~s~~k~~el~~~~~--~~~~~C~~cG~~~~~t~y~nlra~~~n~C~~C~~qg~f~s~~~ssDf~~v~~~~~ 276 (531)
T COG5259 199 SPSLKSPKKESQGKVDELKDHSE--KHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDFKPVTISLL 276 (531)
T ss_pred CchhhhhhhhcCCCccccccccc--cCCceeeccCccccchhhhhhhhhhcccchHHHhcCcCCCccccccchhhhhhcc
Confidence 2210 0111222211110 1237899999999999999998889999999999999999999999999987542
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhCCCCCCCccCCCCCCCCCCCCCCCCCCCCCc
Q 005942 293 YGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGL 372 (668)
Q Consensus 293 ~~~~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~fL~~~~~~~~s~~~~~~~~~d~~~~ 372 (668)
..+..||.+|+++|||||++||++|++||.||||||++|||+|||+|||+|.||.+... .
T Consensus 277 ---~~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~~----------------~- 336 (531)
T COG5259 277 ---IRDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGDG----------------K- 336 (531)
T ss_pred ---cccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhcccC----------------c-
Confidence 25679999999999999999999999999999999999999999999999999976421 0
Q ss_pred ccCCCCCCCCCCcccccccCCccCCCCCCchHHHHHHHHhhcChHHHHHHHHHHHHHHHhhcccCCCCCCCCcccccccc
Q 005942 373 HSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHASLAALSKQMEGAGHGNRMNSENVHNRE 452 (668)
Q Consensus 373 ~~dsng~~~g~~~~~~~~~~~~PFs~a~NPVMS~VAFLas~V~P~VAaAAA~aAl~~l~~~~~~~~~d~~~~se~~~~~~ 452 (668)
|.. ..+.+||+.++||||++++||+++|.|+|+...+.+.++ ..+. .
T Consensus 337 ---------~~~-----~~G~~~f~~seNPVlstis~L~~iV~p~v~s~~q~~~~k-~g~~-----~------------- 383 (531)
T COG5259 337 ---------GDN-----SKGRLPFDGSENPVLSTISFLAGIVNPRVQSEKQRAIIK-SGKI-----S------------- 383 (531)
T ss_pred ---------CCC-----CCCccccccCCCchhhHHHHHHHhcCHHHHHHHhhhhhh-ccce-----e-------------
Confidence 000 123479999999999999999999999998777766522 0000 0
Q ss_pred ccCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005942 453 EENSGVHGPWGQNGAEAALLSAEKVKAAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLL 532 (668)
Q Consensus 453 ~~~d~~~~~~~~n~~~~~~~s~~~vk~Aa~~aL~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~l 532 (668)
.. ..-+.+-+...+..||.+++.|||++|+.|||+|++|+..+|+.||+||++||.+|++||+.+
T Consensus 384 ----------~~-----n~e~~~~~~~~~~~al~s~~eka~l~~~~Eerkm~rL~~~~iq~qleKlk~Kl~~~k~L~~~~ 448 (531)
T COG5259 384 ----------HI-----NRESQEHIEEVIEYALDSGKEKAKLQATNEERKMERLRNVLIQAQLEKLKMKLGHLKELEKST 448 (531)
T ss_pred ----------cC-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011234566777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Q 005942 533 MRECEQVEK---ARQRFATERTRIV 554 (668)
Q Consensus 533 e~Er~~LE~---~Rq~L~~eR~~~~ 554 (668)
.+||.+|+. .|+-.+.+.+-.+
T Consensus 449 ~L~rqeLd~nlll~rl~~~e~l~~~ 473 (531)
T COG5259 449 SLERQELDANLLLRRLNAEEKLFAI 473 (531)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999 4444444444333
No 2
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-87 Score=733.74 Aligned_cols=475 Identities=34% Similarity=0.517 Sum_probs=364.8
Q ss_pred cceeeecccCCCc-ccCCCCCCCCcccccCCccccccccccccCCcceeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCC
Q 005942 30 GQLQALSVVPADS-AALDPERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPD 108 (668)
Q Consensus 30 g~~~~~s~~~~d~-~~~~~~~~~~~~v~~~p~~~~~~~~~k~~~~~~ivIPs~S~WF~~~~Ih~iEk~~lPefF~g~~~~ 108 (668)
++.|.+.....+. ++...++....+++ |.+++..+...++|+|.|+||||++||||++||+||++++||||+|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~~~~~~~~q~~~i~iPs~a~WFd~~~ih~iE~rs~pEFF~gks~s 79 (506)
T KOG1279|consen 2 DSEFALMEGAEAEDLDESKDESQETLGG--PAAHDAAKTVVSEQTHFIIIPSYAAWFDKSDIHDIERRSLPEFFNGKSKS 79 (506)
T ss_pred cccccCCCCCcccccccccCcCcccccc--cchhhhcccccccccceeecccHHhhcChhhhhhHHhccchhhhcCCCCC
Confidence 3455555555554 33333445566676 55666666777999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccccCCCCCCCCCCCCccccCCCCc
Q 005942 109 HTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGE 188 (668)
Q Consensus 109 ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYqvdp~~~p~~~~~~~i~~~~~G~ 188 (668)
|||++|++||||||++||+||.+|||+|+|||+|.| |||+|+|||+|||+|||||||+|++.+|. .+.+..++|
T Consensus 80 ktPe~Y~~yRnfii~tyrlnp~~ylt~ta~rrnl~g-Dv~ai~Rvh~FlE~WGLINy~~d~e~rp~-----~~~p~~t~h 153 (506)
T KOG1279|consen 80 KTPEVYMKYRNFIINTYRLNPQEYLTFTACRRNLAG-DVCAIARVHAFLEQWGLINYQVDAESRPH-----PIEPPETSH 153 (506)
T ss_pred CCHHHHHHHHHhhhhhhccCcccchhHHHHHhcccc-hHHHHHHHHhhHHhhcccccccChhhCCc-----ccCCCcccc
Confidence 999999999999999999999999999999999999 69999999999999999999999999883 356678888
Q ss_pred cccCCcccccccccccccCCCcCCCcccccC---CCCCCCCccCchhHHHhhccCCCCCCCCCCCCcceeecccCcCccc
Q 005942 189 VSVPSDALKSIDSLIKFDKPKCSLKVADVYS---SSCGGADFFDLDNTIRERLSENHCNYCSQPIPAVYYQSQKEVDVLL 265 (668)
Q Consensus 189 ~~~~~~~l~~~~~l~~fd~~~~~~~~~~i~s---~~~~~~d~~~l~~~~~~~~~~~~C~~C~~~~~~~~y~~~k~~d~~L 265 (668)
+++..++ ++++++++............. ......+...+..+..+.+...+|..|+.+ +|+..+..++.+
T Consensus 154 ~~~~~~t---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~c~~~~~~----~~~~~~~~~~~~ 226 (506)
T KOG1279|consen 154 FQVLADT---PRGLAPLTPEDPQSQPDLGNPRMETLSLESKIKSLHINAGEHLCAIHCFIKEDP----YYYDLTNRDVNL 226 (506)
T ss_pred cccccCC---CcccccCCCCCccccccccccccccccccccccccccChHhhccccchhccccc----hhhhcchhhhhh
Confidence 8887654 566666665433222111111 001111223333334556677788888765 677777678999
Q ss_pred ChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhCCCC
Q 005942 266 CPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPME 345 (668)
Q Consensus 266 C~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqLPIe 345 (668)
|.+||..|+++..++..||..+ ....+..||++|+++|||||++||++|++||.|||+||++|||.||++|||+
T Consensus 227 c~~c~~~g~~~~~~~~~Df~~~------~~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPie 300 (506)
T KOG1279|consen 227 CADCYDQGEFPSEFKKSDFKVI------GESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIE 300 (506)
T ss_pred hHHHHhcCCccCccccccchhc------cccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCcc
Confidence 9999999999999999999222 2345789999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCcccccccCCccCCCCCCchHHHHHHHHhhcChHHHHHHHHH
Q 005942 346 DGILENVEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHA 425 (668)
Q Consensus 346 D~fL~~~~~~~~s~~~~~~~~~d~~~~~~dsng~~~g~~~~~~~~~~~~PFs~a~NPVMS~VAFLas~V~P~VAaAAA~a 425 (668)
|+||.+.+. + .|++. .++.+|+..+|||||+++||+++|||+|+..+++.
T Consensus 301 D~~l~~~~~------------------------~-~~~~~-----~~~~~~sq~gnpv~s~~~~l~~~vdP~~~~~~~k~ 350 (506)
T KOG1279|consen 301 DPYLAKSEA------------------------S-LGPLS-----YGPVPFSQDGNPVMSTVAFLASVVDPVVKSVAAKS 350 (506)
T ss_pred chhhhhccc------------------------c-cCccc-----cCCCccccCCCccccHHHHHHhccCchhhhhhhcc
Confidence 999976321 1 23322 35688998889999999999999999999999999
Q ss_pred HHHHHHhhcccCCC-CCCC---CccccccccccCCC----------------------CCCCCCCCCcccccccHHHHHH
Q 005942 426 SLAALSKQMEGAGH-GNRM---NSENVHNREEENSG----------------------VHGPWGQNGAEAALLSAEKVKA 479 (668)
Q Consensus 426 Al~~l~~~~~~~~~-d~~~---~se~~~~~~~~~d~----------------------~~~~~~~n~~~~~~~s~~~vk~ 479 (668)
+.....+.+..... +.+. ..+..-....+.+. ......+.... ..+-.. +..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~e~~k~~~~~~~~~n~~~~-k~~e~~-~~~ 428 (506)
T KOG1279|consen 351 AEEKFSKVNEESPLAKIEVSAKGVEEAASKLGGTDKSKFLALSDIACTLPDEEEKLQSKLKAKLNPNKE-KTIELG-LST 428 (506)
T ss_pred cchhhhhhhhcccchhhhHHhhhhHHhhhhhccchhhhhhhhhhhhhcccchHHHHHHHhhcccccchh-hhhHHH-HHH
Confidence 99988776432100 0000 00000000000000 00000000000 011112 678
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005942 480 AAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRL 558 (668)
Q Consensus 480 Aa~~aL~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl 558 (668)
|+..+|++||.|||+||.+|| +++.+++.++++|++|+|.||++|+++|+++.+|++++++.|++++.+|..++..||
T Consensus 429 a~~~~ls~aa~k~k~la~~ee-~~~s~~~~~~~~q~~k~E~~l~~~~e~e~~~~~e~e~~~~~~~~~~~~~~~~~~~~l 506 (506)
T KOG1279|consen 429 AANAALSAAAVKAKLLAAQEE-RIKSLVALLEETQLKKLEAKLRHFEEAETLLMREREQLERVRQRLKAERQQFHMARL 506 (506)
T ss_pred HHHHHHHHHHHhhhhhhhHHH-HHHHHhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcchhhhhhcC
Confidence 899999999999999999999 999999999999999999999999999999999999999999999999999998775
No 3
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=99.93 E-value=5.2e-27 Score=204.56 Aligned_cols=86 Identities=43% Similarity=0.962 Sum_probs=78.5
Q ss_pred eeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHH
Q 005942 76 HVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFR 155 (668)
Q Consensus 76 ivIPs~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~ 155 (668)
+++|.+++||+++.+|++|++.+||||.| ++|+.|+.|||.||..|+.||.+|||+|+||+++.|.|+..+.|||+
T Consensus 1 ~~~~~~~~~~~~~~l~~~E~~~~~e~~~~----~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~~~d~~~~~ri~~ 76 (86)
T PF04433_consen 1 VVIPAHSSWFDPDKLSEIEKQLCPEFFIG----KTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIKGIDVNKIRRIYD 76 (86)
T ss_dssp -HCHCCHTTTTTTSS-HHHHHHCHHCTTS----CHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTTSSSHHHHHHHHH
T ss_pred CCCccccCCCCcccCCHHHHHHhHHHhcc----CChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHccccCHHHHHHHHH
Confidence 47899999999999999999999999998 89999999999999999999999999999999998767999999999
Q ss_pred hhhhhccccc
Q 005942 156 FLNHWGIINY 165 (668)
Q Consensus 156 FLE~WGLINY 165 (668)
||++||+|||
T Consensus 77 FL~~~G~INf 86 (86)
T PF04433_consen 77 FLERWGLINF 86 (86)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHcCccCC
Confidence 9999999998
No 4
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.1e-24 Score=227.24 Aligned_cols=110 Identities=31% Similarity=0.612 Sum_probs=101.1
Q ss_pred cCCCCCCCCCCCCc-ceeecccCcCcccChhhhhcCCCCCCCC-CCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 005942 239 SENHCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMY 316 (668)
Q Consensus 239 ~~~~C~~C~~~~~~-~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~ 316 (668)
.++.|++|..+|+. ++++|.+|.+|+||..||+.|.+.+.|+ +|+|.+|++..+ .....+||++||++||||+++|
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~--~i~~~~WtadEEilLLea~~t~ 90 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSF--PILDPSWTADEEILLLEAAETY 90 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecCCCC--CCCCCCCChHHHHHHHHHHHHh
Confidence 46899999999998 5699999999999999999999999997 799999998654 2467899999999999999999
Q ss_pred C-CCHHHHHHHhCCCCHHHHHHHHhhCCCCCCCcc
Q 005942 317 N-DNWNEIAEHVSTKSKAQCILHFVRLPMEDGILE 350 (668)
Q Consensus 317 g-~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~fL~ 350 (668)
| |||++||+||||||++||+.||++.+|+.++..
T Consensus 91 G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~ 125 (438)
T KOG0457|consen 91 GFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFP 125 (438)
T ss_pred CCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccc
Confidence 9 999999999999999999999999999887643
No 5
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=99.81 E-value=1.1e-20 Score=195.17 Aligned_cols=109 Identities=24% Similarity=0.485 Sum_probs=101.2
Q ss_pred cCCCCCCCCCCCCc-ceeecccCcCcccChhhhhcCCCCCCCC-CCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 005942 239 SENHCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMY 316 (668)
Q Consensus 239 ~~~~C~~C~~~~~~-~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~ 316 (668)
.+++|++|..+|+. +++.|.+|.+++||..||.+|.+.+.|+ .|+|.+|+.... .+...+|++.||++|+++.+..
T Consensus 4 ~k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietnsy--pI~~e~WgadEEllli~~~~Tl 81 (432)
T COG5114 4 VKIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETNSY--PIGEEGWGADEELLLIECLDTL 81 (432)
T ss_pred ceeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeeccCc--cccCCCcCchHHHHHHHHHHhc
Confidence 46799999999987 7999999999999999999999999997 899999988764 3568899999999999999999
Q ss_pred C-CCHHHHHHHhCCCCHHHHHHHHhhCCCCCCCc
Q 005942 317 N-DNWNEIAEHVSTKSKAQCILHFVRLPMEDGIL 349 (668)
Q Consensus 317 g-~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~fL 349 (668)
| |||++||+|||.|+++||..||+++++|..|.
T Consensus 82 GlGNW~dIadyiGsr~kee~k~HylK~y~es~~y 115 (432)
T COG5114 82 GLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYY 115 (432)
T ss_pred CCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccc
Confidence 9 99999999999999999999999999998774
No 6
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=99.07 E-value=9.6e-11 Score=90.98 Aligned_cols=45 Identities=38% Similarity=0.780 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCce
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYI 285 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~ 285 (668)
++|+.|+++|+.+||||+++.+++||.+||.+|+||.+|++.||+
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~f~~~~~s~Dfv 45 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQSSDFI 45 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhCcCCCCCCcccccC
Confidence 479999999999999999999999999999999999999999995
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.01 E-value=4.7e-10 Score=87.60 Aligned_cols=44 Identities=27% Similarity=0.681 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCC-HHHHHHHhC-CCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYNDN-WNEIAEHVS-TKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g~n-W~~IAe~Vg-tKT~~eCi~hFlqL 342 (668)
..||.+|+.+|+++|.+||.+ |..||++|+ +||..||+.||.++
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 479999999999999999966 999999999 99999999999864
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.76 E-value=1.2e-08 Score=82.76 Aligned_cols=41 Identities=34% Similarity=0.762 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 301 WSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 301 WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
||.+|+.+|++++..||.+|..||+++|+||+.+|..||..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.73 E-value=2.3e-08 Score=75.83 Aligned_cols=44 Identities=30% Similarity=0.686 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
..||.+|+.+|+.++..|| .+|..||+++++||+.+|..+|..+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5799999999999999999 9999999999999999999999875
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.64 E-value=5.7e-08 Score=72.66 Aligned_cols=43 Identities=33% Similarity=0.753 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 300 TWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 300 ~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.||.+|+.+|+.++..|| ++|..||+.+++||..+|..||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 499999999999999999 9999999999999999999999764
No 11
>PLN03000 amine oxidase
Probab=98.60 E-value=4.9e-08 Score=115.89 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCHHHHhh--cCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhh
Q 005942 80 MHSDWFSPDTVHRLERQV--VPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFL 157 (668)
Q Consensus 80 s~S~WF~~~~Ih~iEk~~--lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FL 157 (668)
..+.=|+.+++++.|..+ ||. - ..+.+..|+.|||.||.+|+.||..+||+++|...+-..-...+.++|+||
T Consensus 86 a~~~~~p~d~l~~~e~~~~~~~~-~----~~~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~L 160 (881)
T PLN03000 86 ALTAGFPADSLTEEEIEFGVVPI-V----GGIEQVNYILIRNHIISKWRENISSWVTKEMFLGSIPKHCSSLLDSAYNYL 160 (881)
T ss_pred HHHcCCCcccCCHHHHhccccCc-c----cccchhhHHHHHHHHHHHHHHCCceeecHHHHhhhcchhHHHHHHHHHHHH
Confidence 356789999999999776 662 1 246789999999999999999999999999999887653367899999999
Q ss_pred hhhcccccccCC
Q 005942 158 NHWGIINYCAAV 169 (668)
Q Consensus 158 E~WGLINYqvdp 169 (668)
.+.|+|||++..
T Consensus 161 ~r~G~in~g~~~ 172 (881)
T PLN03000 161 VTHGYINFGIAQ 172 (881)
T ss_pred HHcCcccHHHHH
Confidence 999999999863
No 12
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.48 E-value=1.5e-07 Score=111.41 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=75.8
Q ss_pred CCCCCCCCCCCHHHHhh-cCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhh
Q 005942 81 HSDWFSPDTVHRLERQV-VPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNH 159 (668)
Q Consensus 81 ~S~WF~~~~Ih~iEk~~-lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~ 159 (668)
.+.=|+.+++|+.|..+ |++.-.+ +.+..|+.|||.||.+|+.||..|||+++|+..+-......+.++|.||.+
T Consensus 138 ~~~~~p~~~l~~~e~~~~~~~~~~~----~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~l~~ 213 (808)
T PLN02328 138 ISVGFPVDSLTEEEIEANVVSTIGG----TEQANYIVVRNHILARWRSNVSNWLTRDHALESIRAEHKNLVDSAYNFLLE 213 (808)
T ss_pred HHcCCCCccCCHHHHhhcCcchhcc----cceeehhhHHHHHHHHHHhCCcceecHHHHHhhcchhhHHHHHHHHHHHhc
Confidence 35789999999998777 7666543 789999999999999999999999999999987644335789999999999
Q ss_pred hcccccccCCCCC
Q 005942 160 WGIINYCAAVQSP 172 (668)
Q Consensus 160 WGLINYqvdp~~~ 172 (668)
-|.|||.|.|...
T Consensus 214 ~g~in~gv~~~~~ 226 (808)
T PLN02328 214 HGYINFGVAPVIK 226 (808)
T ss_pred cCceeeecccccc
Confidence 9999999998654
No 13
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.43 E-value=2.4e-07 Score=73.22 Aligned_cols=47 Identities=34% Similarity=0.680 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCc-ceeecccCcCcccChhhhhcCCCCCCCC-CCCceec
Q 005942 241 NHCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRV 287 (668)
Q Consensus 241 ~~C~~C~~~~~~-~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~v 287 (668)
+.|++|.+++.. .+|+|.+|.+++||.+||..|.+...|+ +|.|+.|
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~~ 49 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRVV 49 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEeC
Confidence 469999999887 8999999999999999999999999997 7888865
No 14
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=98.17 E-value=1.6e-06 Score=68.67 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=40.5
Q ss_pred CCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCcee
Q 005942 242 HCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIR 286 (668)
Q Consensus 242 ~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~ 286 (668)
.|++|.+ ++..++|+|.+|.+++||.+||..|.+..+|+ +|.|..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~ 48 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYE 48 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCccc
Confidence 6999999 99999999999999999999999999988886 566643
No 15
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.10 E-value=3.4e-06 Score=86.85 Aligned_cols=46 Identities=15% Similarity=0.421 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg-tKT~~eCi~hFlqL 342 (668)
....||.+|+.+|+++|++|| .+|..||++++ +||..||+.||.++
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~ 71 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNY 71 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHh
Confidence 356899999999999999999 79999999997 79999999999976
No 16
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=98.08 E-value=3.3e-06 Score=66.83 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=41.2
Q ss_pred CCCCCC-CCCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCcee
Q 005942 242 HCNYCS-QPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIR 286 (668)
Q Consensus 242 ~C~~C~-~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~ 286 (668)
.|++|+ .++...+|+|..|.+++||.+||..|..+..|+ +|.|+.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~ 48 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC 48 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence 699999 789999999999999999999999999999997 787764
No 17
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.07 E-value=6.3e-06 Score=67.37 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCH---HHHHHHhC-CC-CHHHHHHHHhhCCC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNW---NEIAEHVS-TK-SKAQCILHFVRLPM 344 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW---~~IAe~Vg-tK-T~~eCi~hFlqLPI 344 (668)
+..||++|..++|+||+.|| ||| .+|+++++ ++ |+.||..|+-.+.+
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35799999999999999999 599 99999987 57 99999999877654
No 18
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.06 E-value=3.6e-06 Score=66.39 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=37.6
Q ss_pred CCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCC
Q 005942 242 HCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSS 281 (668)
Q Consensus 242 ~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss 281 (668)
.|++|...+..++|+|.+|.|++||..||..|.+..+|+.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~ 41 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHED 41 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCCccCCCCCC
Confidence 5999999888899999999999999999999999999974
No 19
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=98.06 E-value=3.8e-06 Score=66.60 Aligned_cols=44 Identities=34% Similarity=0.684 Sum_probs=39.5
Q ss_pred CCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCce
Q 005942 242 HCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYI 285 (668)
Q Consensus 242 ~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~ 285 (668)
.|++|++ ++...+|+|.+|.+++||..||..|++...|+ .|.++
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~ 47 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMK 47 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCee
Confidence 5999996 68899999999999999999999999999997 56654
No 20
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=98.03 E-value=4.6e-06 Score=64.48 Aligned_cols=40 Identities=33% Similarity=0.630 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCC
Q 005942 240 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGH 279 (668)
Q Consensus 240 ~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~h 279 (668)
...|+.|+.++...+|+|..|.+++||.+||..|+++..|
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~~~h 43 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEH 43 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcCCCC
Confidence 4679999999999999999999999999999999988766
No 21
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=98.02 E-value=5.4e-06 Score=64.59 Aligned_cols=45 Identities=29% Similarity=0.705 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCceec
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRV 287 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~v 287 (668)
+.|+.|++++...+|+|..|.+++||.+||..+. ..|. .|.|.++
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~--~~H~~~H~~~~~ 46 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI 46 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc--CCCCCCCCEeEC
Confidence 4699999999999999999999999999999997 5665 6887653
No 22
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.99 E-value=6.2e-06 Score=63.63 Aligned_cols=42 Identities=29% Similarity=0.558 Sum_probs=38.3
Q ss_pred CCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceec
Q 005942 242 HCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRV 287 (668)
Q Consensus 242 ~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~v 287 (668)
.|++|+.++...+|+|..|.+++||.+||..+ +|..|.|+++
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~----~H~~H~f~~~ 43 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG----VHPEHAMLKI 43 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC----CCCCCCEEeC
Confidence 69999999999999999999999999999987 6778888764
No 23
>PLN02529 lysine-specific histone demethylase 1
Probab=97.98 E-value=6.6e-06 Score=97.16 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=72.2
Q ss_pred CCCCCCCCCCCHHHHhh--cCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhh
Q 005942 81 HSDWFSPDTVHRLERQV--VPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLN 158 (668)
Q Consensus 81 ~S~WF~~~~Ih~iEk~~--lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE 158 (668)
++.=|+.+++.+.|+++ +|+. -.+.++.|+.|||.|+.+|+.||..|||+++++..+..+-...|.+.|.||.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~yl~irn~il~~w~~np~~~~~~~~a~~~~~~~i~~ci~~c~~~l~ 137 (738)
T PLN02529 63 LSVGFPIDALLEEEIRAGVVREL-----GGKEQNDYIVVRNHILARWRSNVGIWLSKGQIKETVSSEYEHLISAAYDFLL 137 (738)
T ss_pred HHcCCCccccCHHHHhccccCcc-----ccccceeeehHHHHHHHHHHHCCceeecHHHHhhhchhhHHHHHHHHHHHHH
Confidence 45679999999999854 5543 3789999999999999999999999999999988764422445678999999
Q ss_pred hhcccccccCCCC
Q 005942 159 HWGIINYCAAVQS 171 (668)
Q Consensus 159 ~WGLINYqvdp~~ 171 (668)
+-|.|||.|.|..
T Consensus 138 ~~~~inc~vnp~~ 150 (738)
T PLN02529 138 YNGYINFGVSPSF 150 (738)
T ss_pred hCCCcceeecccc
Confidence 9999999999864
No 24
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.89 E-value=1.2e-05 Score=63.47 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=37.9
Q ss_pred CCCCCCCC-CCCcceeecccCc--CcccChhhhhcCCCCCCCC-CCCceec
Q 005942 241 NHCNYCSQ-PIPAVYYQSQKEV--DVLLCPECFHEGRFVTGHS-SLDYIRV 287 (668)
Q Consensus 241 ~~C~~C~~-~~~~~~y~~~k~~--d~~LC~~CF~~G~~~~~hs-s~df~~v 287 (668)
+.|++|+. ++..++|+|..|. +++||.+||..|. .|+ +|.|.++
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~---~H~~~H~~~~i 48 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE---SHQEDHWLVKI 48 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC---CCCCCCceeeC
Confidence 46999998 8999999999999 9999999999997 665 5666653
No 25
>PLN03091 hypothetical protein; Provisional
Probab=97.87 E-value=1.5e-05 Score=87.63 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg-tKT~~eCi~hFlqL 342 (668)
...||.+|+.+|+++|++|| ++|..||++++ +||..||+.||.++
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~Ny 60 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhc
Confidence 46799999999999999999 89999999998 79999999999875
No 26
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=97.74 E-value=1e-05 Score=63.20 Aligned_cols=41 Identities=34% Similarity=0.686 Sum_probs=31.2
Q ss_pred CCCCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCC
Q 005942 240 ENHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS 280 (668)
Q Consensus 240 ~~~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs 280 (668)
...|+.|+. ++...+|+|..|.|++||..||..|++...|+
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~ 45 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHK 45 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSS
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcC
Confidence 467999999 77789999999999999999999999887764
No 27
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.71 E-value=3.2e-05 Score=79.90 Aligned_cols=45 Identities=13% Similarity=0.406 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg-tKT~~eCi~hFlqL 342 (668)
..+||.+|+.+|.+.|++|| ++|..|+++.| .|+..+|+++|+.+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~Ny 55 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNY 55 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcc
Confidence 47999999999999999999 99999999999 89999999999964
No 28
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.64 E-value=5.9e-05 Score=77.83 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...+.||.+|+.+||+.+..||..|..||+++.+||..+|..||..+
T Consensus 76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~ 122 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTH 122 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999753
No 29
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.57 E-value=7.1e-05 Score=58.44 Aligned_cols=42 Identities=24% Similarity=0.600 Sum_probs=36.0
Q ss_pred CCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCceec
Q 005942 242 HCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRV 287 (668)
Q Consensus 242 ~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~v 287 (668)
.|++|+. ++...+|+|..|.|++||..||..+ .|+ .|.|.||
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~----~H~~~H~F~ri 45 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR----KHNTRHTFGRI 45 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCCC----CcCCCCceeeC
Confidence 6999985 7888999999999999999999985 464 6888775
No 30
>PLN03091 hypothetical protein; Provisional
Probab=97.34 E-value=0.00028 Score=77.94 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
+..+.||.+|+.+||+.+..||..|.+||+++..||..+|..||..+
T Consensus 65 IkKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC 111 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999764
No 31
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.31 E-value=0.00025 Score=55.41 Aligned_cols=41 Identities=24% Similarity=0.603 Sum_probs=34.4
Q ss_pred CCCCCC-CCCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCcee
Q 005942 242 HCNYCS-QPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIR 286 (668)
Q Consensus 242 ~C~~C~-~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~ 286 (668)
.|+.|+ .++...+|+|..|.+++||.+||..+ .|+ .|.|.+
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~----~H~~~H~f~r 44 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGD----KHDLEHRFYR 44 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCCC----CCCCCCCEEe
Confidence 699999 67788999999999999999999963 353 677765
No 32
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.85 E-value=0.0016 Score=67.30 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHH
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHF 339 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hF 339 (668)
....||.+||.+|+++...+|.-|..||.++.+||..++..||
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~W 103 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHW 103 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHH
Confidence 4678999999999999999999999999999999999999988
No 33
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=96.62 E-value=0.0016 Score=49.89 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCC
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGR 274 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~ 274 (668)
+.|+.|.+.+ ..+|+|+.|.||+||..||..+.
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~~~ 33 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNTKN 33 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCCCC
Confidence 4699999855 49999999999999999998754
No 34
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.34 E-value=0.0043 Score=71.09 Aligned_cols=47 Identities=26% Similarity=0.666 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...+.||.+|+.+|+-||++|| .+|-+|-+.|.+|+..||+.+|++.
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence 3457899999999999999999 7999999999999999999999874
No 35
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.25 E-value=0.0028 Score=48.99 Aligned_cols=31 Identities=35% Similarity=0.771 Sum_probs=28.4
Q ss_pred CCCCCCC-CCCcceeecccCcCcccChhhhhc
Q 005942 242 HCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHE 272 (668)
Q Consensus 242 ~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~ 272 (668)
.|+.|+. ++...+|+|..|.+++||..||..
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 6999996 888899999999999999999965
No 36
>PLN02976 amine oxidase
Probab=95.91 E-value=0.012 Score=73.99 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=69.8
Q ss_pred CCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhh-ccCCC----ChhHHHHHHHh
Q 005942 82 SDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG-LVDGV----SPEDLTRIFRF 156 (668)
Q Consensus 82 S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~-~L~gd----dv~~i~RVH~F 156 (668)
+.=+.-..|.+|||-.|.|...-| -.-+.|+++||.|+-.|-++=.+-|-+|+|-= -.... -...|.-|+.|
T Consensus 452 ~~gl~a~~~~~~e~~~~k~~lkr~---~~~q~yl~cr~~~l~~w~k~~~~~l~~~~c~v~~~~~~~e~~~~~l~r~~~~f 528 (1713)
T PLN02976 452 SAGLKARAVGPIEKIKFKEVLKRK---GGLQEYLECRNMILGLWSKDVSRILPLADCGVTDTPSEDESPRASLIREVYLF 528 (1713)
T ss_pred hccccccccChHHHHHHHHHHHhc---cchHHHHHHHHHHHHHhhhhhhhcccHhhccccCCcccccCchhhHHHHHHHH
Confidence 344666789999999999998644 35789999999999999999999999999941 11111 15678889999
Q ss_pred hhhhcccccccCCC
Q 005942 157 LNHWGIINYCAAVQ 170 (668)
Q Consensus 157 LE~WGLINYqvdp~ 170 (668)
|+|.|.||-++..+
T Consensus 529 ld~~gyin~g~~s~ 542 (1713)
T PLN02976 529 LDQRGYINAGIASE 542 (1713)
T ss_pred hhccCceecccccc
Confidence 99999999998764
No 37
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.57 E-value=0.011 Score=67.83 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCH---HHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSK---AQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~---~eCi~hFlqL 342 (668)
..+.||-+|+..||++|++|| |+|-++|-.+|.||. .-|+.+|+..
T Consensus 411 K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 411 KVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred ccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence 357899999999999999999 999999999999998 6699999865
No 38
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=95.29 E-value=0.011 Score=62.81 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=37.8
Q ss_pred CCCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecC
Q 005942 241 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVD 288 (668)
Q Consensus 241 ~~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd 288 (668)
..|+.|+. .+...+|+|..|.|++||.+|+..+ ..|-.|-+.++-
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~---~~h~~H~~lR~~ 198 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN---EHHAAHAMLRLH 198 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC---CCCcccceeecc
Confidence 58999999 8999999999999999999999876 344566777643
No 39
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.23 E-value=0.012 Score=50.90 Aligned_cols=44 Identities=34% Similarity=0.658 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHH--c----C------C--CHHHHHHHhC----CCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEM--Y----N------D--NWNEIAEHVS----TKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~--~----g------~--nW~~IAe~Vg----tKT~~eCi~hFlqL 342 (668)
..||++|+..||+.+.. + + + -|..||+.+. .||+.||..+|-.|
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999977 2 1 1 5999999985 59999999999886
No 40
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=94.44 E-value=0.018 Score=67.12 Aligned_cols=43 Identities=35% Similarity=0.774 Sum_probs=37.1
Q ss_pred CCCCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCCCC
Q 005942 240 ENHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSL 282 (668)
Q Consensus 240 ~~~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~ 282 (668)
...|+.|.+ +|..++|+|++|-+++||..||..|+-..+|+-|
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~ 646 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMH 646 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCC
Confidence 357999964 4667899999999999999999999999998754
No 41
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=93.54 E-value=0.041 Score=59.43 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCc-ceeecccCcCcccChhhhhcCCCCCCCC
Q 005942 240 ENHCNYCSQPIPA-VYYQSQKEVDVLLCPECFHEGRFVTGHS 280 (668)
Q Consensus 240 ~~~C~~C~~~~~~-~~y~~~k~~d~~LC~~CF~~G~~~~~hs 280 (668)
...|+.|++.--. -+|+|..|.||+||..||.+|.-...|.
T Consensus 8 ~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~ 49 (381)
T KOG1280|consen 8 GVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHD 49 (381)
T ss_pred CceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccC
Confidence 3579999986533 5899999999999999999997766664
No 42
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=93.42 E-value=0.089 Score=60.89 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+..|-..+..+|++|..|++.+| |.|..|+.||-++
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lg-r~P~~crd~wr~~ 427 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKALG-RMPMDCRDRWRQY 427 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHHc-cCcHHHHHHHHHh
Confidence 56789999999999999999999999999998 7999999999986
No 43
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=90.82 E-value=0.22 Score=57.86 Aligned_cols=51 Identities=25% Similarity=0.484 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHH-------Hc------------------C-CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 005942 297 DGETWSDQETFLLLEGIE-------MY------------------N-DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 347 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe-------~~------------------g-~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~ 347 (668)
....||-+|+.+||..|+ .| . =+|..|++.+|||+..||+.||-+|=+...
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence 457899999999999995 33 1 389999999999999999999999866544
No 44
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=90.05 E-value=0.44 Score=56.07 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
..+-||..|..++-+||-.|..|+..|++.|.+||..||+..|.-
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHH
Confidence 457899999999999999999999999999999999999998853
No 45
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.85 E-value=0.29 Score=55.50 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
+.-|+..|+..|--+|.+|| ..|.+|+..+..||+.||..+|-.
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e 51 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEE 51 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHH
Confidence 56799999999999999999 899999999999999999999974
No 46
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=89.18 E-value=0.17 Score=54.72 Aligned_cols=41 Identities=29% Similarity=0.659 Sum_probs=34.7
Q ss_pred CCCCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCC
Q 005942 240 ENHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS 280 (668)
Q Consensus 240 ~~~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs 280 (668)
...|++|.. .+...+|.|+.|.++.+|.+||-.|+-...|+
T Consensus 240 pv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~~g~~hs 281 (434)
T KOG4301|consen 240 PVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGHAGGSHS 281 (434)
T ss_pred CccCcceecccccchhhhHhhcCCccccchhhccccCCCCcc
Confidence 356999964 45668999999999999999999999877775
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=88.44 E-value=0.86 Score=50.09 Aligned_cols=45 Identities=13% Similarity=0.386 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
....||..|..++..|+.++|.++.-|+....+|...|+..+|++
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999985
No 48
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=88.37 E-value=0.91 Score=38.57 Aligned_cols=44 Identities=30% Similarity=0.445 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-----------------CCHHHHHHHhC-----CCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-----------------DNWNEIAEHVS-----TKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-----------------~nW~~IAe~Vg-----tKT~~eCi~hFlqL 342 (668)
..||.+|...|++.|+.|. .-|.+|++.+. .||..|+..+|-.+
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nl 68 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNL 68 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999882 35999999994 59999999998764
No 49
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.01 E-value=14 Score=44.65 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcC--CCHHHHHHHhCCCCHHHHHHHH
Q 005942 302 SDQETFLLLEGIEMYN--DNWNEIAEHVSTKSKAQCILHF 339 (668)
Q Consensus 302 T~~Eel~LLeaIe~~g--~nW~~IAe~VgtKT~~eCi~hF 339 (668)
+--|..+||-++-..+ +-.++|=+.+-+.-..+-+.+|
T Consensus 250 mm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF 289 (1102)
T KOG1924|consen 250 MMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERF 289 (1102)
T ss_pred HHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhh
Confidence 5556677777765544 3444555554443333334444
No 50
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=86.05 E-value=0.65 Score=52.81 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....|+.+|+.+||.+....-.-|-.|+.-|| ||..+|..||..+
T Consensus 58 ~~tews~eederlLhlakl~p~qwrtIa~i~g-r~~~qc~eRy~~l 102 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPTQWRTIADIMG-RTSQQCLERYNNL 102 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCccchHHHHhh-hhHHHHHHHHHHH
Confidence 35689999999999999999999999999998 7999999999886
No 51
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=85.35 E-value=3.8 Score=49.04 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=14.4
Q ss_pred cccCCcceeCCCCCCCCCCCCCCHHHH
Q 005942 69 KRFGSRVHVLPMHSDWFSPDTVHRLER 95 (668)
Q Consensus 69 k~~~~~~ivIPs~S~WF~~~~Ih~iEk 95 (668)
|+..+-.+.++|.++-.++-+...++-
T Consensus 52 ~sk~~~~H~~~ss~sn~d~pt~q~~q~ 78 (1102)
T KOG1924|consen 52 KSKPSPAHLRSSSASNNDYPTAQGLQD 78 (1102)
T ss_pred ccCCCcccCCCccccccCCcccccHHH
Confidence 334444455666666666655544443
No 52
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.33 E-value=0.72 Score=45.39 Aligned_cols=44 Identities=18% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHc---C----CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMY---N----DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~---g----~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.+.||.+|+++|-|.|-.| | .-.++|++.++ ||+.-|-.+|..+
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~-RTsAACGFRWNs~ 54 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN-RTAAACGFRWNAY 54 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-ccHHHhcchHHHH
Confidence 3679999999999999988 3 46888999995 8999999999865
No 53
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=84.93 E-value=1.1 Score=48.72 Aligned_cols=46 Identities=28% Similarity=0.495 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHc----------CCCHHHHHHHh---C-CCCHHHHHHHHhhCCC
Q 005942 299 ETWSDQETFLLLEGIEMY----------NDNWNEIAEHV---S-TKSKAQCILHFVRLPM 344 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~----------g~nW~~IAe~V---g-tKT~~eCi~hFlqLPI 344 (668)
..|+.+|++.||++.... +-.|..||+.+ | .||+.||..+|-.|..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 689999999999998643 14499999944 3 4999999999988855
No 54
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.86 E-value=8.1 Score=47.02 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 475 EKVKAAAKAGLA-AAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTR 552 (668)
Q Consensus 475 ~~vk~Aa~~aL~-aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~ 552 (668)
..+..|...+|- ..-.+|+.+...++.++++|+..|.+. .+++|.+...++++..-+++.+++||+.++.|-.+|..
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~-~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEEL-ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666664 456889999999999999999988653 33355555555555555555555555554444444443
No 55
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.59 E-value=8.9 Score=46.59 Aligned_cols=78 Identities=17% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 475 EKVKAAAKAGLA-AAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRI 553 (668)
Q Consensus 475 ~~vk~Aa~~aL~-aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~ 553 (668)
..+..|...+|- ..-.+|+.+...++.++++|+..|.+. .+++|.+....+.+..-+++++++||+.+++|-.+|..+
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~-~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSAL-EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666664 456889999999999999999988543 333555555555555555555555554444444444333
No 56
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=81.54 E-value=0.87 Score=52.33 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHH
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHF 339 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hF 339 (668)
.+.|+..|+..|+-+++.|| .||.+||..++.+++++|..||
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw 62 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRW 62 (512)
T ss_pred CCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchh
Confidence 46899999999999999999 8999999999999999999999
No 57
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=79.13 E-value=1.8 Score=50.19 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHH----------HHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEI----------AEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~I----------Ae~VgtKT~~eCi~hFlqL 342 (668)
...||.+|+.-+.+||..+|.|+++| -..+..||+.|.+.||.++
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~ 142 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRL 142 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH
Confidence 46899999999999999999999999 3334468999999999875
No 58
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=78.27 E-value=2 Score=49.52 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....|+.+|+..|++.-..++.-|..||.+++.+|..+|..+|+.+
T Consensus 71 k~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~ 116 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNT 116 (512)
T ss_pred ccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999954
No 59
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=74.16 E-value=4.2 Score=46.06 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=13.6
Q ss_pred CCCcCCCCCCCCCCCCCC
Q 005942 585 RPQVMSASSSQPSIPGYS 602 (668)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~ 602 (668)
-|.++|..+|-|-|+|++
T Consensus 526 ~P~~~PSA~P~P~M~~~~ 543 (654)
T COG5180 526 FPMGGPSASPNPMMNGFA 543 (654)
T ss_pred ccCCCCCCCCCCCcCCcc
Confidence 457788888888888843
No 60
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=74.11 E-value=4.2 Score=44.81 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHH-HHhCCCCHHHHHHHHhhCCCC
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEIA-EHVSTKSKAQCILHFVRLPME 345 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~IA-e~VgtKT~~eCi~hFlqLPIe 345 (668)
-..|+.+|=..+=++|+.||.|+..|- ..|.||+.-||+..|..--..
T Consensus 277 l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWKkS 325 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWKKS 325 (445)
T ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhhcC
Confidence 368999999999999999999999995 578999999999988765443
No 61
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=72.75 E-value=4.6 Score=46.93 Aligned_cols=96 Identities=19% Similarity=0.332 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHH-----HH
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI-----EM 315 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaI-----e~ 315 (668)
..|.-|+... ..+.|.. ..+.+|..|-.--|.. - .+|+. ..-+.||.+|...|..+= +.
T Consensus 24 k~CADCgs~~--P~WASiN-lGIFICi~CSGIHRsL------G-hRVKS------LSLDkWT~EEVe~Mk~gGN~~AN~i 87 (648)
T PLN03119 24 RRCINCNSLG--PQYVCTT-FWTFVCMACSGIHREF------T-HRVKS------VSMSKFTSKEVEVLQNGGNQRAREI 87 (648)
T ss_pred CccccCCCCC--CCceeec-cceEEeccchhhhccC------C-ceeec------cccCCCCHHHHHHHHHhchHHHHHH
Confidence 4788888643 5555554 3688999996543332 1 14443 234689998865443211 12
Q ss_pred cCCCHHHHHHHhCCCCHHHHHHHHhhC-CCCCCCccCC
Q 005942 316 YNDNWNEIAEHVSTKSKAQCILHFVRL-PMEDGILENV 352 (668)
Q Consensus 316 ~g~nW~~IAe~VgtKT~~eCi~hFlqL-PIeD~fL~~~ 352 (668)
|..+|..--..+...+..+-+..||+. |++..|....
T Consensus 88 yeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~ 125 (648)
T PLN03119 88 YLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGAN 125 (648)
T ss_pred HHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcC
Confidence 234565432233333445556678874 7777776543
No 62
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=70.72 E-value=5.6 Score=37.40 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhC------------CCCHHHHHHHHhh
Q 005942 297 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVS------------TKSKAQCILHFVR 341 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~Vg------------tKT~~eCi~hFlq 341 (668)
.+..||.+|+--||-.+.+|| |+|+.|-+.|- +||+.++..|-..
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t 108 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT 108 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence 357899999999999999998 79999998874 7899888776543
No 63
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=69.01 E-value=80 Score=36.94 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=6.4
Q ss_pred ccccCCCCC
Q 005942 656 MIRSASGTS 664 (668)
Q Consensus 656 ~~~~~~~~~ 664 (668)
-+|.|.|+.
T Consensus 268 hIRaViGet 276 (582)
T PF03276_consen 268 HIRAVIGET 276 (582)
T ss_pred HHHhhhCCC
Confidence 378888864
No 64
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=68.09 E-value=8.4 Score=31.51 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 111 PEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 111 pe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
-++|-.+|+.|.+- +.-|.++| +..+--+.+ |+....+.+....|+.+|+|--
T Consensus 3 ~~i~~~l~~~I~~g-~~~~g~~lps~~~la~~~-~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 3 EQIYDQLRQAILSG-RLPPGDRLPSERELAERY-GVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp HHHHHHHHHHHHTT-SS-TTSBE--HHHHHHHH-TS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcC-CCCCCCEeCCHHHHHHHh-ccCCcHHHHHHHHHHHCCcEEE
Confidence 46788899988876 46688999 888854433 4457889999999999999954
No 65
>PLN03131 hypothetical protein; Provisional
Probab=65.42 E-value=8.3 Score=45.27 Aligned_cols=94 Identities=18% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHH------H
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGI------E 314 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaI------e 314 (668)
..|.-|+... ..+.|.. ..+.+|..|-.--|... .+|+. ..-+.||++|...| +.+ +
T Consensus 24 k~CADCga~~--P~WASiN-lGIFICi~CSGIHRsLg-------hRVKS------VTLD~WtdeEV~~M-k~gGN~~AN~ 86 (705)
T PLN03131 24 RRCINCNSLG--PQFVCTN-FWTFICMTCSGIHREFT-------HRVKS------VSMSKFTSQDVEAL-QNGGNQRARE 86 (705)
T ss_pred CccccCCCCC--CCeeEec-cceEEchhchhhhcccC-------ccccc------ccCCCCCHHHHHHH-HHhccHHHHH
Confidence 4688888643 4455544 46889999975443321 14443 22468999886543 332 2
Q ss_pred HcCCCHHHHHHHhCCCCHHHHHHHHhh-CCCCCCCccC
Q 005942 315 MYNDNWNEIAEHVSTKSKAQCILHFVR-LPMEDGILEN 351 (668)
Q Consensus 315 ~~g~nW~~IAe~VgtKT~~eCi~hFlq-LPIeD~fL~~ 351 (668)
.|..+|..--..+...+..+-+..||+ -|++..|+..
T Consensus 87 iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~ 124 (705)
T PLN03131 87 IYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGG 124 (705)
T ss_pred HHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcC
Confidence 233566543333444445556677887 4677777654
No 66
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=65.09 E-value=4.2 Score=28.81 Aligned_cols=27 Identities=33% Similarity=0.806 Sum_probs=12.5
Q ss_pred CCCCCCCCCCc-ceeecccCcCcccChhh
Q 005942 242 HCNYCSQPIPA-VYYQSQKEVDVLLCPEC 269 (668)
Q Consensus 242 ~C~~C~~~~~~-~~y~~~k~~d~~LC~~C 269 (668)
.|+.|+.++.. ..|.|..| ++.|...|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~C-df~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSEC-DFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT------HHH
T ss_pred cCCcCCCcCCCCceEECccC-CCccChhc
Confidence 59999999988 89999998 78887777
No 67
>PF15324 TALPID3: Hedgehog signalling target
Probab=64.19 E-value=97 Score=38.92 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH--HHHHHHH-------HHH--HHhHH----HHHHHHHH
Q 005942 473 SAEKVKAAAKAGLAAAATKAKLFADHEEREIQRLS---ANII--NHQLKRL-------ELK--LKQFA----EVETLLMR 534 (668)
Q Consensus 473 s~~~vk~Aa~~aL~aAA~kAk~lA~~EErEI~rLv---~~iI--e~QLkKL-------ElK--Lk~fe----eLE~~le~ 534 (668)
+...|.+|+++|+++||---|...|.| -++.... +.|= +.||+.+ +.| --|.. .|-.+|+.
T Consensus 61 SAtTVAAATAAAIATaAPLiKvQSdLE-AKVnsVselL~KLQEtDkqLqrvteqQt~i~~~~ek~~ch~~EkQmn~fmeQ 139 (1252)
T PF15324_consen 61 SATTVAAATAAAIATAAPLIKVQSDLE-AKVNSVSELLNKLQETDKQLQRVTEQQTSIQNQHEKLHCHDHEKQMNVFMEQ 139 (1252)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhcchHH-HHHHHHHHHHHHhhhhhcchhhhhhhhccccccccccchhhHHHHHHHHHHH
Confidence 456788888888988886555555443 2222221 1110 1111111 110 01122 34456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 005942 535 ECEQVEKARQRFATERTRIVSTRLGPGGVP 564 (668)
Q Consensus 535 Er~~LE~~Rq~L~~eR~~~~~~rl~~~~~~ 564 (668)
-.+-||+.+||.+.-+-.|+...|.+|+.-
T Consensus 140 ~l~HLEKLQqQQi~iQshfIsSAl~~~s~q 169 (1252)
T PF15324_consen 140 HLRHLEKLQQQQIDIQSHFISSALKTGSLQ 169 (1252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 778899999999999999999999987755
No 68
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=61.24 E-value=11 Score=34.20 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHc----C----CCHHHHHHHhCC-----CCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMY----N----DNWNEIAEHVST-----KSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~----g----~nW~~IAe~Vgt-----KT~~eCi~hFlqL 342 (668)
..-||+++|+.||+|+-.| | .||...-++|.. =|..|...+.-+|
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrL 61 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRL 61 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 4679999999999999888 4 589998888853 2566666655544
No 69
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=60.74 E-value=50 Score=33.94 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 509 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFA 547 (668)
Q Consensus 509 ~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~ 547 (668)
.+++...+.+|...+-| +||+-|+.+|+.|-..|+.-|
T Consensus 160 ~~~~~k~~emE~Qv~IL-~lE~~L~~ar~~L~~lRk~~Y 197 (200)
T smart00307 160 SLHEGKTQEMEQQVEIL-KLENELEAARKKLAEIRKQHY 197 (200)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666677777 788888888888877776644
No 70
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=60.63 E-value=9.4 Score=33.28 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHc---C----------CCHHHHHHHhC-----CCCHHHHHHHHhhC
Q 005942 300 TWSDQETFLLLEGIEMY---N----------DNWNEIAEHVS-----TKSKAQCILHFVRL 342 (668)
Q Consensus 300 ~WT~~Eel~LLeaIe~~---g----------~nW~~IAe~Vg-----tKT~~eCi~hFlqL 342 (668)
.||++++..||+.+... | ..|+.|++.+. ..|..||..||-.|
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 49999999999998543 1 35899999885 36889999998765
No 71
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=58.39 E-value=12 Score=43.42 Aligned_cols=95 Identities=9% Similarity=-0.048 Sum_probs=72.3
Q ss_pred eCCCCCCCCCCCCCCHHHHhhcCcccCCCC-CCCChHHHHHHHHHHHHHHHhCCCceee-----HHHHhhccCC-CChhH
Q 005942 77 VLPMHSDWFSPDTVHRLERQVVPHFFSGKS-PDHTPEKYMECRNHIVAKYMDNPEKRLI-----VSDCQGLVDG-VSPED 149 (668)
Q Consensus 77 vIPs~S~WF~~~~Ih~iEk~~lPefF~g~~-~~ktpe~Y~~~RN~iI~~yr~np~eyLT-----~t~cr~~L~g-ddv~~ 149 (668)
..+.+++=++...=+.-.....++|+.+++ ....+..|+.+|+.+++.++---.-+.+ -+..+++.+. ..+-.
T Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~c~~~~~~~~~~~~~~~~~~c~~c~~~g~~~~~~~~~Df~~~~~~~~~~WT~qE~lLL 264 (506)
T KOG1279|consen 185 TLSLESKIKSLHINAGEHLCAIHCFIKEDPYYYDLTNRDVNLCADCYDQGEFPSEFKKSDFKVIGESARPNWTEQETLLL 264 (506)
T ss_pred cccccccccccccChHhhccccchhccccchhhhcchhhhhhhHHHHhcCCccCccccccchhccccCCCCccHHHHHHH
Confidence 667778888888888899999999998873 3677888899999999998754444433 3445555442 13677
Q ss_pred HHHHHHhhhhhcccccccCCCC
Q 005942 150 LTRIFRFLNHWGIINYCAAVQS 171 (668)
Q Consensus 150 i~RVH~FLE~WGLINYqvdp~~ 171 (668)
+=+|+.|.+.|+.|+.+|--.+
T Consensus 265 LE~ie~y~ddW~kVa~hVg~ks 286 (506)
T KOG1279|consen 265 LEAIEMYGDDWNKVADHVGTKS 286 (506)
T ss_pred HHHHHHhcccHHHHHhccCCCC
Confidence 8899999999999999998543
No 72
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=57.99 E-value=14 Score=46.28 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHH
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILH 338 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~h 338 (668)
..||..+-..++.|.++|| +|-..||..|++||++|+..+
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y 865 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERY 865 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHH
Confidence 4799999999999999999 999999999999999998764
No 73
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.10 E-value=44 Score=38.21 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=12.3
Q ss_pred CCCCCCCCCC---CCCCCCCCCcccc
Q 005942 606 PVHPHMQFRP---QQMFPLGQRMPLT 628 (668)
Q Consensus 606 ~~~~~~~~~~---~~~~~~~~~~~~~ 628 (668)
|.||-+++++ -+|-||+.+-|+-
T Consensus 430 ~~hP~~~~p~~~~g~~~P~~~mpp~~ 455 (483)
T KOG2236|consen 430 QPHPPESNPPANFGQANPFNQMPPAY 455 (483)
T ss_pred CCCCCCCCCcccccccCccccCCCCC
Confidence 4555555553 3555566666655
No 74
>PF15219 TEX12: Testis-expressed 12
Probab=54.00 E-value=1.1e+02 Score=27.98 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 005942 500 EREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVE---KARQRFATERTRIVSTRL 558 (668)
Q Consensus 500 ErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE---~~Rq~L~~eR~~~~~~rl 558 (668)
-+||+-++.+--..--++-..-+.+.+|++-++ +|-+.|| ++++.++.+|++++.+.|
T Consensus 38 skEinlmls~yA~ilSEraavd~syi~eiD~lf-kEA~~lEnfLkqkre~LrQrlt~isntL 98 (100)
T PF15219_consen 38 SKEINLMLSTYAKILSERAAVDASYITEIDGLF-KEANALENFLKQKRECLRQRLTVISNTL 98 (100)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555566677776665 4555555 677788888999888765
No 75
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=53.76 E-value=70 Score=34.31 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005942 538 QVEKARQRFATERTRI 553 (668)
Q Consensus 538 ~LE~~Rq~L~~eR~~~ 553 (668)
++...++-++..|+..
T Consensus 156 ~Vq~~~~~~fq~rI~~ 171 (279)
T PF07271_consen 156 QVQPSFRPLFQQRICP 171 (279)
T ss_pred ccccccCccccccccc
Confidence 4444555555444333
No 76
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=50.85 E-value=78 Score=36.35 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 005942 514 QLKRLELKLKQFAE------VETLLMRECEQVEKARQRFATER 550 (668)
Q Consensus 514 QLkKLElKLk~fee------LE~~le~Er~~LE~~Rq~L~~eR 550 (668)
|++|-||||.++.| ||+.|..||+.--..+.+|-.||
T Consensus 527 q~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kkEk 569 (641)
T KOG3915|consen 527 QLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKKEK 569 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888877754 56666666655444444444444
No 77
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.79 E-value=90 Score=33.57 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 005942 484 GLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQ----FAEVETLLMRECEQVEKARQRFA 547 (668)
Q Consensus 484 aL~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~----feeLE~~le~Er~~LE~~Rq~L~ 547 (668)
.+-.||.|+-.|+..| ++-+..-.-|.+|++++..||+. ..+|+.-+++-|.+||+.|++|-
T Consensus 92 ~~~~aa~Rplel~e~E--kvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle 157 (338)
T KOG3647|consen 92 SLMSAAQRPLELLEVE--KVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLE 157 (338)
T ss_pred HHHHHHcCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677776666432 33344445567888888888875 46788888888999998888874
No 78
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.71 E-value=1.1e+02 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=41.1
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005942 512 NHQLKRLELKL-KQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG 559 (668)
Q Consensus 512 e~QLkKLElKL-k~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~ 559 (668)
|..||+.|.-| ..|++|-..-..|+..||..|.+|-.|+..|.+.+.+
T Consensus 354 E~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~ 402 (406)
T KOG3859|consen 354 EAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTA 402 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776 4799999999999999999999999999999887654
No 79
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.25 E-value=2.2e+02 Score=31.00 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 509 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVST 556 (668)
Q Consensus 509 ~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~ 556 (668)
.-++.++++++.+++.+++.|..+.+++..++....++..+|..+-.+
T Consensus 74 ~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 74 EELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999998888888877776544
No 80
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=48.88 E-value=15 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.643 Sum_probs=22.0
Q ss_pred CCCCCCCCCCcc-eeecccCcCcccChhh
Q 005942 242 HCNYCSQPIPAV-YYQSQKEVDVLLCPEC 269 (668)
Q Consensus 242 ~C~~C~~~~~~~-~y~~~k~~d~~LC~~C 269 (668)
.|..|++.+... .|+|.+|. +.+.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~-f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECC-FTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCC-CeEcCcc
Confidence 699999999988 99997764 7776666
No 81
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=48.79 E-value=9.3 Score=43.29 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
.-+||..|-. ++.....|+.+...||+.++|||++|....|++
T Consensus 470 ~~~wSp~e~s-~ircf~~y~~~fe~ia~l~~tktp~Q~~~fy~~ 512 (534)
T KOG1194|consen 470 NYGWSPEEKS-AIRCFHWYKDNFELIAELMATKTPEQIKKFYMD 512 (534)
T ss_pred cCCCCCcccc-cccCchhhccchHHHHHHhcCCCHHHHHHHhcC
Confidence 4589998877 667777889999999999999999999999886
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.65 E-value=1.6e+02 Score=34.11 Aligned_cols=40 Identities=8% Similarity=0.206 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 005942 480 AAKAGLAAAATKAKLFADHEEREIQRLSA--NIINHQLKRLELKLK 523 (668)
Q Consensus 480 Aa~~aL~aAA~kAk~lA~~EErEI~rLv~--~iIe~QLkKLElKLk 523 (668)
....+|.....|++.| |++|..|-. .++..+++++|.||+
T Consensus 66 VnqSALteqQ~kasEL----EKqLaaLrqElq~~saq~~dle~KIk 107 (475)
T PRK13729 66 VRQHATTEMQVTAAQM----QKQYEEIRRELDVLNKQRGDDQRRIE 107 (475)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445566666666665 677776622 233455566666555
No 83
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=48.11 E-value=29 Score=39.52 Aligned_cols=46 Identities=11% Similarity=0.380 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.-+.||++|..+|-.+.+.||.++.+|-+.+.-|+-...+..|...
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSW 231 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999888654
No 84
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=47.89 E-value=90 Score=34.69 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 005942 300 TWSDQETFLLLEGIEMYN 317 (668)
Q Consensus 300 ~WT~~Eel~LLeaIe~~g 317 (668)
=||-+|+ ||+|++..|
T Consensus 90 W~TTD~D--L~~A~~S~G 105 (498)
T KOG4849|consen 90 WYTTDAD--LLKALQSTG 105 (498)
T ss_pred EEeccHH--HHHHHHhhh
Confidence 4787775 569999877
No 85
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=47.75 E-value=18 Score=36.29 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-------CCHHHHHHHhCCCCHHHHHHHH
Q 005942 298 GETWSDQETFLLLEGIEMYN-------DNWNEIAEHVSTKSKAQCILHF 339 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-------~nW~~IAe~VgtKT~~eCi~hF 339 (668)
.+.||.+|+++|-+.|-.|+ .-.+.+++.++ ||...|-.+|
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~-rt~aac~fRw 52 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK-RTAAACGFRW 52 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh-hhHHHHHhHH
Confidence 36799999999988888885 34566667774 8999999999
No 86
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=47.69 E-value=1.5e+02 Score=29.26 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005942 527 EVETLLMRECEQVEKARQRFA 547 (668)
Q Consensus 527 eLE~~le~Er~~LE~~Rq~L~ 547 (668)
+||+-|+.||+.|-..|+.=|
T Consensus 129 ~lE~eLe~ar~kL~~lRk~~Y 149 (152)
T PF01608_consen 129 KLEKELEKARKKLAELRKAHY 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 566666666666666666544
No 87
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=46.98 E-value=22 Score=38.40 Aligned_cols=98 Identities=14% Similarity=0.308 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCC
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMY-NDN 319 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~-g~n 319 (668)
.+|.-|+..- ++..+-. .++.||.+|-.--|--+ .++.+|.. ..-+.||+++...|.+.=..- .--
T Consensus 26 ~~CADC~a~~--P~WaSwn-lGvFiC~~C~giHR~lg----~hiSkVkS------v~LD~W~~eqv~~m~~~GN~~an~~ 92 (287)
T KOG0703|consen 26 KVCADCGAKG--PRWASWN-LGVFICLRCAGIHRSLG----VHISKVKS------VTLDEWTDEQVDFMISMGNAKANSY 92 (287)
T ss_pred CcccccCCCC--CCeEEee-cCeEEEeeccccccccc----chhheeee------eeccccCHHHHHHHHHHcchhhhhh
Confidence 4788888763 3332222 46889999953322222 24556653 234789999987766532100 023
Q ss_pred HHH-HHHHhCCCCHHHHHHHHhhC-CCCCCCccC
Q 005942 320 WNE-IAEHVSTKSKAQCILHFVRL-PMEDGILEN 351 (668)
Q Consensus 320 W~~-IAe~VgtKT~~eCi~hFlqL-PIeD~fL~~ 351 (668)
|+. |.......++++-+.+||+- |....|+..
T Consensus 93 ~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~ 126 (287)
T KOG0703|consen 93 YEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDP 126 (287)
T ss_pred ccccCCccccCCChHHHHHHHHHHHHhhhhhccc
Confidence 443 34444456778889999984 555666654
No 88
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=46.87 E-value=35 Score=32.00 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=40.7
Q ss_pred CCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHH
Q 005942 243 CNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYNDNWNE 322 (668)
Q Consensus 243 C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g~nW~~ 322 (668)
|-.|+.++.-.+++|..|.-. -.|.|... .| .--..|++.+++..-+..||-.+
T Consensus 1 CPvCg~~l~vt~l~C~~C~t~-------i~G~F~l~----~~---------------~~L~~E~~~Fi~~Fi~~rGnlKe 54 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGTE-------IEGEFELP----WF---------------ARLSPEQLEFIKLFIKNRGNLKE 54 (113)
T ss_pred CCCCCCceEEEEEEcCCCCCE-------EEeeeccc----hh---------------hcCCHHHHHHHHHHHHhcCCHHH
Confidence 788998888788887776321 01222100 00 11235888888888888999999
Q ss_pred HHHHhC
Q 005942 323 IAEHVS 328 (668)
Q Consensus 323 IAe~Vg 328 (668)
|++.+|
T Consensus 55 ~e~~lg 60 (113)
T PF09862_consen 55 MEKELG 60 (113)
T ss_pred HHHHHC
Confidence 999999
No 89
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=46.60 E-value=20 Score=26.77 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCcee
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIR 286 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~ 286 (668)
..|..|... .+.|.|..| +..+|..|+..+ |+.|+++.
T Consensus 4 ~~C~~H~~~--~~~~~C~~C-~~~~C~~C~~~~-----H~~H~~~~ 41 (42)
T PF00643_consen 4 PKCPEHPEE--PLSLFCEDC-NEPLCSECTVSG-----HKGHKIVP 41 (42)
T ss_dssp SB-SSTTTS--BEEEEETTT-TEEEEHHHHHTS-----TTTSEEEE
T ss_pred ccCccCCcc--ceEEEecCC-CCccCccCCCCC-----CCCCEEeE
Confidence 467777652 367888887 458999999876 66676654
No 90
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=46.29 E-value=22 Score=40.55 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHH-HhCCCCHHHHHHHHhhCCCCCCCc
Q 005942 299 ETWSDQETFLLLEGIEMYNDNWNEIAE-HVSTKSKAQCILHFVRLPMEDGIL 349 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g~nW~~IAe-~VgtKT~~eCi~hFlqLPIeD~fL 349 (668)
..|+.-|-.++-||+++||.|+++|-. ++.=||-..++..|.-.--.|.|.
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmwKttdRYv 337 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMWKTTDRYV 337 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHHhhhhHHH
Confidence 579999999999999999999999965 555688888888776655555444
No 91
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.91 E-value=1.3e+02 Score=28.74 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 502 EIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVST 556 (668)
Q Consensus 502 EI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~ 556 (668)
++.+-+ ..++.|+++||.|++.+.++-..|++ .+=+.++.+|..+-+..++.
T Consensus 78 ~~~~~~-~~l~~~i~~Le~~l~~L~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 129 (134)
T cd04779 78 EVAQEV-QLVCDQIDGLEHRLKQLKPIASQTDR--AQRMKMTKELSQQVLTLIQS 129 (134)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCHHhHHHHHH
Confidence 344433 46899999999999999999888866 56678888888888877664
No 92
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=45.91 E-value=51 Score=25.28 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 304 QETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 304 ~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
+=+..||+.++.-+ -.|.+||+.+|- |+.+|..+.-+|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lgl-S~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGL-SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCc-CHHHHHHHHHHh
Confidence 34678999999877 899999999995 888888876543
No 93
>smart00595 MADF subfamily of SANT domain.
Probab=45.25 E-value=18 Score=31.09 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.4
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 319 NWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 319 nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
-|..||..+|. |.++|..+|-.|
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHH
Confidence 69999999997 999999999876
No 94
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=44.69 E-value=32 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCC
Q 005942 304 QETFLLLEGIEMYNDNWNEIAEHVST 329 (668)
Q Consensus 304 ~Eel~LLeaIe~~g~nW~~IAe~Vgt 329 (668)
-|-..|.++++.++||..+.|+.+|-
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~Lgi 30 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLLGI 30 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCC
Confidence 47788999999999999999999983
No 95
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=43.39 E-value=19 Score=40.75 Aligned_cols=60 Identities=25% Similarity=0.545 Sum_probs=38.6
Q ss_pred HHhhccCCCCCCCCCCCCc---ceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHH
Q 005942 234 IRERLSENHCNYCSQPIPA---VYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLL 309 (668)
Q Consensus 234 ~~~~~~~~~C~~C~~~~~~---~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~L 309 (668)
+|....-..|.-|+..-+. +.| .|.||.+|-..-|.-+.|-+ |+|-.+ + +.||..|...+
T Consensus 17 LRs~~~NKvCFDCgAknPtWaSVTY------GIFLCiDCSAvHRnLGVHiS--FVRSTn------L--DsWs~~qLR~M 79 (454)
T KOG0706|consen 17 LRSQSENKVCFDCGAKNPTWASVTY------GIFLCIDCSAVHRNLGVHIS--FVRSTN------L--DSWSWEQLRRM 79 (454)
T ss_pred HhcCCCCceecccCCCCCCceeecc------eEEEEEecchhhhccccceE--EEeecc------c--ccCCHHHHhHh
Confidence 4444444579999987543 333 68999999876666555544 666442 2 23999876554
No 96
>PF05928 Zea_mays_MuDR: Zea mays MURB-like protein (MuDR); InterPro: IPR009227 This family consists of several Zea mays (Maize) specific MURB-like proteins. The transposition of Mu elements underlying Mutator activity in maize requires a transcriptionally active MuDR element. Despite variation in MuDR copy number and RNA levels in Mutator lines, transposition events are consistently late in plant development, and Mu excision frequencies are similar [].
Probab=42.52 E-value=2.7e+02 Score=27.94 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005942 476 KVKAAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKR-------LELKLKQFAEVETLLMRECEQVEKARQRF 546 (668)
Q Consensus 476 ~vk~Aa~~aL~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkK-------LElKLk~feeLE~~le~Er~~LE~~Rq~L 546 (668)
.|.+|-++|++|+-+|.-.|-...|-+--.-.+.|+--|... +-.-||+|-.+-+.+.+-.++.-||.++|
T Consensus 12 ~v~aaraaavaa~earc~~~vaekea~a~v~fa~IaaekvEavk~ss~Vd~vD~KYhv~IknslryaIQEmRRQs~~l 89 (207)
T PF05928_consen 12 VVDAARAAAVAASEARCVVFVAEKEARAGVRFADIAAEKVEAVKISSKVDTVDMKYHVQIKNSLRYAIQEMRRQSQQL 89 (207)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455655555544443333333323333444333332 23457888888777766555555554444
No 97
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=41.98 E-value=29 Score=26.87 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 114 YMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 114 Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
|-.+|+.|+... ..|...| |..+.-..+ |.....+.|...-|+.-|+|-.
T Consensus 2 ~~~l~~~i~~~~-~~~~~~l~s~~~la~~~-~vs~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 2 AERLREDIVSGE-LRPGDKLPSERELAAQL-GVSRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred HHHHHHHHHcCC-CCCCCcCcCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEE
Confidence 566788777764 3467788 787765444 4457899999999999999964
No 98
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=41.26 E-value=63 Score=24.84 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
.|-.||..-.. ..+++++..+.+ |.+-..+.|=.+.|+..|||.|
T Consensus 3 ~R~~Il~~L~~---~~~~~~el~~~l-~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 3 TRLRILKLLSE---GPLTVSELAEEL-GLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHHTT---SSEEHHHHHHHH-TS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHh---CCCchhhHHHhc-cccchHHHHHHHHHHHCcCeeC
Confidence 57888888766 458999988776 5567889999999999999975
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=41.25 E-value=42 Score=42.33 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC------------CCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS------------TKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg------------tKT~~eCi~hFlqL 342 (668)
.+..||.+|+-.||-.+.+|| |+|++|-+.|. +||+.++..|...|
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 456799999999999999999 99999988773 79999988876554
No 100
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.12 E-value=1.2e+02 Score=26.35 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 005942 497 DHEEREIQRLSANIINHQLKRLELKLKQ--FAEVETLLMRECEQVEKARQRF------ATERTRIVS 555 (668)
Q Consensus 497 ~~EErEI~rLv~~iIe~QLkKLElKLk~--feeLE~~le~Er~~LE~~Rq~L------~~eR~~~~~ 555 (668)
++=|.+|+..|.+|-=.||.-=|+|=|. +..=..-...-|+.|++.-++| +.||++-+.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447789999998888888777776543 3333333344444555444443 455555443
No 101
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.04 E-value=3.1e+02 Score=33.69 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=11.1
Q ss_pred cChHHHHHHHHHHHHHHHh
Q 005942 414 VGPRVAAACAHASLAALSK 432 (668)
Q Consensus 414 V~P~VAaAAA~aAl~~l~~ 432 (668)
.||.-..+.|.+-++.+.+
T Consensus 415 tD~~eg~ala~aiLe~l~~ 433 (771)
T TIGR01069 415 TDPDEGSALAISILEYLLK 433 (771)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3455555666666666654
No 102
>PRK06474 hypothetical protein; Provisional
Probab=38.32 E-value=50 Score=32.96 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
.|-.|++.-..++. .+|++++-..+.+....++.|..+.|+..|||.-
T Consensus 12 ~R~~Il~~L~~~~~-~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~~ 59 (178)
T PRK06474 12 VRMKICQVLMRNKE-GLTPLELVKILKDVPQATLYRHLQTMVDSGILHV 59 (178)
T ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEE
Confidence 68889988877754 3999998776655556789999999999999995
No 103
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=37.99 E-value=4.1e+02 Score=26.25 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005942 509 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRL 558 (668)
Q Consensus 509 ~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl 558 (668)
..++-.=.|-+-.-+.-++||.+|+.-++.+|..++.+..+|+.++-.|.
T Consensus 62 ~~l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~~~~Eer~ 111 (149)
T PF15346_consen 62 EALEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERLRMEEERR 111 (149)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667777888999999999999999999999999888866543
No 104
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=37.75 E-value=18 Score=31.87 Aligned_cols=35 Identities=20% Similarity=0.544 Sum_probs=24.8
Q ss_pred CCCCCCCCCCcceeeccc---CcCcccChhhhhcCCCC
Q 005942 242 HCNYCSQPIPAVYYQSQK---EVDVLLCPECFHEGRFV 276 (668)
Q Consensus 242 ~C~~C~~~~~~~~y~~~k---~~d~~LC~~CF~~G~~~ 276 (668)
.|-.||.++......-.+ ..+-+-|.-||.+|.|.
T Consensus 2 ~CQSCGMPl~~~~~~Gte~dGs~s~~YC~yCy~~G~Ft 39 (81)
T PF12674_consen 2 FCQSCGMPLSKDEDFGTEADGSKSEDYCSYCYQNGEFT 39 (81)
T ss_pred cCCcCcCccCCccccccccCCCCchhHHHHHhcCCcee
Confidence 699999999875522221 23456899999999874
No 105
>PHA00442 host recBCD nuclease inhibitor
Probab=37.07 E-value=36 Score=28.04 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 005942 302 SDQETFLLLEGIEMYN-DNWNEIAEHV 327 (668)
Q Consensus 302 T~~Eel~LLeaIe~~g-~nW~~IAe~V 327 (668)
+-+-+...|++++.+| +||+-+.+.+
T Consensus 24 sLek~~~~L~~Lea~GVDNW~Gy~eA~ 50 (59)
T PHA00442 24 SLEKDNEFLKALRACGVDNWDGYMDAV 50 (59)
T ss_pred HHHHhhHHHHHHHHcCCcchhhHHHHH
Confidence 4456778999999999 9999988765
No 106
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=36.88 E-value=21 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=23.4
Q ss_pred cceeecccCc---CcccChhhhhcCCCCCCCCCCCceecCCC
Q 005942 252 AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVDPA 290 (668)
Q Consensus 252 ~~~y~~~k~~---d~~LC~~CF~~G~~~~~hss~df~~vd~~ 290 (668)
.+.|+|..|. ...+|.+||..+ .|..|+|..+...
T Consensus 11 q~~y~C~tC~~~~~~~iC~~CF~~~----~H~gH~~~~~~~~ 48 (71)
T PF02207_consen 11 QIFYRCLTCSLDESSGICEECFANS----CHEGHRVVYYRSS 48 (71)
T ss_dssp -EEEEETTTBSSTT-BBEHHHHCTS----GGGGSSEEEEE--
T ss_pred CEEEECccCCCCCCEEEchhhCCCC----CcCCCcEEEEEeC
Confidence 4678877764 378999999875 4677888776543
No 107
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=35.98 E-value=21 Score=33.09 Aligned_cols=62 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred ccCCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHH
Q 005942 238 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEG 312 (668)
Q Consensus 238 ~~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLea 312 (668)
..-..|.-|+..- ..|.+.. -.+.+|..|..--+.-+.| ..+|.. ..-+.||.+|...|.++
T Consensus 11 ~~N~~CaDCg~~~--p~w~s~~-~GiflC~~Cag~HR~lg~~----is~VkS------i~~d~w~~~ev~~~~~~ 72 (116)
T PF01412_consen 11 PGNKVCADCGAPN--PTWASLN-YGIFLCLECAGIHRSLGVH----ISRVKS------ITMDNWSPEEVQRMREG 72 (116)
T ss_dssp TTCTB-TTT-SBS----EEETT-TTEEE-HHHHHHHHHHTTT----T--EEE------TTTS---HHHHHHHHHS
T ss_pred cCcCcCCCCCCCC--CCEEEee-cChhhhHHHHHHHHHhccc----chhccc------cccCCCCHHHHHHHHHH
Confidence 3445799998543 4566655 4689999998654432222 223332 12346999988777554
No 108
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=35.62 E-value=28 Score=30.09 Aligned_cols=56 Identities=23% Similarity=0.448 Sum_probs=36.4
Q ss_pred CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhh--ccCCCChhHHHHHHHhhhhhc
Q 005942 88 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG--LVDGVSPEDLTRIFRFLNHWG 161 (668)
Q Consensus 88 ~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~--~L~gddv~~i~RVH~FLE~WG 161 (668)
.-|++-||.+|-.||.- .|- |+--++.++-.+-+. .-+|.|..-|--|-.||++||
T Consensus 22 ~pVse~erd~LAhYFQl----------------Lit--RLmnneeIsEeaQ~EMA~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 22 KPVSEAERDALAHYFQL----------------LIT--RLMNNEEISEEAQQEMASEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred cCcchhhhhHHHHHHHH----------------HHH--HHhccHhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 34777888888777731 222 333355666544333 346777777888999999999
No 109
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=35.54 E-value=43 Score=36.77 Aligned_cols=99 Identities=17% Similarity=0.334 Sum_probs=52.3
Q ss_pred cCCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 005942 239 SENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYND 318 (668)
Q Consensus 239 ~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g~ 318 (668)
.-..|.-|+..- -.|.-|. -.+.||.+|-.--|.-+.| ..+|.. ..-+.||.+|..+|.-+=...-.
T Consensus 19 ~Nk~CaDCga~~-P~W~S~n--lGvfiCi~CagvHRsLGvh----iS~VKS------itLD~wt~~~l~~m~~gGN~~a~ 85 (319)
T COG5347 19 SNKKCADCGAPN-PTWASVN--LGVFLCIDCAGVHRSLGVH----ISKVKS------LTLDNWTEEELRRMEVGGNSNAN 85 (319)
T ss_pred ccCccccCCCCC-CceEecc--cCeEEEeecchhhhccccc----eeeeee------eecccCCHHHHHHHHHhcchhhh
Confidence 446799998876 3344332 4689999997544433332 233332 23468999887777652111112
Q ss_pred CHHHHHHH----hC--CCCHHHHHHHHhh-CCCCCCCcc
Q 005942 319 NWNEIAEH----VS--TKSKAQCILHFVR-LPMEDGILE 350 (668)
Q Consensus 319 nW~~IAe~----Vg--tKT~~eCi~hFlq-LPIeD~fL~ 350 (668)
.|-+---- +. .+.-...+.+|++ ++.+-.|.+
T Consensus 86 ~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~ 124 (319)
T COG5347 86 RFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFID 124 (319)
T ss_pred hHhccCCCcccccccccccCHHHHHHHHHHHHHhhhccc
Confidence 22221111 11 2444667777765 555544443
No 110
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=35.41 E-value=41 Score=30.98 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CC
Q 005942 241 NHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN-DN 319 (668)
Q Consensus 241 ~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g-~n 319 (668)
..|.-|+.. .+.+.+.. ..+.+|..|-.--+....| ..+|.. ..-+.||.+|... |+ ..| ..
T Consensus 4 ~~CaDC~~~--~p~w~s~~-~GifvC~~CsgiHR~lg~h----is~VkS------l~md~w~~~~i~~-~~---~~GN~~ 66 (112)
T smart00105 4 KKCFDCGAP--NPTWASVN-LGVFLCIECSGIHRSLGVH----ISKVRS------LTLDTWTEEELRL-LQ---KGGNEN 66 (112)
T ss_pred CcccCCCCC--CCCcEEec-cceeEhHHhHHHHHhcCCC----cCeeee------cccCCCCHHHHHH-HH---HhhhHH
Confidence 368888874 34454443 4688999997654433322 222332 1235899977543 33 223 22
Q ss_pred HHHHHHHhC--------CCCHHHHHHHHhhC-CCCCCCc
Q 005942 320 WNEIAEHVS--------TKSKAQCILHFVRL-PMEDGIL 349 (668)
Q Consensus 320 W~~IAe~Vg--------tKT~~eCi~hFlqL-PIeD~fL 349 (668)
++++=+.-. ..+..+-+..|++- |.+..|.
T Consensus 67 ~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~ 105 (112)
T smart00105 67 ANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKLFV 105 (112)
T ss_pred HHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhhcc
Confidence 222222111 12246777888773 5555554
No 111
>PRK00846 hypothetical protein; Provisional
Probab=35.33 E-value=3.1e+02 Score=24.13 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005942 506 LSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLGP 560 (668)
Q Consensus 506 Lv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~~ 560 (668)
|-..-++..+..||.||.|-+++=..|...--. .+..-..+.++++.+..||..
T Consensus 6 ~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~-qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 6 LRDQALEARLVELETRLSFQEQALTELSEALAD-ARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 444567788999999999977654433332211 111112334455667777773
No 112
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=34.98 E-value=1e+02 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 529 ETLLMRECEQVEKARQRFATERTRIV 554 (668)
Q Consensus 529 E~~le~Er~~LE~~Rq~L~~eR~~~~ 554 (668)
+.-++.+|.+.|+.+|+.+.+...|+
T Consensus 86 ~~~~e~~r~~fekekqq~~~~~t~~L 111 (228)
T PRK06800 86 MKEIEAARQQFQKEQQETAYEWTELL 111 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444
No 113
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=34.72 E-value=22 Score=31.27 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=18.2
Q ss_pred ccCCCCCCCCCCCC-----cceeecccCcCcccChhhhh----cCCCCCCCCCCCceecCC
Q 005942 238 LSENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFH----EGRFVTGHSSLDYIRVDP 289 (668)
Q Consensus 238 ~~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~----~G~~~~~hss~df~~vd~ 289 (668)
++...|..|+.++. .++..|.+| .|-+|-.||. +|+-..-.-...|.+...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC-~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHEC-AFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred cCCcccccccCccccCCCCCEEEEEccc-CCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 44568999998875 378889888 6889999995 333222223456766654
No 114
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=34.46 E-value=1.1e+02 Score=25.85 Aligned_cols=44 Identities=11% Similarity=0.382 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 511 INHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVS 555 (668)
Q Consensus 511 Ie~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~ 555 (668)
|+..-++|+.|+.|+|.|-++ ++--.+|+...++|..-|..|+.
T Consensus 13 I~~~K~~l~ik~~H~Ekl~ki-tK~p~El~~i~~kl~~~R~~FLn 56 (62)
T PF06034_consen 13 INQMKRQLTIKSQHWEKLKKI-TKNPKELQEIEKKLQELRQNFLN 56 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 344456799999999998654 45556677777778877877764
No 115
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=34.29 E-value=27 Score=44.21 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHH
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIA 324 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IA 324 (668)
.+.+|..+|+..||-||-+|| |+|+.|-
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir 1160 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIR 1160 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhc
Confidence 578999999999999999999 9999974
No 116
>PLN02436 cellulose synthase A
Probab=33.89 E-value=53 Score=41.29 Aligned_cols=50 Identities=20% Similarity=0.470 Sum_probs=35.1
Q ss_pred ccCCCCCCCCCCCC-----cceeecccCcCcccChhhhhcCCC----CCCCCCCCceecC
Q 005942 238 LSENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFHEGRF----VTGHSSLDYIRVD 288 (668)
Q Consensus 238 ~~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~~G~~----~~~hss~df~~vd 288 (668)
++...|..||.++. .+++.|.+| .|-+|..||.-.+. ...+....|.+..
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C-~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNEC-AFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccC-CCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34558999999875 378999999 68999999963332 2233456676654
No 117
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=33.71 E-value=75 Score=30.36 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHH---hCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 112 EKYMECRNHIVAKYM---DNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 112 e~Y~~~RN~iI~~yr---~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
-+|..|.|.|...=. ..|.+.|--+---....|++.+.+.|.+.-||+=|+|.-.
T Consensus 11 PIY~QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpnTv~raY~eLE~eG~i~t~ 68 (125)
T COG1725 11 PIYEQIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPNTVQRAYQELEREGIVETK 68 (125)
T ss_pred CHHHHHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 489999999987765 6778777543222223477899999999999999999873
No 118
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=33.71 E-value=58 Score=25.53 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 120 HIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 120 ~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
.|++.....+. .+|+++.-+.+ |.+...+.|+..-|+++|+|..
T Consensus 7 ~iL~~l~~~~~-~~t~~eia~~~-gl~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 7 RILEALAESGG-PLTLSEIARAL-GLPKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHCHHCTBS-CEEHHHHHHHH-TS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCC-CCCHHHHHHHH-CcCHHHHHHHHHHHHHCcCeec
Confidence 36666666654 48999987665 5578899999999999999865
No 119
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=32.63 E-value=87 Score=24.72 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=33.1
Q ss_pred HhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccccCC
Q 005942 126 MDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAV 169 (668)
Q Consensus 126 r~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYqvdp 169 (668)
..+|...+|+++..+.+ |.+-.++.|+.+=|+++|||--..++
T Consensus 15 ~~~~~~~~t~~~la~~l-~~~~~~vs~~v~~L~~~Glv~r~~~~ 57 (62)
T PF12802_consen 15 ARHPGEELTQSELAERL-GISKSTVSRIVKRLEKKGLVERERDP 57 (62)
T ss_dssp HHSTTSGEEHHHHHHHH-TS-HHHHHHHHHHHHHTTSEEEEE-S
T ss_pred HHCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 45666679999976665 44678999999999999999776554
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.19 E-value=2.3e+02 Score=30.44 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005942 500 EREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG 559 (668)
Q Consensus 500 ErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~ 559 (668)
+.+|++|.+.|=++ .+|++.+=+.+++++.-|.+=..+++..+++ +.+|..+|..|.+
T Consensus 51 q~ei~~L~~qi~~~-~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~-I~~r~~~l~~raR 108 (265)
T COG3883 51 QNEIESLDNQIEEI-QSKIDELQKEIDQSKAEIKKLQKEIAELKEN-IVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 67788888776444 3555555566666666665555555544444 3455666666655
No 121
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.18 E-value=4.7e+02 Score=32.26 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=12.9
Q ss_pred cChHHHHHHHHHHHHHHHhh
Q 005942 414 VGPRVAAACAHASLAALSKQ 433 (668)
Q Consensus 414 V~P~VAaAAA~aAl~~l~~~ 433 (668)
.||.-.++.+.+.++.+.+.
T Consensus 420 tDp~eg~ala~aile~l~~~ 439 (782)
T PRK00409 420 TDPDEGAALAISILEYLRKR 439 (782)
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 45666666677777776554
No 122
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=32.15 E-value=20 Score=27.51 Aligned_cols=30 Identities=27% Similarity=0.723 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCcc-eeecccCcCcccChhhhh
Q 005942 241 NHCNYCSQPIPAV-YYQSQKEVDVLLCPECFH 271 (668)
Q Consensus 241 ~~C~~C~~~~~~~-~y~~~k~~d~~LC~~CF~ 271 (668)
.+|++|++.-..+ .+.. ...+..+|.+|..
T Consensus 2 ~~CSFCgr~~~~v~~li~-g~~~~~IC~~Cv~ 32 (41)
T PF06689_consen 2 KRCSFCGRPESEVGRLIS-GPNGAYICDECVE 32 (41)
T ss_dssp -B-TTT--BTTTSSSEEE-ES-SEEEEHHHHH
T ss_pred CCccCCCCCHHHHhceec-CCCCcEECHHHHH
Confidence 5799999988764 2332 2225788999864
No 123
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=6.3e+02 Score=31.46 Aligned_cols=63 Identities=24% Similarity=0.410 Sum_probs=36.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 493 KLFADHEEREIQRLSANIINHQLKRLELKLKQFA--------------------EVETLLMRECEQVEKARQRFATERTR 552 (668)
Q Consensus 493 k~lA~~EErEI~rLv~~iIe~QLkKLElKLk~fe--------------------eLE~~le~Er~~LE~~Rq~L~~eR~~ 552 (668)
++.....|||-+|+...+=..+-|-++.++.++. +.|+++.++.++|++.|+.| ..|++
T Consensus 609 Rl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kEl-q~rL~ 687 (988)
T KOG2072|consen 609 RLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKEL-QSRLQ 687 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444555666666666554333333333322222 24678999999999998876 45665
Q ss_pred HHHH
Q 005942 553 IVST 556 (668)
Q Consensus 553 ~~~~ 556 (668)
....
T Consensus 688 ~q~K 691 (988)
T KOG2072|consen 688 YQEK 691 (988)
T ss_pred HHHh
Confidence 5443
No 124
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=31.31 E-value=1.2e+02 Score=29.55 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=39.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHH
Q 005942 492 AKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRE-CEQVEKARQRFA 547 (668)
Q Consensus 492 Ak~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~E-r~~LE~~Rq~L~ 547 (668)
+.++++.+..+-..+....++..+.+|..||..|..|+..-... ...++..|..+.
T Consensus 61 ~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~~kl~~~~~~~~~~~v~~aR~~vv 117 (142)
T PF07956_consen 61 KSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEERKKLRELKEEKNSEEVEKARSAVV 117 (142)
T ss_pred HhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 33444445566678899999999999999999887776655432 335566666554
No 125
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=31.28 E-value=2.6e+02 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Q 005942 511 INHQLKRLELKLKQFAEVETLLMRECEQVE----KARQRFATERTRIVSTRLG 559 (668)
Q Consensus 511 Ie~QLkKLElKLk~feeLE~~le~Er~~LE----~~Rq~L~~eR~~~~~~rl~ 559 (668)
++.++++++.||.+.++=++.|+.-...|+ +.|-.-+.+|-.++..-+-
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lEsi~~ 58 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILESIFP 58 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 456677777777777777777777777774 6777888888888776554
No 126
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=30.69 E-value=2.8e+02 Score=28.44 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005942 534 RECEQVEKARQRFATERTRI 553 (668)
Q Consensus 534 ~Er~~LE~~Rq~L~~eR~~~ 553 (668)
.|+..|++.|++|+++|.+|
T Consensus 59 ~eqQ~l~~er~~l~~er~~~ 78 (228)
T PRK06800 59 QEQQKLERERQQLLADREQF 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555444
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=30.50 E-value=2.1e+02 Score=33.86 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005942 497 DHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRL 558 (668)
Q Consensus 497 ~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl 558 (668)
..|-+|-+|+-..-..-|-.|+...-+-++.| .+||.+||++||.| ||.+|-..||
T Consensus 620 ~Re~eer~RirE~rerEqR~~a~~ERee~eRl----~~erlrle~qRQrL--ERErmErERL 675 (940)
T KOG4661|consen 620 RREAEERQRIREEREREQRRKAAVEREELERL----KAERLRLERQRQRL--ERERMERERL 675 (940)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHH
No 128
>PRK00106 hypothetical protein; Provisional
Probab=29.71 E-value=6.6e+02 Score=29.71 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.9
Q ss_pred hHHHHHHHHhhc
Q 005942 403 VMALVAFLASAV 414 (668)
Q Consensus 403 VMS~VAFLas~V 414 (668)
++-+|+-|.++|
T Consensus 5 ~~~~~~~~~~~~ 16 (535)
T PRK00106 5 IILVVSALIGLV 16 (535)
T ss_pred HHHHHHHHHHHH
Confidence 344455555554
No 129
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.12 E-value=1.3e+02 Score=34.65 Aligned_cols=7 Identities=14% Similarity=0.130 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 005942 614 RPQQMFP 620 (668)
Q Consensus 614 ~~~~~~~ 620 (668)
+++.|.|
T Consensus 458 ~~~pppP 464 (483)
T KOG2236|consen 458 QQSPPPP 464 (483)
T ss_pred ccCCCCC
Confidence 3444444
No 130
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=28.98 E-value=1e+02 Score=24.20 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 120 HIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 120 ~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
.|+......+ +++.+..+.+ |.+...+.|+..-|+++|+|+.-
T Consensus 11 ~il~~l~~~~---~~~~ei~~~~-~i~~~~i~~~l~~L~~~g~i~~~ 53 (78)
T cd00090 11 RILRLLLEGP---LTVSELAERL-GLSQSTVSRHLKKLEEAGLVESR 53 (78)
T ss_pred HHHHHHHHCC---cCHHHHHHHH-CcCHhHHHHHHHHHHHCCCeEEE
Confidence 4444434444 8888877665 44678999999999999999974
No 131
>PLN02189 cellulose synthase
Probab=28.65 E-value=72 Score=40.09 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=35.7
Q ss_pred ccCCCCCCCCCCCC-----cceeecccCcCcccChhhhhcCCC----CCCCCCCCceecCC
Q 005942 238 LSENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFHEGRF----VTGHSSLDYIRVDP 289 (668)
Q Consensus 238 ~~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~~G~~----~~~hss~df~~vd~ 289 (668)
+....|..|+.++. .++..|.+| .|-+|..||.-.+. ...+....|.+.+.
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C-~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kg 91 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYEYERREGTQNCPQCKTRYKRLKG 91 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccC-CCccccchhhhhhhcCCccCcccCCchhhccC
Confidence 34558999999875 378899998 68999999963332 23334567776653
No 132
>PLN02400 cellulose synthase
Probab=28.65 E-value=76 Score=40.05 Aligned_cols=51 Identities=16% Similarity=0.383 Sum_probs=36.1
Q ss_pred ccCCCCCCCCCCCC-----cceeecccCcCcccChhhhhcC----CCCCCCCCCCceecCC
Q 005942 238 LSENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFHEG----RFVTGHSSLDYIRVDP 289 (668)
Q Consensus 238 ~~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~~G----~~~~~hss~df~~vd~ 289 (668)
++...|..||.++. .+++.|.+| .|-+|-.||.-. +-...+....|.+.+.
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eC-aFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kg 93 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNEC-AFPVCRPCYEYERKDGTQCCPQCKTRYRRHKG 93 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccC-CCccccchhheecccCCccCcccCCccccccC
Confidence 44568999999975 378999999 688999999632 2223334577877653
No 133
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=28.64 E-value=78 Score=31.87 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.2
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 99 PHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 99 PefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
|.|=+-+..+.+..+|-.+|+.|+.- +..|+..|+-.+--..+ |+.-..+..-..-|+..|||-.
T Consensus 2 ~~~~~~~~~~~~e~v~~~l~~~I~~g-~l~pG~~L~e~~La~~l-gVSRtpVREAL~~L~~eGLV~~ 66 (221)
T PRK11414 2 PGTEKTQHISLTLQVENDLKHQLSIG-ALKPGARLITKNLAEQL-GMSITPVREALLRLVSVNALSV 66 (221)
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHhC-CCCCCCccCHHHHHHHH-CCCchhHHHHHHHHHHCCCEEe
Confidence 34433334567788999999999977 68899999876643333 5556778889999999999976
No 134
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=28.47 E-value=2.4e+02 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005942 526 AEVETLLMRECEQVEKARQRFAT 548 (668)
Q Consensus 526 eeLE~~le~Er~~LE~~Rq~L~~ 548 (668)
.|.|++|+.-+.+||..|...+.
T Consensus 33 ~EY~kiLk~r~~~lEevKrk~LK 55 (56)
T PF08112_consen 33 MEYEKILKQRRKELEEVKRKALK 55 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888888888889888877654
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.44 E-value=3.6e+02 Score=31.37 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 005942 512 NHQLKRLE 519 (668)
Q Consensus 512 e~QLkKLE 519 (668)
|.||.+|+
T Consensus 82 EKqLaaLr 89 (475)
T PRK13729 82 QKQYEEIR 89 (475)
T ss_pred HHHHHHHH
Confidence 44444444
No 136
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.22 E-value=5.7e+02 Score=24.60 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 500 EREIQRLSANIINHQLKRLELKLK-----QFAEVETLLMRECEQVEKARQRFATERTRIVS 555 (668)
Q Consensus 500 ErEI~rLv~~iIe~QLkKLElKLk-----~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~ 555 (668)
|+|++.| +-|.||+....+ +.+.+-.-++.||..++..|.+|..+..++-.
T Consensus 33 d~el~QL-----efq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 33 DQELQQL-----EFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666665 567788888875 88888888999999888888888877766543
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.90 E-value=6.1e+02 Score=26.27 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005942 506 LSANIINHQLKRLELKLKQFAEVETLLMRECEQVE 540 (668)
Q Consensus 506 Lv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE 540 (668)
.+..-|+.+-+.++.+-+.++++...++..+..|+
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888777777777665
No 138
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.31 E-value=2.7e+02 Score=23.78 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 005942 544 QRFATERTRIVSTRLG 559 (668)
Q Consensus 544 q~L~~eR~~~~~~rl~ 559 (668)
..+...|+..+..||.
T Consensus 44 ne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 44 NEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3334444444555554
No 139
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.84 E-value=94 Score=28.35 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 115 MECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 115 ~~~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
-.-|..|++....++. .+|+.+.-..| ...+..+|.|...+|+.=|||.=
T Consensus 7 T~~R~~Il~~l~~~~~-~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 7 TPQRLAILELLKESPE-HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHHHHSS-SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHcCCC-CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 4568899999988887 99999975433 23447899999999999999976
No 140
>PLN02806 complex I subunit
Probab=25.59 E-value=1.2e+02 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005942 513 HQLKRLELKLKQFAEVETLLMRECEQV 539 (668)
Q Consensus 513 ~QLkKLElKLk~feeLE~~le~Er~~L 539 (668)
.|+-|.|.||+ ++||+.|.++|..-
T Consensus 47 n~l~~we~kL~--edldk~L~~~r~an 71 (81)
T PLN02806 47 NQLVKWEVKLK--EDLDKMLAKARAAN 71 (81)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 45667777777 68999998887543
No 141
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=25.48 E-value=3.7e+02 Score=29.61 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005942 485 LAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEK 541 (668)
Q Consensus 485 L~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~ 541 (668)
+..++.+++.|.+.+|..-+.+ .-.+.++++|+-|+..+++.+..++.|.+.+|.
T Consensus 8 ~~~~~~~~r~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 8 REEIVAEIRSLLDKAEKLEKEL--TAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666665332222211 223345667888888888888777776666655
No 142
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=25.43 E-value=2.7e+02 Score=27.40 Aligned_cols=38 Identities=18% Similarity=0.494 Sum_probs=26.9
Q ss_pred CCCCCCCCCCcc-eeecccCcCcccChhhhhcCCCCCCC
Q 005942 242 HCNYCSQPIPAV-YYQSQKEVDVLLCPECFHEGRFVTGH 279 (668)
Q Consensus 242 ~C~~C~~~~~~~-~y~~~k~~d~~LC~~CF~~G~~~~~h 279 (668)
.|-.||..+... +..-.+-....+|..|+.-|+.+..+
T Consensus 2 ~CEiCG~~i~~~~~~v~iega~l~vC~~C~k~G~~~~~~ 40 (154)
T TIGR00270 2 NCEICGRKIKGKGFKIVIEGSEMTVCGECRKFGKEIIKK 40 (154)
T ss_pred ccccCCCccCCCCeEEEEcCeEEehhhhHHhcCCccccC
Confidence 499999998764 43334445688999999878754433
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.39 E-value=7.7e+02 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 523 KQFAEVETLLMRECEQVEKARQRFATERTRIVST 556 (668)
Q Consensus 523 k~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~ 556 (668)
++.+++...+..-++.+....+.+...|..++++
T Consensus 119 ~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~ 152 (302)
T PF10186_consen 119 EQLEELQNELEERKQRLSQLQSQLARRRRQLIQE 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454445544555555555555566665555
No 144
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=25.34 E-value=1.1e+02 Score=29.38 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 303 DQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 303 ~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
++-+..||+.++.-+ -.|.+||+.+|. |+..|..++-+|
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lgl-S~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFGV-SPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 357889999999887 899999999985 899999999887
No 145
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=25.24 E-value=1.2e+03 Score=27.89 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=9.0
Q ss_pred HHHHcCCCHHHHHHH
Q 005942 312 GIEMYNDNWNEIAEH 326 (668)
Q Consensus 312 aIe~~g~nW~~IAe~ 326 (668)
+++.-+-+|.+|..-
T Consensus 322 ~L~~a~~~~~~i~~V 336 (653)
T PTZ00009 322 VLKDAGMDKRSVHEV 336 (653)
T ss_pred HHHHcCCCHHHCcEE
Confidence 444456678877653
No 146
>COG3418 Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=3.3e+02 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 005942 517 RLELKLKQFAEVETLLMRECEQVEK 541 (668)
Q Consensus 517 KLElKLk~feeLE~~le~Er~~LE~ 541 (668)
-++.-++++++|+++|+.|+..|++
T Consensus 8 ll~q~~~~l~~L~~vldqE~q~L~~ 32 (146)
T COG3418 8 LLDQQLNVLNSLKTVLDQEQQALSS 32 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556678899999999999988874
No 147
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=25.11 E-value=40 Score=27.16 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCCCCCCCCCcceeecccCcCcccChhhhhcC
Q 005942 242 HCNYCSQPIPAVYYQSQKEVDVLLCPECFHEG 273 (668)
Q Consensus 242 ~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G 273 (668)
.|..|++.++-..- .+-.|-.+|.+||..-
T Consensus 1 ~C~iCg~kigl~~~--~k~~DG~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKIKDGYICKDCLKKL 30 (51)
T ss_pred CCCccccccccccc--eeccCccchHHHHHHh
Confidence 48999999876431 2234557999999654
No 148
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=24.81 E-value=4.7e+02 Score=25.22 Aligned_cols=50 Identities=26% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 502 EIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVS 555 (668)
Q Consensus 502 EI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~ 555 (668)
-|..|...+-+++++-||.+++.|+.+.. ||++-|..+...+.+|..-+.
T Consensus 4 n~r~l~~~~~e~~~e~lee~~ek~eq~~~----~r~~e~~~~~~~i~e~~~~~~ 53 (128)
T COG2916 4 NIRTLRAMARETYLELLEEMLEKEEQVVQ----ERQEEEAAAIAEIEERQEKYG 53 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999988776654 444445555665666655554
No 149
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.70 E-value=89 Score=39.45 Aligned_cols=51 Identities=14% Similarity=0.363 Sum_probs=36.5
Q ss_pred ccCCCCCCCCCCCC-----cceeecccCcCcccChhhhh----cCCCCCCCCCCCceecCC
Q 005942 238 LSENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFH----EGRFVTGHSSLDYIRVDP 289 (668)
Q Consensus 238 ~~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~----~G~~~~~hss~df~~vd~ 289 (668)
++...|..||.++. .+++.|.+| .|-+|-.||. +|+-...+....|.|.+.
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC-~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kg 74 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVC-AFPVCRPCYEYERKDGNQSCPQCKTKYKRHKG 74 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccC-CCccccchhhhhhhcCCccCCccCCchhhhcC
Confidence 34558999999875 378999999 6899999995 333333344667776653
No 150
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=24.68 E-value=4.4e+02 Score=26.00 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 499 EEREIQRLSANIINHQL---KRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVS 555 (668)
Q Consensus 499 EErEI~rLv~~iIe~QL---kKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~ 555 (668)
....+-++-..+.+.+. .+++.|+..+++--+-++.|+++||++.+..-.+|.....
T Consensus 49 iK~~l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~ 108 (157)
T PF14235_consen 49 IKQHLAELAADLLELELAARAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALH 108 (157)
T ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 34444455555666653 7778888888887778888888888888887777766544
No 151
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.36 E-value=3.1e+02 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005942 496 ADHEEREIQRLSANIINHQLKRLELKLKQF 525 (668)
Q Consensus 496 A~~EErEI~rLv~~iIe~QLkKLElKLk~f 525 (668)
-++=|-+|+..|-+|-=.||+-=|+|-+.-
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588999999999999988888887643
No 152
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=23.95 E-value=7.9e+02 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005942 512 NHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTR 557 (668)
Q Consensus 512 e~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~r 557 (668)
+.+++|-|..++++.+|=+..-+||.+...+=|+|+.+-..+....
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4567888888999999999999999998888888887776665544
No 153
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=23.92 E-value=1.2e+02 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-------C--CHHHHHHHhC-CCCHHHHHHHHhh
Q 005942 299 ETWSDQETFLLLEGIEMYN-------D--NWNEIAEHVS-TKSKAQCILHFVR 341 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-------~--nW~~IAe~Vg-tKT~~eCi~hFlq 341 (668)
...|.+|+..|++.|..+. | =|.+.++.-. .+|-+--+.||++
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K 55 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLK 55 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4689999999999996552 3 3999999766 6888899999986
No 154
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.46 E-value=4.7e+02 Score=26.41 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 005942 523 KQFAEVETLLMRECEQVE 540 (668)
Q Consensus 523 k~feeLE~~le~Er~~LE 540 (668)
.-|+.+-+-+++|+++..
T Consensus 47 AefeN~rkR~~ke~~~~~ 64 (178)
T PRK14161 47 AEIDNTRKRLEKARDEAK 64 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444555554443
No 155
>PRK00295 hypothetical protein; Provisional
Probab=23.12 E-value=4.1e+02 Score=22.53 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005942 511 INHQLKRLELKLKQFAEV----ETLLMRECEQVEKARQRFATERTRIVSTRLGP 560 (668)
Q Consensus 511 Ie~QLkKLElKLk~feeL----E~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~~ 560 (668)
++..+..||.||.|-+++ -..+-+-.+++.+. ..+++.+.+|+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L-----~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERL-----QLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 355688999999998754 33333333333222 3445566666663
No 156
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=23.00 E-value=90 Score=31.70 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 108 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 108 ~ktpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
+.+..+|-.+|+.|+.- +..|++.| +-.+--..+ |+.-..+..-..-|+..|||-..
T Consensus 6 ~~~~~v~~~l~~~I~~g-~l~pG~~LpsE~~La~~l-gVSRtpVREAL~~Le~eGlV~~~ 63 (235)
T TIGR02812 6 SPAGFAEEYIVESIWNN-RFPPGSILPAERELSELI-GVTRTTLREVLQRLARDGWLTIQ 63 (235)
T ss_pred hhHHHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 45678999999999987 68899999 676644443 55567899999999999999863
No 157
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.33 E-value=8.7e+02 Score=27.61 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005942 520 LKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG 559 (668)
Q Consensus 520 lKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~ 559 (668)
.+=.+.|+||.+++. |++.|+.|-+||.+-+.-++..|.
T Consensus 210 yt~~YmE~MeqvFe~-CQ~fE~~Rl~Ffkeil~~v~~hld 248 (472)
T KOG2856|consen 210 YTPVYMEDMEQVFEQ-CQQFEEKRLQFFKEILLKVQRHLD 248 (472)
T ss_pred cCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678888888865 888888888888887776666554
No 158
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.24 E-value=3.7e+02 Score=22.73 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCC
Q 005942 511 INHQLKRLELKLKQFAEVETLLMRECEQVEKARQR--FATERTRIVSTRLGP 560 (668)
Q Consensus 511 Ie~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~--L~~eR~~~~~~rl~~ 560 (668)
++..+..||.||.|.++.=.-|.. .+-++.++ -+..+++.+.+|+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~---~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND---VVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999998765333322 12222222 234456667777774
No 159
>PRK04325 hypothetical protein; Provisional
Probab=22.00 E-value=5.2e+02 Score=22.31 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005942 511 INHQLKRLELKLKQFAEVE----TLLMRECEQVEKARQRFATERTRIVSTRLGP 560 (668)
Q Consensus 511 Ie~QLkKLElKLk~feeLE----~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~~ 560 (668)
++..+..||.||.|-++.= ..+-+-.+++.+ +..+++.+..|+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~-----L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDL-----LQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4556889999999986543 333222222222 33456677777763
No 160
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=21.55 E-value=99 Score=33.99 Aligned_cols=69 Identities=13% Similarity=0.351 Sum_probs=51.6
Q ss_pred CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 005942 88 DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 164 (668)
Q Consensus 88 ~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLIN 164 (668)
.=+++=|++-.--+ .-.|.-|+.+.--||..+.. ....+|.++|++++. .|..-.-+|+.|.-.-|.|-
T Consensus 361 ~llS~dEq~LC~~l------~i~PkpyL~LK~~~is~~l~-t~g~f~K~d~~~Lf~-id~~ka~~~YdfF~~~~Wi~ 429 (432)
T COG5114 361 ALLSDDEQRLCETL------NISPKPYLELKKEVISCFLR-TRGEFTKEDFNRLFG-IDLGKADGLYDFFLERGWIH 429 (432)
T ss_pred hhhcchHHHHHHHh------CCCCccHHHHHHHHHHHHHH-hCCCccHHHHHHHhC-cCcchhhHHHHHHHhccccC
Confidence 34555566543222 34589999999999999865 456899999999884 56788899999988777663
No 161
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.14 E-value=1.1e+02 Score=38.44 Aligned_cols=50 Identities=14% Similarity=0.390 Sum_probs=35.4
Q ss_pred cCCCCCCCCCCCC-----cceeecccCcCcccChhhhhc----CCCCCCCCCCCceecCC
Q 005942 239 SENHCNYCSQPIP-----AVYYQSQKEVDVLLCPECFHE----GRFVTGHSSLDYIRVDP 289 (668)
Q Consensus 239 ~~~~C~~C~~~~~-----~~~y~~~k~~d~~LC~~CF~~----G~~~~~hss~df~~vd~ 289 (668)
....|..||.++. .+++.|.+| .|-+|..||.- |+-...+....|.+...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC-~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~ 72 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVC-GFPVCKPCYEYERSEGNQCCPQCNTRYKRHKG 72 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccC-CCccccchhhhhhhcCCccCCccCCchhhhcC
Confidence 4457999999875 378999999 68999999953 33333344567776553
No 162
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=21.04 E-value=2.7e+02 Score=30.96 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 005942 525 FAEVETLLMRECEQVE----KARQRFATERTRIVST 556 (668)
Q Consensus 525 feeLE~~le~Er~~LE----~~Rq~L~~eR~~~~~~ 556 (668)
+.+||.-+.+|..+|| ++++-||..|..++..
T Consensus 53 ~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G 88 (337)
T PTZ00007 53 FDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQ 88 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 3455555666666666 6788999999999873
No 163
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.99 E-value=1e+03 Score=25.39 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 513 HQLKRLELKLKQFAE----VETLLMRECEQVEKARQRFATERTR 552 (668)
Q Consensus 513 ~QLkKLElKLk~fee----LE~~le~Er~~LE~~Rq~L~~eR~~ 552 (668)
.+.+.++.+-+.+++ |..-|+.|++++.+..++++..+++
T Consensus 229 ~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l~~k~~ 272 (297)
T PF02841_consen 229 EQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLLEQKLQ 272 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554 4444666666555555555554444
No 164
>PRK12705 hypothetical protein; Provisional
Probab=20.98 E-value=1e+03 Score=27.90 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 005942 518 LELKLKQFAEVETLLMRECEQVE 540 (668)
Q Consensus 518 LElKLk~feeLE~~le~Er~~LE 540 (668)
|+.|...+++.|..|+...+.|+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~ 115 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALS 115 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 165
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=20.40 E-value=1.1e+02 Score=31.53 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 109 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 109 ktpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
.+.++|-.+|+.|++- +..|++.| +-.+--..+ |+.-..+..-..-|+..|||...
T Consensus 3 l~~~v~~~L~~~I~~g-~l~pG~~LpsE~eLae~~-gVSRtpVREAL~~Le~~GlV~~~ 59 (253)
T PRK10421 3 LSDEVADRVRALIEEK-NLEAGMKLPAERQLAMQL-GVSRNSLREALAKLVSEGVLLSR 59 (253)
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCcCCCHHHHHHHh-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 3568999999999976 78999999 566644433 55567899999999999999873
Done!