Query 005942
Match_columns 668
No_of_seqs 251 out of 729
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 4.6E-42 1.6E-46 307.0 9.7 96 74-170 9-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 4.7E-41 1.6E-45 304.5 10.1 98 72-171 9-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 4.5E-15 1.5E-19 127.0 9.1 57 296-352 16-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 1.5E-12 5.3E-17 104.8 7.0 49 297-345 8-58 (58)
5 1x41_A Transcriptional adaptor 99.2 1.4E-11 4.7E-16 99.8 7.2 51 296-346 6-57 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2.6E-10 9E-15 96.1 5.1 61 282-347 6-70 (73)
7 1gvd_A MYB proto-oncogene prot 98.9 9.7E-10 3.3E-14 86.1 5.9 45 298-342 3-48 (52)
8 1guu_A C-MYB, MYB proto-oncoge 98.9 9.7E-10 3.3E-14 86.0 5.6 45 298-342 3-48 (52)
9 2d9a_A B-MYB, MYB-related prot 98.9 1.8E-09 6.1E-14 87.1 7.2 47 296-342 6-53 (60)
10 2yum_A ZZZ3 protein, zinc fing 98.9 8.3E-10 2.9E-14 92.8 5.3 48 296-343 6-59 (75)
11 1wgx_A KIAA1903 protein; MYB D 98.9 1.6E-09 5.4E-14 91.2 6.6 48 297-344 7-58 (73)
12 2cu7_A KIAA1915 protein; nucle 98.9 1.8E-09 6.2E-14 90.3 6.7 47 296-342 7-53 (72)
13 1w0t_A Telomeric repeat bindin 98.9 1.9E-09 6.4E-14 84.9 6.1 44 299-342 3-49 (53)
14 2dim_A Cell division cycle 5-l 98.9 4.2E-09 1.4E-13 87.5 7.3 47 296-342 7-54 (70)
15 3sjm_A Telomeric repeat-bindin 98.8 6.1E-09 2.1E-13 85.5 6.1 45 298-342 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.8 9E-09 3.1E-13 85.3 6.1 46 297-342 9-57 (69)
17 2din_A Cell division cycle 5-l 98.7 1.5E-08 5.1E-13 83.2 6.5 46 296-342 7-52 (66)
18 2eqr_A N-COR1, N-COR, nuclear 98.7 3.3E-08 1.1E-12 80.3 6.2 44 298-341 12-55 (61)
19 2cjj_A Radialis; plant develop 98.6 2.5E-08 8.6E-13 87.7 5.4 45 298-342 8-56 (93)
20 2llk_A Cyclin-D-binding MYB-li 98.6 5E-08 1.7E-12 82.2 7.0 46 296-342 21-66 (73)
21 2ltp_A Nuclear receptor corepr 98.0 4.3E-09 1.5E-13 91.8 0.0 47 296-342 14-60 (89)
22 2k9n_A MYB24; R2R3 domain, DNA 98.5 9E-08 3.1E-12 85.6 6.0 44 299-342 2-46 (107)
23 1gv2_A C-MYB, MYB proto-oncoge 98.5 9.8E-08 3.4E-12 84.8 6.0 45 298-342 4-49 (105)
24 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.6E-07 5.5E-12 83.9 6.7 46 297-342 52-97 (107)
25 2iw5_B Protein corest, REST co 98.5 1.5E-07 5E-12 94.4 6.7 46 297-342 132-177 (235)
26 3osg_A MYB21; transcription-DN 98.5 1.2E-07 4.2E-12 87.2 5.5 46 297-342 10-55 (126)
27 2ckx_A NGTRF1, telomere bindin 98.5 1.9E-07 6.5E-12 80.5 5.9 44 299-342 1-49 (83)
28 1gv2_A C-MYB, MYB proto-oncoge 98.4 1.5E-07 5.3E-12 83.5 5.6 46 297-342 55-100 (105)
29 1h8a_C AMV V-MYB, MYB transfor 98.4 2.9E-07 1E-11 84.6 7.2 46 297-342 26-72 (128)
30 3osg_A MYB21; transcription-DN 98.4 1.7E-07 5.9E-12 86.2 5.6 46 297-342 61-106 (126)
31 1h8a_C AMV V-MYB, MYB transfor 98.4 4.1E-07 1.4E-11 83.7 6.2 46 297-342 78-123 (128)
32 3zqc_A MYB3; transcription-DNA 98.3 4.5E-07 1.5E-11 83.9 5.9 46 297-342 53-98 (131)
33 3zqc_A MYB3; transcription-DNA 98.3 1.7E-07 5.8E-12 86.7 2.7 44 299-342 3-47 (131)
34 2cqq_A RSGI RUH-037, DNAJ homo 98.3 7.6E-07 2.6E-11 74.8 6.2 49 297-347 7-59 (72)
35 2yqk_A Arginine-glutamic acid 98.3 1.4E-06 4.9E-11 71.1 7.0 44 297-340 8-52 (63)
36 2z3y_A Lysine-specific histone 98.2 8.7E-07 3E-11 101.5 5.3 87 81-170 8-98 (662)
37 2xag_B REST corepressor 1; ami 98.2 1.5E-06 5.3E-11 95.8 6.8 46 297-342 379-424 (482)
38 2roh_A RTBP1, telomere binding 98.2 1.9E-06 6.6E-11 79.2 6.2 46 297-342 30-80 (122)
39 1h89_C C-MYB, MYB proto-oncoge 98.1 2.4E-06 8.3E-11 81.2 6.2 46 297-342 109-154 (159)
40 4gut_A Lysine-specific histone 98.1 4.3E-06 1.5E-10 97.9 9.5 89 74-168 215-321 (776)
41 2aje_A Telomere repeat-binding 98.1 1.8E-06 6E-11 77.6 4.6 46 297-342 12-62 (105)
42 1h89_C C-MYB, MYB proto-oncoge 98.1 3.2E-06 1.1E-10 80.4 6.6 46 297-342 57-103 (159)
43 2e5r_A Dystrobrevin alpha; ZZ 98.1 2.5E-06 8.5E-11 69.8 4.7 48 241-288 12-61 (63)
44 2juh_A Telomere binding protei 98.1 4.4E-06 1.5E-10 76.7 6.1 46 297-342 16-66 (121)
45 2crg_A Metastasis associated p 98.0 5.4E-06 1.9E-10 69.1 5.8 44 298-341 8-52 (70)
46 4eef_G F-HB80.4, designed hema 97.9 9.1E-07 3.1E-11 74.2 -1.1 43 298-340 20-66 (74)
47 4a69_C Nuclear receptor corepr 97.9 1.2E-05 4E-10 70.8 5.8 42 299-340 44-85 (94)
48 2dip_A Zinc finger SWIM domain 97.8 4.1E-06 1.4E-10 74.3 1.7 54 241-305 32-86 (98)
49 1x58_A Hypothetical protein 49 97.8 1.7E-05 5.7E-10 64.7 4.9 46 297-342 7-55 (62)
50 2fc7_A ZZZ3 protein; structure 97.7 2E-05 7E-10 67.7 4.5 52 240-291 21-77 (82)
51 1ign_A Protein (RAP1); RAP1,ye 97.4 7.5E-05 2.6E-09 75.5 4.2 46 297-342 7-58 (246)
52 2xag_A Lysine-specific histone 97.2 0.00026 8.7E-09 83.8 6.4 86 81-169 179-268 (852)
53 1tot_A CREB-binding protein; z 97.0 0.00016 5.5E-09 56.9 1.3 44 240-289 6-49 (52)
54 3hm5_A DNA methyltransferase 1 96.4 0.0046 1.6E-07 54.2 5.8 44 299-342 31-79 (93)
55 2ebi_A DNA binding protein GT- 96.1 0.0034 1.2E-07 53.7 3.4 45 298-342 4-62 (86)
56 1ug2_A 2610100B20RIK gene prod 96.0 0.0089 3E-07 52.0 5.7 44 299-342 34-80 (95)
57 1fex_A TRF2-interacting telome 95.6 0.0093 3.2E-07 48.0 3.8 43 299-341 3-55 (59)
58 1ofc_X ISWI protein; nuclear p 94.7 0.023 7.7E-07 59.7 4.7 46 299-345 111-157 (304)
59 2xag_B REST corepressor 1; ami 94.4 0.0069 2.4E-07 67.1 0.0 44 299-342 190-233 (482)
60 4iej_A DNA methyltransferase 1 94.2 0.075 2.6E-06 46.6 5.9 45 298-342 30-79 (93)
61 2lr8_A CAsp8-associated protei 93.1 0.0092 3.2E-07 49.3 0.0 43 299-342 15-60 (70)
62 2cuj_A Transcriptional adaptor 92.6 0.23 8E-06 44.6 6.7 70 86-164 37-106 (108)
63 2aqe_A Transcriptional adaptor 92.3 0.16 5.6E-06 44.1 5.2 70 86-164 19-88 (90)
64 2xb0_X Chromo domain-containin 91.7 0.16 5.6E-06 52.4 5.2 31 296-326 166-197 (270)
65 4b4c_A Chromodomain-helicase-D 90.7 0.19 6.5E-06 49.2 4.4 30 298-327 134-164 (211)
66 2elj_A Transcriptional adapter 90.6 0.31 1E-05 42.1 5.1 70 86-163 19-88 (88)
67 1irz_A ARR10-B; helix-turn-hel 87.1 1.1 3.6E-05 36.7 5.7 45 298-342 7-56 (64)
68 4b4c_A Chromodomain-helicase-D 86.8 0.65 2.2E-05 45.4 5.2 39 299-337 8-51 (211)
69 1ofc_X ISWI protein; nuclear p 84.2 0.81 2.8E-05 48.0 4.6 47 297-343 211-273 (304)
70 2y9y_A Imitation switch protei 79.9 1.5 5E-05 47.2 4.7 44 299-343 124-169 (374)
71 2y9y_A Imitation switch protei 64.4 7 0.00024 42.0 5.4 45 298-342 228-288 (374)
72 2d8v_A Zinc finger FYVE domain 58.2 12 0.00042 30.7 4.5 47 240-289 8-54 (67)
73 1f5n_A Interferon-induced guan 56.9 72 0.0025 36.1 12.3 55 501-558 507-561 (592)
74 3ny3_A E3 ubiquitin-protein li 56.2 6.1 0.00021 33.1 2.5 39 246-288 7-50 (75)
75 3nis_A E3 ubiquitin-protein li 53.5 7.9 0.00027 33.0 2.8 40 245-288 10-54 (82)
76 2heo_A Z-DNA binding protein 1 52.4 14 0.00049 29.4 4.1 53 111-165 5-57 (67)
77 3q8t_A Beclin-1; autophagy, AT 48.6 1.3E+02 0.0045 25.9 12.4 48 509-556 35-82 (96)
78 4ham_A LMO2241 protein; struct 46.7 31 0.0011 30.9 5.9 57 108-166 11-71 (134)
79 1v5n_A PDI-like hypothetical p 45.9 13 0.00043 31.9 2.9 31 240-271 47-77 (89)
80 2fu4_A Ferric uptake regulatio 43.2 16 0.00054 29.7 3.1 49 117-165 18-70 (83)
81 2qdq_A Talin-1; dimerisation d 40.9 51 0.0018 25.6 5.3 32 523-555 9-40 (50)
82 3tqn_A Transcriptional regulat 40.9 33 0.0011 29.9 5.0 55 109-165 10-65 (113)
83 1weo_A Cellulose synthase, cat 40.8 15 0.00052 31.9 2.6 48 239-287 15-71 (93)
84 3kyp_A Pfnaps, nucleosome asse 39.3 42 0.0014 32.6 5.9 39 514-555 4-46 (193)
85 2o03_A Probable zinc uptake re 38.5 38 0.0013 30.2 5.1 52 113-165 8-63 (131)
86 3e7l_A Transcriptional regulat 38.4 27 0.00094 27.3 3.7 27 303-329 18-44 (63)
87 1mzb_A Ferric uptake regulatio 38.1 32 0.0011 30.9 4.6 49 117-165 19-71 (136)
88 1ign_A Protein (RAP1); RAP1,ye 38.1 43 0.0015 34.0 5.8 24 319-342 173-196 (246)
89 3by6_A Predicted transcription 37.8 47 0.0016 29.6 5.6 54 110-165 13-67 (126)
90 3oja_B Anopheles plasmodium-re 37.4 1.3E+02 0.0045 33.0 10.3 28 527-554 548-575 (597)
91 2ek5_A Predicted transcription 36.1 33 0.0011 30.9 4.3 54 110-165 6-60 (129)
92 2w57_A Ferric uptake regulatio 33.3 33 0.0011 31.5 3.9 49 117-165 18-70 (150)
93 1gmj_A ATPase inhibitor; coile 32.9 2.3E+02 0.0079 24.2 9.2 53 488-544 27-79 (84)
94 2v4h_A NF-kappa-B essential mo 32.5 2.7E+02 0.0093 24.9 9.4 14 527-540 73-86 (110)
95 2htj_A P fimbrial regulatory p 31.4 55 0.0019 26.4 4.6 46 118-166 2-47 (81)
96 2xig_A Ferric uptake regulatio 30.0 53 0.0018 30.1 4.7 49 116-165 27-79 (150)
97 3ic7_A Putative transcriptiona 29.1 32 0.0011 30.6 3.0 58 107-166 10-68 (126)
98 2xb0_X Chromo domain-containin 28.2 66 0.0023 33.0 5.5 38 299-336 4-46 (270)
99 2jee_A YIIU; FTSZ, septum, coi 27.9 1.9E+02 0.0066 24.5 7.3 43 515-557 8-50 (81)
100 2olm_A Nucleoporin-like protei 27.8 75 0.0026 29.4 5.3 57 240-310 25-81 (140)
101 3gp4_A Transcriptional regulat 27.6 2.4E+02 0.0083 25.6 8.7 35 508-542 83-117 (142)
102 2e50_A Protein SET; histone ch 25.6 1.6E+02 0.0056 29.1 7.6 30 526-555 43-76 (225)
103 3s4r_A Vimentin; alpha-helix, 25.4 2.6E+02 0.0091 23.9 8.0 27 528-554 50-76 (93)
104 2fe3_A Peroxide operon regulat 24.6 74 0.0025 28.9 4.6 48 117-165 23-74 (145)
105 3c7j_A Transcriptional regulat 24.2 38 0.0013 33.3 2.7 57 108-166 26-82 (237)
106 2crr_A Stromal membrane-associ 23.4 55 0.0019 30.4 3.5 95 239-350 28-129 (141)
107 2qag_B Septin-6, protein NEDD5 22.9 18 0.00061 39.5 0.0 46 512-557 354-400 (427)
108 1wfh_A Zinc finger (AN1-like) 22.8 95 0.0032 25.3 4.3 45 239-289 14-59 (64)
109 3neu_A LIN1836 protein; struct 22.5 74 0.0025 28.1 4.1 55 109-165 14-69 (125)
110 3pp5_A BRK1, protein brick1; t 21.7 1.5E+02 0.005 24.8 5.3 67 485-559 3-69 (73)
111 2p57_A GTPase-activating prote 21.2 49 0.0017 31.0 2.6 33 238-273 35-67 (144)
112 1umq_A Photosynthetic apparatu 21.1 79 0.0027 26.5 3.7 30 300-329 37-66 (81)
113 3htu_B Vacuolar protein-sortin 20.8 80 0.0027 23.3 3.1 25 513-537 12-37 (39)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=4.6e-42 Score=306.96 Aligned_cols=96 Identities=34% Similarity=0.685 Sum_probs=84.2
Q ss_pred cceeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHH
Q 005942 74 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRI 153 (668)
Q Consensus 74 ~~ivIPs~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RV 153 (668)
|+=.-|+|+.||+|++||+|||++|||||+|++++|||++|++|||+||++||+||.+|||+|+||++|+| |+++|+||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RV 87 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRL 87 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred HHhhhhhcccccccCCC
Q 005942 154 FRFLNHWGIINYCAAVQ 170 (668)
Q Consensus 154 H~FLE~WGLINYqvdp~ 170 (668)
|+|||+||||||||||+
T Consensus 88 h~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 88 HKFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHHTTSSSSCC---
T ss_pred HHHHHHcCeeccCCCCC
Confidence 99999999999999974
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=304.45 Aligned_cols=98 Identities=23% Similarity=0.360 Sum_probs=93.6
Q ss_pred CCcceeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhcc--CCCChhH
Q 005942 72 GSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPED 149 (668)
Q Consensus 72 ~~~~ivIPs~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L--~gddv~~ 149 (668)
...+++||+|+.||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+||++| +| |+++
T Consensus 9 ~~~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~ 86 (111)
T 2dce_A 9 EEEELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNC 86 (111)
T ss_dssp SCCSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHH
T ss_pred CCcCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHH
Confidence 3468999999999999999999999999999998 899999999999999999999999999999999999 58 5999
Q ss_pred HHHHHHhhhhhcccccccCCCC
Q 005942 150 LTRIFRFLNHWGIINYCAAVQS 171 (668)
Q Consensus 150 i~RVH~FLE~WGLINYqvdp~~ 171 (668)
|+|||+|||+||||||||++.+
T Consensus 87 i~RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 87 IGRIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHHHcCeeecCCChhh
Confidence 9999999999999999999865
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=127.01 Aligned_cols=57 Identities=54% Similarity=1.117 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhCCCCCCCccCC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 352 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~fL~~~ 352 (668)
.....||.+|+.+||++|++||++|.+||++||+||+.||+.||.++||+|+|+.+.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 346799999999999999999999999999999999999999999999999998764
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.34 E-value=1.5e-12 Score=104.77 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhCCCC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 345 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg-tKT~~eCi~hFlqLPIe 345 (668)
....||.+|+.+|+++|++|| +||.+||++|+ +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 457899999999999999999 99999999999 99999999999999874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.4e-11 Score=99.78 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhCCCCC
Q 005942 296 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 346 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqLPIeD 346 (668)
.....||.+|+.+|+++|++|| ++|.+||++|++||+.||+.||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4567899999999999999999 89999999999999999999999987754
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=2.6e-10 Score=96.10 Aligned_cols=61 Identities=30% Similarity=0.530 Sum_probs=50.5
Q ss_pred CCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 005942 282 LDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 347 (668)
Q Consensus 282 ~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~ 347 (668)
.++.+.+.. ......||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|.
T Consensus 6 ~~~~~~~~~----~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 6 SGSLRKERA----RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSCCCCCTT----TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccc----ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 344444432 24567899999999999999998 7899999999999999999999987 5554
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.94 E-value=9.7e-10 Score=86.11 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...||.+|+.+|+++|++|| ++|..||++|++||..||+.||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999999 5899999999999999999999864
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.93 E-value=9.7e-10 Score=86.03 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYND-NWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~-nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...||.+|+.+|+++|+.||. +|..||++|++||+.||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999995 999999999999999999999864
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.92 E-value=1.8e-09 Score=87.05 Aligned_cols=47 Identities=19% Similarity=0.516 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|+++|++|| ++|..||++|++||..||+.||..+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 3467899999999999999999 7999999999999999999999865
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=8.3e-10 Score=92.85 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHhCCCCHHHHHHHHhhCC
Q 005942 296 IDGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRLP 343 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g------~nW~~IAe~VgtKT~~eCi~hFlqLP 343 (668)
.....||.+|+.+|+++|++|| ++|..||++|++||..||+.||..+-
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYF 59 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 79999999999999999999997653
No 11
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.91 E-value=1.6e-09 Score=91.24 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCC
Q 005942 297 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPM 344 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~VgtKT~~eCi~hFlqLPI 344 (668)
....||.+|+.+|.+||..|+ ++|++||++||+||.+||+.||..|+=
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 356899999999999999997 679999999999999999999999843
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=1.8e-09 Score=90.28 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|+++++.||.+|..||++|++||..||+.||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999876
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.89 E-value=1.9e-09 Score=84.95 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg--tKT~~eCi~hFlqL 342 (668)
..||.+|+.+|+++|+.|| ++|..||++++ +||..||..+|..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999 89999999999 99999999999864
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=4.2e-09 Score=87.48 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|+++|++|| ++|..||.+|++||..||+.||..+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3457899999999999999999 8999999999999999999999875
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.79 E-value=6.1e-09 Score=85.50 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg--tKT~~eCi~hFlqL 342 (668)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999 79999999977 89999999999764
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.76 E-value=9e-09 Score=85.29 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC--CCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg--tKT~~eCi~hFlqL 342 (668)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 89999999999 99999999999875
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-08 Score=83.22 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|+++++.||.+|.+||+.+| ||..||+.||..+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 345789999999999999999999999999665 9999999999975
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=3.3e-08 Score=80.28 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhh
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 341 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlq 341 (668)
...||++|..+|++++..||.+|..||++|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999863
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.63 E-value=2.5e-08 Score=87.71 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...||.+|+.+|++++.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56899999999999999996 6799999999999999999999886
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.63 E-value=5e-08 Score=82.17 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|++++++||.+|..||+++ +||..+|..+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34679999999999999999999999999999 99999999999865
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.05 E-value=4.3e-09 Score=91.75 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 296 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
.....||.+|+.+|+++++.||.+|..||++|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34678999999999999999999999999999999999999999854
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.52 E-value=9e-08 Score=85.61 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
..||.+|+.+|+++|+.|| ++|..||++|++||+.||..||.++
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 4799999999999999999 6999999999999999999999874
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.52 E-value=9.8e-08 Score=84.77 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
...||.+|+.+|+++|+.|| ++|..||++|++||..||..||..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 56899999999999999999 5899999999999999999999875
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.49 E-value=1.6e-07 Score=83.95 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999864
No 25
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.48 E-value=1.5e-07 Score=94.38 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||++|..++++|+.+||.||..||++|||||..||+.||...
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999754
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.47 E-value=1.2e-07 Score=87.19 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|+++|+.||.+|..||+++++||..||+.||..+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 3578999999999999999999999999999999999999999974
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.45 E-value=1.9e-07 Score=80.50 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHH----hCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~----VgtKT~~eCi~hFlqL 342 (668)
..||.+|+..|+++|++|| |+|.+|++. +.+||..+|..||..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 3699999999999999999 799999997 7889999999999876
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.45 E-value=1.5e-07 Score=83.48 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999754
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.43 E-value=2.9e-07 Score=84.64 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|+++|+.|| ++|.+||++|++||..||..||..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 457899999999999999999 6899999999999999999999873
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.43 E-value=1.7e-07 Score=86.17 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.36 E-value=4.1e-07 Score=83.68 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999865
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.34 E-value=4.5e-07 Score=83.86 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999876
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.32 E-value=1.7e-07 Score=86.73 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
+.||.+|+.+|+++|+.|| +||..||++|++||..||..||.++
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 5799999999999999999 8999999999999999999999874
No 34
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=7.6e-07 Score=74.77 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHhhCCCCCC
Q 005942 297 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 347 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~VgtKT~~eCi~hFlqLPIeD~ 347 (668)
....||.+|+.+|..++.+|+ +.|++||+++| ||.+||+.||..| .+|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 356899999999999999997 56999999995 9999999999988 6664
No 35
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-06 Score=71.14 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHh
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 340 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~-VgtKT~~eCi~hFl 340 (668)
....||++|..++++|+.+||.||..|+++ |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 457899999999999999999999999996 99999999999985
No 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.19 E-value=8.7e-07 Score=101.49 Aligned_cols=87 Identities=21% Similarity=0.392 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhh----ccCCCChhHHHHHHHh
Q 005942 81 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG----LVDGVSPEDLTRIFRF 156 (668)
Q Consensus 81 ~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~----~L~gddv~~i~RVH~F 156 (668)
+++-|+++.+|+.|+.+|||+-.+ +..+...|+.|||.|+.+|+.||..+||+.+|.. -+.. |...|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 457799999999999999999754 2335679999999999999999999999999843 2334 46789999999
Q ss_pred hhhhcccccccCCC
Q 005942 157 LNHWGIINYCAAVQ 170 (668)
Q Consensus 157 LE~WGLINYqvdp~ 170 (668)
+..||.||+++.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999877653
No 37
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.18 E-value=1.5e-06 Score=95.83 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|.+++++||.+||.||..||++|||||..||+.||..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999753
No 38
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.17 E-value=1.9e-06 Score=79.18 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~V----gtKT~~eCi~hFlqL 342 (668)
....||.+|+..|+++|++|| |+|.+|+++. ..||..+|..+|..+
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 7999999986 689999999999876
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.13 E-value=2.4e-06 Score=81.24 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999865
No 40
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.13 E-value=4.3e-06 Score=97.90 Aligned_cols=89 Identities=24% Similarity=0.329 Sum_probs=73.3
Q ss_pred cceeCCCCCCCCCC------------CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhc
Q 005942 74 RVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGL 141 (668)
Q Consensus 74 ~~ivIPs~S~WF~~------------~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~ 141 (668)
+...+..|-.||-. +.++..|+.+||||..+ +..|+.|||.|+.+|+.||...||...|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~~ 288 (776)
T 4gut_A 215 HVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIPH 288 (776)
T ss_dssp ---CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGGG
T ss_pred cccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhhh
Confidence 45667788888866 99999999999999754 5799999999999999999999999999865
Q ss_pred cC--CC----ChhHHHHHHHhhhhhcccccccC
Q 005942 142 VD--GV----SPEDLTRIFRFLNHWGIINYCAA 168 (668)
Q Consensus 142 L~--gd----dv~~i~RVH~FLE~WGLINYqvd 168 (668)
+. +. .+..+.||++||..+|+||+.+-
T Consensus 289 ~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 289 IIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 42 11 14567999999999999999764
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.12 E-value=1.8e-06 Score=77.56 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~V----gtKT~~eCi~hFlqL 342 (668)
....||.+|+..|+++|++|| |+|.+|++.. ..||..+|..+|..+
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 7999999976 689999999999876
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.11 E-value=3.2e-06 Score=80.44 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+|+++|+.|| ++|..||+++++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 5899999999999999999999874
No 43
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=2.5e-06 Score=69.82 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=43.9
Q ss_pred CCCCCCCCC-CCcceeecccCcCcccChhhhhcCCCCCCCC-CCCceecC
Q 005942 241 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVD 288 (668)
Q Consensus 241 ~~C~~C~~~-~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~vd 288 (668)
..|+.|+.. +...+|+|.+|.|++||..||..|++...|+ +|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 679999975 9999999999999999999999999999997 78998875
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.06 E-value=4.4e-06 Score=76.73 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh----CCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~V----gtKT~~eCi~hFlqL 342 (668)
....||.+|+..|+++|++|| |+|.+|+++. ..||..+|..+|..+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 457999999999999999999 7999999996 689999999999875
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.04 E-value=5.4e-06 Score=69.12 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-hCCCCHHHHHHHHhh
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVR 341 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~IAe~-VgtKT~~eCi~hFlq 341 (668)
...||++|..++.+|+.+||.||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46899999999999999999999999995 999999999999964
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.92 E-value=9.1e-07 Score=74.18 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHhCCCCHHHHHHHHh
Q 005942 298 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFV 340 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~VgtKT~~eCi~hFl 340 (668)
+..||.+|..+|..||.+|. +.|++||+.|++||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999997 57999999999999999999984
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.91 E-value=1.2e-05 Score=70.80 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHh
Q 005942 299 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFV 340 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFl 340 (668)
..||++|-.++.+++..||.+|..||++|++||..||+.+|.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 579999999999999999999999999999999999999985
No 48
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.84 E-value=4.1e-06 Score=74.29 Aligned_cols=54 Identities=30% Similarity=0.615 Sum_probs=45.0
Q ss_pred CCCCCCCC-CCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHH
Q 005942 241 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQE 305 (668)
Q Consensus 241 ~~C~~C~~-~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~E 305 (668)
..|+.|+. ++...+|+|..|.+++||..||..+. |..|.|+++... ...|+..|
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~~-------~~~w~~~e 86 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREKR-------NQKWRSLE 86 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCSS-------SCCCEECC
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecCC-------CCCCcccc
Confidence 68999996 68889999999999999999999985 678999988753 23577544
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.83 E-value=1.7e-05 Score=64.65 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~nW~~IAe---~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+..|+++|++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999995 56689999999999765
No 50
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.75 E-value=2e-05 Score=67.65 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred CCCCCCCCC-CCCcceeecccCcC---cccChhhhhcCCCCCCCC-CCCceecCCCC
Q 005942 240 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPAR 291 (668)
Q Consensus 240 ~~~C~~C~~-~~~~~~y~~~k~~d---~~LC~~CF~~G~~~~~hs-s~df~~vd~~~ 291 (668)
...|+.|++ ++...+|+|..|.+ ++||..||..|.+...|. .|.|+++....
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 468999996 68889999999999 999999999999888895 89999987643
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.43 E-value=7.5e-05 Score=75.55 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC------HHHHHHHhCCCCHHHHHHHHhhC
Q 005942 297 DGETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g~n------W~~IAe~VgtKT~~eCi~hFlqL 342 (668)
....||.+|+.+||+.+++||.. |.+||+++.+||..+|+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35689999999999999999853 99999999999999999999875
No 52
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.24 E-value=0.00026 Score=83.81 Aligned_cols=86 Identities=21% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHh----hccCCCChhHHHHHHHh
Q 005942 81 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ----GLVDGVSPEDLTRIFRF 156 (668)
Q Consensus 81 ~S~WF~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr----~~L~gddv~~i~RVH~F 156 (668)
|.+.|+.+.+|..|+.+||++-.. .-..-.+|+.+||.|+..|+.||...++...|. |.+.. |...|.+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 668999999999999999998543 112457999999999999999999999987763 33334 46789999999
Q ss_pred hhhhcccccccCC
Q 005942 157 LNHWGIINYCAAV 169 (668)
Q Consensus 157 LE~WGLINYqvdp 169 (668)
+..|++||+++..
T Consensus 256 ~~~~~~~~~~~~~ 268 (852)
T 2xag_A 256 LERHGLINFGIYK 268 (852)
T ss_dssp HHHTTSSSCSSCB
T ss_pred HHHHHHHhcCccc
Confidence 9999999987764
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.03 E-value=0.00016 Score=56.94 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 005942 240 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 289 (668)
Q Consensus 240 ~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~ 289 (668)
...|+.|+..+ ..+|+|..|.+++||..||..+. | .|.++++..
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 35799999986 68999999999999999999875 5 578887753
No 54
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.36 E-value=0.0046 Score=54.24 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHh-----CCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g~nW~~IAe~V-----gtKT~~eCi~hFlqL 342 (668)
.+||.+|+..|++.+++|+-.|--|++.. +.||-++...+|-.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.07 E-value=0.0034 Score=53.65 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHhC----CCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g----------~nW~~IAe~Vg----tKT~~eCi~hFlqL 342 (668)
...||.+|+++||++..... ..|+.||+.|. .||++||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35799999999999997532 37999999985 69999999999876
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.02 E-value=0.0089 Score=52.03 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g---~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
--||.+|+..+|.+-++-| .-|..||+.+|+||++|...||.+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3699999999999999988 6999999999999999999999886
No 57
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.57 E-value=0.0093 Score=47.97 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HhCCCCHHHHHHHHhh
Q 005942 299 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 341 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~--------g-~nW~~IAe-~VgtKT~~eCi~hFlq 341 (668)
..||.+|+..|++.|..| | .-|.++++ .+..+|-+.|+.||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 479999999999999999 3 46999999 7999999999999987
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.72 E-value=0.023 Score=59.69 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhCCCCHHHHHHHHhhCCCC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPME 345 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~VgtKT~~eCi~hFlqLPIe 345 (668)
..||..+-..++.|.++|| ++|..||..|++||++|+.. |.+..++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~-Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE-YNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH-HHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH-HHHHHHH
Confidence 4799999999999999999 89999999999999999954 4444443
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.43 E-value=0.0069 Score=67.07 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
..||.+|..++.+++..||.||..|+++|++||..+|+.+|...
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 58999999999999999999999999999999999999998654
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.15 E-value=0.075 Score=46.58 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHhC-----CCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~nW~~IAe~Vg-----tKT~~eCi~hFlqL 342 (668)
...||.+|+..|++.+++|+-.|--|++... .||-++-..||.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999974 69999999999764
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.11 E-value=0.0092 Score=49.32 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 299 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g---~nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
--||.+|+-.+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 3699999999999999888 4999999999 79999999999886
No 62
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=92.57 E-value=0.23 Score=44.57 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=58.1
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 005942 86 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 164 (668)
Q Consensus 86 ~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLIN 164 (668)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+- .|+.++||+... .|++-..||+.||.+-|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~k-ID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHT-SCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhc-ccHHHHHHHHHHHHHcCCCC
Confidence 4568899999866443 5579999999999999986543 389999998764 57999999999999999985
No 63
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=92.32 E-value=0.16 Score=44.05 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=57.4
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 005942 86 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 164 (668)
Q Consensus 86 ~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLIN 164 (668)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+. .|+.++||.... .|++-..||+.||.+-|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~k-iD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIK-IDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSS-SSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHc-ccHHHHHHHHHHHHHcCCCC
Confidence 4567889999866443 4579999999999999886543 389999998764 57999999999999999995
No 64
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.66 E-value=0.16 Score=52.39 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=27.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 005942 296 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEH 326 (668)
Q Consensus 296 ~~~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~ 326 (668)
..+-.|+.+|+..||-||.+|| |+|+.|-.-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3567899999999999999999 999999764
No 65
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.66 E-value=0.19 Score=49.18 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHh
Q 005942 298 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV 327 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g-~nW~~IAe~V 327 (668)
...||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 46799999999999999999 9999987643
No 66
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=90.57 E-value=0.31 Score=42.15 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=57.4
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccc
Q 005942 86 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 163 (668)
Q Consensus 86 ~~~~Ih~iEk~~lPefF~g~~~~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLI 163 (668)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+ ...++.++||... ..|++-..||+.||.+-|.|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~-kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELL-NIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHT-TSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHH-cccHHHHHHHHHHHHHcCCC
Confidence 4567889999865443 557999999999999988654 3468999999876 45799999999999999986
No 67
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.12 E-value=1.1 Score=36.73 Aligned_cols=45 Identities=9% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHhCC--CCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVST--KSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g~n---W~~IAe~Vgt--KT~~eCi~hFlqL 342 (668)
.-.||.+.-..+++||+..|.+ |..|-+.++. -|.+++..|.-.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999955 8999999984 6999999887543
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.84 E-value=0.65 Score=45.37 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHhC--CCCHHHHHH
Q 005942 299 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 337 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g---~nW~~IAe~Vg--tKT~~eCi~ 337 (668)
.+||..|...|+.|+.+|| +.|++|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 6899999999999999999 78999999854 799888775
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=84.24 E-value=0.81 Score=47.98 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HhCCCCHHHHHHHHhhCC
Q 005942 297 DGETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRLP 343 (668)
Q Consensus 297 ~~~~WT~~Eel~LLeaIe~~g----~nW~~IAe------------~VgtKT~~eCi~hFlqLP 343 (668)
.+..||.+|+-.||-++.+|| |+|+.|-. ++-+||+.|+..|...|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 356899999999999999998 89999984 455899999988877663
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.86 E-value=1.5 Score=47.22 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHhC-CCCHHHHHHHHhhCC
Q 005942 299 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLP 343 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g-~nW~~IAe~Vg-tKT~~eCi~hFlqLP 343 (668)
..||..|-..++.|.++|| +|-..||..|+ +||++|+. .|.+..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence 4799999999999999999 89999999998 99999988 444443
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=64.36 E-value=7 Score=42.02 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHh------------CCCCHHHHHHHHhhC
Q 005942 298 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRL 342 (668)
Q Consensus 298 ~~~WT~~Eel~LLeaIe~~g----~nW~~IAe~V------------gtKT~~eCi~hFlqL 342 (668)
+..||.+|+-.||-+|.+|| |+|+.|-..| .+||+.++..|...|
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 56899999999999999998 8999997764 479999988887665
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.15 E-value=12 Score=30.72 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCC
Q 005942 240 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 289 (668)
Q Consensus 240 ~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~ 289 (668)
.+.|..|..+. .++|..|.+-.-|..||.++..--....|..++...
T Consensus 8 ~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 8 LPWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHP 54 (67)
T ss_dssp CSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCC
T ss_pred CCeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeeccC
Confidence 35799999875 489999977789999998877433334444444433
No 73
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=56.95 E-value=72 Score=36.15 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005942 501 REIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRL 558 (668)
Q Consensus 501 rEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl 558 (668)
+|.++-....++.|-+-.+..++++.+ -||+||+++.+..++.+..++..-.+.|
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777777776666555 7888988888888888887777655444
No 74
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=56.17 E-value=6.1 Score=33.10 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=27.0
Q ss_pred CCCCCC--cceeecccCc---CcccChhhhhcCCCCCCCCCCCceecC
Q 005942 246 CSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 288 (668)
Q Consensus 246 C~~~~~--~~~y~~~k~~---d~~LC~~CF~~G~~~~~hss~df~~vd 288 (668)
|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 444443 3667777663 357999999875 47889988754
No 75
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=53.48 E-value=7.9 Score=33.01 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=27.9
Q ss_pred CCCCCCC--cceeecccCc---CcccChhhhhcCCCCCCCCCCCceecC
Q 005942 245 YCSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 288 (668)
Q Consensus 245 ~C~~~~~--~~~y~~~k~~---d~~LC~~CF~~G~~~~~hss~df~~vd 288 (668)
.|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3555554 3677777663 467999999765 58889998754
No 76
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=52.36 E-value=14 Score=29.45 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 111 PEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 111 pe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
|+.-.+.|..|++....+. .+++.++--+.+ |..-..+.|+.+=|+..|+|-.
T Consensus 5 ~~~m~~~~~~IL~~L~~~~-~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDG-GPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp ----CHHHHHHHHHHHHHC-SCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccccHHHHHHHHHHHHcC-CCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEec
Confidence 4444457889999987653 579999976665 5668899999999999999853
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.63 E-value=1.3e+02 Score=25.94 Aligned_cols=48 Identities=10% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 509 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVST 556 (668)
Q Consensus 509 ~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~ 556 (668)
..|+.+|+.++..+..+++-|..+.+|+..+.++.-.+..+|.++-.+
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999888877554
No 78
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=46.67 E-value=31 Score=30.90 Aligned_cols=57 Identities=12% Similarity=0.322 Sum_probs=43.0
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 108 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 108 ~ktp---e~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
+++| ++|-.+|+.|++- ...|...| +..+.-..+ |+....+.+...-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G-~l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKG-VLQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 5555 6677777777765 46899999 776644433 55678999999999999999763
No 79
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=45.90 E-value=13 Score=31.90 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhh
Q 005942 240 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFH 271 (668)
Q Consensus 240 ~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~ 271 (668)
.+.|+.|+.......|+|..| +|.|-..|..
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcC
Confidence 368999999998899999998 7999999974
No 80
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.21 E-value=16 Score=29.69 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
-|-.|++.....+...+|+.+.-..+ .+.+..++.|....|+..|||.-
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 35678877665432579999865444 25567899999999999999975
No 81
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=40.91 E-value=51 Score=25.59 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 523 KQFAEVETLLMRECEQVEKARQRFATERTRIVS 555 (668)
Q Consensus 523 k~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~ 555 (668)
+-.+--|.+|.+|| +||..|+.|..-|..--.
T Consensus 9 qEi~Aqe~iLr~Er-ELEeAr~~La~iR~~kY~ 40 (50)
T 2qdq_A 9 QIIAAQEEMLRKER-ELEEARKKLAQIRQQQYK 40 (50)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 34455577888887 799999999988776433
No 82
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=40.89 E-value=33 Score=29.86 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 109 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 109 ktpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
..-++|-.+|+.|++- ...|...| |..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 10 ~~~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp HHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 3356777777777764 35789999 887754444 4557899999999999999965
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=40.77 E-value=15 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.482 Sum_probs=32.3
Q ss_pred cCCCCCCCCCCCCc-----ceeecccCcCcccChhhhh----cCCCCCCCCCCCceec
Q 005942 239 SENHCNYCSQPIPA-----VYYQSQKEVDVLLCPECFH----EGRFVTGHSSLDYIRV 287 (668)
Q Consensus 239 ~~~~C~~C~~~~~~-----~~y~~~k~~d~~LC~~CF~----~G~~~~~hss~df~~v 287 (668)
....|..|+.++.. ++..|.+| .|-+|..||. +|+-.-..-...|.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeecc-CChhhHHHHHHHHhccCccccccCCccccc
Confidence 34689999988753 78889888 6889999995 3333322334455543
No 84
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=39.30 E-value=42 Score=32.61 Aligned_cols=39 Identities=8% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 005942 514 QLKRLELKLKQFAEVETLLMRECEQVE----KARQRFATERTRIVS 555 (668)
Q Consensus 514 QLkKLElKLk~feeLE~~le~Er~~LE----~~Rq~L~~eR~~~~~ 555 (668)
+|+.|+.++ ++||.-+.+|..+|| +.++-|+..|..+++
T Consensus 4 ~L~~iQ~e~---~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 4 DFEDIQKDI---EQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 345555443 445555666666665 457889999999998
No 85
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.50 E-value=38 Score=30.19 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 113 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 113 ~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
+.-.-|-.|++..... ...+|+.+.-..| .+.+..++.|...+|+..|||.=
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 3455688899988765 5689999975443 35568899999999999999975
No 86
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.37 E-value=27 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 005942 303 DQETFLLLEGIEMYNDNWNEIAEHVST 329 (668)
Q Consensus 303 ~~Eel~LLeaIe~~g~nW~~IAe~Vgt 329 (668)
.-|...+.++++.++||+.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 87
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.09 E-value=32 Score=30.91 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
-|-.|++....++...+|+.+.-..| .+.+..++.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46788888776543789999975443 34568899999999999999974
No 88
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=38.08 E-value=43 Score=34.00 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.3
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhhC
Q 005942 319 NWNEIAEHVSTKSKAQCILHFVRL 342 (668)
Q Consensus 319 nW~~IAe~VgtKT~~eCi~hFlqL 342 (668)
-|..||++..++|....+.+|..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 699999999999999999999865
No 89
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=37.80 E-value=47 Score=29.60 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 110 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 110 tpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
.-++|-.+|+.|+.- ...|...| +..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 13 ~~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 13 YLQLVDRIKNEVATD-VLSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 456777788877764 35789999 888765544 5567889999999999999955
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.39 E-value=1.3e+02 Score=33.00 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 527 EVETLLMRECEQVEKARQRFATERTRIV 554 (668)
Q Consensus 527 eLE~~le~Er~~LE~~Rq~L~~eR~~~~ 554 (668)
+||+.++..++++++.+|++-..|..+-
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666666677766666655555543
No 91
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=36.06 E-value=33 Score=30.86 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 110 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 110 tpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
.-++|-.+|+.|+.- ...|...| +..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 6 ~~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 6 YKQIASLIEDSIVDG-TLSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEE
Confidence 356788888888875 46799999 887755444 5557889999999999999965
No 92
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.33 E-value=33 Score=31.48 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
-|-.|++....++...+|+.+.-..| .+.+..++.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887766543689999975443 35568899999999999999974
No 93
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.94 E-value=2.3e+02 Score=24.18 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005942 488 AATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQ 544 (668)
Q Consensus 488 AA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq 544 (668)
+|.-..-|-.+|-.++..|-..+ +..|+...+.+++||+.+++-+..|....+
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444555555555544433 566777888888888888887776665544
No 94
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.45 E-value=2.7e+02 Score=24.89 Aligned_cols=14 Identities=14% Similarity=-0.054 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 005942 527 EVETLLMRECEQVE 540 (668)
Q Consensus 527 eLE~~le~Er~~LE 540 (668)
-+..=++.||..=|
T Consensus 73 IY~~DF~aERadRE 86 (110)
T 2v4h_A 73 IYKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhHH
Confidence 33344455554444
No 95
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=31.38 E-value=55 Score=26.40 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 118 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 118 RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
|..|+.....++ .+|+.+.-+.+ |.....+.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 677888776653 48998876665 55678999999999999999753
No 96
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.00 E-value=53 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 116 ECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 116 ~~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
.-|-.|++....++ ..+|+.+.-..| .+.+..++.|...+|+..|||.=
T Consensus 27 ~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 27 KQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 45778888887764 589999875443 34568899999999999999975
No 97
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=29.14 E-value=32 Score=30.63 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 107 PDHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 107 ~~ktpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
....-++|-.+|..|++- ...|...| +..+.-+.+ |+....+.+...-|+..|||-..
T Consensus 10 ~~~~~~i~~~l~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 10 RAIYLQIADRICDDILLG-QYEEEGRIPSVREYASIV-EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp --CTTHHHHHHHHHHHTT-SSCBTSEECCTTTTTTCC--CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEE
Confidence 345678999999999876 46789999 777654443 44568899999999999999663
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=28.24 E-value=66 Score=33.00 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHh--CCCCHHHHH
Q 005942 299 ETWSDQETFLLLEGIEMYN---DNWNEIAEHV--STKSKAQCI 336 (668)
Q Consensus 299 ~~WT~~Eel~LLeaIe~~g---~nW~~IAe~V--gtKT~~eCi 336 (668)
..||+.|...|+.++.+|| +.|+.|+..- ..|+.+...
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~ 46 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYG 46 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHH
Confidence 5799999999999999999 6899998764 257764433
No 99
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.86 E-value=1.9e+02 Score=24.49 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005942 515 LKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTR 557 (668)
Q Consensus 515 LkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~r 557 (668)
+.|||.|++..=+.=++|..|-++|......|..+...+...|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 100
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=27.79 E-value=75 Score=29.43 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHH
Q 005942 240 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 310 (668)
Q Consensus 240 ~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LL 310 (668)
-..|.-|+.. .+.+.+.. ..+.+|.+|-.--+.-+.| .+++ . ..-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~Vr--S------l~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVK--S------ISMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEE--E------TTTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceee--e------cCCCCCCHHHHHHHH
Confidence 4579989874 44454443 4678999998644432223 3333 1 122579997765544
No 101
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.58 E-value=2.4e+02 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005942 508 ANIINHQLKRLELKLKQFAEVETLLMRECEQVEKA 542 (668)
Q Consensus 508 ~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~ 542 (668)
..+++.+++.|+.+++.++.+...|+.-....+..
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888888877777777776655444443
No 102
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=25.60 E-value=1.6e+02 Score=29.13 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 005942 526 AEVETLLMRECEQVE----KARQRFATERTRIVS 555 (668)
Q Consensus 526 eeLE~~le~Er~~LE----~~Rq~L~~eR~~~~~ 555 (668)
++||.-..+|..+|| +.++-||..|..+++
T Consensus 43 ~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~ 76 (225)
T 2e50_A 43 DRLNEQASEEILKVEQKYNKLRQPFFQKRSELIA 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHh
Confidence 344444444444444 567789999999884
No 103
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.38 E-value=2.6e+02 Score=23.87 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005942 528 VETLLMRECEQVEKARQRFATERTRIV 554 (668)
Q Consensus 528 LE~~le~Er~~LE~~Rq~L~~eR~~~~ 554 (668)
+..+++.|-+.|-++=..+..++.++.
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444444444444443
No 104
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.58 E-value=74 Score=28.85 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 005942 117 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 117 ~RN~iI~~yr~np~eyLT~t~cr~~L----~gddv~~i~RVH~FLE~WGLINY 165 (668)
-|-.|++..... ...+|+.+.-..| .+.+..++.|...+|+..|||.-
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 466788877664 5689998874433 34568899999999999999975
No 105
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=24.17 E-value=38 Score=33.33 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 005942 108 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 166 (668)
Q Consensus 108 ~ktpe~Y~~~RN~iI~~yr~np~eyLT~t~cr~~L~gddv~~i~RVH~FLE~WGLINYq 166 (668)
+..+.+|-.+|+.|+.- ...|...|+..+--..+ |+.-..+.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 55678999999999986 46799999888865544 56678899999999999999873
No 106
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.42 E-value=55 Score=30.39 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=48.2
Q ss_pred cCCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-
Q 005942 239 SENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN- 317 (668)
Q Consensus 239 ~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hss~df~~vd~~~~~~~~~~~~WT~~Eel~LLeaIe~~g- 317 (668)
.-..|.-|+.. .+.+-+.. ..+.+|.+|-.--+.-+.| ..+|.. ..-+.||.+|...|.. + |
T Consensus 28 ~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~h----iS~VkS------l~ld~w~~~~l~~m~~-~---GN 90 (141)
T 2crr_A 28 DNKYCADCEAK--GPRWASWN-IGVFICIRCAGIHRNLGVH----ISRVKS------VNLDQWTAEQIQCMQD-M---GN 90 (141)
T ss_dssp GGSSCSSSCCS--SCCSEETT-TTEECCHHHHHHHHHHCTT----TCCCBC------SSSSCCCHHHHHHHHH-T---HH
T ss_pred cCCcCCCCCCC--CCCeEEec-cCeEEhhhhhHhHhcCCCC----CCeeeE------CCCCCCCHHHHHHHHH-H---cc
Confidence 34579989875 34444433 3678999997543322222 223332 1235799977655543 2 2
Q ss_pred CCHHHHHH-HhC----CCCHHHHHHHHhhC-CCCCCCcc
Q 005942 318 DNWNEIAE-HVS----TKSKAQCILHFVRL-PMEDGILE 350 (668)
Q Consensus 318 ~nW~~IAe-~Vg----tKT~~eCi~hFlqL-PIeD~fL~ 350 (668)
...+.|=+ ++. .-++++-+..||+- |++..|..
T Consensus 91 ~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~ 129 (141)
T 2crr_A 91 TKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYD 129 (141)
T ss_dssp HHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccC
Confidence 11122111 111 12345566777763 55555654
No 107
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.86 E-value=18 Score=39.49 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005942 512 NHQLKRLELKL-KQFAEVETLLMRECEQVEKARQRFATERTRIVSTR 557 (668)
Q Consensus 512 e~QLkKLElKL-k~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~r 557 (668)
+..|++.|..| ..+++|.+.++.|++.||.+|++|-.|+..+-+.+
T Consensus 354 e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 400 (427)
T 2qag_B 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRK 400 (427)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555 35667777888888888888888888888765553
No 108
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.84 E-value=95 Score=25.27 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=31.8
Q ss_pred cCCCCCCCCCCCCcceeecccCcCcccChhhhhcCCCCCCCC-CCCceecCC
Q 005942 239 SENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVDP 289 (668)
Q Consensus 239 ~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G~~~~~hs-s~df~~vd~ 289 (668)
....|..|.+.+.-+-|.| .|.. ..|.. -+++..|. +.||.....
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~-~FC~~----HRy~e~H~C~fDyk~~gr 59 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGT-TFCGS----HRYPEVHGCTFDFKSAGS 59 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSC-EECTT----TCSTTTTTCCCCCSCCCC
T ss_pred cCCcChhhCCccCccCEEe-ecCC-Eeccc----cCCcccCCCCchhhHHHH
Confidence 3478999999887777888 5643 34543 47888887 778876543
No 109
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.49 E-value=74 Score=28.11 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 005942 109 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 165 (668)
Q Consensus 109 ktpe~Y~~~RN~iI~~yr~np~eyL-T~t~cr~~L~gddv~~i~RVH~FLE~WGLINY 165 (668)
..-++|-.+|+.|++- ...|...| |..+.-+.+ |+....+.+...-|+.-|||--
T Consensus 14 ~~~~i~~~i~~~I~~g-~~~~g~~Lps~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~ 69 (125)
T 3neu_A 14 IYSQISDWMKKQMITG-EWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYA 69 (125)
T ss_dssp HHHHHHHHHHHHHHTT-SSCTTCBCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhC-CCCCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCeEEE
Confidence 4456777777777654 35689999 577755444 5567899999999999999966
No 110
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=21.73 E-value=1.5e+02 Score=24.76 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005942 485 LAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLG 559 (668)
Q Consensus 485 L~aAA~kAk~lA~~EErEI~rLv~~iIe~QLkKLElKLk~feeLE~~le~Er~~LE~~Rq~L~~eR~~~~~~rl~ 559 (668)
|+..++|....+|.|.||.-..+ +..++|+=.=|+.|+- ..+.--..| ..|-+-+.-++.++.+++.
T Consensus 3 ~~s~~~~~~iq~DW~nRe~ie~i----s~~I~~~v~FLN~F~~---sce~KLa~l-n~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 3 LGSMSTKTNIQKDWEQREFIEDM----SINIQKIVEFLNKFEL---STRNKLSDL-NEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp -----CCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 56677888889999999976554 4555565554555542 221111111 1233444555666666654
No 111
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.22 E-value=49 Score=31.00 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=21.5
Q ss_pred ccCCCCCCCCCCCCcceeecccCcCcccChhhhhcC
Q 005942 238 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEG 273 (668)
Q Consensus 238 ~~~~~C~~C~~~~~~~~y~~~k~~d~~LC~~CF~~G 273 (668)
..-..|.-|+.. .+.+-+.. ..+.+|.+|-.--
T Consensus 35 p~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiH 67 (144)
T 2p57_A 35 PTNKACFDCGAK--NPSWASIT-YGVFLCIDCSGVH 67 (144)
T ss_dssp GGGGBCTTTCCB--SCCEEEGG-GTEEECHHHHHHH
T ss_pred CCCCcCCCCcCC--CCCeEEec-cCEEEhhhchHHH
Confidence 344679999865 34444443 3678999997643
No 112
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.10 E-value=79 Score=26.50 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHhCC
Q 005942 300 TWSDQETFLLLEGIEMYNDNWNEIAEHVST 329 (668)
Q Consensus 300 ~WT~~Eel~LLeaIe~~g~nW~~IAe~Vgt 329 (668)
.+..-|...|.++++.++||+.+.|+.+|-
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 344567788899999999999999999983
No 113
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=20.80 E-value=80 Score=23.26 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHH
Q 005942 513 HQLKRLELKLKQFA-EVETLLMRECE 537 (668)
Q Consensus 513 ~QLkKLElKLk~fe-eLE~~le~Er~ 537 (668)
.|||.=--||+++. .+|.++++|++
T Consensus 12 L~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 12 LQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 36777778888888 89999988875
Done!