Query 005943
Match_columns 668
No_of_seqs 554 out of 3251
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 16:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-91 2.3E-96 769.4 68.9 640 1-668 84-735 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.4E-75 7.3E-80 639.2 60.3 567 1-656 49-621 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1E-71 2.3E-76 596.9 56.8 487 67-668 85-572 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1E-68 2.2E-73 574.2 57.0 538 2-592 369-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4E-65 8.6E-70 546.6 52.9 530 67-656 368-911 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-62 2.6E-67 527.1 48.7 471 34-557 83-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-34 1.8E-38 320.9 62.6 612 11-653 269-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-32 3E-37 310.9 63.3 623 2-659 226-871 (899)
9 PRK11447 cellulose synthase su 100.0 8.7E-25 1.9E-29 246.6 63.7 612 5-653 30-739 (1157)
10 PRK11447 cellulose synthase su 99.9 1.2E-22 2.6E-27 229.3 56.7 568 41-656 31-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 7.6E-21 1.6E-25 204.5 58.6 605 14-652 55-738 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3.6E-20 7.8E-25 199.4 55.8 544 48-656 54-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-19 4.2E-24 171.6 34.3 382 200-643 115-508 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.5E-18 1.2E-22 179.8 42.6 422 203-655 129-572 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 4.9E-19 1.1E-23 168.9 27.4 427 204-659 51-490 (966)
16 KOG2002 TPR-containing nuclear 99.8 3.3E-16 7.1E-21 157.9 44.3 578 19-656 146-800 (1018)
17 PRK11788 tetratricopeptide rep 99.8 1.4E-18 3E-23 175.4 27.6 290 365-660 44-354 (389)
18 KOG4422 Uncharacterized conser 99.8 1.1E-16 2.4E-21 146.3 34.4 426 5-485 118-589 (625)
19 PRK11788 tetratricopeptide rep 99.8 2E-17 4.3E-22 167.0 29.9 294 291-619 42-346 (389)
20 PRK10049 pgaA outer membrane p 99.8 2.7E-16 5.9E-21 169.9 39.8 401 246-659 14-461 (765)
21 PRK15174 Vi polysaccharide exp 99.8 3.3E-16 7.2E-21 165.5 37.2 358 257-625 15-386 (656)
22 PRK14574 hmsH outer membrane p 99.8 3.3E-15 7.1E-20 158.1 43.9 451 72-628 38-521 (822)
23 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-15 3.9E-20 160.7 41.7 249 370-625 308-576 (615)
24 KOG2002 TPR-containing nuclear 99.8 1E-14 2.2E-19 147.3 44.0 558 54-659 146-750 (1018)
25 PRK10049 pgaA outer membrane p 99.8 5E-15 1.1E-19 160.2 44.1 406 199-629 13-465 (765)
26 KOG2003 TPR repeat-containing 99.8 2.7E-16 5.8E-21 144.9 27.9 280 364-649 427-717 (840)
27 PRK15174 Vi polysaccharide exp 99.8 8.8E-16 1.9E-20 162.3 34.6 352 295-656 16-383 (656)
28 PRK14574 hmsH outer membrane p 99.8 1.8E-13 3.8E-18 145.1 46.5 438 46-596 42-522 (822)
29 KOG4422 Uncharacterized conser 99.7 1.9E-14 4.1E-19 131.9 33.7 440 69-585 116-587 (625)
30 KOG2076 RNA polymerase III tra 99.7 5.3E-13 1.1E-17 134.3 44.2 572 11-638 147-787 (895)
31 KOG0495 HAT repeat protein [RN 99.7 1.4E-10 3E-15 112.7 53.3 445 196-664 435-889 (913)
32 KOG2076 RNA polymerase III tra 99.7 2.5E-12 5.3E-17 129.6 40.6 535 49-659 150-774 (895)
33 KOG4318 Bicoid mRNA stability 99.7 5.6E-13 1.2E-17 133.4 35.2 536 24-656 11-596 (1088)
34 KOG4318 Bicoid mRNA stability 99.7 3.3E-12 7.1E-17 128.0 37.9 280 357-656 492-810 (1088)
35 KOG0495 HAT repeat protein [RN 99.6 2.7E-10 6E-15 110.8 47.1 392 254-656 413-848 (913)
36 PF13429 TPR_15: Tetratricopep 99.6 9.1E-16 2E-20 146.1 9.3 254 394-652 15-275 (280)
37 KOG2003 TPR repeat-containing 99.6 2.2E-12 4.7E-17 119.5 27.5 433 204-654 204-689 (840)
38 KOG0547 Translocase of outer m 99.6 1.2E-11 2.6E-16 116.0 30.1 212 435-652 339-564 (606)
39 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.2E-17 127.1 21.7 277 371-657 334-623 (638)
40 PRK10747 putative protoheme IX 99.5 8.9E-12 1.9E-16 124.3 26.7 275 369-653 97-389 (398)
41 KOG1915 Cell cycle control pro 99.5 4.2E-09 9.1E-14 98.8 41.4 464 68-619 72-584 (677)
42 KOG1915 Cell cycle control pro 99.5 9.7E-10 2.1E-14 103.0 35.5 426 200-653 106-584 (677)
43 KOG1155 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 108.5 28.1 346 247-648 164-530 (559)
44 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.4E-16 121.1 21.7 278 338-626 336-626 (638)
45 PRK10747 putative protoheme IX 99.5 6.6E-11 1.4E-15 118.1 27.3 223 364-621 161-391 (398)
46 KOG1173 Anaphase-promoting com 99.4 7.1E-10 1.5E-14 106.4 32.0 252 396-653 253-517 (611)
47 KOG1155 Anaphase-promoting com 99.4 1.6E-09 3.5E-14 101.4 33.1 252 394-653 234-494 (559)
48 TIGR00540 hemY_coli hemY prote 99.4 1.6E-10 3.4E-15 116.1 27.8 281 368-653 96-398 (409)
49 KOG0547 Translocase of outer m 99.4 4.6E-09 1E-13 99.0 34.7 219 398-623 337-569 (606)
50 PF13429 TPR_15: Tetratricopep 99.4 5.1E-13 1.1E-17 127.3 8.8 230 427-659 13-248 (280)
51 TIGR00540 hemY_coli hemY prote 99.4 9.3E-10 2E-14 110.5 32.1 251 363-619 125-398 (409)
52 KOG2047 mRNA splicing factor [ 99.4 2.4E-08 5.2E-13 97.4 39.5 542 39-649 103-718 (835)
53 TIGR02521 type_IV_pilW type IV 99.4 1.1E-10 2.3E-15 108.8 21.5 198 456-654 30-232 (234)
54 COG3071 HemY Uncharacterized e 99.4 2.6E-09 5.7E-14 98.5 28.7 286 297-619 97-389 (400)
55 COG2956 Predicted N-acetylgluc 99.4 8.9E-10 1.9E-14 98.3 24.4 217 296-516 47-277 (389)
56 KOG0985 Vesicle coat protein c 99.3 2.3E-07 4.9E-12 95.2 43.7 470 112-647 845-1376(1666)
57 COG3071 HemY Uncharacterized e 99.3 3.2E-09 7E-14 97.9 25.7 276 369-652 97-388 (400)
58 COG2956 Predicted N-acetylgluc 99.3 1.4E-09 3.1E-14 97.0 21.5 283 370-656 49-349 (389)
59 KOG3785 Uncharacterized conser 99.3 7.5E-08 1.6E-12 87.2 31.7 84 45-130 29-116 (557)
60 KOG1129 TPR repeat-containing 99.3 2.9E-10 6.4E-15 101.2 16.3 226 391-656 227-460 (478)
61 KOG2376 Signal recognition par 99.3 1.2E-07 2.7E-12 91.9 34.8 409 204-652 49-518 (652)
62 KOG1840 Kinesin light chain [C 99.2 3.5E-09 7.5E-14 105.1 24.9 231 422-652 199-477 (508)
63 KOG4162 Predicted calmodulin-b 99.2 1.4E-07 3.1E-12 94.4 35.8 427 191-666 313-795 (799)
64 PF13041 PPR_2: PPR repeat fam 99.2 1.5E-11 3.3E-16 81.2 5.7 50 282-331 1-50 (50)
65 PF13041 PPR_2: PPR repeat fam 99.2 3.6E-11 7.9E-16 79.4 6.8 50 486-535 1-50 (50)
66 KOG2047 mRNA splicing factor [ 99.2 4.4E-06 9.5E-11 82.2 46.5 553 10-621 109-720 (835)
67 KOG1174 Anaphase-promoting com 99.2 4E-07 8.6E-12 84.4 34.2 317 314-636 189-516 (564)
68 KOG1173 Anaphase-promoting com 99.2 9.2E-08 2E-12 92.3 29.6 281 351-635 239-533 (611)
69 KOG2376 Signal recognition par 99.2 3.7E-07 8E-12 88.7 33.4 462 6-550 15-518 (652)
70 PRK12370 invasion protein regu 99.2 6.8E-09 1.5E-13 108.5 23.2 245 402-656 276-537 (553)
71 COG3063 PilF Tfp pilus assembl 99.1 4.3E-09 9.4E-14 89.7 16.7 161 491-656 38-204 (250)
72 TIGR02521 type_IV_pilW type IV 99.1 1.2E-08 2.6E-13 94.9 21.3 196 388-622 32-234 (234)
73 PRK12370 invasion protein regu 99.1 7E-09 1.5E-13 108.4 21.1 213 436-656 275-504 (553)
74 KOG3616 Selective LIM binding 99.1 8.4E-07 1.8E-11 88.2 33.3 193 429-648 739-931 (1636)
75 KOG3785 Uncharacterized conser 99.1 1.3E-06 2.9E-11 79.3 31.8 449 76-595 29-498 (557)
76 KOG3616 Selective LIM binding 99.1 5.6E-06 1.2E-10 82.5 38.7 133 6-157 735-867 (1636)
77 PRK11189 lipoprotein NlpI; Pro 99.1 4.1E-09 8.9E-14 100.5 16.8 218 399-624 38-269 (296)
78 KOG1129 TPR repeat-containing 99.1 1.6E-09 3.4E-14 96.7 12.2 233 357-627 224-465 (478)
79 KOG0985 Vesicle coat protein c 99.1 2.4E-05 5.2E-10 81.1 42.5 233 387-649 1104-1336(1666)
80 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.6E-11 85.3 33.0 384 199-666 73-486 (700)
81 PF12569 NARP1: NMDA receptor- 99.0 1.6E-06 3.4E-11 87.7 33.1 415 208-650 11-516 (517)
82 PF12569 NARP1: NMDA receptor- 99.0 1.1E-07 2.5E-12 95.8 22.8 259 363-656 11-293 (517)
83 KOG4340 Uncharacterized conser 99.0 1.5E-06 3.2E-11 77.2 26.4 420 196-653 5-442 (459)
84 PF04733 Coatomer_E: Coatomer 99.0 2.4E-08 5.1E-13 93.7 15.5 251 363-625 8-270 (290)
85 KOG1127 TPR repeat-containing 99.0 4E-06 8.8E-11 86.6 32.0 582 18-654 473-1104(1238)
86 KOG1174 Anaphase-promoting com 98.9 9E-06 2E-10 75.7 30.9 297 352-656 190-502 (564)
87 PRK11189 lipoprotein NlpI; Pro 98.9 4E-07 8.8E-12 86.9 23.3 217 436-661 40-273 (296)
88 KOG1840 Kinesin light chain [C 98.9 1.1E-07 2.3E-12 94.7 19.3 235 357-619 200-478 (508)
89 KOG4162 Predicted calmodulin-b 98.9 9.7E-06 2.1E-10 81.7 31.6 398 200-626 356-789 (799)
90 KOG1156 N-terminal acetyltrans 98.9 0.00012 2.6E-09 72.7 42.3 587 6-656 11-690 (700)
91 COG3063 PilF Tfp pilus assembl 98.9 4.2E-07 9.1E-12 77.8 18.6 192 461-654 39-236 (250)
92 PF04733 Coatomer_E: Coatomer 98.8 3.1E-07 6.6E-12 86.2 18.1 219 362-590 41-268 (290)
93 KOG4340 Uncharacterized conser 98.8 4E-05 8.6E-10 68.3 27.4 59 72-133 13-72 (459)
94 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.9E-10 72.7 24.9 310 252-628 43-378 (504)
95 KOG0624 dsRNA-activated protei 98.7 6.4E-06 1.4E-10 74.7 22.7 289 362-656 44-372 (504)
96 cd05804 StaR_like StaR_like; a 98.7 9.4E-06 2E-10 80.8 27.2 258 395-655 51-337 (355)
97 KOG3617 WD40 and TPR repeat-co 98.7 2.4E-05 5.1E-10 79.3 28.7 395 67-586 724-1172(1416)
98 KOG0548 Molecular co-chaperone 98.7 3.7E-05 8.1E-10 74.5 29.0 237 390-638 227-473 (539)
99 KOG3617 WD40 and TPR repeat-co 98.7 0.00046 1E-08 70.4 42.0 239 48-346 738-992 (1416)
100 KOG1125 TPR repeat-containing 98.7 2E-07 4.3E-12 90.5 13.4 215 434-654 297-527 (579)
101 PF12854 PPR_1: PPR repeat 98.7 1.7E-08 3.8E-13 59.4 3.9 34 195-228 1-34 (34)
102 TIGR03302 OM_YfiO outer membra 98.7 6.2E-07 1.4E-11 83.2 16.4 179 457-655 33-233 (235)
103 PRK15359 type III secretion sy 98.6 4.7E-07 1E-11 75.7 11.4 103 529-634 30-135 (144)
104 KOG1070 rRNA processing protei 98.6 3.1E-06 6.7E-11 90.4 18.9 197 456-656 1457-1665(1710)
105 PRK10370 formate-dependent nit 98.6 4.5E-06 9.8E-11 73.9 17.0 119 536-656 52-175 (198)
106 KOG1127 TPR repeat-containing 98.6 0.00051 1.1E-08 71.8 32.4 182 52-312 472-658 (1238)
107 PRK15359 type III secretion sy 98.6 1.6E-06 3.5E-11 72.5 12.6 111 544-659 14-126 (144)
108 PRK04841 transcriptional regul 98.5 7.2E-05 1.6E-09 84.8 29.9 295 361-655 414-761 (903)
109 cd05804 StaR_like StaR_like; a 98.5 0.00015 3.3E-09 72.2 29.0 265 388-655 7-294 (355)
110 PF12854 PPR_1: PPR repeat 98.5 7.7E-08 1.7E-12 56.7 3.1 34 32-65 1-34 (34)
111 KOG1128 Uncharacterized conser 98.5 4.2E-06 9.1E-11 83.7 16.5 217 351-585 393-613 (777)
112 PRK15179 Vi polysaccharide bio 98.5 1.1E-05 2.4E-10 84.9 18.8 129 488-621 86-218 (694)
113 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.2E-10 70.2 16.4 154 492-648 70-225 (257)
114 KOG0548 Molecular co-chaperone 98.4 0.00016 3.4E-09 70.3 24.4 101 12-115 11-114 (539)
115 KOG1128 Uncharacterized conser 98.4 6.3E-06 1.4E-10 82.5 15.4 210 428-656 404-618 (777)
116 PLN02789 farnesyltranstransfer 98.4 5.5E-05 1.2E-09 72.2 21.2 187 465-655 79-303 (320)
117 PRK04841 transcriptional regul 98.4 0.00043 9.3E-09 78.5 32.2 364 252-624 346-764 (903)
118 PRK10370 formate-dependent nit 98.4 2.1E-05 4.5E-10 69.8 16.6 154 464-629 23-182 (198)
119 KOG1914 mRNA cleavage and poly 98.4 0.0027 5.9E-08 62.0 36.8 174 403-577 347-528 (656)
120 COG5010 TadD Flp pilus assembl 98.3 6.2E-05 1.3E-09 66.4 17.5 150 463-616 72-227 (257)
121 KOG1914 mRNA cleavage and poly 98.3 0.004 8.6E-08 60.9 33.7 398 246-654 19-501 (656)
122 TIGR02552 LcrH_SycD type III s 98.3 1E-05 2.2E-10 67.5 11.8 96 561-656 19-116 (135)
123 KOG3081 Vesicle coat complex C 98.3 0.00016 3.5E-09 63.8 18.4 245 394-654 15-271 (299)
124 TIGR03302 OM_YfiO outer membra 98.3 2.4E-05 5.1E-10 72.6 14.6 182 419-622 30-234 (235)
125 KOG3081 Vesicle coat complex C 98.3 0.00073 1.6E-08 59.8 22.1 155 464-625 115-276 (299)
126 KOG1125 TPR repeat-containing 98.3 0.00018 3.8E-09 70.6 20.2 222 46-311 293-525 (579)
127 KOG1070 rRNA processing protei 98.3 0.00014 3E-09 78.5 21.1 225 420-648 1456-1694(1710)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.9E-05 4.1E-10 76.7 13.7 122 526-652 172-295 (395)
129 PLN02789 farnesyltranstransfer 98.2 0.0001 2.3E-09 70.3 18.1 191 462-656 42-252 (320)
130 COG4783 Putative Zn-dependent 98.2 0.00012 2.6E-09 70.4 17.8 136 499-655 317-455 (484)
131 COG4783 Putative Zn-dependent 98.2 0.00021 4.4E-09 68.9 19.1 114 535-650 318-433 (484)
132 PRK15363 pathogenicity island 98.2 2E-05 4.3E-10 64.6 10.5 98 558-655 34-133 (157)
133 KOG3060 Uncharacterized conser 98.2 0.0002 4.2E-09 62.7 16.9 190 435-627 25-227 (289)
134 PRK14720 transcript cleavage f 98.1 0.00035 7.7E-09 74.6 21.4 237 355-643 30-273 (906)
135 KOG3060 Uncharacterized conser 98.1 0.00019 4.2E-09 62.8 15.5 183 470-656 25-222 (289)
136 PRK15179 Vi polysaccharide bio 98.1 0.00043 9.2E-09 73.3 21.1 143 452-598 81-229 (694)
137 KOG2053 Mitochondrial inherita 98.1 0.019 4.1E-07 60.0 41.3 134 12-152 18-156 (932)
138 TIGR02552 LcrH_SycD type III s 98.0 0.00011 2.3E-09 61.2 12.7 115 510-628 5-122 (135)
139 PF13432 TPR_16: Tetratricopep 98.0 1.2E-05 2.6E-10 56.7 5.7 61 597-657 3-63 (65)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 8.7E-05 1.9E-09 72.3 13.3 127 459-589 171-298 (395)
141 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.1E-05 1.8E-09 60.4 11.1 96 561-656 4-107 (119)
142 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.5E-10 48.4 4.4 34 285-318 1-34 (35)
143 cd00189 TPR Tetratricopeptide 98.0 7E-05 1.5E-09 57.8 10.1 95 561-655 2-98 (100)
144 PRK14720 transcript cleavage f 98.0 0.00046 1E-08 73.8 18.7 145 494-656 89-254 (906)
145 PF13414 TPR_11: TPR repeat; P 98.0 2.6E-05 5.6E-10 55.8 6.7 66 590-655 2-68 (69)
146 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 48.1 4.4 33 490-522 2-34 (35)
147 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3.1E-10 47.5 4.3 33 489-521 2-34 (34)
148 PF04840 Vps16_C: Vps16, C-ter 98.0 0.02 4.3E-07 54.7 27.4 107 461-584 181-287 (319)
149 PF09976 TPR_21: Tetratricopep 97.9 0.00022 4.8E-09 60.0 12.7 52 598-650 92-143 (145)
150 PF12895 Apc3: Anaphase-promot 97.9 1.2E-05 2.7E-10 60.1 4.5 78 572-650 2-83 (84)
151 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.6E-10 47.2 4.3 33 106-138 2-34 (34)
152 PF09976 TPR_21: Tetratricopep 97.9 0.0007 1.5E-08 56.9 14.8 124 491-617 15-144 (145)
153 PLN03088 SGT1, suppressor of 97.8 0.00026 5.6E-09 69.4 11.6 107 529-638 8-117 (356)
154 COG4235 Cytochrome c biogenesi 97.7 0.00023 4.9E-09 64.7 9.6 109 556-664 153-267 (287)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00036 7.8E-09 56.5 10.0 104 525-628 4-113 (119)
156 PF08579 RPM2: Mitochondrial r 97.7 0.0003 6.5E-09 53.3 8.4 82 71-152 27-116 (120)
157 PRK02603 photosystem I assembl 97.7 0.00048 1E-08 59.9 11.2 98 559-656 35-151 (172)
158 PF14559 TPR_19: Tetratricopep 97.7 5.9E-05 1.3E-09 53.7 4.4 55 602-656 2-56 (68)
159 PRK10153 DNA-binding transcrip 97.7 0.00067 1.5E-08 69.5 13.5 138 486-625 335-487 (517)
160 KOG2053 Mitochondrial inherita 97.6 0.12 2.5E-06 54.4 38.5 64 593-656 438-504 (932)
161 PF08579 RPM2: Mitochondrial r 97.6 0.00069 1.5E-08 51.4 9.4 88 109-214 29-117 (120)
162 PF13371 TPR_9: Tetratricopept 97.6 0.00018 3.8E-09 52.2 6.3 58 599-656 3-60 (73)
163 KOG0550 Molecular chaperone (D 97.6 0.0011 2.4E-08 62.4 12.7 162 489-656 169-352 (486)
164 CHL00033 ycf3 photosystem I as 97.6 0.00065 1.4E-08 58.9 10.8 94 558-651 34-139 (168)
165 PF14938 SNAP: Soluble NSF att 97.6 0.071 1.5E-06 50.7 25.5 96 491-586 158-264 (282)
166 PF07079 DUF1347: Protein of u 97.6 0.08 1.7E-06 51.1 32.8 417 211-651 16-521 (549)
167 PRK10866 outer membrane biogen 97.6 0.0067 1.5E-07 55.7 17.2 171 464-653 39-240 (243)
168 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.5E-08 61.5 13.5 135 489-626 2-142 (280)
169 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.3E-09 42.5 3.5 30 286-315 2-31 (31)
170 KOG1538 Uncharacterized conser 97.6 0.03 6.6E-07 56.1 21.8 26 198-223 553-578 (1081)
171 KOG0553 TPR repeat-containing 97.5 0.00063 1.4E-08 61.5 9.7 101 495-600 88-191 (304)
172 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 42.3 3.5 30 490-519 2-31 (31)
173 PF06239 ECSIT: Evolutionarily 97.5 0.00075 1.6E-08 58.2 9.4 100 57-157 33-155 (228)
174 PF04840 Vps16_C: Vps16, C-ter 97.5 0.092 2E-06 50.3 26.0 82 359-446 180-261 (319)
175 KOG0553 TPR repeat-containing 97.5 0.00035 7.5E-09 63.1 7.7 109 531-642 89-200 (304)
176 PF06239 ECSIT: Evolutionarily 97.5 0.0009 1.9E-08 57.7 9.8 114 103-227 45-165 (228)
177 PLN03088 SGT1, suppressor of 97.5 0.0013 2.9E-08 64.5 12.4 103 494-600 8-112 (356)
178 KOG2280 Vacuolar assembly/sort 97.5 0.17 3.6E-06 52.2 27.6 328 288-649 441-794 (829)
179 cd00189 TPR Tetratricopeptide 97.4 0.0012 2.6E-08 50.7 9.4 91 530-622 7-99 (100)
180 PF13432 TPR_16: Tetratricopep 97.4 0.00044 9.6E-09 48.6 6.1 61 565-625 3-65 (65)
181 PRK10153 DNA-binding transcrip 97.4 0.0038 8.2E-08 64.1 15.1 142 519-664 333-492 (517)
182 COG4700 Uncharacterized protei 97.4 0.023 5E-07 47.6 16.2 131 519-652 85-220 (251)
183 PF14938 SNAP: Soluble NSF att 97.4 0.0061 1.3E-07 57.9 15.3 114 460-585 97-222 (282)
184 PF12895 Apc3: Anaphase-promot 97.4 0.00043 9.2E-09 51.7 5.8 80 501-584 2-83 (84)
185 PRK15331 chaperone protein Sic 97.4 0.0018 3.9E-08 53.6 9.6 90 564-653 42-133 (165)
186 PF10037 MRP-S27: Mitochondria 97.4 0.0039 8.4E-08 61.3 13.7 121 416-536 60-186 (429)
187 PRK02603 photosystem I assembl 97.4 0.004 8.8E-08 54.1 12.5 129 488-640 35-166 (172)
188 PF10037 MRP-S27: Mitochondria 97.3 0.0021 4.5E-08 63.1 11.3 121 247-369 66-186 (429)
189 PF05843 Suf: Suppressor of fo 97.3 0.0018 3.9E-08 61.2 10.4 130 524-655 2-137 (280)
190 PF13431 TPR_17: Tetratricopep 97.3 0.00021 4.5E-09 42.0 2.2 33 614-646 2-34 (34)
191 PRK10803 tol-pal system protei 97.3 0.0024 5.1E-08 59.1 10.1 96 526-624 146-250 (263)
192 PF14559 TPR_19: Tetratricopep 97.2 0.00054 1.2E-08 48.7 4.4 48 535-585 3-51 (68)
193 COG3898 Uncharacterized membra 97.2 0.22 4.7E-06 47.3 24.1 271 369-653 97-391 (531)
194 CHL00033 ycf3 photosystem I as 97.1 0.0071 1.5E-07 52.4 11.5 61 490-550 37-99 (168)
195 COG3898 Uncharacterized membra 97.1 0.25 5.5E-06 46.8 23.2 255 389-652 84-356 (531)
196 PRK15363 pathogenicity island 97.1 0.019 4.2E-07 47.4 12.4 94 487-585 34-129 (157)
197 PF09205 DUF1955: Domain of un 97.0 0.063 1.4E-06 42.2 13.9 141 498-657 12-152 (161)
198 PF13414 TPR_11: TPR repeat; P 97.0 0.0019 4E-08 46.1 5.5 65 558-622 2-69 (69)
199 PF12688 TPR_5: Tetratrico pep 97.0 0.014 3.1E-07 46.4 10.6 88 530-618 8-102 (120)
200 KOG2041 WD40 repeat protein [G 97.0 0.29 6.4E-06 50.0 21.6 55 199-273 850-904 (1189)
201 PF13281 DUF4071: Domain of un 96.9 0.11 2.4E-06 50.2 18.0 160 462-624 146-338 (374)
202 PF07079 DUF1347: Protein of u 96.9 0.47 1E-05 46.1 34.1 457 48-596 16-530 (549)
203 COG4700 Uncharacterized protei 96.9 0.021 4.6E-07 47.8 11.2 106 550-655 80-190 (251)
204 PF12688 TPR_5: Tetratrico pep 96.9 0.023 5E-07 45.2 11.1 107 494-601 7-116 (120)
205 PF13428 TPR_14: Tetratricopep 96.9 0.0021 4.6E-08 40.6 4.4 42 592-633 2-43 (44)
206 PRK10803 tol-pal system protei 96.8 0.012 2.5E-07 54.7 10.5 96 561-656 145-248 (263)
207 KOG0550 Molecular chaperone (D 96.8 0.33 7.1E-06 46.5 19.3 86 465-552 257-350 (486)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0065 1.4E-07 59.2 8.7 96 558-656 74-176 (453)
209 PRK10866 outer membrane biogen 96.8 0.096 2.1E-06 48.2 16.1 64 247-314 32-99 (243)
210 KOG1538 Uncharacterized conser 96.7 0.12 2.5E-06 52.2 16.6 252 103-409 554-826 (1081)
211 PF13371 TPR_9: Tetratricopept 96.7 0.0076 1.6E-07 43.5 6.7 65 567-631 3-69 (73)
212 PF13424 TPR_12: Tetratricopep 96.7 0.0036 7.8E-08 45.9 4.9 62 592-653 6-74 (78)
213 KOG2280 Vacuolar assembly/sort 96.6 1.1 2.3E-05 46.7 32.2 137 194-348 425-573 (829)
214 PF13525 YfiO: Outer membrane 96.6 0.11 2.3E-06 46.6 14.6 50 597-646 147-199 (203)
215 KOG1130 Predicted G-alpha GTPa 96.6 0.016 3.4E-07 54.8 9.2 129 525-653 197-343 (639)
216 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.97 2.1E-05 44.0 24.8 80 199-294 40-119 (660)
217 KOG2796 Uncharacterized conser 96.3 0.19 4E-06 45.0 13.9 137 389-527 179-323 (366)
218 PRK11619 lytic murein transgly 96.3 2.1 4.5E-05 45.8 28.4 73 361-435 104-176 (644)
219 PF03704 BTAD: Bacterial trans 96.3 0.022 4.8E-07 47.9 8.1 61 593-653 64-124 (146)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.3 2.8E-05 43.2 31.1 133 488-624 397-535 (660)
221 COG4105 ComL DNA uptake lipopr 96.3 0.85 1.8E-05 41.2 18.0 61 597-657 173-236 (254)
222 KOG2796 Uncharacterized conser 96.2 0.23 5E-06 44.4 13.5 135 489-624 178-319 (366)
223 COG4235 Cytochrome c biogenesi 96.1 0.16 3.5E-06 46.7 13.1 104 520-625 153-261 (287)
224 KOG0543 FKBP-type peptidyl-pro 96.0 0.086 1.9E-06 50.4 11.1 95 560-654 258-355 (397)
225 PF13424 TPR_12: Tetratricopep 95.9 0.012 2.7E-07 43.0 4.4 60 560-619 6-74 (78)
226 KOG0543 FKBP-type peptidyl-pro 95.8 0.035 7.6E-07 52.9 7.8 66 591-656 257-322 (397)
227 PF12921 ATP13: Mitochondrial 95.8 0.1 2.2E-06 42.0 9.1 51 519-569 48-98 (126)
228 COG1729 Uncharacterized protei 95.7 0.083 1.8E-06 47.9 9.3 100 526-626 145-250 (262)
229 COG3118 Thioredoxin domain-con 95.7 1.2 2.7E-05 41.0 16.5 146 497-644 143-291 (304)
230 KOG3941 Intermediate in Toll s 95.7 0.092 2E-06 47.3 9.2 112 54-166 50-187 (406)
231 KOG1941 Acetylcholine receptor 95.6 0.099 2.1E-06 48.9 9.4 194 459-652 45-273 (518)
232 PF03704 BTAD: Bacterial trans 95.6 0.081 1.8E-06 44.5 8.6 72 71-144 64-140 (146)
233 COG3118 Thioredoxin domain-con 95.6 0.61 1.3E-05 42.9 14.2 123 531-656 142-267 (304)
234 KOG1920 IkappaB kinase complex 95.5 4.4 9.5E-05 44.9 22.3 144 459-618 910-1053(1265)
235 PRK11906 transcriptional regul 95.5 0.26 5.7E-06 48.5 12.5 142 503-648 273-430 (458)
236 KOG1585 Protein required for f 95.5 0.9 1.9E-05 40.4 14.2 89 560-649 151-251 (308)
237 KOG4555 TPR repeat-containing 95.4 0.16 3.4E-06 40.0 8.4 89 568-656 52-146 (175)
238 COG4785 NlpI Lipoprotein NlpI, 95.4 1.3 2.9E-05 38.6 14.6 161 488-656 99-268 (297)
239 PF13525 YfiO: Outer membrane 95.4 0.56 1.2E-05 42.0 13.5 67 247-313 5-71 (203)
240 KOG3941 Intermediate in Toll s 95.3 0.2 4.3E-06 45.3 10.0 102 372-473 50-174 (406)
241 smart00299 CLH Clathrin heavy 95.3 1.3 2.9E-05 36.7 14.8 127 491-637 10-137 (140)
242 PF13281 DUF4071: Domain of un 95.3 1.6 3.5E-05 42.4 16.8 173 40-235 143-339 (374)
243 COG0457 NrfG FOG: TPR repeat [ 95.2 2.5 5.4E-05 38.7 25.3 192 458-653 60-264 (291)
244 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.12 2.6E-06 50.7 9.0 61 522-585 74-138 (453)
245 PF13512 TPR_18: Tetratricopep 95.1 0.6 1.3E-05 38.1 11.4 61 566-626 17-82 (142)
246 PF12921 ATP13: Mitochondrial 95.1 0.24 5.3E-06 39.8 9.3 76 524-599 3-96 (126)
247 PF13512 TPR_18: Tetratricopep 95.0 0.62 1.3E-05 38.0 11.1 113 495-625 17-133 (142)
248 PF10300 DUF3808: Protein of u 94.9 1.3 2.9E-05 45.4 16.2 158 493-653 193-375 (468)
249 COG1729 Uncharacterized protei 94.8 0.31 6.7E-06 44.3 9.8 93 490-585 144-241 (262)
250 PF04053 Coatomer_WDAD: Coatom 94.6 0.41 8.8E-06 48.3 11.5 157 465-651 269-428 (443)
251 PF02259 FAT: FAT domain; Int 94.5 5.3 0.00011 39.5 19.3 150 487-638 145-305 (352)
252 KOG2041 WD40 repeat protein [G 94.4 7.3 0.00016 40.5 27.3 54 246-310 851-904 (1189)
253 PRK15331 chaperone protein Sic 94.4 0.64 1.4E-05 38.9 10.1 86 498-586 47-132 (165)
254 PF07719 TPR_2: Tetratricopept 94.1 0.16 3.4E-06 29.6 4.7 32 593-624 3-34 (34)
255 PF13428 TPR_14: Tetratricopep 94.0 0.094 2E-06 33.0 3.7 35 625-659 1-35 (44)
256 PRK11906 transcriptional regul 93.9 2.2 4.7E-05 42.4 14.2 143 472-619 273-435 (458)
257 smart00299 CLH Clathrin heavy 93.9 1.8 3.8E-05 36.0 12.3 26 202-227 70-95 (140)
258 KOG2610 Uncharacterized conser 93.8 2.4 5.3E-05 39.6 13.5 176 469-648 115-309 (491)
259 PF00515 TPR_1: Tetratricopept 93.8 0.14 3.1E-06 29.9 4.0 31 593-623 3-33 (34)
260 COG0457 NrfG FOG: TPR repeat [ 93.8 5.3 0.00011 36.4 23.3 190 430-623 67-268 (291)
261 KOG2114 Vacuolar assembly/sort 93.5 12 0.00027 39.9 24.1 109 40-157 336-448 (933)
262 KOG2114 Vacuolar assembly/sort 93.4 13 0.00028 39.8 24.7 55 564-619 710-764 (933)
263 PF08631 SPO22: Meiosis protei 93.1 8 0.00017 36.7 22.7 17 601-617 256-272 (278)
264 PF10300 DUF3808: Protein of u 93.0 5.6 0.00012 40.9 16.5 113 435-550 246-374 (468)
265 PF13176 TPR_7: Tetratricopept 92.9 0.19 4.2E-06 29.8 3.6 26 627-652 1-26 (36)
266 KOG1920 IkappaB kinase complex 92.9 17 0.00038 40.6 20.0 27 627-653 1186-1212(1265)
267 PF09613 HrpB1_HrpK: Bacterial 92.8 0.83 1.8E-05 38.1 8.2 81 560-640 8-93 (160)
268 KOG4555 TPR repeat-containing 92.8 0.37 7.9E-06 38.0 5.8 57 598-654 50-106 (175)
269 KOG4234 TPR repeat-containing 92.7 0.47 1E-05 40.6 6.8 124 531-656 103-235 (271)
270 COG4105 ComL DNA uptake lipopr 92.6 7.8 0.00017 35.2 16.8 83 248-330 35-117 (254)
271 KOG1130 Predicted G-alpha GTPa 92.6 0.86 1.9E-05 43.7 9.0 127 424-550 197-342 (639)
272 PF04053 Coatomer_WDAD: Coatom 92.6 3.5 7.7E-05 41.7 14.0 104 362-482 324-427 (443)
273 KOG2610 Uncharacterized conser 92.6 1.1 2.3E-05 41.8 9.3 159 499-660 114-283 (491)
274 PF09205 DUF1955: Domain of un 92.5 4.6 0.0001 32.3 12.3 60 492-552 90-149 (161)
275 PF07035 Mic1: Colon cancer-as 92.5 5.4 0.00012 33.9 12.7 136 187-351 15-150 (167)
276 COG4649 Uncharacterized protei 92.4 2.4 5.2E-05 35.6 10.2 130 488-619 59-195 (221)
277 PF08631 SPO22: Meiosis protei 92.1 11 0.00024 35.8 21.3 106 247-357 84-193 (278)
278 TIGR02561 HrpB1_HrpK type III 92.1 0.97 2.1E-05 36.9 7.6 39 602-640 55-93 (153)
279 PF09613 HrpB1_HrpK: Bacterial 92.0 4.2 9.2E-05 34.0 11.4 48 535-585 22-70 (160)
280 PF04184 ST7: ST7 protein; In 91.9 6.1 0.00013 39.5 14.1 55 564-618 264-322 (539)
281 PRK09687 putative lyase; Provi 91.8 12 0.00025 35.5 25.9 125 486-622 140-265 (280)
282 PF02259 FAT: FAT domain; Int 91.8 7.6 0.00016 38.4 15.7 51 45-97 5-57 (352)
283 PF07719 TPR_2: Tetratricopept 91.4 0.37 8.1E-06 28.0 3.6 31 626-656 2-32 (34)
284 PF00637 Clathrin: Region in C 91.3 0.56 1.2E-05 39.2 5.9 86 8-96 12-97 (143)
285 COG3629 DnrI DNA-binding trans 90.9 1.2 2.7E-05 41.2 8.1 61 593-653 155-215 (280)
286 KOG4648 Uncharacterized conser 90.6 0.63 1.4E-05 43.4 5.8 98 529-629 103-203 (536)
287 PF13176 TPR_7: Tetratricopept 90.6 0.48 1E-05 28.1 3.5 27 593-619 1-27 (36)
288 PF13170 DUF4003: Protein of u 90.5 6.5 0.00014 37.4 12.7 92 372-465 119-225 (297)
289 KOG1258 mRNA processing protei 89.9 26 0.00056 36.1 31.4 384 246-639 44-489 (577)
290 KOG0890 Protein kinase of the 89.7 58 0.0012 39.9 23.3 282 358-656 1422-1733(2382)
291 PF13181 TPR_8: Tetratricopept 89.7 0.72 1.6E-05 26.7 3.8 29 594-622 4-32 (34)
292 PF00515 TPR_1: Tetratricopept 89.6 0.66 1.4E-05 26.9 3.6 31 626-656 2-32 (34)
293 PF07721 TPR_4: Tetratricopept 89.2 0.52 1.1E-05 25.5 2.6 24 626-649 2-25 (26)
294 PRK11619 lytic murein transgly 88.9 37 0.00081 36.6 35.5 91 566-656 414-507 (644)
295 KOG0890 Protein kinase of the 88.9 66 0.0014 39.4 33.1 368 206-634 1388-1798(2382)
296 COG2909 MalT ATP-dependent tra 88.9 35 0.00076 37.1 17.3 185 468-656 426-649 (894)
297 PRK09687 putative lyase; Provi 88.9 21 0.00046 33.7 26.0 78 246-331 36-117 (280)
298 TIGR03504 FimV_Cterm FimV C-te 88.8 0.75 1.6E-05 28.7 3.4 28 629-656 3-30 (44)
299 COG2976 Uncharacterized protei 88.8 15 0.00032 31.9 13.4 129 490-623 56-191 (207)
300 COG4649 Uncharacterized protei 88.8 14 0.0003 31.4 14.6 118 467-585 68-193 (221)
301 PF13174 TPR_6: Tetratricopept 88.6 0.99 2.2E-05 25.8 3.9 24 600-623 9-32 (33)
302 COG3629 DnrI DNA-binding trans 88.4 3.7 8.1E-05 38.2 9.1 78 247-328 153-236 (280)
303 KOG4570 Uncharacterized conser 88.3 4.3 9.3E-05 37.7 9.1 102 32-135 58-165 (418)
304 PRK10941 hypothetical protein; 88.2 3 6.6E-05 38.8 8.5 66 594-659 184-249 (269)
305 PF10602 RPN7: 26S proteasome 88.2 7.5 0.00016 33.7 10.5 57 493-549 41-99 (177)
306 PF04097 Nic96: Nup93/Nic96; 88.2 35 0.00076 36.7 17.6 61 252-315 116-183 (613)
307 PF13181 TPR_8: Tetratricopept 87.5 1.2 2.6E-05 25.7 3.8 30 626-655 2-31 (34)
308 COG2976 Uncharacterized protei 87.4 4.6 0.0001 34.8 8.3 95 564-659 94-193 (207)
309 PRK15180 Vi polysaccharide bio 87.3 4 8.6E-05 40.2 8.8 128 499-630 300-430 (831)
310 PF04097 Nic96: Nup93/Nic96; 87.1 47 0.001 35.7 20.7 63 71-136 114-183 (613)
311 PF13174 TPR_6: Tetratricopept 87.1 0.93 2E-05 25.9 3.1 30 627-656 2-31 (33)
312 KOG1586 Protein required for f 87.1 22 0.00048 31.9 13.5 19 605-623 209-227 (288)
313 KOG1585 Protein required for f 87.0 9.1 0.0002 34.4 10.0 22 494-515 37-58 (308)
314 COG5159 RPN6 26S proteasome re 86.8 26 0.00056 32.4 13.3 33 393-425 9-41 (421)
315 KOG4234 TPR repeat-containing 86.7 8.7 0.00019 33.3 9.4 94 495-592 102-202 (271)
316 KOG4570 Uncharacterized conser 86.5 3.7 8E-05 38.1 7.7 99 452-551 59-163 (418)
317 PF10602 RPN7: 26S proteasome 86.5 7 0.00015 33.9 9.3 95 458-552 37-142 (177)
318 KOG1464 COP9 signalosome, subu 86.4 26 0.00056 32.0 16.5 241 368-615 39-327 (440)
319 PF07035 Mic1: Colon cancer-as 86.2 20 0.00043 30.5 14.6 40 341-380 14-53 (167)
320 PF10345 Cohesin_load: Cohesin 86.1 54 0.0012 35.4 35.8 199 176-382 31-251 (608)
321 PF11207 DUF2989: Protein of u 86.0 4.9 0.00011 35.1 7.9 75 570-645 118-198 (203)
322 PF02284 COX5A: Cytochrome c o 85.8 5.7 0.00012 30.1 7.0 49 585-633 39-87 (108)
323 PF13170 DUF4003: Protein of u 85.7 18 0.00039 34.5 12.4 148 504-653 78-245 (297)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 85.6 5.9 0.00013 29.6 6.9 47 586-632 37-83 (103)
325 PF13374 TPR_10: Tetratricopep 85.5 1.5 3.3E-05 26.8 3.7 29 626-654 3-31 (42)
326 PF00637 Clathrin: Region in C 85.5 0.91 2E-05 37.9 3.4 83 428-513 13-95 (143)
327 TIGR02561 HrpB1_HrpK type III 85.4 14 0.00031 30.4 9.8 50 212-275 21-72 (153)
328 KOG1586 Protein required for f 84.8 29 0.00063 31.1 13.8 93 564-656 118-226 (288)
329 KOG4642 Chaperone-dependent E3 84.5 3.9 8.6E-05 36.4 6.7 85 572-656 23-109 (284)
330 PF02284 COX5A: Cytochrome c o 84.4 5.2 0.00011 30.3 6.3 60 506-567 28-87 (108)
331 COG1747 Uncharacterized N-term 84.2 51 0.0011 33.4 19.9 161 419-585 63-231 (711)
332 KOG4648 Uncharacterized conser 83.6 4.2 9.1E-05 38.2 6.8 87 495-592 104-199 (536)
333 COG4785 NlpI Lipoprotein NlpI, 82.7 4.1 8.9E-05 35.7 6.0 111 532-648 74-189 (297)
334 PF13762 MNE1: Mitochondrial s 82.4 18 0.00039 29.9 9.3 105 187-334 23-130 (145)
335 PF06552 TOM20_plant: Plant sp 82.4 4.4 9.6E-05 34.5 6.0 33 607-639 51-83 (186)
336 PF13374 TPR_10: Tetratricopep 82.4 3.3 7.1E-05 25.2 4.2 28 592-619 3-30 (42)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 82.1 13 0.00029 27.8 7.5 63 503-567 22-84 (103)
338 PF14853 Fis1_TPR_C: Fis1 C-te 81.9 4.7 0.0001 26.5 4.8 34 596-629 6-39 (53)
339 KOG1941 Acetylcholine receptor 81.4 11 0.00023 36.0 8.6 185 471-655 20-236 (518)
340 PF13431 TPR_17: Tetratricopep 81.4 1.5 3.2E-05 25.6 2.1 31 27-58 3-33 (34)
341 COG2909 MalT ATP-dependent tra 81.3 89 0.0019 34.2 22.5 219 433-654 426-688 (894)
342 TIGR02508 type_III_yscG type I 81.0 12 0.00025 28.3 6.9 88 18-110 20-107 (115)
343 KOG2066 Vacuolar assembly/sort 80.5 89 0.0019 33.6 23.8 57 253-313 362-421 (846)
344 COG1747 Uncharacterized N-term 80.3 71 0.0015 32.5 20.2 176 454-636 63-250 (711)
345 COG3947 Response regulator con 80.1 7.9 0.00017 35.7 7.1 60 593-652 281-340 (361)
346 COG4455 ImpE Protein of avirul 79.9 6.8 0.00015 34.5 6.3 63 562-624 4-68 (273)
347 KOG0276 Vesicle coat complex C 79.8 15 0.00033 37.7 9.6 149 369-549 599-747 (794)
348 COG4455 ImpE Protein of avirul 79.7 19 0.00042 31.8 8.9 58 491-549 4-61 (273)
349 smart00386 HAT HAT (Half-A-TPR 79.7 4.6 9.9E-05 22.8 4.0 30 605-634 1-30 (33)
350 smart00028 TPR Tetratricopepti 79.5 4.8 0.0001 22.1 4.1 29 594-622 4-32 (34)
351 KOG4279 Serine/threonine prote 79.4 47 0.001 35.3 13.0 180 443-625 184-400 (1226)
352 PF14561 TPR_20: Tetratricopep 79.4 6.7 0.00015 29.4 5.6 52 590-641 21-74 (90)
353 PRK15180 Vi polysaccharide bio 76.9 18 0.0004 35.9 9.0 138 464-606 296-442 (831)
354 KOG1308 Hsp70-interacting prot 76.6 1.2 2.5E-05 41.9 1.0 84 573-656 128-213 (377)
355 KOG2063 Vacuolar assembly/sort 75.0 1.3E+02 0.0028 33.6 15.5 57 41-97 310-374 (877)
356 smart00028 TPR Tetratricopepti 74.3 5.4 0.00012 21.8 3.4 30 626-655 2-31 (34)
357 KOG1258 mRNA processing protei 74.1 1.2E+02 0.0025 31.7 28.1 83 15-98 91-180 (577)
358 KOG0276 Vesicle coat complex C 74.0 67 0.0015 33.4 12.1 27 524-550 667-693 (794)
359 PHA02875 ankyrin repeat protei 73.8 78 0.0017 32.1 13.6 203 12-226 8-224 (413)
360 KOG4077 Cytochrome c oxidase, 71.9 23 0.0005 28.1 6.7 49 584-632 77-125 (149)
361 TIGR03504 FimV_Cterm FimV C-te 71.4 11 0.00024 23.6 4.1 26 392-417 4-29 (44)
362 PRK12798 chemotaxis protein; R 71.2 1.1E+02 0.0025 30.3 20.9 184 470-656 125-326 (421)
363 KOG0545 Aryl-hydrocarbon recep 71.1 29 0.00063 31.3 8.0 55 601-655 240-294 (329)
364 PF04910 Tcf25: Transcriptiona 69.9 1.2E+02 0.0026 30.0 13.9 64 590-653 99-167 (360)
365 KOG1464 COP9 signalosome, subu 69.8 92 0.002 28.7 15.3 180 400-579 40-251 (440)
366 KOG2422 Uncharacterized conser 68.9 93 0.002 32.2 11.8 55 10-64 349-404 (665)
367 cd08819 CARD_MDA5_2 Caspase ac 68.6 20 0.00044 26.3 5.5 67 21-89 20-86 (88)
368 PF13762 MNE1: Mitochondrial s 68.6 45 0.00097 27.6 8.2 82 72-153 42-128 (145)
369 PF04184 ST7: ST7 protein; In 68.2 1.5E+02 0.0032 30.4 19.9 61 489-550 260-322 (539)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 67.9 44 0.00095 27.0 8.1 42 609-650 81-124 (126)
371 KOG1550 Extracellular protein 67.8 1.7E+02 0.0038 31.1 19.8 247 398-654 260-538 (552)
372 PF11207 DUF2989: Protein of u 67.5 37 0.00081 29.8 7.9 75 534-611 118-198 (203)
373 KOG2422 Uncharacterized conser 67.2 71 0.0015 33.0 10.7 51 602-652 353-405 (665)
374 TIGR02508 type_III_yscG type I 67.2 54 0.0012 25.0 9.9 86 438-527 21-106 (115)
375 PF10579 Rapsyn_N: Rapsyn N-te 66.8 17 0.00036 26.2 4.7 44 501-544 19-64 (80)
376 KOG2063 Vacuolar assembly/sort 66.8 2.2E+02 0.0048 31.9 16.0 30 201-230 504-533 (877)
377 KOG4507 Uncharacterized conser 66.5 31 0.00067 35.5 8.1 91 569-659 617-710 (886)
378 PF12862 Apc5: Anaphase-promot 66.1 19 0.00041 27.3 5.4 54 601-654 8-70 (94)
379 KOG1550 Extracellular protein 64.6 1.7E+02 0.0038 31.1 14.0 16 606-621 379-394 (552)
380 PF10345 Cohesin_load: Cohesin 63.7 2.2E+02 0.0048 30.8 32.0 135 19-154 37-191 (608)
381 PF09670 Cas_Cas02710: CRISPR- 63.4 93 0.002 31.1 11.1 51 499-550 142-196 (379)
382 PF14669 Asp_Glu_race_2: Putat 62.8 1E+02 0.0023 26.8 13.9 97 376-482 96-206 (233)
383 PRK13800 putative oxidoreducta 62.7 2.8E+02 0.0061 31.7 25.4 258 374-653 622-880 (897)
384 PF07163 Pex26: Pex26 protein; 62.1 70 0.0015 29.7 8.8 83 464-546 90-181 (309)
385 PF09477 Type_III_YscG: Bacter 61.4 44 0.00096 25.8 6.2 79 18-99 21-99 (116)
386 KOG4077 Cytochrome c oxidase, 61.3 37 0.00081 27.0 6.0 58 507-566 68-125 (149)
387 PF14863 Alkyl_sulf_dimr: Alky 60.9 46 0.001 27.5 7.0 66 575-643 57-122 (141)
388 KOG4642 Chaperone-dependent E3 60.7 84 0.0018 28.5 8.8 117 467-585 20-143 (284)
389 PF09986 DUF2225: Uncharacteri 60.7 89 0.0019 28.2 9.4 32 625-656 165-196 (214)
390 KOG2066 Vacuolar assembly/sort 60.1 2.6E+02 0.0056 30.4 26.0 170 45-233 363-537 (846)
391 PF14853 Fis1_TPR_C: Fis1 C-te 59.5 20 0.00043 23.6 3.8 30 627-656 3-32 (53)
392 COG4976 Predicted methyltransf 59.1 16 0.00034 32.6 4.1 58 569-626 5-64 (287)
393 PF07163 Pex26: Pex26 protein; 58.3 99 0.0021 28.8 9.1 20 614-633 267-286 (309)
394 cd08819 CARD_MDA5_2 Caspase ac 58.3 56 0.0012 24.1 6.2 64 442-507 22-85 (88)
395 PF11848 DUF3368: Domain of un 58.0 43 0.00093 21.5 5.1 35 293-327 11-45 (48)
396 KOG0991 Replication factor C, 57.9 1.5E+02 0.0032 26.9 11.1 141 380-529 123-279 (333)
397 PF11846 DUF3366: Domain of un 57.7 41 0.00089 29.7 6.9 37 586-622 139-175 (193)
398 KOG0403 Neoplastic transformat 56.8 2.2E+02 0.0048 28.6 19.8 71 360-434 513-586 (645)
399 KOG0376 Serine-threonine phosp 56.4 9.3 0.0002 38.1 2.7 100 530-632 11-113 (476)
400 KOG3364 Membrane protein invol 56.3 57 0.0012 26.5 6.4 73 556-628 29-108 (149)
401 KOG3364 Membrane protein invol 56.0 86 0.0019 25.6 7.3 64 520-585 29-97 (149)
402 PF11838 ERAP1_C: ERAP1-like C 53.6 1.8E+02 0.004 28.1 11.4 82 18-99 145-231 (324)
403 PF11846 DUF3366: Domain of un 53.5 35 0.00077 30.1 5.8 32 554-585 139-170 (193)
404 KOG0292 Vesicle coat complex C 53.2 24 0.00053 38.1 5.1 96 500-619 605-700 (1202)
405 KOG4507 Uncharacterized conser 53.2 44 0.00095 34.4 6.6 101 533-636 617-721 (886)
406 PHA02537 M terminase endonucle 53.2 1.5E+02 0.0032 27.1 9.4 109 496-624 91-211 (230)
407 KOG0292 Vesicle coat complex C 52.1 1E+02 0.0022 33.8 9.2 160 462-656 625-784 (1202)
408 PHA02940 hypothetical protein; 51.9 1.2E+02 0.0025 27.4 8.2 118 203-330 98-215 (315)
409 PRK13800 putative oxidoreducta 51.8 4.2E+02 0.0092 30.4 26.3 124 282-413 754-878 (897)
410 PF13934 ELYS: Nuclear pore co 51.8 1.9E+02 0.0041 26.4 11.4 106 491-605 79-186 (226)
411 KOG2396 HAT (Half-A-TPR) repea 51.1 2.9E+02 0.0064 28.3 30.9 444 68-585 104-556 (568)
412 COG2912 Uncharacterized conser 50.8 53 0.0011 30.5 6.3 60 597-656 187-246 (269)
413 PF11848 DUF3368: Domain of un 48.7 48 0.001 21.2 4.2 34 115-148 12-45 (48)
414 PF12862 Apc5: Anaphase-promot 48.7 1.1E+02 0.0023 23.1 6.9 21 599-619 49-69 (94)
415 KOG3824 Huntingtin interacting 48.6 36 0.00078 31.8 4.9 61 570-630 127-189 (472)
416 KOG0551 Hsp90 co-chaperone CNS 48.4 1E+02 0.0023 29.5 7.8 92 560-651 82-179 (390)
417 PF10366 Vps39_1: Vacuolar sor 47.9 1.3E+02 0.0029 23.5 8.5 26 287-312 42-67 (108)
418 PF12968 DUF3856: Domain of Un 47.1 1.5E+02 0.0031 23.7 7.2 58 595-652 59-127 (144)
419 PRK13342 recombination factor 46.9 3.3E+02 0.0071 27.7 14.3 45 390-434 230-277 (413)
420 PF11768 DUF3312: Protein of u 46.1 2E+02 0.0042 30.0 9.9 25 461-485 412-436 (545)
421 PRK10941 hypothetical protein; 45.5 1.7E+02 0.0037 27.5 9.0 66 563-628 185-252 (269)
422 PF09477 Type_III_YscG: Bacter 45.5 1.4E+02 0.0031 23.1 9.3 86 437-526 21-106 (116)
423 cd00280 TRFH Telomeric Repeat 44.9 76 0.0016 27.4 5.8 18 533-550 121-138 (200)
424 COG0790 FOG: TPR repeat, SEL1 44.6 2.8E+02 0.0061 26.3 15.7 50 471-520 91-145 (292)
425 PRK10564 maltose regulon perip 43.5 49 0.0011 31.2 5.0 40 490-529 259-298 (303)
426 PF14689 SPOB_a: Sensor_kinase 43.4 41 0.00088 23.0 3.5 29 625-653 23-51 (62)
427 KOG0376 Serine-threonine phosp 43.1 39 0.00084 33.9 4.6 120 494-622 10-132 (476)
428 PF07575 Nucleopor_Nup85: Nup8 43.0 4.5E+02 0.0097 28.2 14.9 365 37-466 148-539 (566)
429 PF12926 MOZART2: Mitotic-spin 42.8 1.4E+02 0.0029 22.1 6.0 41 24-64 29-69 (88)
430 COG4976 Predicted methyltransf 42.7 79 0.0017 28.5 5.8 55 533-590 5-61 (287)
431 PF11838 ERAP1_C: ERAP1-like C 42.3 3.3E+02 0.0071 26.4 15.5 30 590-619 200-229 (324)
432 KOG0686 COP9 signalosome, subu 41.9 3.7E+02 0.008 26.8 13.6 56 358-413 152-213 (466)
433 cd00280 TRFH Telomeric Repeat 41.8 94 0.002 26.9 5.9 20 600-619 120-139 (200)
434 cd08326 CARD_CASP9 Caspase act 41.5 1.2E+02 0.0026 22.3 5.9 63 22-88 18-80 (84)
435 PF04090 RNA_pol_I_TF: RNA pol 41.5 2.5E+02 0.0055 24.9 9.8 36 488-524 41-76 (199)
436 PF04190 DUF410: Protein of un 41.3 3E+02 0.0066 25.7 15.5 154 469-654 2-170 (260)
437 smart00777 Mad3_BUB1_I Mad3/BU 41.2 1.9E+02 0.0041 23.3 7.9 40 610-649 82-123 (125)
438 PF11663 Toxin_YhaV: Toxin wit 41.2 39 0.00085 27.3 3.5 32 81-115 107-138 (140)
439 PF04034 DUF367: Domain of unk 41.0 1.9E+02 0.0041 23.3 7.5 59 559-617 66-125 (127)
440 PF11663 Toxin_YhaV: Toxin wit 41.0 33 0.00071 27.8 3.0 32 15-48 107-138 (140)
441 PF13934 ELYS: Nuclear pore co 40.5 2.9E+02 0.0062 25.2 12.9 125 460-592 79-205 (226)
442 PRK10564 maltose regulon perip 40.0 56 0.0012 30.8 4.8 43 281-323 253-296 (303)
443 PF10255 Paf67: RNA polymerase 39.8 2E+02 0.0044 28.8 8.9 69 202-274 123-191 (404)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 39.6 2E+02 0.0044 23.2 7.8 43 506-548 81-124 (126)
445 KOG4567 GTPase-activating prot 39.3 3.2E+02 0.0069 26.1 9.3 44 407-450 263-306 (370)
446 PF06957 COPI_C: Coatomer (COP 38.9 4.3E+02 0.0094 26.8 12.7 29 206-234 123-152 (422)
447 PF07720 TPR_3: Tetratricopept 38.9 85 0.0018 18.6 4.6 17 631-647 7-23 (36)
448 PRK13342 recombination factor 38.9 4.4E+02 0.0095 26.8 14.1 101 419-537 173-279 (413)
449 KOG2471 TPR repeat-containing 38.6 4.5E+02 0.0099 27.0 12.2 340 96-499 9-380 (696)
450 PHA02875 ankyrin repeat protei 38.2 4.4E+02 0.0095 26.7 17.5 211 47-319 8-230 (413)
451 PF13929 mRNA_stabil: mRNA sta 38.1 3.6E+02 0.0077 25.6 20.4 54 282-335 200-254 (292)
452 PF12796 Ank_2: Ankyrin repeat 38.0 1E+02 0.0022 22.5 5.5 14 49-62 5-18 (89)
453 PF14689 SPOB_a: Sensor_kinase 37.1 48 0.001 22.7 3.1 29 104-132 22-50 (62)
454 COG4941 Predicted RNA polymera 36.7 4E+02 0.0087 25.8 10.1 118 504-626 272-400 (415)
455 PF04910 Tcf25: Transcriptiona 36.2 4.5E+02 0.0096 26.1 16.8 56 495-550 110-166 (360)
456 PF12968 DUF3856: Domain of Un 36.0 1.2E+02 0.0026 24.1 5.2 72 593-664 9-100 (144)
457 PRK00971 glutaminase; Provisio 34.9 3.9E+02 0.0085 25.7 9.6 17 194-210 86-102 (307)
458 PF10579 Rapsyn_N: Rapsyn N-te 34.6 1.2E+02 0.0027 21.9 4.8 46 603-648 18-66 (80)
459 COG3947 Response regulator con 34.5 4.1E+02 0.0089 25.2 14.4 66 393-459 285-355 (361)
460 KOG2659 LisH motif-containing 34.3 3.6E+02 0.0077 24.5 10.1 113 519-634 22-147 (228)
461 KOG3807 Predicted membrane pro 34.3 3.4E+02 0.0074 26.0 8.8 57 492-550 279-338 (556)
462 PF04090 RNA_pol_I_TF: RNA pol 34.2 95 0.0021 27.4 5.1 29 5-33 43-71 (199)
463 PF07064 RIC1: RIC1; InterPro 33.8 4E+02 0.0087 24.9 14.0 155 491-656 85-251 (258)
464 KOG1308 Hsp70-interacting prot 33.7 13 0.00028 35.3 -0.2 64 601-664 124-188 (377)
465 COG5191 Uncharacterized conser 33.6 95 0.0021 29.3 5.2 79 555-633 103-184 (435)
466 PLN03192 Voltage-dependent pot 33.4 4.9E+02 0.011 29.6 12.0 147 109-273 527-678 (823)
467 KOG2908 26S proteasome regulat 33.3 4.6E+02 0.01 25.5 9.7 57 529-585 81-141 (380)
468 PF12926 MOZART2: Mitotic-spin 33.2 2E+02 0.0044 21.3 6.4 41 342-382 29-69 (88)
469 PF04781 DUF627: Protein of un 33.0 2.4E+02 0.0053 22.1 7.0 40 609-648 62-101 (111)
470 PRK14700 recombination factor 32.9 4.5E+02 0.0097 25.2 9.6 48 389-436 125-175 (300)
471 PF04190 DUF410: Protein of un 32.2 4.3E+02 0.0093 24.8 18.1 160 259-451 2-170 (260)
472 COG5108 RPO41 Mitochondrial DN 32.0 3.2E+02 0.007 29.1 8.9 74 361-434 33-115 (1117)
473 PF14561 TPR_20: Tetratricopep 31.8 2.2E+02 0.0048 21.3 8.0 41 614-654 11-51 (90)
474 COG2178 Predicted RNA-binding 31.5 3.6E+02 0.0079 23.7 8.2 105 20-133 20-149 (204)
475 PF06552 TOM20_plant: Plant sp 31.5 80 0.0017 27.3 4.1 35 607-641 7-41 (186)
476 PF09986 DUF2225: Uncharacteri 31.3 3.2E+02 0.0069 24.7 8.2 71 247-317 118-198 (214)
477 PF03745 DUF309: Domain of unk 31.2 1.3E+02 0.0028 20.6 4.4 43 50-92 11-62 (62)
478 COG0735 Fur Fe2+/Zn2+ uptake r 30.9 2.6E+02 0.0057 23.3 7.1 49 287-335 23-71 (145)
479 PF09454 Vps23_core: Vps23 cor 30.6 80 0.0017 21.9 3.3 49 1-50 6-54 (65)
480 PRK09857 putative transposase; 30.5 3.7E+02 0.0079 25.8 8.9 63 594-656 209-271 (292)
481 TIGR02710 CRISPR-associated pr 30.5 5.6E+02 0.012 25.6 10.7 55 494-548 136-196 (380)
482 cd07153 Fur_like Ferric uptake 30.2 90 0.0019 24.6 4.2 47 9-55 6-52 (116)
483 KOG2297 Predicted translation 30.0 5E+02 0.011 24.8 12.9 22 487-508 320-341 (412)
484 COG5108 RPO41 Mitochondrial DN 29.9 3E+02 0.0066 29.3 8.4 77 252-331 33-115 (1117)
485 PF04762 IKI3: IKI3 family; I 29.6 7.6E+02 0.016 28.5 12.4 20 363-382 701-720 (928)
486 PF11817 Foie-gras_1: Foie gra 29.5 1.2E+02 0.0026 28.1 5.4 21 494-514 184-204 (247)
487 KOG4521 Nuclear pore complex, 29.4 9.6E+02 0.021 28.0 12.9 19 466-484 929-947 (1480)
488 KOG4814 Uncharacterized conser 29.4 3.4E+02 0.0074 28.8 8.6 59 595-653 398-456 (872)
489 PF11817 Foie-gras_1: Foie gra 29.2 1.6E+02 0.0035 27.2 6.2 22 564-585 183-204 (247)
490 KOG1498 26S proteasome regulat 29.1 5.9E+02 0.013 25.4 12.3 105 561-665 133-253 (439)
491 PF13646 HEAT_2: HEAT repeats; 29.0 2E+02 0.0042 20.9 5.7 47 37-83 13-59 (88)
492 cd08332 CARD_CASP2 Caspase act 28.7 2.5E+02 0.0055 21.0 6.8 60 22-85 22-81 (90)
493 PF10366 Vps39_1: Vacuolar sor 28.7 2.9E+02 0.0062 21.6 8.5 27 107-133 41-67 (108)
494 PF10516 SHNi-TPR: SHNi-TPR; 28.6 1.3E+02 0.0027 18.2 3.5 29 626-654 2-30 (38)
495 KOG4279 Serine/threonine prote 28.3 2.4E+02 0.0052 30.5 7.5 27 490-516 203-229 (1226)
496 PF13929 mRNA_stabil: mRNA sta 28.2 5.3E+02 0.011 24.5 16.9 113 473-585 144-264 (292)
497 KOG0687 26S proteasome regulat 27.9 5.6E+02 0.012 24.8 10.4 109 524-634 105-225 (393)
498 PRK12356 glutaminase; Reviewed 27.8 3.8E+02 0.0083 25.9 8.3 22 194-215 91-112 (319)
499 cd07153 Fur_like Ferric uptake 27.8 1.6E+02 0.0035 23.1 5.3 47 289-335 5-51 (116)
500 PF10255 Paf67: RNA polymerase 27.7 4.4E+02 0.0095 26.6 9.0 106 200-311 74-191 (404)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-91 Score=769.45 Aligned_cols=640 Identities=30% Similarity=0.588 Sum_probs=616.1
Q ss_pred CChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh
Q 005943 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT 80 (668)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 80 (668)
|+..+|..++.+|.+.+.++.+.+++..+.+.+..++...+|.++..|++.|+++.|.++|++|++||+.+||.+|.+|+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~ 163 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHH
Confidence 45666777777777777777777777777777777777888999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--H
Q 005943 81 SNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--R 158 (668)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~ 158 (668)
+.|++++|+++|++|...|+. ||..||+.++++|+..+++..+.+++..|.+.|+.||..+||+|+.+|++.|+.+ .
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~-Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 999999999999999999988 9999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHhhhhhhhhhcCCCchhhhhhhhc---------chhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC
Q 005943 159 KLFDQYSNWAASAYGNVALWNSMLSG---------GKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE 229 (668)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 229 (668)
++|+.|+. +|..+|+.++.+ +..++..|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+
T Consensus 243 ~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 243 LVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999987 788999999987 778999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH
Q 005943 230 RDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH 309 (668)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 309 (668)
.+..+ |..+|++|+.+|++.|++++|.++|++| ..||..+||.+|.+|++.|++++|+++|++
T Consensus 317 ~g~~~-----------d~~~~n~Li~~y~k~g~~~~A~~vf~~m------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 317 TGFAV-----------DVSVCNSLIQMYLSLGSWGEAEKVFSRM------ETKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hCCcc-----------chHHHHHHHHHHHhcCCHHHHHHHHhhC------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77665 8999999999999999999999999999 678999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhh
Q 005943 310 IHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVA 389 (668)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (668)
|.+.|+.||..||+.++.+|++.|++ +.+.++++.+.+.|+.|+..++++|+.+|++.|++++|.++|++|.++|..+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs 457 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDL--DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchH--HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|++
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999985 69999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 470 CGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+|++++|.++|+.+ .+|+.+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 537 ~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 537 CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.+++|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++.+++|++...|.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 97779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEEEeCC
Q 005943 630 MLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWIEVSS 668 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 668 (668)
.++++|.+.|+|++|.++.+.|++.|+ |+||.|||||++
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 999999999999999999999999999 999999999975
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-75 Score=639.16 Aligned_cols=567 Identities=25% Similarity=0.387 Sum_probs=485.0
Q ss_pred CChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcC----CCChhHHHHHH
Q 005943 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA----RKNIVSWTTMV 76 (668)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li 76 (668)
|+..+++.++.++.+.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+.++.+..++..+. .+++..+|.++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777766542 35666677777
Q ss_pred HHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCCh
Q 005943 77 TAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSL 156 (668)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 156 (668)
..|++.|+++.|+++|++|.+ ||..+|++++.+|++.|++++|.++|++|...|+.||..||+.++++|+..++.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 777777777777777777753 666777777777777777777777777777777777777777777666655543
Q ss_pred hHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHH
Q 005943 157 TRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT 236 (668)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 236 (668)
. .+.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|+.|
T Consensus 204 ~--------------------------~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--------- 248 (857)
T PLN03077 204 A--------------------------RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--------- 248 (857)
T ss_pred h--------------------------hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC---------
Confidence 3 12244455555666666666666666666666666665555555
Q ss_pred HHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 005943 237 GIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC 316 (668)
Q Consensus 237 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 316 (668)
..||..+||++|.+|++.|++++|+++|++|...|+.
T Consensus 249 -------------------------------------------~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 249 -------------------------------------------PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred -------------------------------------------CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 5567788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHH
Q 005943 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMG 396 (668)
Q Consensus 317 p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 396 (668)
||..||+.++.+|++.|+. +.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.++|..+|+.++.+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~--~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 286 PDLMTITSVISACELLGDE--RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 005943 397 CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG 476 (668)
Q Consensus 397 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 476 (668)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC
Q 005943 477 LALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE 556 (668)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 556 (668)
.++|++|.++|+.+|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999976 999
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHH
Q 005943 557 PHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT-SPEDPSKYVMLSNVY 635 (668)
Q Consensus 557 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 635 (668)
+|..++++|+++|.++|+.++|.++|+++ .||..+|++++.+|.++|+.++|.++|++|.+. ..+|..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 789999999999999999999999999999883 345677899999999
Q ss_pred HhcCChhhHHHHHHHHH-hcCC
Q 005943 636 ATLGMWDSLSKVRKAGK-KLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~-~~~~ 656 (668)
.+.|++++|.++++.|. +.|+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCC
Confidence 99999999999999998 5566
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-71 Score=596.92 Aligned_cols=487 Identities=32% Similarity=0.567 Sum_probs=452.1
Q ss_pred CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHH
Q 005943 67 KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTL 146 (668)
Q Consensus 67 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (668)
.+..+|+.+|.++.+.|++++|+++|+.|...+...||..+|+.++.+|++.++++.+.+++..|.+.|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--------- 155 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--------- 155 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------
Confidence 45567888888888888888888888888776533378888888888888888888887777777766554
Q ss_pred HhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhc
Q 005943 147 LDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 147 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
||..+|+.++.+|++.|+++.|.++|++
T Consensus 156 ----------------------------------------------------~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 156 ----------------------------------------------------PDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred ----------------------------------------------------cchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 5555566666666666666666666666
Q ss_pred cCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 227 MPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
| ..||..+||.+|.+|++.|++++|+++
T Consensus 184 m----------------------------------------------------~~~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 184 M----------------------------------------------------PERNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred C----------------------------------------------------CCCCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 6 456888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD 386 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (668)
|++|.+.|+.||..||+.++.+|+..|.. +.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~--~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~ 289 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcH--HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
+.+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
|++.|++++|.++|++|.+||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
+.|.++.|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|..+|+++.|..+++++.+..|++..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 99987779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEEEeCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWIEVSS 668 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 668 (668)
+|..++.+|.+.|++++|.++++.|++.|+ +.||.||+|+++
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 999999999999999999999999999999 999999999874
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-68 Score=574.25 Aligned_cols=538 Identities=14% Similarity=0.181 Sum_probs=486.2
Q ss_pred ChhhHHHHHHHhcccCchhhhhhhHHHHHHhcC-CCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh
Q 005943 2 DLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGL-SQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT 80 (668)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 80 (668)
+...|..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|++||..+|+.+|.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999995 5677788899999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHH
Q 005943 81 SNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKL 160 (668)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~ 160 (668)
+.|+++.|.++|+.|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999988 9999999999999999999999999999999999999999999999999999987333
Q ss_pred HhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC--CCcchHHHH
Q 005943 161 FDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE--RDVVSWTGI 238 (668)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 238 (668)
.+++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .+..+
T Consensus 528 --------------------------~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P---- 577 (1060)
T PLN03218 528 --------------------------GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP---- 577 (1060)
T ss_pred --------------------------HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC----
Confidence 5556666699999999999999999999999999999999974 33333
Q ss_pred hhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 239 IVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 239 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
|..+|++++.+|++.|++++|.++|+.|.+ .+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 578 -------D~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 578 -------DHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred -------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999965 45789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC----CCChhhHHHHH
Q 005943 319 SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP----KKDVVAWSGLI 394 (668)
Q Consensus 319 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~ 394 (668)
..||+.++.+|++.|+. +.|.++++.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||
T Consensus 649 ~~TynsLI~a~~k~G~~--eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDL--DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999995 58999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005943 395 MGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEID 474 (668)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 474 (668)
.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++++..|. ++++
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ 804 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFE 804 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997654 2456
Q ss_pred HHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 475 DGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 475 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
+|..+.+.+.. |+. .......+..+.|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|... +
T Consensus 805 ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~ 877 (1060)
T PLN03218 805 KACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-A 877 (1060)
T ss_pred HHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-C
Confidence 66555443321 110 1111222345679999999999999999999999999888999999999999998865 8
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHH
Q 005943 555 LEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKT 592 (668)
Q Consensus 555 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 592 (668)
..|+..+|+++++++++. .++|..++++| ++.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999998432 46899999999 5566653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-65 Score=546.64 Aligned_cols=530 Identities=15% Similarity=0.182 Sum_probs=334.3
Q ss_pred CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHH
Q 005943 67 KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTL 146 (668)
Q Consensus 67 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (668)
++...|..++..+++.|++++|+++|++|.+.|...++..+++.++.+|.+.|.+++|..+++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4666788888888888888888888888888776646777777788888888888888888877753 777777777
Q ss_pred HhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhc
Q 005943 147 LDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 147 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
|.+|++.|+++.. .++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 444 L~a~~k~g~~e~A--------------------------~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e 497 (1060)
T PLN03218 444 MSVCASSQDIDGA--------------------------LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497 (1060)
T ss_pred HHHHHhCcCHHHH--------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 7777777766522 24444555577777777777777777777777777777777
Q ss_pred cCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 227 MPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
|.+.+..+ |..+|+.+|.+|++.|++++|.++|+.|.+ .+..||..+|+.+|.+|++.|++++|.++
T Consensus 498 M~~~Gv~P-----------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~--~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 498 MVNAGVEA-----------NVHTFGALIDGCARAGQVAKAFGAYGIMRS--KNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHcCCCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77555433 455555555555555555555555555532 33556666666666666666666666666
Q ss_pred HHHHHh--CCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC
Q 005943 307 LSHIHS--SGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK 384 (668)
Q Consensus 307 ~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (668)
|++|.. .|+.||..||++++.+|++.|++ +.|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~l--deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQV--DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 666654 35566666666666666666666 66666666666666666666666666666666666666555555542
Q ss_pred ----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHH
Q 005943 385 ----KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITL 460 (668)
Q Consensus 385 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 460 (668)
||..+|+.++.+|++.|+.++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMP----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~- 801 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR- 801 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Confidence 555555555555555555555554 255555555555555555555555555555555555555555555544321
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
.+++|..+.+.+.. +.+ .......+..++|..+|++| +..||..+|+.++..+.+.+....+..+
T Consensus 802 -~y~ka~~l~~~v~~---f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 802 -RFEKACALGEPVVS---FDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred -HHHHHhhhhhhhhh---hhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 23333332222210 000 00001112346788888888 5778988998888777777888888777
Q ss_pred HHHHHh-cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 614 AEQLLA-TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 614 ~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+.. ..+++..+|..++..+.+. .++|..++++|.+.|+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 776654 4566677888888876321 3579999999999888
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=527.06 Aligned_cols=471 Identities=22% Similarity=0.389 Sum_probs=406.8
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHhhhhcC-----CCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchH
Q 005943 34 LSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA-----RKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMY 108 (668)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 108 (668)
..++...++.++..|++.|++++|+++|+.|. .||..+|+.++.+|++.++++.+..++..|.+.|.. ||..+|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHH
Confidence 34556677777777777777777777777774 246677777777777777777777777777777766 777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhh
Q 005943 109 SAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQV 188 (668)
Q Consensus 109 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (668)
+.++..|++.|+++.|.++|++|. .||..+||+++.+|++.|+.++++ .+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~--------------------------~l 211 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAF--------------------------AL 211 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHH--------------------------HH
Confidence 777777777777777777777774 467777777777777777766332 44
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHH
Q 005943 189 HAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARK 268 (668)
Q Consensus 189 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 268 (668)
++.|.+.|+.|+..||+.++.+|++.|+.+.+.+++..+.+.+..+ |..++++|+++|++.|++++|.+
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~-----------d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-----------DTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc-----------cceeHHHHHHHHHHCCCHHHHHH
Confidence 4445557777777777777777877787777777777776555444 67777788888888888888888
Q ss_pred HHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 005943 269 LFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIV 348 (668)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~ 348 (668)
+|+.| ..+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.+ +.+.+++..|.
T Consensus 281 vf~~m------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~--~~a~~i~~~m~ 352 (697)
T PLN03081 281 VFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL--EHAKQAHAGLI 352 (697)
T ss_pred HHHhC------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch--HHHHHHHHHHH
Confidence 88888 66789999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 349 TSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+.|+.||..++++|+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccchHhHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-CCCHhHHHHHHHHHHhcCChHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVK-RGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP-ERDVVSWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 506 (668)
+.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|...|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999986 6999999999999999999999999999999997 5899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC
Q 005943 507 AIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP 557 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 557 (668)
|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|... |+..
T Consensus 513 a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 513 GRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 9999999976 5665 569999999999999999999999999976 8754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-34 Score=320.94 Aligned_cols=612 Identities=10% Similarity=0.003 Sum_probs=471.8
Q ss_pred HHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhh
Q 005943 11 RHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 11 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 87 (668)
..+...|++++|...++++.+.+. .+...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHH
Confidence 344566788888888888776552 1222334455566677888888888877643 244566667777778888888
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhh
Q 005943 88 AIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYS 165 (668)
Q Consensus 88 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~ 165 (668)
|...++.+.+.. + .+...+..+...+...|++++|.++++.+.+... .+...+..+...+...|+.. ...++...
T Consensus 348 A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 348 AIATLSPALGLD-P-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888777655 2 3456677777777788888888888887776532 24455666666667777766 33343333
Q ss_pred hhhhhcCCCchh-------hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHH
Q 005943 166 NWAASAYGNVAL-------WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGI 238 (668)
Q Consensus 166 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 238 (668)
...... ..... -....+.+..++..+.. ..+++..++..+...+...|++++|.+.|+++...++.
T Consensus 425 ~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----- 497 (899)
T TIGR02917 425 QLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD----- 497 (899)
T ss_pred hhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-----
Confidence 211000 00000 00001113344444443 23456778899999999999999999999988754432
Q ss_pred hhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 239 IVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 239 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
+...+..+...+...|++++|.+.|+.+... .+.+..++..+...+.+.|+.++|...++++...+ +.+
T Consensus 498 -------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 498 -------FFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred -------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 4567778889999999999999999998652 23356778888999999999999999999997754 345
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHH
Q 005943 319 SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIM 395 (668)
Q Consensus 319 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 395 (668)
...+..+...+...|+. +.+..+++.+.+.. +.+...+..+...+.+.|++++|...|+.+.+ .+...+..+..
T Consensus 567 ~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 567 IEPALALAQYYLGKGQL--KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred hhHHHHHHHHHHHCCCH--HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 66777888999999999 99999999887643 55677888999999999999999999988754 35667888999
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 396 GCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 396 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
++.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+.+.|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998753 4457788889999999999999999999998876 5677788888999999999999
Q ss_pred HHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 476 GLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 476 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
|...|..+.. |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++...
T Consensus 722 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 799 (899)
T TIGR02917 722 AIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK- 799 (899)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-
Confidence 9999998764 666778888999999999999999999998863 456778888999999999999999999999853
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
.+++...+..+...+.+.|+ .+|+++++++ ...| +...+..+...+...|++++|...++++++..|.++.++..+
T Consensus 800 -~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 800 -APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred -CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 34568889999999999999 8899999887 3333 556777888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 005943 632 SNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 632 ~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.++.+.|++++|.+++++|.+
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999998863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-32 Score=310.88 Aligned_cols=623 Identities=11% Similarity=0.050 Sum_probs=505.5
Q ss_pred ChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCC---hhHHHHHHHH
Q 005943 2 DLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKN---IVSWTTMVTA 78 (668)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~ 78 (668)
++..+..+...+...|++++|...++.+.+.. +.+...+......+...|++++|...|+.+.+.+ ...+..+...
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 304 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45667778888899999999999999999875 3344444445556678899999999999886532 3344556667
Q ss_pred HhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh-
Q 005943 79 YTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT- 157 (668)
Q Consensus 79 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~- 157 (668)
+...|+++.|...|+.+.+.. + .+...+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.|+.+
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-P-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 889999999999999998876 2 345677788889999999999999999998764 346778888999999999998
Q ss_pred -HHHHhhhhhhhhhcCCCchhhhhh---------hhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 158 -RKLFDQYSNWAASAYGNVALWNSM---------LSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
...|+...... ..+...+..+ ...+...+..+.+.... .......++..+.+.|++++|.++++.+
T Consensus 382 A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 382 AAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666554421 1111112111 11134444444443322 2344566778889999999999999888
Q ss_pred CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHH
Q 005943 228 PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
....+. ++.++..+...+...|++++|.+.|+++.+ ..| +...+..+...+...|++++|...
T Consensus 458 ~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 458 EKKQPD------------NASLHNLLGAIYLGKGDLAKAREAFEKALS----IEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HHhCCC------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 744332 567888999999999999999999999865 333 455677788899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK-- 384 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 384 (668)
|+++...+ +.+..++..+...+...|+. +.+...+..+.+.+ +.+...+..+...+.+.|++++|..+++.+.+
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNE--EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99998764 34677888888999999999 99999999887764 34566777899999999999999999998864
Q ss_pred -CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHH
Q 005943 385 -KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSL 463 (668)
Q Consensus 385 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 463 (668)
.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 366789999999999999999999999998764 3456778888899999999999999999988764 5567888999
Q ss_pred HHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
+..+...|++++|..+++.+.+ ++...+..+...+...|++++|+..|+++.+. .|+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999998875 35667888899999999999999999999985 466677888899999999999
Q ss_pred HHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 541 EAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
+|.+.++++.. ..+.+...+..+...|...|++++|.+.|+++ ..+++...+..+...+...|+ .+|+..++++.
T Consensus 754 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 99999999985 33456888999999999999999999999988 334577889999999999999 88999999999
Q ss_pred hcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 619 ATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 619 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
+..|+++..+..++.++...|++++|.++++++.+.++.++
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 99999999999999999999999999999999999877433
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=8.7e-25 Score=246.56 Aligned_cols=612 Identities=12% Similarity=0.072 Sum_probs=436.2
Q ss_pred hHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--CChhHH----------
Q 005943 5 RIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--KNIVSW---------- 72 (668)
Q Consensus 5 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~---------- 72 (668)
.+....+.+...++.+.|.+.+.++.... +.++..+..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 35666777778888888888888888654 34666777788888888888888888888754 322211
Q ss_pred -------HHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCCchHh
Q 005943 73 -------TTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYS--AVLKACSLSGDLDLGRLIHERITREKLEYDTVLM 143 (668)
Q Consensus 73 -------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (668)
....+.+.+.|++++|...|+.+.+.+ |+..... .........|+.++|.+.++.+.+..+ -+...+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~ 184 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLR 184 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 223345777888888888888888765 3322211 111222345888888888888887642 244556
Q ss_pred hHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhhhhhhh--------------------------cchhhHHHHHHh
Q 005943 144 NTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALWNSMLS--------------------------GGKQVHAFCVKR 195 (668)
Q Consensus 144 ~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~ 195 (668)
..+-..+...|+.+ .+.++++.............|...+. .+...+......
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 66777777777766 44454443211000000111111100 011111111112
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
.-.|.... ......+...|++++|+..|++....++. +..++..+...+.+.|++++|+..|++..+
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222211 23356678899999999999998855443 678889999999999999999999999865
Q ss_pred hhhcCCCCee---eHHH------------HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHH
Q 005943 276 WAASAYGNVA---LWNS------------MISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFA 340 (668)
Q Consensus 276 ~~~~~~~~~~---~~~~------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a 340 (668)
..|+.. .|.. ....+.+.|++++|+..|++..... +.+...+..+-..+...|+. +.|
T Consensus 332 ----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~--~eA 404 (1157)
T PRK11447 332 ----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDY--AAA 404 (1157)
T ss_pred ----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH--HHH
Confidence 334321 1221 2345678999999999999998863 23556677788899999999 999
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC------------hhhHHHHHHHHHhcCCcHHHHH
Q 005943 341 LQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD------------VVAWSGLIMGCTKHGLNSLAYL 408 (668)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~ 408 (668)
...++...+.. +.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++
T Consensus 405 ~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 405 ERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999988764 223455666666664 467899999998776431 1234556677889999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--
Q 005943 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-- 486 (668)
Q Consensus 409 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 486 (668)
.|++..+... -+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 483 ~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~ 560 (1157)
T PRK11447 483 LQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW 560 (1157)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc
Confidence 9999987642 245677788889999999999999999988754 334555555556677899999999999988642
Q ss_pred --CH---------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 487 --DV---------VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 487 --~~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
+. ..+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|++..+ .
T Consensus 561 ~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~ 632 (1157)
T PRK11447 561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---R 632 (1157)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence 11 1123456778899999999999872 345556777888899999999999999999984 3
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc------h
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP------S 626 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~ 626 (668)
.| +...+..++.+|...|++++|.+.++... ..| +...+..+..++...|++++|.++++++.+..|+++ .
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 55 57889999999999999999999999873 344 455667778888899999999999999999776544 3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..++.++...|++++|+..++....
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667789999999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.2e-22 Score=229.32 Aligned_cols=568 Identities=10% Similarity=0.039 Sum_probs=399.7
Q ss_pred hHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchH---------
Q 005943 41 GNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMY--------- 108 (668)
Q Consensus 41 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~--------- 108 (668)
.-...+.+...++.+.|.+.++++.. .|+..+..++..+.+.|+.++|...++++.+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~---P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA---PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCChHHHHHHHHHHh
Confidence 34455677789999999999998854 367788999999999999999999999999987 555443
Q ss_pred --------HHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhh-hhhcCChh--HHHHhhhhhhhhhcCCCchh
Q 005943 109 --------SAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDM-YVKCGSLT--RKLFDQYSNWAASAYGNVAL 177 (668)
Q Consensus 109 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 177 (668)
..+...+...|++++|.+.++.+.+... |+...-...... ....|+.+ .+.++.+..
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~----------- 175 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNA----------- 175 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHH-----------
Confidence 2233467889999999999999987643 232211111111 12234444 233332222
Q ss_pred hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcc------hHHHH-------------
Q 005943 178 WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVV------SWTGI------------- 238 (668)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~------------- 238 (668)
.. +-+...+..+...+...|+.++|++.|+++...... .|...
T Consensus 176 -----------------~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 176 -----------------DY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred -----------------hC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 21 224556778888889999999999999887532211 01000
Q ss_pred ----hhhcccC------------------chh-hHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHH
Q 005943 239 ----IVGCFEC------------------SCF-TLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGY 294 (668)
Q Consensus 239 ----l~~~~~~------------------~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~ 294 (668)
+..+... ++. ........+...|++++|+..|++..+ ..| +...+..+...+
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~----~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR----ANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHH
Confidence 0000000 000 011234556778999999999988866 444 566788888888
Q ss_pred HhCCChhHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 295 VLNEQNEEAITLLSHIHSSGMCI-DSYTFT------------SALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 295 ~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~------------~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
.+.|++++|+..|++..+..... +...+. ..-..+.+.|++ +.|...++.+.+.. +.+...+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~--~eA~~~~~~Al~~~-P~~~~a~~~ 390 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL--AQAERLYQQARQVD-NTDSYAVLG 390 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999998887653221 111111 123345677788 88888888888763 234556667
Q ss_pred HHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--------CcHHHHHHHHH
Q 005943 362 LIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD--------VNQFIISSVLK 430 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~ll~ 430 (668)
+...+...|++++|++.|+++.+. +...+..+...+. .++.++|...++.+...... .....+.....
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888888899999999998887642 4445666666664 45778888887765332110 01123444556
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 507 (668)
.+...|++++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+ | +...+..+...+...++.++|
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 6778899999999999888765 44566777888899999999999999988753 3 444555555566778899999
Q ss_pred HHHHHHHHHCCCCCCHH---------HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 508 IAYFQEMIQSRLKPNEI---------TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+..++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHH
Confidence 99888765432222221 123456678889999999998872 134566778899999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 579 EQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 579 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.++++ ...| +...+..++..+...|++++|++.++.+.+..|+++..+..++.++...|++++|.++++.+.+...
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999988 3344 6778889999999999999999999999999999999999999999999999999999999988765
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=7.6e-21 Score=204.54 Aligned_cols=605 Identities=10% Similarity=0.019 Sum_probs=313.0
Q ss_pred cccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--C-ChhHHHHHHHHHhcCCChhhHHH
Q 005943 14 GQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--K-NIVSWTTMVTAYTSNKRPNWAIR 90 (668)
Q Consensus 14 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 90 (668)
...|++++|...|++.++.. +-++.++..|...|.+.|+.++|+..+++..+ | |...+.. +..+ +++.+|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh---ccChhHHH
Confidence 44599999999999999876 34577888999999999999999999999865 3 3333443 3333 88899999
Q ss_pred HHHHHHhcCCCCCC-CchHHHHHHHH-----hccCChHHHHHHHHHHHHcCCCCCchHhhHH-HhhhhhcCChh--HHHH
Q 005943 91 LYNHMLEYGSVEPN-GFMYSAVLKAC-----SLSGDLDLGRLIHERITREKLEYDTVLMNTL-LDMYVKCGSLT--RKLF 161 (668)
Q Consensus 91 ~~~~m~~~~~~~p~-~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~--~~~~ 161 (668)
.|+++.+.. |+ ...+..+.... ..-.+.++|.+.++ .......|+..+.... .+.|...++++ .+++
T Consensus 130 ~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999987 54 34444444430 22334466766666 4444455556656655 88899999877 5555
Q ss_pred hhhhhhhhhcCCCch----hhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC-----CCCc
Q 005943 162 DQYSNWAASAYGNVA----LWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP-----ERDV 232 (668)
Q Consensus 162 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~ 232 (668)
..+.+.......... .|...++. ...... .+..++-+...+..+...|.+.|+.++|.++++++. .++.
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al-~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLAL-QSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHH-hchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 555552111111111 11111111 122222 223444577788899999999999999999999988 2444
Q ss_pred chHHHHhhhcccC---------------chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHH--HH
Q 005943 233 VSWTGIIVGCFEC---------------SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISG--YV 295 (668)
Q Consensus 233 ~~~~~~l~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~--~~ 295 (668)
..|...+.-.... -....-.++..+.+.+.++.++++.. ..|.... ..+.. ..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~r~~~~~ 353 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--------TLPANEM--LEERYAVSV 353 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--------CCCcchH--HHHHHhhcc
Confidence 4443333221110 11112223566666777776665533 2222221 12221 12
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-C-CCCccchHHHHHHHHHhcCC--
Q 005943 296 LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTS-G-YELDYIVGSNLIDLYARLGN-- 371 (668)
Q Consensus 296 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~-- 371 (668)
..+...++...++.|.... .-+....-.+--.....|+. +.+..++...... + -.++....+.++..|.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQS--REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccH--HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 2345555555555555431 11333333333334455555 6666666665542 1 12233344456666666655
Q ss_pred -hHHHHHHHccCCC----------------------------C--ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 005943 372 -VKSALELFHRLPK----------------------------K--DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV 420 (668)
Q Consensus 372 -~~~a~~~~~~~~~----------------------------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 420 (668)
...+..+-..+.. + +...|..+..++.. ++.++|+..+.+..... |
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2223222111111 1 22333444444433 45555555444444332 3
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCH---hHHHHHHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDV---VSWTGIIVG 497 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~ 497 (668)
+......+..++...|++++|...++.+... +|+...+..+..++.+.|++++|...+++..+.++ ..+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3332222233334455555555555544322 22222333344444555555555555554443111 111122222
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
....|++++|+..+++..+ +.|+...+..+..++.+.|++++|...+++.. ...| +...+..+..++...|+++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHH
Confidence 2233555555555555554 23444445555555555555555555555554 2233 2444445555555555555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 577 DAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 577 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+|++.+++. ...| +...+..+..++...|++++|+..+++++++.|++..+....++...+..+++.|.+.+++.-
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 555555544 2222 334445555555555555555555555555555555555555555555555555555554443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=3.6e-20 Score=199.36 Aligned_cols=544 Identities=11% Similarity=0.011 Sum_probs=359.5
Q ss_pred HHcCCChhHHHHhhhhcCC--C-ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHH
Q 005943 48 YADFTSLNDAHKLFDEMAR--K-NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLG 124 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 124 (668)
+...|++++|...|+...+ | +...+..+.+.|.+.|++++|+..+++..+.. |+...|..++..+ ++.++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhH
Confidence 3345999999999999854 3 56688999999999999999999999999987 7766666665433 889999
Q ss_pred HHHHHHHHHcCCCCCchHhhHHHhh--------hhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhC
Q 005943 125 RLIHERITREKLEYDTVLMNTLLDM--------YVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRG 196 (668)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 196 (668)
..+++++.+..+. +..++..+... |.+.+..... +. .....
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~A-----------------------------L~-lr~~~ 176 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQ-----------------------------LN-DATFA 176 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHH-----------------------------HH-HhhhC
Confidence 9999999987543 22333222222 4433222222 22 11122
Q ss_pred CCCChhhHHHH-HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHc-CCCHHHHHHHHHHhh
Q 005943 197 FEKEDVTLTSL-IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSN-CNVLCEARKLFDQYS 274 (668)
Q Consensus 197 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 274 (668)
..|+....... ...|.+.|++++|+++++++.+.++. +......|...|.. .++ +.+..+++..
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~- 242 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL------------SAAERRQWFDVLLAGQLD-DRLLALQSQG- 242 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhhCH-HHHHHHhchh-
Confidence 22334434444 77788888888888888877755543 23334445555555 244 5555553321
Q ss_pred hhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCHHHHHHHH---------------------------
Q 005943 275 SWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC-IDSYTFTSAL--------------------------- 326 (668)
Q Consensus 275 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~ll--------------------------- 326 (668)
...+...+..+...+.+.|+.++|..+++++...-.. |+..++.-++
T Consensus 243 -----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (987)
T PRK09782 243 -----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVG 317 (987)
T ss_pred -----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHH
Confidence 3345555666666666666666666666665433211 2222222211
Q ss_pred ---HHHHhcccc---------------------------chHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHH
Q 005943 327 ---KACINLLNF---------------------------NSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 327 ---~~~~~~~~~---------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
..+.+.+.. ...++...+..|.+.. +-+.....-+.....+.|+.++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 318 ATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHH
Confidence 111222222 0011112222221110 112233333344456778999999
Q ss_pred HHHccCCC-C-----ChhhHHHHHHHHHhcCC---cHHHHHH----------------------HHHHHHc-CC-CC--c
Q 005943 377 ELFHRLPK-K-----DVVAWSGLIMGCTKHGL---NSLAYLL----------------------FRDMINS-NQ-DV--N 421 (668)
Q Consensus 377 ~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~m~~~-~~-~~--~ 421 (668)
++|+.... + +....+-++..|.+.+. ..++..+ +...... +. ++ +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 99988765 2 22334466777777665 3344333 1111111 12 23 4
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHH
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCG 499 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~ 499 (668)
...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. |+...+..+..++.
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 5566666666655 78888998777766553 5544443445555789999999999997654 44455667778889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.|++++|...+++..+.. |+. ..+..+.......|++++|...+++.. ...|+...+..+..++.+.|++++|
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999863 443 334444455567799999999999998 5578888999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 579 EQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 579 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+..+
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999988 4455 5567777888899999999999999999999999999999999999999999999999999987765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-19 Score=171.61 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=297.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
-..+|+.+...+-..|++++|+.+++.+.+.++. ....|..+..++...|+.+.|...|.+..+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~------------fida~inla~al~~~~~~~~a~~~~~~alq---- 178 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK------------FIDAYINLAAALVTQGDLELAVQCFFEALQ---- 178 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch------------hhHHHhhHHHHHHhcCCCcccHHHHHHHHh----
Confidence 3567777888888888888888888887755443 456677777777777777777777777755
Q ss_pred CCCCeeeHHHHHH-HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch
Q 005943 280 AYGNVALWNSMIS-GYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV 358 (668)
Q Consensus 280 ~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (668)
..|+.....+-+. -+...|+.++|...|.+..+.. | .-...
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p------------------------------------~fAia 220 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--P------------------------------------CFAIA 220 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--C------------------------------------ceeee
Confidence 5555443333222 2334566666666666655421 1 12344
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN-QFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 434 (668)
|+.|...+...|+...|+.-|++..+-|+ ..|-.|-..|...+.+++|...|.+.... .|+ ...+..+...|..
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYE 298 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEec
Confidence 55566667778888888888888776443 46777778888888888888888776543 444 4566677777888
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
.|.++.|..-+++..+.. +.-+..|+.|..++-..|+..+|.+.|.+... | ...+.+.|...|...|.++.|..+|
T Consensus 299 qG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred cccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 899999999998887764 34467899999999999999999999998774 4 4567888999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 005943 512 QEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK 588 (668)
Q Consensus 512 ~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 588 (668)
....+ +.|.- ..++.|...|-..|++++|+..|++.. .++|+ ...|+.+...|...|+.+.|.+.+.+. .+.
T Consensus 378 ~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 378 LKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 99988 67764 478999999999999999999999998 67887 678999999999999999999999887 566
Q ss_pred CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 589 PD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 589 p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
|. ...++.|...+...|+..+|++.|+.++++.|+.+.+|..++..+.---+|.+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 64 45788899999999999999999999999999999999999887765555554
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=5.5e-18 Score=179.84 Aligned_cols=422 Identities=11% Similarity=0.009 Sum_probs=296.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC
Q 005943 203 TLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG 282 (668)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 282 (668)
.+......+.+.|++++|+..|++....++ ++..|..+...|.+.|++++|++.++...+ ..|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p 191 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-------------DPVYYSNRAACHNALGDWEKVVEDTTAALE----LDP 191 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCC
Confidence 355667788999999999999998875543 445788889999999999999999999876 555
Q ss_pred -CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 283 -NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 283 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
+...|..+..++...|++++|+.-|......+-..+. ....++..... ..+........+. -+++...+..
T Consensus 192 ~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~------~~a~~~~~~~l~~-~~~~~~~~~~ 263 (615)
T TIGR00990 192 DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK------KFAESKAKEILET-KPENLPSVTF 263 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH------HHHHHHHHHHHhc-CCCCCCCHHH
Confidence 4567888899999999999999988776554211111 11111111111 1111111111111 1122222222
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHH---HHhcCCcHHHHHHHHHHHHcC-CCC-cHHHHHHHHHHhc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMG---CTKHGLNSLAYLLFRDMINSN-QDV-NQFIISSVLKVCS 433 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~ 433 (668)
+ ..+...........-+....+.+. ..+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+.
T Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 264 V-GNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred H-HHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 2 222222222222111221111111 111111111 123478899999999998865 234 3456677777788
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
..|++++|...++...+.. +.....|..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999988764 33456788888899999999999999998764 3577888999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 005943 511 FQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK 588 (668)
Q Consensus 511 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 588 (668)
|++..+. .| +...+..+..++.+.|++++|+..+++... ..+.+...+..+..++...|++++|.+.|++. ...
T Consensus 422 ~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 422 YQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999985 45 456778888899999999999999999884 22335788999999999999999999999986 333
Q ss_pred CCH-H-------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 589 PDK-T-------IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 589 p~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|+. . .++.....+...|++++|.++++++++++|++..++..++.++.+.|++++|++++++..+..
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 421 1 112222223446999999999999999999999999999999999999999999999987653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.9e-19 Score=168.88 Aligned_cols=427 Identities=15% Similarity=0.121 Sum_probs=320.8
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
...|..-..+.|++++|++.....-..|+. +....-.+-..+....+++.....-....+. ...-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t------------~~~~llll~ai~~q~~r~d~s~a~~~~a~r~---~~q~ 115 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT------------NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK---NPQG 115 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC------------cccceeeehhhhhcccchhhhhhhhhhhhhc---cchH
Confidence 455667778899999999988766644432 1222222333344444444433222221110 1223
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHH-H
Q 005943 284 VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCI-DSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS-N 361 (668)
Q Consensus 284 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 361 (668)
..+|..+...+-..|++++|+.+|+.+++. +| ....|..+..++...|+. +.+...+....+ +.|+..... .
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~--~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDL--ELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCC--cccHHHHHHHHh--cCcchhhhhcc
Confidence 456677777777777777777777777663 34 345666666777777777 666666655544 234333222 2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHhccccc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN-QFIISSVLKVCSCLAS 437 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 437 (668)
+...+...|++++|...+.+..+- =.+.|+.|...+-..|+...|++.|++.+.. .|+ ...|..+-..|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 334445568899988888776543 2357999999999999999999999998754 344 3456667777777778
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
++.|..-+.+..... +.....+..+.-.|...|..+-|+..|++..+ |+ ...|+.|..++-..|+..+|...|.+.
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 888887777665543 33455666777778899999999999999875 54 568999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-
Q 005943 515 IQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD- 590 (668)
Q Consensus 515 ~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 590 (668)
+. +.|+. .+.+.|...+...|.+++|..+|.... .+.|. ....+.|...|.++|++++|+..+++. .++|+
T Consensus 347 L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 347 LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 88 46664 478899999999999999999999987 66776 678899999999999999999999988 67786
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
...|+.+...|-..|+...|.+.+.+++..+|.-..++..|+.+|..+|++.+|+.-++...+..+.+|
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 458899999999999999999999999999999999999999999999999999999999999888444
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.3e-16 Score=157.95 Aligned_cols=578 Identities=14% Similarity=0.107 Sum_probs=391.6
Q ss_pred hhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC------CChhHHHHHHHHHhcCCChhhHHHHH
Q 005943 19 IKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR------KNIVSWTTMVTAYTSNKRPNWAIRLY 92 (668)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~ 92 (668)
.+.|.+.|...++.. ++++-.+---....-..|++..|+.+|..... +|+. -.+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 588888888888775 34433322222333356889999999988533 2332 22234456788889999999
Q ss_pred HHHHhcCCCCCC-CchHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhh
Q 005943 93 NHMLEYGSVEPN-GFMYSAVLKACSLSGD---LDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSN 166 (668)
Q Consensus 93 ~~m~~~~~~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~ 166 (668)
.+..+.+ |+ ..++..|...-....+ +..+.+++....... .-++...+.|-..|.-.|+.. ..+...+..
T Consensus 223 ~ralqLd---p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD---PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC---hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9998876 42 2233333322233333 444455554444322 235566667777777777766 222111111
Q ss_pred hhhhcCCCchhhhhhhhcchhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhccc
Q 005943 167 WAASAYGNVALWNSMLSGGKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFE 244 (668)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 244 (668)
.-.. .-..+|-.+.++|-..|++++|...|.+..+.+...
T Consensus 299 ----------------------------~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---------- 340 (1018)
T KOG2002|consen 299 ----------------------------NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---------- 340 (1018)
T ss_pred ----------------------------hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----------
Confidence 1100 123457788999999999999999998888544332
Q ss_pred CchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCH
Q 005943 245 CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN-VALWNSMISGYVLNE----QNEEAITLLSHIHSSGMCIDS 319 (668)
Q Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~ 319 (668)
....+--|..+|.+.|+++.+...|+.+.. ..|| ..+...|...|...+ ..+.|..++.+....- ..|.
T Consensus 341 -~~l~~~GlgQm~i~~~dle~s~~~fEkv~k----~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 341 -FVLPLVGLGQMYIKRGDLEESKFCFEKVLK----QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred -ccccccchhHHHHHhchHHHHHHHHHHHHH----hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 134455688999999999999999999966 4554 344444445555553 3466666666655432 3455
Q ss_pred HHHHHHHHHHHhccccchHHHHHHH----HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC-------Ch-
Q 005943 320 YTFTSALKACINLLNFNSRFALQVH----GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-------DV- 387 (668)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~- 387 (668)
..|..+-..+-..... .....+ +.+...+-.+.+...|.+...+...|.+..|...|.+.... +.
T Consensus 415 ~a~l~laql~e~~d~~---~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPW---ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred HHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 6666555555444332 223333 34556677788999999999999999999999999876532 22
Q ss_pred -----hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHH
Q 005943 388 -----VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLT 461 (668)
Q Consensus 388 -----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 461 (668)
.+-..+....-..++.+.|.+.|..+... .|+-.... .+.......++..+|...+....... ..++...+
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 12334556666778999999999999876 34443322 22222233467788888888776654 45666677
Q ss_pred HHHHHHHhcCChHHHHHHhccCC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHH
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMP-----ERDVVSWTGIIVGCGQ------------NGRAKEAIAYFQEMIQSRLKPNEI 524 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~ 524 (668)
.+.+.+.+...+..|..-|..+. .+|+.+.-.|.+.|.+ .+..++|+++|.+.+... +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 77778888888888877554443 2465555556665532 246788999999988853 44667
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM----PFKPDKTIWASMLKA 600 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 600 (668)
.-+.+.-.++..|++..|..+|...... ..-...+|-.+.++|..+|++..|+++|+.. ..+.+......|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 7788888899999999999999999854 2345678889999999999999999999876 234578888999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-------------------CChhhHHHHHHHHHhcCC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL-------------------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~ 656 (668)
+.+.|.+.+|.+....+....|.++...+.++.+..+. +..+.|.++|..|.+.+.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999888888766543 346777777777776655
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.4e-18 Score=175.38 Aligned_cols=290 Identities=11% Similarity=0.083 Sum_probs=226.9
Q ss_pred HHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhccccch
Q 005943 365 LYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN---QFIISSVLKVCSCLASL 438 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~ 438 (668)
.+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 455668888888888887643 445677788888888888888888888877543322 24567777788888888
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC------HhHHHHHHHHHHhcCChHHHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD------VVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
+.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887653 45667788888889999999999988888764 21 12355677788899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 511 FQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 511 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ..++..++.+|.+.|++++|...++++ ..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998853 233557788888999999999999999999843 343 466888999999999999999999987 45
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCChhhHHHHHHHHHhcCC-CCCc
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT---LGMWDSLSKVRKAGKKLGE-KKAG 660 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~-~~~~ 660 (668)
.|+...+..++..+.+.|++++|..+++++.+..|++.. +..+...+.. .|+.+++..+++++.++++ ++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 677777788888899999999999999999999998764 4444444443 5699999999999999888 7775
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.1e-16 Score=146.33 Aligned_cols=426 Identities=11% Similarity=0.036 Sum_probs=284.5
Q ss_pred hHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcC--CChhHH-HHhhhhc-----------------
Q 005943 5 RIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADF--TSLNDA-HKLFDEM----------------- 64 (668)
Q Consensus 5 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~a-~~~~~~~----------------- 64 (668)
+-++++.. ...|.++++--+++.|.+.|++.+...-..|++.-+-. .++.-| ++.|-.|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34455543 34678999999999999999888877777776654432 222211 2223222
Q ss_pred ------CCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005943 65 ------ARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEY 138 (668)
Q Consensus 65 ------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 138 (668)
..++..+|..||.++|+--..+.|.++|++-.+..+. .+..+||.+|.+-+-..+ .+++.+|.+..+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 2235668999999999999999999999999987767 899999999987654333 78999999999999
Q ss_pred CchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChH
Q 005943 139 DTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEID 218 (668)
Q Consensus 139 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 218 (668)
|..|+|+++.+.++.|++..+ ...+.+++.+|.+.|++|+..+|..+|..+++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~a----------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDA----------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred chHhHHHHHHHHHHhcchHHH----------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 999999999999999987611 1234578888999999999999999999999998875
Q ss_pred H-HHHHhhccC--------CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhh--hcCCCC---e
Q 005943 219 D-GLALFNFMP--------ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWA--ASAYGN---V 284 (668)
Q Consensus 219 ~-A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~---~ 284 (668)
+ |..++.++. +|-..+ |...|...+..|....+.+-|.++-.-+.... .-..|+ .
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~-----------d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPT-----------DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCc-----------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 4 444444433 222111 77888899999999999999988876653211 112222 2
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHH
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLID 364 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (668)
.-|..+....|+....+.....|+.|+..-.-|++.+...++++....+.+ +...+++..++..|...+.....-++.
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~--e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL--EVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc--hhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 235667778888999999999999999998999999999999999999999 999999999998886555444444444
Q ss_pred HHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhc--CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKH--GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.+++..- .++...-..+-...++. .-.+.....-..|. .........+.+.-.+.+.|..++|.
T Consensus 477 ~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 477 LLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred HHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHH
Confidence 4433220 11111111111111110 00111111112222 22334444444555556666666666
Q ss_pred HHHHHHHHhCC-CCchhHHH---HHHHHHHhcCChHHHHHHhccCCC
Q 005943 443 QVHAFCVKRGF-EKEDITLT---SLIDMYLKCGEIDDGLALFKFMPE 485 (668)
Q Consensus 443 ~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~ 485 (668)
+++..+.+.+. .|.....| -+++.-.+...+..|..+++-+..
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666644332 22222333 444555556666666666665543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2e-17 Score=166.97 Aligned_cols=294 Identities=15% Similarity=0.089 Sum_probs=193.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcC
Q 005943 291 ISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLG 370 (668)
Q Consensus 291 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (668)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++ +.+..+++.+...+..++..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEV--DRAIRIHQNLLSRPDLTREQ------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcH--HHHHHHHHHHhcCCCCCHHH-------------
Confidence 445567788888888888887753 12333455555555555555 55555555444422111100
Q ss_pred ChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHH
Q 005943 371 NVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVK 450 (668)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 450 (668)
....+..+...|.+.|++++|..+|+++.+.. +++..++..+...+.+.|++++|...++.+.+
T Consensus 106 ---------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 106 ---------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 01223444444555555555555555554331 22344445555555555555555555555544
Q ss_pred hCCCCc----hhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005943 451 RGFEKE----DITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 451 ~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
.+..+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|+++++++.+.+.....
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 332211 12345566777788888888888887764 3 3557777888999999999999999999875322223
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACE 602 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 602 (668)
.++..+..++...|++++|...++++.. ..|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 5678888999999999999999999884 3677777788999999999999999999876 56789888888887765
Q ss_pred h---hCCHHHHHHHHHHHHh
Q 005943 603 T---HNNTKLVSIIAEQLLA 619 (668)
Q Consensus 603 ~---~~~~~~a~~~~~~~~~ 619 (668)
. .|+.+++..+++++.+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 4 5588888888888876
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=2.7e-16 Score=169.91 Aligned_cols=401 Identities=9% Similarity=0.010 Sum_probs=301.3
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++......+....-.|+.++|++++...... ...+...+..+...+...|++++|..++++..+.. +.+......+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566677888899999999999999998431 22234458889999999999999999999988752 2345566777
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCC
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGL 402 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 402 (668)
...+...|+. +.|...++...+.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+..++...+.
T Consensus 90 a~~l~~~g~~--~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQY--DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 7888899999 99999999998773 33444 778888999999999999999988753 55566677888888999
Q ss_pred cHHHHHHHHHHHHcCCCCcH------HHHHHHHHHh-----ccccch---HhHHHHHHHHHHh-CCCCchh-HHH-H---
Q 005943 403 NSLAYLLFRDMINSNQDVNQ------FIISSVLKVC-----SCLASL---RRGKQVHAFCVKR-GFEKEDI-TLT-S--- 462 (668)
Q Consensus 403 ~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-~--- 462 (668)
.+.|+..++.... .|+. ......+... ...+++ ++|...++.+.+. ...|+.. .+. .
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876653 2321 1112222222 122334 6778888888754 2233221 111 1
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCC---Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHh
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPERD---VV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-----EITFLGVLSAC 533 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~ 533 (668)
.+.++...|++++|+..|+.+.+.+ +. ....+..+|...|++++|+..|+++.+. .|. ......+..++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHH
Confidence 1234457799999999999988632 11 2223577899999999999999998874 332 23466667788
Q ss_pred hcCCCHHHHHHHHHhcccccC----------CCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYG----------LEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
...|++++|..+++.+..... ..|+ ...+..++..+...|++++|+++++++ ...| +...+..+.
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999885310 1122 234567788999999999999999998 3334 667888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
..+...|++++|++.++++++.+|++...+..++..+...|++++|..+++++.+..+.++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 8999999999999999999999999999999999999999999999999999998776333
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=3.3e-16 Score=165.51 Aligned_cols=358 Identities=11% Similarity=-0.004 Sum_probs=258.7
Q ss_pred HHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccc
Q 005943 257 YSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFN 336 (668)
Q Consensus 257 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (668)
+.+..+++.-.-+|....+.......+......++..+.+.|++++|..+++........+ ...+..+..+....|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~- 92 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP- 92 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH-
Confidence 3455556555555555433222222233445556777888899999999988887764333 33444445666668888
Q ss_pred hHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 005943 337 SRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDM 413 (668)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 413 (668)
+.|...++.+.... +.+...+..+...+...|++++|...+++... | +...+..+...+...|+.++|...++.+
T Consensus 93 -~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 -DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred -HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 88888888877653 33455677788888899999999999888764 3 5567888888899999999999999888
Q ss_pred HHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhH
Q 005943 414 INSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVS 490 (668)
Q Consensus 414 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~ 490 (668)
......+....+ .+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..+++... | +...
T Consensus 171 ~~~~P~~~~a~~-~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPPRGDMIA-TC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCCCHHHHH-HH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 766543333222 22 34677899999999888877664333444455566778889999999988887764 3 4667
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHH
Q 005943 491 WTGIIVGCGQNGRAKE----AIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYC 564 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 564 (668)
+..+...+...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++... ..|+ ...+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 7788888899998885 78889888874 454 45788888889999999999999998874 3554 566777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKPDKTIW-ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+..+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...|+++.+..|++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 888899999999999999887 345655443 3345667888999999999999999888753
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.3e-15 Score=158.07 Aligned_cols=451 Identities=10% Similarity=0.046 Sum_probs=294.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCc--hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhh
Q 005943 72 WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGF--MYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDM 149 (668)
Q Consensus 72 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 149 (668)
|...|. ..++|++..|+..|++..+.. |+.. .+ .++..+...|+.++|...++... .|+..
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~-------- 100 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNI-------- 100 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCC--------
Confidence 443333 467888888888888888876 5542 33 77777778888888888888775 11111
Q ss_pred hhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC
Q 005943 150 YVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE 229 (668)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 229 (668)
+......+...+...|++++|+++|+++.+
T Consensus 101 --------------------------------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 101 --------------------------------------------------SSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred --------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111122234567778899999999998886
Q ss_pred CCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH
Q 005943 230 RDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH 309 (668)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 309 (668)
.++. ++.++..++..+...++.++|++.++++.. ..|+...+-.++..+...++..+|+..+++
T Consensus 131 ~dP~------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 131 KDPT------------NPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred hCCC------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5554 566667778888888999999999998865 556655554443444445566569999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhh
Q 005943 310 IHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVA 389 (668)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (668)
+.+.. +-+...+..+..++.+.|-. ..+.++... .|+..+-...... ..+.|.+..+....++..
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~--~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~- 259 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIV--EPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS- 259 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCc--HHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-
Confidence 88763 22344455555666665555 444433322 1111111100000 011111111111000000
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc-CCCCcHH-----HHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINS-NQDVNQF-----IISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSL 463 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 463 (668)
- - .+.--.+.|+.-++.+... +..|... ...-.+-++...++..++...++.+...+.+....+-.++
T Consensus 260 ~---~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 E---T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred c---h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 0001234455555665542 2223221 1223344677788899999999999888877677788889
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC-
Q 005943 464 IDMYLKCGEIDDGLALFKFMPER---------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-----------KPN- 522 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~- 522 (668)
.++|...+++++|..+|.++..+ +......|.-++...+++++|..+++++.+.-- .||
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 99999999999999999987542 222346788899999999999999999987311 122
Q ss_pred -HH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 523 -EI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 523 -~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
-. .+..++..+...|+..+|++.++++.. .-+-|......+.+++...|.+.+|.+.++.. ...| +..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 22 345566678899999999999999974 33447889999999999999999999999776 3455 455666677
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.++...+++++|..+.+.+.+..|+++.+-
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 778888999999999999999999987443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.8e-15 Score=160.72 Aligned_cols=249 Identities=12% Similarity=0.017 Sum_probs=173.8
Q ss_pred CChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHH
Q 005943 370 GNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 443 (668)
+.+++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555666655554421 23345566666667777777777777766542 1224455666666667777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK 520 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 520 (668)
.++...+.. +.+...+..+...+...|++++|...|++..+ | +...+..+..++.+.|++++|+..|++..+. .
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 777766653 44567778888888888899999888887764 3 4566777888888899999999999988874 4
Q ss_pred C-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-h-------HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005943 521 P-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-E-------HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD 590 (668)
Q Consensus 521 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 590 (668)
| +...+..+..++...|++++|...|++... +.|+. . .++.....+...|++++|.+++++. ...|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4 456788888888899999999999888773 33321 1 1122223344468999999999876 44453
Q ss_pred -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 591 -KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 591 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
...+..+...+.+.|++++|...|+++.++.+...
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 44677888888999999999999999988776543
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1e-14 Score=147.33 Aligned_cols=558 Identities=11% Similarity=0.041 Sum_probs=370.2
Q ss_pred hhHHHHhhhhcCCCChh-HHHHHHHHH--hcCCChhhHHHHHHHHHhcCC-CCCCCchHHHHHHHHhccCChHHHHHHHH
Q 005943 54 LNDAHKLFDEMARKNIV-SWTTMVTAY--TSNKRPNWAIRLYNHMLEYGS-VEPNGFMYSAVLKACSLSGDLDLGRLIHE 129 (668)
Q Consensus 54 ~~~a~~~~~~~~~~~~~-~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 129 (668)
++.|...|....+.++. ....+.+++ ...|++..|+.+|........ ..||.. -.+-.++.+.|+.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 58888888887553222 223344443 456899999999999766441 114432 223355578999999999999
Q ss_pred HHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHH
Q 005943 130 RITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSL 207 (668)
Q Consensus 130 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 207 (668)
...+-.+ -++.++..|--.-....+.+ ...+..+.. .-...+ -++...+.|
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~------------------------ay~~n~--~nP~~l~~L 276 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQR------------------------AYKENN--ENPVALNHL 276 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHH------------------------HHhhcC--CCcHHHHHH
Confidence 9886543 12222222211111111111 111111111 111112 356677888
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCe--e
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNV--A 285 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 285 (668)
...|.-.|+++.+..+...+....... -+ -...|.-+.++|...|++++|...|....+ ..|+. .
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~---~~------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----~~~d~~~l 343 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENK---SI------KAESFYQLGRSYHAQGDFEKAFKYYMESLK----ADNDNFVL 343 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhh---HH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cCCCCccc
Confidence 899999999999999988777433110 00 346688899999999999999999998865 44544 4
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCC---CCccchHHHH
Q 005943 286 LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY---ELDYIVGSNL 362 (668)
Q Consensus 286 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l 362 (668)
.+--+.+.+.+.|+.+.+...|+..... .+-+..|..++-..|...+.- ......-..+...+. +.|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~--~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKK--QEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhh--hHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4556788999999999999999998874 233445555555555554322 222233333333333 3355566555
Q ss_pred HHHHHhcCCh------HHHHHHHccCC-CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc---CCCCcH------HHHH
Q 005943 363 IDLYARLGNV------KSALELFHRLP-KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINS---NQDVNQ------FIIS 426 (668)
Q Consensus 363 ~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~ 426 (668)
...+.....+ ..|.+++.... ...+...|.+.......|++++|...|...... ...++. .+--
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 5555544333 33333333322 246677888999999999999999999987655 223333 2233
Q ss_pred HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC
Q 005943 427 SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 427 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 503 (668)
.+.......++.+.|.+.+..+.+.. +.-+..|-.+.-..-..++..+|...+..... .++..+..+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 34455667789999999999988763 22223333333222334677788888887764 566677778878888888
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc------------CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 504 AKEAIAYFQEMIQS-RLKPNEITFLGVLSACRH------------AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 504 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
+..|.+-|....+. ...+|..+...|...|.. .+..+.|+++|.+..+ .-+.|...-+-+.-+++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 88888877666554 224677777777665532 2346788888888874 33347888889999999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 571 QAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT--SPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
..|++.+|..+|.+.. ......+|-.+...|...|++-.|+++|+...+. ..+++.+...|++++.+.|++.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999883 2235567889999999999999999999999883 35578899999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 005943 647 VRKAGKKLGEKKA 659 (668)
Q Consensus 647 ~~~~~~~~~~~~~ 659 (668)
.+.......+.+|
T Consensus 738 ~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 738 ALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHhCCccc
Confidence 9998887777444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5e-15 Score=160.16 Aligned_cols=406 Identities=10% Similarity=0.006 Sum_probs=302.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
.+..-..-.+......|+.++|++++......++. +...+..+...+...|++++|..+|++..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~------------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--- 77 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQL------------PARGYAAVAVAYRNLKQWQNSLTLWQKALS--- 77 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 34444555677788899999999999988753322 455688999999999999999999999866
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..| +...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+. +.|...++.+.+.... +..
T Consensus 78 -~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~--~~Al~~l~~al~~~P~-~~~ 151 (765)
T PRK10049 78 -LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH--WDELRAMTQALPRAPQ-TQQ 151 (765)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH--HHHHHHHHHHHHhCCC-CHH
Confidence 444 45567788888999999999999999998762 33444 77777888889999 9999999999886432 445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChh--------hHHHHHHHHHh-----cCCc---HHHHHHHHHHHHc-CCCC
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVV--------AWSGLIMGCTK-----HGLN---SLAYLLFRDMINS-NQDV 420 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~ 420 (668)
.+..+..++...+..+.|.+.++.... ++. ....++..... .+++ ++|++.++.+... ...|
T Consensus 152 ~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 152 YPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 555677888889999999999988776 211 12222332221 1223 6788889988864 2233
Q ss_pred cHH-HHH----HHHHHhccccchHhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-----
Q 005943 421 NQF-IIS----SVLKVCSCLASLRRGKQVHAFCVKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----- 487 (668)
Q Consensus 421 ~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----- 487 (668)
+.. .+. ..+.++...++.++|...|+.+.+.+.+ |+ .....+..+|...|++++|+..|+++.. |.
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 321 111 1133445679999999999999887632 22 2223357789999999999999998764 22
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-----------LKPNE---ITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
......+..++...|++++|...++++.+.. -.|+. ..+..+...+...|++++|++.++++..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 2345566778899999999999999998752 11332 2455677788899999999999999984
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
..+-+...+..++.++...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++++..|+++.+..
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33335888999999999999999999999988 45565 556666777788999999999999999999999985544
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=2.7e-16 Score=144.86 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=210.3
Q ss_pred HHHHhcCChHHHHHHHccCCCCChhhHHHHHH-----HHHhc-CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc
Q 005943 364 DLYARLGNVKSALELFHRLPKKDVVAWSGLIM-----GCTKH-GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS 437 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~-----~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 437 (668)
..+.+.|+++.|.++++-+.++|..+-.+... -|.+. .++..|.+.-+..+... +-+....+.--+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35778999999999998888765544333222 22222 34555655544443221 1222222222223345689
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
+++|...+++............||. .-.+-..|+.++|++.|-++.. .++...-.+...|-...+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999998887665545555553 3346678999999999987653 56777778888899999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH
Q 005943 515 IQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI 593 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 593 (668)
... ++.|+.....|...|-+.|+...|.+.+-+--+ -++-+.++..-|...|....-+++|..+|++. -+.|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 764 455677889999999999999999998776653 56668999999999999999999999999998 47899999
Q ss_pred HHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 594 WASMLKACE-THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 594 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
|..++..|. +.|++++|..+|+.+....|.+..++..|++++...|.. ++.++-+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 999998865 689999999999999999999999999999999998863 3444433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=8.8e-16 Score=162.31 Aligned_cols=352 Identities=11% Similarity=-0.050 Sum_probs=273.9
Q ss_pred HhCCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCCh
Q 005943 295 VLNEQNEEAITLLSHIHSSG--MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNV 372 (668)
Q Consensus 295 ~~~~~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (668)
.+..+|+..--.|....++. -.-+......++..+...|+. +.+..++.........+....+ .++.+....|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~ 92 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDET--DVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQP 92 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCc--chhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCH
Confidence 44555555444443332210 112233455567788888998 9999999888877655544444 455667789999
Q ss_pred HHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH
Q 005943 373 KSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV 449 (668)
Q Consensus 373 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 449 (668)
++|...++++.. | +...+..+...+.+.|++++|...+++..... +.+...+..+...+...|+.++|...++.+.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999875 2 55678888899999999999999999998753 3346677888889999999999999999887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005943 450 KRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 525 (668)
..... +...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 66422 33333333 3478899999999999987642 23344556778899999999999999999853 334567
Q ss_pred HHHHHHHhhcCCCHHH----HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 526 FLGVLSACRHAGLVEE----AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+..+...+...|++++ |...+++... ..| +...+..+...+.+.|++++|...+++. ...| +...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7888889999999986 8999999883 456 4778999999999999999999999988 3445 455677788
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++.+.|++++|...++++.+..|.+...+..++.++...|++++|...+++..+..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8899999999999999999999999887777788899999999999999999988766
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.8e-13 Score=145.07 Aligned_cols=438 Identities=10% Similarity=-0.014 Sum_probs=272.0
Q ss_pred HHHHcCCChhHHHHhhhhcCC--CCh--hHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHH-HH--HHHHhcc
Q 005943 46 SMYADFTSLNDAHKLFDEMAR--KNI--VSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYS-AV--LKACSLS 118 (668)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-~l--l~~~~~~ 118 (668)
-...+.|+++.|+..|++..+ |+. ..+ .++..+...|+.++|+..+++... |+...+. .+ ...+...
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-----p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-----SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHc
Confidence 345688888899988888865 332 133 777888888888999888888872 4333332 22 4566777
Q ss_pred CChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCC
Q 005943 119 GDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFE 198 (668)
Q Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (668)
|++++|.++++.+.+..+.
T Consensus 116 gdyd~Aiely~kaL~~dP~------------------------------------------------------------- 134 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT------------------------------------------------------------- 134 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-------------------------------------------------------------
Confidence 8999999999888776431
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
+...+..++..+...++.++|++.++.+...++. ...+..++..+...++..+|++.++++..
T Consensus 135 -n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-------------~~~~l~layL~~~~~~~~~AL~~~ekll~--- 197 (822)
T PRK14574 135 -NPDLISGMIMTQADAGRGGVVLKQATELAERDPT-------------VQNYMTLSYLNRATDRNYDALQASSEAVR--- 197 (822)
T ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------------hHHHHHHHHHHHhcchHHHHHHHHHHHHH---
Confidence 2233345566677778888888888877765542 22333444444445666558888888765
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..| +...+..+..++.+.|-...|.++..+- |+-.+=.... ..-.......++.+..++..
T Consensus 198 -~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~-----------~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 198 -LAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYR-----------QLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHH-----------HHHHHHHHHHHhhccccccc
Confidence 445 4555667777778888877777666542 2111111000 00000011111111111100
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCC----C-CC--h---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLP----K-KD--V---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS 427 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~-~~--~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 427 (668)
--. +---.+.|+.-++.+. . |. . .+.--.+-++...|+..++++.|+.|...+.+....+-..
T Consensus 260 ~~~-------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 ETE-------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred chh-------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 0001122222222211 1 11 0 1112234456666777777777777777776656667777
Q ss_pred HHHHhccccchHhHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C--------------
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRG-----FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-------------- 486 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------------- 486 (668)
+..+|...+.+++|..++..+.... .+++......|.-+|...+++++|..+++.+.+ |
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 7777777777777777777765432 122333346677777777888888777776654 1
Q ss_pred -CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHH
Q 005943 487 -DV-VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYY 563 (668)
Q Consensus 487 -~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 563 (668)
|- ..+..++..+...|+..+|++.++++... -+-|......+.+.+...|.+.+|++.++... ...|+ ..+..
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~ 488 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILER 488 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHH
Confidence 11 23445677788999999999999999875 35577788899999999999999999998876 45674 67777
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWAS 596 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 596 (668)
..+..+...|++.+|..+.+++ ...|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 8888999999999999999877 34455444333
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-14 Score=131.95 Aligned_cols=440 Identities=11% Similarity=0.060 Sum_probs=286.5
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHh--ccCChHHH-HHHHHHHHHcCCCCCchHhhH
Q 005943 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS--LSGDLDLG-RLIHERITREKLEYDTVLMNT 145 (668)
Q Consensus 69 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 145 (668)
+.+=|.+++. ..+|...++.-+|+.|...|+. .+...-..|+..-+ ...++--| .+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3355666664 5667888888888888888865 55555555554332 23333222 1233333333322 11222
Q ss_pred HHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhh
Q 005943 146 LLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFN 225 (668)
Q Consensus 146 ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (668)
+.|+..+-+|+..+ .+..||..+|.++|+-...+.|.++++
T Consensus 191 ------K~G~vAdL~~E~~P---------------------------------KT~et~s~mI~Gl~K~~~~ERA~~L~k 231 (625)
T KOG4422|consen 191 ------KSGAVADLLFETLP---------------------------------KTDETVSIMIAGLCKFSSLERARELYK 231 (625)
T ss_pred ------ccccHHHHHHhhcC---------------------------------CCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 33433333333333 478899999999999999999999999
Q ss_pred ccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhH---
Q 005943 226 FMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEE--- 302 (668)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--- 302 (668)
+........ +..+||.+|.+..-.-+ .++..+|.+. ...||..|+|+++.+..+.|+++.
T Consensus 232 E~~~~k~kv-----------~~~aFN~lI~~~S~~~~----K~Lv~EMisq--km~Pnl~TfNalL~c~akfg~F~~ar~ 294 (625)
T KOG4422|consen 232 EHRAAKGKV-----------YREAFNGLIGASSYSVG----KKLVAEMISQ--KMTPNLFTFNALLSCAAKFGKFEDARK 294 (625)
T ss_pred HHHHhhhee-----------eHHhhhhhhhHHHhhcc----HHHHHHHHHh--hcCCchHhHHHHHHHHHHhcchHHHHH
Confidence 988444333 45666666655433222 6677777543 388999999999999999998765
Q ss_pred -HHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHH----HhCCCC----ccchHHHHHHHHHhcCChH
Q 005943 303 -AITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIV----TSGYEL----DYIVGSNLIDLYARLGNVK 373 (668)
Q Consensus 303 -a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~----~~~~~~----~~~~~~~l~~~~~~~~~~~ 373 (668)
|++++.+|++-|+.|...+|..+|..+++.++.- ..+..+..++. -..++| |...+...+..|.+..+.+
T Consensus 295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~-k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ-KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch-hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence 5678899999999999999999999999888762 22333333332 233433 4566778888898999999
Q ss_pred HHHHHHccCCCC-----------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 374 SALELFHRLPKK-----------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 374 ~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.|.++-.-+... ...-|..+....++....+.....|+.|+..-+-|++.+...++++....+.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 998877655432 122356677788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVV---SWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
++|..++..|.........-+...+++.. ..|+.. -+.....-|+ ..-.+.....-.+|.+...
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccC
Confidence 99999999886554444433333333322 122211 1111111111 1111222223345555444
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHH---HHHHHhhhcCChHHHHHHHHhC
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY---CMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.| ...+.+.-.+.+.|..++|.+++..+.+..+--|.....+ .+++.-.+.++...|..+++-|
T Consensus 521 ~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 521 PA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred Ch--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 3445555557788888888888888855544444444444 4455556667777888877766
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=5.3e-13 Score=134.33 Aligned_cols=572 Identities=14% Similarity=0.079 Sum_probs=304.3
Q ss_pred HHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhc---CCCChhHHHHHHHHHhcCCChhh
Q 005943 11 RHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEM---ARKNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 11 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~ 87 (668)
..+..+|++++|.+++.+.++.. +.....|..|...|-..|+.+++...+-.. ...|...|-.+.....+.|++..
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33444589999999999999876 556678888999999999988888866443 23466778888888888999999
Q ss_pred HHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhh----cCChhHHHHhh
Q 005943 88 AIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVK----CGSLTRKLFDQ 163 (668)
Q Consensus 88 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~~~~~~ 163 (668)
|.-.|.+..+.. + ++...+--=...|-+.|+...|...+.++....++.|..-+-.++...++ .++. ++.+..
T Consensus 226 A~~cy~rAI~~~-p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~-e~a~~~ 302 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-P-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER-ERAAKA 302 (895)
T ss_pred HHHHHHHHHhcC-C-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH-HHHHHH
Confidence 999999988876 2 44444445566777889999999999988877654444444444433222 2221 111111
Q ss_pred hhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCC----CCcchHHHHh
Q 005943 164 YSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPE----RDVVSWTGII 239 (668)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l 239 (668)
+. ......+-..+...++.++..+.+...++.|......+.. ++..-|.+--
T Consensus 303 le------------------------~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 303 LE------------------------GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HH------------------------HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 11 1111233345556677777777777777777777666553 3332221000
Q ss_pred h-------hcccC-----chhh-HHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH
Q 005943 240 V-------GCFEC-----SCFT-LSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL 306 (668)
Q Consensus 240 ~-------~~~~~-----~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 306 (668)
. .|..+ +..+ ...+.-...+.+...+++.-|... ....+.-+...|.-+..++...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~--~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE--DNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH--hcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 0 01111 1111 111111111122222222222211 1111111233344444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC
Q 005943 307 LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD 386 (668)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (668)
|..+...-..-+...|-.+.+++-..+.. +.|.+.++...... +.+...--+|...+-+.|+.++|.+++..+..+|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~--e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEY--EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhH--HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 55554443333344444444555555554 45555444444321 1122222334444444555555555555444332
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh---------------
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR--------------- 451 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------- 451 (668)
... ....+..|+..........+...|+.++-..+...|+..
T Consensus 514 ~~~-----------------------~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r 570 (895)
T KOG2076|consen 514 GRN-----------------------AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKR 570 (895)
T ss_pred ccc-----------------------hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 110 001112222222222333333333333322222211110
Q ss_pred -------CCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--------C---CCH-hHHHHHHHHHHhcCChHHHHHHHH
Q 005943 452 -------GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP--------E---RDV-VSWTGIIVGCGQNGRAKEAIAYFQ 512 (668)
Q Consensus 452 -------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~---~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 512 (668)
+.+....+...++.+-.+.++......-...-. . .+- ..+.-++.++++.+++++|+.+..
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~ 650 (895)
T KOG2076|consen 571 RRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVF 650 (895)
T ss_pred HHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 011122222233333333333222222221111 0 111 234567778899999999999998
Q ss_pred HHHHCCC--CCCH-H-H-HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 513 EMIQSRL--KPNE-I-T-FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 513 ~m~~~g~--~p~~-~-~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
.+.+..+ .++. . . =...+.++...+++..|...++.|...++...+ ...|+...+...+.|+-.-=..++..
T Consensus 651 ~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 651 TALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887532 2222 1 2 244566778899999999999999876554433 44566566666666654444444444
Q ss_pred C-CCCCCHHHHHHHHHH--HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 585 M-PFKPDKTIWASMLKA--CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 585 ~-~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+ ..+|+......++.+ ....+.+..|...+-++....|++|.+-..++.++.+.
T Consensus 731 ~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 731 LLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 4 334444333334443 56788999999999999999999998887777776543
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=1.4e-10 Score=112.72 Aligned_cols=445 Identities=9% Similarity=-0.011 Sum_probs=321.6
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHH
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFD 271 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (668)
.++-+...|.+-...--.+|+.+...++++.-. ..++.. +...|-.=...+-..|.+-.++.+..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i-----------~rdqWl~eAe~~e~agsv~TcQAIi~ 503 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEI-----------NRDQWLKEAEACEDAGSVITCQAIIR 503 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceee-----------cHHHHHHHHHHHhhcCChhhHHHHHH
Confidence 345566677766666667777777777775433 222222 34444455555566666666666666
Q ss_pred HhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 005943 272 QYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSG 351 (668)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 351 (668)
.....+.....-..+|+.-...|.+.+.++-|..+|....+- ..-+...|......--..|.. +....++.....+-
T Consensus 504 avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~--Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 504 AVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR--ESLEALLQKAVEQC 580 (913)
T ss_pred HHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH--HHHHHHHHHHHHhC
Confidence 664433222333557777778888888888888888877663 223444555555555555665 66666766666543
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 352 YELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+-....|-.....+-..|+...|..++....+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 233444544556666779999998888877642 556788888888888899999999988765 45666666666
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH-hHHHHHHHHHHhcCChH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV-VSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~ 505 (668)
++.---.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+ |+. ..|-.|...--+.|+.-
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 66666678889999998877765 244456778888888899999999988887665 554 45666666667778899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+|..++++..-.+ +-|...|...|+.-.+.|+.+.|..+..+..+ .++-+...|..-|....+.++-.++...+++.
T Consensus 737 rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 737 RARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 9999999887763 44567888889999999999999998888885 55566778888888888888877888888777
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCceeEE
Q 005943 586 PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWI 664 (668)
Q Consensus 586 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 664 (668)
. -|.....++...+....++++|.+.|+++.+.+|++..+|..+...+.+.|.-++-.+++++.....+ .-|..|.
T Consensus 814 e--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~ 889 (913)
T KOG0495|consen 814 E--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQ 889 (913)
T ss_pred c--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHH
Confidence 5 35556667777888999999999999999999999999999999999999999999999988776544 2244444
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.5e-12 Score=129.62 Aligned_cols=535 Identities=12% Similarity=0.100 Sum_probs=336.9
Q ss_pred HcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHH
Q 005943 49 ADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGR 125 (668)
Q Consensus 49 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 125 (668)
...|+.++|.+++.+..+ .+...|.+|...|-..|+.+++...+-..--.. + -|...|-.+.......|+++.|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-P-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHhcccHHHHH
Confidence 344999999999988865 355679999999999999999887765544443 2 45678888888888899999999
Q ss_pred HHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHH
Q 005943 126 LIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLT 205 (668)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (668)
-++.+.++..+ ++...+-
T Consensus 228 ~cy~rAI~~~p--------------------------------------------------------------~n~~~~~ 245 (895)
T KOG2076|consen 228 YCYSRAIQANP--------------------------------------------------------------SNWELIY 245 (895)
T ss_pred HHHHHHHhcCC--------------------------------------------------------------cchHHHH
Confidence 99998887643 2222333
Q ss_pred HHHHHHHhCCChHHHHHHhhccCCCCcc-hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCe
Q 005943 206 SLIDMYLKCGEIDDGLALFNFMPERDVV-SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNV 284 (668)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 284 (668)
.-+..|-+.|+...|.+-|.++...++. .|... .......+..+...++.+.|.+.++.... .....-+.
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~--------~d~i~~~~~~~~~~~~~e~a~~~le~~~s-~~~~~~~~ 316 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI--------EDLIRRVAHYFITHNERERAAKALEGALS-KEKDEASL 316 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hccccccc
Confidence 3445677788888888888877754441 11111 12223345667777888888888887754 11233345
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHHHHHhccccchH
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF--------------------------TSALKACINLLNFNSR 338 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--------------------------~~ll~~~~~~~~~~~~ 338 (668)
..++.++..+.+...++.+......+......+|..-+ --++-++...... +
T Consensus 317 ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~--e 394 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER--E 394 (895)
T ss_pred cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc--c
Confidence 56888899999999999999988888773333333222 1122334444444 5
Q ss_pred HHHHHHHHHHHhCCCC--ccchHHHHHHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 005943 339 FALQVHGLIVTSGYEL--DYIVGSNLIDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRD 412 (668)
Q Consensus 339 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 412 (668)
....+........+.| +...|.-+.++|...|++.+|.++|..+... +...|-.+.++|...|..+.|.+.|++
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555666666666433 5667778888888888888888888887753 566788888888888888888888888
Q ss_pred HHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 413 MINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV--------KRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 413 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
.+... +.+...-..+-..+.+.|+.++|.+.+..+. ..+..|.........+.+.+.|+.++=..+-..|.
T Consensus 475 vl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 475 VLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 87642 2222333445556677888888888887743 23345555555556667777777766443333332
Q ss_pred C---------C-----------------CHhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCCCHH--HHHHHH
Q 005943 485 E---------R-----------------DVVSWTGIIVGCGQNGRAKEAIAYFQ------EMIQSRLKPNEI--TFLGVL 530 (668)
Q Consensus 485 ~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~------~m~~~g~~p~~~--~~~~ll 530 (668)
. | .......++.+-.+.++......-.. --...|+.-+.+ .+.-++
T Consensus 554 ~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i 633 (895)
T KOG2076|consen 554 DDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELI 633 (895)
T ss_pred HHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHH
Confidence 1 0 11112223333333333222111111 111123333332 345566
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChh----HHHHHHHHhhhcCChHHHHHHHHhCC------CCCC-HHHHHHHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLE----HYYCMVDLLGQAGCFDDAEQLIAEMP------FKPD-KTIWASMLK 599 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~ 599 (668)
.++++.+.+++|..+...+....-+.-+.. .-...+.+....+++..|.+.++.+- ..|. ...|+...+
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s 713 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS 713 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 677888888888888877764423333322 33445566667788888888888771 1232 334555666
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPED-PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
...+.++-.--.+.+.++....|++ +......+..+...+.+.-|..++-++-...+..|
T Consensus 714 ~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 714 YFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 6667766666666666666666665 54555566667778888888888877776666333
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=5.6e-13 Score=133.41 Aligned_cols=536 Identities=12% Similarity=0.029 Sum_probs=299.8
Q ss_pred hhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCC----ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 005943 24 SLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARK----NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYG 99 (668)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 99 (668)
.++..+...|+.|+..+|.+++..||..|+.+.|- +|.-|.-. +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56778888899999999999999999999999988 88888643 4456888888888888877664
Q ss_pred CCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchh
Q 005943 100 SVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVAL 177 (668)
Q Consensus 100 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~ 177 (668)
. |...||+.|+.+|...||+..-..+-+.|..- ...+...|-.. +.++..+.-
T Consensus 80 -e-p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i------------~~sfs~~Gvgs~e~~fl~k~~c----------- 134 (1088)
T KOG4318|consen 80 -E-PLADTYTNLLKAYRIHGDLILFEVVEQDLESI------------NQSFSDHGVGSPERWFLMKIHC----------- 134 (1088)
T ss_pred -C-CchhHHHHHHHHHHhccchHHHHHHHHHHHHH------------HhhhhhhccCcHHHHHHhhccc-----------
Confidence 3 88889999999999999887633332223221 11122222211 111111000
Q ss_pred hhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcc-hHHHHhhhcccCchhhHHHHHHH
Q 005943 178 WNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVV-SWTGIIVGCFECSCFTLSALVDM 256 (668)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~l~~~ 256 (668)
..+.-||. ...+....-.|-++.+++++..+...... +. .. .++-
T Consensus 135 ----------------~p~~lpda---~n~illlv~eglwaqllkll~~~Pvsa~~~p~-------------~v--fLrq 180 (1088)
T KOG4318|consen 135 ----------------CPHSLPDA---ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPF-------------QV--FLRQ 180 (1088)
T ss_pred ----------------CcccchhH---HHHHHHHHHHHHHHHHHHHHhhCCcccccchH-------------HH--HHHH
Confidence 11223443 34555566778888888888777621110 10 00 1111
Q ss_pred HHc-CCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 257 YSN-CNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 257 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
... ...+++-....... . ..|+..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.++-+ .++.
T Consensus 181 nv~~ntpvekLl~~cksl----~-e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~ 252 (1088)
T KOG4318|consen 181 NVVDNTPVEKLLNMCKSL----V-EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAA 252 (1088)
T ss_pred hccCCchHHHHHHHHHHh----h-cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccc
Confidence 111 12223222222222 1 2578899999999999999999999999999999999998888777766 5666
Q ss_pred chHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCc-----HHHHHHH
Q 005943 336 NSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLN-----SLAYLLF 410 (668)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~ 410 (668)
.....+..-|...|+.|++.|+...+..+.+.|....+....+.-.--....+..+.++.....+. .-....+
T Consensus 253 --q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~ 330 (1088)
T KOG4318|consen 253 --QVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGST 330 (1088)
T ss_pred --hHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHh
Confidence 788889999999999999999988887777755532222111100000112222332221111111 1122222
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005943 411 RDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF---EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD 487 (668)
Q Consensus 411 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 487 (668)
++..-.|+......|...+.. ...|.-+.+.++-..+..-.. ..++..|..++. +.|.+...+.
T Consensus 331 k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFrr~e~~~ 397 (1088)
T KOG4318|consen 331 KKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFRRIERHI 397 (1088)
T ss_pred hHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHHHHHhhH
Confidence 333333444333333332222 224555555555444432111 111222322222 2233222221
Q ss_pred HhHHHHHHHHHHh---cCChHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHHHhhcCCCHHH
Q 005943 488 VVSWTGIIVGCGQ---NGRAKEAIAYFQEM------------IQ----SRLKP-------NEITFLGVLSACRHAGLVEE 541 (668)
Q Consensus 488 ~~~~~~l~~~~~~---~~~~~~a~~~~~~m------------~~----~g~~p-------~~~~~~~ll~~~~~~g~~~~ 541 (668)
.....-.-.+... .....+..+..... .. +-..| -...-+.++..|+..-+..+
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110001111111 11111111111111 00 00111 01123344445555555555
Q ss_pred HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP-----FKPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
++..-+..... -+ ...|..|++.+....+.+.|..+.++.. ..-|...+..+...+.+.+....+..+.++
T Consensus 478 ~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 478 ILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 55444443321 11 1678888888888888888888888773 224555677777778888888888888888
Q ss_pred HHh---cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 617 LLA---TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 617 ~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+ ..|....++..+.......|+.+.-.+..+-+...|+
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 777 2344455666777777788888888888888888888
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=3.3e-12 Score=128.03 Aligned_cols=280 Identities=10% Similarity=0.014 Sum_probs=165.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCCCh------hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-C-cHHHHHHH
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKKDV------VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD-V-NQFIISSV 428 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~l 428 (668)
..|..||..+......+.|..+.+++..++. .-+..+.+...+.+....+..++.++.+.-.. | ...++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5677888888888888888888888876643 34677778888888888888888888764322 2 24556667
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh--cCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQ--NGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~--~~~ 503 (668)
++.....|+.+...++++.+...|+..+ ..++....+.++...|.+.++.... +.+.....+.+.+.+ ..+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~ 647 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDS 647 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhcccc
Confidence 7777778888888888888887776542 3344445566677667666554331 222222212111111 011
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc--ccC---------CCC---------ChhHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP--EYG---------LEP---------HLEHYY 563 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~---------~~p---------~~~~~~ 563 (668)
.+.+..+- .=+..|.+.|++..|.++.+.--- +.+ +.| +.....
T Consensus 648 ~qk~mDls----------------~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~d 711 (1088)
T KOG4318|consen 648 PQKTMDLS----------------IPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKND 711 (1088)
T ss_pred HHHHHhhc----------------chhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHH
Confidence 11111111 011113444444444333221100 000 000 011122
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCC---CCchhHHHHHHHHHh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHN---NTKLVSIIAEQLLATSP---EDPSKYVMLSNVYAT 637 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~ 637 (668)
-|+..|.+.|+++.|..++.++++.|+..+...+...+.+.. ++.++...-+++.+..| .+...|...+.+..+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 367788888999999999999887888888777777776554 44445555555555443 344445555556666
Q ss_pred cCChhhHHHHHHHHHhcCC
Q 005943 638 LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~~ 656 (668)
....+.|.+.+.+..+...
T Consensus 792 ~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 6666688888888877754
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=2.7e-10 Score=110.75 Aligned_cols=392 Identities=10% Similarity=0.094 Sum_probs=302.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH----HHhCCCCCCHHHHHHHHHHH
Q 005943 254 VDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH----IHSSGMCIDSYTFTSALKAC 329 (668)
Q Consensus 254 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~ 329 (668)
--++.+..-++.|.++++...+. ++.+...|-+-..---.+|+.+...+++.+ +...|+..+...|..=..+|
T Consensus 413 wlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 33456667788888888887652 444666776666666678888888877665 45678888888888888888
Q ss_pred HhccccchHHHHHHHHHHHHhCCCC--ccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcH
Q 005943 330 INLLNFNSRFALQVHGLIVTSGYEL--DYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNS 404 (668)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 404 (668)
-..|.. -.+..+......-|+.- -..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+
T Consensus 490 e~agsv--~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSV--ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCCh--hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 888888 77888888888777754 345777777888888999999888887765 25567777777767778888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 405 LAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 405 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
....+|++.... ++-....|-......-..|++..|..++....+.. +.+...+-+-+..-....+++.|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 888899888765 33445555555666677799999999999888775 4477788888888888999999999998776
Q ss_pred C--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH
Q 005943 485 E--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH 561 (668)
Q Consensus 485 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 561 (668)
. ++...|.--+......+..++|++++++.++. -|+-. .|..+...+-+.++.+.|.+.|..=.+ .++-....
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipL 721 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPL 721 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchH
Confidence 4 66677766666666778899999999888884 56654 677788888889999999988877663 33335677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------------
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE---------------- 623 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---------------- 623 (668)
|..|.+.=.+.|+.-+|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++..|.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 8888888888899999999999883 3347778888999999999999999888888776554
Q ss_pred --------------CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 624 --------------DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 624 --------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|+..+..++..+....++++|++.|.+..+.+.
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 466677788888888999999999988877665
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=9.1e-16 Score=146.14 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=113.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGE 472 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (668)
...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 344455566666666664443333223333332 23334445566666666666666554 2255566777776 68899
Q ss_pred hHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 473 IDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 473 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+++|..++...-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988877643 566677788888999999999999999987642 3456677888888999999999999999999
Q ss_pred ccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 550 KPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 550 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.+ ..|+ ......++..+...|+.+++.++++... .+.|...+..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 3674 7888899999999999999888887762 2345667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+...++.++...|+.++|.++.+++-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987764
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=2.2e-12 Score=119.47 Aligned_cols=433 Identities=12% Similarity=0.098 Sum_probs=284.0
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
...|...|..+....+|+..|+-+.+....+....++ -.+.+.+.+...+.+|+++++-....-.++..+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk----------mnigni~~kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK----------MNIGNIHFKKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee----------eeecceeeehhhHHHHHHHHHHHHhhccccchh
Confidence 3445566667777888888888777554444222221 134556788888899999888765521111111
Q ss_pred --eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch---
Q 005943 284 --VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV--- 358 (668)
Q Consensus 284 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 358 (668)
+...+.+--.+.+.|+++.|+..|+...+. .|+-.+-..++-++...|+. +...+.|..|..-...||..-
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~--ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDA--EKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcH--HHHHHHHHHHhcCCCCCCcccccC
Confidence 123444445678899999999999888774 47877766666666667777 888888888876543333221
Q ss_pred -----HHHHHHHHHhcCC-----------hHHH----HHHHccCCCCChh-------------hHHH--------HHHHH
Q 005943 359 -----GSNLIDLYARLGN-----------VKSA----LELFHRLPKKDVV-------------AWSG--------LIMGC 397 (668)
Q Consensus 359 -----~~~l~~~~~~~~~-----------~~~a----~~~~~~~~~~~~~-------------~~~~--------l~~~~ 397 (668)
-..|+.--.+... .+.+ .++..-+..++-. .+.. -...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 1122222222111 1111 1222222223211 0111 12347
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH--HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSV--LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
.+.|+++.|+++++-+.....+.-+..-+.+ +.-+....++..|.++-+...... .-++...+.-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 7899999999999988766544333322222 222223345666666666544322 1122222222233345789999
Q ss_pred HHHHhccCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPERDVVSWTGII---VGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|.+.|.+....|...-.+|. -.+-..|+.++|++.|-++... +.-+......+...|....+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 99999999887765433333 3466789999999999887664 344566777888889999999999999988762
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
-++.|+.+..-|.+.|-+.|+...|.+..-+- . ++.+..+..-|...|....-+++++.+|+++.-+.|.....-..
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 34447899999999999999999999876554 4 44577787778888888888999999999999999997777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
++..+.+.|+|.+|..+++.+..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh
Confidence 888888999999999999988764
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.2e-11 Score=116.00 Aligned_cols=212 Identities=14% Similarity=0.110 Sum_probs=172.5
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
.|+.-.+.+-|+..+.....+ ...|--+..+|....+.++....|+...+ .|+.+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 477888888888888775332 23366677789999999999999998764 35667777777778888999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 005943 512 QEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP 589 (668)
Q Consensus 512 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 589 (668)
++.++ +.|+ ...|..+.-+..+.+.++++...|++..+ .++--+++|+.....+...+++++|.+.++.. ..+|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 4564 45788888888899999999999999986 55556899999999999999999999999977 3444
Q ss_pred C---------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 590 D---------KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 590 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+ +.+-.+++..- -.+++..|..+++++.+++|....+|..++.+..+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 22223333333 34899999999999999999999999999999999999999999999864
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.5e-12 Score=127.07 Aligned_cols=277 Identities=16% Similarity=0.068 Sum_probs=211.8
Q ss_pred ChHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCCcHHHHHHHHHHHHcC--CCCcHHHHHHHHHHhccccchHhHHHHH
Q 005943 371 NVKSALELFHRLPKK--DV-VAWSGLIMGCTKHGLNSLAYLLFRDMINSN--QDVNQFIISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 371 ~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
+..+|...|..+++. |. .....+..+|...+++++|.++|+.+.+.. .--+...|.+.+-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 456777777775442 22 344556677778888888888888776643 122344566655543221 111122
Q ss_pred -HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 446 -AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 446 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+ | ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 222222 256788999999999999999999999999886 3 456888888888999999999999998775 445
Q ss_pred CH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005943 522 NE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASM 597 (668)
Q Consensus 522 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 597 (668)
.. ..|..+...|.+.++++.|+-.|++.. .+.| +......+...+.+.|+.++|+.+++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 43 367777888999999999999999998 6677 4667778889999999999999999998 3333 55555556
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+..+...+++++|.+.++++++..|++..++..++++|.+.|+.+.|..-+..+.+..++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 666778899999999999999999999999999999999999999999999888876653
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=8.9e-12 Score=124.27 Aligned_cols=275 Identities=10% Similarity=0.098 Sum_probs=195.5
Q ss_pred cCChHHHHHHHccCCCC--Chhh-HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH--HHHHHhccccchHhHHH
Q 005943 369 LGNVKSALELFHRLPKK--DVVA-WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS--SVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 443 (668)
.|+++.|++.+....+. ++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888887765543 2222 333344457788888888888888754 34433222 33556777888888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CH--------hHHHHHHHHHHhcCChHHHHHHHH
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DV--------VSWTGIIVGCGQNGRAKEAIAYFQ 512 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 512 (668)
.++.+.+.. +-++..+..+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 556777888888888999999999888877642 11 133334444444555666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C
Q 005943 513 EMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-D 590 (668)
Q Consensus 513 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 590 (668)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..|+..... +.+....++.+++++.++++ +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667788888889999999999999988874 355553332 22333458889999988877 3445 4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
...+.++...|.+.+++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567778888999999999999999999998885 4577899999999999999999887644
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=4.2e-09 Score=98.82 Aligned_cols=464 Identities=13% Similarity=0.077 Sum_probs=288.8
Q ss_pred ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHH
Q 005943 68 NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLL 147 (668)
Q Consensus 68 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 147 (668)
++..|-...+-=..++++..|..+|++.+.-. . -+...|.--+..=.+...+.-|..+++.....-+..|..=|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy---- 145 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-Y-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY---- 145 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-c-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH----
Confidence 44455555555567888999999999998765 2 46666776777777888899999999988764332222111
Q ss_pred hhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 148 DMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
..+..=-..|++..|.++|+.-
T Consensus 146 ----------------------------------------------------------KY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 146 ----------------------------------------------------------KYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred ----------------------------------------------------------HHHHHHHHhcccHHHHHHHHHH
Confidence 1111222345555555555543
Q ss_pred CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 005943 228 PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL 307 (668)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 307 (668)
.+-.+ +..+|.+.|++-.+...++.|..++++..- ..|++.+|--...--.++|++..+..+|
T Consensus 168 ~~w~P-------------~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 168 MEWEP-------------DEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HcCCC-------------cHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 32111 334444555555555555555555555533 4455555554444445555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH----hccccchHHHHHHHHHHHHhCCCC-ccchHHHHHHHHHhcCChHHHHHHHc--
Q 005943 308 SHIHSSGMCIDSYTFTSALKACI----NLLNFNSRFALQVHGLIVTSGYEL-DYIVGSNLIDLYARLGNVKSALELFH-- 380 (668)
Q Consensus 308 ~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-- 380 (668)
+...+. --|...-..++.+++ ....+ +.+..+++...++-.+- ....|..+...=-+-|+....++..-
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~--ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEY--ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 554432 011111112222222 22233 55555555554432111 12334444433334455444443321
Q ss_pred ------cCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH-H------HHHHHHHHh---ccccchHhH
Q 005943 381 ------RLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ-F------IISSVLKVC---SCLASLRRG 441 (668)
Q Consensus 381 ------~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~------~~~~ll~~~---~~~~~~~~a 441 (668)
...+. |-.+|-..++.-...|+.+...++|+..+.. ++|-. . .|.-+=-+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11222 4456767777777789999999999988754 44422 1 222211122 346789999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHH----HhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMY----LKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
.++++...+. +|....|+.-+--+| .++.+...|.+++..... |...+|...|..-.+.++++.+..++++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988883 466666666554444 467899999999988775 788888888888899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIW 594 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 594 (668)
+-+ +-|..+|......-...|+.+.|..+|+-...+..++.....|.+.|+.=...|.+++|..+++.+ ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 964 445667888877778899999999999999876444444667888888888999999999999988 344556667
Q ss_pred HHHHHHHH-----hhC-----------CHHHHHHHHHHHHh
Q 005943 595 ASMLKACE-----THN-----------NTKLVSIIAEQLLA 619 (668)
Q Consensus 595 ~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~ 619 (668)
-+...--. +.+ ....|..+|+++..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 66655432 333 66788999999877
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=9.7e-10 Score=102.95 Aligned_cols=426 Identities=9% Similarity=0.034 Sum_probs=309.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
+...|-.-+..=.++.++..|..+++.....=+. -...|.-.+.+--..|++..|.++|++-..
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~---- 169 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------------VDQLWYKYIYMEEMLGNIAGARQIFERWME---- 169 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHc----
Confidence 4445555666667788888888888877632222 134556666667778999999999999866
Q ss_pred CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-CC-CCccc
Q 005943 280 AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTS-GY-ELDYI 357 (668)
Q Consensus 280 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 357 (668)
..|+...|++.|+.-.+.+.++.|..+|+..+- +.|+..+|.-..+.=-+.|.. ..+..++....+. |- ..+..
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~--~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV--ALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHhhhHHHHHH
Confidence 889999999999999999999999999999876 559999999888888888988 8899998877653 21 12334
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCC----C-ChhhHHHHHHHHHhcCCcHHHHHH--------HHHHHHcCCCCcHHH
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPK----K-DVVAWSGLIMGCTKHGLNSLAYLL--------FRDMINSNQDVNQFI 424 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~ 424 (668)
.+.++...=.++..++.|.-+|+-..+ . ....|..+...--+.|+.....+. |++++.. .+.|-.+
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDs 324 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDS 324 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchH
Confidence 455555555567778888888765443 2 234455555555556766554443 3334433 3556677
Q ss_pred HHHHHHHhccccchHhHHHHHHHHHHhCCCCch-h------HHHHHHHHH---HhcCChHHHHHHhccCCC--C-CHhHH
Q 005943 425 ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED-I------TLTSLIDMY---LKCGEIDDGLALFKFMPE--R-DVVSW 491 (668)
Q Consensus 425 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~------~~~~l~~~~---~~~~~~~~A~~~~~~~~~--~-~~~~~ 491 (668)
|--.++.-...|+.+...++++..+..- +|-. . .|--+=-++ ....+.+.+.++|+...+ | ...||
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 7778888888899999999999888663 4421 1 121111111 246788899999987765 3 23344
Q ss_pred H----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHH
Q 005943 492 T----GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMV 566 (668)
Q Consensus 492 ~----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 566 (668)
. ....--.++.+...|.+++...+ |.-|...+|...|..-.+.++++.+..++++.. ...| +..+|.-..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl---e~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL---EFSPENCYAWSKYA 478 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---hcChHhhHHHHHHH
Confidence 3 33444457788999999988765 578999999999999999999999999999998 5566 688899999
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH-----h
Q 005943 567 DLLGQAGCFDDAEQLIAEMPFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA-----T 637 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~ 637 (668)
..=...|+.+.|..+|.-+-..|. ...|.+.|.--...|.++.|..+|+++++..+... +|...+..-. +
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccc
Confidence 999999999999999998754553 34566677767788999999999999999887755 7777776554 3
Q ss_pred cC-----------ChhhHHHHHHHHHh
Q 005943 638 LG-----------MWDSLSKVRKAGKK 653 (668)
Q Consensus 638 ~g-----------~~~~a~~~~~~~~~ 653 (668)
.| ....|++++++...
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHH
Confidence 34 55677777776643
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-10 Score=108.52 Aligned_cols=346 Identities=13% Similarity=0.111 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH--
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS-- 324 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-- 324 (668)
...+......+.+.|....|+..|..... .-+..|.+.+.-..-.-+.+.+. ... .|...|...+..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~------~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVN------RYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHh------cCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHH
Confidence 33444444556677888888888887732 22334444433222222222211 111 122222222211
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHH
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCT 398 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~ 398 (668)
+..++...... +.+..-.......|++.+...-+-...+.-...++++|+.+|+++.+. |..+|+.++- .
T Consensus 233 ~~~a~~el~q~--~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 233 LKKAYQELHQH--EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 22333344444 555555666666666666665555555555666777777777777654 3334444332 2
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 399 KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 399 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
+..+.. +..+..-...- -+-.+.|..++.+.|.-.++.++|..
T Consensus 309 ~~~~sk--Ls~LA~~v~~i-----------------------------------dKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 309 KNDKSK--LSYLAQNVSNI-----------------------------------DKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhHH--HHHHHHHHHHh-----------------------------------ccCCccceeeehhHHHHHHhHHHHHH
Confidence 221111 11111110000 12223344444455555555555555
Q ss_pred HhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 479 LFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 479 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
.|++..+ | -...|+.+..-|...++...|++-++..++-. +-|...|-.+..+|.-.+...=|+-+|++.. .+
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~ 427 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---EL 427 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hc
Confidence 5555443 2 22345555555555555555555555555521 2233355555555555555555555555554 33
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-------cCCCCc
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLA-------TSPEDP 625 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~ 625 (668)
+| |...|.+|.++|.+.++.++|.+-|...- ...+...+..+...+.+-++.++|...|++-++ ..|...
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 44 35555555555555555555555555441 112334455555555555555555555555444 122223
Q ss_pred hhHHHHHHHHHhcCChhhHHHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
.+...|+..+.+.+++++|-.+.
T Consensus 508 ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHH
Confidence 33334444455555555554443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.1e-11 Score=121.10 Aligned_cols=278 Identities=14% Similarity=0.111 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHH
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNSLAYLLFR 411 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 411 (668)
+.|...|..+..+ +.-+..+..-+..+|...+++++|+++|+.+.+. +...|.+.+-.+.+. -++..+.
T Consensus 336 ~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 5666666663332 2333355566777777778888888888777642 555666666554332 2222222
Q ss_pred HHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHH
Q 005943 412 DMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSW 491 (668)
Q Consensus 412 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 491 (668)
+-.-.--+-.+.+|.++-+.|.-.++.+.|...|++..+.. +-...+|+.+.+-+.....+|.|...|+.....|+..|
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 22222235567788888888888888888888888776654 33678899999999999999999999999988776665
Q ss_pred HH---HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHH
Q 005943 492 TG---IIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMV 566 (668)
Q Consensus 492 ~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 566 (668)
|+ +...|.+.++++.|+-.|++..+ +.|. .+....+...+.+.|+.++|+.++++.. .++| |+..--..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRA 564 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHH
Confidence 54 67789999999999999999998 5564 4566777778889999999999999988 5566 566666677
Q ss_pred HHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 567 DLLGQAGCFDDAEQLIAEMP-FKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
..+...+++++|+..+++++ ..|+ ...+..+...|.+.|+.+.|+.-|--+.+++|.-..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88889999999999999993 4564 556777788899999999999999999999987543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=6.6e-11 Score=118.07 Aligned_cols=223 Identities=10% Similarity=0.023 Sum_probs=151.0
Q ss_pred HHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHh
Q 005943 364 DLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 440 (668)
..+...|+++.|...++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l------------ 227 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML------------ 227 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH------------
Confidence 3445555566665555554432 3444555555566666666666666655554422111 00000
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
....|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+.
T Consensus 228 ---------------~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 228 ---------------EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred ---------------HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 001233333333444556667777777654 46778888899999999999999999988873
Q ss_pred CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005943 518 RLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWA 595 (668)
Q Consensus 518 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 595 (668)
+|+.... ++.+....++.+++.+..+...++ .| |...+.++...+.+.|++++|.+.|+.+ ...|+...+.
T Consensus 293 --~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 293 --QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred --CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 5555322 233444668999999999998853 45 5677889999999999999999999988 6679999989
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.+...+.+.|+.++|.+++++...+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999987743
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.1e-10 Score=106.40 Aligned_cols=252 Identities=11% Similarity=0.034 Sum_probs=141.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 396 GCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 396 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
-+...+++.+..++++++.+.. ++....+..=|..+...|+..+-..+-..+++. .|..+.+|-++.-.|...|+..+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3334444444444444444321 222222222222333444444333333333333 24455666666666666677777
Q ss_pred HHHHhccCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPERD---VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+..+..-|.+.++.+.|.++|.+..
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-- 407 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-- 407 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 777776554322 335666666666667777777666665553 11122233444445666677777777776666
Q ss_pred cCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 553 YGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--------FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 553 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
++-| |+..++-+.-+....+.+.+|..+|+... .++ -..+++.+.-+|.+.+.+++|+..+++++.+.|
T Consensus 408 -ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 -AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred -hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 4445 45566666666666666677766666541 111 233456666667777777777777777777777
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.++.++..++.+|...|+++.|+..+.+..-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 7777777777777777777777777766543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-09 Score=101.36 Aligned_cols=252 Identities=11% Similarity=0.092 Sum_probs=201.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF--EKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 471 (668)
..++......+++.+-.......|++-+...-+....+.....++++|+.+|+++.+... --|..+|+-++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 345666667788888888888888877777777777777788899999999999988731 12456666554 33333
Q ss_pred ChHH---HHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 005943 472 EIDD---GLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 472 ~~~~---A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
+.+- |..++. +.+=.+.|..++.+-|.-.++.++|...|++.++ +.|... .|..+.+-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221 222221 2223455667778888888999999999999998 466654 68888889999999999999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.. .+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|+++....--+
T Consensus 389 rAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 998 5566 7889999999999999999999999998 4555 78899999999999999999999999999977777
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++..|+++|-+.++.++|.+.+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999988765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1.6e-10 Score=116.06 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=169.5
Q ss_pred hcCChHHHHHHHccCCCC--C-hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 368 RLGNVKSALELFHRLPKK--D-VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
..|+++.|++.+.+..+. + ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 457777777777665542 2 2223333455666777777777777766543222222333345566667777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHHHHHC
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTG----IIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
++.+.+.. |-++..+..+...+...|++++|.+.+..+.+ .+...+.. ........+..+.+.+.+..+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777665 44556677777777777787777777776663 22222211 111112222222233344444432
Q ss_pred C---CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH-HHHHHH--hhhcCChHHHHHHHHhC-CCCCC
Q 005943 518 R---LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-YCMVDL--LGQAGCFDDAEQLIAEM-PFKPD 590 (668)
Q Consensus 518 g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~-~~~p~ 590 (668)
. .+.+...+..+...+...|+.++|.+++++..+. .||.... ..++.. ....++.+++.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 1 1125667777777888888888888888888743 4443310 012222 22346677777777766 33443
Q ss_pred H---HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 591 K---TIWASMLKACETHNNTKLVSIIAE--QLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 591 ~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
. ....++...+.+.|++++|.+.|+ ...+..|++. .+..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455677788888888888888888 4555666654 466888888888888888888887644
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.6e-09 Score=99.02 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=172.8
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL 477 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 477 (668)
.-.|+.-.|...|+..+.....++.. |.-+..+|....+.++....|....+.. +.++.+|..-.+.+.-.++++.|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 44688888999999988876555443 6666778888999999999999888876 567778888888888889999999
Q ss_pred HHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 478 ALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 478 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
.=|++... | ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+... .
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~ 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---E 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---h
Confidence 99998875 3 5567777777778889999999999999986 45556789999999999999999999999887 3
Q ss_pred CCCC---------hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 555 LEPH---------LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 555 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+.|+ +.+-..++-.-.+ +++..|.+++.+. ...| ....|..|.....+.|+.++|+++|++...+-..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4444 1222233322233 8899999999988 4555 4557888999999999999999999998875543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=5.1e-13 Score=127.32 Aligned_cols=230 Identities=14% Similarity=0.178 Sum_probs=106.9
Q ss_pred HHHHHhccccchHhHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcC
Q 005943 427 SVLKVCSCLASLRRGKQVHAFCVKRG-FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNG 502 (668)
Q Consensus 427 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 502 (668)
.+...+.+.|++++|.++++...... .+.+...+..+.......++++.|...++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667788999999999996654443 3445666667777888899999999999999863 34456667666 7889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
++++|..++++..+. .++...+..++..+...++++++..+++.+......+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356667778888899999999999999998754344567888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 583 AEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 583 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
++. ...| |......++..+...|+.+++.++++...+..|.++..+..++.+|...|+.++|..++++..+..+.+|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 988 4456 5777888999999999999999999999998899999999999999999999999999999988777554
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=9.3e-10 Score=110.54 Aligned_cols=251 Identities=9% Similarity=-0.024 Sum_probs=169.5
Q ss_pred HHHHHhcCChHHHHHHHccCCC--CCh--hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 363 IDLYARLGNVKSALELFHRLPK--KDV--VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
..++.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...++.+.+.. +-++.....+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 3445555666666666666432 221 222233556666777777777777776664 23445566666777777777
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHH-------HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMY-------LKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
+.+.+++..+.+.+..++......-..++ ......+...+.+....+ .+...+..+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 77777777777765433322211111111 122233455556665553 37788888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHH--H-HHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-h--hHHHHHHHHhhhcCChHHHHHHH
Q 005943 509 AYFQEMIQSRLKPNEIT--F-LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-L--EHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+++++..+. .|+... + ....-.....++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999985 455442 1 12222234457888899999888754 453 4 56779999999999999999999
Q ss_pred Hh--C-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 583 AE--M-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 583 ~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 94 3 5679999999999999999999999999999866
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=2.4e-08 Score=97.44 Aligned_cols=542 Identities=13% Similarity=0.142 Sum_probs=283.1
Q ss_pred cchHHHHHHHHcCCChhHHHHhhhhcCC-----CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHH
Q 005943 39 FTGNNLLSMYADFTSLNDAHKLFDEMAR-----KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLK 113 (668)
Q Consensus 39 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 113 (668)
..|-.-+..+.++|++-.-...|+...+ .....|...+...-..+-++.++++|++..+.. |. .-.--+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~--~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HH--HHHHHHH
Confidence 3455555666667777777777766533 123357777777777788888888888887754 33 3666777
Q ss_pred HHhccCChHHHHHHHHHHHHcCC------CCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchh
Q 005943 114 ACSLSGDLDLGRLIHERITREKL------EYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQ 187 (668)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (668)
.+++.+++++|.+.+........ +.+...|..+.+..++..+.. . ..+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~--------------~------------sln 231 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV--------------Q------------SLN 231 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh--------------c------------ccC
Confidence 77888888888888877764321 112222222222222211110 0 000
Q ss_pred hHHHHHHhCCC--CCh--hhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH
Q 005943 188 VHAFCVKRGFE--KED--VTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL 263 (668)
Q Consensus 188 ~~~~~~~~g~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 263 (668)
+ +.....|+. +|. ..|..|.+.|.+.|.++.|..+|++....-. ...-|+.+.+.|+.-..-
T Consensus 232 v-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-------------tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 232 V-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-------------TVRDFTQIFDAYAQFEES 297 (835)
T ss_pred H-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-------------ehhhHHHHHHHHHHHHHH
Confidence 0 011112221 222 3466666666777777777666665443211 222333344444332211
Q ss_pred HHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCC-C----------CCHHHHHHHHHHHHhc
Q 005943 264 CEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGM-C----------IDSYTFTSALKACINL 332 (668)
Q Consensus 264 ~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~----------p~~~t~~~ll~~~~~~ 332 (668)
.-+.++= +.. +.+..+. ..-+++-.+.-|+.+.+.+. - -+..++..-... ..
T Consensus 298 ~~~~~me--~a~-~~~~n~e------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e 360 (835)
T KOG2047|consen 298 CVAAKME--LAD-EESGNEE------------DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YE 360 (835)
T ss_pred HHHHHHh--hhh-hcccChh------------hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hc
Confidence 1111110 000 0000000 01123333444555444321 0 111122111111 12
Q ss_pred cccchHHHHHHHHHHHHhCCCCc------cchHHHHHHHHHhcCChHHHHHHHccCCCCChh-------hHHHHHHHHHh
Q 005943 333 LNFNSRFALQVHGLIVTSGYELD------YIVGSNLIDLYARLGNVKSALELFHRLPKKDVV-------AWSGLIMGCTK 399 (668)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~ 399 (668)
|+. ......+.+..+. +.|. -..|..+.+.|-..|+++.|..+|++..+-+-. +|..-...-.+
T Consensus 361 ~~~--~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 361 GNA--AEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred CCh--HHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 222 3344445444442 2221 235667788888899999999999988764333 34444455556
Q ss_pred cCCcHHHHHHHHHHHHcCCCCc-----------------HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVN-----------------QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS 462 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 462 (668)
..+++.|+.+.+......-.|. ...|...+..-...|-++....+++.+.+..+.....+.|
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N- 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN- 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-
Confidence 6777788877766543221111 1133444444445567777777777777776543332222
Q ss_pred HHHHHHhcCChHHHHHHhccCCC----CCHh-HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE----RDVV-SWTGIIVGCGQ---NGRAKEAIAYFQEMIQSRLKPNEITFLGVL--SA 532 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~ 532 (668)
..-.+-...-++++.++|++-.. |++. .|+..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+ ..
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 12223344557888888887653 5543 56665554443 2367888888888888 5666544322222 22
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH---HHHhhCC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLK---ACETHNN 606 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~---~~~~~~~ 606 (668)
-.+.|....|..++++... ++++. ...|+..|.-....=-...-.+++++. ..-||...-...+. .-.+.|.
T Consensus 596 EEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence 2356778888888888764 55553 456666664332221122233444443 22355544433333 2456788
Q ss_pred HHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 607 TKLVSIIAEQLLATSPE--DPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.+.|..+|...-+..++ +...|...=..-.+.|+-+-..+.++
T Consensus 674 idRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 88888888888885544 45567777777888888555544443
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.1e-10 Score=108.81 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=165.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788889999999999999987654 3 46678888899999999999999999998863 3455677788888
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...|++++|.+.+++.............+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999854222234567778899999999999999999887 3333 466788888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888999999999999999999998887654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=2.6e-09 Score=98.47 Aligned_cols=286 Identities=11% Similarity=0.017 Sum_probs=182.9
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHH
Q 005943 297 NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 297 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
.|++.+|+++..+-.+.+-.|- ..|....++.-..|+. +.+-..+.+..+..-.++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~--~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDE--DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccH--HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 5677777777776555543331 2233334444444444 444444444443322333333444444455555555555
Q ss_pred HHHccCC---CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC
Q 005943 377 ELFHRLP---KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF 453 (668)
Q Consensus 377 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 453 (668)
.-+.++. ..+........++|.+.|++.....++.+|.+.|.-.++..-
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~---------------------------- 225 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA---------------------------- 225 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------
Confidence 4444332 234445555555666666666666666666555533222110
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVL 530 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 530 (668)
.....+++.+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++.++..+++..|+.. ..
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 01123455556555555555555666776663 456667778888899999999999999999887777722 22
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~ 609 (668)
-.+.+-++...-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|++.+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 346677888887777777776544444 78889999999999999999999876 678999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005943 610 VSIIAEQLLA 619 (668)
Q Consensus 610 a~~~~~~~~~ 619 (668)
|.+..++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=8.9e-10 Score=98.26 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=120.9
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCC-c--cchHHHHHHHHHhcCCh
Q 005943 296 LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYEL-D--YIVGSNLIDLYARLGNV 372 (668)
Q Consensus 296 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~ 372 (668)
-.++.++|.+.|-+|.+.. +-+..+-.++-+.+.+.|.. +.|..++..+.++.--+ + ....-.|..-|...|-+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEv--DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEV--DRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchH--HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3566778888888887621 11122223455566667777 77777777766543211 1 12333466778888999
Q ss_pred HHHHHHHccCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH----HHHHHHHHhccccchHhHHHHH
Q 005943 373 KSALELFHRLPKKD---VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQF----IISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 373 ~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
|.|+.+|..+.+.+ ......|+..|....+|++|+++-+++...+..+... .|.-+...+....+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999998887743 3456778888888899999998888887766554443 2333333333444555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|+.++...++.++.+
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5444433 222222233344444444444444444444432221 233344444444444444444444444
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.3e-07 Score=95.25 Aligned_cols=470 Identities=11% Similarity=0.117 Sum_probs=261.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhh---------------------
Q 005943 112 LKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAAS--------------------- 170 (668)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~--------------------- 170 (668)
..-+-+.+++.--...++.....|. .|..++|+|-..|..+.+-.+.++.+-+-.+..
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 3333445555556666777777775 478888888888877766655444332221110
Q ss_pred ------------------------cCCCchhhhhhhhc----chhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHH
Q 005943 171 ------------------------AYGNVALWNSMLSG----GKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDG 220 (668)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A 220 (668)
...|...|+.++.. .+++++.+++.++. .|+...+.-+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 01355666666644 45666777766664 3455566667777777777777
Q ss_pred HHHhhccC-CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC
Q 005943 221 LALFNFMP-ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ 299 (668)
Q Consensus 221 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 299 (668)
+++++++. ++.+.+- +...-+.|+-...+. +.....+..+++... ..| .+...+..++-
T Consensus 1004 IELLEKIvL~~S~Fse----------~~nLQnLLiLtAika-d~trVm~YI~rLdny---Da~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSE----------NRNLQNLLILTAIKA-DRTRVMEYINRLDNY---DAP------DIAEIAIENQL 1063 (1666)
T ss_pred HHHHHHHhcCCccccc----------chhhhhhHHHHHhhc-ChHHHHHHHHHhccC---Cch------hHHHHHhhhhH
Confidence 77777766 3333221 111112222222222 223333444444221 111 23334455556
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 005943 300 NEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELF 379 (668)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (668)
+++|..+|+..- .+......++.-... + +.|.+.-+. --.+.+|..+..+-.+.|...+|.+-|
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie~i~~---l--dRA~efAe~------~n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIENIGS---L--DRAYEFAER------CNEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHHHhhh---H--HHHHHHHHh------hCChHHHHHHHHHHHhcCchHHHHHHH
Confidence 677777766532 233333333322211 1 222222211 123455666666666666666666655
Q ss_pred ccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhH
Q 005943 380 HRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDIT 459 (668)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 459 (668)
-+. .|+..|...+....+.|.+++-...+...++..-.|... +.++-+|++.+++.+.+++.. -|+...
T Consensus 1128 ika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVAN 1196 (1666)
T ss_pred Hhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchh
Confidence 333 344556666666667777776666666555554444433 345556666666555444433 455555
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
...+.+-|...+.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.+|...+.+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 5666666666666666666655 4456777888888888888877655443 2456888888888887776
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
.-|. |-- .++.....-...++..|...|.+++-..+++.. +.+ .....|..+...|.+- ++++-.+.++-.
T Consensus 1266 rlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1266 RLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred hHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 5553 220 122334556778889999999999999988865 322 3444555555555443 333333332222
Q ss_pred Hh-cC-------CCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 618 LA-TS-------PEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 618 ~~-~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
-. .+ -+....|..+.-+|.+-..||.|.-.
T Consensus 1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11 11 11244677777777777777776544
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=3.2e-09 Score=97.86 Aligned_cols=276 Identities=13% Similarity=0.141 Sum_probs=212.7
Q ss_pred cCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHH
Q 005943 369 LGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVH 445 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 445 (668)
.|++..|++...+-.+. ....|..-+.+-.+.|+.+.+-.++.+..+.-..++....-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999988876543 334555556777788999999999999887655666777777778888899999999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005943 446 AFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD-----------VVSWTGIIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 514 (668)
+.+.+.+ +..+........+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 5567788888999999999999999999887632 235777777766666666666677776
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHH
Q 005943 515 IQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKT 592 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 592 (668)
-.. .+-++..-..++.-+.+.|+.++|.++.++..++ +.+|+.. .++ ...+-++.+.-.+..++. ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4555666677788889999999999999998866 7777622 222 223456666555555544 1223446
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.+.++...|.+++.+.+|...++.+++..|+ ...|..++.++.+.|+.++|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7888999999999999999999999998887 5799999999999999999999988876
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.4e-09 Score=96.95 Aligned_cols=283 Identities=11% Similarity=0.057 Sum_probs=165.6
Q ss_pred CChHHHHHHHccCCCCChhhH---HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH---HHHHHHHHHhccccchHhHHH
Q 005943 370 GNVKSALELFHRLPKKDVVAW---SGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ---FIISSVLKVCSCLASLRRGKQ 443 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~ 443 (668)
++.++|.+.|-+|.+.|..++ -+|-..|-+.|..++|+.+-+.+.++.--+.. ...-.+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555555555554443332 23444455555555555555555443211111 122233344455555666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC--------HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 444 VHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD--------VVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+ ...|.-+...+....+.+.|...+++..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 666555533 2233455566667777777777776665444311 1234455566666778888888888877
Q ss_pred HCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH
Q 005943 516 QSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI 593 (668)
Q Consensus 516 ~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 593 (668)
+. .|+.. .-..+.+.....|+++.|.+.++...+. +..--..+...|..+|...|+.++...++.++ ...+....
T Consensus 208 qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 74 34433 3445566777888888888888888754 33334677788888888888888888888766 34445444
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH--hcCChhhHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA--TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 656 (668)
-..+...-....-.+.|..+..+-+...|.-...+..+-.-.. +-|...+....+++|....+
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4445444444444566777777777777775444443333333 23457777777777776666
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=7.5e-08 Score=87.19 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=46.4
Q ss_pred HHHHHcCCChhHHHHhhhhcCCC---ChhHHHHH-HHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCC
Q 005943 45 LSMYADFTSLNDAHKLFDEMARK---NIVSWTTM-VTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD 120 (668)
Q Consensus 45 l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 120 (668)
+.-+....++..|..+++.-... ....-+.. ..++.+.|++++|...|.-+.+.. . |+...+..|.-...-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~-~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-D-APAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-C-CCcccchhHHHHHHHHHH
Confidence 44455566777777776654321 11122222 334456677777777777666543 2 455555555555555666
Q ss_pred hHHHHHHHHH
Q 005943 121 LDLGRLIHER 130 (668)
Q Consensus 121 ~~~a~~~~~~ 130 (668)
+.+|.++.+.
T Consensus 107 Y~eA~~~~~k 116 (557)
T KOG3785|consen 107 YIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHhh
Confidence 6666665543
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2.9e-10 Score=101.21 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 005943 391 SGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC 470 (668)
Q Consensus 391 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (668)
+.+.++|.+.|.+.+|...|+.-... .|-+.||-.|-..|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------------------------~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------------------------FPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------------------------------------CCchhHHHHHHHHHHHh
Confidence 56778888888888888877766544 24444555555666666
Q ss_pred CChHHHHHHhccCCC--CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
.+++.|+.+|.+-.+ |..+ ...-+.+.+-..++.++|.++|+...+.. +.+......+...|...++++-|+.+|+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH
Confidence 666666666665543 3222 23334555555666667777776666642 2234455555556666667777777777
Q ss_pred hcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP---FKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
++.+- |+ -+.+.|+.+.-+|.-.+++|-++.-|++.. ..| -...|..+.......||+..|.+.|+-++..+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 66632 43 345666666666666667776666666551 113 244677777778889999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++...+..|+.+-.+.|++++|+.+++...+..+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999988776
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.2e-07 Score=91.86 Aligned_cols=409 Identities=14% Similarity=0.082 Sum_probs=234.3
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 283 (668)
+..-+-++.+.+++++|+.+.+.-...... + . .+---.-...+.+..++|...++.. ...+
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~~~~--~----------~-~~fEKAYc~Yrlnk~Dealk~~~~~------~~~~ 109 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGALLVI--N----------S-FFFEKAYCEYRLNKLDEALKTLKGL------DRLD 109 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchhhhc--c----------h-hhHHHHHHHHHcccHHHHHHHHhcc------cccc
Confidence 344444566777778887665543311100 0 0 0001112234578888888888844 2223
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH-
Q 005943 284 VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYT-FTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN- 361 (668)
Q Consensus 284 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 361 (668)
..+-..-...+.+.+++++|+++|+.+.+++..--..- -..++.+-.. .....+......| ..+|..
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----------l~~~~~q~v~~v~-e~syel~ 178 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----------LQVQLLQSVPEVP-EDSYELL 178 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----------hhHHHHHhccCCC-cchHHHH
Confidence 22444445678889999999999999977654321111 1111111110 0011222223333 222322
Q ss_pred --HHHHHHhcCChHHHHHHHccC--------CCCCh----------hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 362 --LIDLYARLGNVKSALELFHRL--------PKKDV----------VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 362 --l~~~~~~~~~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
....+...|++.+|+++++.. .+.|. ..--.|.-.+...|+.++|..+|...+.... +|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-AD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CC
Confidence 345567789999999999877 22111 1233455667789999999999999988764 33
Q ss_pred HHHH----HHHHHHhccccchHh--HHHHHHH-----------HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 005943 422 QFII----SSVLKVCSCLASLRR--GKQVHAF-----------CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 422 ~~~~----~~ll~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 484 (668)
.... |.++ ++..-.++.. ++..++. +...........-+.++..| .+..+.+.++-....
T Consensus 258 ~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 258 EPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred chHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 3222 2222 2222222211 1111111 11111111112223344444 345667777766666
Q ss_pred CCC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHH--------hccc
Q 005943 485 ERD-VVSWTGIIVGCG--QNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFT--------SMKP 551 (668)
Q Consensus 485 ~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~ 551 (668)
... ...+.+++..+. +...+..+.+++...-+. .|.. .....++......|+++.|.+++. .+.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~- 411 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL- 411 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-
Confidence 432 334445554433 223577788888777764 3443 355566667789999999999998 444
Q ss_pred ccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 552 EYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 552 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.+.-.+.+..+++..+.+.++.+-|..++.+. ..++. ..++..++..-.++|+-++|...++++.+.+|
T Consensus 412 --~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 412 --EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred --hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 23334567777888888888877777777655 12222 22344444445678999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
++..+...++.+|++. +.++|..+-+.+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999999999888776 5677777665543
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=3.5e-09 Score=105.06 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHhccCCC-------CC
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVKR-----GF-EKED-ITLTSLIDMYLKCGEIDDGLALFKFMPE-------RD 487 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~ 487 (668)
..++..+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777888888888888887766554 21 1222 2334567788889999999888887653 22
Q ss_pred ----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccC--
Q 005943 488 ----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-----RLK-PNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYG-- 554 (668)
Q Consensus 488 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 554 (668)
..+++.|..+|.+.|++++|...+++..+- |.. |... -++.+...|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 346778888899999999998888876652 222 2222 366777788999999999998887765433
Q ss_pred CCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 555 LEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP---------FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 555 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
+.++ ..+++.|...|...|++++|.++++++- ..+ ....++.+...|.+.+...+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4689999999999999999999998771 122 2557788888999999999999999998762
Q ss_pred -------CCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 621 -------SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 621 -------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.|+...+|..|+.+|.+.|++|+|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 24456678999999999999999999998876
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-07 Score=94.36 Aligned_cols=427 Identities=13% Similarity=0.055 Sum_probs=238.9
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHH
Q 005943 191 FCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLF 270 (668)
Q Consensus 191 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (668)
.+....+..|...|..+.-++.+.|+++.+.+.|++...--.. ..+.|+.+...|...|.-..|..++
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~------------~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG------------EHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------------hHHHHHHHHHHHHHhccchHHHHHH
Confidence 3344556678889999999999999999999999887633221 4567788888888999988999998
Q ss_pred HHhhhhhhcCCCCeeeHHHHH-HHHH-hCCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhccccchHHHHHHH
Q 005943 271 DQYSSWAASAYGNVALWNSMI-SGYV-LNEQNEEAITLLSHIHSS--GM--CIDSYTFTSALKACINLLNFNSRFALQVH 344 (668)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~--g~--~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 344 (668)
+.-... ...|+..+--.++ ..|. +.+.+++++++-.+.... +. ...+..|..+--+|...-.-..-..+
T Consensus 381 ~~~~~~--~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se--- 455 (799)
T KOG4162|consen 381 RESLKK--SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE--- 455 (799)
T ss_pred Hhhccc--ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH---
Confidence 876431 1224333322222 3333 346677777776666552 11 11122222222222211000000000
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 345 GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
+.....++.+.+++..+. |....-.+.--|+..++.+.|.+..++..+.+..-+
T Consensus 456 -----------------------R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 456 -----------------------RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 000112222233322211 111111122223344445555555555555444444
Q ss_pred HHHHHHHHHHhccccchHhHHHHHHHHHH-hCCCC------------------chhHHHHHHHHHH------hcCChHHH
Q 005943 422 QFIISSVLKVCSCLASLRRGKQVHAFCVK-RGFEK------------------EDITLTSLIDMYL------KCGEIDDG 476 (668)
Q Consensus 422 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------------------~~~~~~~l~~~~~------~~~~~~~A 476 (668)
...|..+.-.+...+++..|+.+.+.... .|... ...|...++..+- ..++-...
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 44555444445555555555554443322 11100 0001111111110 01111122
Q ss_pred HHHhccCC----CC--CHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhcCCCH
Q 005943 477 LALFKFMP----ER--DVVSWTGIIVGCGQNG---RAKEAIAYFQEMIQSRLKPNE--------ITFLGVLSACRHAGLV 539 (668)
Q Consensus 477 ~~~~~~~~----~~--~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~ 539 (668)
.+....+. ++ ...++..+..-....+ ..+.. +...-+.|.. ..|......+.+.+..
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 22222221 01 1223332222111111 11111 1111122222 2345566678889999
Q ss_pred HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH--HH
Q 005943 540 EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSI--IA 614 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~ 614 (668)
++|...+.+.. ++.| ....|......+...|++++|.+.|... ...| ++.+..++...+.+.|+...|.. ++
T Consensus 667 ~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 667 DEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 99998888887 4444 5778888888999999999999998877 4556 56678888889999999888888 99
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCceeEEEe
Q 005943 615 EQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAGMSWIEV 666 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 666 (668)
..+.+.+|.++.+|..++.++.+.|+.++|..-|..........|--+|.-|
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i 795 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI 795 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence 9999999999999999999999999999999999999988887777666543
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=1.5e-11 Score=81.21 Aligned_cols=50 Identities=30% Similarity=0.525 Sum_probs=47.6
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005943 282 GNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN 331 (668)
Q Consensus 282 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 331 (668)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=3.6e-11 Score=79.41 Aligned_cols=50 Identities=28% Similarity=0.509 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=4.4e-06 Score=82.17 Aligned_cols=553 Identities=13% Similarity=0.124 Sum_probs=280.6
Q ss_pred HHHhcccCchhhhhhhHHHHHHhc-CCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhH
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYG-LSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 88 (668)
+.....+|++....+.|+..+..= +......|...+...-..|-++.+.+++++..+-++..-+..|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 344455566666666666665441 2233445556666655666666666666666665555566666666666666666
Q ss_pred HHHHHHHHhcCCC-----CCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CC--chHhhHHHhhhhhcCChh--
Q 005943 89 IRLYNHMLEYGSV-----EPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLE--YD--TVLMNTLLDMYVKCGSLT-- 157 (668)
Q Consensus 89 ~~~~~~m~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~ll~~~~~~g~~~-- 157 (668)
-+.+......... +.+...|..+-...++.-+.-.-.. .+.+.+.|+. +| ...|++|-+-|.+.|+++
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6666655432210 0222233333333333222111111 1112222221 12 134455555555555555
Q ss_pred HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCC-CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHH
Q 005943 158 RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFE-KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWT 236 (668)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 236 (668)
+.+|++--. ..-.+..+..+.+.-.++.+.++...++ -+....+.= -.-+++-.+.-|+.+....+...|
T Consensus 268 rDvyeeai~----~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e-----d~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 268 RDVYEEAIQ----TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE-----DDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHHHHHHHH----hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh-----hhhhHHHHHHHHHHHHhccchHHH
Confidence 333332221 0001111122222111122222111111 000000000 111233444455555554444444
Q ss_pred HHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC------eeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005943 237 GIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGN------VALWNSMISGYVLNEQNEEAITLLSHI 310 (668)
Q Consensus 237 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m 310 (668)
+++-.-...++..|..-+..+ .|+..+-...+.+..+. ..|. ...|-.+.+-|-.+|+++.|..+|++.
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 444332223444444444332 34455555555554332 2222 123566666677777777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC-------
Q 005943 311 HSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP------- 383 (668)
Q Consensus 311 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 383 (668)
.+...+- ..-|...++ .-.++=.+..+++.|+++.++..
T Consensus 414 ~~V~y~~----v~dLa~vw~------------------------------~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 414 TKVPYKT----VEDLAEVWC------------------------------AWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred hcCCccc----hHHHHHHHH------------------------------HHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 5533211 111111111 11122222233333333333221
Q ss_pred --------------CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH
Q 005943 384 --------------KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV 449 (668)
Q Consensus 384 --------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 449 (668)
.++...|...+..--..|-++....+|+.+.+..+.......|-.+ -+....-++++.+++++-+
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm-fLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM-FLEEHKYFEESFKAYERGI 538 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhhHHHHHHHHHHHcCC
Confidence 0244567767766667788888899999998876543333333221 2334445677777776544
Q ss_pred HhCCCCch-hHHHHHHHHHHh---cCChHHHHHHhccCCC--CCHhHHHHHHHHH----HhcCChHHHHHHHHHHHHCCC
Q 005943 450 KRGFEKED-ITLTSLIDMYLK---CGEIDDGLALFKFMPE--RDVVSWTGIIVGC----GQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 450 ~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~g~ 519 (668)
..--.|.. ..|+.-+.-+.+ ...++.|..+|++..+ |. ..-..+.-.| -+.|-...|+.++++.... +
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp-~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v 616 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP-EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-V 616 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-C
Confidence 33223332 244444443332 3578999999998876 31 1111122222 2457888999999997654 5
Q ss_pred CCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh---HHHHHHHHhhhcCChHHHHHHHHhCC--CC--CC
Q 005943 520 KPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE---HYYCMVDLLGQAGCFDDAEQLIAEMP--FK--PD 590 (668)
Q Consensus 520 ~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--p~ 590 (668)
++... .|+..|.-....=.+.....+|++..+. -|+.. ...-..+.=.+.|..+.|..++.-.. .. .+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 66543 6888887666655667788899998843 56643 34445566789999999999997662 22 36
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
...|.+.-.--.++|+-+. +++|+.+.
T Consensus 694 ~~fW~twk~FEvrHGnedT----~keMLRik 720 (835)
T KOG2047|consen 694 TEFWDTWKEFEVRHGNEDT----YKEMLRIK 720 (835)
T ss_pred hHHHHHHHHHHHhcCCHHH----HHHHHHHH
Confidence 7778888888899999555 55555533
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4e-07 Score=84.43 Aligned_cols=317 Identities=11% Similarity=0.016 Sum_probs=225.8
Q ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH-hCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHH
Q 005943 314 GMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT-SGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSG 392 (668)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (668)
.+.|...+....+.+++..-..+-..+...+-.+.. .-++.+......+.+.+...|+.++|...|++...-|+.+...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 345555555555555443322211333333333333 3467788889999999999999999999999877554443222
Q ss_pred ---HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 393 ---LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 393 ---l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
..-.+.+.|+.++...+...+.... +-....|-.-.......++++.|..+-++.++.. +.+...|-.-..++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 2334567888888888777775432 1122222223334456678888888888777654 3345555555677788
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-cCCCHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVL-SACR-HAGLVEEAWT 544 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~ 544 (668)
.+++++|.-.|+.... | +...|.-|+.+|...|++.+|..+-.+.... ++-+..+...+. ..|. ....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 9999999999987653 3 7889999999999999999999888776654 344556665553 3333 3334578999
Q ss_pred HHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 545 IFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 545 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
+++... ...|+ ....+.+...+...|..+++..++++. ..-||....+.+...+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 998887 55776 667788889999999999999999987 5678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHH
Q 005943 623 EDPSKYVMLSNVYA 636 (668)
Q Consensus 623 ~~~~~~~~l~~~~~ 636 (668)
.+..+..-+-..-.
T Consensus 503 ~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEK 516 (564)
T ss_pred cchHHHHHHHHHHh
Confidence 99877776654433
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.2e-08 Score=92.30 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=211.1
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 005943 351 GYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS 427 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 427 (668)
+..-+..+.....+-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+-.+|++.- +-.+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3344555556666777788899999999888876544 455566778888898888888888887763 455678888
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCh
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRA 504 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 504 (668)
+..-|...|+.++|.+.|.+..... +.-...|-...+.|+-.|.-+.|+..+....+ | ....+--+..-|.+.+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 8888888899999999998776543 22235677788889999999998888775543 2 122233355567888999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccC-C---CC-ChhHHHHHHHHhhhcCChHHH
Q 005943 505 KEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-L---EP-HLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.|.++|.+... +.|+ +..++-+.-.....+.+.+|..+|+....... + .+ -..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999998887 5554 55667776667778999999999988762111 1 11 234688899999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 579 EQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 579 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..+++. . .+.+..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999987 3 3457888888998999999999999999999999999977666666543
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.7e-07 Score=88.68 Aligned_cols=462 Identities=11% Similarity=0.080 Sum_probs=250.1
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHh--cCC
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYT--SNK 83 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~~ 83 (668)
+.+=+.-+...|++++|.+...+++..+ +.+...+..-+-++.+.+++++|+.+.+.-....+...-.+=.+|| +.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3444556777889999999999999876 6677778888888899999999998777654322221111355555 678
Q ss_pred ChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCchHhhHHHhhhhhcCChhHHHHh
Q 005943 84 RPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLE-YDTVLMNTLLDMYVKCGSLTRKLFD 162 (668)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~~~~~ 162 (668)
..++|+..++ |..+.|..+...=.+.|.+.|++++|..+++.+.+++.+ -|...-..++.+-...
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--------- 159 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--------- 159 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh---------
Confidence 9999999888 322133335555667889999999999999999887643 1222222222221110
Q ss_pred hhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHH---HHHhCCChHHHHHHhhccC--------CCC
Q 005943 163 QYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLID---MYLKCGEIDDGLALFNFMP--------ERD 231 (668)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~--------~~~ 231 (668)
.+. .+......| ..+|..+.. .++..|++.+|+++++... ..+
T Consensus 160 ------------------------~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 160 ------------------------QVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred ------------------------hHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 010 122222223 445555543 4567899999999998873 111
Q ss_pred cc--hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee----HHHHHHHHHhCCChh-HHH
Q 005943 232 VV--SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL----WNSMISGYVLNEQNE-EAI 304 (668)
Q Consensus 232 ~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~-~a~ 304 (668)
.. -+..-+ ..+---+.-++-..|+.++|..++..+.+. ..+|... -|.|+..-....-++ .++
T Consensus 214 ~~eEeie~el-------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 214 TNEEEIEEEL-------NPIRVQLAYVLQLQGQTAEASSIYVDIIKR---NPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred cchhhHHHHH-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh---cCCCchHHHHHhcchhhhccccccCchHHH
Confidence 10 000000 011122333444556666666666555442 2222211 111111111111111 111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC
Q 005943 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK 384 (668)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (668)
..++..... +. +....-+..-. .-....-+.++.+| .+..+.+.++...++.
T Consensus 284 ~~k~~~~~~--------l~--------------~~~l~~Ls~~q----k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 284 KSKKSQVFK--------LA--------------EFLLSKLSKKQ----KQAIYRNNALLALF--TNKMDQVRELSASLPG 335 (652)
T ss_pred HHHHHHHHH--------hH--------------HHHHHHHHHHH----HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc
Confidence 111111100 00 00000000000 00011112233333 3556667776666665
Q ss_pred CC-hhhHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHH--------HHHHhCC
Q 005943 385 KD-VVAWSGLIMGCTK--HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHA--------FCVKRGF 453 (668)
Q Consensus 385 ~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~ 453 (668)
.. ...+..++....+ ......+.+++...-+....-+....-..+......|+++.|.+++. .+.+.+.
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 43 3344444443322 22466677777666555444344555666667777888888888887 4444443
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC------CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE------RDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
. +.+...++..+.+.++-+.|.+++.+..+ +... ++.-+...-.+.|+.++|..+++++.+.. ++|.
T Consensus 416 ~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~ 492 (652)
T KOG2376|consen 416 L--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDT 492 (652)
T ss_pred C--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchH
Confidence 3 34556677777777777777777665442 1222 22233333356688888888888888752 5566
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.+...++.+|++. +++.|..+-..+.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 6777777777765 4566666544443
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=6.8e-09 Score=108.51 Aligned_cols=245 Identities=13% Similarity=-0.013 Sum_probs=173.0
Q ss_pred CcHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhc---------cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 402 LNSLAYLLFRDMINSNQDVNQ-FIISSVLKVCS---------CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
+.++|..+|++..+.. |+. ..+..+..++. ..++.++|...+++..+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467777887776543 332 23333322221 3355788888888887775 556777888888889999
Q ss_pred ChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 005943 472 EIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 472 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 4 4567888889999999999999999999985 55532 33344445667899999999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTI-WASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
++... ..| +...+..+..+|...|+.++|...+.++ ...|+... .+.+...+...| +.|...++++.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88743 235 3556778888999999999999999987 34455444 444445566666 47777777777733222
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.-...+..+|.-.|+.+.+..+ +++.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 22333377778888998888887 77766543
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=4.3e-09 Score=89.67 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL 568 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 568 (668)
...|.-.|.+.|+...|..-+++.+++ .|+. .++..+...|.+.|..+.|.+-|++.. .+.| +-.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 444566677777777777777777774 4543 366777777777777777777777766 4455 35666777777
Q ss_pred hhhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 569 LGQAGCFDDAEQLIAEMPFKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
++..|++++|...|+..-..| -..+|..+.....+.|+++.|...+++.++.+|+.+.....++..+...|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777663222 2346666666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 777777665544
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=1.2e-08 Score=94.90 Aligned_cols=196 Identities=15% Similarity=0.141 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMY 467 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (668)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------PDDYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHH
Confidence 456666677777777777777777665432 22334444455555
Q ss_pred HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHH
Q 005943 468 LKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 556666666665554442 233455556666667777777777777776542222 2335555666777778888888
Q ss_pred HHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 544 TIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 544 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
..+++.... .| +...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|+.+.|..+.+.+...
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 877777632 33 3556777777777888888888777766 22 234555556666677778888888777776655
Q ss_pred CC
Q 005943 621 SP 622 (668)
Q Consensus 621 ~p 622 (668)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=7e-09 Score=108.43 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=164.7
Q ss_pred cchHhHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCC
Q 005943 436 ASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYL---------KCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 503 (668)
++.++|...+++..+.. +.+...+..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888898887664 334455555555443 23457899999988774 4 56778888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQL 581 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 581 (668)
+++|+..|++..+. .|+ ...+..+..++...|++++|...+++.. ...|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999995 565 5578888889999999999999999998 446653 3334445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 582 IAEMP--FKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 582 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++++. ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+...
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 98872 2354 4446667777889999999999999998888988888888888888888 488888888776533
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=8.4e-07 Score=88.18 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=110.5
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
+.+......+.+|..+++.+..... ....|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+|++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3444555667777777776665532 23345566677777777777777776543 3455666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFK 588 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (668)
++-.+.. |-......|..-..-+-+.|++.+|.++|-.+. .|+.. +..|-+.|..++.+++..+-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~a-----iqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDKA-----IQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchHH-----HHHHHhhCcchHHHHHHHHhChh
Confidence 7655432 222333345555555666777777776654443 34432 45666777777777776665311
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
--..|...+..-+...|+.+.|.+-|-++ .-+...+..|..++.|++|-++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 12234444555555666666666555442 23444445555555555555544
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.3e-06 Score=79.29 Aligned_cols=449 Identities=15% Similarity=0.122 Sum_probs=212.0
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCC
Q 005943 76 VTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGS 155 (668)
Q Consensus 76 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 155 (668)
+.-+...+++..|+.+++.-...+.. -...+-..+..++...|++++|...+..+.... .|+...+-.|--++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 44456678888888888776654422 122233334556678889999988888877643 3333333222222222222
Q ss_pred hh--HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChh-hHHHHHHHHHhCCChHHHHHHhhccCCCCc
Q 005943 156 LT--RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDV-TLTSLIDMYLKCGEIDDGLALFNFMPERDV 232 (668)
Q Consensus 156 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 232 (668)
.. +.+-.. . |+.. .-..|.....+.|+-++-..+-+.+.+...
T Consensus 107 Y~eA~~~~~k---------------------------------a-~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~E 152 (557)
T KOG3785|consen 107 YIEAKSIAEK---------------------------------A-PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLE 152 (557)
T ss_pred HHHHHHHHhh---------------------------------C-CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHH
Confidence 22 111110 1 2222 223333444455555555555544442111
Q ss_pred chHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHH-HHHHhCCChhHHHHHHHHHH
Q 005943 233 VSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMI-SGYVLNEQNEEAITLLSHIH 311 (668)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~ 311 (668)
... +|..+....-.+.+|++++.++.. ..|+-...|.-+ -+|.+..-++-+.+++..-.
T Consensus 153 dqL----------------SLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 153 DQL----------------SLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHH----------------hHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 110 222333333456667777766644 344444444433 34455555666666665554
Q ss_pred hCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhc-----CChHHHHHHHccCCCCC
Q 005943 312 SSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARL-----GNVKSALELFHRLPKKD 386 (668)
Q Consensus 312 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~ 386 (668)
.. .||+ |+..=+.+|....-+....+..-.+.+.+.+-.. | ..+.-+++. .+-+.|++++-.+.+.-
T Consensus 213 ~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 213 RQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred Hh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 42 1332 2222233333322222233333333333222111 0 122222222 34456666665544433
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH-----hccccchHhHHHHHHHHHHhCCCCchhH-H
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV-----CSCLASLRRGKQVHAFCVKRGFEKEDIT-L 460 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 460 (668)
+.+--.|+--|.+.++..+|..+.+++. ...|-......+..+ ........-|.+.|+..-+.+...|... -
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 3333344445677788888877776652 122333333222222 1222234445555555544443333221 2
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhc
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL-GVLSACRH 535 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~ 535 (668)
.++..++.-..++++++..++.+.. .|...|| +..+++..|.+.+|.++|-......++ |..+|. .+.++|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 2334444445566666666655542 2333333 556666667777777776555433222 334443 34446667
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWA 595 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 595 (668)
.+.++.|+.++-.+.. ..-.......+.+-+.+++.+--|.+.|+.+ ...|++..|.
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 7777777666554431 1112333444555666666666666666665 2445555553
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=5.6e-06 Score=82.54 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCCh
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRP 85 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 85 (668)
....+.+....+.|+.|..+++.+..+.. -...|..+.+-|+..|+++-|.++|-+.. .++-.|..|.+.|+|
T Consensus 735 ~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 735 LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccH
Confidence 44566777778899999999998887652 33457778888999999999999997653 456678889999999
Q ss_pred hhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 86 NWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 86 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
..|.++-++.... . .....|-+-..-+-+.|++.+|.+++-.+- .|+. .|..|-+.|..+
T Consensus 808 ~da~kla~e~~~~--e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--E-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHHHHHHHhcCc--h-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcch
Confidence 9998886665432 2 455667777777788888888888765432 2332 345555555544
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=4.1e-09 Score=100.52 Aligned_cols=218 Identities=10% Similarity=-0.029 Sum_probs=107.3
Q ss_pred hcCCcHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005943 399 KHGLNSLAYLLFRDMINSN-QDVN--QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 399 ~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (668)
..+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3445566666666666432 1222 2334444455566666666666666655543 3345566666666666666666
Q ss_pred HHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 476 GLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 476 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
|...|+...+ | +...|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 6666665543 3 2345555555666666666666666666653 34332111111223344556666666644332
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHH--HHHHHHhC-CCCC-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDD--AEQLIAEM-PFKP-----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|+...+ .+... ..|+..+ +.+.+.+. ...| ....|..+...+.+.|++++|...|+++.+.+|.+
T Consensus 194 -~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 222322211 12222 2333322 22222211 1111 12345555666666666666666666666666543
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.6e-09 Score=96.71 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=185.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPK--KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
.--+-+..+|.+.|-+.+|++.|+...+ +-+.||-.|.+.|.+..++..|+.++.+-.+. .
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--f--------------- 286 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--F--------------- 286 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--C---------------
Confidence 3345688999999999999999987654 57788999999999999999999999887654 1
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
+.++....-+...+-..++.++|.++|+...+ .++....++...|...++.+-|+.+|
T Consensus 287 -------------------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 287 -------------------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred -------------------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 33333344455666667788888888887765 35666777778888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC--CC
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM--PF 587 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~ 587 (668)
+++.+.|+. ++..|+.+.-+|...+.+|-++.-|++.... --.|+ ..+|-.+.......|++.-|.+.|+-. ..
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 999999854 6678888888999999999999988888754 33344 567888888889999999999999876 33
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
..+...++.+...-.+.|+++.|..++..+....|+-...
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 3466788988888899999999999999999988875443
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.4e-05 Score=81.05 Aligned_cols=233 Identities=13% Similarity=0.048 Sum_probs=176.3
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
+..|+.+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-..++...++..-.|.+ -+.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 457889999999999999988877543 46788999999999999999999999888887655554 4578899
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
|++.++..+.++++ ..||+.....+..-|...|.++.|.-+|... ..|..+...+...|+++.|...-
T Consensus 1176 yAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988877664 3578888888888889999998887776543 34677777788888888887664
Q ss_pred HhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 547 TSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++.. +..+|..+..+|...+.+.-|. +..+.+-....-..-++.-|...|.+++-+.+++..+.+......
T Consensus 1244 RKAn-------s~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1244 RKAN-------STKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred hhcc-------chhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 4432 4678888888887766554332 111122345566788999999999999999999999999888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.+..|+-+|.+- +.++-.+.++
T Consensus 1315 mfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1315 MFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHH
Confidence 888888777654 3344444443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=1.7e-06 Score=85.25 Aligned_cols=384 Identities=10% Similarity=0.038 Sum_probs=206.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
.+.+.|..+.-.+....++++|+..|+.....+.. +...+..+.-.-+..|+++..........+
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLq--- 137 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQ--- 137 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---
Confidence 35667777777777788888999888877733322 455666666666666777666666555544
Q ss_pred cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCcc
Q 005943 279 SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSG-MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDY 356 (668)
Q Consensus 279 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (668)
..| ....|..+..++.-.|+...|..++++..+.. -.|+...|......+.
T Consensus 138 -l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly-------------------------- 190 (700)
T KOG1156|consen 138 -LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY-------------------------- 190 (700)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH--------------------------
Confidence 333 34557777777778888888888888877654 2455555532211111
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCC--Chh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKK--DVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCS 433 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 433 (668)
-.....+.|..+.|.+.+...... |-. .-..-...+.+.++.++|..++..++.. .||..-|...+..+.
T Consensus 191 -----~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 191 -----QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred -----HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 112234567777777776655442 222 2233445667788888888888888765 355555544443332
Q ss_pred -cccchHhH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005943 434 -CLASLRRG-KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYF 511 (668)
Q Consensus 434 -~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 511 (668)
+..+.-++ ..++....+.- |.......+ ..+ ...-..-.+..-.++
T Consensus 264 gk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rl--------------------------pls----vl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 264 GKIKDMLEALKALYAILSEKY--PRHECPRRL--------------------------PLS----VLNGEELKEIVDKYL 311 (700)
T ss_pred HHHhhhHHHHHHHHHHHhhcC--cccccchhc--------------------------cHH----HhCcchhHHHHHHHH
Confidence 11111111 12222222110 000000000 000 000011112223334
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCCHH---H-HHHHHHhcccc---------cCCCCChh--HHHHHHHHhhhcCChH
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHAGLVE---E-AWTIFTSMKPE---------YGLEPHLE--HYYCMVDLLGQAGCFD 576 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~-a~~~~~~~~~~---------~~~~p~~~--~~~~l~~~~~~~g~~~ 576 (668)
..+.+.|+++--..+..+-. .-...+ + +..+...+... ..-+|+.. ++-.++..+-+.|+++
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 44455554432222222211 111100 0 11111111100 00144433 3445667777888888
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 577 DAEQLIAEM-PFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 577 ~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.|..+++.. .-.|+.. .|..-.+.+...|+.+.|..+++++.+++..|..+-...++-..+..+.++|.+++......
T Consensus 389 ~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 888888776 4445433 44445566777788888888888888888777766667777778888888888887777665
Q ss_pred CC------CCCceeEEEe
Q 005943 655 GE------KKAGMSWIEV 666 (668)
Q Consensus 655 ~~------~~~~~~~~~~ 666 (668)
|. .+....|.++
T Consensus 469 ~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 469 GFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred ccchhhhHHHhhhHHHhH
Confidence 53 2334555554
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=1.6e-06 Score=87.65 Aligned_cols=415 Identities=12% Similarity=0.059 Sum_probs=255.0
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
...+...|++++|++.++.-...-+. ...........+.+.|+.++|..++..+.. ..|+...|
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~D------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~----rNPdn~~Y 74 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILD------------KLAVLEKRAELLLKLGRKEEAEKIYRELID----RNPDNYDY 74 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHH
Confidence 45567899999999999875533221 356777888999999999999999999977 56666655
Q ss_pred HHHHHHHH-h-----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHH
Q 005943 288 NSMISGYV-L-----NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSN 361 (668)
Q Consensus 288 ~~li~~~~-~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (668)
...+..+. - ..+.+....+|+++...- |.......+.-.+.. |+--...+...+..+.+.|+++ +++.
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~ 148 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSN 148 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHH
Confidence 55444443 1 235677888898886643 433333222222222 2211145556666667777654 4444
Q ss_pred HHHHHHhcCChHHHHHHHccCC----C--------------CCh--hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 005943 362 LIDLYARLGNVKSALELFHRLP----K--------------KDV--VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVN 421 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~----~--------------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 421 (668)
|-..|.......-..+++.... . |.. .++.-+...|...|++++|++++++.++.. |+
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt 226 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT 226 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC
Confidence 4445554444333344433321 1 122 244666788999999999999999988764 44
Q ss_pred -HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCH------h----H
Q 005943 422 -QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDV------V----S 490 (668)
Q Consensus 422 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~----~ 490 (668)
+..|..-.+.+-+.|++.+|...++..+... ..|...-+-.+..+.+.|+.++|.+++....+++. . .
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 6677888889999999999999999998876 45677777788999999999999999988776441 1 1
Q ss_pred H--HHHHHHHHhcCChHHHHHHHHHHHHC--CCC-------------CCHHHHHHHHHHhhcCCC-------HHHHHHHH
Q 005943 491 W--TGIIVGCGQNGRAKEAIAYFQEMIQS--RLK-------------PNEITFLGVLSACRHAGL-------VEEAWTIF 546 (668)
Q Consensus 491 ~--~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~-------------p~~~~~~~ll~~~~~~g~-------~~~a~~~~ 546 (668)
| .....+|.+.|++..|+..|....+. .+. ....+|.-+++..-+... ...|.+++
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 2 33467889999999998887776653 111 222233333332222111 13455555
Q ss_pred HhcccccCCCCCh-----------hHHHHHHHHh---hhcCChHHHHHHH-H----------hC----CCCCCHHHHHHH
Q 005943 547 TSMKPEYGLEPHL-----------EHYYCMVDLL---GQAGCFDDAEQLI-A----------EM----PFKPDKTIWASM 597 (668)
Q Consensus 547 ~~~~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~~-~----------~~----~~~p~~~~~~~l 597 (668)
-.+.......... .--..+..-. .+....+++...- + +. +.+.|... .
T Consensus 386 l~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~ 462 (517)
T PF12569_consen 386 LELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---L 462 (517)
T ss_pred HHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---c
Confidence 5554321111000 0001111111 1111111111111 0 00 11112111 1
Q ss_pred HHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 598 LKACETHN-NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 598 ~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
..-+.+.. =.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+++
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 22223444 477799999999999999999999999999999999988887764
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.1e-07 Score=95.76 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=152.3
Q ss_pred HHHHHhcCChHHHHHHHccCCCC--Ch-hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc-cccch
Q 005943 363 IDLYARLGNVKSALELFHRLPKK--DV-VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCS-CLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~ 438 (668)
...+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|...+..+. -...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~- 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ- 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc-
Confidence 34456677777777777664432 32 334455666777777777777777777664 34443333333222 0000
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRA-KEAIAYFQEMI 515 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~ 515 (668)
......+...++|+++.. |.......+.-.+.....+ ..+..++..+.
T Consensus 88 -----------------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 88 -----------------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred -----------------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 000122333333333321 1111111111111111112 23444555666
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc-------------CCCCCh--hHHHHHHHHhhhcCChHHHHH
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY-------------GLEPHL--EHYYCMVDLLGQAGCFDDAEQ 580 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 580 (668)
..|+++ +|..+-..|......+-..+++....... .-+|+. .++..+...|-..|++++|++
T Consensus 139 ~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666544 34444444444444444444444432210 113443 345667888889999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 581 LIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 581 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++++. ...|. +..|..-...+-+.|++++|.+..+.+.++++.|..+-...+..+.+.|++++|.+++......+.
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99877 44565 567777888888999999999999999999999998888999999999999999999988876664
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.5e-06 Score=77.16 Aligned_cols=420 Identities=12% Similarity=0.042 Sum_probs=231.8
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
|+....--+...+..+.+..++.+|++++....++++. +....+.|...|....++..|-..++++..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555777888888999999999999888776654 355677888889999999999999999866
Q ss_pred hhhcCCCCeeeHHHH-HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhCC
Q 005943 276 WAASAYGNVALWNSM-ISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN--LLNFNSRFALQVHGLIVTSGY 352 (668)
Q Consensus 276 ~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~~~a~~~~~~~~~~~~ 352 (668)
..|...-|... ...+.+.+.+..|+++...|... |+...-..-+.+..+ .+++ ..+..+.++.-.
T Consensus 73 ----l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl--~g~rsLveQlp~--- 140 (459)
T KOG4340|consen 73 ----LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDL--PGSRSLVEQLPS--- 140 (459)
T ss_pred ----hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccC--cchHHHHHhccC---
Confidence 56655555433 45677888899999998888653 222221222222222 2233 333333333211
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005943 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSV 428 (668)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 428 (668)
+-+..+.+.......+.|+.+.|.+-|+...+- ....||..+..| +.|+...|+++..+++++|++..+..-..+
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 112333333333445666666666666655542 334555444433 446666666666666666653222100000
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CCHhHHHHHHHHHHhcCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RDVVSWTGIIVGCGQNGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 503 (668)
..--.....+..-..+ -.. .-+..+|.-...+.+.++++.|.+.+..|+- -|+++...+.-.- -.++
T Consensus 220 ~tegiDvrsvgNt~~l----h~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~ 291 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVL----HQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR 291 (459)
T ss_pred eeccCchhcccchHHH----HHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence 0000000000000000 000 0011233334445688999999999999984 3666655443221 2344
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+.+..+-+.-+.+.. +-...||..++-.||+..-++.|-.++.+-..- ... .+...|+.|=....-.-..++|.+-+
T Consensus 292 p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKL 369 (459)
T ss_pred ccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 555555555555542 234569999999999999999999888665421 221 23445554433334455677777766
Q ss_pred HhCCCCCCHHHHHHHHHH-HHhhCCHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 583 AEMPFKPDKTIWASMLKA-CETHNNTK----LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 583 ~~~~~~p~~~~~~~l~~~-~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.+....-...-...+.. -.++.+-+ .+.+-|++.+++.- .+....++.|....|+..+.+.|+...+
T Consensus 370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 655211111111112222 12222222 23334444444332 2567788899999999999999887654
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=2.4e-08 Score=93.66 Aligned_cols=251 Identities=13% Similarity=0.091 Sum_probs=133.4
Q ss_pred HHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 363 IDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
++-+.-.|++..++.-.+ .... +.....-+.+++...|+.+.++ .++.... .|....+..+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344455688888875444 2221 2223445567777778766443 3333332 56655555555555443444
Q ss_pred HhHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 439 RRGKQVHAFCVKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
+.+..-++.....+.. .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444333332222222 22222233334556677777777777665 44555566667777777777777777777663
Q ss_pred CCCCCHHHHHHHHHHh----hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CH
Q 005943 518 RLKPNEITFLGVLSAC----RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DK 591 (668)
Q Consensus 518 g~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 591 (668)
..|.. ...+..++ .-.+.+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+. ...| +.
T Consensus 161 --~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 --DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp --SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred --CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 33432 22222222 223357777777777654 34456666777777777777777777776665 2223 44
Q ss_pred HHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCCc
Q 005943 592 TIWASMLKACETHNNT-KLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 625 (668)
.++..++......|+. +.+.+++.++....|+.+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 4555555555555555 556666666666666654
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=4e-06 Score=86.56 Aligned_cols=582 Identities=13% Similarity=0.015 Sum_probs=299.6
Q ss_pred chhhhhhhHHHHHHhcCCCC-ccchHHHHHHHHcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChhhHHHHHH
Q 005943 18 SIKQGKSLHCRIIKYGLSQD-IFTGNNLLSMYADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPNWAIRLYN 93 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 93 (668)
+...+...|-+.++.. |+ ...|..|...|...-+...|.+.|+..-+ .+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 32 33688888888887788888888888765 355577888888888889988888844
Q ss_pred HHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhc
Q 005943 94 HMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASA 171 (668)
Q Consensus 94 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~ 171 (668)
..-+......-..-|..+.-.+.+.++...|..-|+...+..+ -|...|..+..+|..+|+.. -++|+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----- 624 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL----- 624 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh-----
Confidence 4333321101112223334456678888888888888776543 36778888888888888877 555544443
Q ss_pred CCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHH--HHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhh
Q 005943 172 YGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLI--DMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFT 249 (668)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (668)
+.|+ .+|...- -.-+..|.+++|+..+..+...-. .+.+...+ -..+
T Consensus 625 -------------------------LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s-~e~~~q~g----LaE~ 673 (1238)
T KOG1127|consen 625 -------------------------LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS-LERTGQNG----LAES 673 (1238)
T ss_pred -------------------------cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHhhhh----HHHH
Confidence 1232 2233222 234567888998888876661100 00000000 2233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhh-----hhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 250 LSALVDMYSNCNVLCEARKLFDQYSSW-----AASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+-.+...+.-.|-...|..+|+.-.+. ......+...|-.+ ..|..+|-... .. .|+.....+
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~i 741 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLII 741 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHH
Confidence 333333344444444455544443210 00001111112211 12223333322 11 233333333
Q ss_pred HHHHHHhccccchHH--HHHHHHHHHHhCCCCccchHHHHHHHHHh----cC----ChHHHHHHHccCCC---CChhhHH
Q 005943 325 ALKACINLLNFNSRF--ALQVHGLIVTSGYELDYIVGSNLIDLYAR----LG----NVKSALELFHRLPK---KDVVAWS 391 (668)
Q Consensus 325 ll~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~---~~~~~~~ 391 (668)
+..-.-..+...... ....-.-.....+..++..|..+...|.+ ++ +...|...++...+ .+..+|+
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn 821 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN 821 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH
Confidence 322222222221111 00000011111122234444444444333 22 22345555554432 4667777
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
.|--. ...|++.-+...|-+-.... +....+|..+--.|....+++.|...|...+... +.+...+--........|
T Consensus 822 aLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 822 ALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence 76555 44566666666665544332 3445567777777888888999998888776553 233333332222333456
Q ss_pred ChHHHHHHhccCC-----C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHhh
Q 005943 472 EIDDGLALFKFMP-----E---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS---------RLKPNEITFLGVLSACR 534 (668)
Q Consensus 472 ~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------g~~p~~~~~~~ll~~~~ 534 (668)
+.-++..+|..-. . ++..-|-+.......+|++++-+...+++-.. |.+-....|........
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 6667777766521 1 34444444444455666655544433333221 22333446666666666
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHH----HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYY----CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+.+.+..|.+...+...-...+.+...|+ .+.+.+...|.++.|..-+.......+..+...-+.. .-.++++++
T Consensus 979 hL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~s 1057 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHH
Confidence 66666666665555432112233444444 3345566667777776666555444444433333333 334578888
Q ss_pred HHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.+.|++++.+..++. .....++......+..+.|+..+-+....
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 888888877543332 33444555555666777777766555443
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9e-06 Score=75.72 Aligned_cols=297 Identities=10% Similarity=-0.015 Sum_probs=202.0
Q ss_pred CCCccchHHHHHHHHHh--cCChHHHHHHHccCC-----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHH
Q 005943 352 YELDYIVGSNLIDLYAR--LGNVKSALELFHRLP-----KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFI 424 (668)
Q Consensus 352 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 424 (668)
++|........+.+++. .++...|...+-.+. ..|+.....+...+...|+..+|+..|++.... .|...+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 34444444444555444 344444444333222 247788889999999999999999999987643 333221
Q ss_pred -HHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHh
Q 005943 425 -ISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQ 500 (668)
Q Consensus 425 -~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 500 (668)
.....-.+...|+.+....+...+.... ..+...|-.-........+++.|+.+-++..+. ++..|-.-...+..
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 1111223356677777777766665432 112222222233344567888898888877753 44455555567889
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH-HHhh-hcCChHH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV-DLLG-QAGCFDD 577 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~ 577 (668)
.|+.++|.-.|+.... +.| +..+|..++.+|...|...+|.-.-....+ -+..+..+...+. .++. ...--++
T Consensus 347 ~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred ccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHH
Confidence 9999999999999887 465 456999999999999999998877666553 2333445544442 2222 2223578
Q ss_pred HHHHHHhC-CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 578 AEQLIAEM-PFKPDK-TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 578 A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|.+++++. ...|+- ...+.+...|...|..+.++.++++.+...|++ .....|++++...+.+.+|...+......+
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999877 667764 355666677889999999999999999999885 688999999999999999999998877665
Q ss_pred C
Q 005943 656 E 656 (668)
Q Consensus 656 ~ 656 (668)
+
T Consensus 502 P 502 (564)
T KOG1174|consen 502 P 502 (564)
T ss_pred c
Confidence 5
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=4e-07 Score=86.92 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=146.1
Q ss_pred cchHhHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHH
Q 005943 436 ASLRRGKQVHAFCVKRG-FEKE--DITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIA 509 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 509 (668)
+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.+.|...|++..+ | +...|+.+...+...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 2222 34567777788889999999988887764 3 56788888899999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--C
Q 005943 510 YFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--P 586 (668)
Q Consensus 510 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 586 (668)
.|++..+ +.|+ ..++..+..++...|++++|.+.+++..+ ..|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999887 4565 45777788888889999999999988874 3565332222233345567889999988654 2
Q ss_pred CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CC
Q 005943 587 FKPDKTIWASMLKACETHNNTKLVSIIAEQLL-------ATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KK 658 (668)
Q Consensus 587 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~ 658 (668)
..|+. |. ........|+...+ +.++.+. +..|....+|..++.++.+.|++++|+..+++..+.++ .+
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 22332 22 12222234444333 2334443 34556677899999999999999999999999888776 54
Q ss_pred Cce
Q 005943 659 AGM 661 (668)
Q Consensus 659 ~~~ 661 (668)
+.+
T Consensus 271 ~e~ 273 (296)
T PRK11189 271 VEH 273 (296)
T ss_pred HHH
Confidence 443
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=1.1e-07 Score=94.72 Aligned_cols=235 Identities=16% Similarity=0.168 Sum_probs=151.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCC----------Chh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKK----------DVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
.+...+...|...|+++.|+.+++...+. .+. ..+.+...|...+++.+|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34444667777777777777776654321 111 1223445566666666666666665421
Q ss_pred HHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------CCHh-HHHHH
Q 005943 426 SSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----------RDVV-SWTGI 494 (668)
Q Consensus 426 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l 494 (668)
++.......+.-..+++.|..+|.+.|++++|...+++..+ +.+. .++.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 11111111122234556666677777777776666554431 2222 35666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhccccc----C-CCC-ChhH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS---RLKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPEY----G-LEP-HLEH 561 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~ 561 (668)
...+...+++++|..++++..+. -..++. .+++.+...|...|++++|.++++.+.... + ..+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788888888888888776553 112222 378889999999999999999888876542 1 122 2456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM--------PFKPDK-TIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
++.|...|.+.+++.+|.++|.+. +..|+. .+|..|...|.+.|+++.|.++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888898889888888888765 234443 4789999999999999999999998875
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.89 E-value=9.7e-06 Score=81.71 Aligned_cols=398 Identities=13% Similarity=0.024 Sum_probs=220.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHc-CCCHHHHHHHHHHhhhh--
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSN-CNVLCEARKLFDQYSSW-- 276 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-- 276 (668)
..+.|..+-..|...|.-..|..+++.-..+...+ +++..+-.....|.+ .+.++++..+-.++...
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p----------s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~ 425 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP----------SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLG 425 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC----------CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhh
Confidence 45667777788888888888888888766433111 144455555555555 46666666665555431
Q ss_pred hhcCCCCeeeHHHHHHHHHhC-----------CChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhccccchHHHHHHH
Q 005943 277 AASAYGNVALWNSMISGYVLN-----------EQNEEAITLLSHIHSSG-MCIDSYTFTSALKACINLLNFNSRFALQVH 344 (668)
Q Consensus 277 ~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~ 344 (668)
+.........|-.+.-+|... ....++++.+++..+.+ -.|+...|..+ -++..+++ ..|....
T Consensus 426 ~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l--~sAl~~~ 501 (799)
T KOG4162|consen 426 GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQL--TSALDYA 501 (799)
T ss_pred hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhH--HHHHHHH
Confidence 111122333444444444321 12345666666666543 23333333322 23333444 5566666
Q ss_pred HHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc--CCC
Q 005943 345 GLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS--NQD 419 (668)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~ 419 (668)
.+..+.+-..+...|..|.-.+...+++.+|+++.+...+. |-.....-+..-..-++.++++.....+..- ...
T Consensus 502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~ 581 (799)
T KOG4162|consen 502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY 581 (799)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh
Confidence 66665555555556665555555666666666665544321 1111111111222244555555444443220 000
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHH--hCCCCchhHHHHH---HHHHHhcCChHHHHHHhccCCCCC------H
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVK--RGFEKEDITLTSL---IDMYLKCGEIDDGLALFKFMPERD------V 488 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~------~ 488 (668)
+-. ..++-....+....+.- ....-.+.++..+ +..-.+.-..+..+..+.....|+ .
T Consensus 582 ~~q-----------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~ 650 (799)
T KOG4162|consen 582 GVQ-----------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQ 650 (799)
T ss_pred hHh-----------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHH
Confidence 000 00000000011100000 0001112233222 221112222222222222223343 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 567 (668)
..|......+.+.+..++|...+.+.... .+-....|......+...|.+++|.+.|.... .+.|+ +....++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 34556667788888999998888777764 23344567777778888999999999998887 67885 788999999
Q ss_pred HhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 568 LLGQAGCFDDAEQ--LIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 568 ~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++.+.|+..-|.. ++.++ ...| +...|..+...+.+.|+.+.|-+.|..+.++.+.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777776 88777 4444 7789999999999999999999999999998877764
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.88 E-value=0.00012 Score=72.65 Aligned_cols=587 Identities=11% Similarity=0.065 Sum_probs=331.9
Q ss_pred HHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCCh---hHHHHHHHHHhcC
Q 005943 6 IVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI---VSWTTMVTAYTSN 82 (668)
Q Consensus 6 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~ 82 (668)
|..++.. -..+..+..+.+.+.+++ +.+-...+.....-.+...|+.++|......-.+.|+ +.|..+.-.+-..
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3344433 345567777777777776 3333444555555556678899999988887766444 4577777777778
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHH
Q 005943 83 KRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKL 160 (668)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~ 160 (668)
+++++|++.|......+ + .|...+.-+.-.-+..|+++..........+..+ .....|..+..++.-.|+.. -.+
T Consensus 89 K~Y~eaiKcy~nAl~~~-~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-K-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988877 2 3455666665556677778777777766665422 12233444444444444443 222
Q ss_pred HhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhC-CCCChhhHHHHH------HHHHhCCChHHHHHHhhccCCCCcc
Q 005943 161 FDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRG-FEKEDVTLTSLI------DMYLKCGEIDDGLALFNFMPERDVV 233 (668)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~ 233 (668)
.++.. +.- -.|+...|.... ....+.|..+.|.+.+..-...-..
T Consensus 166 l~ef~----------------------------~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 166 LEEFE----------------------------KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD 217 (700)
T ss_pred HHHHH----------------------------HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH
Confidence 22222 222 235555554333 3456678888888887765522211
Q ss_pred hHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHH-hC-CChhHHHHHHHHHH
Q 005943 234 SWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYV-LN-EQNEEAITLLSHIH 311 (668)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~-~~~~~a~~~~~~m~ 311 (668)
....-..-...+.+.+++++|..++..+.. ..||..-|+..+..+. +- +..+....+|....
T Consensus 218 ------------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~----rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 218 ------------KLAFEETKADLLMKLGQLEEAVKVYRRLLE----RNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred ------------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHh----hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 223344556778889999999999999976 6677666666554443 33 33333336666554
Q ss_pred hC---CCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHH----HHHHHccCC-
Q 005943 312 SS---GMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKS----ALELFHRLP- 383 (668)
Q Consensus 312 ~~---g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~- 383 (668)
+. ...|-....+.+ . ..++. +....++..+.+.|+++--.. +...|-.....+- +..+...+.
T Consensus 282 ~~y~r~e~p~Rlplsvl-~----~eel~-~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVL-N----GEELK-EIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred hcCcccccchhccHHHh-C----cchhH-HHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 42 111211111111 0 01110 445556666666666543222 2222211111110 111111111
Q ss_pred -------------CCChh--hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhccccchHhHHHHHHH
Q 005943 384 -------------KKDVV--AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQF-IISSVLKVCSCLASLRRGKQVHAF 447 (668)
Q Consensus 384 -------------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 447 (668)
.|... ++.-++..+-+.|+++.|...++..++. .|+.. .|..=.+.+...|.++.|..++++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 12223 3445678888899999999998877643 44433 344445778888999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC--Hh--------HHHHH--HHHHHhcCChHHHHHHHHHHH
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD--VV--------SWTGI--IVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------~~~~l--~~~~~~~~~~~~a~~~~~~m~ 515 (668)
..+.. .+|...-.--.....+..+.++|.++.....+.+ .. .|-.+ ..+|.+.|++..|++-|....
T Consensus 431 a~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 431 AQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88776 4555555466777788899999988877766422 11 23222 346777777777776665554
Q ss_pred HC--CC---CCCHHH----------HHHHHHHhhcCCC-------HHHHHHHHHhcccccCCC-CChhHHHH----HHHH
Q 005943 516 QS--RL---KPNEIT----------FLGVLSACRHAGL-------VEEAWTIFTSMKPEYGLE-PHLEHYYC----MVDL 568 (668)
Q Consensus 516 ~~--g~---~p~~~~----------~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~-p~~~~~~~----l~~~ 568 (668)
.. .+ +-|-.| |.-|+.-.-...+ ...|+++|=.|....... +....... .-..
T Consensus 510 k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~ 589 (700)
T KOG1156|consen 510 KHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKI 589 (700)
T ss_pred HHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHH
Confidence 32 01 222223 2223322211111 235677777776432000 11111111 1111
Q ss_pred hhhcC-ChHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 569 LGQAG-CFDDAEQLIAEM--------------PFKPDKTIWASMLKACETHNN-TKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 569 ~~~~g-~~~~A~~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..++. +..+|.+.-+.+ +..||.. -+...+.+..+ .++|..++.......+.+..+|..-.
T Consensus 590 ~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ 666 (700)
T KOG1156|consen 590 KKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSF 666 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 11111 111222221111 1234444 23333445544 56788999988889999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|.+.|.+.-+.+.++.+.....
T Consensus 667 ely~rk~k~~l~~~~~~~~~~~~~ 690 (700)
T KOG1156|consen 667 ELYYRKGKFLLALACLNNAEGIHG 690 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999988877655
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=4.2e-07 Score=77.83 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=128.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 536 (668)
..|.-.|...|++..|..-+++..+ | +..+|..+...|.+.|+.+.|.+.|++..+ +.|+. ...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 3455567777777777777776664 3 234666677777777777777777777776 34443 3556666666777
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
|.+++|...|++...+....--..+|..+.-+..+.|+++.|.+.|++. ...| ...+...+.......|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777777765333334567777777777777777777777766 2223 3445566666667777777777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 615 EQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
++.....+.+...+...+++-...||.+.+.++=..+...
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777766666667777777777777777777766665544
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=3.1e-07 Score=86.25 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=144.5
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC-cHHHHHHHHHHhccccchHh
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV-NQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 440 (668)
+.+++...|+.+.++.-+..-..|.......+...+...++.+.++.-+++.......+ +..........+...|+++.
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHH
Confidence 55667777887776665555555555555555444433344555555555544444332 33333333456677899999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-HhHHHHHHHHH----HhcCChHHHHHHHHHHH
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERD-VVSWTGIIVGC----GQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~----~~~~~~~~a~~~~~~m~ 515 (668)
|.+++... .+.......+..|.+.++++.|.+.++.|.+-+ -.+...+..++ .-.+.+.+|..+|+++.
T Consensus 121 AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 121 ALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS 194 (290)
T ss_dssp HHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 98887642 356667778999999999999999999988632 22233343333 23347999999999987
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCCh-HHHHHHHHhCC-CCCC
Q 005943 516 QSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCF-DDAEQLIAEMP-FKPD 590 (668)
Q Consensus 516 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~p~ 590 (668)
+. ..++..+.+.+..++...|++++|.+++++... ..| +..+...++-+....|+. +.+.+++..+. ..|+
T Consensus 195 ~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 195 DK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp CC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred hc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 75 578888999999999999999999999999874 345 467777788887888887 67788998883 3454
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4e-05 Score=68.34 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCC-CCchHHHHHHHHhccCChHHHHHHHHHHHH
Q 005943 72 WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEP-NGFMYSAVLKACSLSGDLDLGRLIHERITR 133 (668)
Q Consensus 72 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (668)
+++.+..+.+..++.+|++++..-.+.. | +....+.|..+|....++..|-.+++++-.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q 72 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ 72 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566666666666666665554 3 344445555555666666666666666544
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=1.3e-05 Score=72.70 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=181.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHH---HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMI---SGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKA 328 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 328 (668)
-+.+.+...|++..|+.-|... +..|+..|.++- ..|...|+..-|+.=|....+ ++||-..-
T Consensus 43 ElGk~lla~~Q~sDALt~yHaA------ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~A------ 108 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAA------VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAA------ 108 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH------HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHH------
Confidence 4555566667777777777766 444555555543 345666666666665555554 34442211
Q ss_pred HHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHH
Q 005943 329 CINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYL 408 (668)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 408 (668)
-.. -...+.+.|.+++|+.-|+.+.+.++.- +....++.+.--.++-..
T Consensus 109 RiQ------------------------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 109 RIQ------------------------------RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HHH------------------------------hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH
Confidence 111 1223567788888888777766532210 001111111111111111
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---C
Q 005943 409 LFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP---E 485 (668)
Q Consensus 409 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 485 (668)
+. ..+..+...|+...|......+.+.. +.+...+..-..+|...|++..|+.-+.... .
T Consensus 158 l~----------------~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 158 LV----------------QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HH----------------HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 11 12223344555666666666555543 5566777777778888888888766555443 3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH---HHH---------HHHhhcCCCHHHHHHHHHhcccc
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TF---LGV---------LSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~---~~l---------l~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
.+...+--+-..+.+.|+.+.++...++.++ +.||.. +| -.+ +......++|-++.+..+...+.
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4566666666677777888888777777776 456653 22 111 11234566777777777666632
Q ss_pred cCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 553 YGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 553 ~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.|. ...+..+..++...|++.+|+..-.+. .+.|| +.++..-..+|.-..+++.|+.-|+.+.+.++++.
T Consensus 299 ---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 299 ---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 333 345566677778888888888777665 45554 66777777788888888888888888888887765
Q ss_pred hhH
Q 005943 626 SKY 628 (668)
Q Consensus 626 ~~~ 628 (668)
.+-
T Consensus 376 ~~r 378 (504)
T KOG0624|consen 376 RAR 378 (504)
T ss_pred HHH
Confidence 443
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=6.4e-06 Score=74.71 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=206.7
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHH---HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHhccccc
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLI---MGCTKHGLNSLAYLLFRDMINSNQDVNQFIIS-SVLKVCSCLAS 437 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~ 437 (668)
+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+...++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 555666778888888888888887777776664 4678888888888877777654 45543221 12235678888
Q ss_pred hHhHHHHHHHHHHhCCCCc--hh------------HHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh
Q 005943 438 LRRGKQVHAFCVKRGFEKE--DI------------TLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQ 500 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 500 (668)
++.|..-|+.+.+...... .. .....+..+.-.|+...|+.....+.+ -|...|..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 9999888888876542111 11 112233445567888999998888775 477788888999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH----HHHH---------HH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH----YYCM---------VD 567 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l---------~~ 567 (668)
.|+...|+.-++...+.. .-|..++--+-..+...|+.+.++..+++.. .+.||... |..| +.
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777642 3344555566677888999999999888888 67887432 2111 11
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHH-----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKPDKT-----IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
.....++|.++++-.++. ...|... .+..+-..+...+++.+|++...++++.+|+|..++..-+.+|.--.+|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 233445666666666554 4455522 2333444456789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
|.|+.-++...+.+.
T Consensus 358 D~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 358 DDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999887665
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=9.4e-06 Score=80.83 Aligned_cols=258 Identities=11% Similarity=0.003 Sum_probs=159.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHH---HHHHhccccchHhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhc
Q 005943 395 MGCTKHGLNSLAYLLFRDMINSNQDVNQFIISS---VLKVCSCLASLRRGKQVHAFCVKRGFEKE-DITLTSLIDMYLKC 470 (668)
Q Consensus 395 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 470 (668)
..+...|++++|.+.+++..+.. +.+...+.. ........+....+.+.+.. ..+..|+ ......+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 34567789999999999887763 223333331 11122223445555555443 1122233 33444566778889
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCCHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPNE--ITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 544 (668)
|++++|...+++..+ | +...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999998764 3 456778888899999999999999998887521 1232 245567788899999999999
Q ss_pred HHHhcccccCCCCChhHH-H--HHHHHhhhcCChHHHHHH---HHhC-CCCC-CHHHHH--HHHHHHHhhCCHHHHHHHH
Q 005943 545 IFTSMKPEYGLEPHLEHY-Y--CMVDLLGQAGCFDDAEQL---IAEM-PFKP-DKTIWA--SMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~ 614 (668)
++++........+..... . .++..+...|....+.+. .... ...| ....+. ....++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999975321111222111 1 223333444433322222 1111 1101 112222 4555677889999999999
Q ss_pred HHHHhcCCC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 615 EQLLATSPE---------DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 615 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.+...... ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998773211 34455667778889999999999998887643
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.4e-05 Score=79.32 Aligned_cols=395 Identities=14% Similarity=0.101 Sum_probs=217.1
Q ss_pred CChhHHHHHHHH--HhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhh
Q 005943 67 KNIVSWTTMVTA--YTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMN 144 (668)
Q Consensus 67 ~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (668)
-|..+-..++.. |..-|+.+.|++-.+-++ +...|..+.+.|.+.+++|-|.-++..|....-.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga------- 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA------- 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-------
Confidence 477777777764 677899999988776654 3457999999999999999999998888753210
Q ss_pred HHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHh
Q 005943 145 TLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALF 224 (668)
Q Consensus 145 ~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 224 (668)
++ ++..++. |+ .+=....-.....|.+++|..+|
T Consensus 790 -------------RA-----------------------------lR~a~q~---~~-e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 790 -------------RA-----------------------------LRRAQQN---GE-EDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred -------------HH-----------------------------HHHHHhC---Cc-chhhHHHHHHHHHhhHHHHHHHH
Confidence 00 0111111 11 11122222334566677777777
Q ss_pred hccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHH
Q 005943 225 NFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304 (668)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 304 (668)
++-+.-| .|=..|-..|.+++|.++-+.-.. +. =..||..-...+-..++.+.|+
T Consensus 824 r~ckR~D--------------------LlNKlyQs~g~w~eA~eiAE~~DR----iH-Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 824 RQCKRYD--------------------LLNKLYQSQGMWSEAFEIAETKDR----IH-LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHHHHH--------------------HHHHHHHhcccHHHHHHHHhhccc----ee-hhhhHHHHHHHHHhhccHHHHH
Confidence 6554333 233445666777777666554311 11 1224444455555566667776
Q ss_pred HHHHHHHhC----------C---------CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHH
Q 005943 305 TLLSHIHSS----------G---------MCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDL 365 (668)
Q Consensus 305 ~~~~~m~~~----------g---------~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (668)
+.|++.-.. . -.-|...|.-.-.-+-..|+. +.|..++....+ |-+++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem--daAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM--DAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch--HHHHHHHHHhhh---------hhhheee
Confidence 666653110 0 001222222222222333444 444444433322 2223344
Q ss_pred HHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---------
Q 005943 366 YARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA--------- 436 (668)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--------- 436 (668)
.|-.|+.++|-++-++ ..|..+...|.+.|-..|++.+|...|.+.. +|...|+.|-..+
T Consensus 948 ~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred EeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHH
Confidence 4444555555554433 2366677788888989999999998887653 4445555443332
Q ss_pred ------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--------------CCHhHHHHHHH
Q 005943 437 ------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--------------RDVVSWTGIIV 496 (668)
Q Consensus 437 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~l~~ 496 (668)
+.-.|-++|++. |. -....+..|-+.|.+.+|+++--+-.+ .|+...+.-..
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 222222333321 11 122334556777777777665332221 36667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhc
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQA 572 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 572 (668)
-++.+.++++|..++-..++ |.-.+..| +..+..-..++-+.|.....-.|+ ......+.+.+.++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 78888889998888766554 23333333 333444444444555433222333 34566777888888
Q ss_pred CChHHHHHHHHhCC
Q 005943 573 GCFDDAEQLIAEMP 586 (668)
Q Consensus 573 g~~~~A~~~~~~~~ 586 (668)
|.+..|.+-|..++
T Consensus 1159 G~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAG 1172 (1416)
T ss_pred cchHHHHHHHhhhh
Confidence 88888777776664
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.7e-05 Score=74.48 Aligned_cols=237 Identities=11% Similarity=0.015 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCC------chhHHHHH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEK------EDITLTSL 463 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 463 (668)
...+..+..+..++..|++.+....+.. -+..-++..-.++...|........-....+.|-.. -...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666667777888888887776654 333344445556666666666555544444433111 01112223
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEA 542 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 542 (668)
..+|.+.++++.|+..|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 44666667777777777764421100 1112233445555555544443 344432 122235567788999999
Q ss_pred HHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 543 WTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 543 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
...|.++... .| |...|..-.-+|.+.|.+..|++=-+.. ...| ....|.--..++....+++.|.+.|++.++
T Consensus 378 v~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998853 45 6788888999999999998888766655 3344 344455555556667789999999999999
Q ss_pred cCCCCchhHHHHHHHHHhc
Q 005943 620 TSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 620 ~~p~~~~~~~~l~~~~~~~ 638 (668)
.+|.+..+...+.+.+...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999888888877777653
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00046 Score=70.41 Aligned_cols=239 Identities=12% Similarity=0.057 Sum_probs=122.7
Q ss_pred HHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcC--------CCCCCCchHHHHHHHHhccC
Q 005943 48 YADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYG--------SVEPNGFMYSAVLKACSLSG 119 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~p~~~~~~~ll~~~~~~~ 119 (668)
|..-|+.+.|.+-.+.++ .-..|..|.+.|.+.++.+-|.-.+..|.... ...|+ .+-.-+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 445566666655554442 23446666666666666666655555554311 11122 22223333345667
Q ss_pred ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCC
Q 005943 120 DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEK 199 (668)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (668)
-+++|+.++.+-++..+ |=..|-..|.+++++ +.... ..--.
T Consensus 815 MlEeA~~lYr~ckR~DL---------lNKlyQs~g~w~eA~-eiAE~----------------------------~DRiH 856 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDL---------LNKLYQSQGMWSEAF-EIAET----------------------------KDRIH 856 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHhcccHHHHH-HHHhh----------------------------cccee
Confidence 77777777776665431 222333344444222 00000 00011
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhc------c--cCchhhHHHHHHHHHcCCCHHHHHHHHH
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGC------F--ECSCFTLSALVDMYSNCNVLCEARKLFD 271 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (668)
=..||..-...+-..++++.|++.|++...+....+..+..-. . ..|...|.=....+-..|+.+.|+.++.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 2345666666666778888888888776633222222111110 0 0245555555555566788888888877
Q ss_pred HhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Q 005943 272 QYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGL 346 (668)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 346 (668)
..+. |-.+++..|-.|+.++|-.+-++- -|......+.+.|-..|++ ..|..+|..
T Consensus 937 ~A~D-----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v--~~Av~FfTr 992 (1416)
T KOG3617|consen 937 SAKD-----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV--VKAVKFFTR 992 (1416)
T ss_pred Hhhh-----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 7643 455556666666666666665442 2344444555555555555 555555543
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=2e-07 Score=90.46 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=157.0
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAY 510 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 510 (668)
+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+ | |....-.|...|...|.-..|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555443 44566666676667777777777777776654 3 556677777778888877788888
Q ss_pred HHHHHHCCCCCCHHHHHHHH-----------HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 511 FQEMIQSRLKPNEITFLGVL-----------SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 511 ~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
++.-+... |.. ..+. ..+..........++|-++....+..+|..+...|.-.|.-.|.+++|.
T Consensus 376 L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77765532 111 0000 1112222334455566666555466688899999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 580 QLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 580 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+.|+.+ ..+| |...||-|...+....+.++|+..|.+++++.|.-..+...|+-.|...|.|++|.+.|=.....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999988 5666 67789999999999999999999999999999999999999999999999999999998776543
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.7e-08 Score=59.42 Aligned_cols=34 Identities=44% Similarity=0.720 Sum_probs=32.3
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC
Q 005943 195 RGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP 228 (668)
Q Consensus 195 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 228 (668)
.|+.||..||++||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999985
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=6.2e-07 Score=83.16 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-V---VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI----TF 526 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~ 526 (668)
...+..+...+.+.|+++.|...|+++.. |+ . ..+..+..++...|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 34444555556666666666666665542 21 1 24445555666666666666666666553 23211 23
Q ss_pred HHHHHHhhcC--------CCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 005943 527 LGVLSACRHA--------GLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASM 597 (668)
Q Consensus 527 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 597 (668)
..+..++... |+++.|.+.++.+... .|+. ..+..+..... .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHHHHHH
Confidence 3333333332 4555555555555532 3332 11111111100 0000 0 0011244
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
...+.+.|+++.|...++++.+..|++ +..+..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 556788999999999999999987765 4789999999999999999999999887653
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=4.7e-07 Score=75.74 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=50.4
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~ 605 (668)
+..++...|++++|...|+... ...| +...+..+..++.+.|++++|...|+.. ... .+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444455555555555555544 2233 3444455555555555555555555544 222 23444444444555555
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
++++|+..|+++++..|+++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555555444443
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.1e-06 Score=90.41 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPER--------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
+...|-..|......++.++|+++.++.... -...|.++++.-...|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3444555555555666666666666655431 1234555555555555556666666666652 22233456
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKACET 603 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~ 603 (668)
.|...|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 666666666666666666666665444 44556666666666666666666666554 2222 23333444444556
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 66666666666666666666666666666666666666666666666666555
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=4.5e-06 Score=73.92 Aligned_cols=119 Identities=8% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhhCC--HHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKAC-ETHNN--TKLV 610 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 610 (668)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555442 12234566666666666666666666666655 2333 444455555542 44454 3666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++++++++.+|+++.++..++..+.+.|++++|+..++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666666666666666666666666666666666655544
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=0.00051 Score=71.77 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=119.0
Q ss_pred CChhHHHHhhhhcCCCChh---HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHH
Q 005943 52 TSLNDAHKLFDEMARKNIV---SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIH 128 (668)
Q Consensus 52 g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 128 (668)
.+...|...|=+..+.|+. .|..|...|+...+...|...|+...+.+ . -+..........+++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-a-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-A-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4477777777666665543 69999999998889999999999999987 2 46778899999999999999999994
Q ss_pred HHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHH
Q 005943 129 ERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLI 208 (668)
Q Consensus 129 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 208 (668)
-...+.... -...+| |-..-
T Consensus 550 l~~~qka~a-~~~k~n-----------------------------------------------------------W~~rG 569 (1238)
T KOG1127|consen 550 LRAAQKAPA-FACKEN-----------------------------------------------------------WVQRG 569 (1238)
T ss_pred HHHhhhchH-HHHHhh-----------------------------------------------------------hhhcc
Confidence 333332110 000011 11112
Q ss_pred HHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHH
Q 005943 209 DMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWN 288 (668)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 288 (668)
-.|.+.++..+|+.-|+...+.++. |...|..++.+|.+.|.+..|.++|.+... ..|+. .|.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk------------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~----LrP~s-~y~ 632 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK------------DYNLWLGLGEAYPESGRYSHALKVFTKASL----LRPLS-KYG 632 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch------------hHHHHHHHHHHHHhcCceehHHHhhhhhHh----cCcHh-HHH
Confidence 2345666777777777777655554 555677777777777777777777766643 33432 122
Q ss_pred HH--HHHHHhCCChhHHHHHHHHHHh
Q 005943 289 SM--ISGYVLNEQNEEAITLLSHIHS 312 (668)
Q Consensus 289 ~l--i~~~~~~~~~~~a~~~~~~m~~ 312 (668)
.. ....+..|.+.++++.+.....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 21 1224556777777777766543
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=1.6e-06 Score=72.53 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=92.5
Q ss_pred HHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 544 TIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.++++.. ...|+. +..+...+...|++++|...|+.. ...| +...|..+..++.+.|++++|...|+++.+++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555 335553 556788889999999999999987 3344 77788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|+++..+..++.++...|++++|+..++...+..+.++
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999988777443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=7.2e-05 Score=84.78 Aligned_cols=295 Identities=12% Similarity=0.018 Sum_probs=169.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC----CC---h---h--hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH----HH
Q 005943 361 NLIDLYARLGNVKSALELFHRLPK----KD---V---V--AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ----FI 424 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~----~~---~---~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~ 424 (668)
.....+...|+++++...+..... .+ . . ....+...+...|+++.|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344455566777777776654321 11 1 1 1112223455678888888888776653211121 22
Q ss_pred HHHHHHHhccccchHhHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CH
Q 005943 425 ISSVLKVCSCLASLRRGKQVHAFCVKR----GFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE-------R----DV 488 (668)
Q Consensus 425 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~ 488 (668)
...+...+...|+++.|...+...... |.. .....+..+...+...|+++.|...+++... + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 334444556678888888877766543 111 1123344556667778888888777665432 1 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH--
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-- 562 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-- 562 (668)
..+..+...+...|++++|...+++.... ...+. ...+..+.......|++++|...+++...-.........+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23344455566678888888888776553 11122 2234445566777888888888777764311111110101
Q ss_pred ---HHHHHHhhhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchh
Q 005943 563 ---YCMVDLLGQAGCFDDAEQLIAEMPFK--PDK----TIWASMLKACETHNNTKLVSIIAEQLLATS------PEDPSK 627 (668)
Q Consensus 563 ---~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~ 627 (668)
...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.++|...++++.... +....+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11223445578888888887665311 111 113345556777888888888888877632 112345
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 628 YVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+..++.++...|+.++|...+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677888888888888888888877643
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=0.00015 Score=72.16 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCcHHHHH-HHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH---
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQ-DVNQFIIS-SVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS--- 462 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 462 (668)
..|..+...+...|+.+.+...+........ .++..... .....+...|+++++..+++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3455556666667777776666666544322 23332222 22234466789999999999888763 444444432
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
........+..+.+.+.+..... |+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 12222234566666666655322 22 3344556678889999999999999999963 33456778888899999999
Q ss_pred HHHHHHHHhcccccCCCCCh--hHHHHHHHHhhhcCChHHHHHHHHhCC-CCC--C-HHHH-H--HHHHHHHhhCCHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHL--EHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP--D-KTIW-A--SMLKACETHNNTKLV 610 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~~~~~~a 610 (668)
++|...+++........|+. ..|..+...+...|++++|..++++.. ..| . .... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999987531112332 346678899999999999999999862 223 1 1111 1 222223344443333
Q ss_pred HHHHHHHHh----cCCC--CchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 611 SIIAEQLLA----TSPE--DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 611 ~~~~~~~~~----~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.+. +.+.. ..|. ....-...+.++...|+.++|...++.+....
T Consensus 245 ~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 22221 1122 12223367778899999999999999987643
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=7.7e-08 Score=56.67 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=27.9
Q ss_pred hcCCCCccchHHHHHHHHcCCChhHHHHhhhhcC
Q 005943 32 YGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMA 65 (668)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 65 (668)
.|+.||..+|+.||..|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=4.2e-06 Score=83.73 Aligned_cols=217 Identities=17% Similarity=0.196 Sum_probs=152.6
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005943 351 GYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLK 430 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 430 (668)
+++|-...-..+...+.+.|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..+ -+|++..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566666677888889999999999998875 4677888899999999999998888776 4677888888877
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcCChHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 507 (668)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777777777776654322 1122222233467777777777755432 244666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 508 IAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
...|..-.. +.||.. .|+.+-.+|.+.++..+|...+++..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777666 466543 6777777777777777777777777632 3 344556666677777777777777777766
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=1.1e-05 Score=84.91 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
+..+..|.....+.|++++|+.+++...+ +.|+.. ....+..++.+.+.+++|...+++... ..|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 44444455555555555555555555555 344432 334444455555555555555555542 2332 3344444
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
..++.+.|++++|.++|+++- ..| +...+..+..++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 455555555555555555541 122 23444444444555555555555555555543
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=1.5e-05 Score=70.17 Aligned_cols=154 Identities=13% Similarity=0.102 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ 571 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 571 (668)
..+-..+...|+-+....+....... -.-+.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45566677777777777776664432 123334455577778888888888888888873 555678888888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
.|++++|..-+.+. .+.| +....+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888777666 3333 55567778878888888888888888888888878888888888888888888887764
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00016 Score=70.33 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=73.0
Q ss_pred HhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC--CC-hhHHHHHHHHHhcCCChhhH
Q 005943 12 HCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR--KN-IVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a 88 (668)
+....|+++.|.+.|...+... +++-..|..-..+|+..|++.+|++=-.+-.+ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 3456788899999988888766 44677788888888888888888775554443 22 33688888888888899999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHH
Q 005943 89 IRLYNHMLEYGSVEPNGFMYSAVLKAC 115 (668)
Q Consensus 89 ~~~~~~m~~~~~~~p~~~~~~~ll~~~ 115 (668)
+..|.+-++.. + .+...++.+..+.
T Consensus 90 ~~ay~~GL~~d-~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKD-P-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcC-C-chHHHHHhHHHhh
Confidence 98888888776 2 2334555555555
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=6.3e-06 Score=82.51 Aligned_cols=210 Identities=10% Similarity=0.003 Sum_probs=140.5
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--CCCHhHHHHHHHHHHhcCChH
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP--ERDVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 505 (668)
+...+...|-...|..+++++ ..+..++.+|+..|+..+|..+..+-. +|++..|..+........-++
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 334444555555566665543 345556777777777777766665444 356666766666666666667
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|.++.+..... .-..+.......++++++.+.|+.-. .+.| -..+|-.+.-+..+.+++..|.+.|..
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 777666554332 11112222334677777777777665 3334 466777777777888888888887776
Q ss_pred C-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 585 M-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 585 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. ...| +...||.+-.+|.+.++-.+|...++++.+-+-.+..+|.+..-+....|.+++|.+.+.++.+...
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 5 4455 4557888888888888888888888888887777777888888888888888888888888876544
No 116
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=5.5e-05 Score=72.20 Aligned_cols=187 Identities=10% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 465 DMYLKCG-EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR--AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 465 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
.++...| .+++++..++++.+ .+...|+.....+.+.|+ .++++.+++++.+.. +-|..+|.....++...|+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhh
Confidence 3334444 45667777666553 233445544434444454 256777887887742 2345677777777888888
Q ss_pred HHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh----
Q 005943 539 VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA---GCF----DDAEQLIAEM-PFKP-DKTIWASMLKACETH---- 604 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 604 (668)
++++++.++++.+. .| +...|+....++.+. |.. ++++++..++ ...| |...|+-+...+...
T Consensus 158 ~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 88888888888743 33 456666665555444 222 4566666444 4445 566777777777663
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC------------------ChhhHHHHHHHHHhcC
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG------------------MWDSLSKVRKAGKKLG 655 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~~~~ 655 (668)
+...+|...+.++.+.+|.++.++..|+++|.+.. ..++|.++++.+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence 34466888889988889999999999999998642 3477888888885433
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00043 Score=78.55 Aligned_cols=364 Identities=9% Similarity=-0.045 Sum_probs=216.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCee--eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVA--LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKAC 329 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (668)
.....+...|++.+|......... ++.. ............|+++.+..+++.+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGD------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCC------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 344556667777777766555421 1110 01111223445677777767666542211111222222333444
Q ss_pred HhccccchHHHHHHHHHHHHhCC------CCc--cchHHHHHHHHHhcCChHHHHHHHccCCC----CCh----hhHHHH
Q 005943 330 INLLNFNSRFALQVHGLIVTSGY------ELD--YIVGSNLIDLYARLGNVKSALELFHRLPK----KDV----VAWSGL 393 (668)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l 393 (668)
...++. +.+..........-- .+. ......+...+...|+++.|...+++... .+. ...+.+
T Consensus 420 ~~~g~~--~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 420 QSQHRY--SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHCCCH--HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 556666 777777766544311 111 11122233455678999999888876532 221 234556
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhccccchHhHHHHHHHHHHh----CCCC---chhHHH
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQ---DV--NQFIISSVLKVCSCLASLRRGKQVHAFCVKR----GFEK---EDITLT 461 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~ 461 (668)
...+...|+++.|...+++...... .+ ...++..+...+...|+++.|...+++.... +... ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 6677789999999999988764321 11 1234455566778899999999988776543 2211 123344
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCH--HHH--H
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE------R--DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR--LKPNE--ITF--L 527 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~--~~~--~ 527 (668)
.+...+...|++++|...+.+... + ....+..+...+...|+++.|...+++..... ..... ... .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 556667778999999888887642 1 12344456667888999999999998876521 11111 011 1
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCC-HHHHHH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEMP-------FKPD-KTIWAS 596 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ 596 (668)
..+..+...|+.+.|..++...... ..... ...+..+..++...|++++|...+++.- ..++ ..+...
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 1223445589999999998776532 11111 1124567788899999999999988761 1121 234556
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+..++.+.|+.++|...+.++.+.....
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 6677889999999999999999965443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=2.1e-05 Score=69.76 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=116.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
+-.|...|+++.+....+.+..|. ..+...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655543332221 01223567788888888877753 456678999999999999999999
Q ss_pred HHHHhcccccCCCC-ChhHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEP-HLEHYYCMVDLL-GQAGC--FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 544 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
..|++.. .+.| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..|+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988 4456 578888888864 67777 59999999988 4445 6678888888899999999999999999
Q ss_pred HhcCCCCchhHH
Q 005943 618 LATSPEDPSKYV 629 (668)
Q Consensus 618 ~~~~p~~~~~~~ 629 (668)
++..|++..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999888765543
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0027 Score=62.02 Aligned_cols=174 Identities=9% Similarity=0.093 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhc
Q 005943 403 NSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEK-EDITLTSLIDMYLKCGEIDDGLALFK 481 (668)
Q Consensus 403 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 481 (668)
.+.....+.++...-..--..+|...++...+..-+..|..+|.++++.+..+ .+.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555666666554333334567777777778888888999999988887766 77788888887764 67888888888
Q ss_pred cCCC--CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccC--
Q 005943 482 FMPE--RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-- 554 (668)
Q Consensus 482 ~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 554 (668)
--.+ +|.. --...+.-+...++-..+..+|++....++.|+. ..|..++.--+.-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5443 4433 3445667777888888899999999888777765 4788899888889999998888777765433
Q ss_pred CCCChhHHHHHHHHhhhcCChHH
Q 005943 555 LEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 555 ~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
..+....-..+++-|.-.+...-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 33333444555666655554443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=6.2e-05 Score=66.38 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=88.7
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
+-..+.-.|+-+....+...... .|.......+....+.|++..|+..+++.... -++|..+|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 34444455555555555544332 23334445666666677777777777766654 244555666666677777777
Q ss_pred HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
+.|..-|.+.. .+.| +...++.|.-.|.-.|+++.|..++.... ..+ |...-..+..+....|+++.|+.+...
T Consensus 151 ~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77776666665 3344 35556666666666677777777666652 122 555556666666666777666665544
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.004 Score=60.92 Aligned_cols=398 Identities=12% Similarity=0.129 Sum_probs=226.3
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
|...|+.|++-+... .++++.+.++++.. .-| ....|..-|..-....+++.+..+|.+....-+..|.. ..
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~----~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW--~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN----VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW--KL 91 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH--HH
Confidence 788999999988877 99999999999965 555 56678888999999999999999999988765554443 33
Q ss_pred HHHHHHhc-cccch---HHHHHHHHHHHHhCCCC-ccchHHHHHHH---------HHhcCChHHHHHHHccCCCC-----
Q 005943 325 ALKACINL-LNFNS---RFALQVHGLIVTSGYEL-DYIVGSNLIDL---------YARLGNVKSALELFHRLPKK----- 385 (668)
Q Consensus 325 ll~~~~~~-~~~~~---~~a~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~----- 385 (668)
-|.--.+. +.... ..+...--.+.+.|+.+ +..+|+..+.. |....+++...++++++..-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 33322221 22200 11222222344556655 33445554433 33444677788888887642
Q ss_pred -----ChhhHHHHHHH-------HHhcCCcHHHHHHHHHHHH--cCCCCcHHH---------------HHHHHHHhcccc
Q 005943 386 -----DVVAWSGLIMG-------CTKHGLNSLAYLLFRDMIN--SNQDVNQFI---------------ISSVLKVCSCLA 436 (668)
Q Consensus 386 -----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~~~~~~---------------~~~ll~~~~~~~ 436 (668)
|-..|..=|.. --+...+..|.++++++.. .|..-...+ |..+|. +.+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcC
Confidence 11222211111 1123345567777777653 232111111 212221 00000
Q ss_pred c---------hHhHHHHHHH-HHHhCCCCchhHHH-----HHHHHHHhcCCh-------HHHHHHhccCCC----CCHhH
Q 005943 437 S---------LRRGKQVHAF-CVKRGFEKEDITLT-----SLIDMYLKCGEI-------DDGLALFKFMPE----RDVVS 490 (668)
Q Consensus 437 ~---------~~~a~~~~~~-~~~~~~~~~~~~~~-----~l~~~~~~~~~~-------~~A~~~~~~~~~----~~~~~ 490 (668)
- .....-++++ +.-.+..|++.... ..-+.+.+.|+. +++..+++.... .+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111111221 11223333332211 111223333333 333444443332 12222
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHH
Q 005943 491 WTGIIVGCG---QNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCM 565 (668)
Q Consensus 491 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 565 (668)
|..+..--- .-...+.....++++...- +.| ..+|..++....+...++.|..+|.++.++ +..+ ++.+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHH
Confidence 222221111 1113556666676666542 223 236777778778888888999999999876 6666 67788888
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCC-CchhHHHHHHHHHhcCC
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKPDKT-IWASMLKACETHNNTKLVSIIAEQLLAT--SPE-DPSKYVMLSNVYATLGM 640 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~ 640 (668)
+..|+. ++.+-|.++|+-- ..-+|.. --...+.-+..-++-..+..+|++++.. .|+ ...+|...+..-..-|+
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 887765 7778888888754 3234444 3456666677888888899999998885 222 34578888888888899
Q ss_pred hhhHHHHHHHHHhc
Q 005943 641 WDSLSKVRKAGKKL 654 (668)
Q Consensus 641 ~~~a~~~~~~~~~~ 654 (668)
.+-+.++-+++...
T Consensus 488 L~si~~lekR~~~a 501 (656)
T KOG1914|consen 488 LNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888877654
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=1e-05 Score=67.50 Aligned_cols=96 Identities=20% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+..|.++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444555555555555555544 2122 3344444444555555555555555555555555555555555555555
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 99 GEPESALKALDLAIEICG 116 (135)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 555555555555554443
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00016 Score=63.77 Aligned_cols=245 Identities=11% Similarity=-0.002 Sum_probs=152.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
++-+.-.|++..++..-....... -+...-..+-++|...|...... ..+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 455566677777766554443221 23333333444555555433221 11111 1133333333333333334443
Q ss_pred HHHH-HHhccCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 474 DDGL-ALFKFMPER----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 474 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
++-. ++.+.+..+ +......-...|+..|++++|++..+... +......=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 222233322 22233333456889999999999887622 223333334456678889999999999
Q ss_pred cccccCCCCChhHHHHHHHHhh----hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 549 MKPEYGLEPHLEHYYCMVDLLG----QAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
|.+ + -+..+.+.|..++. ..++..+|.-+|+++. ..|+..+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 983 2 34455565655554 4467899999999993 678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChhhHH-HHHHHHHhc
Q 005943 623 EDPSKYVMLSNVYATLGMWDSLS-KVRKAGKKL 654 (668)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 654 (668)
.++.++..++.+-...|.-.++. +.+..++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998888888765554 445444443
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=2.4e-05 Score=72.58 Aligned_cols=182 Identities=14% Similarity=0.057 Sum_probs=124.3
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-Hh---
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VV--- 489 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~--- 489 (668)
......+......+...|+++.|...++.+.... +.+ ...+..+..++.+.|++++|...++++.+ |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4455677778888899999999999999987764 222 24567788999999999999999998864 32 21
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh
Q 005943 490 SWTGIIVGCGQN--------GRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 560 (668)
.+..+..++... |++++|.+.++++... .|+.. .+..+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------H
Confidence 455555566554 7889999999999885 55543 2222211100 000 000 1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PF---KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
....+...|.+.|++++|...++.. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1225667788888888888888776 22 22 345777888888888888888888888776655
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00073 Score=59.78 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=94.1
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh----cCCCH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR----HAGLV 539 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~ 539 (668)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+- -+..|.+.|..++. -.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 345667777777777766622 2222222334455666777777777777763 24455555555543 23457
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhC-CHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHN-NTKLVSIIAEQ 616 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 616 (668)
..|.-+|++|.. ...|+..+.+-...+....|++++|..+++.. ....++.+...++..-...| +.+-..+....
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 777778888763 46777777777777777778888888877776 23345555544444433344 44444566666
Q ss_pred HHhcCCCCc
Q 005943 617 LLATSPEDP 625 (668)
Q Consensus 617 ~~~~~p~~~ 625 (668)
+....|..+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666666654
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.00018 Score=70.65 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=164.3
Q ss_pred HHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChH
Q 005943 46 SMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLD 122 (668)
Q Consensus 46 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 122 (668)
.-+.+.|++.+|.-.||-.... ++..|..|.......++-..|+..+.+..+.. + -+....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-P-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHhhhhhHH
Confidence 3456788899999999887553 44578888888888888889999999999877 2 34566777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCchHhhHHHhhhhhc-------CChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHh
Q 005943 123 LGRLIHERITREKLEYDTVLMNTLLDMYVKC-------GSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKR 195 (668)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (668)
.|..+++..+...++- ..+..+ ... +-.+...+..+. ..+++.....
T Consensus 371 ~Al~~L~~Wi~~~p~y-----~~l~~a-~~~~~~~~~~s~~~~~~l~~i~--------------------~~fLeaa~~~ 424 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-----VHLVSA-GENEDFENTKSFLDSSHLAHIQ--------------------ELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHhCccc-----hhcccc-CccccccCCcCCCCHHHHHHHH--------------------HHHHHHHHhC
Confidence 9999998887654320 000000 000 001112222222 2455555667
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 196 GFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 196 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
+..+|...+..|--.|--.|++++|...|+.....++. |...||-|.-.++...+-++|+..+.+..+
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------------DYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 76788888999999999999999999999998844443 788999999999999999999999999988
Q ss_pred hhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 005943 276 WAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIH 311 (668)
Q Consensus 276 ~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 311 (668)
.+|+ +.+...|.-+|...|.+++|...|-..+
T Consensus 493 ----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 493 ----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7786 5677778888999999999999887654
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.26 E-value=0.00014 Score=78.46 Aligned_cols=225 Identities=10% Similarity=0.116 Sum_probs=167.1
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCChHHHHHHhccCCC-CC-HhHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKR-GFEK---EDITLTSLIDMYLKCGEIDDGLALFKFMPE-RD-VVSWTG 493 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~ 493 (668)
-+...|...|......++.++|..+.++.... ++.- -...|.++++.-..-|.-+...++|++..+ -| ...|..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 34456667777778888888888888776643 2211 234566777666666777888888988876 23 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLG 570 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 570 (668)
|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+... .-|. .....-.+..-.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHh
Confidence 999999999999999999999987 344556788899999999999999999999884 3443 555666677778
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHhcCChhhHH
Q 005943 571 QAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS--PEDPS-KYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~ 645 (668)
+.|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|+++..+. |.... .|......-.+.|+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999999987 223356789999999999999999999999999844 55444 3445555445557755444
Q ss_pred HHH
Q 005943 646 KVR 648 (668)
Q Consensus 646 ~~~ 648 (668)
.+-
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=1.9e-05 Score=76.74 Aligned_cols=122 Identities=15% Similarity=0.155 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 603 (668)
...++..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666677788888899999888854 354 4455778888888888888888877 3333 55566666667889
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.++++.|..+.+++.+..|.+..+|..|+.+|.+.|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998774
No 129
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=0.0001 Score=70.29 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=139.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNG-RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
.+-..+...++.++|+.++.++.+ | +...|+....++...| ++++++..++++.+.. +-+...|+.....+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 333445556788888888888775 3 3445655555666666 6899999999999853 334446766655566666
Q ss_pred CH--HHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhh---CC---
Q 005943 538 LV--EEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETH---NN--- 606 (668)
Q Consensus 538 ~~--~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~---~~--- 606 (668)
.. +++..+++++. ...| +.+.|.....++...|+++++++.++++ . ...|...|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 53 67888888887 3455 6889999999999999999999999998 3 234667787776665543 22
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 005943 607 -TKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 607 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 656 (668)
.+....+..+++..+|++.++|..+..++.. .++..+|.+...+..+.++
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 3567888889999999999999999999988 3556778888877665444
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00012 Score=70.40 Aligned_cols=136 Identities=15% Similarity=0.094 Sum_probs=68.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHH
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 577 (668)
...|+++.|+..++.+... .+-|..........+.+.++.++|.+.++++. ...|+ ....-.+.++|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChHH
Confidence 3445555555555555543 12223333444445555555555555555555 23444 3344455555555555555
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 578 AEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 578 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
|..+++.. ..+-|+..|..|..+|...|+..++..... ..|.-.|++++|+..+....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 55555554 222344555555555555555554433322 23444555666666665555543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00021 Score=68.90 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
..|.+++|+..++.+.+ ..+-|...+....+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 44555555555555442 11223344444445555555555555555544 23333 3333444444555555555555
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 613 IAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 613 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
++++....+|+++..|..|+.+|...|+..+|....-+
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555555555555555555555555555544433
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=2e-05 Score=64.58 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+....-.+...+...|++++|..+|+-+ ...| +..-|..|...+...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3555666777788999999999999987 3444 5667788888899999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 005943 636 ATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~ 655 (668)
...|+.+.|++.|+......
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999877653
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0002 Score=62.73 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred ccchHhHHHHHHHHHHh---C-CCCchh-HHHHHHHHHHhcCChHHHHHHhccCCC--CCHh-HHHHHHHHHHhcCChHH
Q 005943 435 LASLRRGKQVHAFCVKR---G-FEKEDI-TLTSLIDMYLKCGEIDDGLALFKFMPE--RDVV-SWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~ 506 (668)
..+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++.+.+ |+.. .-..-..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34566666666655432 2 233332 233444444455566666555555442 2111 00001111223455666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-
Q 005943 507 AIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM- 585 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 585 (668)
|+++++.+.+.. +.|..++---+-..-..|+.-+|++-+..... .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666655543 22333444333344444554555555555442 44455566666666666666666666655555
Q ss_pred CCCC-CHHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCCchh
Q 005943 586 PFKP-DKTIWASMLKACET---HNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 586 ~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
-..| +...+..+...+.- ..+.+.+.++|.+++++.|.+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 2233 23333334333221 224555556666666665544333
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00035 Score=74.63 Aligned_cols=237 Identities=11% Similarity=0.101 Sum_probs=148.1
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV 431 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 431 (668)
+...+..|+..+...+++++|.++.+...+. ....|-.+...+.+.++...+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3455666777887888888888887755432 223343444455566665544433 22333
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
.....++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+|+++.+ .|+...|.+.-.|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 334444444444445554433 3344666777888888888888888887764 3566777777777777 888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPF 587 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 587 (668)
+++.+.... +...+++..+.++|+++.. ..|+ ...+..+.+..... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------hcc
Confidence 877776653 4555677777777777773 2333 33333222222111 112
Q ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 588 KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
..-..++..+..-|...++++++..+++.+++.+|.|..+...++..|. +.|..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 2334455556666777888999999999999999999888888888777 55555
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00019 Score=62.77 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=144.0
Q ss_pred cCChHHHHHHhccCCC--------CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCH
Q 005943 470 CGEIDDGLALFKFMPE--------RDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLV 539 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~ 539 (668)
..+.++..+++.++.. ++.. .|..++-+....|+.+.|...++.+... + |... .-..-..-+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4678899988887753 3333 4556666777889999999999999886 3 5443 222222235568999
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
++|.++++.+..+ . +.|..++---+-.....|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999965 2 335777777777778888888888877766 46679999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhcC---ChhhHHHHHHHHHhcCC
Q 005943 618 LATSPEDPSKYVMLSNVYATLG---MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 618 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 656 (668)
+=..|-++..+..++.++.-.| +++-|++++.+..+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999877665 67778888888877655
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00043 Score=73.30 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=102.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 005943 452 GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFL 527 (668)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 527 (668)
..+.+...+..|.....+.|.+++|..+++...+ |+ ...+..+...+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3455677777788888888888888888887764 54 446666777888888888888888888874 55544 556
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASML 598 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 598 (668)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666677888888888888888874 22223677778888888888888888888877 2345555554444
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.019 Score=59.97 Aligned_cols=134 Identities=9% Similarity=0.104 Sum_probs=101.7
Q ss_pred HhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHH--HcCCChhHHHHhhhhcCC---CChhHHHHHHHHHhcCCChh
Q 005943 12 HCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMY--ADFTSLNDAHKLFDEMAR---KNIVSWTTMVTAYTSNKRPN 86 (668)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 86 (668)
-....++++.|.+-.+++.+.. |+. .|..++.++ .+.|+.++|..+++.... .|..+...+-..|...++.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3445678999999999999864 443 455555554 489999999999988743 37778999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhh
Q 005943 87 WAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVK 152 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 152 (668)
+|..+|++..... |+..-...+..++++.+++.+-.++--++-+. .+-....+-++++....
T Consensus 95 ~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 95 EAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 9999999999877 88777888889999998888776666555553 33345555566665444
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.00011 Score=61.24 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 510 YFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 510 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
.+++..+ ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554 34543 34566677788889999999999888742 2336778888889999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 588 KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 588 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.| +...+..+...+...|+++.|...++++.+..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 34 566777778888899999999999999999999876543
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=1.2e-05 Score=56.69 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+...+...|++++|...|+++++..|.++..+..++.++.+.|++++|..+++++.+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4556788999999999999999999999999999999999999999999999999877663
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=8.7e-05 Score=72.25 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
....++..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++.... .+-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34556677777888999999999988766666677888888888889999999988864 23345566666677889999
Q ss_pred HHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 005943 539 VEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP 589 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 589 (668)
++.|+.+.+++. ...|+ ..+|..|+.+|.+.|+++.|+-.++.++..|
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999998 55775 6799999999999999999999999886443
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=8.1e-05 Score=60.37 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLS 632 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 632 (668)
++..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++.+.|+++.|...++.+....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555556666666665555 11222 2234445555666666666666666666655553 34555666
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 666666666666666666665544
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.1e-05 Score=48.39 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=31.1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005943 285 ALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID 318 (668)
Q Consensus 285 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 318 (668)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.00 E-value=7e-05 Score=57.83 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
.+..+...+...|++++|...++.+ ...| +...+..+...+...++++.|...++++.+..|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556677788888999999888876 3334 3456777777788889999999999999999998888899999999999
Q ss_pred CChhhHHHHHHHHHhcC
Q 005943 639 GMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~ 655 (668)
|++++|...++...+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999988876543
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=0.00046 Score=73.79 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=96.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA 572 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 572 (668)
++.......++.-+..+++.|.+. .-+...+..+..+|.+.|+.++|..+|+++.+ ..| |..+.+.+...|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh
Confidence 344444445554455555555552 33445677777788888888888888888873 345 577778888888777
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH--------------------HHHH
Q 005943 573 GCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY--------------------VMLS 632 (668)
Q Consensus 573 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~--------------------~~l~ 632 (668)
++++|.+++.++- ..+...+++..+.++|+++...+|++...+ ..+-
T Consensus 164 -dL~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 164 -DKEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred -hHHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 8888887776551 114455577777777777777777664443 3333
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|...++|++++.+++.+.+...
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCC
Confidence 556677899999999999988766
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=2.6e-05 Score=55.80 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-ChhhHHHHHHHHHhcC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG-MWDSLSKVRKAGKKLG 655 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 655 (668)
+..+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888999999999999999999999999999999999999999999 7999999999887654
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=48.10 Aligned_cols=33 Identities=30% Similarity=0.688 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN 522 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 522 (668)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.4e-05 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.619 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.02 Score=54.73 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+-.. +-++..|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33344445556666666665555556666666666666666666555443321 112355555666666666666
Q ss_pred HHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 541 EAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|..++.++. +..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6655555422 13334555556666555554333
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00022 Score=59.98 Aligned_cols=52 Identities=10% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
...+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|+..|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33344455555555554331 12222334444555555555555555555543
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=1.2e-05 Score=60.12 Aligned_cols=78 Identities=13% Similarity=0.280 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKP---DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46778888888777 2223 444555677788888888888888888 666777667777778888888999998888
Q ss_pred HHH
Q 005943 648 RKA 650 (668)
Q Consensus 648 ~~~ 650 (668)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.7e-05 Score=47.25 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=18.4
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005943 106 FMYSAVLKACSLSGDLDLGRLIHERITREKLEY 138 (668)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 138 (668)
.+|+.++.+|++.|+++.|.++++.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.0007 Score=56.92 Aligned_cols=124 Identities=13% Similarity=0.118 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCM 565 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 565 (668)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44455554 3677777777777777752 222 123344556677788888888888888754 32222 2234456
Q ss_pred HHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFK-PDKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
..++...|++++|+..++..... .....+......+.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777888888888888776322 23445555666688888888888888765
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00026 Score=69.44 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=87.6
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 605 (668)
-...+...|++++|+..|+++.+ ..| +...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34556778999999999999984 355 4778888899999999999999999888 4444 5667888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+++.|+..|+++++++|.++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877776654444
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00023 Score=64.72 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh-h--CCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACET-H--NNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~-~--~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
+-|...|..|...|...|+.+.|...|.+. ... ++...+..+..++.. . .+..++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 337899999999999999999999999887 333 455666666666433 2 35677889999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEE
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWI 664 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 664 (668)
|+..+.+.|++.+|...++.|.+..+ .+|+-+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887 66654433
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00036 Score=56.51 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASML 598 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 598 (668)
++..+...+.+.|++++|.+.++.+.....-.+ ....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777766664311111 1234555667777777777777777765 22232 34566666
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.++.+.|+.+.|...++++.+..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 667777888888888888888887775544
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.0003 Score=53.32 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCchH
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG--------DLDLGRLIHERITREKLEYDTVL 142 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 142 (668)
+....|..+...+++.....+|+.+++.|+..|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3445666677779999999999999999993399999999999987653 34467889999999999999999
Q ss_pred hhHHHhhhhh
Q 005943 143 MNTLLDMYVK 152 (668)
Q Consensus 143 ~~~ll~~~~~ 152 (668)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.00048 Score=59.93 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
...+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|+++.|...++++.+..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344556666666667777777776655 21221 3456667777778888888888888888888888888888888
Q ss_pred HHHhcCC--------------hhhHHHHHHHHHhcCC
Q 005943 634 VYATLGM--------------WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 634 ~~~~~g~--------------~~~a~~~~~~~~~~~~ 656 (668)
+|...|+ +++|.+.+++....++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 8877766 4556666666555443
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=5.9e-05 Score=53.74 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|++.++++.+.+|++..++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888899999999999998888888899999999999999988888776655
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.00067 Score=69.50 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCC--------CHHHHHHHHHhccc
Q 005943 486 RDVVSWTGIIVGCGQN-----GRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAG--------LVEEAWTIFTSMKP 551 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g--------~~~~a~~~~~~~~~ 551 (668)
.+...|...+++.... ++...|..+|++..+ ..|+.. .|..+..++.... ++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566666666664332 225567777777776 356542 3443333222110 11122222222111
Q ss_pred ccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 552 EYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 552 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 0011122334444433334444555555555444 2334444444444444455555555555555555555444
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.12 Score=54.43 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCHH---HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 593 IWASMLKACETHNNTK---LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.+.++..+.+.++.. +|+.+++......|.|..+=..++++|.-.|-+..|.++++.+.-+.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 4467778888887655 567778888889999999999999999999999999999999988777
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.00069 Score=51.43 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=67.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCC-CCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchh
Q 005943 109 SAVLKACSLSGDLDLGRLIHERITREKL-EYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQ 187 (668)
Q Consensus 109 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (668)
...|..|...+++.....+++.+++.|+ .|++.+|+.++.+.++..--...+-..|. ....
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~------------------~LLt 90 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLT------------------NLLT 90 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHH------------------HHHH
Confidence 4456777778999999999999999999 89999999999988775432111111111 1345
Q ss_pred hHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005943 188 VHAFCVKRGFEKEDVTLTSLIDMYLKC 214 (668)
Q Consensus 188 ~~~~~~~~g~~~~~~~~~~li~~~~~~ 214 (668)
+..+|+..+++|+..+|+.++..+.+.
T Consensus 91 vYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 91 VYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 678888999999999999999887653
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.63 E-value=0.00018 Score=52.16 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..+.+.++++.|.+++++++..+|+++..+...+.++.+.|++++|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577889999999999999999999999999999999999999999999999888776
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0011 Score=62.40 Aligned_cols=162 Identities=10% Similarity=0.017 Sum_probs=115.0
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhhcCCCHHHHHHHHHhcccccCCCCChhHHHH-
Q 005943 489 VSWTGI-IVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS--ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYC- 564 (668)
Q Consensus 489 ~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~- 564 (668)
..|..+ ..++.-.|++++|...--..++. .++. .+..+++ ++...++.+.|...|++.. .+.|+...-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 344433 23456678888888877666653 2221 2333333 4456778888888888877 55666432221
Q ss_pred ------------HHHHhhhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 565 ------------MVDLLGQAGCFDDAEQLIAEM-P-----FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 565 ------------l~~~~~~~g~~~~A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
=.+-..+.|++.+|.+.+.+. . .+|+...|.....+..+.|+..+|+.-.+++.+++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 123456778899999988877 3 3355666777777788899999999999999999999888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|..-+.++...++|++|.+.++...+...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999988876544
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.00065 Score=58.92 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777788888889999999988877 22222 347788888899999999999999999999999888888888
Q ss_pred HHHH-------hcCChhhHHHHHHHH
Q 005943 633 NVYA-------TLGMWDSLSKVRKAG 651 (668)
Q Consensus 633 ~~~~-------~~g~~~~a~~~~~~~ 651 (668)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.071 Score=50.67 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccc-cCCCCC--hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-----PNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPE-YGLEPH--LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~ 561 (668)
+..+...+.+.|++++|+++|++....-.. .+.. .|...+-++...||+..|.+.+++.... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 445666777888888888888887764322 2222 2333344566678888888888887632 122222 334
Q ss_pred HHHHHHHhhhc--CChHHHHHHHHhCC
Q 005943 562 YYCMVDLLGQA--GCFDDAEQLIAEMP 586 (668)
Q Consensus 562 ~~~l~~~~~~~--g~~~~A~~~~~~~~ 586 (668)
...|+.++-.. ..+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666666432 34666666666664
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.08 Score=51.14 Aligned_cols=417 Identities=10% Similarity=0.060 Sum_probs=225.6
Q ss_pred HHhCCChHHHHHHhhccCCCCc---chHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 211 YLKCGEIDDGLALFNFMPERDV---VSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 211 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
+-+.+++.+|.++|.++.+... ..+. .....+.++++|.. ++++.....+....+ ..| ...|
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lk---------eEvl~grilnAffl-~nld~Me~~l~~l~~----~~~-~s~~ 80 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLK---------EEVLGGRILNAFFL-NNLDLMEKQLMELRQ----QFG-KSAY 80 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHH---------HHHHhhHHHHHHHH-hhHHHHHHHHHHHHH----hcC-CchH
Confidence 4578999999999988873221 1111 01122344555543 456666666665544 334 3345
Q ss_pred HHHHHH--HHhCCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Q 005943 288 NSMISG--YVLNEQNEEAITLLSHIHSS--GMCI------------DSYTFTSALKACINLLNFNSRFALQVHGLIVTSG 351 (668)
Q Consensus 288 ~~li~~--~~~~~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 351 (668)
-.+..+ +.+.+++.+|++.+..-.+. +-.| |-.-=++..+++...|.+ .+++.++..+...=
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f--~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRF--SEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHH
Confidence 555444 35678888988888776554 3222 122224566778888888 78887777776654
Q ss_pred C----CCccchHHHHHHHHHhcCChHH---------------HHHHHccCCCCChh----------hHHHHHHHHHhc--
Q 005943 352 Y----ELDYIVGSNLIDLYARLGNVKS---------------ALELFHRLPKKDVV----------AWSGLIMGCTKH-- 400 (668)
Q Consensus 352 ~----~~~~~~~~~l~~~~~~~~~~~~---------------a~~~~~~~~~~~~~----------~~~~l~~~~~~~-- 400 (668)
+ ..+..+|+.++-++.+.--++. +.-..+++...+.. ....++....-.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 4 4788888887776665422221 11111111111111 111111111111
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHH-HHHHHHHHhccccchHhHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCChHH
Q 005943 401 GLNSLAYLLFRDMINSNQDVNQF-IISSVLKVCSCLASLRRGKQVHAFCVKRGFE----KEDITLTSLIDMYLKCGEIDD 475 (668)
Q Consensus 401 ~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 475 (668)
.+..--.++++.....-+.|+.. ....++..+.. +.+++..+-+.+....+. .-..++..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11112233333333444555543 23334444433 445555444443333211 123456667777778888888
Q ss_pred HHHHhccCC--CCCHhH-------HHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhhcCCC-
Q 005943 476 GLALFKFMP--ERDVVS-------WTGIIVGCG----QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS---ACRHAGL- 538 (668)
Q Consensus 476 A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~- 538 (668)
|.+.+.-+. +|+... -..+-+..+ ..-+...-+.+|+......+.-.. ....++. -+-+.|.
T Consensus 317 a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~ 395 (549)
T PF07079_consen 317 AKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQC 395 (549)
T ss_pred HHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCc
Confidence 877766443 343221 111112222 112344455666666664332221 2222222 3445555
Q ss_pred HHHHHHHHHhcccccCCCC-ChhHHHHHH----HHhhhcCC---hH---HHHHHHHhCCCCC----CHHHHHHHHHH--H
Q 005943 539 VEEAWTIFTSMKPEYGLEP-HLEHYYCMV----DLLGQAGC---FD---DAEQLIAEMPFKP----DKTIWASMLKA--C 601 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~g~---~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~ 601 (668)
-+.|+++++.+. .+.| |..+-+.+. ..|..+=. +. +-..++++.+..| +...-|.+..| +
T Consensus 396 dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 396 DEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred cHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 788999988887 4445 333333222 23332211 11 2233344555444 45566777777 6
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
..+|++.++.-...-+.+..| ++.+|..++-.+....+|++|..++.++
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 689999999988888888999 7999999999999999999999999875
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.0067 Score=55.74 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=99.5
Q ss_pred HHHHHhcCChHHHHHHhccCCC--CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE--RDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRH 535 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 535 (668)
...+...|++++|.+.|+++.. |+.. ..-.+..++.+.++++.|...+++..+. .|+. ..|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3444566777777777777654 3221 1234556677777888888888777774 2322 233333333221
Q ss_pred --CC---------------CH---HHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 005943 536 --AG---------------LV---EEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWA 595 (668)
Q Consensus 536 --~g---------------~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 595 (668)
.+ |. ..|...|++ +++-|-...-..+|...+..+...--...+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~la~~e~- 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRLAKYEL- 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHHHHHHH-
Confidence 10 11 122233333 333333333344454444433211001111
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..-|.+.|.+..|..-++.+++..|++ +.++..++.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 23444889999999999999999988775 45677888999999999999998877653
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0016 Score=61.48 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA-CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
..|-.+++...+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888999999999988542 2233344433333 33457777799999999864 4556788888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKPDK----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 222333 48999999989999999999999999998887543
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=0.00011 Score=42.52 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=24.6
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005943 286 LWNSMISGYVLNEQNEEAITLLSHIHSSGM 315 (668)
Q Consensus 286 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 315 (668)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887763
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.55 E-value=0.03 Score=56.14 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=16.4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHH
Q 005943 198 EKEDVTLTSLIDMYLKCGEIDDGLAL 223 (668)
Q Consensus 198 ~~~~~~~~~li~~~~~~g~~~~A~~~ 223 (668)
.|-...+.+=+..|...|.+++|.++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcc
Confidence 34445555556667778888777643
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00063 Score=61.48 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=80.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhc
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQA 572 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 572 (668)
..-+.+.++|.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34467788999999999999884 55 55667888889999999999988877776 55675 77888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005943 573 GCFDDAEQLIAEM-PFKPDKTIWASMLKA 600 (668)
Q Consensus 573 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 600 (668)
|++++|.+.|++. .+.|+..+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999998887 678887777654443
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00012 Score=42.30 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.53 E-value=0.00075 Score=58.22 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=81.6
Q ss_pred HHHhhhhc--CCCChhHHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhcc-----------
Q 005943 57 AHKLFDEM--ARKNIVSWTTMVTAYTS-----NKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLS----------- 118 (668)
Q Consensus 57 a~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----------- 118 (668)
-...|+.. ...|-.+|..++..+.+ .|..+-....+..|.+.|+. -|..+|+.||..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34556665 45788888888888864 46777778888899999987 8999999999877542
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 119 -----GDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 119 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
.+-+-|.+++++|...|+-||..|+..++..+++.+..-
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 245678999999999999999999999999999988776
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.092 Score=50.27 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+... +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333455555566666666666666666666666666666666666655443221 12234444455555555554
Q ss_pred HhHHHHHH
Q 005943 439 RRGKQVHA 446 (668)
Q Consensus 439 ~~a~~~~~ 446 (668)
.+|..+..
T Consensus 254 ~eA~~yI~ 261 (319)
T PF04840_consen 254 KEASKYIP 261 (319)
T ss_pred HHHHHHHH
Confidence 44444444
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00035 Score=63.10 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=91.1
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNT 607 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 607 (668)
.-+.+.+++.+|+..|.+.+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 44778999999999999998 6777 4666777889999999999999887766 55553 55889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
++|++.|+++++++|++......|-.+-.+.+.-.
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999977777777766666555
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0009 Score=57.74 Aligned_cols=114 Identities=12% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCchHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh-HHHHhhhhhhhhhcCCCch
Q 005943 103 PNGFMYSAVLKACS-----LSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT-RKLFDQYSNWAASAYGNVA 176 (668)
Q Consensus 103 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 176 (668)
.|-.+|..++..+. +.|.++-....+..|.+.|+.-|..+|+.||+.+=+ |..- +.+|+.+=.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~---------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFM---------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhc----------
Confidence 56666777766665 468888889999999999999999999999999876 4443 444333221
Q ss_pred hhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCCh-HHHHHHhhcc
Q 005943 177 LWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEI-DDGLALFNFM 227 (668)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 227 (668)
.|..-.+-+.++++.|...|+-||.+|+..++..+.+.+.. .+..++.-.|
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 23334445789999999999999999999999999887752 3333443333
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0013 Score=64.48 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA 572 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 572 (668)
....+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++. .+.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999852 3345678888889999999999999999998 4456 577888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005943 573 GCFDDAEQLIAEM-PFKPDKTIWASMLKA 600 (668)
Q Consensus 573 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 600 (668)
|++++|...|++. ...|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999987 556665555444433
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.17 Score=52.22 Aligned_cols=328 Identities=11% Similarity=0.052 Sum_probs=174.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
..+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+..++.+.+..+.-.+... .+-..|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345667778888888888877764332222 5677777777776655444444444444333333 33445555666666
Q ss_pred hcCChHHHHHHHccCCCC--------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchH
Q 005943 368 RLGNVKSALELFHRLPKK--------DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLR 439 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 439 (668)
.+|+.+-|..+++.=+.. +..-+...+.-....|+.+....++-.|... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 789999999888654432 2233555566667778887777776666532 1111111111 1223
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhc-cC------CCCCHhHHHHHHHHHHhcCC---------
Q 005943 440 RGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFK-FM------PERDVVSWTGIIVGCGQNGR--------- 503 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~------~~~~~~~~~~l~~~~~~~~~--------- 503 (668)
.|..++.++.+..-... +-+.|-...+.. +..-|. +- ..+-.........++.+...
T Consensus 590 ~a~~lY~~~~r~~~~~~------l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDRAT------LYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhhchhh------hhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 33344433332110000 011111111111 111111 00 01111122223333333322
Q ss_pred -hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHH
Q 005943 504 -AKEAIAYFQEMIQ-SRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQL 581 (668)
Q Consensus 504 -~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 581 (668)
..+-+.+.+.+.. .|..-...+.+--+.-+...|...+|.++-++.+ -||...|..-+.++...+++++-.++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1111122222222 1222333455555566667788888877776665 57888888888888888888877777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 582 IAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 582 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
-+..+. +.-|.-.+.+|.+.|+.++|..++-+.-. +...+.+|.+.|++.+|.+.--
T Consensus 738 Akskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 666642 34466677788888888888777766322 2256677778888877776543
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.45 E-value=0.0012 Score=50.69 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=42.9
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNT 607 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 607 (668)
...+...|++++|..++++..+. .+.+...+..+..++...|++++|.+.++.. ...| +...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33344445555555555444421 1112234444455555555555555555443 1112 223445555555555666
Q ss_pred HHHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSP 622 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p 622 (668)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555444
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.00044 Score=48.58 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+...+.+.|++++|.+.|+.+ ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4445 566777788888899999999999999999998874
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0038 Score=64.11 Aligned_cols=142 Identities=11% Similarity=0.042 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHhhc--C---CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhc--------CChHHHHHHHHh
Q 005943 519 LKPNEITFLGVLSACRH--A---GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQA--------GCFDDAEQLIAE 584 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 584 (668)
.+.|...|...+++... . ++...|..+|++.. ..+|+ ...|..+..++... ++...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45566677776665432 2 23567777777777 44676 33344333333211 123445555444
Q ss_pred C----CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc
Q 005943 585 M----PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKAG 660 (668)
Q Consensus 585 ~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 660 (668)
. ....+...|..+.......|++++|...++++.+++| +...|..+++++...|+.++|...+++.....+..|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3 1223445666665555667788888888888888887 4667888888888888888888888888777775555
Q ss_pred eeEE
Q 005943 661 MSWI 664 (668)
Q Consensus 661 ~~~~ 664 (668)
+-|.
T Consensus 489 ~~~~ 492 (517)
T PRK10153 489 LYWI 492 (517)
T ss_pred HHHH
Confidence 5444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.42 E-value=0.023 Score=47.60 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHH
Q 005943 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTI 593 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 593 (668)
.-|....-..|..+..+.|++.+|...|++... |+- -|......+.++....+++.+|...++++ ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555666677777777777777777764 433 35666667777777777777777777766 2112 2223
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
...+...+...|.+..|+..|+.+..-.|. +.....++..+.++|+.++|..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 344556677777777777777777776665 4455566666777776666655444443
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.0061 Score=57.93 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQN-GRAKEAIAYFQEMIQS----RLKPN--EITFLGVLSA 532 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~ 532 (668)
|...+..|...|++..|-.+ +..+...|-.. |++++|++.|++..+. | .+. ..++..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~-----------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKC-----------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHH-----------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34445556666666666544 33456666666 7788888877776653 2 221 1245666667
Q ss_pred hhcCCCHHHHHHHHHhcccccC----CCCCh-hHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYG----LEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+.+.|++++|.++|++.....- .+.+. ..+...+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888888888777654311 01111 12223334555667777777777765
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.00043 Score=51.72 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=51.7
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHH
Q 005943 501 NGRAKEAIAYFQEMIQSRL-KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 578 (668)
.|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..+++. . ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677888888888877532 12334445567788888888888888877 2 22332 34444567778888888888
Q ss_pred HHHHHh
Q 005943 579 EQLIAE 584 (668)
Q Consensus 579 ~~~~~~ 584 (668)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=97.39 E-value=0.0018 Score=53.59 Aligned_cols=90 Identities=7% Similarity=-0.027 Sum_probs=71.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
...--+...|++++|..+|.-+- ..-+..-|..|...+...+++++|...|..+..+.++||..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567789999998888762 2235556677777788888999999999999998899999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 005943 642 DSLSKVRKAGKK 653 (668)
Q Consensus 642 ~~a~~~~~~~~~ 653 (668)
+.|+.-|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999988887765
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0039 Score=61.28 Aligned_cols=121 Identities=18% Similarity=0.081 Sum_probs=92.8
Q ss_pred cCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----CCHh
Q 005943 416 SNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR--GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----RDVV 489 (668)
Q Consensus 416 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~ 489 (668)
.+.+.+...+..+++.+....+++.+..++..++.. ....-..+..+++..|.+.|..+.++.++..=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445667778888888888888888888888877765 2223344556888888888888888888876553 7888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
++|.|+..+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88889988888899988888888888877777777776666666554
No 187
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.004 Score=54.14 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
...+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++... ..| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHH
Confidence 44566677777777888888888887776432222 24566677777778888888887777763 344 3555556
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
+..+|...|+...+..-++.. ...+++|.++++++...+|++ +..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 123677888888888888886 4444444544443
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0021 Score=63.15 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
......+++.+....+++.+..++-+.........--..+..++++.|.+.|..+.++.++..=..-|+-||..|++.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 34455567777777888899999888854322232234456799999999999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhc
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARL 369 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (668)
..+.+.|++ ..|.++...|...+...++.++..-+.+|.+.
T Consensus 146 d~fl~~~~~--~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 146 DHFLKKGNY--KSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHhhcccH--HHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999 99999999999888888887777666666665
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.0018 Score=61.20 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ-AGCFDDAEQLIAEM--PFKPDKTIWASMLKA 600 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 600 (668)
.+|..++..+.+.+..+.|..+|++.... -..+..+|...+..-.. .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888899999999999999843 23356667666666444 46666799999988 355678889999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.+.++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999766644 589999999999999999999999988753
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.27 E-value=0.00021 Score=42.02 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 788999999999999999999999999999863
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.25 E-value=0.0024 Score=59.14 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWAS 596 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ 596 (668)
|...+....+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+ ...|+ ...+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 443333334445555555555555532 2321 34444455555555555555555544 11111 222223
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+...+...|+.+.|..+|+++++..|++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3333444555555555555555555544
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.00054 Score=48.73 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=23.3
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
..|++++|.+.|+++... .| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555422 23 3444445555555555555555555555
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.19 E-value=0.22 Score=47.25 Aligned_cols=271 Identities=15% Similarity=0.151 Sum_probs=172.7
Q ss_pred cCChHHHHHHHccCC---CCChhhHHHHHHH--HHhcCCcHHHHHHHHHHHHcCCCCcH--HHHHHHHHHhccccchHhH
Q 005943 369 LGNVKSALELFHRLP---KKDVVAWSGLIMG--CTKHGLNSLAYLLFRDMINSNQDVNQ--FIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a 441 (668)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|.+. |.. ..+..+.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554433 2344444444443 33468888888888888642 111 1222333333566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMP-----ERDVV--SWTGIIVGCG---QNGRAKEAIAYF 511 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 511 (668)
.++-+..-..- +.-.....+.+...|..|+++.|+++.+.-. ++++. .-..|+.+-. -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77776654432 3345677888899999999999999988654 34432 2222332211 123455666655
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----C
Q 005943 512 QEMIQSRLKPNEIT-FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM----P 586 (668)
Q Consensus 512 ~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 586 (668)
.+..+ +.|+-.. -..-..++.+.|+..++-.+++.+-+. .|.+..+..++ +.+.|+ .++.-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHh
Confidence 55554 5777653 344456889999999999999999844 66666554433 334454 333333322 2
Q ss_pred CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CChhhHHHHHHHHHh
Q 005943 587 FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL-GMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 653 (668)
.+| +..+...+..+....|++..|..-.+.+....|. .++|..++++-... ||-.+++..+-+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 344 5567777888888999999999999998888887 56888888887655 999999988866543
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.0071 Score=52.39 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555666666666665554321111 1245555555555566666665555554
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.25 Score=46.82 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=164.6
Q ss_pred hHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHh--ccccchHhHHHHHHHHHHhCCCCchhH--HHH
Q 005943 389 AWSGLIMGCTK--HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVC--SCLASLRRGKQVHAFCVKRGFEKEDIT--LTS 462 (668)
Q Consensus 389 ~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 462 (668)
-|.+|-.++.. .|+-..|.+.-.+-.+ -+..|...+..++.+- .-.|+.+.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555544 4666666655544321 1334444455555433 4469999999999998753 22221 233
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHh--h
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI--TFLGVLSAC--R 534 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~--~ 534 (668)
|.-.--+.|..+.|..+-++... |. .-.+...+...+..|+++.|+++++.-++.. +.++.. .-..|+.+- .
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 44444577888888887776654 32 3467889999999999999999998877643 445543 222333321 1
Q ss_pred -cCCCHHHHHHHHHhcccccCCCCChhH-HHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHH
Q 005943 535 -HAGLVEEAWTIFTSMKPEYGLEPHLEH-YYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 535 -~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
-..+...|...-.+.. .+.||... -..-..+|.+.|+..++-.+++.+ +..|.+..+...+. .+.|+.....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 1234556666555544 66777433 334467899999999999999988 66787777655443 4667654432
Q ss_pred -HHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 612 -IIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 612 -~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+-.+++..+.|++......++.+-...|++-.|+.--+...
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 44555666889999999999999999999887776554443
No 196
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.06 E-value=0.019 Score=47.39 Aligned_cols=94 Identities=7% Similarity=-0.012 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
+....-.+..-+...|++++|..+|+-+.. +.|... -|..|..++-..|++++|+..|.... .+.| |+..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHH
Confidence 333344444555566666666666666665 344433 34555555666666777766666665 3334 3566666
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..++...|+.+.|.+.|+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666666544
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.01 E-value=0.063 Score=42.23 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=90.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
..-.|..++..++..+.... .+..-++.++--...+-+-+-..++++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34568888889998888763 355556666655555556566666776665433322 2444455
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...-+-.+. .+.......+.++...|+-+.-.+++..+.+.+..+|.++..++.+|.+.|+..++.+++++.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 544444443 244556777888889999999999999988777777999999999999999999999999999999874
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.00 E-value=0.0019 Score=46.06 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN-NTKLVSIIAEQLLATSP 622 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 622 (668)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3466777888888888888888888877 3334 5667777788888888 68899999998888877
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.014 Score=46.36 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=46.0
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HH-HHHHHHHHHH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KT-IWASMLKACE 602 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~-~~~~l~~~~~ 602 (668)
..++-..|+.++|+.+|++.... |.... ...+..+...|...|++++|..++++. ...|+ .. ....+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34555666666666666666643 44443 334455556666666666666666655 11232 11 1122223445
Q ss_pred hhCCHHHHHHHHHHHH
Q 005943 603 THNNTKLVSIIAEQLL 618 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~ 618 (668)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666665554444
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.29 Score=49.96 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQY 273 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 273 (668)
-+....-.+..++.+.|.-++|.+.|-+--.|. +.+..|...+++.+|.++-++.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk--------------------aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK--------------------AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhccCcH--------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677777777777776664444333 2334466667777777776665
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.93 E-value=0.11 Score=50.23 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPER-------DVVSWTGIIVGCGQ---NGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
.++-.|....+++..+++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777652 11222234445556 7889999999888666666778888887777
Q ss_pred Hhh----c-----CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChH----HHHHHH---HhC----C---CC
Q 005943 532 ACR----H-----AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD----DAEQLI---AEM----P---FK 588 (668)
Q Consensus 532 ~~~----~-----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~ 588 (668)
.|- . ....+.|...|.+.- .+.||...--.++-.+...|... +..++- ..+ + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 1 224677888887765 44566544334444444444322 222222 111 1 12
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.+--.+-+++.++.-.|+.++|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344455677888888999999999999999988775
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.90 E-value=0.47 Score=46.13 Aligned_cols=457 Identities=11% Similarity=0.087 Sum_probs=219.7
Q ss_pred HHcCCChhHHHHhhhhcCC---CC------hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHH--h
Q 005943 48 YADFTSLNDAHKLFDEMAR---KN------IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC--S 116 (668)
Q Consensus 48 ~~~~g~~~~a~~~~~~~~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~--~ 116 (668)
+-+++++.+|.++|.++-. .+ ...-+.++++|.. .+.+.....+....+.. | ...|-.+..++ .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence 3467889999999988742 22 2245567777765 45666666666666654 5 44566666554 4
Q ss_pred ccCChHHHHHHHHHHHHc--CCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHH
Q 005943 117 LSGDLDLGRLIHERITRE--KLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVK 194 (668)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (668)
+.+++++|.+.+...... +.+|..---| + ..
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n--i----------~~----------------------------------- 123 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTN--I----------QQ----------------------------------- 123 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhh--H----------HH-----------------------------------
Confidence 788999999888887765 3222110000 0 00
Q ss_pred hCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHH
Q 005943 195 RGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLF 270 (668)
Q Consensus 195 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (668)
.-+|...=+..+..+...|++.++..+++++. ++.. .| +..+|+.++-++++. .|
T Consensus 124 --l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~-~w----------~~d~yd~~vlmlsrS--------Yf 182 (549)
T PF07079_consen 124 --LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC-EW----------NSDMYDRAVLMLSRS--------YF 182 (549)
T ss_pred --HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh-cc----------cHHHHHHHHHHHhHH--------HH
Confidence 00233333456677778888888888877766 1110 01 455555555555442 22
Q ss_pred HHhhh-hhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 005943 271 DQYSS-WAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT 349 (668)
Q Consensus 271 ~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 349 (668)
-++.+ .+....|+ |.-++-.|.+.=+ .++.-.=..+-|....+..++....-...-....-.++++.-.+
T Consensus 183 LEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 183 LELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 22211 11112222 3333333332111 11110001123444444444433332221100222333333344
Q ss_pred hCCCCccc-hHHHHHHHHHhcCChHHHHHHHccCC--------CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 005943 350 SGYELDYI-VGSNLIDLYARLGNVKSALELFHRLP--------KKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDV 420 (668)
Q Consensus 350 ~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 420 (668)
.-+.|+.. +...++..+.+ +.+++..+.+.+. +.=..++..++....+.++...|.+.+.-+.-. .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 44555433 23334444433 3444433333322 123456777788888888888888877766543 33
Q ss_pred cHHHHHHH-------HHHhc-ccc---chHhHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-hHHHHHHhccCCC
Q 005943 421 NQFIISSV-------LKVCS-CLA---SLRRGKQVHAFCVKRGFEKEDITLTSLI---DMYLKCGE-IDDGLALFKFMPE 485 (668)
Q Consensus 421 ~~~~~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~ 485 (668)
+...-.-+ -+..+ ... +...-..+|+......+.. ......++ .-+-+.|. -++|+++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33211111 11111 111 1222223333333322211 11111122 22233343 6677777776653
Q ss_pred ---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCHHH----HHHHHH--HhhcCCCHHHHHHHHHhc
Q 005943 486 ---RDVVSWTGII----VGCGQ---NGRAKEAIAYFQEMIQSRLKPNEIT----FLGVLS--ACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 486 ---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~--~~~~~g~~~~a~~~~~~~ 549 (668)
-|...-|.+. .+|.+ ...+.+-+.+-+-..+.|+.|-... -+.+.+ -+...|++.++.-.-.-+
T Consensus 409 ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 409 FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2333333222 12221 1223333333334445566664432 233333 244577777776654444
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWAS 596 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 596 (668)
. .+.|++.+|..+.-++....++++|.+++.+++ |+...++.
T Consensus 489 ~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 489 T---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred H---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 4 567788888888888888888888888888875 45555543
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.021 Score=47.80 Aligned_cols=106 Identities=14% Similarity=0.244 Sum_probs=90.9
Q ss_pred ccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--C
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--D 624 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~ 624 (668)
.++...-|+...--.|..++.+.|+..+|...|++. .+.-|......+.++....+++..|...++.+.+..|. +
T Consensus 80 ~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 80 TEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 333356788888888999999999999999999987 35568888888999999999999999999999997765 5
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+.....+++.|...|++++|...++...+--
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 6788899999999999999999998877643
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.023 Score=45.17 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=74.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLG 570 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 570 (668)
+..++-..|+.++|+.+|++..+.|+.... ..+..+...+...|++++|..++++...++.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3677788889999999999999999886421111 2233334556788
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005943 571 QAGCFDDAEQLIAEMPFKPDKTIWASMLKAC 601 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 601 (668)
..|+.++|++.+-..- .++...|.--+..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8999999998775441 12333444444433
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.0021 Score=40.64 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.++..+..++.+.|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999998888764
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.82 E-value=0.012 Score=54.65 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDK----TIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLS 632 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 632 (668)
.|...+..+.+.|++++|...|+.. ...|+. ..+..+...+...|+++.|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556677777666665 222332 344555566666777777777777777665553 44445556
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++...|++++|.++++.+.+.-+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 666667777777777766665544
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.33 Score=46.52 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHhcCChHHHHHHhccCCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcC
Q 005943 465 DMYLKCGEIDDGLALFKFMPE-------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHA 536 (668)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~ 536 (668)
+-..+.|++..|.+.|.+... ++...|.....+..+.|+..+|+.-.++..+ +.|... .|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 345678899999999988764 3555677777778888999999998888776 444432 455555567778
Q ss_pred CCHHHHHHHHHhcccc
Q 005943 537 GLVEEAWTIFTSMKPE 552 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~ 552 (668)
++|++|.+-++...+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8899999888887743
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0065 Score=59.16 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKT----IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
+...++.+..+|.+.|++++|+..|++. ...|+.. +|..+..+|...|+.++|++.++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3567777777888888888888887775 5556533 4777777777888888888888887776322 221111
Q ss_pred H--HHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 N--VYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~--~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. .+....+.++..++++.+++-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 12233444566777777776665
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.096 Score=48.21 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee----HHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL----WNSMISGYVLNEQNEEAITLLSHIHSSG 314 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g 314 (668)
+...-.....+...|++++|.+.|+.+.. ..|+... .-.+..++.+.+++++|...+++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33444556667789999999999999976 4454322 2345678899999999999999998764
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.12 Score=52.20 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=131.1
Q ss_pred CCCchHHHHHHHHhccCChHHHHHH---------HHHHHHcCCCCCchHhhHHHhhhhhcCChh-HHHHhhhhhhhhhcC
Q 005943 103 PNGFMYSAVLKACSLSGDLDLGRLI---------HERITREKLEYDTVLMNTLLDMYVKCGSLT-RKLFDQYSNWAASAY 172 (668)
Q Consensus 103 p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~~~~~~~~~~~~~~~ 172 (668)
|....+.+=+--+...|.+++|.++ |+.+... ..+.-.++..-++|.+..+.. .++.-+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~E--------- 622 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISE--------- 622 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHH---------
Confidence 4444555555666677777777554 2222211 122334455555666655544 333222
Q ss_pred CCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcch--HHHHhhhcccCchhhH
Q 005943 173 GNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVS--WTGIIVGCFECSCFTL 250 (668)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 250 (668)
++++.++|-.|+.... ...++-.|++.+|-++|.+-...+... |+ |...
T Consensus 623 ----------------L~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyT---------DlRM- 673 (1081)
T KOG1538|consen 623 ----------------LEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYT---------DLRM- 673 (1081)
T ss_pred ----------------HHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHH---------HHHH-
Confidence 3456778887876543 345666788888888887665443211 11 0000
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHH------HHhCCCCC---CHHH
Q 005943 251 SALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSH------IHSSGMCI---DSYT 321 (668)
Q Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~~p---~~~t 321 (668)
-..+.-+...|..++-..+.++-.++.. |+.--.+....+...|+.++|..+.-+ +.+-+-+. +..+
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr----~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWAR----NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhh----hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 1223345555555555544444333322 222223444556677777777765322 22222222 3334
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcC
Q 005943 322 FTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHG 401 (668)
Q Consensus 322 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 401 (668)
...+..-+.+...+ ..|.++|..|-+. ..++......++|++|..+-++.++--...|-.-.+-++...
T Consensus 750 l~~~a~ylk~l~~~--gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSP--GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhcccc--chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 44444444455555 6677777665432 347777888899999999888887643333333334444444
Q ss_pred CcHHHHHH
Q 005943 402 LNSLAYLL 409 (668)
Q Consensus 402 ~~~~a~~~ 409 (668)
++++|.+.
T Consensus 819 rFeEAqkA 826 (1081)
T KOG1538|consen 819 RFEEAQKA 826 (1081)
T ss_pred hHHHHHHH
Confidence 44444433
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.69 E-value=0.0076 Score=43.45 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=48.2
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 567 DLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
..|.+.+++++|.++++.+ ...| +...|......+.+.|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5677788888888888877 3334 455666677778888888888888888888888776555443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.0036 Score=45.90 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc---CC-C---CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLAT---SP-E---DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+++.+...+...|++++|+..++++++. .+ + -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35667777788888888888888887763 12 2 245677888888888888888888887654
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=1.1 Score=46.66 Aligned_cols=137 Identities=13% Similarity=-0.001 Sum_probs=84.5
Q ss_pred HhCCCCChhhHH-----HHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCC---HHH
Q 005943 194 KRGFEKEDVTLT-----SLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNV---LCE 265 (668)
Q Consensus 194 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~---~~~ 265 (668)
..|+..+..-|. .+|+-+...+.+..|+++-+.+..|... ...+|....+-+.+..+ .+-
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~------------~~~Vl~~Wa~~kI~~~d~~d~~v 492 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ------------GDRVLLEWARRKIKQSDKMDEEV 492 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc------------ccHHHHHHHHHHHhccCccchHH
Confidence 456666555554 4577888899999999999988866533 14566677777776632 233
Q ss_pred HHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhccccchHHHH
Q 005943 266 ARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMC----IDSYTFTSALKACINLLNFNSRFAL 341 (668)
Q Consensus 266 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~~~a~ 341 (668)
+..+-+++.. ..-...+|..+.......|+.+-|..+++.=...+.. .+-.-+...+.-+...|+. +...
T Consensus 493 ld~I~~kls~----~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~--~Li~ 566 (829)
T KOG2280|consen 493 LDKIDEKLSA----KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDT--DLII 566 (829)
T ss_pred HHHHHHHhcc----cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCc--hhHH
Confidence 3334344411 2245677888888888999999999887643222211 1223344555566666666 5555
Q ss_pred HHHHHHH
Q 005943 342 QVHGLIV 348 (668)
Q Consensus 342 ~~~~~~~ 348 (668)
.++-++.
T Consensus 567 ~Vllhlk 573 (829)
T KOG2280|consen 567 QVLLHLK 573 (829)
T ss_pred HHHHHHH
Confidence 5554443
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.57 E-value=0.11 Score=46.55 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChhhHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPS---KYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 646 (668)
+..-|.+.|.+..|..-++.+++..|+++. .+..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 344588999999999999999999999754 46778888999999885543
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.016 Score=54.84 Aligned_cols=129 Identities=11% Similarity=0.012 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHh---cccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-------C-CCCCHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTS---MKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-------P-FKPDKT 592 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 592 (668)
.|..|...|.-.|+++.|+...+. +.+++|-+. ....+..+.+++.-.|+++.|.+.++.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666667777777665442 222333332 2455667777777778888877777643 1 112344
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATS------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+..++.+.|.-..++++|+.+..+=+.+- -....++-.|+.++...|..++|....+.-..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55566677766677777777776644411 12345666778888888888888777665443
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.46 E-value=0.97 Score=43.96 Aligned_cols=80 Identities=10% Similarity=0.066 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
-|..+|-.||.-+...|.+++..+.+++|..|-+.. +.+|..-+++-....++...+.+|.+...
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~------------~~aw~ly~s~ELA~~df~svE~lf~rCL~--- 104 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM------------EHAWRLYMSGELARKDFRSVESLFGRCLK--- 104 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc------------cHHHHHHhcchhhhhhHHHHHHHHHHHHh---
Confidence 366789999999999999999999999999877653 56777777777778888888888888755
Q ss_pred cCCCCeeeHHHHHHHH
Q 005943 279 SAYGNVALWNSMISGY 294 (668)
Q Consensus 279 ~~~~~~~~~~~li~~~ 294 (668)
...+...|...+.-.
T Consensus 105 -k~l~ldLW~lYl~YI 119 (660)
T COG5107 105 -KSLNLDLWMLYLEYI 119 (660)
T ss_pred -hhccHhHHHHHHHHH
Confidence 334556666655543
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.19 Score=44.96 Aligned_cols=137 Identities=10% Similarity=0.079 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHH-----H
Q 005943 389 AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTS-----L 463 (668)
Q Consensus 389 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 463 (668)
..+.++.+..-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...+++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666677788888888999999888888888888999999999999999999997776533333333333 3
Q ss_pred HHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
...|.-.+++..|...+.++.. .|+..-|.-.-+....|+..+|++.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3445567788888888877764 34555555555556678888888888888884 55554433
No 218
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.27 E-value=2.1 Score=45.82 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCL 435 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 435 (668)
..+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+=..| ...+..+..++..+.+.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3445556677777777733232 2345555566677777788777766666654443 22334444555444433
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.27 E-value=0.022 Score=47.93 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
....++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999998863
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.25 E-value=1.3 Score=43.18 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH-HHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH-YYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 565 (668)
...|.+.+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+-=... -||... -.-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456666666666666777777777777766 4556666666666443 56667777777665532 233222 3345
Q ss_pred HHHhhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 566 VDLLGQAGCFDDAEQLIAEM--PFKPD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+..+...++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++....|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 55666677777777777744 11122 4467777777777777777777777777777764
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.25 E-value=0.85 Score=41.16 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPS---KYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
+..-|.+.|.+..|..-++++++..|+.+. .+..+..+|...|..++|.+.-+-+....++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 334588999999999999999998776544 4566777899999999999988777655553
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.23 Score=44.35 Aligned_cols=135 Identities=9% Similarity=-0.041 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHH-----H
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHY-----Y 563 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~ 563 (668)
..-++++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.||.+.|...|++..+. .-..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4456677777778888888999999988655556677888888889999999999999977654 223333333 3
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPF-K-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.....|.-++++.+|...+.+... . .++...|.-.-...-.|+...|.+..+.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 334456667788888888887742 2 244444444444445678888999999998888774
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.16 Score=46.67 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CHHHH
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG---CFDDAEQLIAEM-PFKP-DKTIW 594 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 594 (668)
+-|...|..|..+|...|+.+.|...|.+..+- ..++...+..+..++.... ...++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 446678999999999999999999999988742 2335677777777665433 456788899888 3344 56666
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
..+...+...|++.+|...|+.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677778999999999999999999877754
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.086 Score=50.39 Aligned_cols=95 Identities=7% Similarity=-0.053 Sum_probs=77.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
.++..+.-+|.+.+++.+|++.-++. . .++|....---..++...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46777888999999999999888776 3 345777777778889999999999999999999999999888888887776
Q ss_pred cCChhhH-HHHHHHHHhc
Q 005943 638 LGMWDSL-SKVRKAGKKL 654 (668)
Q Consensus 638 ~g~~~~a-~~~~~~~~~~ 654 (668)
...+++. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6655554 7888888754
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.012 Score=42.98 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP-----FK---PD-KTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+++.+..+|...|++++|++.+++.- .. |+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666665440 11 22 34566666677777777777777777665
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.035 Score=52.94 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..++..+...+.+.+++..|++...+++..+|+|...++.-+.+|...|+++.|+..|+++.+..+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446777888899999999999999999999999999999999999999999999999999998776
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.76 E-value=0.1 Score=42.00 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHh
Q 005943 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLL 569 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (668)
+.|+..+..+++.+|+..|++..|.++++...+.++++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666777777776666666666666666666666543
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.083 Score=47.87 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=45.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM----PFKP-DKTIWASMLK 599 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~ 599 (668)
|+.-+. +.+.|++..|...|....+.+--.+ ....+--|.+++...|++++|..+|..+ +..| -+..+-.+..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 444333 2344555666555555553210000 1233334555555555555555555444 1111 1233444444
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
...+.|+.++|..+++++.+..|..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 445555555555555555555555443
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=1.2 Score=40.98 Aligned_cols=146 Identities=18% Similarity=0.146 Sum_probs=75.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 576 (668)
.....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3455666777777666666542 222334555666666777777777776666532 11111112223344444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCChhhH
Q 005943 577 DAEQLIAEMPFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT--SPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 577 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++. .-.+...-..++.++.-.|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443334 4444455555566666666666555555542 233455555666666555544433
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.69 E-value=0.092 Score=47.28 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=86.5
Q ss_pred hhHHHHhhhhcC--CCChhHHHHHHHHHhc-----CCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC-------
Q 005943 54 LNDAHKLFDEMA--RKNIVSWTTMVTAYTS-----NKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG------- 119 (668)
Q Consensus 54 ~~~a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~------- 119 (668)
+...+..|+..+ +.|-.+|-+.+..+.. .+.++-....++.|.+.|+. -|..+|+.||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344455666665 5788888888888753 35677777788999999988 99999999998876542
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh---HHHHhhhhh
Q 005943 120 ---------DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT---RKLFDQYSN 166 (668)
Q Consensus 120 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~~~~~~~~~ 166 (668)
+-+-+..++++|...|+.||..+--.|+.++++.+... .++.-.|+.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 33457889999999999999999999999999988777 334344444
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.62 E-value=0.099 Score=48.88 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHh-------ccCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH---HH
Q 005943 459 TLTSLIDMYLKCGEIDDGLALF-------KFMPER--DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-RLKPNE---IT 525 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~-------~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~ 525 (668)
+|..+.++.++.|.+++++..- .+..+. -...|..+.+++-+..++.+++.+-+.-... |..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555566666665554321 111111 1235556666666666777777766554443 333321 23
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCC--CC--ChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHH--
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGL--EP--HLEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPDKT-- 592 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-- 592 (668)
..++..++.-.+.++++++.|+...+-..- +| ...++..|...|.+..++++|+-+..+. +.+.-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344566777777888888888876532111 12 2467888899999999998877665544 2221111
Q ss_pred ---HHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCC----chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 ---IWASMLKACETHNNTKLVSIIAEQLLAT--SPED----PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+...+..++...|..-.|.+..+++.++ ...| ......++++|...|+.|.|..-++...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234445678889999999999998773 2333 4455678899999999998887776553
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.60 E-value=0.081 Score=44.48 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCCchHhh
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITR-----EKLEYDTVLMN 144 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 144 (668)
....++..+...|+++.|..+.+.+.... + -+...|..+|.++...|+...|.++++.+.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-P-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-T-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999999987 3 5778999999999999999999999988764 48888776543
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.61 Score=42.88 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhhCCH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWAS---MLKACETHNNT 607 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~ 607 (668)
......|+..+|...|+..... .+-+...-..|+++|...|+.+.|..++..++..-...-+.. -+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999988743 223467778899999999999999999999975544444433 23334444333
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.. -+++-...+|+|...-..++..|...|+.++|.+.+=.+.++..
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3222 24555667999999999999999999999999999888876644
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.54 E-value=4.4 Score=44.90 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
.+.-.++.--+.|.+.+|+.++..-.+.-...|.+...-+.....+++|.-.|+..-+. .-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence 34444555556677777777665433333334555555556677788877777654331 234667788899
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
|.+|..+..++.. +..--..+-..|+.-+...+++-+|.++..+....|.. .+..+++...+++|..+.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 9999888877752 22222333467888888888888888888777434322 3334455556666665555544
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=95.51 E-value=0.26 Score=48.49 Aligned_cols=142 Identities=9% Similarity=0.075 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHHC-CCCCCHH-HHHHHHHHhhc---------CCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhh
Q 005943 503 RAKEAIAYFQEMIQS-RLKPNEI-TFLGVLSACRH---------AGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLG 570 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 570 (668)
..+.|+.+|.+.... .+.|+.. .|..+..++.. ..+..+|.+.-++.. .+.| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 467788889888822 2567644 56666555432 123345555555555 4455 5667777777777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHhcCChhhHHH
Q 005943 571 QAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK--YVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~ 646 (668)
-.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++.++.|....+ ....++.|+..+- ++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~-~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPL-KNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCch-hhhHH
Confidence 778888888888887 45564 3455555556677888999999999988888886543 3344446766665 45555
Q ss_pred HH
Q 005943 647 VR 648 (668)
Q Consensus 647 ~~ 648 (668)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 44
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.9 Score=40.38 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHh----cCCCCchh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP-------FKPDK-TIWASMLKACETHNNTKLVSIIAEQLLA----TSPEDPSK 627 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~ 627 (668)
..+....+.|.+..++++|...|.+-. .-|+. ..|-..|-.+.-..|+..|+..++.-.+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555567777777777776665542 11222 2344555556666788888888888655 45777777
Q ss_pred HHHHHHHHHhcCChhhHHHHHH
Q 005943 628 YVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
...|+.+| ..||.|++.+++.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 88887765 5678888877754
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.39 E-value=0.16 Score=39.97 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=48.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCh
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED----PSKYVMLSNVYATLGMW 641 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 641 (668)
++...|+.+.|++.|.+. ..- .....||.-..++.-.|+.++|..=+++++++..+. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344556666666666544 222 244456666666666666666666666666643221 12344455556666666
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
|.|+.-|+.....|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 666666666555554
No 238
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.36 E-value=1.3 Score=38.56 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=90.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV 566 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 566 (668)
+..||-+.--+...|+++.|.+.|+...+. .|.. .+...-.-++.-.|+++-|.+-+...-+.-.-+|=...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 346777777778888888888888888774 4432 2333333345567888888776555543312223233333222
Q ss_pred HHhhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhc
Q 005943 567 DLLGQAGCFDDAEQLI-AEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED-------PSKYVMLSNVYATL 638 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 638 (668)
...-++.+|..-+ ++.. .-|..-|-..+..+.-. +.. .+.+++++.+...++ ..+|.-|++.+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2233555665443 3332 23444444433332211 111 123444444433222 45788899999999
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|+.++|..+++-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987765544
No 239
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.36 E-value=0.56 Score=41.98 Aligned_cols=67 Identities=16% Similarity=-0.016 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSS 313 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 313 (668)
....-.....+...|++++|.+.|+.+...-.+..--....-.++.++.+.|+++.|...+++....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445556667888999999999999997632211112334556778899999999999999998764
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.34 E-value=0.2 Score=45.26 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=82.8
Q ss_pred hHHHHHHHccCC--CCChhhHHHHHHHHHhc-----CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc--------
Q 005943 372 VKSALELFHRLP--KKDVVAWSGLIMGCTKH-----GLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA-------- 436 (668)
Q Consensus 372 ~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-------- 436 (668)
+-..++.|.... ++|..+|-+.+..|... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344566677766 56888888888777653 567777888899999999999999999999887643
Q ss_pred --------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 437 --------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 437 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
+-+-+..++++|...|+.||..+-..++++|++.+-+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3456788999999999999999999999999987754
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.28 E-value=1.3 Score=36.73 Aligned_cols=127 Identities=9% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ .....+.++. ..+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445666666667777777777777665 345556677777776543 3344444442 122233344566667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 571 QAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH-NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
+.+.++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777777752 22233333333 677777777665 3455567666665543
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.27 E-value=1.6 Score=42.40 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=107.1
Q ss_pred chHHHHHHHHcCCChhHHHHhhhhcCCC-------ChhHHHHHHHHHhc---CCChhhHHHHHHHHHhcCCCCCCCchHH
Q 005943 40 TGNNLLSMYADFTSLNDAHKLFDEMARK-------NIVSWTTMVTAYTS---NKRPNWAIRLYNHMLEYGSVEPNGFMYS 109 (668)
Q Consensus 40 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 109 (668)
+...++-+|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+...... ++..+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHH
Confidence 3445555788899999999999999763 12222234445666 89999999999996665545 8888998
Q ss_pred HHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh--HHHHhhhhhhhhhcCCCchhh
Q 005943 110 AVLKACSL---------SGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT--RKLFDQYSNWAASAYGNVALW 178 (668)
Q Consensus 110 ~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 178 (668)
.+...|-. ...++.|...+.+.... .||...-.-+...+...|... ..-...+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~------------- 286 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG------------- 286 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-------------
Confidence 88766642 22456666666655443 354433222333333334322 11111111
Q ss_pred hhhhhcchhhHHHHHHhCC---CCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchH
Q 005943 179 NSMLSGGKQVHAFCVKRGF---EKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSW 235 (668)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 235 (668)
..+-....+.|. ..+-..+.+++.++.-.|+.++|.+..+.|....+..|
T Consensus 287 -------~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 287 -------VKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred -------HHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111112223333 24556678999999999999999999999997766655
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.18 E-value=2.5 Score=38.70 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMP-----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS- 531 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 531 (668)
..+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 334444444455555555544444332 12233344444444555555555555555554322221 11111112
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhh
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD--KTIWASMLKACETH 604 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 604 (668)
.+...|+++.|...+++... ..| ....+......+...++.+++...+... ...++ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 45555666666666555531 122 1222333333344555566666555555 22222 34455555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++++.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666665555444444555554444555665555555443
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.17 E-value=0.12 Score=50.66 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+...++.+..+|...|++++|+..|++.. .+.|+. ..|..+..+|...|+.++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44577888888888888888888888877 456763 34778888888888888888888877
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.14 E-value=0.6 Score=38.08 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP----FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.++++.|...+++.++++|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344456688888888888772 222 3344556777888888888888888888888887654
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.12 E-value=0.24 Score=39.85 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcc--------------cccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC----
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMK--------------PEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM---- 585 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 585 (668)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555554332 11133445555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHH
Q 005943 586 PFKPDKTIWASMLK 599 (668)
Q Consensus 586 ~~~p~~~~~~~l~~ 599 (668)
+++-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 23333444544444
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.98 E-value=0.62 Score=37.99 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=59.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ 571 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 571 (668)
.....+.|++++|.+.|+.+..+ .+.. ...-..++.++.+.+++++|...+++..+-+--.|+ .-|...+.++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 33445567777777777777665 1211 234555666777777777777777777643222222 234444444333
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 572 AGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
-...+. .|..+ .... ..+....|..-|+.+++..|++.
T Consensus 95 ~~~~~~---~~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEG---SLQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhh---HHhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 11111 1111 12235578888888888888874
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.90 E-value=1.3 Score=45.41 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=95.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCChhHH
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNE-----ITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPHLEHY 562 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~ 562 (668)
.++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444455566666666665544421 21111 123333333332 45677788888888743 5665555
Q ss_pred HH-HHHHhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH-HHHH
Q 005943 563 YC-MVDLLGQAGCFDDAEQLIAEMPF-K-----PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM-LSNV 634 (668)
Q Consensus 563 ~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 634 (668)
.. -.+.+...|+.++|.+.|++.-. . .....+.-+...+.-..++++|...+.++.+...-+..+|.- .+-.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 43 34566777888888888886521 1 122334445555667788999999898888877666655553 4444
Q ss_pred HHhcCCh-------hhHHHHHHHHHh
Q 005943 635 YATLGMW-------DSLSKVRKAGKK 653 (668)
Q Consensus 635 ~~~~g~~-------~~a~~~~~~~~~ 653 (668)
+...|+. ++|.+++++...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6677887 778888777654
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=0.31 Score=44.32 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYC 564 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 564 (668)
.|+.-+.. .+.|++..|...|...++.. |+. ..+-.|..++...|++++|..+|..+.+++.-.|. +..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 35544443 34556777777777776642 221 23555666777777777777777777665444443 466666
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
|..+..+.|+.++|...|+++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 666777777777777777666
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.63 E-value=0.41 Score=48.29 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHHHhc--cCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 005943 465 DMYLKCGEIDDGLALFK--FMP-ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEE 541 (668)
Q Consensus 465 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 541 (668)
+...-.++++++.++.. ++. .-.....+.++.-+-+.|..+.|+++.++-. .-.....+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34445678888655543 111 1123447777888888888888887653321 12334457888888
Q ss_pred HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 542 AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
|.++.++. ++...|..|.+...+.|+++-|.+.+++.+ -|..++-.|...|+.+.-.++.+.+....
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87764433 356788999999999999999999998886 26667777777888877666665555433
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
- +.....++.-.|+.++..++|.+.
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 233333455668888888887654
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.45 E-value=5.3 Score=39.54 Aligned_cols=150 Identities=9% Similarity=0.003 Sum_probs=72.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHhcccc-cCCCCChhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP---NEITFLGVLSACRHAGLVEEAWTIFTSMKPE-YGLEPHLEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~ 562 (668)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-....-..|+..+|...++..... ..-..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34456666677777777777777777666532111 1222222334445566666776666665541 1101011111
Q ss_pred HHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 563 YCMVDLLGQAGCFDDAEQL-IAEMPFKPDKTIWASMLKACETH------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
..+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 00000000011222222223333 7888899999999999999888998888877
Q ss_pred Hhc
Q 005943 636 ATL 638 (668)
Q Consensus 636 ~~~ 638 (668)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 655
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=7.3 Score=40.50 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHI 310 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 310 (668)
+....-.+.+++...|.-++|.+.|-+. ..| .+.+..|...++|.+|.++-+..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~------s~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR------SLP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc------cCc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777777777777777776655 223 24456677777777777665543
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=94.39 E-value=0.64 Score=38.89 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+...|++++|..+|+-+.-.+ .-|..-+..|..++-..++++.|...|.....- . .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 345566666666666555432 112233444444555556666666665554421 1 1233334445566666666666
Q ss_pred HHHHHHhCC
Q 005943 578 AEQLIAEMP 586 (668)
Q Consensus 578 A~~~~~~~~ 586 (668)
|...|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 666665553
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.12 E-value=0.16 Score=29.62 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34455555666666666666666666666653
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.04 E-value=0.094 Score=33.00 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|.++..++.+|.+.|++++|+++++++.+..+.++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 35788999999999999999999999999877443
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=93.90 E-value=2.2 Score=42.36 Aligned_cols=143 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred ChHHHHHHhccCC---C--CC-HhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 472 EIDDGLALFKFMP---E--RD-VVSWTGIIVGCGQN---------GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 472 ~~~~A~~~~~~~~---~--~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
..+.|..+|.+.. . |+ ...|..+..++... .+..+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898877 3 33 44565555544322 24556778888888864 55677777777777888
Q ss_pred CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhhCCHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAE-MPFKPDK---TIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~---~~~~~l~~~~~~~~~~~~a~ 611 (668)
++.+.|...|++.. .+.|| ...|........-.|+.++|.+.+++ +...|.. ......+..|+.+ -.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999988 67887 55666666677778999999999998 4666643 3344444456554 567777
Q ss_pred HHHHHHHh
Q 005943 612 IIAEQLLA 619 (668)
Q Consensus 612 ~~~~~~~~ 619 (668)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.85 E-value=1.8 Score=35.96 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHhhcc
Q 005943 202 VTLTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
.....+++.|.+.+.++++.-++..+
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 33444566666666666666666554
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=2.4 Score=39.62 Aligned_cols=176 Identities=9% Similarity=0.018 Sum_probs=109.5
Q ss_pred hcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHhhcCCCHHH
Q 005943 469 KCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLG----VLSACRHAGLVEE 541 (668)
Q Consensus 469 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~ 541 (668)
-.|+..+|-..++++.+ .|..++.-.=.+|..+|+.+.-...+++.... ..|+..+|.. +.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666777664 36677777778888888888888888887764 2455443332 2334567888888
Q ss_pred HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPD------KTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
|++.-++.. .+.| |.-.-.+....+.-.|++.++.+++.+-...-+ ...|....-.+...+.++.|+++|
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 888877766 3333 566677778888888888999888877642211 112222222344567888888888
Q ss_pred HHHH--hcCCCCchhHH---HHHHHHHhcCChhhHHHHH
Q 005943 615 EQLL--ATSPEDPSKYV---MLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 615 ~~~~--~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 648 (668)
++-+ ++..+|..... .+-.+...+-.+.+-.++-
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 7733 35566653332 3333444444444444333
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.76 E-value=0.14 Score=29.85 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666667777777777777777776665
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.75 E-value=5.3 Score=36.43 Aligned_cols=190 Identities=14% Similarity=0.112 Sum_probs=120.8
Q ss_pred HHhccccchHhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH-hHHHHHHH-HHHhcCCh
Q 005943 430 KVCSCLASLRRGKQVHAFCVKR-GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV-VSWTGIIV-GCGQNGRA 504 (668)
Q Consensus 430 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~ 504 (668)
..+...+....+...+...... ........+......+...+++..+...+..... ++. ........ .+...|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH
Confidence 3333344444444443333321 1233344455555556666667777777666554 221 22222233 67888999
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHH
Q 005943 505 KEAIAYFQEMIQSRLKP----NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
+.|...+++... ..| ....+......+...++.+.+...+...... ... ....+..+...+...++++.|.
T Consensus 147 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 147 EEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred HHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHH
Confidence 999999998855 333 2334444444567788999999999888742 223 3677888888889999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 580 QLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 580 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
..+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 223 EYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 988877 34444 445555555555777899999999999998887
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=12 Score=39.95 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=70.5
Q ss_pred chHHHHHHHHcCCChhHHHHhhhhcCCCChhH----HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 005943 40 TGNNLLSMYADFTSLNDAHKLFDEMARKNIVS----WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC 115 (668)
Q Consensus 40 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 115 (668)
....-|..+.+...++.|..+-+.-.- +... ......-+-+.|++++|...|-+-... ..| ..++.-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHh
Confidence 345567777777788888777655432 2222 223333456788999998777554432 112 3456666
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh
Q 005943 116 SLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT 157 (668)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 157 (668)
........-...++.+.+.|+. +...-..||.+|.+.++.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 6777777777888888888864 4555667888888888766
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=13 Score=39.79 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
-++..+.+..+.+.+..+.+..+.. ++..|..++..+++.+..+.-.+...++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3455566666777777777777533 677777788877777765555555444444
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.13 E-value=8 Score=36.65 Aligned_cols=17 Identities=12% Similarity=-0.230 Sum_probs=10.7
Q ss_pred HHhhCCHHHHHHHHHHH
Q 005943 601 CETHNNTKLVSIIAEQL 617 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~ 617 (668)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566777777766644
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.00 E-value=5.6 Score=40.92 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=75.0
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHhccCCCC-------CHhHHHHHHHHHHhcCChHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLT-SLIDMYLKCGEIDDGLALFKFMPER-------DVVSWTGIIVGCGQNGRAKE 506 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~ 506 (668)
..+.+.+.++++.+.+. -|+...+. .-...+...|++++|++.|++.... ....+--+.-.+....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777777777665 34544443 2346667789999999999975531 22334455666778889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCH-------HHHHHHHHhcc
Q 005943 507 AIAYFQEMIQSRLKPNEITFLGVLSA-CRHAGLV-------EEAWTIFTSMK 550 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-------~~a~~~~~~~~ 550 (668)
|.+.|..+.+.. .-+..+|..+..+ +...|+. ++|.++|.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999853 3344555555543 3456666 77777777664
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.91 E-value=0.19 Score=29.84 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888999999999999888844
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.90 E-value=17 Score=40.59 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
-...|+.++...|+.+.|.++-+...+
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456677788899999998887655543
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.83 E-value=0.83 Score=38.08 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=48.4
Q ss_pred hHHHHHHHHh---hhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 560 EHYYCMVDLL---GQAGCFDDAEQLIAEM-PFKPDKTIWASML-KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 560 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
.+...|++.+ .+.++.+++..+++.+ ...|.......+- ..+.+.|++.+|..+++.+.+..|..+..-..++..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444444433 4556777777777776 2445443333222 224577778888888888777777766666666666
Q ss_pred HHhcCC
Q 005943 635 YATLGM 640 (668)
Q Consensus 635 ~~~~g~ 640 (668)
+...||
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 666665
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.83 E-value=0.37 Score=38.00 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=52.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..++...|+.+.|++.|.+++.+-|..++.|..-+.++.-.|+.++|..-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 345778999999999999999999999999999999999999999999999988775
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.75 E-value=0.47 Score=40.59 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=80.2
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACET 603 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 603 (668)
.-+.+.|++++|..-|.+... -+++. ...|..-..++.+.+.++.|++--.+. .+.|. .....--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 347789999999999998884 33333 234555556778888888888776655 44442 2222223345778
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH--HHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS--KVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~~~ 656 (668)
..+++.|++=|+++++.+|....+-...+++--......+.. +++.++++.|-
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999988766666665543333333332 34555555543
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.64 E-value=7.8 Score=35.24 Aligned_cols=83 Identities=13% Similarity=-0.052 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005943 248 FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALK 327 (668)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 327 (668)
..+..-+..-.+.|++++|.+.|+.+..+....+-...+--.++.++.+.++++.|+..+++....-..-...-|..-|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 33444444567789999999999999763222212333445566788899999999999999776533223334444455
Q ss_pred HHH
Q 005943 328 ACI 330 (668)
Q Consensus 328 ~~~ 330 (668)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 544
No 271
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.64 E-value=0.86 Score=43.69 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=83.8
Q ss_pred HHHHHHHHhccccchHhHHHHHHHH----HHhCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCC-------CC--CHh
Q 005943 424 IISSVLKVCSCLASLRRGKQVHAFC----VKRGFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMP-------ER--DVV 489 (668)
Q Consensus 424 ~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~--~~~ 489 (668)
.|..+-+.|.-.|+++.|....+.- .+.|-. .....+..+.+++.-.|+++.|.+.|.... .. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555666678888888775532 233422 233466778888888899999988877533 22 234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQ----SR-LKPNEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
+..+|..+|.-..++++|+.++.+-+. .+ .--....+.+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556677888888888899888765432 11 11233567888889999999888887765443
No 272
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.59 E-value=3.5 Score=41.73 Aligned_cols=104 Identities=21% Similarity=0.280 Sum_probs=69.2
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhH
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 441 (668)
-.+...++|+++.|.++.+++. +...|..|.....+.|+++-|.+.|.+..+ +..++-.|.-.|+.+..
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455678899999999887776 667899999999999999999999987642 44555555666666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
.++.+.....|. ++....++.-.|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666555541 34444445555666666665544
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=1.1 Score=41.84 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=118.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhH----HHHHHHHhhhcCC
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEH----YYCMVDLLGQAGC 574 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~ 574 (668)
.-+|+..+|-..|+++.+. .+.|...+...=++|...|+.+.-...++++... ..||... -..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999886 5667778888888999999999999999998853 3455433 3455567779999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCChhhHHHHH
Q 005943 575 FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED----PSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 575 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+++|.+.-++. .+.| |.-.-.++...+...|+.+++.++..+-...-... ...|-..+..+.+.+.++.|.+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 4443 55556667777888999999999888765533321 223446677888999999999999
Q ss_pred HHHHhcCC-CCCc
Q 005943 649 KAGKKLGE-KKAG 660 (668)
Q Consensus 649 ~~~~~~~~-~~~~ 660 (668)
++=.-+.+ ++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 88766555 5544
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.49 E-value=4.6 Score=32.25 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
...+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.+.-++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34455566666666666666666543 2556666666666777777777776666665543
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.45 E-value=5.4 Score=33.85 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred hhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHH
Q 005943 187 QVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEA 266 (668)
Q Consensus 187 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A 266 (668)
..++.+.+.|+.|+...|..+|+.+.+.|++....++++.-.-+|..+....+-....-++.+ ..-|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~-------------~Ql~ 81 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPA-------------YQLG 81 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHH-------------HHHH
Confidence 455566778999999999999999999999999999888777666555433332211111111 2234
Q ss_pred HHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Q 005943 267 RKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGL 346 (668)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 346 (668)
.+.+.++. ..+..++..+...|++-+|+++.+..... +...-..++.+....++. ..-..++..
T Consensus 82 lDMLkRL~----------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~--~lf~~V~~f 145 (167)
T PF07035_consen 82 LDMLKRLG----------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD--QLFYAVFRF 145 (167)
T ss_pred HHHHHHhh----------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 44444442 13567778889999999999988775332 122224567777777766 555566655
Q ss_pred HHHhC
Q 005943 347 IVTSG 351 (668)
Q Consensus 347 ~~~~~ 351 (668)
....+
T Consensus 146 f~~~n 150 (167)
T PF07035_consen 146 FEERN 150 (167)
T ss_pred HHHhh
Confidence 55543
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=2.4 Score=35.57 Aligned_cols=130 Identities=12% Similarity=0.160 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh-HHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE-HYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 565 (668)
...|..-+. +.+.+..++|+.-|..+.+.|...-+. .-.-........|+...|...|.++-.+ ...|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARl 136 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARL 136 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHH
Confidence 345555444 356678899999999999876543332 2223334567889999999999999865 3333221 11112
Q ss_pred --HHHhhhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 566 --VDLLGQAGCFDDAEQLIAEMPFK--P-DKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 566 --~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.-++...|.+++...-++-+... | -...-.+|.-+-.+.|++..|...|+.+..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456788898888888877322 2 233446677777899999999999999877
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.15 E-value=11 Score=35.76 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHcCCCHHHH---HHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEA---RKLFDQYSSWAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTF 322 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 322 (668)
..+...++.+|...+..+.. .++++.+.. ..|+ ...+-.-+..+.+.++.+.+.+++.+|...- ......|
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~----e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES----EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchH
Confidence 45777888889888876654 445555532 3344 4445555777777899999999999998863 2234555
Q ss_pred HHHHHHHHhccccchHHHHHHHHHHHHhCCCCccc
Q 005943 323 TSALKACINLLNFNSRFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 323 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (668)
..++..+....+.+...+...+..+....+.|...
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55555554444433356666666666655555443
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.14 E-value=0.97 Score=36.94 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=18.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
...|++.+|..+++++.+..+..+..-..++..+.-+||
T Consensus 55 i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 55 IARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 345555555555555555444443333344444444443
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.03 E-value=4.2 Score=34.01 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChh-HHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLE-HYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
..++.+.+..++..+. -+.|... .-..-...+.+.|++.+|..+|+++
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555554444 3344321 1112223334445555555555555
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.94 E-value=6.1 Score=39.53 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
.+..++.+.|+.++|.+.++++ +..| +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445555555555555555555 2112 12234445555555555555555555543
No 281
>PRK09687 putative lyase; Provisional
Probab=91.82 E-value=12 Score=35.47 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=53.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-CHHHHHHHHHhcccccCCCCChhHHHH
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG-LVEEAWTIFTSMKPEYGLEPHLEHYYC 564 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~ 564 (668)
++...-...+.++.+.++ +.++..+-.+.+ .++...-...+.++.+.+ +.+.+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 333444444444444443 334444444443 233333333333333322 12334444444432 344555555
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.+.++++.|+. .|...+-+.-..++ .....+.++...|+. +|...+..+.+.+|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 55556555553 33333322211222 223455555555554 45555666555555
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.80 E-value=7.6 Score=38.42 Aligned_cols=51 Identities=2% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHcCCChhHHHHhhhhcCCC--ChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 45 LSMYADFTSLNDAHKLFDEMARK--NIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 45 l~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..+..+.|+++...+........ +...|..+... +.++++++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 34556677777766666665542 33344444333 67777777777766654
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.37 E-value=0.37 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.++..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4788999999999999999999999887654
No 284
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.25 E-value=0.56 Score=39.19 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=63.4
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhh
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 87 (668)
.++..+.+.+.++...++++.+.+.+...++...+.++..|++.++.+...++++.... .-...+++.|.+.|-++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677888899999999999999888667788899999999999999999999885443 233445555566666666
Q ss_pred HHHHHHHHH
Q 005943 88 AIRLYNHML 96 (668)
Q Consensus 88 a~~~~~~m~ 96 (668)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666555543
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.92 E-value=1.2 Score=41.20 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++..++..+...|+.+.+...++++...+|-+...|..+..+|...|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666666666666654
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.63 E-value=0.63 Score=43.39 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 605 (668)
-..-|.+.|.+++|+..|.... .+.| +..++..-..+|.+..++..|..--...- .+.-...|.--+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556888999999999998877 5567 77888888888888888876665444331 0111223444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHH
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
+..+|.+=++.++++.|.+...-.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 888888888888899998654433
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.58 E-value=0.48 Score=28.13 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+|..+...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777778888888888888888554
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.50 E-value=6.5 Score=37.40 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=54.6
Q ss_pred hHHHHHHHccCCCC-------ChhhHHHHHHHHHhcCCc----HHHHHHHHHHHHcCCCCcHH--HHHHHHHHhccccc-
Q 005943 372 VKSALELFHRLPKK-------DVVAWSGLIMGCTKHGLN----SLAYLLFRDMINSNQDVNQF--IISSVLKVCSCLAS- 437 (668)
Q Consensus 372 ~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~- 437 (668)
...|..+++.|.+. +-.++..++.. ..++. +.+..+|+.+.+.|+..+.. ..+.++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34456666666542 22334444332 22332 46778888888878665543 44444444433322
Q ss_pred -hHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 438 -LRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 438 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
..++..+++.+.+.|+++....|..+.-
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4578888899999999888887766543
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.93 E-value=26 Score=36.14 Aligned_cols=384 Identities=13% Similarity=0.091 Sum_probs=215.7
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCee-eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVA-LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+...++.++.---...+++.+..+++.+.. ..|-.. -|......-.+.|..+.+.++|++-+. |++-+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~----kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS----KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh----hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 344555555555555556777777777754 444432 344455555678889999999998876 35555555655
Q ss_pred HHHHHHh-ccccchHHHHHHHHHHHHh-CCCC-ccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh--
Q 005943 325 ALKACIN-LLNFNSRFALQVHGLIVTS-GYEL-DYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK-- 399 (668)
Q Consensus 325 ll~~~~~-~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-- 399 (668)
.+..+.. .|+. +.....|+..... |... ....|...|.--..++++.....+++++.+-....++.....|.+
T Consensus 119 Y~~f~~n~~~d~--~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 119 YLAFLKNNNGDP--ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHHHhccCCCH--HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Confidence 5554444 3333 6677777776653 4433 445677777777888899999999998887554444444433322
Q ss_pred -c------CCcHHHHHHHHHHHHc----CCCCcHHHHHHHHHHhcc-ccchHhHHHH-----------------------
Q 005943 400 -H------GLNSLAYLLFRDMINS----NQDVNQFIISSVLKVCSC-LASLRRGKQV----------------------- 444 (668)
Q Consensus 400 -~------~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~-~~~~~~a~~~----------------------- 444 (668)
. ...+++.++-...... ...+........+.-... .+..+.+..+
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 1223333322222210 001111111111111111 1111111111
Q ss_pred -HHHHHHh---CCC----CchhHHHHHHHHHHhcCChHHHHHHhccCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 445 -HAFCVKR---GFE----KEDITLTSLIDMYLKCGEIDDGLALFKFMPERD---VVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 445 -~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
++.-.+. .++ +...+|..-+..-.+.|+.+.+.-+|+...-|= ...|-..+.-....|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 1111111 111 233456666666677788888877777766541 12344444444445788877777766
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHH---HHHHhC-CCC
Q 005943 514 MIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAE---QLIAEM-PFK 588 (668)
Q Consensus 514 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~ 588 (668)
..+-.++-.+.+-..-..-+-..|+.+.|..+++.+..+ . |+ ...-.--+....+.|+.+.+. +++... ..+
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 665433222222222222245578999999999999864 3 65 333334456667888888887 555444 222
Q ss_pred CCHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 589 PDKTIWASMLKA-----CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 589 p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
-+..+...+..- +.-.++.+.|..++.++.+..|++...|..+.......+
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222222222221 345679999999999999999999999999988877665
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=58 Score=39.89 Aligned_cols=282 Identities=9% Similarity=-0.008 Sum_probs=146.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHcc-CCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Q 005943 358 VGSNLIDLYARLGNVKSALELFHR-LPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA 436 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 436 (668)
.+..+...|...+++|....+... ..++ ..+ .-|.-....|++..|...|+.+.+.+ ++...+++-++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~--sl~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP--SLY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc--cHH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 344455578888888877776653 2222 222 23334556788999999999887654 233556666666666666
Q ss_pred chHhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHH--HHHHHhcC--ChHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDIT-LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGI--IVGCGQNG--RAKEAIAYF 511 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~ 511 (668)
.++.+....+-..... .+.... ++.=+.+--+.++++....... +.+...|... .....+.. +.-.-....
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6666655444333222 222222 2222444456677776666655 3334444333 23332222 111111233
Q ss_pred HHHHHCCCCC--------C-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC------hhHHHHHHHHhhhcCChH
Q 005943 512 QEMIQSRLKP--------N-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH------LEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 512 ~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~ 576 (668)
+.+.+.-+.| + ...|..++....-..- +.-.+.+. ++.++ ..-|..-+..-....+..
T Consensus 1574 ~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1574 ENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHH
Confidence 3333321111 1 1234444333221111 11111111 22232 111211111111111111
Q ss_pred HHHHHHHh----CCCCC-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 577 DAEQLIAE----MPFKP-----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 577 ~A~~~~~~----~~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
+-.--+++ ....| -..+|-.....+...|+++.|....-.+.+..+ +.++...++.+.+.|+-..|..+
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~ 1724 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSV 1724 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHH
Confidence 11111111 11222 345788888888899999999988888877664 46899999999999999999999
Q ss_pred HHHHHhcCC
Q 005943 648 RKAGKKLGE 656 (668)
Q Consensus 648 ~~~~~~~~~ 656 (668)
++...+...
T Consensus 1725 Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1725 LQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhc
Confidence 999987655
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.72 E-value=0.72 Score=26.74 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
|..+...+...|++++|...|+++.+..|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444455555555555555555444
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.63 E-value=0.66 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4788999999999999999999999887654
No 293
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.16 E-value=0.52 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888775
No 294
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.95 E-value=37 Score=36.61 Aligned_cols=91 Identities=12% Similarity=-0.144 Sum_probs=48.1
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChh
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS---PEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 642 (668)
+..+...|...+|...+..+....+......+.....+.|..+.++.........+ -.-|..|...+..+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777665323444555555555566777777766665433211 011224555555555555556
Q ss_pred hHHHHHHHHHhcCC
Q 005943 643 SLSKVRKAGKKLGE 656 (668)
Q Consensus 643 ~a~~~~~~~~~~~~ 656 (668)
.+.-+----++.++
T Consensus 494 ~~lv~ai~rqES~f 507 (644)
T PRK11619 494 QSYAMAIARQESAW 507 (644)
T ss_pred HHHHHHHHHHhcCC
Confidence 55543333334444
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.90 E-value=66 Score=39.44 Aligned_cols=368 Identities=15% Similarity=0.117 Sum_probs=181.6
Q ss_pred HHHHHHHhCCChHHHHHHhhcc----CCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHH-hhhhhhcC
Q 005943 206 SLIDMYLKCGEIDDGLALFNFM----PERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQ-YSSWAASA 280 (668)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~ 280 (668)
++..+=.+++.+.+|+..++.- .+.+. ....+-.+...|+.-+++|....+... . .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~-------------~e~l~fllq~lY~~i~dpDgV~Gv~~~r~------a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET-------------EEALYFLLQNLYGSIHDPDGVEGVSARRF------A 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH-------------HHHHHHHHHHHHHhcCCcchhhhHHHHhh------c
Confidence 4555667889999999999883 22221 233444555589999998888777763 3 2
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccch-
Q 005943 281 YGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCID-SYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIV- 358 (668)
Q Consensus 281 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 358 (668)
.|+ ...-|......|++..|...|+.+.+.+ |+ ..+++-++......+.+ ....-..+.... ...+....
T Consensus 1449 ~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l--~t~i~~~dg~~~-~~se~~~~~ 1520 (2382)
T KOG0890|consen 1449 DPS---LYQQILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHL--STEILHLDGLII-NRSEEVDEL 1520 (2382)
T ss_pred Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccch--hHHHhhhcchhh-ccCHHHHHH
Confidence 222 2334555677899999999999998764 44 56677666666666665 333322111111 11111222
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHH--HHHHHhcCCcH--HHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGL--IMGCTKHGLNS--LAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
++.=+.+--+.++++..+..+. ..+...|.+. .....+...-+ .-.+..+-+.+.- ..-+.+|+.
T Consensus 1521 ~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~--------i~~lsa~s~ 1589 (2382)
T KOG0890|consen 1521 NSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV--------IENLSACSI 1589 (2382)
T ss_pred HHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh--------hhhHHHhhc
Confidence 2222344456677777776655 4444455443 22222222111 1112222222111 011112222
Q ss_pred ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCChHHHHH
Q 005943 435 LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-----DVVSWTGIIVGCGQNGRAKEAIA 509 (668)
Q Consensus 435 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 509 (668)
.|.+. ..|..++....-..- +.-.+.+...... +..-|..-+..-....+..+-+-
T Consensus 1590 ~~Sy~------------------~~Y~~~~kLH~l~el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epIL 1650 (2382)
T KOG0890|consen 1590 EGSYV------------------RSYEILMKLHLLLEL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPIL 1650 (2382)
T ss_pred cchHH------------------HHHHHHHHHHHHHHH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHH
Confidence 22111 233333333322211 1111111111110 11112111111110111111111
Q ss_pred HH-HHHHHCCCCCC-----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHH
Q 005943 510 YF-QEMIQSRLKPN-----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIA 583 (668)
Q Consensus 510 ~~-~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 583 (668)
.+ +.+......|+ ..+|....+...++|.++.|...+-...+. . -...+...++.+...|+...|+.+++
T Consensus 1651 a~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--r--~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1651 AFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--R--LPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred HHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--c--cchHHHHHHHHHHhhccHHHHHHHHH
Confidence 11 11222111222 246888888888899999998876666532 2 34556667888889999999999888
Q ss_pred hC-----C-----CCCCHHHHHHHHHH--------H-HhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 584 EM-----P-----FKPDKTIWASMLKA--------C-ETHNN--TKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 584 ~~-----~-----~~p~~~~~~~l~~~--------~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
+. + .++.+..-+..+.. | ...++ .+..+..|.++.+..|.....+..++..
T Consensus 1727 ~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1727 EILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 65 1 11111222222211 1 12333 3446678888888888766677666643
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.89 E-value=35 Score=37.10 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=93.2
Q ss_pred HhcCChHHHHHHhccCC----CCCH-------hHHHHHHH-HHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 005943 468 LKCGEIDDGLALFKFMP----ERDV-------VSWTGIIV-GCGQNGRAKEAIAYFQEMIQS----RLKPNEITFLGVLS 531 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~----~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 531 (668)
....++.+|..++.+.. .|+. ..|+.+-. .....|+++.|+.+.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777766665443 2221 13443322 234557778888877776653 12233345666667
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHH---H--HHHhhhcCC--hHHHHHHHHhC-----CCCC----CHHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYC---M--VDLLGQAGC--FDDAEQLIAEM-----PFKP----DKTIWA 595 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---l--~~~~~~~g~--~~~A~~~~~~~-----~~~p----~~~~~~ 595 (668)
+..-.|++++|..+.+...+. .-.-+...+.. + ...+...|+ +.+....+... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788888888776665532 22223332222 2 234455663 22222223222 1111 223334
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHh----cCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLA----TSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+..++.+ .+.+..-.....+ ..|... ..+..|+.++...|+.++|...+.++.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 44444433 3333332222222 222221 1223677788888888888888888876655
No 297
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=21 Score=33.73 Aligned_cols=78 Identities=8% Similarity=-0.074 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCCh----hHHHHHHHHHHhCCCCCCHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQN----EEAITLLSHIHSSGMCIDSYT 321 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~t 321 (668)
+..+....+..+...|..+-...+..-+ ..+|...-...+.++.+.|+. .++...+..+... .|+...
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll------~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELC------SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHH------hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3444445555555555433222222222 223333334445555555542 3455555555322 244444
Q ss_pred HHHHHHHHHh
Q 005943 322 FTSALKACIN 331 (668)
Q Consensus 322 ~~~ll~~~~~ 331 (668)
-...+.++..
T Consensus 108 R~~A~~aLG~ 117 (280)
T PRK09687 108 RASAINATGH 117 (280)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.84 E-value=0.75 Score=28.74 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 629 VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 629 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|+.+|...|+.+.|+++++++...|.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4688999999999999999999886543
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.83 E-value=15 Score=31.89 Aligned_cols=129 Identities=10% Similarity=-0.005 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhcCCCHHHHHHHHHhcccccCCCCCh----hHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL--GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL----EHYY 563 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~ 563 (668)
.|..++.+.. .+.. +.....+++....-....-.+. .+...+...|+++.|..-++..... +.|. ..-.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444554443 2333 5555556666542121222222 2344677888999998888876632 2221 2223
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
.|.+.....|.+++|+..++....+ -.......-..++...|+-++|+..|+++++..++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 4556778889999999998877422 12222333445688889999999999998887644
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.76 E-value=14 Score=31.35 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=73.2
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HhhcCCC
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIV-----GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS---ACRHAGL 538 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~ 538 (668)
+.+.+..++|+.-|..+.+.+.-.|..|.. ...+.|+...|...|++.-.-.-.|-..--..-++ .+..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 346677788888887777765555554432 34567788888888887766433333321111122 3456777
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
++....-.+.+..+ +-+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77777777776643 33334455566666777888888888887766
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.64 E-value=0.99 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=11.5
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
++.+.|++++|.+.++++++..|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555444443
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.38 E-value=3.7 Score=38.18 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHS-----SGMCIDSY 320 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 320 (668)
..++..++..+...|+.+.+.+.++++.. ..| +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 45677888899999999999999999966 444 778899999999999999999999998865 47777765
Q ss_pred HHHHHHHH
Q 005943 321 TFTSALKA 328 (668)
Q Consensus 321 t~~~ll~~ 328 (668)
+.......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 55443333
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.26 E-value=4.3 Score=37.74 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=77.0
Q ss_pred hcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC-CChh-----HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCC
Q 005943 32 YGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR-KNIV-----SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNG 105 (668)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 105 (668)
.|.+.++.+-..++.......+++++..++=+++. |+.+ +-.++++.+.+ -++++++.++..=.+.|+. ||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF-~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIF-PDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccc-cch
Confidence 34455566666666666667788999888877753 3222 23345565554 4778999999999999999 999
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 005943 106 FMYSAVLKACSLSGDLDLGRLIHERITREK 135 (668)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 135 (668)
.+++.+|..+.+.++..+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877653
No 304
>PRK10941 hypothetical protein; Provisional
Probab=88.23 E-value=3 Score=38.82 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+..-+.+|.+.|.+..|..=++...+.-+.+|
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 455666788999999999999999999999999999999999999999999998888877766444
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.21 E-value=7.5 Score=33.73 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI--TFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
.+..-|.+.|+.+.|++.|.++.+.-..|... .+..+++.....+++..+...+.+.
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444444444432222221 2333444444444444444444433
No 306
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.16 E-value=35 Score=36.67 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCC
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-------NEEAITLLSHIHSSGM 315 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~ 315 (668)
.+|-.+.++|++++|.++....... .......+-..+..+....+ -++...-|++......
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~---~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ---FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG---S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh---hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5677799999999999999554332 33444556666777765422 2344555555554433
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.55 E-value=1.2 Score=25.73 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.+|..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999987643
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.43 E-value=4.6 Score=34.84 Aligned_cols=95 Identities=7% Similarity=-0.011 Sum_probs=68.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASML-----KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
.+...+..+|++++|..-++..-..|....+..++ ......|.++.|...++......- .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 34567889999999999998764344444444443 446678899988888776543221 123456778999999
Q ss_pred CChhhHHHHHHHHHhcCCCCC
Q 005943 639 GMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~~~~ 659 (668)
|+.++|+.-++.....+..++
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred CchHHHHHHHHHHHHccCChH
Confidence 999999999999988764333
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.27 E-value=4 Score=40.23 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=75.7
Q ss_pred HhcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 499 GQNGRAKEAIAYF-QEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 499 ~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
...|+.-.|-+-+ .-+....-.|+..... ...+...|+++.+...+..... -+.....+...+++.+.+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666655443 3344433344443332 3345677888888777776653 233455667777777788888888
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 578 AEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 578 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
|...-..| +.+ .+..............|-++++.-.|+++..+.|+....+..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 88777766 211 233333333333455677788888888888877665544443
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.15 E-value=47 Score=35.74 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCC-------hHHHHHHHHHHHHcCC
Q 005943 71 SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGD-------LDLGRLIHERITREKL 136 (668)
Q Consensus 71 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~ 136 (668)
.|. +|-.|.|+|++++|.++........ . .....|...+..+....+ -+....-++...+...
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~-~-~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQF-Q-KIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhh-c-chhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 443 5566789999999998886655543 3 556778888888876532 2344455555554433
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.10 E-value=0.93 Score=25.94 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++..++.++.+.|++++|.++++++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567889999999999999999999987643
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=22 Score=31.86 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 005943 605 NNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~ 623 (668)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555555666666666665
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.96 E-value=9.1 Score=34.39 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=10.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
-..+|...+++++|..-+.+..
T Consensus 37 AAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHH
Confidence 3444445555555555444443
No 314
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.83 E-value=26 Score=32.38 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=25.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
+.+...+.+++++|+..+.++...|+..+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 445566788899999999999988887766543
No 315
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.66 E-value=8.7 Score=33.30 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=66.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPNE-----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDL 568 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 568 (668)
..-+..+|++++|..-|.+.++. ++|.. ..|..-..++.+.+.++.|+.-..... .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 45578899999999999998885 33322 246666667888999999988777766 45554 3333344568
Q ss_pred hhhcCChHHHHHHHHhC-CCCCCHH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKPDKT 592 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p~~~ 592 (668)
|.+..++++|++-++++ ...|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 88888999999888887 4455543
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=3.7 Score=38.14 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 005943 452 GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-RDV-----VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 452 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 525 (668)
|.+.+..+...++..-....+++.++..+-++.. |+. .+-...++.+.+ -+.++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 4444555555555555555666666666655543 211 011122222222 255677777777777778888888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhccc
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKP 551 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 551 (668)
++.+++.+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888887777776666553
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.47 E-value=7 Score=33.92 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPER------DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
..+..+.+.|++.|+.+.|.+.|.++.+. -...+-.+|+.....+++..+...+.+....--.+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45778889999999999999999998763 234567788888899999999988887765422222121111111
Q ss_pred -----HhhcCCCHHHHHHHHHhcccc
Q 005943 532 -----ACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 532 -----~~~~~g~~~~a~~~~~~~~~~ 552 (668)
++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 234567777777777666543
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.44 E-value=26 Score=32.02 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=135.7
Q ss_pred hcCChHHHHHHHccCCC----C---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHhccc
Q 005943 368 RLGNVKSALELFHRLPK----K---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS---N--QDVNQFIISSVLKVCSCL 435 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~ll~~~~~~ 435 (668)
+...+++|+.-|+.+.+ + .-.+...++..+.+.+++++..+.|++|..- . -.-+..+.+.++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567778777776543 2 2234566788888899999888888887531 1 123445666776666655
Q ss_pred cchHhHHHHHHHH----HHhC-CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--------C-------CHhHHHHHH
Q 005943 436 ASLRRGKQVHAFC----VKRG-FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--------R-------DVVSWTGII 495 (668)
Q Consensus 436 ~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~-------~~~~~~~l~ 495 (668)
.+.+....+++.- .+.. -..-..+-+.|...|...+++.+...++.++.. . -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5555555444322 2211 011112334566777777777777777776542 1 134577778
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh-----hcCCCHHHHHH-HHHhccccc---CCCC--ChhHHH
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSR-LKPNEITFLGVLSAC-----RHAGLVEEAWT-IFTSMKPEY---GLEP--HLEHYY 563 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~-~~~~~~~~~---~~~p--~~~~~~ 563 (668)
..|...++-..-..++++...-. --|.+.. ..+|+-| .+.|.+++|.. +|+... .+ |-+. +.--|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHH
Confidence 88888888877788888766521 2344433 3344444 46678877754 333332 21 2211 123466
Q ss_pred HHHHHhhhcCC----hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 005943 564 CMVDLLGQAGC----FDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAE 615 (668)
Q Consensus 564 ~l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 615 (668)
.|.+.+.+.|- ..+|.- ....|.......++.+|.+. +..+-.+++.
T Consensus 277 VLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 67777777662 111110 02346666778888888544 5555333333
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.22 E-value=20 Score=30.53 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHc
Q 005943 341 LQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFH 380 (668)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 380 (668)
.+....+.+.+++|+...+..+++.+.+.|+......++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3444445556666666677777777766666665555444
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.12 E-value=54 Score=35.39 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=105.6
Q ss_pred hhhhhhhhcchhhHHHHH-HhCCCCC--hhhHHHHHHHHH-hCCChHHHHHHhhccCCCCc-chHHHHhhhcccCchhhH
Q 005943 176 ALWNSMLSGGKQVHAFCV-KRGFEKE--DVTLTSLIDMYL-KCGEIDDGLALFNFMPERDV-VSWTGIIVGCFECSCFTL 250 (668)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 250 (668)
..|..++..+.+.++.+. +..+.|. ..++-.+...+. ...+++.|...+++...... ..+..+ .-..-
T Consensus 31 ~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~-------k~~~~ 103 (608)
T PF10345_consen 31 KQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL-------KFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH-------HHHHH
Confidence 334444444555555555 3344443 334555666665 68899999999987651111 111100 12334
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCC--eeeHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHH
Q 005943 251 SALVDMYSNCNVLCEARKLFDQYSSWAASAYGN--VALWNSM-ISGYVLNEQNEEAITLLSHIHSSG---MCIDSYTFTS 324 (668)
Q Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~ 324 (668)
..++..+.+.+... |.+.+++..+...+..-+ ...+.-+ +.-+...+++..|.+.++.+...- ..|-...+..
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 46677788877777 888888865532221111 1122222 222223479999999998886642 3444555556
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCC---------CCccchHHHHHHHHH--hcCChHHHHHHHccC
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGY---------ELDYIVGSNLIDLYA--RLGNVKSALELFHRL 382 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 382 (668)
++.+.........+.+.+....+..... .|...++..+++.++ ..|+++.+...++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665544433556666555533222 223344555554443 456655665554443
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.98 E-value=4.9 Score=35.08 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=48.8
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC----CCCchhHHHHHHHHHhcCChhh
Q 005943 570 GQAGCFDDAEQLIAEMPFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATS----PEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
.+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++-+++++. ..|+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56666666663333 33333444444555668888888888888843 2357888888888888888887
Q ss_pred HH
Q 005943 644 LS 645 (668)
Q Consensus 644 a~ 645 (668)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.84 E-value=5.7 Score=30.06 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 585 MPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 585 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
+..-|++.+..+.+.+|.|-+|+..|.++++.+.....+....|..++.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3466899999999999999999999999999998866655546666553
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.74 E-value=18 Score=34.47 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCC----HHHHHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCCh
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRH--AGL----VEEAWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCF 575 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 575 (668)
+.+.+.+++.|.+.|++-+..+|.+....... ..+ ..+|..+|+.|++.+.+-- +..++.+++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888888777766553333222 222 4568888999987644332 23344444322 33333
Q ss_pred H----HHHHHHHhC---CCCC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcC-CCCchhHHHHHHHHHhcCChhh
Q 005943 576 D----DAEQLIAEM---PFKP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATS-PEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 576 ~----~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
+ ++..+++.+ ++.. |...+.+-+-++..... ...+.++++.+.+.. +-....|..++-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 333444433 3332 33334333333332221 346677777777743 3333345555543333333335
Q ss_pred HHHHHHHHHh
Q 005943 644 LSKVRKAGKK 653 (668)
Q Consensus 644 a~~~~~~~~~ 653 (668)
....+.++.+
T Consensus 236 ~~~~i~ev~~ 245 (297)
T PF13170_consen 236 IVEEIKEVID 245 (297)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.64 E-value=5.9 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 586 PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 586 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..-|++....+.+.||.|-+|+..|.++++.++.....+...|..+.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 46688888889999999999999999999888865544444555544
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.54 E-value=1.5 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888999999999999998888754
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.47 E-value=0.91 Score=37.90 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHH
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 507 (668)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566667777777777888877766566677888888888888777788777773332 2233455555555655555
Q ss_pred HHHHHH
Q 005943 508 IAYFQE 513 (668)
Q Consensus 508 ~~~~~~ 513 (668)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555444
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.43 E-value=14 Score=30.41 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=29.2
Q ss_pred HhCCChHHHHHHhhccC--CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 005943 212 LKCGEIDDGLALFNFMP--ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSS 275 (668)
Q Consensus 212 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 275 (668)
...++.+++..+++.|. .|+.. ..-..-...+...|++++|.++|+++.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~--------------e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLK--------------ELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCcc--------------ccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 34677777777777666 44422 2222233346667777777777777643
No 328
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=29 Score=31.15 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=52.5
Q ss_pred HHHHHhhhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhcCCCCch------hH
Q 005943 564 CMVDLLGQA-GCFDDAEQLIAEMP-----FKPDKTIWASMLK---ACETHNNTKLVSIIAEQLLATSPEDPS------KY 628 (668)
Q Consensus 564 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~ 628 (668)
.+...|... .++++|+..++... ...+...-.+++. .-...+++.+|+.+|+++....-+++. -|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 445555443 56666666666551 1122222223333 345678999999999998874433321 12
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 629 -VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 629 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..-+..+...+|.=.+...+++-.+..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2233333444777777888877777666
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.54 E-value=3.9 Score=36.42 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=61.6
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 572 AGCFDDAEQLIAEM-PFKPDKTIW-ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
..+++.|..-+.+. ...|...+| ..=+-.+.+..+++.+.+-..+++++.|+.......++..+..+..+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34556666655444 556766544 4444455677888888888888888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 005943 650 AGKKLGE 656 (668)
Q Consensus 650 ~~~~~~~ 656 (668)
+..+.+-
T Consensus 103 ra~sl~r 109 (284)
T KOG4642|consen 103 RAYSLLR 109 (284)
T ss_pred HHHHHHh
Confidence 8865544
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.36 E-value=5.2 Score=30.26 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555556666667889999999999999999999999999998876433 33446766654
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.21 E-value=51 Score=33.43 Aligned_cols=161 Identities=9% Similarity=0.083 Sum_probs=82.5
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHH
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGII 495 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 495 (668)
..|.....+++..+.......-++.+-.+|...| .+...|..++++|... ..+.-..+|+++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3444555556666666666666666666665554 3444555566666655 44455555554432 2333223333
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSRLKPNE-----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
.-|-+ ++.+.+..+|.+...+-++-.. ..|.-+... -..+.+....+...+..+.|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 5566666666665554221111 123333221 134555566666666555454444555555556666
Q ss_pred hcCChHHHHHHHHhC
Q 005943 571 QAGCFDDAEQLIAEM 585 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~ 585 (668)
...++.+|++++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 666777777777655
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.63 E-value=4.2 Score=38.21 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG 573 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 573 (668)
.+.|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-...... .-..++.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4578999999999999988777 467 889999999999999998888776665542 1223455565554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHH
Q 005943 574 -------CFDDAEQLIAEM-PFKPDKT 592 (668)
Q Consensus 574 -------~~~~A~~~~~~~-~~~p~~~ 592 (668)
+..+|.+-.+.. ..+|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 444444444333 4566633
No 333
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.72 E-value=4.1 Score=35.69 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=77.3
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTK 608 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 608 (668)
.|-..|-+.-|..-|.... .+.|+ +.+||-|.-.+...|+++.|.+.|+.. ...|. ..+...-..++.-.|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 4667788888888777776 66786 788999999999999999999999987 44453 222222223355678999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChhhHHHHH
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATL--GMWDSLSKVR 648 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 648 (668)
.|.+-+..--+.+|.|| |. ..+.|.-. -+..+|...+
T Consensus 151 LAq~d~~~fYQ~D~~DP--fR-~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP--FR-SLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hhHHHHHHHHhcCCCCh--HH-HHHHHHHHhhCCHHHHHHHH
Confidence 99998888888899886 22 23344332 3455555443
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.40 E-value=18 Score=29.86 Aligned_cols=105 Identities=5% Similarity=0.123 Sum_probs=69.2
Q ss_pred hhHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHH
Q 005943 187 QVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLC 264 (668)
Q Consensus 187 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~ 264 (668)
.....|.+.+..++..+ .+.++......+++...+++++.+..-+...+.
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~---------------------------- 74 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII---------------------------- 74 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh----------------------------
Confidence 34455666666666543 577777777778888887777766322211100
Q ss_pred HHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 265 EARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-NEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 265 ~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
...+..+|++++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+...
T Consensus 75 ---------------~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 75 ---------------GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ---------------hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 23356678888888766555 34567788888887888888888888888876643
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.40 E-value=4.4 Score=34.51 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+++|+.-|++++.++|+...++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445556666666677877777777777776654
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.36 E-value=3.3 Score=25.20 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666667777777777776665
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.07 E-value=13 Score=27.85 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+.-++.+-+..+....+.|++....+.+++|.+.+|+..|.++++-++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 33445555666666778888888888888998999999999888877643 2224445665543
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.87 E-value=4.7 Score=26.50 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.+..++.+.|++++|.+..+.+++.+|++..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556778999999999999999999999875543
No 339
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.43 E-value=11 Score=36.03 Aligned_cols=185 Identities=10% Similarity=0.067 Sum_probs=115.4
Q ss_pred CChHHHHHHhccCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhcCCCH
Q 005943 471 GEIDDGLALFKFMPE------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPN---EITFLGVLSACRHAGLV 539 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~g~~ 539 (668)
.+.++|+..|..... ....++..+..+.+..|.+++++..--.-++. ...-. ...|..+.+++.+..++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555544332 12345667778888888888776542211110 01111 13455666666666666
Q ss_pred HHHHHHHHhcccccCCCCC---hhHHHHHHHHhhhcCChHHHHHHHHhC-C-----CCC--CHHHHHHHHHHHHhhCCHH
Q 005943 540 EEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-----FKP--DKTIWASMLKACETHNNTK 608 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p--~~~~~~~l~~~~~~~~~~~ 608 (668)
.+++.+-+.-..-.|..|. -....++..+....+.++++++.|+.. . ..| ...++..+...|.+..|++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 6666665544433344442 233445667777788899999999876 1 112 3446778888899999999
Q ss_pred HHHHHHHHHHhcC----CCC------chhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 609 LVSIIAEQLLATS----PED------PSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 609 ~a~~~~~~~~~~~----p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+|.-+..++.++. -++ ..+...++.++...|..-+|.+.-++..+..
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9998888887732 222 2345567778899999999999988877643
No 340
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.38 E-value=1.5 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHhcCCCCccchHHHHHHHHcCCChhHHH
Q 005943 27 CRIIKYGLSQDIFTGNNLLSMYADFTSLNDAH 58 (668)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 58 (668)
++.++.. +-++..|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344333 335556666666666666666654
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.33 E-value=89 Score=34.23 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=112.8
Q ss_pred ccccchHhHHHHHHHHHHhCCCCchh-------HHHHHH-HHHHhcCChHHHHHHhccCCC--------CCHhHHHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKEDI-------TLTSLI-DMYLKCGEIDDGLALFKFMPE--------RDVVSWTGIIV 496 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~ 496 (668)
....++.+|..+..++...-..|+.. .++.+- ......|+++.|.++-+.... +.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567778887777766543232221 222221 122346788888776665432 35666777778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHH--HHHhhcCCC--HHHHHHHHHhcccccCCCCC-----hhHHHH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEIT---FLGV--LSACRHAGL--VEEAWTIFTSMKPEYGLEPH-----LEHYYC 564 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l--l~~~~~~g~--~~~a~~~~~~~~~~~~~~p~-----~~~~~~ 564 (668)
+..-.|++++|..+..+..+.--.-+... +..+ ...+...|. +.+....+......+..... ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888776665311222222 2222 223456663 23333333333322111111 233333
Q ss_pred HHHHhhhcCChHHHHHHHHhC-----CCCCCHH--H--HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHH----
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-----PFKPDKT--I--WASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYV---- 629 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---- 629 (668)
+..++.+ .+.+..-.... ...|... . +..++......|+.++|.....++..+...+ ...|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444433 33333222211 1123222 1 2245566778899999999888888733221 22221
Q ss_pred -HHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 630 -MLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 630 -~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.-.......|+.+++...+.+..+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~~~ 688 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSGDP 688 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhccCc
Confidence 1222345678888888887765443
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.97 E-value=12 Score=28.31 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=59.7
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+-. ...+--.-+.++..+|++++|..+.+.+.-||...|-.+-. .+.|-.+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 467777777777765421 22222233456778899999999999988888888876644 466777777777778887
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 97 sg-~-p~lq~Faa 107 (115)
T TIGR02508 97 SG-D-PRLQTFVA 107 (115)
T ss_pred CC-C-HHHHHHHH
Confidence 77 3 55555543
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.45 E-value=89 Score=33.64 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=42.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005943 253 LVDMYSNCNVLCEARKLFDQYSSWAASAYG---NVALWNSMISGYVLNEQNEEAITLLSHIHSS 313 (668)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 313 (668)
=++.+.+.+.+++|..+-+.... ..| -...+...|..+.-.|++++|-...-.|...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~----~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG----NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC----CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 45667888999999998887643 333 2345777888899999999998888777553
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.33 E-value=71 Score=32.46 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=106.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
+.+....-+++..++......-++.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+. .-|.....--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 34445556677777777666666666666653 4556777788888877 567777888877774 333333333333
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCC------hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPH------LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPDKTIWASMLKAC 601 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 601 (668)
-+...++.+.+..+|.++.-+ +-|. .+.|.-|.... ..+.+..+.+..++. ...-...+..+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333337777777777766532 2221 23455444432 235566666665552 223344455555667
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
....++++|++++..+++.+..|..+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77788888888888888877777666666655443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.14 E-value=7.9 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
++......|...|.+.+|.++-+++++.+|-+...+..+...|...||-=.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556678899999999999999999999999999999999999999888888877775
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.85 E-value=6.8 Score=34.46 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=41.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
.+..+..+.+.+...+|+...++- +.+| |...-..++..++-.|++++|..-++-+-++.|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344455666777777777766543 4445 44455666777777888888877777777777664
No 347
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.83 E-value=15 Score=37.67 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=69.9
Q ss_pred cCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHH
Q 005943 369 LGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFC 448 (668)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 448 (668)
.|+++.|..++..++++ ..+.++..+.+.|-.++|+++-. .|+. -|. ...+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~-------D~d~-rFe----lal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST-------DPDQ-RFE----LALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC-------Chhh-hhh----hhhhcCcHHHHHHHHHhh
Confidence 46666666666555532 23334444555666666655421 1111 111 122345555555444322
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005943 449 VKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLG 528 (668)
Q Consensus 449 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 528 (668)
.+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.| +- |.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~ 726 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NL 726 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----ch
Confidence 2344455666666666666666666554332 4444555555555544444444444433 11 11
Q ss_pred HHHHhhcCCCHHHHHHHHHhc
Q 005943 529 VLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~ 549 (668)
..-++...|+++++.+++.+-
T Consensus 727 AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 222334456666665555443
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.73 E-value=19 Score=31.83 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
.+..+..+.+.+...+++...++-.+.. +.|..+-..++..++-.|+|++|..-++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566666677777777766655541 223345556666777777777776555444
No 349
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.72 E-value=4.6 Score=22.76 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
|+.+.|..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888887754
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.49 E-value=4.8 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555444
No 351
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.41 E-value=47 Score=35.31 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC-CCHh----------HHHHHHHHHHhcCChHHHH
Q 005943 443 QVHAFCVKRGFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE-RDVV----------SWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 443 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~~a~ 508 (668)
.++.+|+..--.|+ ..+...++-.|....+++...++.+.+.. ||.. .|.-.++---+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 34555554433333 23444455556666667776666665553 3211 1222222223457778888
Q ss_pred HHHHHHHHC--CCCCCHHHHHH-------HHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCC-hHHH
Q 005943 509 AYFQEMIQS--RLKPNEITFLG-------VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGC-FDDA 578 (668)
Q Consensus 509 ~~~~~m~~~--g~~p~~~~~~~-------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A 578 (668)
...-.|.+. .+.||..+... +-+.|..++..+.|.++|++.. .+.|+...-..+.-.+...|+ ++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccch
Confidence 877666664 35566653221 1123455667778888888776 667775543334444444442 2222
Q ss_pred HHHHH------hC-CCCCC---HHHHH---HHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 579 EQLIA------EM-PFKPD---KTIWA---SMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 579 ~~~~~------~~-~~~p~---~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.++-. .+ +.+-. ...|. ..+.+-.-++++.+|.+..+.+.++.|+..
T Consensus 341 ~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 341 LELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 22211 11 11111 11121 133344567899999999999999998853
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.40 E-value=6.7 Score=29.38 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCh
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--DPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 641 (668)
|...-..+...+...|+++.|++.+-++++.+|. +...-..++.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4445555555566666666666666666665433 344555566666555553
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.87 E-value=18 Score=35.87 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=86.4
Q ss_pred HHHHHhcCChHHHH-HHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 005943 464 IDMYLKCGEIDDGL-ALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL 538 (668)
Q Consensus 464 ~~~~~~~~~~~~A~-~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 538 (668)
|.--...|+...|- +++..+.. |+.....+ ..+...|+++.+...+...... +-....+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 44444567766653 33333332 44443333 3456779999999988776554 44556788889999999999
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH--HHhhCC
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKA--CETHNN 606 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~--~~~~~~ 606 (668)
+++|...-+-|..+ .+ .+.+....-.-.....|-++++...+++. . .+|...-|-..+.. |...|+
T Consensus 373 ~~~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 373 WREALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 99999998888753 22 23444433333344567889999888887 2 33444455555544 444444
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.59 E-value=1.2 Score=41.90 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=45.5
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 573 GCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 573 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
|.+++|++.|... +..| ....|..-.+++.+.+++..|+.=+..+++++|++..-|-.-..+....|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 4455555555444 2222 2223333344455555666666666666666666666666666666666666666666666
Q ss_pred HHhcCC
Q 005943 651 GKKLGE 656 (668)
Q Consensus 651 ~~~~~~ 656 (668)
..+.+.
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 555544
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.04 E-value=1.3e+02 Score=33.58 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCChhHHHHhhhhcCCCChhH-----HHHHHH-H--HhcCCChhhHHHHHHHHHh
Q 005943 41 GNNLLSMYADFTSLNDAHKLFDEMARKNIVS-----WTTMVT-A--YTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 41 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~li~-~--~~~~~~~~~a~~~~~~m~~ 97 (668)
+..-+..+....++++|..+-+....+++.. +..... + +..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 4455555556666777777666655544431 222222 1 3456677777777776654
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.34 E-value=5.4 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
..+..++..+...|++++|...++...+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467889999999999999999998877543
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.10 E-value=1.2e+02 Score=31.68 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=50.7
Q ss_pred ccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHH-cCCChhHHHHhhhhcCC------CChhHHHHHHHHHhcCCChhh
Q 005943 15 QRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYA-DFTSLNDAHKLFDEMAR------KNIVSWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 15 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~ 87 (668)
+-|..+.+..+|++-.+ |++.++..|...+..+. ..|+.+...+.|+.... .....|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 34566666677776663 44556666665554444 35666666666666543 233456666666667777777
Q ss_pred HHHHHHHHHhc
Q 005943 88 AIRLYNHMLEY 98 (668)
Q Consensus 88 a~~~~~~m~~~ 98 (668)
...+|++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 77777777664
No 358
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.00 E-value=67 Score=33.36 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
.-|..|.++....|++..|.+.|.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345555555555555555555554443
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.80 E-value=78 Score=32.13 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=102.5
Q ss_pred HhcccCchhhhhhhHHHHHHhcCCCCccc--hHHHHHHHHcCCChhHHHHhhhhcCCCChh--HHHHHHHHHhcCCChhh
Q 005943 12 HCGQRRSIKQGKSLHCRIIKYGLSQDIFT--GNNLLSMYADFTSLNDAHKLFDEMARKNIV--SWTTMVTAYTSNKRPNW 87 (668)
Q Consensus 12 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 87 (668)
...+.|+.+. .+.+.+.|..|+... ....+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 3444566644 555556787776533 445666777888888776666643333221 11223444567788766
Q ss_pred HHHHHHHHHhcCCCCCCC--chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChh--HHHH
Q 005943 88 AIRLYNHMLEYGSVEPNG--FMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLT--RKLF 161 (668)
Q Consensus 88 a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~--~~~~ 161 (668)
+..++ +.|....+. ..-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+ +.++
T Consensus 84 v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 84 VEELL----DLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHH----HcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 55444 333220111 1112344555566665 45555666677665422 223455555667666 3333
Q ss_pred hhhhh-hhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhH---HHHHHHHHhCCChHHHHHHhhc
Q 005943 162 DQYSN-WAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTL---TSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~ 226 (668)
+.-.. ......+......+...+..++.+.+.+.|..++.... .+++...+..|+.+-+.-+++.
T Consensus 156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 22111 01111222333334444456677777777776654331 2444445566666555555443
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.95 E-value=23 Score=28.10 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=39.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 584 EMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 584 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
.+..-|++....+.+.+|.+-+|+..|.++++.++...++....|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456799999999999999999999999999999887766555565544
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.41 E-value=11 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777776544
No 362
>PRK12798 chemotaxis protein; Reviewed
Probab=71.24 E-value=1.1e+02 Score=30.34 Aligned_cols=184 Identities=11% Similarity=0.114 Sum_probs=116.9
Q ss_pred cCChHHHHHHhccCCC----CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhcCCCHH
Q 005943 470 CGEIDDGLALFKFMPE----RDVVSWTGIIVGC-GQNGRAKEAIAYFQEMIQSRLKPNEI----TFLGVLSACRHAGLVE 540 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 540 (668)
.|+.++|.+.|..+.. +..-.|-.|+.+- ....+..+|+++|+...- .-|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888764 3445566666654 345688899999998775 345443 2333344567889999
Q ss_pred HHHHHHHhcccccCCCCChhHH-HHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 541 EAWTIFTSMKPEYGLEPHLEHY-YCMVDLLGQAG---CFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
++..+-....+++...|-..-| ..+..++.+.+ ..+.-..++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8887776666666666643333 33333444333 3445556666664333455788888888899999999999999
Q ss_pred HHhcCCCCchhHHHHHHHH-----HhcCChhhHHHHHHHHHhcCC
Q 005943 617 LLATSPEDPSKYVMLSNVY-----ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 617 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+..+... ...-...+.+| .-..+++++.+.+..+....+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 9986533 22223333333 334567777777766655444
No 363
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=29 Score=31.33 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=35.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+...|++-++++...+++...|.+..+|+.-+++.+..=+.++|..=+....+..
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3455666666666666666677776677666666666666666666665555443
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.87 E-value=1.2e+02 Score=30.04 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=49.4
Q ss_pred CHHHHHHHH---HHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCChhhHHHHHHHHHh
Q 005943 590 DKTIWASML---KACETHNNTKLVSIIAEQLLATSPE-DPSKYVMLSNVYA-TLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 590 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 653 (668)
|...|.++. ..+.+.|-+..|.++.+-+..++|. ||-.....++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444454443 4577899999999999999999999 8888777777765 77888888888777654
No 365
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.84 E-value=92 Score=28.68 Aligned_cols=180 Identities=9% Similarity=0.063 Sum_probs=98.4
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHH---HHHHHHHhccccchHhHHHHHHHHHHh---CC--CCchhHHHHHHHHHHhcC
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFI---ISSVLKVCSCLASLRRGKQVHAFCVKR---GF--EKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~ 471 (668)
..++++|+.-|++..+....-..+. +..++....+.+++++....+.++... .+ .-+....|++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4567889988988877544444443 445666778888888887777766531 11 234455666666655555
Q ss_pred ChHHHHHHhccCCC-----CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHHHH
Q 005943 472 EIDDGLALFKFMPE-----RDVV----SWTGIIVGCGQNGRAKEAIAYFQEMIQSRL----KPNE-------ITFLGVLS 531 (668)
Q Consensus 472 ~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~-------~~~~~ll~ 531 (668)
+.+--..+|+.-.+ .|.. +-.-|...|...+.+.+..++++++...-- .-|. ..|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55544444443221 1211 223455666666777777777776655311 1111 23555556
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH----HhhhcCChHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD----LLGQAGCFDDAE 579 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~ 579 (668)
.|....+-.....++++...-...-|.+.....+-. ...+.|.+++|-
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 666666666666666655433233444444443322 233455666554
No 366
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.87 E-value=93 Score=32.21 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHH-cCCChhHHHHhhhhc
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYA-DFTSLNDAHKLFDEM 64 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 64 (668)
|+.++++|-|.-|.++-+.+.+....-|+.....+|+.|+ ++.++.-.+++++..
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4445555666666666666655543335555555555554 445555555555443
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.64 E-value=20 Score=26.35 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHH
Q 005943 21 QGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAI 89 (668)
Q Consensus 21 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 89 (668)
.+.++++.+.+.|+ .+....+.+-.+-...|+.+.|.+++..++ ..+..|..++.++-..|+-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 34566777776662 222233333222225577778888887777 77777777777777777655443
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.62 E-value=45 Score=27.62 Aligned_cols=82 Identities=9% Similarity=0.098 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHhcCC----CCCCCchHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCchHhhHH
Q 005943 72 WTTMVTAYTSNKRPNWAIRLYNHMLEYGS----VEPNGFMYSAVLKACSLSGD-LDLGRLIHERITREKLEYDTVLMNTL 146 (668)
Q Consensus 72 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (668)
.|.++.-....++....+.+++.+..... ...+..+|.+++++.+.... --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55566555666666666666665533210 01455667777777766555 44566677777776677777777777
Q ss_pred Hhhhhhc
Q 005943 147 LDMYVKC 153 (668)
Q Consensus 147 l~~~~~~ 153 (668)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 369
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=68.23 E-value=1.5e+02 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP--NEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
..-..+..++.+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+..
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 334457777778888888988888887642 22 22356778888888888888888888865
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.89 E-value=44 Score=27.03 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 609 LVSIIAEQLLA--TSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 609 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
.+.++|+.+.. .....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888877 4566677888899999999999999998875
No 371
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.77 E-value=1.7e+02 Score=31.08 Aligned_cols=247 Identities=7% Similarity=0.019 Sum_probs=117.2
Q ss_pred HhcCCcHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHhccc----c-chHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 398 TKHGLNSLAYLLFRDMIN-------SNQDVNQFIISSVLKVCSCL----A-SLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
....|.+.|+..|+...+ .|.++ ....+-.+|.+. . +.+.|..++....+.|. |+....-..+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344567777777777655 44222 223333333332 2 55667777777777663 33333322222
Q ss_pred HHHh-cCChHHHHHHhccCCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 466 MYLK-CGEIDDGLALFKFMPER-DVVSWTGIIVGCG----QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 466 ~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
.... ..+...|.++|....+. .+..+-.+..+|. ...+.+.|..++++..+.| .|...--...+..+.. +.+
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 2222 23566777777766542 2333322332222 2236777888888887776 3332222222233333 555
Q ss_pred HHHHHHHHhcccccCCCCChhHHHHHHHHh---hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHH
Q 005943 540 EEAWTIFTSMKPEYGLEPHLEHYYCMVDLL---GQ----AGCFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTK 608 (668)
Q Consensus 540 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~ 608 (668)
+.+.-.+..+..- +.+.....-..+.... .. ..+.+.+...+......-+......+...|.. ..+++
T Consensus 414 ~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 414 DTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred cHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChH
Confidence 5554444444321 3222111111111111 10 12344555555555333344444444444332 23577
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhc-C--ChhhHHHHHHHHHhc
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATL-G--MWDSLSKVRKAGKKL 654 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~ 654 (668)
.|...|..+.... ......++..+-+. | .+..|.++++.....
T Consensus 493 ~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 7777777766655 55666666655433 1 146666666666543
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.46 E-value=37 Score=29.82 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=48.9
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-----C-CCCCHHHHHHHHHHHHhhCCH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-----P-FKPDKTIWASMLKACETHNNT 607 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~-~~p~~~~~~~l~~~~~~~~~~ 607 (668)
.+.|+ +.|.+.|-.+... +.--+++....|+..|. ..+.+++..++-+. + ..+|+..+..|+..+.+.|++
T Consensus 118 sr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 44555 5666666666644 44445666666666666 45677777776655 2 256777888888888888887
Q ss_pred HHHH
Q 005943 608 KLVS 611 (668)
Q Consensus 608 ~~a~ 611 (668)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7763
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.22 E-value=71 Score=33.00 Aligned_cols=51 Identities=16% Similarity=0.237 Sum_probs=25.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-hcCChhhHHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPE-DPSKYVMLSNVYA-TLGMWDSLSKVRKAGK 652 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 652 (668)
.+.|-+..|.++.+.+.+++|. ||.....+++.|+ +..+|.=.++..+...
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555555 5555444554443 3344444444444443
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.20 E-value=54 Score=24.98 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=53.5
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS 517 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 517 (668)
.++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|.+|-. .+.|..+.+..-+-+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555555444321 11111222345567899999999999888888888877644 4667777777777777777
Q ss_pred CCCCCHHHHH
Q 005943 518 RLKPNEITFL 527 (668)
Q Consensus 518 g~~p~~~~~~ 527 (668)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555544
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.83 E-value=17 Score=26.17 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~ 544 (668)
..+.++|+..|+...+.-..|.. .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555554222221 145555556666666555544
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.79 E-value=2.2e+02 Score=31.88 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHhhccCCC
Q 005943 201 DVTLTSLIDMYLKCGEIDDGLALFNFMPER 230 (668)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 230 (668)
..-|..|+..|...|+.++|+++|.+....
T Consensus 504 ~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 504 SKKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 346899999999999999999999988853
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.52 E-value=31 Score=35.46 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=63.8
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKPD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
+...|+...|...+..+ ..+|. ....-.+.....+.|....|-.++.+.+.+....|-++..++++|....++++|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34567778887777665 33342 2234455566667777777888888888877777778888888888888888888
Q ss_pred HHHHHHHhcCCCCC
Q 005943 646 KVRKAGKKLGEKKA 659 (668)
Q Consensus 646 ~~~~~~~~~~~~~~ 659 (668)
+.++...+...+.|
T Consensus 697 ~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 697 EAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHhcCCCCh
Confidence 88888777665443
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.09 E-value=19 Score=27.26 Aligned_cols=54 Identities=6% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCC----C-----chhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 601 CETHNNTKLVSIIAEQLLATSPE----D-----PSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..+.|++..|.+.+.+..+.... . ......++.++...|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888887777666662211 1 234556777888889999999998887653
No 379
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.59 E-value=1.7e+02 Score=31.06 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcC
Q 005943 606 NTKLVSIIAEQLLATS 621 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~ 621 (668)
+.+.|..+++++-+..
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 4555555555555544
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.72 E-value=2.2e+02 Score=30.82 Aligned_cols=135 Identities=11% Similarity=0.128 Sum_probs=79.6
Q ss_pred hhhhhhhHHHHHH-hcCCC--CccchHHHHHHHH-cCCChhHHHHhhhhcC----CCChh-----HHHHHHHHHhcCCCh
Q 005943 19 IKQGKSLHCRIIK-YGLSQ--DIFTGNNLLSMYA-DFTSLNDAHKLFDEMA----RKNIV-----SWTTMVTAYTSNKRP 85 (668)
Q Consensus 19 ~~~a~~~~~~~~~-~~~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~----~~~~~-----~~~~li~~~~~~~~~ 85 (668)
+..|++.++-+.+ ..++| +..++-.+...+. .+.+++.|+..+++.. +++.. ....+++.+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3445666666664 22333 3345666777776 6889999999999762 22222 233456666666655
Q ss_pred hhHHHHHHHHHhcCCCC---CCCchHHHH-HHHHhccCChHHHHHHHHHHHHcC---CCCCchHhhHHHhhhhhcC
Q 005943 86 NWAIRLYNHMLEYGSVE---PNGFMYSAV-LKACSLSGDLDLGRLIHERITREK---LEYDTVLMNTLLDMYVKCG 154 (668)
Q Consensus 86 ~~a~~~~~~m~~~~~~~---p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g 154 (668)
. |...+++..+.-... +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.....
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 5 988888876543110 122233333 333333489999999998887643 3455566666666655443
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.44 E-value=93 Score=31.09 Aligned_cols=51 Identities=12% Similarity=0.040 Sum_probs=26.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhh--cCCCHHHHHHHHHhcc
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEI--TFLGVLSACR--HAGLVEEAWTIFTSMK 550 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~ 550 (668)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456666666666666665 444443 2333333333 2345566666666554
No 382
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.82 E-value=1e+02 Score=26.79 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=55.7
Q ss_pred HHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC--
Q 005943 376 LELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF-- 453 (668)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 453 (668)
+.+.++..++..+.|..+..+-++.-..+++.+.+-- ..-.+++..|.+..++.++..+++.|-+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444555566666666665444444333211 1123455667777788888888887766432
Q ss_pred ------------CCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 454 ------------EKEDITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 454 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
.+.-...|.....|.+.|..+.|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22334556666667777777777777664
No 383
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.73 E-value=2.8e+02 Score=31.75 Aligned_cols=258 Identities=9% Similarity=-0.055 Sum_probs=139.9
Q ss_pred HHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCC
Q 005943 374 SALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGF 453 (668)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 453 (668)
....+...+.+++...-...+..+.+.+..+ +...+....+ .++...-...+.++.+.+........+..+.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 3345556666777777777777777776544 4444444442 334444444444444332211112223223222
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 533 (668)
++..+-...+.++...+.. ....+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++
T Consensus 696 -~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 696 -PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred -CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHH
Confidence 4555555556666544321 12344455567777777777777777655432 22222 245665555566666
Q ss_pred hcCCCHHH-HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHH
Q 005943 534 RHAGLVEE-AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 534 ~~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
...+..+. +...+..+.. +++...-...+.++.+.|..+.+...+..+-..++...-...+.++.+.+.. .+..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHH
Confidence 66665432 3444555543 4667777888888888887665544444443356666666677777776653 3444
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 613 IAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 613 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..+++ -++...-...+.++.+.+.-..++..+..+.+
T Consensus 842 ~L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4444432 22355666666677665333456666655443
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.14 E-value=70 Score=29.74 Aligned_cols=83 Identities=10% Similarity=-0.005 Sum_probs=48.3
Q ss_pred HHHHHhcCChHHHHH----HhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----hh
Q 005943 464 IDMYLKCGEIDDGLA----LFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA-----CR 534 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~ 534 (668)
|++++..+++.++.. .|+.-.+--......-|-.|.+.+....+.++-..-...--.-+...|..++.. +.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 678888888887653 333333323444444555677888877777776665543111112235554444 34
Q ss_pred cCCCHHHHHHHH
Q 005943 535 HAGLVEEAWTIF 546 (668)
Q Consensus 535 ~~g~~~~a~~~~ 546 (668)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467888887776
No 385
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.41 E-value=44 Score=25.77 Aligned_cols=79 Identities=9% Similarity=0.028 Sum_probs=46.8
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+.+.+...+. ....+--.-+.++..+|++++|+..=.....||...|-.+-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46788888888877663 222222333455667888888855444455677777765533 467777777777777776
Q ss_pred cC
Q 005943 98 YG 99 (668)
Q Consensus 98 ~~ 99 (668)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.35 E-value=37 Score=27.02 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH
Q 005943 507 AIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV 566 (668)
Q Consensus 507 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 566 (668)
..+-+..+..-.+.|++.....-+++|.+.+|+..|.++|+-++. .+.+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 444455555667889999999999999999999999999998875 3444444565554
No 387
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.85 E-value=46 Score=27.47 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=47.3
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 575 FDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 575 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
.+.|.++.+-|+ ...............|++..|.++.+.+...+|++...-...+.+|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356677777775 233444455556789999999999999999999999999999998887765443
No 388
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.69 E-value=84 Score=28.53 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=69.4
Q ss_pred HHhcCChHHHHHHhccCC--CCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCCHHHH
Q 005943 467 YLKCGEIDDGLALFKFMP--ERDVV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT-FLGVLSACRHAGLVEEA 542 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a 542 (668)
|....++..|+..|.+.. .|++. -|+.-+.++.+.++++.+.+-..+.++ +.||..- ...+..++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 445566777877776654 46654 455567777788888888888777777 5777663 33444566677788888
Q ss_pred HHHHHhccc---ccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 543 WTIFTSMKP---EYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 543 ~~~~~~~~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..+++... ...+.|.......|..+-.+.=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888877632 1133333444444444332222233344444444
No 389
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.67 E-value=89 Score=28.16 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
......++.+..+.|++++|.+.+.++...+-
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34566777888888888888888888877655
No 390
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.14 E-value=2.6e+02 Score=30.43 Aligned_cols=170 Identities=12% Similarity=0.124 Sum_probs=92.5
Q ss_pred HHHHHcCCChhHHHHhhhhcCCC-----ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC
Q 005943 45 LSMYADFTSLNDAHKLFDEMARK-----NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG 119 (668)
Q Consensus 45 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 119 (668)
++.+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccc
Confidence 45666777788888777766431 2235677777777788888887777777643 2334444444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCC
Q 005943 120 DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEK 199 (668)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (668)
+.... ..-+.......+..+|..+|..+.. .....+++.+..|....+.....-++...... ..- -
T Consensus 438 ~l~~I---a~~lPt~~~rL~p~vYemvLve~L~--~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~--------q~S-e 503 (846)
T KOG2066|consen 438 QLTDI---APYLPTGPPRLKPLVYEMVLVEFLA--SDVKGFLELIKEWPGHLYSVLTIISATEPQIK--------QNS-E 503 (846)
T ss_pred ccchh---hccCCCCCcccCchHHHHHHHHHHH--HHHHHHHHHHHhCChhhhhhhHHHhhcchHHH--------hhc-c
Confidence 33221 2222222223455667777766666 11255555555554443332222222211100 001 1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVV 233 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 233 (668)
+...-..|...|...++++.|++++-..++++..
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 1122334888899999999999998887766543
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.51 E-value=20 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+..++.++.+.|++++|.++.+.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 456788889999999999999999988766
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.08 E-value=16 Score=32.62 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=32.2
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
..+.|+.+.|.+++.+. ...| ....|--+...-.+.|+++.|.+.|++.++++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34455666666666555 2223 3445555555555666666666666666666666543
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.32 E-value=99 Score=28.84 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=10.6
Q ss_pred HHHHHhcCCCCchhHHHHHH
Q 005943 614 AEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~ 633 (668)
+--+...+|..|+.+-.+.+
T Consensus 267 yLLv~R~DPA~Pss~p~i~k 286 (309)
T PF07163_consen 267 YLLVVRLDPASPSSLPWIYK 286 (309)
T ss_pred HHHheeecCCCCCcchHHHH
Confidence 33444566766665554443
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.31 E-value=56 Score=24.14 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 507 (668)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|...+.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 344555555552 222333333322234567777777777777 6666677777777666665444
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.00 E-value=43 Score=21.45 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=24.7
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005943 293 GYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALK 327 (668)
Q Consensus 293 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 327 (668)
...+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34566777777778888877787777777766554
No 396
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.86 E-value=1.5e+02 Score=26.93 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhH
Q 005943 380 HRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDIT 459 (668)
Q Consensus 380 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 459 (668)
+.|...-..+...-+..|.+.-++..|-....++. .+.--...+--|.+..+..--.++.+-....+++-+..-
T Consensus 123 DSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dg 196 (333)
T KOG0991|consen 123 DSMTAGAQQALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDG 196 (333)
T ss_pred chhhhHHHHHHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcch
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC----------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPE----------------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
..+++ +...|++..|+..++.-.. |.+.....++..|... ++++|.+++.++-+.|+.|..
T Consensus 197 Leaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 197 LEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHH
Q ss_pred HHHHHH
Q 005943 524 ITFLGV 529 (668)
Q Consensus 524 ~~~~~l 529 (668)
..-+.+
T Consensus 274 ii~~~F 279 (333)
T KOG0991|consen 274 IITTLF 279 (333)
T ss_pred HHHHHH
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.67 E-value=41 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 586 PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 586 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
...|+...|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888888888888877
No 398
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.80 E-value=2.2e+02 Score=28.59 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 360 SNLIDLYARLGNVKSALELFHRLPKK---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
..|+.-|...|++.+|.+.++++.-| ....+.+++.+.-+.|+....+.++++.-..|. .|.+.+-++|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 34788889999999999999988766 567889999999999999889999888877663 344444444443
No 399
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.42 E-value=9.3 Score=38.06 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=69.7
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHH-HHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCC
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYC-MVDLLGQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNN 606 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 606 (668)
+..+...++++.|..++.++. .+.||...|-. =..++.+.+++..|+.=+.++ ...|. ...|.--..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 455667888999999999988 66887554443 347788888888887655544 44453 2234334455667778
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
+.+|...|+......|+++.+-..+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 88888888888889999876655443
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.25 E-value=57 Score=26.54 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHhhhcCChHH---HHHHHHhC-C-CCCC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFDD---AEQLIAEM-P-FKPD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
.++..+-..+..++.+..+.++ -+.++++. + ..|+ .....-+.-++.+.++++.++++.+.+++.+|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5666777777777777765444 44566655 2 2332 22333455567788888888888888888888776543
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.01 E-value=86 Score=25.57 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhcCC---CHHHHHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 520 KPNEITFLGVLSACRHAG---LVEEAWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.++..+--.+..++.+.. +..+.+.+++.+.++ -.| ......-|.-++.+.|++++++.+++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 444444444555555444 344555566666531 122 2333444555666667777777666655
No 402
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.55 E-value=1.8e+02 Score=28.13 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=49.7
Q ss_pred chhhhhhhHHHHHHhcC----CCCccchHHHHHHHHcCCChhHHHHhhhhcCC-CChhHHHHHHHHHhcCCChhhHHHHH
Q 005943 18 SIKQGKSLHCRIIKYGL----SQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR-KNIVSWTTMVTAYTSNKRPNWAIRLY 92 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 92 (668)
-...|.+.|+.+...+. ..++.....++....+.|..+.-..+++.... ++......++.+++...+++...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 46667777777776422 23444555666666777776665555555544 45566777777777777777777777
Q ss_pred HHHHhcC
Q 005943 93 NHMLEYG 99 (668)
Q Consensus 93 ~~m~~~~ 99 (668)
+.....+
T Consensus 225 ~~~l~~~ 231 (324)
T PF11838_consen 225 DLLLSND 231 (324)
T ss_dssp HHHHCTS
T ss_pred HHHcCCc
Confidence 7777754
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.47 E-value=35 Score=30.12 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=17.3
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
...|+..+|..++.++...|+.++|.....++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455555555555555555555555555544
No 404
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.23 E-value=24 Score=38.08 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=64.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
-++++++++.+.+...--| .++|..+.+.|-.+-|+.+.+.-..+++ ....+|+.+.|+
T Consensus 605 i~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~-------------LaLe~gnle~al 663 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFE-------------LALECGNLEVAL 663 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhee-------------eehhcCCHHHHH
Confidence 3456777776554432211 2345556677777777776655443322 345678888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 580 QLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 580 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+.-.++. |..+|..|.....+.|+.+-|+..|++...
T Consensus 664 e~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 664 EAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 8877775 667888888888888898888888888665
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.22 E-value=44 Score=34.43 Aligned_cols=101 Identities=18% Similarity=0.073 Sum_probs=74.9
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTK 608 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~ 608 (668)
....|+.-.|...+.... ...|- ......|.+.+.+.|...+|-.++... . ....+.++..+.+++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 345788888888887776 44553 334556777788888888888877654 2 2345567788888888899999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
.|++.++.+.++.|.++.+-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999887776665433
No 406
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.21 E-value=1.5e+02 Score=27.05 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=57.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSRLK-PNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA 572 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (668)
--+.-.|+++.|+++.+.++++|++ |+.+ ++-+++- ++....-...... |-+.++.....+...-...
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~~ 161 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASA-GESVEPYFLRVFLDLTTEW 161 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHc-CCCCChHHHHHHHHHHhcC
Confidence 3446779999999999999998865 4332 2222221 2222222222212 4333443333322221111
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hhCCHHHHHHHHHHHHhcCCCC
Q 005943 573 GCFDDAEQLIAEMPFKPDKTIWASMLKACE---------THNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 573 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+|+.......|..+...+. ..++...|..+++++.+++|.-
T Consensus 162 -----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 162 -----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred -----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 2222223334555555553 3457788999999999998773
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.14 E-value=1e+02 Score=33.81 Aligned_cols=160 Identities=15% Similarity=0.078 Sum_probs=100.6
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEE 541 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 541 (668)
++|..+.+.|-++-|+.+.+.-. + -...+...|+.+.|++.-+++- +..+|..|.......|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~-----t---RF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER-----T---RFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc-----h---heeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHH
Confidence 34555566677766665544221 1 1223356688888877655432 45688888888888999998
Q ss_pred HHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 542 AWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
|+-.|++.+ .|..|--.|.-.|+.++-.++.+.+..+.|..+- .....-.|++++-..+++. .
T Consensus 691 aEm~yQ~~k----------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n----~ 753 (1202)
T KOG0292|consen 691 AEMCYQRTK----------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILEN----G 753 (1202)
T ss_pred HHHHHHHhh----------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHh----c
Confidence 888888876 2445555677788888887777777555554432 1111235677765555544 3
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..-+..|.. -...|.-++|.++.+++.+.+.
T Consensus 754 g~~~laylt----a~~~G~~~~ae~l~ee~~~~~~ 784 (1202)
T KOG0292|consen 754 GQLPLAYLT----AAAHGLEDQAEKLGEELEKQVP 784 (1202)
T ss_pred CcccHHHHH----HhhcCcHHHHHHHHHhhccccC
Confidence 333334433 2367888999999999888655
No 408
>PHA02940 hypothetical protein; Provisional
Probab=51.90 E-value=1.2e+02 Score=27.42 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC
Q 005943 203 TLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG 282 (668)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 282 (668)
+|...+..|+...-+..-.++.++..++++..-+..+..+.+.--.+...++.-|.+.++.++-.-+-+.+.+. .
T Consensus 98 mF~nai~lYAnL~ainal~~~i~~~ik~~~~~t~~~~i~FtqkA~dtv~~la~~yvq~vk~d~r~~~a~~l~ke---L-- 172 (315)
T PHA02940 98 MFDNAIELYANLAAINALLRLIRSFIKPEPTLTTPLFIDFTQKAKDTVILLAGRYVQDVKKDDRRTIANKLSKE---L-- 172 (315)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCcCchHHHHHHHHhhhHHHHHHHHHHHHccccHHHHHHHHHHhh---h--
Confidence 45555566665555555556666555554433333333333334456667788888888887766666655321 1
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005943 283 NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACI 330 (668)
Q Consensus 283 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 330 (668)
+| .+..--...+++.+++-+++|.+..-.....||+.+.+++-
T Consensus 173 ---s~--~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~ald 215 (315)
T PHA02940 173 ---SW--TIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRALD 215 (315)
T ss_pred ---hH--HHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 11 12222344568888888999988887888889988776654
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.80 E-value=4.2e+02 Score=30.38 Aligned_cols=124 Identities=11% Similarity=-0.002 Sum_probs=54.4
Q ss_pred CCeeeHHHHHHHHHhCCChhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHH
Q 005943 282 GNVALWNSMISGYVLNEQNEE-AITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS 360 (668)
Q Consensus 282 ~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (668)
++...-.....++...+..+. +...+..+... +|...-...+.++...+.. ..+...+....+ .++..+-.
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~--~~~~~~l~~aL~---d~d~~VR~ 825 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCP--PDDVAAATAALR---ASAWQVRQ 825 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCc--chhHHHHHHHhc---CCChHHHH
Confidence 344444444555555554332 33444444432 3455555555555555543 222111111111 23444444
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDM 413 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 413 (668)
..+.++.+.+..+....+...+.+++...-...+.++.+.+....+...+...
T Consensus 826 ~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 826 GAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45555555554444444444444555554444555554432233344444433
No 410
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.80 E-value=1.9e+02 Score=26.36 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=52.6
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHH
Q 005943 491 WTGIIVGCG--QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL 568 (668)
Q Consensus 491 ~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 568 (668)
|...++++. -+++++.|.+.+-+- .+.|+.. .-++.++...|+.+.|..+++.... .-.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444555543 345566666555211 1222211 1355556666777777777666542 11122333333333
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 005943 569 LGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHN 605 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 605 (668)
...|...+|..+-+....+-....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 445677777777666643222445666666655433
No 411
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=51.06 E-value=2.9e+02 Score=28.33 Aligned_cols=444 Identities=9% Similarity=-0.004 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc--hHhhH
Q 005943 68 NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDT--VLMNT 145 (668)
Q Consensus 68 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 145 (668)
|+..|...+..+-+.+.+.+.-.+|..|...+...|+...|.+.=..=...+ ++.|+.+|..-.+....... .-|--
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHHhhcCCCChHHHHHHHH
Q ss_pred HHhhhhhcCChhHHHHhhhhhhh-hhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHh
Q 005943 146 LLDMYVKCGSLTRKLFDQYSNWA-ASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALF 224 (668)
Q Consensus 146 ll~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 224 (668)
+.-.|...-.-.+..+....... .+.......|.........+.-.+...+ .......-..+...+...-.
T Consensus 183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e--------~~~~~~~d~~kel~k~i~d~ 254 (568)
T KOG2396|consen 183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVE--------LSVAEKFDFLKELQKNIIDD 254 (568)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcc--------hHHHHHHHHHHHHHHHHHHH
Q ss_pred hccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHH
Q 005943 225 NFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAI 304 (668)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 304 (668)
-.-..++..+ -..+.|.+.++-. ..-+...+...-.+..-..+.+...
T Consensus 255 ~~~~~~~np~--------------------------~~~~laqr~l~i~------~~tdl~~~~~~~~~~~~~~k~s~~~ 302 (568)
T KOG2396|consen 255 LQSKAPDNPL--------------------------LWDDLAQRELEIL------SQTDLQHTDNQAKAVEVGSKESRCC 302 (568)
T ss_pred HhccCCCCCc--------------------------cHHHHHHHHHHHH------HHhhccchhhhhhchhcchhHHHHH
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC
Q 005943 305 TLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK 384 (668)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (668)
.+|++..+ -.|+...+...|..|...-.. .....+...+. ..+.+.....
T Consensus 303 ~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~--~r~~~I~h~~~--------------------------~~~~~~~~~~ 352 (568)
T KOG2396|consen 303 AVYEEAVK--TLPTESMWECYITFCLERFTF--LRGKRILHTMC--------------------------VFRKAHELKL 352 (568)
T ss_pred HHHHHHHH--HhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHH--------------------------HHHHHHHhcc
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc--cchHhHHHHHHHHHHhCCCCchhHHHH
Q 005943 385 KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCL--ASLRRGKQVHAFCVKRGFEKEDITLTS 462 (668)
Q Consensus 385 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ 462 (668)
-...-+......+........+..+-..+...++..|...|-.-+...... .---.-...+..+...-..+....+++
T Consensus 353 l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s 432 (568)
T KOG2396|consen 353 LSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWAS 432 (568)
T ss_pred cccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHH
Q ss_pred HH-HHHHhcCChHHHHHHhccCCCCCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhhcCCC
Q 005943 463 LI-DMYLKCGEIDDGLALFKFMPERDVVSWTG-IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS--ACRHAGL 538 (668)
Q Consensus 463 l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~ 538 (668)
.. ..+......+.....+..+..++..++.. ++.-+-+.|-..+|...+..+... -+|+...|..++. .-...-+
T Consensus 433 ~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~ 511 (568)
T KOG2396|consen 433 ASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN 511 (568)
T ss_pred HhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
..-+..+|+.+...+| .|+..|...+..=...|..+.+-.++.++
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 412
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.83 E-value=53 Score=30.46 Aligned_cols=60 Identities=23% Similarity=0.174 Sum_probs=49.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+-.++.+.++++.|....++.+.++|.++.-+..-+-+|.+.|.+..|++-++...+.=+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 344577888999999999999999999988888888889999998888888887655444
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.70 E-value=48 Score=21.21 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=21.6
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCchHhhHHHh
Q 005943 115 CSLSGDLDLGRLIHERITREKLEYDTVLMNTLLD 148 (668)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 148 (668)
..+.|-.+++..+++.|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455556667777777777776666666665554
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.66 E-value=1.1e+02 Score=23.12 Aligned_cols=21 Identities=5% Similarity=-0.040 Sum_probs=14.7
Q ss_pred HHHHhhCCHHHHHHHHHHHHh
Q 005943 599 KACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~ 619 (668)
......|++++|...++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 335566777777777777776
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.57 E-value=36 Score=31.83 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=34.9
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 570 GQAGCFDDAEQLIAEM-PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.+.|+.++|..+|+.. ...|+ +.....+..-...+++.-+|.++|-+++...|.+..++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4567777777777654 33343 2333333333344566666777777777777776655544
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=1e+02 Score=29.45 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM--P--FKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
..|.-=.+-|.+..++..|...|.+. . ..| +...|+.-..+-.-.|++..++.=..+++..+|....+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456677778888888888766 1 123 34456665566666788888888888888889998888888888
Q ss_pred HHHhcCChhhHHHHHHHH
Q 005943 634 VYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 634 ~~~~~g~~~~a~~~~~~~ 651 (668)
++.+..++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 888888876666655543
No 417
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.91 E-value=1.3e+02 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 005943 287 WNSMISGYVLNEQNEEAITLLSHIHS 312 (668)
Q Consensus 287 ~~~li~~~~~~~~~~~a~~~~~~m~~ 312 (668)
|..++.-|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 418
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=47.15 E-value=1.5e+02 Score=23.67 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHh-------cCCCCchh----HHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLA-------TSPEDPSK----YVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
..|..++...|++++++...+.++. ++.+.... ...-+.++...|+.++|.+.|+...
T Consensus 59 A~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 59 AGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3444445555555555444444332 44443333 3445566778888888888877654
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.85 E-value=3.3e+02 Score=27.69 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=31.6
Q ss_pred HHHHHHHHHh---cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 390 WSGLIMGCTK---HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 390 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4445555554 47899999999999999988876665555555433
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.09 E-value=2e+02 Score=29.96 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE 485 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~ 485 (668)
..++.-|.+.+++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 4566778888888888888887763
No 421
>PRK10941 hypothetical protein; Provisional
Probab=45.55 E-value=1.7e+02 Score=27.54 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKY 628 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 628 (668)
+.+-.+|.+.++++.|+.+.+.+ ...| +..-+..-.-.|.+-|.+..|..=++..++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34445566666666666666665 3333 333455555556666777777776777766666665543
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.48 E-value=1.4e+02 Score=23.14 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=45.3
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
..++|..|.+.+...+. ....+--+-+..+.+.|++++|+..=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34566666666655543 12222223344566778888885555555567777776553 3466777777777776666
Q ss_pred CCCCCCHHHH
Q 005943 517 SRLKPNEITF 526 (668)
Q Consensus 517 ~g~~p~~~~~ 526 (668)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3433333
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.88 E-value=76 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=8.2
Q ss_pred hhcCCCHHHHHHHHHhcc
Q 005943 533 CRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~ 550 (668)
|.+.|.+++|.+++++..
T Consensus 121 Cm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 121 CMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHhcCchHHHHHHHHHHh
Confidence 444444444444444443
No 424
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.63 E-value=2.8e+02 Score=26.31 Aligned_cols=50 Identities=4% Similarity=0.005 Sum_probs=24.4
Q ss_pred CChHHHHHHhccCCCC-CHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC
Q 005943 471 GEIDDGLALFKFMPER-DVVSWTGIIVGCGQ----NGRAKEAIAYFQEMIQSRLK 520 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~ 520 (668)
.+...|...|....+. .......|...|.. ..+..+|...+++..+.|..
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 3455666666644433 22333334444433 22555666666666665533
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.55 E-value=49 Score=31.19 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGV 529 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 529 (668)
-|+..|....+.||+++|+.++++..+.|+.--..+|..-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4778899999999999999999999999877666665443
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.38 E-value=41 Score=23.03 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..-...++..|.+.|++++|.++++.+.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455677778888888888888887754
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.13 E-value=39 Score=33.93 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=81.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITF-LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQ 571 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 571 (668)
-+..+...+.++.|..++.+.++ +.||...| ..-..++.+.+++..|+.=..... ...|+ ...|..=..++.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchhhheeeeccHHHHh
Confidence 34556677899999999999999 58877654 444478899999999987766666 33554 3334333445556
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 572 AGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 572 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.+.+.+|+..|+.. ...|+..-....+.-|-+... ++-|+..+-..+
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs----~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS----EEKFEKAILTPE 132 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH----HHhhhhcccCCc
Confidence 67788888888877 577888877777776644432 223555555333
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.02 E-value=4.5e+02 Score=28.16 Aligned_cols=365 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHh
Q 005943 37 DIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACS 116 (668)
Q Consensus 37 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 116 (668)
++.-|+ .+..+.-+|.++.|.+++.....-... ..++-.+.+..+++.|.... |+.. .
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~~~---------~~~~~~~~~~~LL~~~P~~~---~~~~---------~ 205 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLHSSYQSY---------SLQSAFEALIQLLSSMPRYR---PNSG---------Q 205 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TTTTTTTH---------HHHHHHHHHHHHHTT----------------------
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhcccccch---------hHHHHHHHHHHHHHhCCCcc---ccch---------h
Q ss_pred ccCChHHHHHHHHHHHHc----CCCCCchHhhHHHhhhhh--cCChh------HHHHhhhhhhhhhcCCCchhhhhhhhc
Q 005943 117 LSGDLDLGRLIHERITRE----KLEYDTVLMNTLLDMYVK--CGSLT------RKLFDQYSNWAASAYGNVALWNSMLSG 184 (668)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~--~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (668)
...++..+.+-|...... ...........=+....+ .|+.+ ...++.+..+..=..|.......+...
T Consensus 206 s~~~f~~~~~~W~~~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~ 285 (566)
T PF07575_consen 206 SESEFSSQWREWKSECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEY 285 (566)
T ss_dssp --SS-HHHHHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHH
Q ss_pred chhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHH
Q 005943 185 GKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLC 264 (668)
Q Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~ 264 (668)
+....+.. .++...---.+-..+-.|++..+++....+.. +..+-..+++.+...|-++
T Consensus 286 a~~~~~~~-----~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~~~----------------~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 286 AQSCLEEF-----PPDSTNPLEQILLAIFEGDIESVLKEISSLFD----------------DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HHHHHHHS--------TTSTTHHHHHHHHTS--GGGHHHHHHH------------------HHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHhcC-----CCCCCCHHHHHHHHHHccCHHHHHHHHHHHcc----------------chhHHHHHHHHHHhcCccc
Q ss_pred -------H----HHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Q 005943 265 -------E----ARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLL 333 (668)
Q Consensus 265 -------~----A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 333 (668)
. ..-++-..... ...+...|..-+..+...++.. ...++++...-...+.....-++..|.+.|
T Consensus 345 ~~~~~~~~~~~lre~~ll~YA~~---L~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~ 419 (566)
T PF07575_consen 345 DSEQEDFGGSSLREYLLLEYASS---LMSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELG 419 (566)
T ss_dssp -SS-----TS-HHHHHHHHHHHH---HHT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT
T ss_pred cccccccccccHHHHHHHHHHHH---HhcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCC
Q ss_pred ccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC----ChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 334 NFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK----DVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
.. +.+..+.+.+-..-+. ..-|..-+..+.++|+...+..+-+.+.+. +......++.......-...-+..
T Consensus 420 L~--~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~f 495 (566)
T PF07575_consen 420 LE--DVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSF 495 (566)
T ss_dssp -H--HHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------------------------------------
T ss_pred CH--HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHH
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
+.+..+-. -..+.++..+|.+.+-.+.+.+..|...-...|.++
T Consensus 496 la~yreF~-------------~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 496 LAKYREFY-------------ELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHH-------------HHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 429
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.80 E-value=1.4e+02 Score=22.14 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=34.1
Q ss_pred hhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhc
Q 005943 24 SLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEM 64 (668)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 64 (668)
++|+.....|+..|+..|..+++.+.-+=..+...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78888888999999999999988887776777777777776
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.75 E-value=79 Score=28.47 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=39.0
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD 590 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 590 (668)
..+.++.+.|.+++.+.. ++.| ....|..+...-.+.|+++.|.+.+++. ...|+
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 456677778888877776 5555 4677777777778888888888777766 44443
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.28 E-value=3.3e+02 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+...-..++.++....+.+...++++.+..
T Consensus 200 ~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp THHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.94 E-value=3.7e+02 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNSLAYLLFRDM 413 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 413 (668)
.+.-+...|..+|+++.|.+.+.+..+- -...|-.+|..-.-.|+|........+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 3444566666777777777776664431 1223444444444555555555554444
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.81 E-value=94 Score=26.90 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=9.9
Q ss_pred HHHhhCCHHHHHHHHHHHHh
Q 005943 600 ACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~ 619 (668)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555444
No 434
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.53 E-value=1.2e+02 Score=22.35 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=42.5
Q ss_pred hhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhH
Q 005943 22 GKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 88 (668)
...+++.+.+.|+ .+....-..-+...+.+.|.++++.++..+..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3456777776663 22222333344556788888888888888888888888888777765444
No 435
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.49 E-value=2.5e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI 524 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 524 (668)
....+.++..+...|+++.|-+.|.-+.... ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 3457788888999999999999999888753 34443
No 436
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.33 E-value=3e+02 Score=25.72 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=73.9
Q ss_pred hcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhcCCC------
Q 005943 469 KCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAY----FQEMIQSRLKPNEITFLGVLSACRHAGL------ 538 (668)
Q Consensus 469 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 538 (668)
+.+++++|++++.. =...+.+.|+...|-++ ++-..+.+.+++......++..+...+.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666665432 22234455554444333 3333334556666554555444443321
Q ss_pred --HHHHHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 539 --VEEAWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 539 --~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
...|+++- . . +-.| ++.....+...|.+.|++.+|...|--.. .|+...+-.++.
T Consensus 71 ~fi~~ai~WS---~-~-~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~--------------- 129 (260)
T PF04190_consen 71 KFIKAAIKWS---K-F-GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLE--------------- 129 (260)
T ss_dssp HHHHHHHHHH---H-T-SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH---c-c-CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHH---------------
Confidence 12333333 1 1 2223 57788888899999999888887775442 122222211222
Q ss_pred HHHHhcCCCCchhHHH-HHHHHHhcCChhhHHHHHHHHHhc
Q 005943 615 EQLLATSPEDPSKYVM-LSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 615 ~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
....+..|.+...|.. .+--|...|+...|...++...+.
T Consensus 130 ~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 130 EWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222333444444433 333477888899999888777655
No 437
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.24 E-value=1.9e+02 Score=23.35 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=30.2
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 610 VSIIAEQLLA--TSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 610 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
..++|..+.. +...-+..|...+..+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777766 445556678888888888899999888875
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.19 E-value=39 Score=27.33 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred cCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 005943 81 SNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC 115 (668)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 115 (668)
+.|.-.+|-.+|..|.+.|.+ || .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~p-Pd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNP-PD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCC-Cc--cHHHHHHHh
Confidence 345566788888888888866 65 466666543
No 439
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=41.04 E-value=1.9e+02 Score=23.29 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhhCCHHHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWA-SMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
..+..+++.++.=.|..++|.++++..+-.++-...| .++..|.+..+.++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566777777777777777777777775444444333 3666677776666665555543
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.99 E-value=33 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=25.0
Q ss_pred ccCchhhhhhhHHHHHHhcCCCCccchHHHHHHH
Q 005943 15 QRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMY 48 (668)
Q Consensus 15 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 48 (668)
..|.-.+|..+|.+|++.|-+||. |+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 347778899999999999988874 77777653
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.49 E-value=2.9e+02 Score=25.20 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=67.1
Q ss_pred HHHHHHHH--HhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 460 LTSLIDMY--LKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 460 ~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
|...++++ ...++++.|.+.+..-.-+ ...-..++.++...|+.+.|+.+++...-..- +......++.+ ...+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcC
Confidence 33444444 3457777887777543221 11122477777778888888888877543211 12223333333 5567
Q ss_pred CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH
Q 005943 538 LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKT 592 (668)
Q Consensus 538 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 592 (668)
.+.+|..+-+..... -....+..++..+..........+.+-.++..+...
T Consensus 155 ~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred CHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 888888776655431 114566666666654443233344444555554433
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.00 E-value=56 Score=30.83 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCCeee-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005943 281 YGNVAL-WNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFT 323 (668)
Q Consensus 281 ~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 323 (668)
.||..+ ||.-|....+.|++++|+.++++.+..|+.--..||.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344444 6788999999999999999999999998755555543
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.83 E-value=2e+02 Score=28.82 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 005943 202 VTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYS 274 (668)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 274 (668)
.+.-.|++..+-.||+..|++.++.+.-.....++.+..+ ...++.-+.-+|.-.+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~----~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC----HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch----heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999998874332233333333 56777778888888888888888888763
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.59 E-value=2e+02 Score=23.20 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 506 EAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
.+.++|+.|..+|+--. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777777665444 33456666666667777777776653
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.29 E-value=3.2e+02 Score=26.05 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHH
Q 005943 407 YLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVK 450 (668)
Q Consensus 407 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 450 (668)
.++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45666666777777777777666666666666777777776654
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.91 E-value=4.3e+02 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChHHHHHHhhccC-CCCcch
Q 005943 206 SLIDMYLKCGEIDDGLALFNFMP-ERDVVS 234 (668)
Q Consensus 206 ~li~~~~~~g~~~~A~~~~~~~~-~~~~~~ 234 (668)
.+..-++..|.++.|++++++-. -.|..|
T Consensus 123 ~laadhvAAGsFetAm~LLnrQiGivnF~P 152 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQIGIVNFEP 152 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC-B---GG
T ss_pred CcHHHHHHhCCHHHHHHHHHHHhCccccHH
Confidence 45566888999999999997654 334333
No 447
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.88 E-value=85 Score=18.62 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=7.1
Q ss_pred HHHHHHhcCChhhHHHH
Q 005943 631 LSNVYATLGMWDSLSKV 647 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~ 647 (668)
++-.+..+|++++|+++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33344444444444444
No 448
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.87 E-value=4.4e+02 Score=26.82 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccC---CCCCHhHHHHHH
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFM---PERDVVSWTGII 495 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~ 495 (668)
..+......++..+ .|+...+..+++.+...+...+.... .+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v----------------~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELL----------------EEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHH----------------HHHHhhhhhccCCCccHHHHHH
Confidence 45555555555543 67788877777766543211222111 1111111 111222233344
Q ss_pred HHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 496 VGCGQ---NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 496 ~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
.++.+ .++.+.|+..+..|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 44444 4789999999999999998887666555555554444
No 449
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.60 E-value=4.5e+02 Score=26.95 Aligned_cols=340 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChh-HHHHhhhhhhhhhcCCC
Q 005943 96 LEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLT-RKLFDQYSNWAASAYGN 174 (668)
Q Consensus 96 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 174 (668)
+..+.. ............-...+.++...+.+..+...|.......+|.-...|.+.|-.. ..+++++..
T Consensus 9 ktq~~~-d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~a-------- 79 (696)
T KOG2471|consen 9 KTQAGE-DENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEA-------- 79 (696)
T ss_pred cccccc-chhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHH--------
Q ss_pred chhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHH
Q 005943 175 VALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALV 254 (668)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 254 (668)
+...+...-..|.-....-....+-...-.|.....+..|+++......+-..-......+ +.....
T Consensus 80 ------L~~~~~~~~~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~-------v~~l~~ 146 (696)
T KOG2471|consen 80 ------LTADADAPGDVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAAS-------VTLLSD 146 (696)
T ss_pred ------HHHhhccccchhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHH-------HHHHHH
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 255 DMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
..+......++|+.++.-+.....-..-....-+.=.....+.+....|..-+.-.
T Consensus 147 ~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a------------------------ 202 (696)
T KOG2471|consen 147 LLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTA------------------------ 202 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhh------------------------
Q ss_pred cchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCCcHHHHHHHH
Q 005943 335 FNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP---KKDVVAWSGLIMGCTKHGLNSLAYLLFR 411 (668)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 411 (668)
.+......--+..|....++..+.+-.+... ..+....-.--..+.-.|++.+|.+++-
T Consensus 203 ------------------~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 203 ------------------DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred ------------------ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH
Q ss_pred HHHHcCCCCcHHH--------HHHHHHHhccccchHhHHHHHHHHHH-------hCCCCchh----------HHHHHHHH
Q 005943 412 DMINSNQDVNQFI--------ISSVLKVCSCLASLRRGKQVHAFCVK-------RGFEKEDI----------TLTSLIDM 466 (668)
Q Consensus 412 ~m~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~----------~~~~l~~~ 466 (668)
..--..-.-...| ++.+-..+.+.+.+..+..+|....+ .|+.|... ......-.
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
|...|++-.|.+.|.+..+ .++..|-.|..+|.
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
No 450
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.24 E-value=4.4e+02 Score=26.67 Aligned_cols=211 Identities=13% Similarity=0.058 Sum_probs=99.1
Q ss_pred HHHcCCChhHHHHhhhhcCCCChhH--HHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCc--hHHHHHHHHhccCChH
Q 005943 47 MYADFTSLNDAHKLFDEMARKNIVS--WTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGF--MYSAVLKACSLSGDLD 122 (668)
Q Consensus 47 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~ 122 (668)
..++.|+.+.+..+++.-..++... ..+.+...++.|+.+ +.+.+.+.|.. |+.. .....+...+..|+.+
T Consensus 8 ~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 8 DAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAI-PDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCC-ccccCCCcccHHHHHHHCCCHH
Confidence 3456677777777776543333221 223334445566654 34445555644 4422 1233455666777776
Q ss_pred HHHHHHHHHHHcCCCCCch---HhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCC
Q 005943 123 LGRLIHERITREKLEYDTV---LMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEK 199 (668)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (668)
.+..+++ .|...+.. .-.+.+...+..|+ .++.+.+.+.|..|
T Consensus 83 ~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~------------------------------~~iv~~Ll~~gad~ 128 (413)
T PHA02875 83 AVEELLD----LGKFADDVFYKDGMTPLHLATILKK------------------------------LDIMKLLIARGADP 128 (413)
T ss_pred HHHHHHH----cCCcccccccCCCCCHHHHHHHhCC------------------------------HHHHHHHHhCCCCC
Confidence 6555554 33211110 01122222223333 34555566677666
Q ss_pred Chhh--HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhh
Q 005943 200 EDVT--LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWA 277 (668)
Q Consensus 200 ~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 277 (668)
+... -.+.+...+..|+.+-+..+++.-...+.. +..-. +-+...+..|+.+-+.-+++.-
T Consensus 129 ~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~------------d~~g~-TpL~~A~~~g~~eiv~~Ll~~g---- 191 (413)
T PHA02875 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE------------DCCGC-TPLIIAMAKGDIAICKMLLDSG---- 191 (413)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC------------CCCCC-CHHHHHHHcCCHHHHHHHHhCC----
Confidence 5432 123455566778887777776644322211 11111 1122234456666555554432
Q ss_pred hcCCCCee---eHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005943 278 ASAYGNVA---LWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDS 319 (668)
Q Consensus 278 ~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 319 (668)
..++.. ...+.+...+..|+. ++.+.+.+.|..++.
T Consensus 192 --a~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 192 --ANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred --CCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 333321 122344434455554 344555566766654
No 451
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.11 E-value=3.6e+02 Score=25.58 Aligned_cols=54 Identities=6% Similarity=-0.068 Sum_probs=26.5
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcccc
Q 005943 282 GNVALWNSMISGYVLNEQNEEAITLLSHIHSS-GMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 282 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
++..+-..++..++..+++.+-.++.+..... +..-|...|..+++.....|+.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 34444444555555555555555555544433 3334444455555555555444
No 452
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.97 E-value=1e+02 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=6.9
Q ss_pred HcCCChhHHHHhhh
Q 005943 49 ADFTSLNDAHKLFD 62 (668)
Q Consensus 49 ~~~g~~~~a~~~~~ 62 (668)
++.|+++-+..+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44455555444444
No 453
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.09 E-value=48 Score=22.67 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=14.5
Q ss_pred CCchHHHHHHHHhccCChHHHHHHHHHHH
Q 005943 104 NGFMYSAVLKACSLSGDLDLGRLIHERIT 132 (668)
Q Consensus 104 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 132 (668)
|-.---.++.++...|++++|.+..+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333445555555555555555555544
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.73 E-value=4e+02 Score=25.80 Aligned_cols=118 Identities=9% Similarity=0.128 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh------cCCCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACR------HAGLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 576 (668)
+++++.++++...++ .|.+......|.++- ..-+|.....+|+.+. .+.|++ .+.|--+ ++.+.--.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhhHH
Confidence 567888888888876 488887777776653 2346777777777776 334543 2333222 233333456
Q ss_pred HHHHHHHhCCCCCCHH---HHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 577 DAEQLIAEMPFKPDKT---IWASM-LKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 577 ~A~~~~~~~~~~p~~~---~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.++..++-+...|... .|..+ ...+.+.|..++|...|+++..+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 6677777664443222 22222 23377889999999999999998776543
No 455
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.19 E-value=4.5e+02 Score=26.14 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hcCCCHHHHHHHHHhcc
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC-RHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~ 550 (668)
+..+.+.|-+..|+++.+-+......-|+.....+|+.| .+.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 456677788888888888777754333555556666654 45677777777776654
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.01 E-value=1.2e+02 Score=24.10 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHH--HHhhCCHHHHHHHHHHHHh---cCCC---------CchhHHHHHHHHHhcCChhhHHHHHHH----HHhc
Q 005943 593 IWASMLKA--CETHNNTKLVSIIAEQLLA---TSPE---------DPSKYVMLSNVYATLGMWDSLSKVRKA----GKKL 654 (668)
Q Consensus 593 ~~~~l~~~--~~~~~~~~~a~~~~~~~~~---~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~ 654 (668)
+|.+|-.+ -...|.+++|..-+.++.+ .-|+ |..++..|+.++...|+|+++..--+. .-.+
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 45555554 3456788888887777766 2343 355677899999999999998765443 3345
Q ss_pred CC--CCCceeEE
Q 005943 655 GE--KKAGMSWI 664 (668)
Q Consensus 655 ~~--~~~~~~~~ 664 (668)
|. ++.|.-||
T Consensus 89 GEL~qdeGklWI 100 (144)
T PF12968_consen 89 GELHQDEGKLWI 100 (144)
T ss_dssp --TTSTHHHHHH
T ss_pred cccccccchhHH
Confidence 55 66677776
No 457
>PRK00971 glutaminase; Provisional
Probab=34.89 E-value=3.9e+02 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=13.3
Q ss_pred HhCCCCChhhHHHHHHH
Q 005943 194 KRGFEKEDVTLTSLIDM 210 (668)
Q Consensus 194 ~~g~~~~~~~~~~li~~ 210 (668)
+-|++|+...||.++..
T Consensus 86 ~VG~EPSG~~FNSi~~L 102 (307)
T PRK00971 86 RVGKEPSGDPFNSLVQL 102 (307)
T ss_pred HhCCCCCCCCCcchhhh
Confidence 45889999999987653
No 458
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=34.58 E-value=1.2e+02 Score=21.95 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=33.4
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHH---HHHHHHHhcCChhhHHHHH
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYV---MLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 648 (668)
...+.+.|+..|+.+++..++.+.-+. .++.+|...|+++++..+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999998886666554444 4556778888888877763
No 459
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.54 E-value=4.1e+02 Score=25.22 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=34.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHH-----HhCCCCchhH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCV-----KRGFEKEDIT 459 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 459 (668)
..+.|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.+..-++.+. +.|+..+...
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3455666666666666665554432 3445555566666666666444444443332 2355554443
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.29 E-value=3.6e+02 Score=24.47 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC---ChhHH--HHHHHHhhhcCChHHHHHHHHhCC---CCCC
Q 005943 519 LKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP---HLEHY--YCMVDLLGQAGCFDDAEQLIAEMP---FKPD 590 (668)
Q Consensus 519 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~---~~p~ 590 (668)
+.+...-++.|+--|.-...+.+|-+.|..-. ++.| |...+ ..-|......|+.++|.+.+.... +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 55666666666665555555555555554433 5555 23332 234566678888888888888772 2223
Q ss_pred HHHHHHH--HH--HHHhhCCHHHHHHHHHHHHh-cCCCCchhHHHHHHH
Q 005943 591 KTIWASM--LK--ACETHNNTKLVSIIAEQLLA-TSPEDPSKYVMLSNV 634 (668)
Q Consensus 591 ~~~~~~l--~~--~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 634 (668)
...+-.+ .. -..+.|..++|+++.+.=+. ..+.++..+..+=++
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~ 147 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERT 147 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 2222212 12 25677788888887776544 334444444444333
No 461
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.27 E-value=3.4e+02 Score=26.03 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI---TFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
..|..+..+.|+..+|.+.++++.+. .|-.. ....++.+|.....+.....++-+..
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666788888888888877663 23221 23457777777777766666665554
No 462
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.22 E-value=95 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=21.8
Q ss_pred hHHHHHHHhcccCchhhhhhhHHHHHHhc
Q 005943 5 RIVEALRHCGQRRSIKQGKSLHCRIIKYG 33 (668)
Q Consensus 5 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 33 (668)
.+..++..|..+|+++.|.++|..+++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 45677777777888888888888887654
No 463
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.78 E-value=4e+02 Score=24.90 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH-----HHHHHHHHhcccccCCCCChhHHHHH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV-----EEAWTIFTSMKPEYGLEPHLEHYYCM 565 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~p~~~~~~~l 565 (668)
...+++.+.+.+....|..+.+.+... +-=..+...++......... ......+..... -+......+..+
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~--ll~~f~~~l~Iv 160 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVIS--LLQEFPEYLEIV 160 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHH--HHHcCcchHHHH
Confidence 445666666666666777766666542 22233444444432221110 011111111110 000111223334
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHhc
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP-------SKYVMLSNVYATL 638 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~ 638 (668)
+++..|. ....=-.+|+..+ .| ..++.-|.+.|+.+.|-.++--+....+.+. ..-..+.....+.
T Consensus 161 v~C~RKt-E~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 161 VNCARKT-EVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHhh-HHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 4443332 2222234555554 22 2477778888999988877776665543332 3334566677888
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|+|+-+.++.+-+...+.
T Consensus 234 ~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALDP 251 (258)
T ss_pred ccHHHHHHHHHHHHHhCc
Confidence 999999999988887655
No 464
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.67 E-value=13 Score=35.34 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEE
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWI 664 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 664 (668)
....|.+++|++.+..+++++|.....|..-+.++.++++...|++-+....+.+. ...++-|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 44678999999999999999999999999999999999999999999999988877 66666553
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.64 E-value=95 Score=29.33 Aligned_cols=79 Identities=9% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 555 LEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWAS-MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 555 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
+.-|+..|...+....+.|.+.+.-.++.+. ...| |+..|-. ..--+..+++++.+..+|.+.+..+|++|.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3446667777666666777777777777766 4445 4444433 22225678899999999999999999999988765
Q ss_pred HH
Q 005943 632 SN 633 (668)
Q Consensus 632 ~~ 633 (668)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 54
No 466
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=33.37 E-value=4.9e+02 Score=29.55 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=80.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChh--HHHHhhhhh-hhhhcCCCchhhhhhhh
Q 005943 109 SAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLT--RKLFDQYSN-WAASAYGNVALWNSMLS 183 (668)
Q Consensus 109 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 183 (668)
..++.+ +..|+.+ +++.+.+.|..|+... -.+.+...+..|..+ +-+++.-.. ......+....+.+...
T Consensus 527 ~~L~~A-a~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~ 601 (823)
T PLN03192 527 SNLLTV-ASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA 601 (823)
T ss_pred hHHHHH-HHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence 334443 4567764 4445556676665533 234555556667666 333332111 11223344555666666
Q ss_pred cchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH
Q 005943 184 GGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL 263 (668)
Q Consensus 184 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 263 (668)
+...+.+.+.+.+-..+...-...+...+..|+.+-+..+++.-...+.. |..-.+. +...+..|+.
T Consensus 602 g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~------------d~~G~Tp-Lh~A~~~g~~ 668 (823)
T PLN03192 602 KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE------------DHQGATA-LQVAMAEDHV 668 (823)
T ss_pred CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCC------------CCCCCCH-HHHHHHCCcH
Confidence 66677777777666555555556777888999999888888765443322 1111122 2334556777
Q ss_pred HHHHHHHHHh
Q 005943 264 CEARKLFDQY 273 (668)
Q Consensus 264 ~~A~~~~~~~ 273 (668)
+-+.-+++.-
T Consensus 669 ~iv~~Ll~~G 678 (823)
T PLN03192 669 DMVRLLIMNG 678 (823)
T ss_pred HHHHHHHHcC
Confidence 7666666543
No 467
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.27 E-value=4.6e+02 Score=25.45 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=33.0
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccC--CCCChhH--HHHHHHHhhhcCChHHHHHHHHhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYG--LEPHLEH--YYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
++....+.++.++|.++++++..+.. -.|+... -..+.+++...|+..++.+.+++.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444555677788887777765322 1233333 234455666777777777666654
No 468
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.21 E-value=2e+02 Score=21.29 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccC
Q 005943 342 QVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRL 382 (668)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 382 (668)
++|+.....|+..|+.+|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555444433444444444443
No 469
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=32.97 E-value=2.4e+02 Score=22.13 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
.+.+.+.+...+.|+....+..++.-+...--|+++..--
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3556677777778887666666666555555555555443
No 470
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.90 E-value=4.5e+02 Score=25.16 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=36.7
Q ss_pred hHHHHHHHHHh---cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Q 005943 389 AWSGLIMGCTK---HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA 436 (668)
Q Consensus 389 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 436 (668)
.+..+++++.+ ..|++.|+-++..|++.|-.|....-..++.++...|
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34445666654 4788999999999999998888888777777776655
No 471
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.21 E-value=4.3e+02 Score=24.75 Aligned_cols=160 Identities=16% Similarity=0.056 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 259 NCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITL----LSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 259 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
+++++++|.+++..- ...+.+.++...|.++ ++-..+.+.++|......++..+...+.
T Consensus 2 ~~kky~eAidLL~~G-----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred ccccHHHHHHHHHHH-----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 356677777766554 1234555555544443 3333445666666665555555554433
Q ss_pred cchHHHHHHHHHHHH---hCCC--CccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 335 FNSRFALQVHGLIVT---SGYE--LDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 335 ~~~~~a~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
-+ ..-..+.+.+.+ .|-. -++.....+...|.+.+++.+|+.-|-.-.+++...+..++......|...++-
T Consensus 65 ~~-p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~d-- 141 (260)
T PF04190_consen 65 EE-PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEAD-- 141 (260)
T ss_dssp T--TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HH--
T ss_pred Cc-chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchh--
Confidence 21 122223333322 2222 256677778888888888888887665444333333322333333333332221
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR 451 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 451 (668)
.. ....+--|...++...|...++...+.
T Consensus 142 ------------lf-i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 142 ------------LF-IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------------HH-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------HH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 112222344556677777666555443
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.99 E-value=3.2e+02 Score=29.12 Aligned_cols=74 Identities=7% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCC------ChhhHHHHHHHHHhcCCcH--HHHHHHHH-HHHcCCCCcHHHHHHHHHH
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKK------DVVAWSGLIMGCTKHGLNS--LAYLLFRD-MINSNQDVNQFIISSVLKV 431 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~--~a~~~~~~-m~~~~~~~~~~~~~~ll~~ 431 (668)
+|.++|...|++-.+.++++.+... -...+|..++.+.+.|.++ +..+-..+ +....+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 3555566666666666655555432 1234555566666666543 11111111 1122245556666666655
Q ss_pred hcc
Q 005943 432 CSC 434 (668)
Q Consensus 432 ~~~ 434 (668)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 473
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.78 E-value=2.2e+02 Score=21.30 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
++...+.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555554443
No 474
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.52 E-value=3.6e+02 Score=23.72 Aligned_cols=105 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCC------CChhHHHHHHH-HHhcCC--ChhhHHH
Q 005943 20 KQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMAR------KNIVSWTTMVT-AYTSNK--RPNWAIR 90 (668)
Q Consensus 20 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~-~~~~~~--~~~~a~~ 90 (668)
++++++-.++. .+....-.....|++++|..-++++.+ .-...|..+.. +++.++ .+.+|.-
T Consensus 20 EE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Q ss_pred HHHHHHhcCCCCCC--CchHHHHHHHHh--------------ccCChHHHHHHHHHHHH
Q 005943 91 LYNHMLEYGSVEPN--GFMYSAVLKACS--------------LSGDLDLGRLIHERITR 133 (668)
Q Consensus 91 ~~~~m~~~~~~~p~--~~~~~~ll~~~~--------------~~~~~~~a~~~~~~~~~ 133 (668)
++..+...+.+.|+ ...+-.-+.+.+ +.|+++.|.+.++-|..
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 475
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.45 E-value=80 Score=27.27 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
++.|.+.++.....+|.|...+...+.++.++.++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf 41 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF 41 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc
Confidence 56788888888889999999999888887766444
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.26 E-value=3.2e+02 Score=24.65 Aligned_cols=71 Identities=11% Similarity=-0.042 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHcCCCHH-------HHHHHHHHhhhhhhcCCC--C-eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 005943 247 CFTLSALVDMYSNCNVLC-------EARKLFDQYSSWAASAYG--N-VALWNSMISGYVLNEQNEEAITLLSHIHSSGMC 316 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 316 (668)
...+.-+...|...|+.+ .|.+.|.+.-+.+..+.. + ......+.....+.|+.++|...|..+...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345566777777777744 444455544332211111 1 122223344566789999999999998877543
Q ss_pred C
Q 005943 317 I 317 (668)
Q Consensus 317 p 317 (668)
.
T Consensus 198 s 198 (214)
T PF09986_consen 198 S 198 (214)
T ss_pred C
Confidence 3
No 477
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.23 E-value=1.3e+02 Score=20.64 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=22.3
Q ss_pred cCCChhHHHHhhhhcC----CCChhHHHHHHHHH-----hcCCChhhHHHHH
Q 005943 50 DFTSLNDAHKLFDEMA----RKNIVSWTTMVTAY-----TSNKRPNWAIRLY 92 (668)
Q Consensus 50 ~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~-----~~~~~~~~a~~~~ 92 (668)
..|++-+|-+++|.+= .+....|..+|+.. .+.|+...|.+++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4566666666666551 12333455555543 3556666665543
No 478
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.87 E-value=2.6e+02 Score=23.27 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 287 WNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 287 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
-..++..+.+.++.-.|.++|+++.+.+...+..|....|..+...|-+
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3556777777777788888998888887777777766666666655543
No 479
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.55 E-value=80 Score=21.89 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=29.8
Q ss_pred CChhhHHHHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHc
Q 005943 1 MDLRRIVEALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYAD 50 (668)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 50 (668)
|+....+.++..++...-++++...+++..+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566667777776777777777777777763 444555555555544
No 480
>PRK09857 putative transposase; Provisional
Probab=30.52 E-value=3.7e+02 Score=25.75 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+..++....+.++.++..++++.+.+..|.......+++.-+.+.|.-++++++.++|...|.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344554445666766667777777666666666777888888888888888888888887776
No 481
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.48 E-value=5.6e+02 Score=25.58 Aligned_cols=55 Identities=15% Similarity=-0.028 Sum_probs=35.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhh--cCCCHHHHHHHHHh
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPNEIT----FLGVLSACR--HAGLVEEAWTIFTS 548 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~--~~g~~~~a~~~~~~ 548 (668)
.+..+.+.+++..|.++|+++....+.|.... |..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456677888889998888888765555443 333344443 24466777777765
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.24 E-value=90 Score=24.61 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=33.8
Q ss_pred HHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChh
Q 005943 9 ALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLN 55 (668)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 55 (668)
++......+..-.|.++++.+.+.+...+..|-...|+.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555677788888888888876677777777778888777544
No 483
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.98 E-value=5e+02 Score=24.81 Aligned_cols=22 Identities=5% Similarity=0.282 Sum_probs=16.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAI 508 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~ 508 (668)
....|..|+.+++..|+.+..+
T Consensus 320 hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHH
Confidence 4557888888999888877654
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.86 E-value=3e+02 Score=29.29 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNE------EAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
+|..+|...|++-.+..+++.+.....+.+.=...||..|+.+.+.|.++ .+.+.+++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888999999999999999986544333334556899999999999764 3334444333 55577888777
Q ss_pred HHHHHh
Q 005943 326 LKACIN 331 (668)
Q Consensus 326 l~~~~~ 331 (668)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 485
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.56 E-value=7.6e+02 Score=28.48 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=11.3
Q ss_pred HHHHHhcCChHHHHHHHccC
Q 005943 363 IDLYARLGNVKSALELFHRL 382 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~ 382 (668)
+.-+...+++.+|..+.++-
T Consensus 701 ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHhhccHHHHHHHHHHh
Confidence 34445566666666665543
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.52 E-value=1.2e+02 Score=28.13 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=10.0
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEM 514 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m 514 (668)
+...|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444445555555554444
No 487
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.42 E-value=9.6e+02 Score=27.96 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHhccCC
Q 005943 466 MYLKCGEIDDGLALFKFMP 484 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~ 484 (668)
+|...|+.-+|+..|.+..
T Consensus 929 ~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeecCCchHHHHHHHHHHh
Confidence 3566777777777776544
No 488
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.35 E-value=3.4e+02 Score=28.82 Aligned_cols=59 Identities=3% Similarity=-0.041 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..+.-.|....+.+.|.++++++.+.+|.++-.-.....+....|.-++|...+..+..
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 33334455556666666666666666666666555566666666666666666655543
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.18 E-value=1.6e+02 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=10.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhC
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444555555555555444
No 490
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=5.9e+02 Score=25.35 Aligned_cols=105 Identities=13% Similarity=0.221 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCCCCC-------C-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCC----c
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEMPFKP-------D-KTIWASMLKACETHNNTKLVSIIAEQLLATS---PED----P 625 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 625 (668)
.-..|.+.+...|+.++|..++.+.+++. . +....--+..|...+|+-.|--+.+++.... |+- .
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 34456778888999999999998885321 0 1111223455777889999888888877632 221 3
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEEE
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWIE 665 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 665 (668)
..|..++....+.+.|=.+-+.++.+-+.|- +...--|++
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 3567777777788888889999988888776 543333443
No 491
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.96 E-value=2e+02 Score=20.93 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=20.2
Q ss_pred CccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCC
Q 005943 37 DIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNK 83 (668)
Q Consensus 37 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 83 (668)
+...-...+..+++.++.+....+.+.+..+|...-...+.++.+-|
T Consensus 13 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp SHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333344444444444333333333333444444444444444444
No 492
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.75 E-value=2.5e+02 Score=21.02 Aligned_cols=60 Identities=12% Similarity=0.147 Sum_probs=38.4
Q ss_pred hhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCCh
Q 005943 22 GKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRP 85 (668)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 85 (668)
...+++.+.+.|+- +. .-.-...+...+.+.+.++++.++..+..+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvl-t~---~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDIL-TD---SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCC-CH---HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 44567777766632 22 22223334556778888888888888888888888888665543
No 493
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.67 E-value=2.9e+02 Score=21.62 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=14.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005943 107 MYSAVLKACSLSGDLDLGRLIHERITR 133 (668)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (668)
-|..|+..|...|..++|.+++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 345555555555555555555555544
No 494
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=28.64 E-value=1.3e+02 Score=18.22 Aligned_cols=29 Identities=7% Similarity=0.105 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.+|..|+.+-...++|++|.+=++...+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788899999999999999888777653
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.29 E-value=2.4e+02 Score=30.46 Aligned_cols=27 Identities=4% Similarity=0.149 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
+...++..|....+++..+++.+.+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344455555566666666666666665
No 496
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.18 E-value=5.3e+02 Score=24.51 Aligned_cols=113 Identities=7% Similarity=0.064 Sum_probs=70.3
Q ss_pred hHHHHHHhccCCC-----CCHhHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHHHHH
Q 005943 473 IDDGLALFKFMPE-----RDVVSWTGIIVGCGQ-NG-RAKEAIAYFQEMIQ-SRLKPNEITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 473 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
.-+|+.+|+.... .|......+++.... .+ ....-.++.+-+.. .|..++..+...++..+++.++|..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666662211 244444555555544 11 12222223333332 2456777777888888888888888888
Q ss_pred HHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+++......+..-|...|..+++...+.|+..-..+++++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88887754345557888888888888888888887777765
No 497
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=5.6e+02 Score=24.77 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccc---cCCCCChhHHHHHH-HHhh----hcCChHHHHHHHHhCCC---CCCHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPE---YGLEPHLEHYYCMV-DLLG----QAGCFDDAEQLIAEMPF---KPDKT 592 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~l~-~~~~----~~g~~~~A~~~~~~~~~---~p~~~ 592 (668)
.........|++-||.+.|.+.+.+...+ .|.+.|+..+..=+ -.|. -....++|..++++-+. +.-..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 35666677788899998888887765433 24555544332211 1222 22346677777776641 12233
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPE-DPSKYVMLSNV 634 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~ 634 (668)
+|..+- |....++++|-.+|-........ ....|...+.-
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 443333 34556788888888777764433 33455555543
No 498
>PRK12356 glutaminase; Reviewed
Probab=27.83 E-value=3.8e+02 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=15.4
Q ss_pred HhCCCCChhhHHHHHHHHHhCC
Q 005943 194 KRGFEKEDVTLTSLIDMYLKCG 215 (668)
Q Consensus 194 ~~g~~~~~~~~~~li~~~~~~g 215 (668)
+-|++|+...||.++..-...|
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g 112 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGG 112 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCC
Confidence 4588999999998875433333
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.79 E-value=1.6e+02 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=33.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 289 SMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 289 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
.++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555666677888888888887777777777666666666654
No 500
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.68 E-value=4.4e+02 Score=26.57 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=69.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCc-------chHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHH
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDV-------VSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQ 272 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (668)
+....-.++..+....++.+-++..+....++. .+.-.++ .-...-.|++.++-.||+..|+++++.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~L------GYFSligLlRvh~LLGDY~~Alk~l~~ 147 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKML------GYFSLIGLLRVHCLLGDYYQALKVLEN 147 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHh------hHHHHHHHHHHHHhccCHHHHHHHhhc
Confidence 444444556667777777777766666443222 2211121 223455688899999999999999988
Q ss_pred hhhhhhc-----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 005943 273 YSSWAAS-----AYGNVALWNSMISGYVLNEQNEEAITLLSHIH 311 (668)
Q Consensus 273 ~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 311 (668)
+.-...+ +.-.+.+|..+.-+|.-.+++.+|++.|....
T Consensus 148 idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 148 IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432221 12245667778888999999999999998764
Done!