Query 005943
Match_columns 668
No_of_seqs 554 out of 3251
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 11:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.4E-39 4.9E-44 348.5 33.6 506 47-658 62-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.8E-38 2.3E-42 335.4 29.4 181 456-637 406-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.8E-32 244.2 19.7 184 388-572 27-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.2E-27 4.2E-32 243.9 18.6 215 87-368 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-25 8.6E-30 224.0 35.2 374 208-640 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-24 1.8E-28 214.3 35.8 354 254-656 6-370 (388)
7 2gw1_A Mitochondrial precursor 99.9 5.6E-22 1.9E-26 207.8 32.2 397 247-656 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.1E-22 7.2E-27 211.1 28.8 413 199-632 37-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.4E-21 2.9E-25 200.0 32.4 430 200-656 24-493 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5.5E-21 1.9E-25 196.5 29.9 335 246-650 25-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.8E-20 9.4E-25 196.1 30.1 447 69-630 25-501 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 9.9E-20 3.4E-24 187.1 26.8 296 356-657 26-361 (450)
13 1xi4_A Clathrin heavy chain; a 99.8 2.3E-16 8E-21 170.1 49.9 412 173-648 951-1378(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 2.8E-15 9.6E-20 161.9 50.1 250 368-648 1088-1339(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1.1E-21 162.8 29.8 323 246-638 2-353 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.6E-17 5.4E-22 164.9 26.7 290 361-656 8-337 (359)
17 3hym_B Cell division cycle pro 99.8 3.8E-17 1.3E-21 160.1 24.3 287 353-642 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 9.6E-17 3.3E-21 157.2 24.5 266 385-656 20-301 (330)
19 1b89_A Protein (clathrin heavy 99.8 9.5E-17 3.2E-21 155.5 21.9 287 258-585 14-308 (449)
20 2ooe_A Cleavage stimulation fa 99.7 8.3E-15 2.8E-19 153.3 38.4 396 246-656 12-494 (530)
21 1fch_A Peroxisomal targeting s 99.7 7.6E-17 2.6E-21 160.6 21.1 277 367-650 36-355 (368)
22 2xm6_A Protein corresponding t 99.7 5.5E-15 1.9E-19 153.0 34.9 366 246-637 38-452 (490)
23 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.5E-20 143.8 26.6 271 364-648 7-288 (291)
24 2xm6_A Protein corresponding t 99.7 4.8E-14 1.7E-18 145.9 37.0 351 283-656 38-434 (490)
25 4eqf_A PEX5-related protein; a 99.7 2.3E-16 7.8E-21 156.9 18.7 261 386-650 64-352 (365)
26 2ooe_A Cleavage stimulation fa 99.7 1.8E-14 6.2E-19 150.7 33.7 399 200-623 12-495 (530)
27 4g1t_A Interferon-induced prot 99.7 1.7E-15 5.7E-20 156.5 25.4 372 246-664 50-470 (472)
28 1b89_A Protein (clathrin heavy 99.7 3.7E-17 1.3E-21 158.3 11.3 277 338-648 20-305 (449)
29 3mkr_A Coatomer subunit epsilo 99.7 3.9E-16 1.3E-20 148.6 18.1 251 394-659 6-269 (291)
30 3cv0_A Peroxisome targeting si 99.7 8.8E-16 3E-20 150.1 20.0 258 390-652 24-313 (327)
31 1fch_A Peroxisomal targeting s 99.7 9.7E-16 3.3E-20 152.6 19.7 299 257-618 35-357 (368)
32 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5.2E-20 151.0 19.0 233 421-656 64-312 (365)
33 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-17 1.8E-21 169.7 6.3 116 38-154 127-250 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.5E-21 165.6 8.5 137 246-383 126-263 (1134)
35 2pl2_A Hypothetical conserved 99.6 1.3E-14 4.3E-19 131.9 16.4 194 454-652 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.6 3.9E-14 1.3E-18 133.0 18.4 208 434-655 17-237 (258)
37 4g1t_A Interferon-induced prot 99.6 2.5E-13 8.4E-18 140.2 24.0 396 199-632 49-471 (472)
38 3cv0_A Peroxisome targeting si 99.6 7E-14 2.4E-18 136.5 18.6 229 423-656 22-271 (327)
39 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-13 1.3E-17 136.8 23.2 377 207-654 9-421 (452)
40 3uq3_A Heat shock protein STI1 99.6 8.9E-14 3E-18 130.5 16.8 234 388-634 6-256 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-13 4.4E-18 130.9 17.5 240 400-648 18-269 (275)
42 2ho1_A Type 4 fimbrial biogene 99.5 7.1E-13 2.4E-17 123.9 20.2 199 457-657 37-241 (252)
43 2vq2_A PILW, putative fimbrial 99.5 9.7E-13 3.3E-17 120.4 19.7 199 456-656 7-213 (225)
44 1ouv_A Conserved hypothetical 99.5 4.6E-12 1.6E-16 119.9 24.3 224 386-656 5-253 (273)
45 2q7f_A YRRB protein; TPR, prot 99.5 3.6E-13 1.2E-17 125.1 15.9 198 456-656 22-224 (243)
46 3u4t_A TPR repeat-containing p 99.5 6E-13 2.1E-17 126.0 17.3 174 461-639 78-269 (272)
47 3u4t_A TPR repeat-containing p 99.5 1.9E-12 6.4E-17 122.6 20.3 222 432-658 13-254 (272)
48 2ho1_A Type 4 fimbrial biogene 99.5 4E-12 1.4E-16 118.7 21.3 206 387-630 37-248 (252)
49 2q7f_A YRRB protein; TPR, prot 99.5 5.5E-13 1.9E-17 123.8 15.3 208 428-639 29-241 (243)
50 3vtx_A MAMA; tetratricopeptide 99.5 4.2E-12 1.4E-16 112.0 18.5 166 487-656 4-172 (184)
51 2h6f_A Protein farnesyltransfe 99.4 5E-12 1.7E-16 124.3 20.5 245 387-638 97-366 (382)
52 3e4b_A ALGK; tetratricopeptide 99.4 1E-11 3.6E-16 126.2 23.6 346 289-656 8-389 (452)
53 2vq2_A PILW, putative fimbrial 99.4 8E-12 2.7E-16 114.3 20.5 196 432-631 18-222 (225)
54 2h6f_A Protein farnesyltransfe 99.4 1.9E-12 6.3E-17 127.4 17.0 227 423-656 98-350 (382)
55 1ouv_A Conserved hypothetical 99.4 1.7E-11 5.8E-16 116.0 22.9 227 355-625 5-256 (273)
56 4a1s_A PINS, partner of inscut 99.4 7.9E-13 2.7E-17 133.7 14.0 262 392-654 53-372 (411)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-12 5.6E-17 123.2 14.0 220 432-656 15-246 (275)
58 4abn_A Tetratricopeptide repea 99.4 9.4E-13 3.2E-17 134.8 13.0 193 454-651 99-318 (474)
59 3sf4_A G-protein-signaling mod 99.4 4.2E-12 1.4E-16 128.0 17.7 291 356-646 9-368 (406)
60 2pl2_A Hypothetical conserved 99.4 3.8E-12 1.3E-16 115.5 14.9 206 386-618 4-212 (217)
61 3ro2_A PINS homolog, G-protein 99.4 3.9E-12 1.4E-16 124.4 15.9 262 394-655 12-333 (338)
62 4e6h_A MRNA 3'-END-processing 99.3 5.7E-09 1.9E-13 109.7 36.2 217 404-625 326-575 (679)
63 3sf4_A G-protein-signaling mod 99.3 4.6E-12 1.6E-16 127.7 12.5 267 317-585 7-333 (406)
64 4e6h_A MRNA 3'-END-processing 99.3 2.7E-09 9.3E-14 112.1 31.6 408 246-658 65-574 (679)
65 4gyw_A UDP-N-acetylglucosamine 99.3 5E-11 1.7E-15 126.8 17.9 162 488-654 9-174 (723)
66 3ulq_A Response regulator aspa 99.3 1.6E-11 5.5E-16 122.6 13.2 225 430-655 111-369 (383)
67 3as5_A MAMA; tetratricopeptide 99.3 6.6E-11 2.2E-15 104.3 15.5 163 491-656 11-175 (186)
68 3nf1_A KLC 1, kinesin light ch 99.3 4.3E-12 1.5E-16 122.7 8.3 238 387-654 27-307 (311)
69 4a1s_A PINS, partner of inscut 99.3 1.5E-11 5.3E-16 124.1 12.6 234 390-623 89-375 (411)
70 2ond_A Cleavage stimulation fa 99.3 2.3E-10 7.8E-15 110.1 20.2 217 404-625 33-275 (308)
71 3vtx_A MAMA; tetratricopeptide 99.3 6E-11 2.1E-15 104.5 14.7 167 456-625 4-175 (184)
72 4i17_A Hypothetical protein; T 99.2 1.6E-10 5.5E-15 105.8 16.1 190 456-657 6-212 (228)
73 4abn_A Tetratricopeptide repea 99.2 1.2E-10 4E-15 119.3 15.1 179 473-656 84-289 (474)
74 1hz4_A MALT regulatory protein 99.2 3.8E-09 1.3E-13 104.9 25.6 261 362-623 20-325 (373)
75 3ro2_A PINS homolog, G-protein 99.2 8.6E-11 2.9E-15 114.8 13.4 259 365-623 14-335 (338)
76 2ond_A Cleavage stimulation fa 99.2 2.6E-09 9.1E-14 102.6 23.4 213 439-656 33-272 (308)
77 3ulq_A Response regulator aspa 99.2 3.1E-09 1E-13 105.9 24.4 164 458-621 185-369 (383)
78 3nf1_A KLC 1, kinesin light ch 99.2 3.8E-11 1.3E-15 115.9 9.7 239 355-623 26-310 (311)
79 3as5_A MAMA; tetratricopeptide 99.2 8.1E-10 2.8E-14 97.2 17.5 168 457-627 8-180 (186)
80 4i17_A Hypothetical protein; T 99.2 6.7E-10 2.3E-14 101.6 17.1 205 420-636 5-225 (228)
81 3q15_A PSP28, response regulat 99.2 2E-10 6.7E-15 114.4 13.9 222 431-653 110-364 (378)
82 3mv2_B Coatomer subunit epsilo 99.1 5E-09 1.7E-13 97.3 19.6 242 363-626 20-288 (310)
83 3q15_A PSP28, response regulat 99.1 2E-08 6.9E-13 99.7 22.9 224 397-620 111-365 (378)
84 3edt_B KLC 2, kinesin light ch 99.0 1.5E-09 5E-14 103.0 13.3 222 433-654 12-281 (283)
85 1hz4_A MALT regulatory protein 99.0 1.6E-08 5.5E-13 100.3 21.0 261 393-653 20-321 (373)
86 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.2E-09 2.5E-13 94.4 16.7 180 459-658 6-217 (225)
87 3qky_A Outer membrane assembly 99.0 9.7E-09 3.3E-13 96.1 16.5 182 457-656 15-226 (261)
88 2fo7_A Synthetic consensus TPR 99.0 7E-09 2.4E-13 85.5 13.7 128 526-655 4-133 (136)
89 4ga2_A E3 SUMO-protein ligase 99.0 8.2E-10 2.8E-14 93.1 7.4 140 496-640 5-149 (150)
90 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.4E-12 91.2 19.3 244 394-659 20-287 (310)
91 4gyw_A UDP-N-acetylglucosamine 99.0 2.3E-09 7.9E-14 114.1 12.1 162 456-622 8-176 (723)
92 3qou_A Protein YBBN; thioredox 99.0 2.1E-08 7E-13 95.1 17.4 172 476-652 105-282 (287)
93 1qqe_A Vesicular transport pro 99.0 1.4E-09 4.9E-14 103.5 9.2 200 437-651 32-266 (292)
94 3qky_A Outer membrane assembly 99.0 8.2E-09 2.8E-13 96.6 14.2 205 419-645 12-252 (261)
95 4ga2_A E3 SUMO-protein ligase 98.9 2.7E-09 9.3E-14 89.9 9.0 127 529-658 3-133 (150)
96 1qqe_A Vesicular transport pro 98.9 1E-08 3.5E-13 97.6 14.0 201 432-635 47-284 (292)
97 2r5s_A Uncharacterized protein 98.9 1.5E-08 5.3E-13 88.1 13.5 158 491-653 9-172 (176)
98 2fo7_A Synthetic consensus TPR 98.9 3.5E-08 1.2E-12 81.2 14.3 132 490-624 3-136 (136)
99 2pzi_A Probable serine/threoni 98.9 8.5E-09 2.9E-13 110.4 12.2 168 468-640 402-583 (681)
100 3edt_B KLC 2, kinesin light ch 98.9 3E-08 1E-12 93.9 14.8 164 457-620 85-281 (283)
101 3gyz_A Chaperone protein IPGC; 98.8 1.8E-08 6.3E-13 84.2 11.0 103 554-656 30-135 (151)
102 2vsy_A XCC0866; transferase, g 98.8 2.8E-08 9.6E-13 104.6 15.1 158 470-632 2-169 (568)
103 3rjv_A Putative SEL1 repeat pr 98.8 6.3E-07 2.2E-11 80.4 20.1 161 487-656 17-199 (212)
104 2vgx_A Chaperone SYCD; alterna 98.8 1.7E-08 5.7E-13 84.7 8.7 98 559-656 21-120 (148)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5.2E-12 84.7 15.6 126 526-656 9-152 (213)
106 4gco_A Protein STI-1; structur 98.8 5.1E-08 1.7E-12 79.0 10.8 106 525-633 15-123 (126)
107 3urz_A Uncharacterized protein 98.7 7.3E-08 2.5E-12 86.3 12.0 127 492-624 58-190 (208)
108 3u3w_A Transcriptional activat 98.7 8.3E-07 2.8E-11 84.4 19.4 163 491-653 78-265 (293)
109 2ifu_A Gamma-SNAP; membrane fu 98.7 1.6E-07 5.3E-12 90.1 14.1 219 400-647 4-254 (307)
110 2pzi_A Probable serine/threoni 98.7 3.5E-08 1.2E-12 105.7 10.0 152 499-656 402-565 (681)
111 4gco_A Protein STI-1; structur 98.7 1.2E-07 4.2E-12 76.7 11.0 103 554-656 7-112 (126)
112 2vsy_A XCC0866; transferase, g 98.7 1.8E-07 6.3E-12 98.4 15.4 150 502-656 3-159 (568)
113 2qfc_A PLCR protein; TPR, HTH, 98.7 4.3E-07 1.5E-11 86.4 16.7 164 490-653 77-265 (293)
114 3urz_A Uncharacterized protein 98.7 1.6E-07 5.3E-12 84.2 12.7 158 493-656 9-188 (208)
115 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.7E-12 79.2 10.0 98 559-656 18-117 (142)
116 3qou_A Protein YBBN; thioredox 98.7 2.4E-07 8.2E-12 87.7 13.5 134 520-656 114-250 (287)
117 3dra_A Protein farnesyltransfe 98.7 1.6E-06 5.6E-11 81.5 18.7 148 502-653 124-286 (306)
118 1a17_A Serine/threonine protei 98.6 3.5E-07 1.2E-11 78.4 12.9 127 525-653 15-145 (166)
119 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.7E-07 9.4E-12 83.8 12.4 185 421-626 3-219 (225)
120 3rjv_A Putative SEL1 repeat pr 98.6 1.6E-06 5.4E-11 77.8 17.1 174 440-623 4-200 (212)
121 2uy1_A Cleavage stimulation fa 98.6 2.8E-06 9.5E-11 86.7 20.9 95 248-349 16-117 (493)
122 2r5s_A Uncharacterized protein 98.6 3E-07 1E-11 79.8 11.9 156 459-619 8-172 (176)
123 2vyi_A SGTA protein; chaperone 98.6 4.7E-07 1.6E-11 73.8 12.0 117 524-642 13-131 (131)
124 1na0_A Designed protein CTPR3; 98.6 4.9E-07 1.7E-11 72.9 12.0 115 523-639 9-125 (125)
125 2uy1_A Cleavage stimulation fa 98.6 8E-05 2.7E-09 75.9 30.6 371 214-619 7-412 (493)
126 2lni_A Stress-induced-phosphop 98.6 5.4E-07 1.9E-11 73.7 12.1 114 524-640 17-133 (133)
127 2e2e_A Formate-dependent nitri 98.6 1.6E-07 5.5E-12 81.6 9.2 125 498-626 20-150 (177)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.1E-06 3.6E-11 79.1 14.9 91 460-551 9-99 (213)
129 4f3v_A ESX-1 secretion system 98.6 7.3E-07 2.5E-11 81.7 13.3 125 529-656 108-239 (282)
130 1p5q_A FKBP52, FK506-binding p 98.6 2.6E-07 8.9E-12 89.6 11.1 159 472-652 128-292 (336)
131 3dra_A Protein farnesyltransfe 98.5 2.9E-05 9.8E-10 73.0 23.7 226 402-633 48-301 (306)
132 2kck_A TPR repeat; tetratricop 98.5 7.3E-07 2.5E-11 70.3 10.9 99 558-656 5-108 (112)
133 3upv_A Heat shock protein STI1 98.5 6.5E-07 2.2E-11 72.6 10.5 96 560-655 5-102 (126)
134 1hxi_A PEX5, peroxisome target 98.5 5.3E-07 1.8E-11 72.4 9.4 97 560-656 18-116 (121)
135 3gyz_A Chaperone protein IPGC; 98.5 6.8E-07 2.3E-11 74.6 10.4 104 519-625 31-138 (151)
136 2ifu_A Gamma-SNAP; membrane fu 98.5 5.2E-07 1.8E-11 86.4 10.8 200 434-656 3-225 (307)
137 3u3w_A Transcriptional activat 98.5 1.3E-05 4.6E-10 75.9 19.9 157 463-619 81-265 (293)
138 2c2l_A CHIP, carboxy terminus 98.5 1.8E-07 6.2E-12 88.2 6.6 191 456-654 3-199 (281)
139 3sz7_A HSC70 cochaperone (SGT) 98.4 1E-06 3.5E-11 75.3 10.5 109 522-633 10-121 (164)
140 3q49_B STIP1 homology and U bo 98.4 1.9E-06 6.5E-11 70.9 11.8 97 558-654 8-106 (137)
141 4f3v_A ESX-1 secretion system 98.4 7.6E-06 2.6E-10 75.0 16.5 136 492-632 106-248 (282)
142 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-06 5.8E-11 68.9 11.0 107 525-633 6-114 (118)
143 2lni_A Stress-induced-phosphop 98.4 1.9E-06 6.4E-11 70.5 11.4 99 558-656 15-115 (133)
144 1na0_A Designed protein CTPR3; 98.4 2.1E-06 7.2E-11 69.1 11.4 98 559-656 9-108 (125)
145 2qfc_A PLCR protein; TPR, HTH, 98.4 3.6E-06 1.2E-10 79.9 14.5 162 458-619 76-265 (293)
146 2vgx_A Chaperone SYCD; alterna 98.4 5.9E-07 2E-11 75.1 7.8 114 511-629 10-127 (148)
147 2fbn_A 70 kDa peptidylprolyl i 98.4 2.2E-06 7.4E-11 76.0 11.8 169 467-656 14-188 (198)
148 2dba_A Smooth muscle cell asso 98.4 3.5E-06 1.2E-10 70.3 12.4 110 523-635 28-143 (148)
149 2dba_A Smooth muscle cell asso 98.4 5.2E-06 1.8E-10 69.3 13.4 99 558-656 27-130 (148)
150 3gw4_A Uncharacterized protein 98.4 5.5E-06 1.9E-10 73.6 14.1 129 525-653 28-175 (203)
151 2e2e_A Formate-dependent nitri 98.4 1.6E-06 5.6E-11 75.2 9.9 122 533-656 20-146 (177)
152 1elw_A TPR1-domain of HOP; HOP 98.4 5E-06 1.7E-10 66.0 12.0 98 559-656 4-103 (118)
153 4gcn_A Protein STI-1; structur 98.3 2.6E-06 8.8E-11 69.0 9.5 93 561-653 10-111 (127)
154 2vyi_A SGTA protein; chaperone 98.3 4.3E-06 1.5E-10 67.9 11.0 99 558-656 11-111 (131)
155 2xev_A YBGF; tetratricopeptide 98.3 2.1E-06 7.4E-11 69.7 8.8 100 529-631 8-116 (129)
156 3upv_A Heat shock protein STI1 98.3 4.4E-06 1.5E-10 67.5 10.5 109 525-636 6-123 (126)
157 2xcb_A PCRH, regulatory protei 98.3 3.6E-06 1.2E-10 69.8 9.4 105 525-632 20-127 (142)
158 3gw4_A Uncharacterized protein 98.3 7.5E-06 2.6E-10 72.7 12.2 152 469-620 4-176 (203)
159 1a17_A Serine/threonine protei 98.3 1.3E-05 4.3E-10 68.4 13.1 128 489-619 14-145 (166)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 6.1E-06 2.1E-10 70.4 10.9 93 489-585 12-105 (164)
161 3k9i_A BH0479 protein; putativ 98.2 9.3E-07 3.2E-11 70.5 5.2 91 536-627 3-97 (117)
162 2hr2_A Hypothetical protein; a 98.2 4.2E-06 1.4E-10 68.9 9.0 64 593-656 59-133 (159)
163 1elr_A TPR2A-domain of HOP; HO 98.2 6.3E-06 2.1E-10 66.9 9.4 112 524-638 5-125 (131)
164 3q49_B STIP1 homology and U bo 98.2 7.3E-06 2.5E-10 67.3 9.7 112 522-636 8-127 (137)
165 3rkv_A Putative peptidylprolyl 98.2 5.6E-06 1.9E-10 70.5 9.2 111 524-634 12-141 (162)
166 1wao_1 Serine/threonine protei 98.2 5.6E-06 1.9E-10 84.3 10.1 117 530-649 13-134 (477)
167 3q7a_A Farnesyltransferase alp 98.2 0.00055 1.9E-08 65.0 22.9 171 398-574 65-257 (349)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.5E-06 2.6E-10 83.0 10.6 159 471-651 248-412 (457)
169 3q7a_A Farnesyltransferase alp 98.1 7.5E-05 2.6E-09 70.9 16.6 229 402-653 52-330 (349)
170 2fbn_A 70 kDa peptidylprolyl i 98.1 2.4E-06 8.2E-11 75.7 6.0 121 534-656 15-153 (198)
171 2if4_A ATFKBP42; FKBP-like, al 98.1 3.8E-06 1.3E-10 81.4 7.6 149 488-656 179-330 (338)
172 2xev_A YBGF; tetratricopeptide 98.1 2.6E-05 9E-10 63.1 11.5 94 563-656 6-107 (129)
173 1elr_A TPR2A-domain of HOP; HO 98.1 8.1E-06 2.8E-10 66.3 8.2 95 490-585 6-105 (131)
174 2c2l_A CHIP, carboxy terminus 98.1 2.1E-05 7.2E-10 73.9 11.6 108 522-632 3-113 (281)
175 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 5.7E-10 62.2 9.4 99 525-625 8-111 (112)
176 3dss_A Geranylgeranyl transfer 98.1 0.00028 9.4E-09 66.7 18.9 179 474-656 91-306 (331)
177 3ro3_A PINS homolog, G-protein 98.1 1.1E-05 3.9E-10 68.3 8.9 129 526-654 12-158 (164)
178 1ihg_A Cyclophilin 40; ppiase 98.1 1.5E-05 5.3E-10 77.9 10.5 137 489-647 224-363 (370)
179 4gcn_A Protein STI-1; structur 98.1 1.8E-05 6E-10 64.0 9.0 58 491-550 11-69 (127)
180 1p5q_A FKBP52, FK506-binding p 98.0 2.6E-05 9E-10 75.4 11.7 138 436-578 127-283 (336)
181 4b4t_Q 26S proteasome regulato 98.0 3.8E-05 1.3E-09 77.6 13.4 163 491-653 58-244 (434)
182 3k9i_A BH0479 protein; putativ 98.0 8.1E-06 2.8E-10 64.9 6.5 86 571-656 2-92 (117)
183 2l6j_A TPR repeat-containing p 98.0 3.7E-06 1.3E-10 66.1 4.0 93 558-650 3-103 (111)
184 3rkv_A Putative peptidylprolyl 98.0 1.7E-05 6E-10 67.4 8.3 63 593-655 65-127 (162)
185 1hxi_A PEX5, peroxisome target 98.0 2.8E-05 9.4E-10 62.2 8.5 95 528-625 22-119 (121)
186 1dce_A Protein (RAB geranylger 98.0 0.00018 6.2E-09 74.5 16.7 169 471-643 43-244 (567)
187 3dss_A Geranylgeranyl transfer 97.9 0.0009 3.1E-08 63.2 19.1 192 438-635 90-319 (331)
188 3ma5_A Tetratricopeptide repea 97.9 6.1E-05 2.1E-09 57.7 9.0 65 590-654 6-70 (100)
189 4b4t_Q 26S proteasome regulato 97.9 0.00014 4.7E-09 73.4 14.2 160 495-654 11-204 (434)
190 3n71_A Histone lysine methyltr 97.9 4.2E-05 1.5E-09 77.2 9.8 123 533-655 319-465 (490)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 3.9E-05 1.3E-09 74.2 9.1 149 457-625 179-333 (338)
192 3ro3_A PINS homolog, G-protein 97.8 7.1E-05 2.4E-09 63.2 9.6 132 490-621 11-159 (164)
193 2hr2_A Hypothetical protein; a 97.8 2.1E-05 7E-10 64.8 5.6 74 561-634 59-145 (159)
194 1na3_A Designed protein CTPR2; 97.8 0.00011 3.9E-09 54.8 9.4 81 559-639 9-91 (91)
195 2kat_A Uncharacterized protein 97.8 7.3E-05 2.5E-09 59.0 8.6 64 559-622 19-84 (115)
196 1ihg_A Cyclophilin 40; ppiase 97.7 8.9E-05 3.1E-09 72.5 9.4 114 524-656 224-338 (370)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 8E-05 2.7E-09 75.4 9.3 66 591-656 317-382 (457)
198 1zu2_A Mitochondrial import re 97.7 3.5E-05 1.2E-09 63.3 5.3 86 571-656 14-122 (158)
199 3bee_A Putative YFRE protein; 97.7 0.00027 9.3E-09 52.8 9.3 71 588-658 3-76 (93)
200 1wao_1 Serine/threonine protei 97.6 5.9E-05 2E-09 76.7 6.8 94 563-656 10-105 (477)
201 2l6j_A TPR repeat-containing p 97.6 0.00019 6.5E-09 56.0 8.4 68 589-656 2-69 (111)
202 1klx_A Cysteine rich protein B 97.6 0.00042 1.5E-08 56.6 10.0 88 566-655 32-127 (138)
203 1na3_A Designed protein CTPR2; 97.5 0.00039 1.3E-08 51.7 8.2 67 590-656 8-74 (91)
204 1dce_A Protein (RAB geranylger 97.4 0.0022 7.7E-08 66.4 15.3 150 502-656 43-223 (567)
205 1wy6_A Hypothetical protein ST 97.4 0.014 4.9E-07 45.1 15.0 142 498-658 17-158 (172)
206 2kat_A Uncharacterized protein 97.3 0.00053 1.8E-08 53.9 7.4 77 578-654 4-82 (115)
207 2kc7_A BFR218_protein; tetratr 97.2 0.00099 3.4E-08 50.5 7.8 79 565-651 6-87 (99)
208 3lvg_A Clathrin heavy chain 1; 97.2 4.5E-05 1.5E-09 73.4 -0.2 117 246-376 198-324 (624)
209 2kc7_A BFR218_protein; tetratr 97.2 0.00043 1.5E-08 52.6 5.2 58 599-656 8-66 (99)
210 3n71_A Histone lysine methyltr 97.1 0.00086 3E-08 67.7 7.9 88 567-654 317-422 (490)
211 1klx_A Cysteine rich protein B 97.1 0.0071 2.4E-07 49.2 11.9 112 502-622 9-128 (138)
212 1zu2_A Mitochondrial import re 97.0 0.0004 1.4E-08 57.0 3.8 73 576-655 63-148 (158)
213 3u64_A Protein TP_0956; tetrat 97.0 0.022 7.6E-07 51.6 15.2 86 575-660 179-276 (301)
214 3qww_A SET and MYND domain-con 97.0 0.00098 3.3E-08 66.1 7.1 60 593-652 342-409 (433)
215 3lvg_A Clathrin heavy chain 1; 97.0 0.00077 2.6E-08 65.1 5.6 150 362-545 384-534 (624)
216 3qwp_A SET and MYND domain-con 96.9 0.002 6.8E-08 64.0 7.8 100 530-629 294-414 (429)
217 3ma5_A Tetratricopeptide repea 96.8 0.0026 8.9E-08 48.3 6.8 62 488-550 7-68 (100)
218 3ly7_A Transcriptional activat 96.8 0.0015 5.1E-08 61.9 6.3 68 589-657 275-342 (372)
219 3qww_A SET and MYND domain-con 96.8 0.0059 2E-07 60.5 10.4 94 535-628 310-424 (433)
220 1qsa_A Protein (soluble lytic 96.7 0.71 2.4E-05 47.8 26.3 251 359-619 75-347 (618)
221 3qwp_A SET and MYND domain-con 96.7 0.012 4E-07 58.4 11.9 60 593-652 331-398 (429)
222 3ly7_A Transcriptional activat 96.4 0.073 2.5E-06 50.5 14.8 141 487-630 193-348 (372)
223 1pc2_A Mitochondria fission pr 96.4 0.0099 3.4E-07 48.2 7.2 91 538-630 13-110 (152)
224 3mkq_A Coatomer beta'-subunit; 96.4 0.17 5.7E-06 55.5 19.8 114 365-513 661-774 (814)
225 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.6E-06 56.2 18.7 47 467-515 662-708 (814)
226 2v5f_A Prolyl 4-hydroxylase su 96.3 0.031 1.1E-06 42.5 9.5 73 560-632 6-87 (104)
227 4ady_A RPN2, 26S proteasome re 96.2 1.9 6.5E-05 46.5 32.1 266 253-525 380-663 (963)
228 3bee_A Putative YFRE protein; 96.0 0.061 2.1E-06 39.8 9.4 69 556-624 3-76 (93)
229 1pc2_A Mitochondria fission pr 95.9 0.026 9E-07 45.7 7.5 68 589-656 30-102 (152)
230 2v5f_A Prolyl 4-hydroxylase su 95.8 0.045 1.5E-06 41.6 8.3 67 590-656 4-77 (104)
231 3mkq_B Coatomer subunit alpha; 95.2 1.1 3.7E-05 37.4 15.0 99 499-616 16-114 (177)
232 4h7y_A Dual specificity protei 94.9 0.17 5.7E-06 40.4 8.9 50 605-654 74-123 (161)
233 4gns_B Protein CSD3, chitin bi 94.8 0.065 2.2E-06 56.4 8.3 53 599-651 345-397 (754)
234 3u64_A Protein TP_0956; tetrat 94.6 0.04 1.4E-06 50.0 5.3 64 560-623 200-272 (301)
235 3mkq_B Coatomer subunit alpha; 94.4 1.9 6.5E-05 35.9 15.2 83 456-549 33-115 (177)
236 1nzn_A CGI-135 protein, fissio 94.1 0.16 5.5E-06 39.5 6.9 92 537-630 15-113 (126)
237 1nzn_A CGI-135 protein, fissio 93.8 0.39 1.3E-05 37.3 8.6 79 504-585 17-100 (126)
238 4b4t_P 26S proteasome regulato 93.3 4 0.00014 40.4 17.5 170 204-385 140-324 (445)
239 1wy6_A Hypothetical protein ST 92.4 3.2 0.00011 32.5 12.5 61 491-552 94-154 (172)
240 4h7y_A Dual specificity protei 92.1 1 3.5E-05 36.0 8.8 60 573-632 74-135 (161)
241 1y8m_A FIS1; mitochondria, unk 91.5 2.3 8E-05 33.7 10.3 74 556-629 36-115 (144)
242 3txn_A 26S proteasome regulato 90.6 12 0.00041 36.0 16.6 163 423-585 20-207 (394)
243 3o48_A Mitochondria fission 1 90.6 0.74 2.5E-05 35.9 6.6 74 556-629 37-116 (134)
244 4ady_A RPN2, 26S proteasome re 90.5 22 0.00076 38.5 34.4 248 364-618 382-656 (963)
245 2wpv_A GET4, UPF0363 protein Y 89.9 12 0.00041 34.6 21.0 148 208-399 20-177 (312)
246 4b4t_P 26S proteasome regulato 89.4 11 0.00039 37.2 16.0 91 562-652 140-245 (445)
247 2ff4_A Probable regulatory pro 89.1 1.2 4E-05 43.4 8.5 59 595-653 175-233 (388)
248 3lpz_A GET4 (YOR164C homolog); 88.7 15 0.00053 34.1 19.9 164 459-653 37-215 (336)
249 1v54_E Cytochrome C oxidase po 87.8 3.4 0.00011 30.3 7.7 57 577-633 28-87 (109)
250 4fhn_B Nucleoporin NUP120; pro 87.1 21 0.00072 40.4 18.2 139 428-574 818-986 (1139)
251 3ffl_A Anaphase-promoting comp 86.8 2.1 7.1E-05 35.0 7.1 114 461-588 24-151 (167)
252 1v54_E Cytochrome C oxidase po 86.5 2.5 8.5E-05 30.9 6.5 63 503-567 25-87 (109)
253 3ffl_A Anaphase-promoting comp 86.3 5 0.00017 32.8 9.1 122 518-651 13-148 (167)
254 3lpz_A GET4 (YOR164C homolog); 86.2 22 0.00074 33.2 21.6 132 250-399 38-179 (336)
255 2wpv_A GET4, UPF0363 protein Y 86.2 21 0.00072 33.0 17.0 167 359-551 36-216 (312)
256 1y8m_A FIS1; mitochondria, unk 85.8 10 0.00034 30.1 10.2 69 588-656 36-108 (144)
257 2uwj_G Type III export protein 85.7 3.4 0.00012 30.0 6.8 87 18-110 21-107 (115)
258 4gns_B Protein CSD3, chitin bi 85.7 2.9 9.8E-05 44.2 9.4 50 498-549 347-397 (754)
259 2ff4_A Probable regulatory pro 85.0 4.3 0.00015 39.4 9.9 71 493-564 176-250 (388)
260 3o48_A Mitochondria fission 1 84.5 3.6 0.00012 32.2 7.1 44 610-653 62-106 (134)
261 2p58_C Putative type III secre 84.2 3.7 0.00013 29.9 6.4 87 18-110 22-108 (116)
262 1zbp_A Hypothetical protein VP 81.4 3.7 0.00013 36.7 6.9 50 534-585 8-57 (273)
263 1zbp_A Hypothetical protein VP 81.1 3.8 0.00013 36.6 6.9 56 569-624 7-64 (273)
264 4fhn_B Nucleoporin NUP120; pro 80.1 49 0.0017 37.5 17.4 143 493-652 817-965 (1139)
265 2y69_E Cytochrome C oxidase su 80.0 5.7 0.00019 30.9 6.5 62 504-567 69-130 (152)
266 2y69_E Cytochrome C oxidase su 80.0 16 0.00055 28.5 8.9 50 584-633 81-130 (152)
267 2uwj_G Type III export protein 76.7 19 0.00066 26.2 10.0 86 437-527 21-106 (115)
268 2p58_C Putative type III secre 75.7 21 0.00071 26.1 9.9 86 437-527 22-107 (116)
269 1wdy_A 2-5A-dependent ribonucl 75.5 24 0.00083 31.8 11.4 43 338-380 196-240 (285)
270 4b4t_R RPN7, 26S proteasome re 71.6 11 0.00039 37.0 8.3 97 525-622 133-239 (429)
271 1n11_A Ankyrin; clathrin, BAND 70.6 77 0.0026 30.9 14.4 110 10-129 18-134 (437)
272 1qsa_A Protein (soluble lytic 70.2 1E+02 0.0036 31.8 32.5 239 401-656 228-481 (618)
273 3esl_A Checkpoint serine/threo 69.7 39 0.0013 28.6 9.8 28 592-619 116-143 (202)
274 1wdy_A 2-5A-dependent ribonucl 68.5 66 0.0022 28.8 12.9 205 8-226 7-241 (285)
275 1n11_A Ankyrin; clathrin, BAND 68.0 92 0.0032 30.3 14.8 174 43-225 16-200 (437)
276 3txn_A 26S proteasome regulato 64.5 1E+02 0.0035 29.6 19.5 126 357-482 20-164 (394)
277 4b4t_R RPN7, 26S proteasome re 63.3 32 0.0011 33.8 9.6 94 459-552 133-237 (429)
278 3jxi_A Vanilloid receptor-rela 59.3 63 0.0022 28.6 10.4 55 10-64 9-72 (260)
279 3esl_A Checkpoint serine/threo 59.1 62 0.0021 27.4 9.0 73 67-140 75-150 (202)
280 3ltj_A Alpharep-4; protein eng 58.3 83 0.0028 26.4 19.5 42 361-402 33-74 (201)
281 4g8k_A 2-5A-dependent ribonucl 58.0 1.2E+02 0.004 28.1 14.4 80 339-423 217-302 (337)
282 3ltm_A Alpha-REP4; protein eng 57.9 87 0.003 26.6 19.3 47 456-502 125-171 (211)
283 1k1a_A B-cell lymphoma 3-encod 57.5 94 0.0032 26.8 11.5 42 186-227 129-173 (241)
284 1k1a_A B-cell lymphoma 3-encod 57.5 94 0.0032 26.8 12.3 182 9-226 12-205 (241)
285 2nsz_A Programmed cell death p 56.5 55 0.0019 25.4 8.0 66 360-425 11-81 (129)
286 4a1g_A Mitotic checkpoint seri 56.1 77 0.0026 25.4 9.0 45 610-654 84-130 (152)
287 3ljn_A Hypothetical protein; a 55.5 76 0.0026 30.0 10.8 87 9-99 23-111 (364)
288 1oyz_A Hypothetical protein YI 54.7 1.2E+02 0.0041 27.2 21.1 59 557-619 204-262 (280)
289 3eu9_A Huntingtin-interacting 53.6 1.1E+02 0.0037 26.3 13.4 113 13-139 16-136 (240)
290 3mv2_A Coatomer subunit alpha; 51.9 1.2E+02 0.004 28.0 10.3 126 498-655 124-257 (325)
291 4gq2_M Nucleoporin NUP120; bet 49.9 1.1E+02 0.0039 33.6 12.0 47 593-639 899-950 (950)
292 2wvi_A Mitotic checkpoint seri 49.9 1E+02 0.0035 25.1 8.7 32 590-621 95-126 (164)
293 2ion_A PDCD4, programmed cell 47.7 51 0.0018 26.5 6.6 66 360-425 13-83 (152)
294 3ljn_A Hypothetical protein; a 45.8 97 0.0033 29.2 9.8 92 42-139 21-115 (364)
295 3b7b_A Euchromatic histone-lys 45.7 1.4E+02 0.005 25.5 11.0 173 10-226 15-199 (237)
296 3bqo_A Telomeric repeat-bindin 45.5 1.1E+02 0.0039 25.6 8.2 37 597-633 123-159 (211)
297 3kea_A K1L; tropism, ANK repea 44.2 85 0.0029 28.4 8.7 145 43-226 33-183 (285)
298 3kea_A K1L; tropism, ANK repea 43.0 1.9E+02 0.0064 26.0 12.9 113 187-320 109-224 (285)
299 3ltm_A Alpha-REP4; protein eng 41.3 1.6E+02 0.0055 24.8 20.7 153 456-619 32-184 (211)
300 2b7e_A PRE-mRNA processing pro 40.6 32 0.0011 22.3 3.4 35 19-53 2-37 (59)
301 2qx5_A Nucleoporin NIC96; mRNA 40.0 3.4E+02 0.012 28.2 20.6 42 252-296 157-198 (661)
302 3eiq_C Programmed cell death p 39.8 1.1E+02 0.0038 28.9 8.5 244 73-373 58-305 (358)
303 2d2s_A Exocyst complex compone 39.7 1.1E+02 0.0038 26.8 8.1 31 622-652 88-118 (235)
304 3b7b_A Euchromatic histone-lys 37.6 1.8E+02 0.006 24.9 9.5 76 43-124 13-93 (237)
305 2wvi_A Mitotic checkpoint seri 37.5 1.7E+02 0.0057 23.9 9.1 82 56-140 48-131 (164)
306 2r9g_A AAA ATPase, central reg 36.8 1.9E+02 0.0066 24.4 9.4 62 391-453 15-84 (204)
307 4g8k_A 2-5A-dependent ribonucl 36.3 2.6E+02 0.0088 25.7 15.9 53 8-64 27-82 (337)
308 1s6c_A KV4 potassium channel-i 35.8 1.8E+02 0.0061 23.7 9.0 129 19-153 20-169 (183)
309 3jxi_A Vanilloid receptor-rela 35.7 1.9E+02 0.0064 25.3 9.5 54 78-132 11-73 (260)
310 1ug3_A EIF4GI, eukaryotic prot 35.5 1.1E+02 0.0037 28.7 7.9 61 41-101 14-78 (339)
311 2zu6_B Programmed cell death p 35.4 1.4E+02 0.0046 27.6 8.2 26 42-67 7-32 (307)
312 1ug3_A EIF4GI, eukaryotic prot 34.7 2.1E+02 0.0071 26.8 9.7 63 361-423 16-82 (339)
313 2etb_A Transient receptor pote 34.4 92 0.0031 27.4 7.1 56 9-64 5-69 (256)
314 3ltj_A Alpharep-4; protein eng 34.2 2E+02 0.0069 23.9 21.6 153 455-618 26-178 (201)
315 4b4t_S RPN3, 26S proteasome re 34.1 3.5E+02 0.012 27.0 11.3 59 458-516 232-298 (523)
316 2p1h_A APAF-1, apoptotic prote 33.4 83 0.0028 22.6 5.3 63 22-88 24-86 (94)
317 3ygs_P Procaspase 9; apoptosis 33.4 48 0.0017 24.2 4.0 64 22-89 23-88 (97)
318 2b7e_A PRE-mRNA processing pro 32.8 59 0.002 21.1 3.7 32 85-117 2-34 (59)
319 2nsz_A Programmed cell death p 32.3 1E+02 0.0034 24.0 5.9 25 249-273 9-33 (129)
320 4aez_C MAD3, mitotic spindle c 32.3 2.1E+02 0.0072 24.7 8.3 78 575-655 100-180 (223)
321 3d9h_A CDNA FLJ77766, highly s 31.5 2.8E+02 0.0097 24.7 10.6 41 186-226 170-212 (285)
322 4b4t_S RPN3, 26S proteasome re 30.4 1.6E+02 0.0056 29.3 8.3 61 525-585 233-296 (523)
323 3bge_A Predicted ATPase; struc 30.3 2.5E+02 0.0084 23.7 8.1 46 392-437 9-57 (201)
324 2f8y_A Notch homolog 1, transl 29.9 1.2E+02 0.0043 25.7 7.1 197 23-225 4-212 (223)
325 3hra_A Ankyrin repeat family p 29.8 1.5E+02 0.0051 24.6 7.4 14 211-224 79-92 (201)
326 2d2s_A Exocyst complex compone 29.4 2.9E+02 0.0098 24.1 9.3 26 252-277 23-48 (235)
327 2ion_A PDCD4, programmed cell 29.4 1.1E+02 0.0039 24.5 5.9 25 249-273 11-35 (152)
328 3ctd_A Putative ATPase, AAA fa 29.2 2.7E+02 0.0091 23.7 8.9 65 389-453 34-106 (213)
329 2etb_A Transient receptor pote 27.8 3E+02 0.01 23.9 11.0 56 76-133 6-71 (256)
330 1ya0_A SMG-7 transcript varian 27.3 1.7E+02 0.0057 29.2 7.9 43 605-647 166-208 (497)
331 3kae_A CDC27, possible protein 27.3 2.6E+02 0.0089 23.0 10.9 90 564-656 38-145 (242)
332 2xai_A ASB-9, ankyrin repeat a 27.0 3.2E+02 0.011 23.9 12.7 173 10-226 7-188 (261)
333 3mwm_A ZUR, putative metal upt 24.9 74 0.0025 25.1 4.0 47 8-54 18-64 (139)
334 2fe3_A Peroxide operon regulat 23.7 2.1E+02 0.007 22.6 6.5 48 288-335 25-72 (145)
335 2dzn_A Probable 26S proteasome 23.5 3E+02 0.01 23.2 8.4 174 10-224 6-194 (228)
336 2keb_A DNA polymerase subunit 23.5 2.2E+02 0.0074 20.7 6.5 61 302-362 27-88 (101)
337 2o03_A Probable zinc uptake re 23.5 78 0.0027 24.6 3.9 47 8-54 15-61 (131)
338 1bd8_A P19INK4D CDK4/6 inhibit 23.4 98 0.0034 24.4 4.8 112 9-130 5-123 (156)
339 1wgl_A TOLL-interacting protei 23.3 1.1E+02 0.0037 19.8 3.8 24 116-139 34-57 (59)
340 4ets_A Ferric uptake regulatio 23.0 1.5E+02 0.0052 24.0 5.7 69 86-156 14-85 (162)
341 2fe3_A Peroxide operon regulat 22.1 2E+02 0.0069 22.7 6.2 36 119-154 35-70 (145)
342 3hra_A Ankyrin repeat family p 21.9 3.3E+02 0.011 22.3 8.5 21 44-64 42-62 (201)
343 4ets_A Ferric uptake regulatio 21.9 1.9E+02 0.0066 23.4 6.1 49 287-335 35-85 (162)
344 2o03_A Probable zinc uptake re 21.5 1.6E+02 0.0054 22.8 5.4 47 289-335 15-61 (131)
345 1mzb_A Ferric uptake regulatio 21.5 1.9E+02 0.0066 22.4 5.9 60 95-156 9-69 (136)
346 3mwm_A ZUR, putative metal upt 21.4 1.4E+02 0.0049 23.4 5.1 48 288-335 17-64 (139)
347 3bqo_A Telomeric repeat-bindin 21.4 2E+02 0.0068 24.2 5.8 46 54-99 94-147 (211)
348 3rjo_A Endoplasmic reticulum a 21.0 5.6E+02 0.019 24.6 12.6 31 105-135 267-297 (419)
349 2fu4_A Ferric uptake regulatio 20.7 2.1E+02 0.0072 19.6 7.4 60 412-472 7-67 (83)
350 4hbd_A KN motif and ankyrin re 20.4 2.8E+02 0.0097 24.6 7.7 92 43-139 113-210 (276)
351 1oyz_A Hypothetical protein YI 20.3 4.5E+02 0.015 23.2 22.7 48 36-83 35-82 (280)
352 2fo1_E LIN-12 protein; beta-ba 20.2 5.4E+02 0.018 24.1 10.5 83 10-93 129-220 (373)
353 3ygs_P Procaspase 9; apoptosis 20.1 1.1E+02 0.0039 22.1 3.9 38 370-407 51-88 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=348.49 Aligned_cols=506 Identities=8% Similarity=-0.052 Sum_probs=371.6
Q ss_pred HHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHH
Q 005943 47 MYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRL 126 (668)
Q Consensus 47 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 126 (668)
.+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|++|.... |+..++..++.+|.+.|++++|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHH
Confidence 35567778888888888888899999999999999999999999999998755 788899999999999999999999
Q ss_pred HHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHH
Q 005943 127 IHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTS 206 (668)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (668)
+++.+... .++..+++.
T Consensus 139 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~ 155 (597)
T 2xpi_A 139 LLTKEDLY---------------------------------------------------------------NRSSACRYL 155 (597)
T ss_dssp HHHHTCGG---------------------------------------------------------------GTCHHHHHH
T ss_pred HHHHHhcc---------------------------------------------------------------ccchhHHHH
Confidence 99876421 257778889
Q ss_pred HHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeee
Q 005943 207 LIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVAL 286 (668)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 286 (668)
++.+|.+.|++++|.++|+++...+... ..+.+. .....+..++..+
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------~~~~~~-------------~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDE--------------------KNANKL-------------LMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC-------------------------------------------CCCSSCCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccc--------------------cccccc-------------cccccccchhHHH
Confidence 9999999999999999999644322100 000000 0011123335566
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccccchHHHHHH-HHHHHHhCCCCccchHHHHHH
Q 005943 287 WNSMISGYVLNEQNEEAITLLSHIHSSGMCID-SYTFTSALKACINLLNFNSRFALQV-HGLIVTSGYELDYIVGSNLID 364 (668)
Q Consensus 287 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~ 364 (668)
|+.++.+|.+.|++++|+.+|++|.+.+ |+ ...+..+...+...+.........+ +..+...+..+...+|+.++.
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 7777777777777777777777776643 32 3333333333322222110111111 333333344445556666777
Q ss_pred HHHhcCChHHHHHHHccCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH
Q 005943 365 LYARLGNVKSALELFHRLPK--KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK 442 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 442 (668)
.|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHH
Confidence 88888889999999988887 6888899999999999999999999999887653 36677888888888999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005943 443 QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL 519 (668)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 519 (668)
.+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998888654 56778888889999999999999999987753 457789999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC--
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-- 590 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-- 590 (668)
+.+..+|..++.+|.+.|++++|.++|+++... .+.+..+|..++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 446778888999999999999999999998743 2336788999999999999999999998887 34676
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
..+|..++.+|.+.|++++|.+.++++.+..|+++.+|..++.+|.+.|++++|.++++++.+..+.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 77889999999999999999999999999999999999999999999999999999999988876633
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-38 Score=335.44 Aligned_cols=181 Identities=10% Similarity=0.037 Sum_probs=143.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566666666666666666666665432 356677788888888888888888888888753 4467788888888
Q ss_pred hhcCCCHHHHHHHHHhccccc---CCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEY---GLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHN 605 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~ 605 (668)
+.+.|++++|.++|+++.... +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..+..+|.+.|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 888888888888888886431 45676 678999999999999999999999887 22 347889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
++++|.+.++++.+.+|+++..+..++.+|.+
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999987754
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-27 Score=244.19 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---------chHhHHHHHHHHHHhCCCCchh
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA---------SLRRGKQVHAFCVKRGFEKEDI 458 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 458 (668)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4578889999999999999999999999999999999999999997654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMP----ERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999886 38999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA 572 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (668)
+.|++++|.+++++|... +..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999866 9999999999999888753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-27 Score=243.94 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCChhHHHHhhhhh
Q 005943 87 WAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSLTRKLFDQYSN 166 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~~~~~~~~~ 166 (668)
.+..+.+.+.+.+........++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+.....
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4556667777777552223468889999999999999999999999999999999999999999887754310
Q ss_pred hhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCc
Q 005943 167 WAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECS 246 (668)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (668)
.-...++.+..+++.|.+.|+.||..||++||.+|++.|++++|.++|++|...+
T Consensus 81 ----------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--------------- 135 (501)
T 4g26_A 81 ----------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG--------------- 135 (501)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------
T ss_pred ----------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------
Confidence 0111223356778888889999999999999999999999999998888887655
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 136 ---------------------------------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 136 ---------------------------------IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ---------------------------------CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHh
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYAR 368 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (668)
.+|++.|+. +.|.++++.|.+.|..|+..+|+.++..+..
T Consensus 183 ~~~~~~g~~--d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 183 KVSMDTKNA--DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhhCCCH--HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666 6666666666666666666666666665554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.5e-25 Score=223.99 Aligned_cols=374 Identities=13% Similarity=0.047 Sum_probs=271.2
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
...+.+.|++++|.+.++.+...++. +...+..+...+...|++++|...++..... .+.+..+|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---~p~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAY 70 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHH
Confidence 34556677777777777666532221 3455566666677777777777777666442 23345567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
..+...+.+.|++++|+..|+++... .|+ +...+..+..++.
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~------------------------------------~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRL--KPD------------------------------------FIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc--Ccc------------------------------------hHHHHHHHHHHHH
Confidence 77777777777777777777776553 222 2223444555555
Q ss_pred hcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 368 RLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554432 2 33445556666666777777777777766543 23455666677777777777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP 521 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 521 (668)
++++.+.. +.+...+..+...+...|++++|...|++... | +..++..+..++...|++++|+..|+++.+. .|
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p 268 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP 268 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 77776654 44566778888888889999999888887653 4 5678888999999999999999999999885 44
Q ss_pred -CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 -NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+..+|..+..++.+.|++++|...++++.+. .+.+..++..+..++.+.|++++|.+.++++ ...| +..++..+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4668888999999999999999999999853 3456888999999999999999999999887 3334 577888999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+.+.|++++|...++++.+..|+++.++..++.++...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999998887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.3e-24 Score=214.30 Aligned_cols=354 Identities=13% Similarity=0.081 Sum_probs=292.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhhhcCCCC-eeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005943 254 VDMYSNCNVLCEARKLFDQYSSWAASAYGN-VALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINL 332 (668)
Q Consensus 254 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (668)
...+.+.|++++|.+.+..+.. ..|+ ...+..+...+...|++++|...++......
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------ 63 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------ 63 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------
Confidence 3456667777777777777654 3343 3445555566667777777777766654421
Q ss_pred cccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCC--C-ChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 333 LNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPK--K-DVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
+.+...+..+...+.+.|++++|...|+++.+ | +..+|..+..++.+.|++++|...
T Consensus 64 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 64 --------------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred --------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33455566677788888888888888887653 3 556799999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R- 486 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 486 (668)
|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+ |
T Consensus 124 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 124 YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99998764 2234566777788889999999999999998875 45678899999999999999999999998864 4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYC 564 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 564 (668)
+...|..+...+...|++++|+..+++..+. .| +..++..+..++...|++++|...++++.. ..| +..++..
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 276 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCN 276 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHH
Confidence 4668889999999999999999999999885 45 467899999999999999999999999984 345 5788999
Q ss_pred HHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
+..++.+.|++++|.+.++++ ..+++..++..+...+.+.|++++|...++++.+..|++..++..++.+|.+.|+++
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999988 235578899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC
Q 005943 643 SLSKVRKAGKKLGE 656 (668)
Q Consensus 643 ~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..+
T Consensus 357 ~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 357 EALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999987655
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.6e-22 Score=207.82 Aligned_cols=397 Identities=8% Similarity=-0.044 Sum_probs=319.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005943 247 CFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSAL 326 (668)
Q Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 326 (668)
...+......+.+.|++++|...|+++.. ..|+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE----LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 45677888999999999999999999977 45788899999999999999999999999998864 34567888999
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHH---------------------------
Q 005943 327 KACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELF--------------------------- 379 (668)
Q Consensus 327 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------------------------- 379 (668)
.++...|++ +.|...++.+.+.+- ++......++..+.+......+.+.+
T Consensus 81 ~~~~~~g~~--~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 81 SANEGLGKF--ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHhhH--HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 999999999 999999999888763 34444444444443322222222211
Q ss_pred -----------ccCCC---------C-ChhhHHHHHHHHHh---cCCcHHHHHHHHHHHH-----cCC--------CCcH
Q 005943 380 -----------HRLPK---------K-DVVAWSGLIMGCTK---HGLNSLAYLLFRDMIN-----SNQ--------DVNQ 422 (668)
Q Consensus 380 -----------~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~ 422 (668)
..... + +...+......+.. .|++++|...|+++.. ... +.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 11110 1 13334444444444 8999999999999987 311 2234
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
..+..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence 57777888899999999999999999887633 88888999999999999999999998764 35678899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
..|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+..+|.+.|++++|.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999853 334568888999999999999999999999853 2335788999999999999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 580 QLIAEM----PFKPD----KTIWASMLKACET---HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 580 ~~~~~~----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
..++++ +..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|...|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999887 22222 3488889999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 005943 649 KAGKKLGE 656 (668)
Q Consensus 649 ~~~~~~~~ 656 (668)
+++.+..+
T Consensus 473 ~~a~~~~~ 480 (514)
T 2gw1_A 473 EESADLAR 480 (514)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcc
Confidence 99988766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.1e-22 Score=211.05 Aligned_cols=413 Identities=8% Similarity=-0.077 Sum_probs=281.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA 278 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 278 (668)
|+...|..+..++.+.|++++|.+.|+.+.+.++. +..++..+...+...|++++|...|+.+...
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 102 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD------------YSKVLLRRASANEGLGKFADAMFDLSVLSLN-- 102 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 45556666667777777777777777776633322 4566777777777778888887777777552
Q ss_pred cCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCC------
Q 005943 279 SAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGY------ 352 (668)
Q Consensus 279 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~------ 352 (668)
.+++......++..+........+.+.+..+...+..|+...+..-.......... .....+...+.....
T Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 103 -GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL--PSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp -SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC--CCHHHHHHHHTTSCCCCCCSS
T ss_pred -CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC--chhHHHHHHHhhcCHHHHHHH
Confidence 12233334444444443333333333333222222112211111111000111111 001111111111111
Q ss_pred ---CCccchHHHHHHHHHh---cCChHHHHHHHccCCC----------------C-ChhhHHHHHHHHHhcCCcHHHHHH
Q 005943 353 ---ELDYIVGSNLIDLYAR---LGNVKSALELFHRLPK----------------K-DVVAWSGLIMGCTKHGLNSLAYLL 409 (668)
Q Consensus 353 ---~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~~~~~~~a~~~ 409 (668)
+.+...+......+.. .|++++|...|+++.+ + +..++..+...+...|++++|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1112333333344443 7889999988887644 1 345678888999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---C
Q 005943 410 FRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---R 486 (668)
Q Consensus 410 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 486 (668)
|+++...... ...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++..+ .
T Consensus 260 ~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 260 IKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred HHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 9999887644 8888889999999999999999999988765 45677888999999999999999999998753 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 562 (668)
+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.....-.++ ...+
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 56788899999999999999999999998852 335668888999999999999999999998753222222 3389
Q ss_pred HHHHHHhhh---cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 563 YCMVDLLGQ---AGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 563 ~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..+..++.. .|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.++..+..+.
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999 99999999999987 2 2346778889999999999999999999999999999888777654
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.4e-21 Score=200.00 Aligned_cols=430 Identities=10% Similarity=0.005 Sum_probs=315.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
....+..+...+.+.|++++|++.|+++...++. ++.++..+...|...|++++|.+.|+++.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 88 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN------------EPVFYSNISACYISTGDLEKVIEFTTKALEI--- 88 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 3566788889999999999999999998854432 6788999999999999999999999998763
Q ss_pred CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC--CCCccc
Q 005943 280 AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSG--YELDYI 357 (668)
Q Consensus 280 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 357 (668)
.+.+..++..+...+...|++++|+..|+.+ .. .|+... ..+..+...+.. ..+...++.+.... ..+...
T Consensus 89 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~--~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 89 KPDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLN--KQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHH--HHHHHHHHHHCC-------CCC
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHH--HHHHHHHHHHHHhCcccccccc
Confidence 2335677888999999999999999999743 22 232221 122333334444 66666666664431 111222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChh---hHHHHHHHHHh--------cCCcHHHHHHHHHHHHcCCCCc-----
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVV---AWSGLIMGCTK--------HGLNSLAYLLFRDMINSNQDVN----- 421 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~----- 421 (668)
.....+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++.+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 2234455566777888887777776655433 33333333222 2478889999998886543221
Q ss_pred -HHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 005943 422 -QFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVG 497 (668)
Q Consensus 422 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 497 (668)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+...|..+...
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 2245566667778889999999999988874 4577888889999999999999999987763 357788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++... .+.+...+..+..++...|++++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998853 234567888889999999999999999998853 23357788899999999999999
Q ss_pred HHHHHHhCC----CC----CCHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 578 AEQLIAEMP----FK----PDKTIWASMLKACETH----------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 578 A~~~~~~~~----~~----p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
|.+.++++. .. .....+......+.+. |++++|...++++.+..|+++.++..++.+|...|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999998761 11 1222344455666777 99999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCC
Q 005943 640 MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 640 ~~~~a~~~~~~~~~~~~ 656 (668)
++++|.+.+++..+..+
T Consensus 477 ~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 477 KIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999887765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.5e-21 Score=196.54 Aligned_cols=335 Identities=13% Similarity=0.053 Sum_probs=216.0
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
+...+..++..+.+.|++++|...|+.+... .+.+..+|..+..++...|++++|+..|+++.+.+ |+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD------- 92 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-------
Confidence 4566777777777777777777777777542 22355667777777777777777777777766532 11
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCC---h---hhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKD---V---VAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~ 399 (668)
+...+..+...|.+.|++++|.+.|+++.+.+ . ..+..+...+..
T Consensus 93 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 93 -----------------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 22233334444555555555555555443321 1 233333222100
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLAL 479 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 479 (668)
.+ +..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...
T Consensus 144 ~~-----------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 144 QR-----------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp HH-----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred HH-----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 00 0111122333444444444444444432 34556666677777777777777777
Q ss_pred hccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH------------HHHhhcCCCHHHHH
Q 005943 480 FKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGV------------LSACRHAGLVEEAW 543 (668)
Q Consensus 480 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l------------l~~~~~~g~~~~a~ 543 (668)
|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+. ..+..+ ...+...|++++|.
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776653 35667777788888888888888888887764 3433 334333 67788889999999
Q ss_pred HHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
..|+++... .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+..+|...|++++|...+++
T Consensus 278 ~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 278 SKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 988888743 454 347788888889999999999988887 3334 678888888889999999999999999
Q ss_pred HHhcCCCCchhHHHHHH------------HHHhcC-----ChhhHHHHHHH
Q 005943 617 LLATSPEDPSKYVMLSN------------VYATLG-----MWDSLSKVRKA 650 (668)
Q Consensus 617 ~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~ 650 (668)
+++..|+++.++..++. .|...| +.+++.+.+++
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999998888888884 355555 55666777765
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.8e-20 Score=196.07 Aligned_cols=447 Identities=12% Similarity=0.033 Sum_probs=306.7
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchHhhHHHh
Q 005943 69 IVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVLMNTLLD 148 (668)
Q Consensus 69 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 148 (668)
...|..+...+.+.|++++|+..|+++.+.. + .+...|..+..++...|++++|.+.++.+.+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------ 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-P-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP------------ 90 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------------
Confidence 3467778888888888888988888888876 2 3566788888888888888888888888876532
Q ss_pred hhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccC
Q 005943 149 MYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMP 228 (668)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 228 (668)
.+...+..+...+...|++++|...|+.+.
T Consensus 91 --------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 120 (537)
T 3fp2_A 91 --------------------------------------------------DHSKALLRRASANESLGNFTDAMFDLSVLS 120 (537)
T ss_dssp --------------------------------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred --------------------------------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 234456666677777788888888776443
Q ss_pred -CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH
Q 005943 229 -ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL 307 (668)
Q Consensus 229 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 307 (668)
.++.. ...+..+...+....|...++.+.....+..+........+..+....+.+.+...+
T Consensus 121 ~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 121 LNGDFD-----------------GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred cCCCCC-----------------hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 22111 111223334444566666666664422112222233344555555555555554443
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCC--
Q 005943 308 SHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKK-- 385 (668)
Q Consensus 308 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 385 (668)
..... ..+....+...+........ -......|++++|..+++++.+.
T Consensus 184 ~~~~~--~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 184 NTSSN--YDTAYALLSDALQRLYSATD----------------------------EGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp CCCCS--SCSSHHHHHHHHHHHHTCSH----------------------------HHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred hhccc--cccHHHHHHHHHHHHHHhhh----------------------------hhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 33221 11221112111111111000 00111235677777777776543
Q ss_pred -C-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCch
Q 005943 386 -D-------VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKED 457 (668)
Q Consensus 386 -~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 457 (668)
+ ..++..+...+...|++++|...|++..... |+...+..+...+...|+++.|...++.+.+.. +.+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 2 1246666778888999999999999998864 457888889999999999999999999998875 4567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
.++..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 8899999999999999999999998763 3 56788999999999999999999999999863 334568888999999
Q ss_pred cCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhc----------CChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQA----------GCFDDAEQLIAEM-P-FKPDKTIWASML 598 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~ 598 (668)
..|++++|...++++.....-.+ ....+..+..++... |++++|...++++ . .+.+...+..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999875311111 123345556778888 9999999999988 2 334677899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
..+.+.|++++|.+.++++.+..|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999998766543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=9.9e-20 Score=187.14 Aligned_cols=296 Identities=12% Similarity=0.073 Sum_probs=221.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 005943 356 YIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVC 432 (668)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 432 (668)
...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 33444455555556666666665555432 244555556666666666666666666665543 22345555556666
Q ss_pred ccccchHhHHHHHHHHHHhCCCCch---hHHHH------------HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKED---ITLTS------------LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGI 494 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 494 (668)
...|++++|...++.+.+.. +.+. ..+.. +...+.+.|++++|...|+++.+ .+...+..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 66666666666666555432 2222 33333 34558899999999999998763 467789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH--------
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM-------- 565 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l-------- 565 (668)
..+|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.. ..|+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998853 45678899999999999999999999999984 3554 4445444
Q ss_pred ----HHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 566 ----VDLLGQAGCFDDAEQLIAEM-PFKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 566 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..+.+.|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|...++++.+..|+++.++..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 33454 447888888999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...|++++|...++++.+..+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999887653
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.3e-16 Score=170.11 Aligned_cols=412 Identities=10% Similarity=0.098 Sum_probs=307.4
Q ss_pred CCchhhhhhhhc----chhhHHHHHHhCCC--CChhhHHHHHHHHHhCCChHHHHHHhhccC-CCCcchHHHHhhhcccC
Q 005943 173 GNVALWNSMLSG----GKQVHAFCVKRGFE--KEDVTLTSLIDMYLKCGEIDDGLALFNFMP-ERDVVSWTGIIVGCFEC 245 (668)
Q Consensus 173 ~~~~~~~~~~~~----~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 245 (668)
.|...|..++.. .++++.+.+...+. .++.-....+++|...|.+.+|+++++++. .+...+ .
T Consensus 951 ~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs----------~ 1020 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS----------E 1020 (1630)
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccc----------c
Confidence 577888888865 34555555544432 344455778899999999999999999988 322111 1
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
+...-+.++....+. +..+..++..... ......+...+...|.+++|..+|++.. -.....+.+
T Consensus 1021 n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL 1085 (1630)
T 1xi4_A 1021 HRNLQNLLILTAIKA-DRTRVMEYINRLD---------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL 1085 (1630)
T ss_pred cHHHHHHHHHHHHHh-ChhhHHHHHHHhh---------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH
Confidence 334455566666666 4556666655552 1124557788899999999999999852 112222333
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHH
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSL 405 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 405 (668)
+. ..+++ +.|.++.+.. -++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+.|++++
T Consensus 1086 ie---~i~nl--drAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1086 IE---HIGNL--DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HH---HHhhH--HHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHH
Confidence 32 45556 7777776644 35778889999999999999999999765 677888899999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 005943 406 AYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE 485 (668)
Q Consensus 406 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 485 (668)
|.+.|...++.. +++...+.+..+|++.++++....+.+ .++...+..+.+.|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999877654 333333458889999988886554432 345566777999999999999999999985
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHH
Q 005943 486 RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565 (668)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 565 (668)
..|..+..+|.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEEL 1286 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHH
Confidence 48999999999999999999999886 35688999999999999999998875543 3456778899
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--hCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACET--HNNTKLVSIIAEQLLATSP-----EDPSKYVMLSNVYA 636 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 636 (668)
+..|.+.|.+++|+.+++.. +..| ....|..+...+.+ -++..++.+.|..-....| .+...|..++.+|.
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 4444 34456556555554 5567777777777666655 67788999999999
Q ss_pred hcCChhhHHHHH
Q 005943 637 TLGMWDSLSKVR 648 (668)
Q Consensus 637 ~~g~~~~a~~~~ 648 (668)
+-|+++.|...+
T Consensus 1367 ~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1367 KYEEYDNAIITM 1378 (1630)
T ss_pred hcccHHHHHHHH
Confidence 999999999543
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=2.8e-15 Score=161.88 Aligned_cols=250 Identities=12% Similarity=0.073 Sum_probs=184.0
Q ss_pred hcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHH
Q 005943 368 RLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAF 447 (668)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 447 (668)
..+++++|.++.+++. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+..
T Consensus 1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666552 4567778888888888888888888553 4667777788888888888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFL 527 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 527 (668)
.++.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|.
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 76654 33333445788888888887655443 3456666777888888888888888888774 3678
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCH
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNT 607 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 607 (668)
.+..++.+.|++++|.+.+++.. +..+|..+..++...|++..|......+ ..+...+..++..|.+.|.+
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887763 3477888888888888888888776653 34555667888888899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc--CChhhHHHHH
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATL--GMWDSLSKVR 648 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 648 (668)
++|+.+++..+.++|.....+..++.+|.+. ++..++.+++
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999988888888887777777654 3444444444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=3.1e-17 Score=162.82 Aligned_cols=323 Identities=12% Similarity=0.019 Sum_probs=198.4
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++..+..+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|+..|+++.+.. +-+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~---- 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA---- 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH----
Confidence 4556677777888888888888888887552 22345667777777778888888888877776532 112222
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCCh------hhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDV------VAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~ 399 (668)
+..+...+...|++++|...|+++.+.++ ..+..+...+.
T Consensus 74 ---------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 119 (359)
T 3ieg_A 74 ---------------------------------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE- 119 (359)
T ss_dssp ---------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-
T ss_pred ---------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-
Confidence 23344444444555555554444432211 11111100000
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLAL 479 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 479 (668)
...+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 120 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 ----------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 0001111233344444444444444444433 34556666677777777777777777
Q ss_pred hccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH------------HHHHHhhcCCCHHHHH
Q 005943 480 FKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFL------------GVLSACRHAGLVEEAW 543 (668)
Q Consensus 480 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~ 543 (668)
+++..+ .+...+..+...+...|++++|...+++..+. .|+ ...+. .+...+.+.|++++|.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 254 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776543 35567777777788888888888888877764 333 22222 2255677788888888
Q ss_pred HHHHhcccccCCCCC-h----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 544 TIFTSMKPEYGLEPH-L----EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
..++++... .|+ . ..+..+..++.+.|++++|.+.+++. ...| +...+..+...+...|++++|...+++
T Consensus 255 ~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 255 SKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887743 343 2 23455677888888888888888777 2233 667777788888888888888888888
Q ss_pred HHhcCCCCchhHHHHHHHHHhc
Q 005943 617 LLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 617 ~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+.+.+|+++.++..+..++...
T Consensus 332 a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 332 AQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCChHHHHHHHHHHHHH
Confidence 8888888887777777665543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.6e-17 Score=164.90 Aligned_cols=290 Identities=12% Similarity=0.062 Sum_probs=210.3
Q ss_pred HHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc
Q 005943 361 NLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS 437 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 437 (668)
.+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 344445555555555555554432 234455555555555555555555555555442 2233455555555555556
Q ss_pred hHhHHHHHHHHHHhCCC---CchhHHHH------------HHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFE---KEDITLTS------------LIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~---~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
+++|...++.+.+.. + .+...+.. +...+...|++++|...++++.+ .+...+..+...+.
T Consensus 87 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 666655555554432 1 12222322 36788899999999999998763 46778899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHH------------HHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYY------------CMV 566 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~ 566 (668)
..|++++|+..++++.+.. +.+..++..+...+...|++++|...+++.... .|+ ...+. .+.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999863 446778999999999999999999999999843 444 33332 336
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 567 DLLGQAGCFDDAEQLIAEM-PFKPD-K----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|+++.++..++.+|...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 7799999999999999987 33343 2 2345567789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCC
Q 005943 641 WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 641 ~~~a~~~~~~~~~~~~ 656 (668)
+++|.+.++++.+..+
T Consensus 322 ~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998766
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.8e-17 Score=160.12 Aligned_cols=287 Identities=9% Similarity=-0.001 Sum_probs=215.2
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005943 353 ELDYIVGSNLIDLYARLGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVL 429 (668)
Q Consensus 353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 429 (668)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566666777778888888888888877653 244566667777888888888888888887753 33455666777
Q ss_pred HHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChH
Q 005943 430 KVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 430 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 505 (668)
..+...| ++++|...++...+.. +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7888888888777654 44566778888888888888888888887653 3 3556777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC-------CCCChhHHHHHHHHhhhcCChHHH
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-------LEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+|+..+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888752 34456788888888888888888888887764311 133456888888888888999988
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCChh
Q 005943 579 EQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY-ATLGMWD 642 (668)
Q Consensus 579 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 642 (668)
.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8888877 2 2335667888888888888999999999988888888888888888887 4556644
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.6e-17 Score=157.20 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=228.8
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHH
Q 005943 385 KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLI 464 (668)
Q Consensus 385 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 464 (668)
.+...+..+...+...|++++|..+|+++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677888889999999999999999998764 3344556667778889999999999999998875 55678888999
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 005943 465 DMYLKCG-EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE 540 (668)
Q Consensus 465 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 540 (668)
..+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999863 334567777889999999999
Q ss_pred HHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhhCCHH
Q 005943 541 EAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-F----------KPDKTIWASMLKACETHNNTK 608 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 608 (668)
+|...++++.. ..| +...+..+...+...|++++|...++++. . +.+...+..+...+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999984 344 57889999999999999999999998771 0 334568899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877655
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.5e-17 Score=155.46 Aligned_cols=287 Identities=12% Similarity=0.078 Sum_probs=140.3
Q ss_pred HcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccch
Q 005943 258 SNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNS 337 (668)
Q Consensus 258 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 337 (668)
-+.|++++|.++++++ ..| .+|..+..++.+.|++++|++.|.+ .+|..+|..+..++...|++
T Consensus 14 ~~~~~ld~A~~fae~~------~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~-- 77 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW-- 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCH--
Confidence 3678899999999998 434 4999999999999999999999965 36888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
+.+...+...++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9999988777663 55578889999999999999999988864 67779999999999999999999999977
Q ss_pred CCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHH
Q 005943 418 QDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVG 497 (668)
Q Consensus 418 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 497 (668)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINY 216 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHH
Confidence 47899999999999999999999987 378999999999999999999988888765 444445578899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCCHHHHHHHHHhcccccCCCC------ChhHHHHHHHHh
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH--AGLVEEAWTIFTSMKPEYGLEP------HLEHYYCMVDLL 569 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~ 569 (668)
|.+.|++++|+.+++...... +-....|.-+.-++++ .++..+.++.|.. +.+++| +...|..++-.|
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988643 2334455555555554 4455555555543 336666 478899999999
Q ss_pred hhcCChHHHHHHHHhC
Q 005943 570 GQAGCFDDAEQLIAEM 585 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~ 585 (668)
..-++++.|...+-+-
T Consensus 293 ~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HhhchHHHHHHHHHhC
Confidence 9999999998876555
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.3e-15 Score=153.30 Aligned_cols=396 Identities=9% Similarity=0.072 Sum_probs=287.5
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
+..+|..++. +.+.|++++|..+|+++.+ ..| +...|..++..+.+.|++++|..+|++.+... |+...|..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~----~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA----QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 6778888888 4789999999999999976 445 56678999999999999999999999998854 77777666
Q ss_pred HHHHH-HhccccchHHHHH----HHHHHHHh-CCCC-ccchHHHHHHHHHh---------cCChHHHHHHHccCCC-CCh
Q 005943 325 ALKAC-INLLNFNSRFALQ----VHGLIVTS-GYEL-DYIVGSNLIDLYAR---------LGNVKSALELFHRLPK-KDV 387 (668)
Q Consensus 325 ll~~~-~~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~ 387 (668)
.+... ...|+. +.+.+ +++..... |..| +...|...+....+ .|+++.|..+|++..+ |..
T Consensus 85 ~~~~~~~~~~~~--~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 85 YLSYVRETKGKL--PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHTTTS--TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHccch--hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 66433 234555 44444 66665543 6555 45667777766654 6889999999998765 221
Q ss_pred ---hhHHHHHHHH-------------HhcCCcHHHHHHHHHHH------HcC---CCCcH--------HHHHHHHHHhcc
Q 005943 388 ---VAWSGLIMGC-------------TKHGLNSLAYLLFRDMI------NSN---QDVNQ--------FIISSVLKVCSC 434 (668)
Q Consensus 388 ---~~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~~--------~~~~~ll~~~~~ 434 (668)
..|....... .+.+++..|..+++++. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 2333222211 12345667777776632 111 24431 344444432211
Q ss_pred ----ccch----HhHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHhccCCC---C-CH
Q 005943 435 ----LASL----RRGKQVHAFCVKRGFEKEDITLTSLIDMYLK-------CGEID-------DGLALFKFMPE---R-DV 488 (668)
Q Consensus 435 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~ 488 (668)
.++. +.+..++++..... +.+...|...+..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1222 36677888887763 5567788888887775 68987 89999998763 4 47
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
..|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+. .|+ ...|...
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHH
Confidence 7899999999999999999999999998 46653 47888888888999999999999999843 443 3444333
Q ss_pred HHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHhc
Q 005943 566 VDL-LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS----KYVMLSNVYATL 638 (668)
Q Consensus 566 ~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~ 638 (668)
+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.+.|..+|++++...|.++. .|..++......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 34689999999999977 3334 6788999999999999999999999999998776665 788888888999
Q ss_pred CChhhHHHHHHHHHhcCC
Q 005943 639 GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g~~~~a~~~~~~~~~~~~ 656 (668)
|+.+.+..+.+++.+.-+
T Consensus 477 G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SCHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHCc
Confidence 999999999999876544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=7.6e-17 Score=160.65 Aligned_cols=277 Identities=10% Similarity=0.006 Sum_probs=221.4
Q ss_pred HhcCChHHHHH-HHccCCC---C----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 367 ARLGNVKSALE-LFHRLPK---K----DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 367 ~~~~~~~~a~~-~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
.-.|++++|.+ .+++... . +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477888887 7775543 1 34568888889999999999999999998764 44677888888899999999
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-HhHHHH---------------HHHHHHh
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-VVSWTG---------------IIVGCGQ 500 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~~ 500 (668)
++|...++.+.+.. +.+..++..+...|...|++++|...|+++.. |+ ...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999988875 55778888899999999999999999987653 22 222211 2333348
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPN---EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
.|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++... .| +...+..+..++.+.|+++
T Consensus 194 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 89999999999999985 444 778999999999999999999999999853 44 5789999999999999999
Q ss_pred HHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCChhh
Q 005943 577 DAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED-----------PSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 577 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 643 (668)
+|.+.++++ .. +.+...+..+...+.+.|++++|...++++.+..|.+ ..+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999987 33 3467789999999999999999999999999988887 7899999999999999999
Q ss_pred HHHHHHH
Q 005943 644 LSKVRKA 650 (668)
Q Consensus 644 a~~~~~~ 650 (668)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998764
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=5.5e-15 Score=153.02 Aligned_cols=366 Identities=9% Similarity=0.016 Sum_probs=284.7
Q ss_pred chhhHHHHHHHHHc----CCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCC
Q 005943 246 SCFTLSALVDMYSN----CNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVL----NEQNEEAITLLSHIHSSGMCI 317 (668)
Q Consensus 246 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p 317 (668)
++.....+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|...|++..+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 66777788888888 89999999999988542 356677888888888 899999999999998876
Q ss_pred CHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHh----cCChHHHHHHHccCCC-CChh
Q 005943 318 DSYTFTSALKACIN----LLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYAR----LGNVKSALELFHRLPK-KDVV 388 (668)
Q Consensus 318 ~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~ 388 (668)
+...+..+-..+.. .++. +.+...++...+.| ++..+..+...|.. .++.++|.+.|++..+ .+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~ 184 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDK--AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW 184 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 55666666666666 5677 88999999888776 45566667777877 7889999999987654 4667
Q ss_pred hHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc----ccchHhHHHHHHHHHHhCCCCchhHH
Q 005943 389 AWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC----LASLRRGKQVHAFCVKRGFEKEDITL 460 (668)
Q Consensus 389 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 460 (668)
.+..+...|.. .++.++|...|++..+.| +...+..+...+.. .++.++|...++...+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888887 789999999999988775 44555556655554 788999999999887765 34566
Q ss_pred HHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005943 461 TSLIDMYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQN-----GRAKEAIAYFQEMIQSRLKPNEITFLGVL 530 (668)
Q Consensus 461 ~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 530 (668)
..+...|.. .+++++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 667777777 7899999999988765 4566777788888777 89999999999998865 445666676
Q ss_pred HHhhcCC---CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005943 531 SACRHAG---LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDDAEQLIAEMPFKPDKTIWASMLKACET 603 (668)
Q Consensus 531 ~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 603 (668)
..+...| ++++|.++|++.... .+...+..|...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 6676656 788999999988743 457788888888888 78999999999887333467778888888877
Q ss_pred ----hCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 005943 604 ----HNNTKLVSIIAEQLLATSPE---DPSKYVMLSNVYAT 637 (668)
Q Consensus 604 ----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 637 (668)
.+++++|...|+++.+..|+ ++.....++.++.+
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78999999999999998844 66666666665543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.9e-15 Score=143.85 Aligned_cols=271 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred HHHHhcCChHHHHHHHccCCCCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchH
Q 005943 364 DLYARLGNVKSALELFHRLPKKDV----VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLR 439 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 439 (668)
+-....|++..|+..++.....++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 445567999999999887765432 2445577899999999999887654 24567778888888899999999
Q ss_pred hHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005943 440 RGKQVHAFCVKRGFEK-EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR 518 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 518 (668)
+|...++.+...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876444 566677778999999999999999998 457788999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHH
Q 005943 519 LKPNEITF---LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTI 593 (668)
Q Consensus 519 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 593 (668)
.|+.... ..++..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4654321 22334455678999999999999864 3457888999999999999999999999987 3334 6778
Q ss_pred HHHHHHHHHhhCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 594 WASMLKACETHNNTKL-VSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-+
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 8889988888998865 67899999999999986554 455666677665543
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=4.8e-14 Score=145.89 Aligned_cols=351 Identities=11% Similarity=0.015 Sum_probs=289.1
Q ss_pred CeeeHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccccchHHHHHHHHHHHHhCCCC
Q 005943 283 NVALWNSMISGYVL----NEQNEEAITLLSHIHSSGMCIDSYTFTSALKACIN----LLNFNSRFALQVHGLIVTSGYEL 354 (668)
Q Consensus 283 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~ 354 (668)
+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++. +.+...+....+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDY--AQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHCC---
Confidence 56667777777777 899999999999998875 55667777777777 7787 99999999988876
Q ss_pred ccchHHHHHHHHHh----cCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHH
Q 005943 355 DYIVGSNLIDLYAR----LGNVKSALELFHRLPKK-DVVAWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 355 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
++..+..|...|.. .+++++|...|++..+. +...+..+...|.. .++.++|.+.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666678888888 78999999999987654 66778888888887 789999999999998875 56677
Q ss_pred HHHHHHhcc----ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHH
Q 005943 426 SSVLKVCSC----LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIV 496 (668)
Q Consensus 426 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 496 (668)
..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766 899999999999988876 45667778888876 7899999999998765 46667777888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC-----CCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 497 GCGQ----NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA-----GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 497 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
.|.. .+++++|+..|++..+.| +...+..+...+... +++++|..++++.... + +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8877 899999999999998865 455666777777776 8999999999998753 2 4567778888
Q ss_pred HhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 005943 568 LLGQAG---CFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT--- 637 (668)
Q Consensus 568 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 637 (668)
.|...| ++++|.+.|++.-...+...+..+...|.. .+++++|...++++.+.. ++.++..++.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 789999999988434678888889988888 799999999999998864 57799999999998
Q ss_pred -cCChhhHHHHHHHHHhcCC
Q 005943 638 -LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 -~g~~~~a~~~~~~~~~~~~ 656 (668)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.3e-16 Score=156.94 Aligned_cols=261 Identities=8% Similarity=-0.045 Sum_probs=212.3
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888889999999999999999998764 3467788888899999999999999999988875 556788899999
Q ss_pred HHHhcCChHHHHHHhccCCC--CC-----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE--RD-----------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PNEITFLGVLS 531 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 531 (668)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|+..++++.+..-. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988764 21 123344578889999999999999999986311 15778999999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 609 (668)
.+...|++++|...++++... .+.+..++..+..+|.+.|++++|.+.++++ ...| +..++..+..++.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 2335889999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 610 VSIIAEQLLATSPE------------DPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 610 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
|...++++.+..|. +..++..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998766 367899999999999999999887765
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.8e-14 Score=150.73 Aligned_cols=399 Identities=10% Similarity=0.026 Sum_probs=286.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 200 EDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
+...|..++. +.+.|++++|..+|+.+....+. +...|..++..+.+.|++++|.++|++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~------------~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---- 74 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS------------SGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---- 74 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----
Confidence 5678888888 47899999999999999866543 677899999999999999999999999976
Q ss_pred CCCCeeeHHHHHHH-HHhCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------ccccchHHHHHH
Q 005943 280 AYGNVALWNSMISG-YVLNEQNEEAIT----LLSHIHS-SGMCI-DSYTFTSALKACIN---------LLNFNSRFALQV 343 (668)
Q Consensus 280 ~~~~~~~~~~li~~-~~~~~~~~~a~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~~~a~~~ 343 (668)
..|+...|...+.. ....|+.+.|.+ +|+.... .|..| +...|...+..... .|+. +.+..+
T Consensus 75 ~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~a~~~ 152 (530)
T 2ooe_A 75 KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI--TAVRRV 152 (530)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH--HHHHHH
T ss_pred cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH--HHHHHH
Confidence 55777677766643 345677777665 7776654 35554 45566666555443 5677 889999
Q ss_pred HHHHHHhCCCCccchHHHHHHHH-------------HhcCChHHHHHHHcc-------CC------CCC--------hhh
Q 005943 344 HGLIVTSGYELDYIVGSNLIDLY-------------ARLGNVKSALELFHR-------LP------KKD--------VVA 389 (668)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--------~~~ 389 (668)
++...+.........|....... .+.+++..|..+++. +. .|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 98888721111123333222211 123456666655543 11 111 234
Q ss_pred HHHHHHHHHhc----CCc----HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc-------ccchH-------hHHHHHHH
Q 005943 390 WSGLIMGCTKH----GLN----SLAYLLFRDMINSNQDVNQFIISSVLKVCSC-------LASLR-------RGKQVHAF 447 (668)
Q Consensus 390 ~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~ 447 (668)
|...+...... ++. .++..+|++..... +.+...|......+.+ .|+++ +|..++++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 55555433322 233 37788898888753 3456677777776664 68877 88999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 005943 448 CVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD-V-VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN- 522 (668)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 522 (668)
..+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|++++|..+|++..+. .|+
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc
Confidence 87633355688889999999999999999999998764 43 3 47888888889999999999999999885 343
Q ss_pred HHHHHHHHHH-hhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--HHHH
Q 005943 523 EITFLGVLSA-CRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKPD--KTIW 594 (668)
Q Consensus 523 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~ 594 (668)
...|...... +...|++++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++. . ..|+ ...|
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2333322222 34689999999999999854 45 5789999999999999999999999987 2 2332 4478
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
...+......|+.+.+..+.+++.+..|+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888888999999999999999998874
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.7e-15 Score=156.53 Aligned_cols=372 Identities=14% Similarity=0.008 Sum_probs=203.8
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhh-----cCCC-CeeeHHHHHHHHHhCCChhHHHHHHHHHHhC-----C
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAA-----SAYG-NVALWNSMISGYVLNEQNEEAITLLSHIHSS-----G 314 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g 314 (668)
....|+.+...+...|+.++|++.|++..+... ...| ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456789999999999999999999987654211 1123 3567889999999999999999999876542 0
Q ss_pred -CCC-CHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHH
Q 005943 315 -MCI-DSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSG 392 (668)
Q Consensus 315 -~~p-~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 392 (668)
..+ ...++...-.++...+.-..+.|...|+...+.. | .+...+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p------------------------------~~~~~~~~ 177 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--P------------------------------KNPEFTSG 177 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--T------------------------------TCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--C------------------------------CCHHHHHH
Confidence 111 1233333322332222111144444444443322 1 12222222
Q ss_pred HHHH---HHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH----hccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 393 LIMG---CTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKV----CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 393 l~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+..+ +...++.++|++.+++..+... .+...+..+... ....++.++|...++...... +.....+..+..
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 2222 2233444555555555444321 122222222211 222345555555555555443 334445555566
Q ss_pred HHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCH
Q 005943 466 MYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQ-------------------NGRAKEAIAYFQEMIQSRLKPNE 523 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~ 523 (668)
.|...|++++|...+++..+ | +...+..+..+|.. .+.++.|...+++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 66666666666666655442 2 23344444333321 234677888888887742 2334
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh----HHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE----HYYCMVDL-LGQAGCFDDAEQLIAEM-PFKPDKTIWASM 597 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 597 (668)
.++..+...+...|++++|...|++.... .|+.. .+..+... +...|++++|++.+++. ...|+.....
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-- 409 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-- 409 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH--
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH--
Confidence 56788888999999999999999998743 34322 23333332 34678999999999876 5556543322
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCceeEE
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE-KKAGMSWI 664 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 664 (668)
+....+..++++.++.+|.++.+|..++.+|...|++++|++.+++..+.+. .+...+|+
T Consensus 410 -------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2334456778888899999999999999999999999999999999999988 66667764
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=3.7e-17 Score=158.29 Aligned_cols=277 Identities=10% Similarity=0.076 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 005943 338 RFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSN 417 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 417 (668)
+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|...++..++.
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~- 90 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 5555555554 33357778888888888899998888654 56668888888888899999999977766553
Q ss_pred CCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHH
Q 005943 418 QDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVG 497 (668)
Q Consensus 418 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 497 (668)
.+++.+.+.++.+|.+.|+++++.++++ .|+..++..+.+.|...|++++|...|..+ ..|..++.+
T Consensus 91 -~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~ 157 (449)
T 1b89_A 91 -ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAST 157 (449)
T ss_dssp -------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHH
T ss_pred -CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHH
Confidence 4557788888999999999988888775 467779999999999999999999999977 479999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-...++..|.+.|++++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHH
Confidence 99999999999999987 26789999999999999999996654432 2333445578899999999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhh--CCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 578 AEQLIAEM-PFK-PDKTIWASMLKACETH--NNTKLVSIIAEQLLATSP-----EDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 578 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
|..+++.. +.. -....|.-+..++.+- ++..+..+.|..-..+.| .+...|..++.+|.+.++++.|...+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999876 433 3566777777776654 455555555555455556 67889999999999999999888754
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=3.9e-16 Score=148.65 Aligned_cols=251 Identities=8% Similarity=-0.045 Sum_probs=205.5
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcH--HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQ--FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG 471 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (668)
++.....|++..|+..+++... ..|+. .....+.+++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3456678999999998877643 33443 3556678899999999999876654 24667788889999999999
Q ss_pred ChHHHHHHhccCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 005943 472 EIDDGLALFKFMP----ER-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIF 546 (668)
Q Consensus 472 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 546 (668)
+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 25 456677788999999999999999987 467778999999999999999999999
Q ss_pred HhcccccCCCCChhHH---HHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 547 TSMKPEYGLEPHLEHY---YCMVDLLGQAGCFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 547 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999854 4654321 23445555669999999999998 345678899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhh-HHHHHHHHHhcCCCCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDS-LSKVRKAGKKLGEKKA 659 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 659 (668)
|+++.++..++.++...|+.++ +.++++++.+..+..|
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999976 5789999988877443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=8.8e-16 Score=150.11 Aligned_cols=258 Identities=7% Similarity=-0.125 Sum_probs=182.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2234444445555555555555555555555443 3345555566666666
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGI--------------IV-GCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLS 531 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 531 (668)
.|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11122221 22 3677889999999999998863 346778899999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 609 (668)
.+...|++++|...++++... .+.+...+..+..++...|++++|.+.++++ .. +.+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998853 2335788999999999999999999999987 32 3467788999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 610 VSIIAEQLLATSPE------------DPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 610 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
|...++++.+..|. ++.++..++.++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999998 78899999999999999999999987543
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=9.7e-16 Score=152.60 Aligned_cols=299 Identities=12% Similarity=0.060 Sum_probs=150.5
Q ss_pred HHcCCCHHHHHH-HHHHhhhhhhc-CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccc
Q 005943 257 YSNCNVLCEARK-LFDQYSSWAAS-AYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLN 334 (668)
Q Consensus 257 ~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 334 (668)
+.-.|++++|.. .|++....... +..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~---------- 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY---------- 103 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH----------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH----------
Confidence 334567777777 77655432111 11145667788888888888888888888887653 123333333
Q ss_pred cchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC---CCChhhHHHHHHHHHhcCCcHHHHHHHH
Q 005943 335 FNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP---KKDVVAWSGLIMGCTKHGLNSLAYLLFR 411 (668)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 411 (668)
+...+.+.|++++|.+.|+++. ..+..++..+...+...|++++|...++
T Consensus 104 ---------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 104 ---------------------------LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444445555555555554433 1245566666667777777777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C---
Q 005943 412 DMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R--- 486 (668)
Q Consensus 412 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--- 486 (668)
++.......... +... +.... ...+ ...+..+...+ ..|++++|...|+++.+ |
T Consensus 157 ~~~~~~~~~~~~-~~~~-------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 157 DWLRYTPAYAHL-VTPA-------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp HHHHTSTTTGGG-CC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHhCcCcHHH-HHHH-------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc
Confidence 766543221110 0000 00000 0000 00000111112 44555555555554432 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCM 565 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 565 (668)
+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++... .| +...+..+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l 291 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNL 291 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 24455555566666666666666666665531 223445666666666666666666666666532 23 35556666
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP------------DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
..+|.+.|++++|.+.++++ ...| ...+|..+..++...|++++|..++++.+
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 66666666666666666555 1111 14566666666666677766666665443
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=1.5e-15 Score=151.00 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVG 497 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 497 (668)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|+..|+++.+ .+...|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777888899999999999999998875 56788899999999999999999999998764 357789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEI-----------TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMV 566 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 566 (668)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|...++++.....-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 44432 233457788999999999999999986422222578999999
Q ss_pred HHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhH
Q 005943 567 DLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 644 (668)
.+|...|++++|.+.++++ . .+.+..+|..+..++...|++++|...++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2 3346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
...++++.+..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987654
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=169.74 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHcCCChhHHHHhhhhcC-------CCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHH
Q 005943 38 IFTGNNLLSMYADFTSLNDAHKLFDEMA-------RKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSA 110 (668)
Q Consensus 38 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 110 (668)
..+||+||+.|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+. ||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~-PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CcHHHHHH
Confidence 4479999999999999999999998763 589999999999999999999999999999999988 99999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcC
Q 005943 111 VLKACSLSGDL-DLGRLIHERITREKLEYDTVLMNTLLDMYVKCG 154 (668)
Q Consensus 111 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 154 (668)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999985 789999999999999999999999998766653
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=165.62 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=121.1
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhh-hhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSW-AASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTS 324 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 324 (668)
-..+|+++|++|++.|++++|.++|+.|.+. ..|..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3568999999999999999999999988643 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChHHHHHHHccCC
Q 005943 325 ALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVKSALELFHRLP 383 (668)
Q Consensus 325 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (668)
+|.++++.|... +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~-e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDA-GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcH-HHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999998741 6789999999999999999999999988877766666655544443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=1.3e-14 Score=131.91 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=157.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGV 529 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 529 (668)
+++...+..+...+.+.|++++|...|++..+ | +...+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677888888999999999999999998764 3 5778889999999999999999999999985 45 45678888
Q ss_pred HHHhhcC-----------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005943 530 LSACRHA-----------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWAS 596 (668)
Q Consensus 530 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 596 (668)
..++... |++++|...+++..+ ..| +...+..+..+|...|++++|+..|++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999984 356 4788899999999999999999999987 21178889999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+..++...|++++|...++++++..|+++.++..++.++...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988754
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.9e-14 Score=133.02 Aligned_cols=208 Identities=13% Similarity=0.049 Sum_probs=142.9
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C----C----HhHHHHHHHHHHhcCC
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R----D----VVSWTGIIVGCGQNGR 503 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~~~~~ 503 (668)
..|++++|...++...+.. .+...+..+..+|...|++++|...+++..+ | + ...+..+...+...|+
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 3333333333333333333 3444555555555555555555555555442 1 1 3566677777778888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLI 582 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 582 (668)
+++|+..+++..+. .|+.. .+...|++++|...++++.. ..| +...+..+...+...|++++|.+.+
T Consensus 95 ~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 95 LKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888888887773 45532 34455777888888887763 234 4667778888888888888888888
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 583 AEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 583 ~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+++ . .+.+...+..+...+...|++++|...++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 877 2 234567788888888888888888888888888888888888888888888888888888888877654
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.5e-13 Score=140.22 Aligned_cols=396 Identities=11% Similarity=-0.058 Sum_probs=220.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhccc-CchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhh
Q 005943 199 KEDVTLTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFE-CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWA 277 (668)
Q Consensus 199 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 277 (668)
.....|+.|...+...|++++|++.|++..+-.... ...... ....+|+.+...|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~----~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE----HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 446679999999999999999999998765110000 000000 135678899999999999999999998875432
Q ss_pred hcC----CC-CeeeHHHHHHHHHh--CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhccccchHHHHHHHHH
Q 005943 278 ASA----YG-NVALWNSMISGYVL--NEQNEEAITLLSHIHSSGMCID-SYTFTSALKA---CINLLNFNSRFALQVHGL 346 (668)
Q Consensus 278 ~~~----~~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~~~a~~~~~~ 346 (668)
... .+ ...++..+..++.. .+++++|+..|++..+. .|+ ...+..+..+ +...++. +.+...++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~--~~al~~~~~ 200 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS--QNAIDPLRQ 200 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC--CCTHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH--HHHHHHHHH
Confidence 211 11 12345555545544 45799999999998874 354 3333333333 3334455 566666666
Q ss_pred HHHhCCCCccchHHHHHHHHHh----cCChHHHHHHHccCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 005943 347 IVTSGYELDYIVGSNLIDLYAR----LGNVKSALELFHRLPK---KDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQD 419 (668)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 419 (668)
..+.. +.+..++..+...+.. .++.++|.+.+++... .+..++..+...|...|++++|...+++..+...
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 278 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP- 278 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-
Confidence 65543 2233444444444433 3566778777776542 3556677788888888888888888888776532
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIV 496 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 496 (668)
-+...+..+..++...+.... ... ...........+.++.|...++...+ .+...+..+..
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 233344443333321111000 000 00000001112234566666665542 34567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPNEI--TFLGVLS-ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG 573 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 573 (668)
.+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+........
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~------- 412 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK------- 412 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH-------
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH-------
Confidence 9999999999999999999864333222 2233322 3457899999999999887 4466543332222
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 574 CFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 574 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
..+.++++.. . .+.+..+|..+..++...|++++|++.|+++++..|.+|.+...++
T Consensus 413 --~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 --DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233334333 2 2346778999999999999999999999999999998887766554
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.57 E-value=7e-14 Score=136.50 Aligned_cols=229 Identities=11% Similarity=0.012 Sum_probs=192.6
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCG 499 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 499 (668)
..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556677888999999999999998875 45777888899999999999999999998763 36778899999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH-HhhcCCCHHHHHHHHHhcccccCCCCChhHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEI-TFLGV--------------LS-ACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY 563 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 563 (668)
..|++++|+..++++.+. .|+.. .+..+ .. .+...|++++|...++++... .+.+...+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 176 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHA 176 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999985 34433 22222 22 377889999999999999853 233678899
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
.+...|.+.|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999999987 2 3346778999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 005943 642 DSLSKVRKAGKKLGE 656 (668)
Q Consensus 642 ~~a~~~~~~~~~~~~ 656 (668)
++|.+.++++.+..+
T Consensus 257 ~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999987655
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=3.9e-13 Score=136.76 Aligned_cols=377 Identities=10% Similarity=0.034 Sum_probs=207.7
Q ss_pred HHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH---HHHHHHHHHhhhhhhcCCCC
Q 005943 207 LIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL---CEARKLFDQYSSWAASAYGN 283 (668)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ 283 (668)
+...+.+.|++++|+++|++..+++ ++..+..+...|...|+. ++|...|++..+ .+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~------~~ 68 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD------TS 68 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--------------CCTGGGTCC--------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh------CC
Confidence 5667788899999999999876554 455666677777778888 899999988843 26
Q ss_pred eeeHHHHHHHHHhCC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhCCCCccc
Q 005943 284 VALWNSMISGYVLNE-----QNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNS-RFALQVHGLIVTSGYELDYI 357 (668)
Q Consensus 284 ~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 357 (668)
...+..+...+...+ ++++|+..|++..+.|... .+..+-..+...+.... ..+...+......|. +.
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~ 142 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PE 142 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HH
Confidence 667777777555555 6789999999988876433 44444444544443310 223333333333332 33
Q ss_pred hHHHHHHHHHhcCC----hHHHHHHHccCCCCChhhHHHHHHHHHhcC---CcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005943 358 VGSNLIDLYARLGN----VKSALELFHRLPKKDVVAWSGLIMGCTKHG---LNSLAYLLFRDMINSNQDVNQFIISSVLK 430 (668)
Q Consensus 358 ~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 430 (668)
....+...|...+. .+.+..+++.....++..+..|...|...| +.++|+..|++..+.|
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g------------- 209 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG------------- 209 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-------------
Confidence 44445555555553 333444444444445556666666666666 5556666666555544
Q ss_pred HhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CChHHHHHHhccCCCCCHhHHHHHHHH-H--HhcCC
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC----GEIDDGLALFKFMPERDVVSWTGIIVG-C--GQNGR 503 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~ 503 (668)
+++...+..+...|... +++++|...|++....+...+..+... + ...++
T Consensus 210 -----------------------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 210 -----------------------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp -----------------------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred -----------------------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 22333333344444333 466666666665552234455555555 3 45678
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-----CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCC
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG-----LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGC 574 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 574 (668)
+++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|...|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 888888888887765 4555555665555 34 8888888887765 2345666666766665 347
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 575 FDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 575 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
+++|...|++.-...+......+...|.. ..+.++|...|+++.+..+.+.......+......++.++|..+.++
T Consensus 338 ~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888888877323344455555555543 45788888888888876654433333333223344567777777776
Q ss_pred HHhc
Q 005943 651 GKKL 654 (668)
Q Consensus 651 ~~~~ 654 (668)
-++.
T Consensus 418 ~~~~ 421 (452)
T 3e4b_A 418 ELAA 421 (452)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.9e-14 Score=130.53 Aligned_cols=234 Identities=8% Similarity=-0.072 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCC--Cc----hhHHH
Q 005943 388 VAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFE--KE----DITLT 461 (668)
Q Consensus 388 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 461 (668)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+....+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 346667777778888888888888887776 66777777788888888888888888877664311 11 57788
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCC
Q 005943 462 SLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGL 538 (668)
Q Consensus 462 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 538 (668)
.+...|...|++++|...|++..+ |+. ..+...|++++|+..++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888899999999999999887764 442 3466678899999999999884 454 4578888889999999
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 539 VEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 539 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
+++|...++++... .+.+...+..+..+|.+.|++++|.+.++++ .. +.+...|..+...+.+.|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999853 2335788999999999999999999999987 32 34577888999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHHH
Q 005943 617 LLATS------PEDPSKYVMLSNV 634 (668)
Q Consensus 617 ~~~~~------p~~~~~~~~l~~~ 634 (668)
+.+.. |.+..++..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 8877777766653
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.3e-13 Score=130.86 Aligned_cols=240 Identities=8% Similarity=-0.059 Sum_probs=182.8
Q ss_pred cCCcHHHHHHHHHHHHcCCC---CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQD---VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG 476 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 476 (668)
.|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677788888777765321 134566677777777888888888888777764 45677888888999999999999
Q ss_pred HHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 477 LALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 477 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
...|++..+ | +...+..+...+...|++++|+..++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988764 3 5778889999999999999999999999984 555554445555567779999999999887753
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+.+.|++++|...++++.+..|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4777778888889999999877 33332 4678888899999999999999999999999987554
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 005943 628 YVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 628 ~~~l~~~~~~~g~~~~a~~~~ 648 (668)
+ +.++...|++++|++.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788999999998876
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=7.1e-13 Score=123.89 Aligned_cols=199 Identities=11% Similarity=-0.004 Sum_probs=159.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 533 (668)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566677777888888888888877653 356678888888888899999999998888753 33566788888888
Q ss_pred hcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
...|++++|.++++++... +..| +...+..+..+|...|++++|.+.++++ . .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999888751 3455 4667788888889999999999988877 2 233577788888888899999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...++++.+..|.+...+..++.++...|++++|.++++++.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999999999988888999999999999999999999998877663
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=9.7e-13 Score=120.44 Aligned_cols=199 Identities=8% Similarity=-0.049 Sum_probs=156.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566677777778888888877776553 346677778888888888888888888888752 3356678888888
Q ss_pred hhcC-CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHH
Q 005943 533 CRHA-GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTK 608 (668)
Q Consensus 533 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~ 608 (668)
+... |++++|...++++... +..|+ ...+..+..++...|++++|.+.++++ ... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8999999888888752 33443 567788888888899999998888877 223 35777888888888899999
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP-EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...++++.+..| .++..+..++..+...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999998888 8888888888888889999999999888877665
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=4.6e-12 Score=119.90 Aligned_cols=224 Identities=11% Similarity=-0.036 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+..++..+...+...|++++|...|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 44555666666666777777777776665521 2233444444
Q ss_pred HHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 005943 466 MYLK----CGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQ----NGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH- 535 (668)
Q Consensus 466 ~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 535 (668)
.|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 5555555555554432 244555666666666 777777777777777754 55666677777777
Q ss_pred ---CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----h
Q 005943 536 ---AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDDAEQLIAEMPFKPDKTIWASMLKACET----H 604 (668)
Q Consensus 536 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 604 (668)
.+++++|...+++.... + +...+..+...|.. .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77888888887777643 2 45566667777776 77888888888776322356667777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 656 (668)
+++++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888887765 5677888888888 8888888888888877665
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=3.6e-13 Score=125.09 Aligned_cols=198 Identities=9% Similarity=0.056 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666667777777766666543 245566677777777777777777777777642 3345667777777
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ . .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777642 2234666777777777778888877777766 2 233566677777777777888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888777777777777888888888888888888877776655
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=6e-13 Score=125.98 Aligned_cols=174 Identities=11% Similarity=0.014 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcC
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHA 536 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 536 (668)
..+...|...|++++|...|++..+ .+...+..+...|...|++++|+..+++..+. .| +...+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 3344444444444444444443321 12334444444444444444444444444442 22 222333333122223
Q ss_pred CCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGC---FDDAEQLIAEM----PFKPD------KTIWASMLKACE 602 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 602 (668)
+++++|...++++.+. .|+ ...+..+..++...|+ +++|...++++ ...|+ ...|..+...+.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 3555555555554421 222 3444444444444444 44444444443 11122 134555666677
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
..|++++|.+.++++++.+|+++.+...+.......+
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 7777777777777777777777777766666554443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=1.9e-12 Score=122.59 Aligned_cols=222 Identities=9% Similarity=-0.035 Sum_probs=170.3
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~ 505 (668)
+...|++++|...++...+.. +.+...+..+..+|...|++++|+..+++..+ ++ ...|..+...+...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 334444444444444444432 33455777788888889999999888887654 22 234888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
+|+..+++..+.. +.+...+..+...+...|++++|...+++... ..| +...+..+...+...+++++|.+.+++
T Consensus 92 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 92 LAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999853 33456899999999999999999999999984 355 467777787344445699999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 585 M-PFKP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATS---PED-----PSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 585 ~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
+ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|...|++++|.+.++++
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8 3334 46777788888888888 888999999999854 442 257888999999999999999999999
Q ss_pred HhcCCCC
Q 005943 652 KKLGEKK 658 (668)
Q Consensus 652 ~~~~~~~ 658 (668)
.+..+.+
T Consensus 248 l~~~p~~ 254 (272)
T 3u4t_A 248 LALDPTN 254 (272)
T ss_dssp HHHCTTC
T ss_pred HhcCccH
Confidence 9887733
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=4e-12 Score=118.73 Aligned_cols=206 Identities=14% Similarity=0.008 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDM 466 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 466 (668)
...|..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3455666666666666666666666665432 2344556666666
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEA 542 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 542 (668)
|...|++++|.+.|+++.+ .+...+..+...+...|++++|+..++++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6667777777776665542 2456677778888888888888888888877434554 45677788888889999999
Q ss_pred HHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 543 WTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 543 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
...++++... .+.+...+..++.+|...|++++|...++++ .. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999888743 2235778888999999999999999999887 33 346667888888889999999999999999999
Q ss_pred CCCCchhHHH
Q 005943 621 SPEDPSKYVM 630 (668)
Q Consensus 621 ~p~~~~~~~~ 630 (668)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9998766543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=5.5e-13 Score=123.81 Aligned_cols=208 Identities=11% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCh
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRA 504 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 504 (668)
+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 3333444444444444444444322 33456666677777777777777777776543 3566788888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 505 KEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.+++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988863 446678888888999999999999999998843 233578888999999999999999999988
Q ss_pred C-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 585 M-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 585 ~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+ . .+.+...+..+...+...|++++|...++++.+..|+++.++..+..+....|
T Consensus 185 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 7 2 23467788899999999999999999999999999999988887776554443
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=4.2e-12 Score=112.03 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCM 565 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 565 (668)
+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888999999999999999999999885 45 4567888889999999999999999988743 23346777888
Q ss_pred HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
...+...+++++|.+.+.+. . .+.+...+..+...+.+.|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 2 334677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 005943 644 LSKVRKAGKKLGE 656 (668)
Q Consensus 644 a~~~~~~~~~~~~ 656 (668)
|++.+++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887655
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=5e-12 Score=124.33 Aligned_cols=245 Identities=10% Similarity=0.052 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc-hHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS-LRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
...|..+...+.+.|++++|+..+++.+... +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3457777778888888888888888887754 2345667777777777886 888888888888775 456778888888
Q ss_pred HHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-CCCHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRH-AGLVE 540 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~ 540 (668)
++...|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 89999999999999988764 36778888899999999999999999999985 44 46678888888888 56557
Q ss_pred HH-----HHHHHhcccccCCCC-ChhHHHHHHHHhhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhC------
Q 005943 541 EA-----WTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG--CFDDAEQLIAEMPFKP-DKTIWASMLKACETHN------ 605 (668)
Q Consensus 541 ~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------ 605 (668)
+| +..+++... +.| +...|..+..+|.+.| ++++|++.+.++...| +...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477777773 356 4678888888888888 6889998888874444 5567777888877753
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 005943 606 ---NTKLVSIIAEQL-LATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 606 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 638 (668)
..++|+++++++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 889999988898888776654
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1e-11 Score=126.21 Aligned_cols=346 Identities=9% Similarity=-0.044 Sum_probs=186.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhCCCCccchHHHHHHHHH
Q 005943 289 SMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF-NSRFALQVHGLIVTSGYELDYIVGSNLIDLYA 367 (668)
Q Consensus 289 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (668)
.+...+.+.|++++|+.+|++..+.|..+ .+..+-..+...|.. +.+.+...+....+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~---A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSE---AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCT---GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765322 222222222222221 014555555555433 3344444444333
Q ss_pred hcC-----ChHHHHHHHccCCCC-ChhhHHHHHHHHHhcCCcH---HHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 368 RLG-----NVKSALELFHRLPKK-DVVAWSGLIMGCTKHGLNS---LAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 368 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
..+ +.++|...|++..++ +...+..|...|...+... .+.+.+......|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 333 456666666655443 3445666666665554322 34444444444443 22333333444444444
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChHHHHHHhccCCC---CCHhHHHHHHHHHHhc----CChHHHH
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG---EIDDGLALFKFMPE---RDVVSWTGIIVGCGQN----GRAKEAI 508 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~ 508 (668)
+++......+.+.-...++..+..+...|...| +.++|+..|++..+ ++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444433333333222334446667777777777 77777777776543 3333445566666544 5777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC-----ChHHHHH
Q 005943 509 AYFQEMIQSRLKPNEITFLGVLSA-C--RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG-----CFDDAEQ 580 (668)
Q Consensus 509 ~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 580 (668)
..|++.. .| +...+..+... + ...+++++|..+|++.... | +...+..|...|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8877776 32 33344444444 2 4577788888888777642 3 5566666666666 44 7788888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHH
Q 005943 581 LIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT----LGMWDSLSKVRKAGK 652 (668)
Q Consensus 581 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 652 (668)
.|++.- ..+......+...|.. ..++++|...|+++.+. .++.....|+.+|.. ..+.++|..+++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 887777 5566666666666654 33778888888777653 345577777777764 357778888887777
Q ss_pred hcCC
Q 005943 653 KLGE 656 (668)
Q Consensus 653 ~~~~ 656 (668)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7665
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=8e-12 Score=114.29 Aligned_cols=196 Identities=14% Similarity=0.066 Sum_probs=145.1
Q ss_pred hccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhc-CChHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQN-GRAKEA 507 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a 507 (668)
+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++..+ .+...+..+...+... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 333333333333333333332 33455666667777777777777777776542 3566777888888899 999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 508 IAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 508 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..++++.+.+..|+ ...+..+..++...|++++|...++++... .| +...+..++.++.+.|++++|.+.++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888433454 457888888999999999999999998743 34 4788889999999999999999999887
Q ss_pred -C-CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 586 -P-FK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 586 -~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
. .+ .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 174 QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 2 23 4666777777778899999999999999999999988766544
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=1.9e-12 Score=127.37 Aligned_cols=227 Identities=9% Similarity=0.066 Sum_probs=191.9
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHHHHHhccCCC--C-CHhHHHHHHHHH
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGE-IDDGLALFKFMPE--R-DVVSWTGIIVGC 498 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 498 (668)
..+..+..++...|++++|...++.+.+.. +-+...|+.+..++...|+ +++|+..|++... | +...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556667778899999999999999876 5567888999999999997 9999999998874 3 677899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhh-cCCh
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQ-AGCF 575 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 575 (668)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.. ..| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999995 45 567899999999999999999999999984 356 57899999999999 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------
Q 005943 576 DDA-----EQLIAEM-PFKP-DKTIWASMLKACETHN--NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG------- 639 (668)
Q Consensus 576 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 639 (668)
++| ++.+++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 787 4777766 3344 6778888888888877 689999999998 899999999999999999875
Q ss_pred --ChhhHHHHHHHH-HhcCC
Q 005943 640 --MWDSLSKVRKAG-KKLGE 656 (668)
Q Consensus 640 --~~~~a~~~~~~~-~~~~~ 656 (668)
.+++|+++++++ .+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 359999999998 66544
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1.7e-11 Score=115.99 Aligned_cols=227 Identities=8% Similarity=-0.098 Sum_probs=162.2
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCCC-ChhhHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPKK-DVVAWSGLIMGCTK----HGLNSLAYLLFRDMINSNQDVNQFIISSVL 429 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 429 (668)
++..+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4566777888999999999999999987665 56678888888888 899999999998887664 344444444
Q ss_pred HHhcc----ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHh----c
Q 005943 430 KVCSC----LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQ----N 501 (668)
Q Consensus 430 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 501 (668)
..+.. .+++++|...++...+. .+...+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----------------------------------~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----------------------------------KYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------TCHHHHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----------------------------------CCccHHHHHHHHHHcCCCcc
Confidence 44444 44444444444444333 234455556666666 7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cC
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AG 573 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 573 (668)
+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 77888888888877754 45566666666766 78888888888887743 245677778888888 88
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCc
Q 005943 574 CFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 574 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
++++|.+.+++.-...+...+..+...+.. .+++++|...++++.+..|++.
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888888888876222336677777777877 8889999999999988887653
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=7.9e-13 Score=133.68 Aligned_cols=262 Identities=12% Similarity=-0.005 Sum_probs=177.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcH----HHHHHHHHHhccccchHhHHHHHHHHHHh----C-CCCchhHHHH
Q 005943 392 GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQ----FIISSVLKVCSCLASLRRGKQVHAFCVKR----G-FEKEDITLTS 462 (668)
Q Consensus 392 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 462 (668)
.+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666554322 11 34555555566666666666666655433 1 1223445666
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----C----CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE-----R----DVVSWTGIIVGCGQNGR-----------------AKEAIAYFQEMIQ 516 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 516 (668)
+...|...|++++|...+++..+ . ....+..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777778888888777776542 1 23467777778888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 S----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
. +-.|. ..++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11122 236777888888999999999988887643111112 2377888899999999999999888761
Q ss_pred ---CCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 587 ---FKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE------DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ---~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
... ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 2456777888889999999999999999885433 244788899999999999999999998865
Q ss_pred c
Q 005943 654 L 654 (668)
Q Consensus 654 ~ 654 (668)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=1.6e-12 Score=123.17 Aligned_cols=220 Identities=11% Similarity=-0.037 Sum_probs=180.5
Q ss_pred hccccchHhHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChH
Q 005943 432 CSCLASLRRGKQVHAFCVKRGF---EKEDITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 505 (668)
....+++++|...++.+.+... +.+...+..+...+...|++++|...|++..+ .+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556899999999999987632 22466788899999999999999999998763 35788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 506 EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 506 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+|+..|+++.+.. +.+...+..+..++...|++++|...++++.. ..|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999852 33567889999999999999999999999984 3566555555566667789999999999766
Q ss_pred -C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 586 -P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE----DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 586 -~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
. .+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2 23343333 4666778888999999999999886663 367899999999999999999999999988765
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=9.4e-13 Score=134.81 Aligned_cols=193 Identities=11% Similarity=0.005 Sum_probs=167.3
Q ss_pred CCchhHHHHHHHHHHhcCCh-HHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEI-DDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGV 529 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 529 (668)
+.+...+..+..+|...|++ ++|++.|++..+ | +...|..+..+|...|++++|+..|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34667777788888888888 888888887653 3 4678889999999999999999999999984 6887888999
Q ss_pred HHHhhcC---------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc--------CChHHHHHHHHhC-CCCC-
Q 005943 530 LSACRHA---------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA--------GCFDDAEQLIAEM-PFKP- 589 (668)
Q Consensus 530 l~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p- 589 (668)
..++... |++++|...+++..+. .| +...|..+..+|... |++++|.+.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 9999999 9999999999999843 45 578899999999998 9999999999988 3345
Q ss_pred ---CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 590 ---DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 590 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
+...|..+..++...|++++|.+.|+++.+.+|+++.++..++.++...|++++|.+.+.++
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999999765443
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.2e-12 Score=128.02 Aligned_cols=291 Identities=12% Similarity=0.030 Sum_probs=158.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHccCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCCc-HH
Q 005943 356 YIVGSNLIDLYARLGNVKSALELFHRLPK--K-D----VVAWSGLIMGCTKHGLNSLAYLLFRDMINS----NQDVN-QF 423 (668)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~ 423 (668)
...+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33444556667777777777777766542 2 2 235666667777777777777777765432 11111 33
Q ss_pred HHHHHHHHhccccchHhHHHHHHHHHHhCC----C-CchhHHHHHHHHHHhcCC--------------------hHHHHH
Q 005943 424 IISSVLKVCSCLASLRRGKQVHAFCVKRGF----E-KEDITLTSLIDMYLKCGE--------------------IDDGLA 478 (668)
Q Consensus 424 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 478 (668)
.+..+...+...|++++|...++...+... + ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455555666666777777776665544310 0 012355556666666666 666665
Q ss_pred HhccCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHH
Q 005943 479 LFKFMPE-----R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN----EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 479 ~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
.+.+... + ....+..+...+...|++++|+..+++..+..- .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5554321 1 123455556666666666666666666554210 111 1245555666666666666666
Q ss_pred HHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCHHHHHH
Q 005943 545 IFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 545 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
.+++......-.++ ..++..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655422110111 3455566666666666666666665541 1111 3345555555666666666666
Q ss_pred HHHHHHhcCCCC------chhHHHHHHHHHhcCChhhHHH
Q 005943 613 IAEQLLATSPED------PSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 613 ~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
.++++.+..+.. ..++..++.++...|+...+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 666666666555 2345555555655555554443
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=3.8e-12 Score=115.47 Aligned_cols=206 Identities=14% Similarity=0.019 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHH
Q 005943 386 DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLID 465 (668)
Q Consensus 386 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 465 (668)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777776543 2233444444444555555555555555544443 223334444444
Q ss_pred HHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
++...+.. ... .+...|++++|+..+++..+. .|+ ...+..+..++...|++++|+.
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH
Confidence 44443000 000 000016666666666666663 343 4456666666666666666666
Q ss_pred HHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 005943 545 IFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLL 618 (668)
Q Consensus 545 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 618 (668)
.|++..+. . .+...+..+..+|...|++++|...++++ ...| +...+..+...+.+.|++++|...+++..
T Consensus 140 ~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 140 SLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666643 3 45566666666666666666666666665 2223 45556666666666666666666666543
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=3.9e-12 Score=124.43 Aligned_cols=262 Identities=13% Similarity=0.038 Sum_probs=179.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHhccccchHhHHHHHHHHHHh----CCC-CchhHHHHHHH
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVN---QFIISSVLKVCSCLASLRRGKQVHAFCVKR----GFE-KEDITLTSLID 465 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 465 (668)
...+...|++++|...|++..+...... ...+..+...+...|++++|...++...+. +.. .....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4445556666666666666655432111 234555555666666666666666554432 211 12445667777
Q ss_pred HHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGR--------------------AKEAIAYFQEMIQ 516 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~ 516 (668)
.|...|++++|...+++..+ ++ ...+..+...+...|+ +++|+..+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888888888877776542 12 3367777778888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 S----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
. +-.|. ...+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11222 236777888889999999999998887643111112 3478888899999999999999988761
Q ss_pred ---CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 587 ---FKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 587 ---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1122 4567778888999999999999999998854432 44788999999999999999999999876
Q ss_pred cC
Q 005943 654 LG 655 (668)
Q Consensus 654 ~~ 655 (668)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=5.7e-09 Score=109.66 Aligned_cols=217 Identities=8% Similarity=-0.053 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 404 SLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGK-QVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 404 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
+++..+|++.+... +-....|.....-+...|+.+.|. .+++..... ++.+...+-..+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556777776653 346667777777777778888886 899888764 355666677778888888999999999887
Q ss_pred CCC-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-
Q 005943 483 MPE-------------RD------------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS-RLKPNEITFLGVLSACRH- 535 (668)
Q Consensus 483 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~- 535 (668)
+.+ |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 753 21 235777777777888999999999999875 2 1122333322222223
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhhCCHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP----DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a 610 (668)
.++.+.|..+|+...+. ++-+...+..+++.....|+.+.|..+|++. ...| ....|...+.--.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35689999999999864 3335666778888888899999999999987 2233 345788888888889999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
..+.+++.+..|+++
T Consensus 561 ~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999999875
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=4.6e-12 Score=127.72 Aligned_cols=267 Identities=12% Similarity=0.006 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCc---cchHHHHHHHHHhcCChHHHHHHHccCCC-----C---
Q 005943 317 IDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELD---YIVGSNLIDLYARLGNVKSALELFHRLPK-----K--- 385 (668)
Q Consensus 317 p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~--- 385 (668)
+....+...-..+...|++ +.|...++...+...... ..++..+...+...|++++|...+++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDC--RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444555556666667777 777777777766532111 24555666677777777777776665431 1
Q ss_pred -ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCC----C-CcHHHHHHHHHHhccccc--------------------hH
Q 005943 386 -DVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQ----D-VNQFIISSVLKVCSCLAS--------------------LR 439 (668)
Q Consensus 386 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~-~~~~~~~~ll~~~~~~~~--------------------~~ 439 (668)
...++..+...+...|++++|...+++..+... . ....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 123556666677777777777777776654211 0 112355566666667777 77
Q ss_pred hHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChH
Q 005943 440 RGKQVHAFCVKR----GFE-KEDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAK 505 (668)
Q Consensus 440 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 505 (668)
+|...+....+. +.. ....++..+...|...|++++|...+++..+ ++ ...+..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777776655432 111 1123556666777777777777777766542 11 225666667777777777
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChH
Q 005943 506 EAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 506 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 576 (668)
+|+..+++..+. +-.+. ..++..+...+...|++++|...+++......-.++ ..++..+..+|.+.|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 777777766542 11111 235666666777777777777777766532111111 445666777777777777
Q ss_pred HHHHHHHhC
Q 005943 577 DAEQLIAEM 585 (668)
Q Consensus 577 ~A~~~~~~~ 585 (668)
+|.+.+++.
T Consensus 325 ~A~~~~~~a 333 (406)
T 3sf4_A 325 QAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=2.7e-09 Score=112.08 Aligned_cols=408 Identities=11% Similarity=0.008 Sum_probs=275.8
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCCHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ---NEEAITLLSHIHSSG-MCIDSYT 321 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~p~~~t 321 (668)
|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|++.+... ..|+...
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 7889999999999999999999999999763 44456678888888888888 999999999998764 2478877
Q ss_pred HHHHHHHHHhccccc------hHHHHHHHHHHHH-hCC-CCc-cchHHHHHHHHH---------hcCChHHHHHHHccCC
Q 005943 322 FTSALKACINLLNFN------SRFALQVHGLIVT-SGY-ELD-YIVGSNLIDLYA---------RLGNVKSALELFHRLP 383 (668)
Q Consensus 322 ~~~ll~~~~~~~~~~------~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 383 (668)
|..-+....+.++.. .+.+..+|+.... .|. .++ ..+|...+.... ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 777766555544321 1345577776554 466 564 357777766543 2345778889998876
Q ss_pred CCCh----hhHH---HHHHHHH----------hcCCcHHHHHHHHHHHH--cCCC---------------C-----cH--
Q 005943 384 KKDV----VAWS---GLIMGCT----------KHGLNSLAYLLFRDMIN--SNQD---------------V-----NQ-- 422 (668)
Q Consensus 384 ~~~~----~~~~---~l~~~~~----------~~~~~~~a~~~~~~m~~--~~~~---------------~-----~~-- 422 (668)
.-.. .+|. .+..... ...+++.|...+.++.. .++. | +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5211 2222 2221110 01123334455554332 1110 1 11
Q ss_pred -HHHHHHHHHhcccc-------chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-HHhccCCC--C-CHhH
Q 005943 423 -FIISSVLKVCSCLA-------SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL-ALFKFMPE--R-DVVS 490 (668)
Q Consensus 423 -~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~ 490 (668)
..|...+.---..+ ..+.+..+|++.... ++.....|-..+..+.+.|+.++|. .+|++... | +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333332211111 123455667777665 3556777777788888889998996 99987764 4 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRL---------KPN------------EITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
|-..+...-+.|++++|..+|+++.+... .|+ ...|...+....+.|+.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888899999999999999987410 132 235777777778889999999999999
Q ss_pred ccccCCCCChhHHHHHHHHhhhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---
Q 005943 550 KPEYGLEPHLEHYYCMVDLLGQAG-CFDDAEQLIAEM--PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--- 623 (668)
Q Consensus 550 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 623 (668)
.+. ...+....|...+..-.+.| +.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 853 11223455554444444544 589999999987 23345666778888888899999999999999998773
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 624 DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
....|..++..-.+.|+.+.+.++.+++.+.-+++
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45678888888899999999999999999887743
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=5e-11 Score=126.79 Aligned_cols=162 Identities=15% Similarity=0.191 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCM 565 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 565 (668)
...|+.|...|.+.|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+..|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 457888999999999999999999999884 565 56889999999999999999999999884 4664 7889999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 566 VDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|++.|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 4444 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 005943 644 LSKVRKAGKKL 654 (668)
Q Consensus 644 a~~~~~~~~~~ 654 (668)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.6e-11 Score=122.56 Aligned_cols=225 Identities=8% Similarity=-0.029 Sum_probs=154.0
Q ss_pred HHhccccchHhHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----HhHHHHH
Q 005943 430 KVCSCLASLRRGKQVHAFCVKR----GFEK-EDITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD-----VVSWTGI 494 (668)
Q Consensus 430 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l 494 (668)
..+...|++++|...++...+. +-++ ...++..+...|...|+++.|...+.+..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566677777666666543 1111 235667777778888888877777765542 11 3467778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCM 565 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l 565 (668)
...|...|++++|+..+++..+. +-.+. ..++..+..++...|++++|...+++...-. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 88888888999998888887753 11111 1367778888889999999998888876410 2213 36678888
Q ss_pred HHHhhhcCChHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP----F--KP-DKTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
..+|.+.|++++|.+.+++.- . .| ....+..+...+...|+ .++|..++++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 889999999999998888761 1 12 12234556666777888 77777777765 33344456788899999
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 005943 636 ATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~ 655 (668)
...|++++|..++++..+..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=6.6e-11 Score=104.33 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG 570 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 570 (668)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544421 223445555555555666666666666655532 1224555666666666
Q ss_pred hcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 005943 571 QAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVR 648 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 648 (668)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777766665 1 23456667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCC
Q 005943 649 KAGKKLGE 656 (668)
Q Consensus 649 ~~~~~~~~ 656 (668)
+++.+..+
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 88776544
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.3e-12 Score=122.68 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHh------CC
Q 005943 387 VVAWSGLIMGCTKHGLNSLAYLLFRDMINS-------NQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR------GF 453 (668)
Q Consensus 387 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 453 (668)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++...+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887652 11222233334444444444444444444443322 00
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 005943 454 EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITF 526 (668)
Q Consensus 454 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~ 526 (668)
.| .....+..+...|...|++++|+..++++.+. +-.|+ ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00 01234555666666666666666666666553 11222 2356
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhccccc-----CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC
Q 005943 527 LGVLSACRHAGLVEEAWTIFTSMKPEY-----GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP----------FKPD 590 (668)
Q Consensus 527 ~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 590 (668)
..+...+...|++++|..+++++.... +..| ...++..+..+|...|++++|.+.++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 666777777777777777777765321 1122 24566777777777788888777776651 1111
Q ss_pred -------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 591 -------KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 591 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
...+..+...+...+.+.++...++.+....|....++..++.+|...|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223333445566777777888888888888888999999999999999999999887654
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=1.5e-11 Score=124.14 Aligned_cols=234 Identities=12% Similarity=-0.009 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHhccccchHhHHHHHHHHHHh----C-CCCchhH
Q 005943 390 WSGLIMGCTKHGLNSLAYLLFRDMINS----NQ-DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKR----G-FEKEDIT 459 (668)
Q Consensus 390 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 459 (668)
+..+...|...|++++|...+++.... +. ......+..+...+...|++++|...++...+. + .+.....
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444455555555544444321 11 111233444444455555555555555444332 1 1112345
Q ss_pred HHHHHHHHHhcCC-----------------hHHHHHHhccCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 460 LTSLIDMYLKCGE-----------------IDDGLALFKFMPE-----R----DVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 460 ~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
+..+...|...|+ +++|...+++..+ . ....+..+...+...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666777777 6666666655432 1 234677778888888999999888888
Q ss_pred HHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 514 MIQSRL-KPN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP----HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 514 m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
..+..- .++ ..++..+...+...|++++|...+++......-.. ...++..+..+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776310 011 12677888889999999999999888764311111 146778888999999999999999887
Q ss_pred CC-C---CC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 585 MP-F---KP----DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 585 ~~-~---~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
.. . .+ ...++..+...+...|++++|...++++.++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 61 1 11 1346777888899999999999999999987654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.3e-10 Score=110.15 Aligned_cols=217 Identities=8% Similarity=0.045 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc-------cccch-------HhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 005943 404 SLAYLLFRDMINSNQDVNQFIISSVLKVCS-------CLASL-------RRGKQVHAFCVKRGFEKEDITLTSLIDMYLK 469 (668)
Q Consensus 404 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 469 (668)
++|..+|++.+... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777766542 334444544444443 23443 5666666665552112334455566666666
Q ss_pred cCChHHHHHHhccCCC--CC-Hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hcCCCHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--RD-VV-SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC-RHAGLVEEAWT 544 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 544 (668)
.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665543 22 22 55566666666666666666666666532 12222333222221 12466666666
Q ss_pred HHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 005943 545 IFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKP--DKTIWASMLKACETHNNTKLVSIIAEQL 617 (668)
Q Consensus 545 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 617 (668)
+|++..+. .| +...|..++..+.+.|++++|..+|++. . ..| ....|..++..+.+.|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666532 22 3555566666666666666666666655 1 133 2445555555555666666666666666
Q ss_pred HhcCCCCc
Q 005943 618 LATSPEDP 625 (668)
Q Consensus 618 ~~~~p~~~ 625 (668)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 66666543
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=6e-11 Score=104.55 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA 532 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 532 (668)
+..+|..+...|.+.|++++|+..|++..+ | +...+..+..+|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788889999999999999999998764 3 57788889999999999999999999988853 3345677778888
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a 610 (668)
+...++++.|...+++.... .+.+...+..+..+|.+.|++++|++.|++. ... .+...|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998743 2335788899999999999999999999987 333 4677899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
+..|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998763
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=1.6e-10 Score=105.80 Aligned_cols=190 Identities=15% Similarity=0.068 Sum_probs=99.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE----RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVL 530 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 530 (668)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555555555666666666666554432 34444444555555666666666666665552 333 23455555
Q ss_pred HHhhcCCCHHHHHHHHHhcccccCCCCC-h-------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 005943 531 SACRHAGLVEEAWTIFTSMKPEYGLEPH-L-------EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KTIWASML 598 (668)
Q Consensus 531 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 598 (668)
.++...|++++|...+++..+. .|+ . ..|..+...+...|++++|.+.++++ ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5556666666666666555532 232 2 33455555555555556665555554 33343 23344444
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
..+... +...++++..+.+.++..+... .....|.+++|...+++..+..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 444332 2233444444444443333222 223344559999999999887763
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=1.2e-10 Score=119.29 Aligned_cols=179 Identities=10% Similarity=-0.013 Sum_probs=156.6
Q ss_pred hHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 473 IDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRA-KEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 473 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
++++...+++... .+...+..+...+...|++ ++|+..|++..+. .|+ ...|..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555554332 3677889999999999999 9999999999985 454 6789999999999999999999999
Q ss_pred hcccccCCCCChhHHHHHHHHhhhc---------CChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhh--------CCHH
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQA---------GCFDDAEQLIAEM-PFK-PDKTIWASMLKACETH--------NNTK 608 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~--------~~~~ 608 (668)
+.. ...|+...+..+..+|... |++++|.+.++++ ... .+...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4578888999999999999 9999999999988 333 4678899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP---EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 609 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+|...|+++++.+| .++..+..++.+|...|++++|.+.+++..+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988766
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=3.8e-09 Score=104.92 Aligned_cols=261 Identities=10% Similarity=-0.035 Sum_probs=121.9
Q ss_pred HHHHHHhcCChHHHHHHHccCC----CCChh----hHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCcH----HHHHHH
Q 005943 362 LIDLYARLGNVKSALELFHRLP----KKDVV----AWSGLIMGCTKHGLNSLAYLLFRDMINSNQ-DVNQ----FIISSV 428 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~----~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l 428 (668)
....+...|++++|...+++.. ..+.. +++.+...+...|++++|...+++...... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777766655432 11211 344455556666777777776666544211 0111 123344
Q ss_pred HHHhccccchHhHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCChHHHHHHhccCCC--C------CHhHHHH
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKR----GFE--K-EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R------DVVSWTG 493 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~ 493 (668)
...+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ....+..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44555566666666666554432 111 1 122344455555566666666655554321 0 1223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHH
Q 005943 494 IIVGCGQNGRAKEAIAYFQEMIQSRLKPN--EITFL----GVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYC 564 (668)
Q Consensus 494 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 564 (668)
+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.... ...+. ...+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHH
Confidence 55555556666666666655544211111 11111 1122244556666666666555422 11110 113344
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEMP-------FKPDK-TIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
+..++...|++++|.+.+++.. ..++. ..+..+..++...|+.++|...++++....+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 5555555566666555555441 00111 13333444455556666666666655555443
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=8.6e-11 Score=114.81 Aligned_cols=259 Identities=11% Similarity=0.032 Sum_probs=156.8
Q ss_pred HHHhcCChHHHHHHHccCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHh
Q 005943 365 LYARLGNVKSALELFHRLPK--K-D----VVAWSGLIMGCTKHGLNSLAYLLFRDMINS----NQDV-NQFIISSVLKVC 432 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~ 432 (668)
.+...|++++|...|+++.+ + + ...+..+...+...|++++|...+++.... +..| ....+..+...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34444555555555544321 1 1 123444555555555555555555544321 1111 123444455555
Q ss_pred ccccchHhHHHHHHHHHHhCC-CCc----hhHHHHHHHHHHhcCC--------------------hHHHHHHhccCCC--
Q 005943 433 SCLASLRRGKQVHAFCVKRGF-EKE----DITLTSLIDMYLKCGE--------------------IDDGLALFKFMPE-- 485 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~-- 485 (668)
...|++++|...+....+... .++ ..++..+...|...|+ +++|...+++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555443210 011 2355566666667777 6777666655432
Q ss_pred ---C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 486 ---R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 486 ---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
+ ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++.....
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 133577777888888899999888888765310 011 2267778888889999999999888876421
Q ss_pred CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 554 GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 554 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.-.++ ..++..+...|...|++++|.+.+++.- ..++ ..++..+...+.+.|++++|...++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11112 5677888899999999999999988761 1111 3467778888999999999999999999876
Q ss_pred CC
Q 005943 622 PE 623 (668)
Q Consensus 622 p~ 623 (668)
+.
T Consensus 334 ~~ 335 (338)
T 3ro2_A 334 RE 335 (338)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=2.6e-09 Score=102.64 Aligned_cols=213 Identities=9% Similarity=0.086 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHhccCCC---C-CHhHHHHHHHHHHh
Q 005943 439 RRGKQVHAFCVKRGFEKEDITLTSLIDMYL-------KCGEI-------DDGLALFKFMPE---R-DVVSWTGIIVGCGQ 500 (668)
Q Consensus 439 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 500 (668)
++|..+|++..... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776653 455666666666654 34775 788888876543 3 45577788888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhh-hcCChHH
Q 005943 501 NGRAKEAIAYFQEMIQSRLKPNE-I-TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLG-QAGCFDD 577 (668)
Q Consensus 501 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 577 (668)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887 45543 2 6777777778888888888888888732 1223445544433322 3688888
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 578 AEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLAT---SPE-DPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 578 A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
|.++|+++ . .+.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 2 2235667777777788888888888888888885 342 5567778888888888888888888888
Q ss_pred HhcCC
Q 005943 652 KKLGE 656 (668)
Q Consensus 652 ~~~~~ 656 (668)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 77666
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=3.1e-09 Score=105.94 Aligned_cols=164 Identities=11% Similarity=0.082 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-H
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPN-E 523 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~ 523 (668)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4567777888888888888888876653 11 236778888999999999999999988772 33243 4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccC---CCCChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCCH-HHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG---LEPHLEHYYCMVDLLGQAGC---FDDAEQLIAEMPFKPDK-TIWAS 596 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ 596 (668)
.++..+..++.+.|++++|...+++...... -+.....+..+...|...|+ +++|+.++++....|+. ..+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5788899999999999999999988764311 11123346778888999999 89999999999655543 35677
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
+...+...|++++|...++++.+..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888999999999999999998743
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=115.93 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=148.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHccCCC--------C---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHHc------C
Q 005943 355 DYIVGSNLIDLYARLGNVKSALELFHRLPK--------K---DVVAWSGLIMGCTKHGLNSLAYLLFRDMINS------N 417 (668)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 417 (668)
+..++..+...+...|++++|...++++.+ . ...++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456778889999999999999999988764 2 2346788889999999999999999998764 2
Q ss_pred CCC-cHHHHHHHHHHhccccchHhHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhH
Q 005943 418 QDV-NQFIISSVLKVCSCLASLRRGKQVHAFCVKRG------FEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVS 490 (668)
Q Consensus 418 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 490 (668)
..| ....+..+...+...|++++|...++...+.. ..|. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 222 34566777777888888888888887765431 1111 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc------CCCC
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY------GLEP 557 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p 557 (668)
+..+...+...|++++|+..++++.+. +-.|. ..++..+..++...|++++|...++++.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555556666666666555542 11232 2356666667777777777777776665310 1111
Q ss_pred C-------hhHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 005943 558 H-------LEHYYCMVDLLGQAGCFDDAEQLIAEMP-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 558 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 623 (668)
. ...+..+...+...+.+.+|...++... ..| +..++..+...+.+.|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555666666666663 233 4557888888999999999999999999987664
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=8.1e-10 Score=97.20 Aligned_cols=168 Identities=8% Similarity=-0.006 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSAC 533 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 533 (668)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999875 357788899999999999999999999998862 44567888899999
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
...|++++|...++++... .+.+...+..+..++...|++++|.+.++++ . .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998853 3346788899999999999999999999987 2 3346778889999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 005943 612 IIAEQLLATSPEDPSK 627 (668)
Q Consensus 612 ~~~~~~~~~~p~~~~~ 627 (668)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988887643
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=6.7e-10 Score=101.64 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=162.1
Q ss_pred CcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHH
Q 005943 420 VNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIV 496 (668)
Q Consensus 420 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 496 (668)
.++..+......+...|++++|...++...+..-+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999887436777777799999999999999999998764 4 4668889999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC---hhHHHHH
Q 005943 497 GCGQNGRAKEAIAYFQEMIQSRLKPN-E-------ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH---LEHYYCM 565 (668)
Q Consensus 497 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 565 (668)
++...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++.. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999985 444 4 457778888999999999999999998 44665 5677788
Q ss_pred HHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 566 VDLLGQAGCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
..+|...|+. +++++. ...+...|.... ....+.+++|...++++.++.|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 233321 122344444433 345677999999999999999999988888776643
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=2e-10 Score=114.37 Aligned_cols=222 Identities=9% Similarity=-0.039 Sum_probs=148.5
Q ss_pred HhccccchHhHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCChHHHHHHhccCCC-----C-----CHhHHHHHH
Q 005943 431 VCSCLASLRRGKQVHAFCVKRGF-EK----EDITLTSLIDMYLKCGEIDDGLALFKFMPE-----R-----DVVSWTGII 495 (668)
Q Consensus 431 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 495 (668)
.+...|++++|...++...+... .+ ...++..+...|...|+++.|...+.+..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556677777777666654311 11 234566777778888888777776665432 1 134677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcccccC--CCC-ChhHHHHHHH
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEYG--LEP-HLEHYYCMVD 567 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~ 567 (668)
..|...|++++|++.+++..+. +-.+. ..++..+..++...|++++|...+++...-.. ..| ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877653 11111 23677788888888999999888888764100 123 2667788888
Q ss_pred HhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 568 LLGQAGCFDDAEQLIAEM----PF--KPD-KTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ ..+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 899999999998888876 11 122 3344555555666777 67777776662 2334445577789999999
Q ss_pred cCChhhHHHHHHHHHh
Q 005943 638 LGMWDSLSKVRKAGKK 653 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~ 653 (668)
.|++++|..++++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999888765
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=5e-09 Score=97.30 Aligned_cols=242 Identities=11% Similarity=0.005 Sum_probs=106.7
Q ss_pred HHHHHhcCChHHHHHHHccCCCCChh-hHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhH
Q 005943 363 IDLYARLGNVKSALELFHRLPKKDVV-AWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRG 441 (668)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 441 (668)
++-..-.|.+..++.-...+...+.. .-.-+.++|...|++... ..-.|....+..+...+. .+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----H
Confidence 33444567777777755555433222 222234666666665521 112233223333222221 11 3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 442 KQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER-----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
...++++...+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444333 233333344455555555555555555544221 233444455555555555555555555554
Q ss_pred CCCCC-----CHHHHHHHHHH--hhc--CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 005943 517 SRLKP-----NEITFLGVLSA--CRH--AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMP- 586 (668)
Q Consensus 517 ~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 586 (668)
..| +..+...+..+ ... .+++.+|..+|+++..+ .|+..+...+..++.+.|++++|.+.++.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244 13333333333 111 22555555555555422 3332222223335555555555555554331
Q ss_pred C-----------CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 587 F-----------KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 587 ~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
. +.|..++..++......|+ .|.++++++.+..|+++.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 0 1133333233333333343 455555555555555543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=2e-08 Score=99.72 Aligned_cols=224 Identities=10% Similarity=0.017 Sum_probs=147.6
Q ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHhccccchHhHHHHHHHHHHhCC-----C-CchhHHHHHHH
Q 005943 397 CTKHGLNSLAYLLFRDMINSNQ-DVN----QFIISSVLKVCSCLASLRRGKQVHAFCVKRGF-----E-KEDITLTSLID 465 (668)
Q Consensus 397 ~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~~ 465 (668)
+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4445555555555555443210 011 22344444455555555555555554443210 1 12345667777
Q ss_pred HHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 005943 466 MYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPNEITFLGVLSA 532 (668)
Q Consensus 466 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~ 532 (668)
.|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..+++..+. +-+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 88888888888877776543 12 346777888889999999999999888761 222235578888889
Q ss_pred hhcCCCHHHHHHHHHhcccccCCC--C-ChhHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhC
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLE--P-HLEHYYCMVDLLGQAGC---FDDAEQLIAEMPFKPDK-TIWASMLKACETHN 605 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~ 605 (668)
+.+.|++++|...+++......-. | ....+..+...|...|+ +.+|+.++++....|+. ..+..+...+...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCC
Confidence 999999999999999877532221 2 23456677777788888 88999999987644443 35567777899999
Q ss_pred CHHHHHHHHHHHHhc
Q 005943 606 NTKLVSIIAEQLLAT 620 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~ 620 (668)
++++|...++++.+.
T Consensus 351 ~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 351 HFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998763
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.5e-09 Score=103.03 Aligned_cols=222 Identities=16% Similarity=0.193 Sum_probs=153.0
Q ss_pred ccccchHhHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------C-CHhHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKR-------GFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE----------R-DVVSWTGI 494 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l 494 (668)
...|++++|...+++..+. ..+....++..+...|...|++++|...+++..+ | ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 2233466788889999999999999998887652 1 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc-----CCCC-ChhH
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQS------RLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY-----GLEP-HLEH 561 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 561 (668)
...|...|++++|+..+++..+. .-.|+ ..++..+...+...|++++|...++++.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11233 4478888889999999999999999887431 1123 3567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhhCC------HHHHHHHHHHHHhcCCCC
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP----------FKPD-KTIWASMLKACETHNN------TKLVSIIAEQLLATSPED 624 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 624 (668)
+..+..+|...|++++|.++++++. ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999988761 1222 2233333333333222 333333333333344556
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 625 PSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..++..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999987654
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.04 E-value=1.6e-08 Score=100.30 Aligned_cols=261 Identities=13% Similarity=0.035 Sum_probs=136.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCcHH----HHHHHHHHhccccchHhHHHHHHHHHHhCCC-Cc----hhHHHHH
Q 005943 393 LIMGCTKHGLNSLAYLLFRDMINSNQDVNQF----IISSVLKVCSCLASLRRGKQVHAFCVKRGFE-KE----DITLTSL 463 (668)
Q Consensus 393 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 463 (668)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+++.....-. .+ ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556666777777666665543222222 3344445555666677666666655442110 11 1224445
Q ss_pred HHHHHhcCChHHHHHHhccCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 005943 464 IDMYLKCGEIDDGLALFKFMPE-------R----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK--P--NEITFLG 528 (668)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ 528 (668)
...+...|++++|...+++... + ....+..+...+...|++++|...+++..+..-. + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 5666666777666666654431 1 1223445556666667777777776666553111 1 1234555
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHH-----HHHHHhhhcCChHHHHHHHHhCC-CCCC-----HHHHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYY-----CMVDLLGQAGCFDDAEQLIAEMP-FKPD-----KTIWASM 597 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 597 (668)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 66666666777777666666543211111111111 22334556677777777666652 1111 2234455
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 598 LKACETHNNTKLVSIIAEQLLATSPE-----D-PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 598 ~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
...+...|++++|...++++.+..+. + ..++..++.++...|++++|...+++..+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55566667777777666666553221 1 12455566666667777777666666543
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=7.2e-09 Score=94.36 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEI----TFLG 528 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ 528 (668)
.+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344445556666777777766666552 32 234555666666667777777777666663 23221 2333
Q ss_pred HHHHhhc------------------CCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 005943 529 VLSACRH------------------AGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP 589 (668)
Q Consensus 529 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 589 (668)
+..++.. .|++++|...|+++.+ ..|+ ...+........- .. ..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~----~~------~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFL----KD------RL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHH----HH------HH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHH----HH------HH----
Confidence 3333332 3444555555555442 1232 1111111100000 00 00
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP---SKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
......+...+.+.|+++.|+..|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+++.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455668899999999999999999999986 568999999999999999999999999887743
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=9.7e-09 Score=96.06 Aligned_cols=182 Identities=10% Similarity=0.004 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL-KPN-EITFLG 528 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 528 (668)
...+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+..- .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444445555556666666666655543 21 33455555555566666666666666555310 111 223444
Q ss_pred HHHHhhc--------CCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005943 529 VLSACRH--------AGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLK 599 (668)
Q Consensus 529 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 599 (668)
+..++.. .|++++|...|+++... .|+ ......+.......++. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4445554 55556666555555532 232 12221110000000000 001244556
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CChhhHHHHHHHHHhcCC
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNVYATL----------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 656 (668)
.+.+.|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 6777788888888888887777774 34677777777765 777778888877776655
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=7e-09 Score=85.54 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=81.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 603 (668)
+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555422 1123445555555566666666666666555 1 22345566667777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7888888888888888778777788888888888888888888887776554
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=8.2e-10 Score=93.09 Aligned_cols=140 Identities=13% Similarity=0.021 Sum_probs=99.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcC
Q 005943 496 VGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG 573 (668)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 573 (668)
..+...|++++|+..++..... .|+. ..+..+...|.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3445566777777777776552 3432 3455677777888888888888887773 345 4677778888888888
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 574 CFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSI-IAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 574 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
++++|...|++. ...| +...|..+...+.+.|++++|.+ +++++++++|.++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 3344 56677778888888888766554 4588888888888888888888877775
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=4.2e-08 Score=91.15 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=168.7
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005943 394 IMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEI 473 (668)
Q Consensus 394 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (668)
++...-.|++..++.-..++ ...........+.+++...|++.... .-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 34445678888777633222 21222233344456666666655321 122333344444433 3332
Q ss_pred HHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 474 DDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 474 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
|+..|++... ++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666665552 455666788889999999999999999987754322 4557888899999999999999999999
Q ss_pred ccccCCCC-----ChhHHHHHHHH--hhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 550 KPEYGLEP-----HLEHYYCMVDL--LGQAG--CFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 550 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.+ ..| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 74 366 35556666655 33334 899999999999 3446644445555588899999999999998877
Q ss_pred c----------CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 005943 620 T----------SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKKA 659 (668)
Q Consensus 620 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 659 (668)
. +|+++.++..++.+....|+ +|.++++++.+..+..|
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 5 48899999888888888897 89999999998776443
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=2.3e-09 Score=114.07 Aligned_cols=162 Identities=14% Similarity=0.190 Sum_probs=135.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLS 531 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 531 (668)
+...++.+...|.+.|++++|++.|++..+ | +...|..+..+|.+.|++++|+..|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456788888888899999999998887763 4 5678888999999999999999999998884 555 568888999
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTK 608 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 608 (668)
++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. ...| +...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998884 356 4788899999999999999999999887 4445 5678888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 005943 609 LVSIIAEQLLATSP 622 (668)
Q Consensus 609 ~a~~~~~~~~~~~p 622 (668)
+|.+.++++.++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887543
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.1e-08 Score=95.07 Aligned_cols=172 Identities=11% Similarity=-0.018 Sum_probs=138.4
Q ss_pred HHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 476 GLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 476 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333343333334556777888889999999999999999985 45 4568888999999999999999999999843
Q ss_pred CCCChhHHHHH-HHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHH
Q 005943 555 LEPHLEHYYCM-VDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYV 629 (668)
Q Consensus 555 ~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~ 629 (668)
.|+....... ...+...++.++|.+.+++. . .+.+...+..+...+...|++++|...++++++.+|++ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5664433333 33466778888899888877 3 33467888999999999999999999999999999998 88999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 005943 630 MLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.++.++...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999988764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=1.4e-09 Score=103.50 Aligned_cols=200 Identities=8% Similarity=-0.006 Sum_probs=131.7
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C--CHhHHHHHHHHHHhcCChHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-------R--DVVSWTGIIVGCGQNGRAKEA 507 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a 507 (668)
++++|...+... ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466666666554 3456677888888777765542 1 145778888888888999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHhhcC-CCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHH
Q 005943 508 IAYFQEMIQSRL---KPN--EITFLGVLSACRHA-GLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 508 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 577 (668)
+..+++..+... .+. ..++..+..+|... |++++|+..|++...-..-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888776310 111 24677888888885 9999999988887742110111 3567788889999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--hcCCh
Q 005943 578 AEQLIAEM-PFKPD---K-----TIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSK-----YVMLSNVYA--TLGMW 641 (668)
Q Consensus 578 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 641 (668)
|++.+++. ...|+ . ..|..+..++...|+++.|...++++++++|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99998876 22222 1 146667777888899999999999999888875543 344555554 34556
Q ss_pred hhHHHHHHHH
Q 005943 642 DSLSKVRKAG 651 (668)
Q Consensus 642 ~~a~~~~~~~ 651 (668)
++|+..++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 6666666443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=8.2e-09 Score=96.59 Aligned_cols=205 Identities=12% Similarity=0.059 Sum_probs=146.2
Q ss_pred CCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----Hh
Q 005943 419 DVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE---DITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----VV 489 (668)
Q Consensus 419 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~ 489 (668)
+.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++..+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777788889999999999999998764 223 56778889999999999999999998764 32 34
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChh
Q 005943 490 SWTGIIVGCGQ--------NGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLE 560 (668)
Q Consensus 490 ~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 560 (668)
.+..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999985 4543 222111 111111100 012
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETH----------NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 625 (668)
.+..+..+|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556777888888888888888876 22232 34566666667655 899999999999999999986
Q ss_pred h---hHHHHHHHHHhcCChhhHH
Q 005943 626 S---KYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 626 ~---~~~~l~~~~~~~g~~~~a~ 645 (668)
. +...+..++.+.|+++++.
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 4 4555666666666665544
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=2.7e-09 Score=89.89 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhC
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHN 605 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 605 (668)
|...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|.+.|++. ...| +...|..+...+.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999999887 33553 566778999999999999999999988 3444 6788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH-HHHHHhcCCCC
Q 005943 606 NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV-RKAGKKLGEKK 658 (668)
Q Consensus 606 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~ 658 (668)
++++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999987765 58888776643
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=1e-08 Score=97.58 Aligned_cols=201 Identities=9% Similarity=-0.027 Sum_probs=127.1
Q ss_pred hccccchHhHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----HhHHHHHHHH
Q 005943 432 CSCLASLRRGKQVHAFCVKR----GFEKE-DITLTSLIDMYLKCGEIDDGLALFKFMPE-----RD----VVSWTGIIVG 497 (668)
Q Consensus 432 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 497 (668)
+...|++++|...+.+..+. |.++. ..+|+.+..+|.+.|++++|+..|++..+ .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445555555555444332 21111 34566667777777777777766665542 11 3467778888
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCC-CCh-----hHHH
Q 005943 498 CGQN-GRAKEAIAYFQEMIQSRLKPN-------EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLE-PHL-----EHYY 563 (668)
Q Consensus 498 ~~~~-~~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~-----~~~~ 563 (668)
|... |++++|+..|++..+. .|+ ..++..+...+...|++++|...|++.... ... +.. ..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHH
Confidence 8885 8999999888888763 221 246778888888999999999999888743 211 111 1567
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEM-PFKPDKT------IWASMLKACE--THNNTKLVSIIAEQLLATSPEDPSKYVMLSNV 634 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 634 (668)
.+..++...|++++|...+++. ...|+.. .+..++.++. ..+++++|+..|+++..++|.....+..+-..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 7788888899999999999887 3444322 2344555553 34678888888888877777765555544443
Q ss_pred H
Q 005943 635 Y 635 (668)
Q Consensus 635 ~ 635 (668)
+
T Consensus 284 ~ 284 (292)
T 1qqe_A 284 I 284 (292)
T ss_dssp H
T ss_pred h
Confidence 3
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.5e-08 Score=88.07 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHH-
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL- 568 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 568 (668)
+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...+++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 444556677778888888888877663 34 4456777778888888888888888888743 3443333322222
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCChhhH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED--PSKYVMLSNVYATLGMWDSL 644 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a 644 (668)
+...+...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334567777766 3344 57788889999999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHHh
Q 005943 645 SKVRKAGKK 653 (668)
Q Consensus 645 ~~~~~~~~~ 653 (668)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=3.5e-08 Score=81.24 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLL 569 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 569 (668)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888889999999998888753 335667777888888889999999999888743 233567788888899
Q ss_pred hhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 570 GQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999998877 2 23467778888888999999999999999999888763
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=8.5e-09 Score=110.44 Aligned_cols=168 Identities=10% Similarity=-0.059 Sum_probs=86.5
Q ss_pred HhcCChHHHHHHhccCC--------C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 005943 468 LKCGEIDDGLALFKFMP--------E---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHA 536 (668)
Q Consensus 468 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 536 (668)
...|++++|++.+++.. + .+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555555443 1 233445555555555555666665555555531 12334555555555555
Q ss_pred CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSII 613 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 613 (668)
|++++|...|++..+ ..| +...+..+..+|.+.|++++ .+.|+++ ...| +...|..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666655555552 233 34555555555555565555 5555554 2222 344555555555556666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 614 AEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 614 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
|+++.+++|.+..++..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666655566555555555555544433
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=3e-08 Score=93.87 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE----------R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS------RL 519 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 519 (668)
..++..+...|...|++++|...|.+..+ | ....+..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666666655431 1 2345666777777788888888888777664 11
Q ss_pred CCC-HHHHHHHHHHhhcCCCHHHHHHHHHhccccc------CCCC-ChhHHHHHHHHhhhcCC------hHHHHHHHHhC
Q 005943 520 KPN-EITFLGVLSACRHAGLVEEAWTIFTSMKPEY------GLEP-HLEHYYCMVDLLGQAGC------FDDAEQLIAEM 585 (668)
Q Consensus 520 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 585 (668)
.|+ ..++..+..++...|++++|...+++..... ...+ ....+..+...+...+. +.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3467777888888888888888888776420 1122 23344444444433332 33444444444
Q ss_pred C-CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 005943 586 P-FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLAT 620 (668)
Q Consensus 586 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 620 (668)
. ..| ...++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 223 3446777888899999999999999998764
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=1.8e-08 Score=84.23 Aligned_cols=103 Identities=7% Similarity=0.013 Sum_probs=90.0
Q ss_pred CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 554 GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 554 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.+.|+ ...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..|+++.+++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45664 667888888999999999999999988 3334 67788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+|...|++++|+..+++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887665
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=2.8e-08 Score=104.63 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=117.1
Q ss_pred cCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 005943 470 CGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTI 545 (668)
Q Consensus 470 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 545 (668)
.|++++|.+.|++..+ | +...|..+...+...|++++|+..+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4778889999888774 3 4677888888999999999999999998885 44 466788888899999999999999
Q ss_pred HHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh---CCHHHHHHHHHHHHh
Q 005943 546 FTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH---NNTKLVSIIAEQLLA 619 (668)
Q Consensus 546 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 619 (668)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9988843 45 4778888999999999999999999887 3333 567788888888888 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 005943 620 TSPEDPSKYVMLS 632 (668)
Q Consensus 620 ~~p~~~~~~~~l~ 632 (668)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888877766
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=6.3e-07 Score=80.39 Aligned_cols=161 Identities=7% Similarity=-0.135 Sum_probs=119.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC----CHHHHHHHHHhcccccCCCCChhHH
Q 005943 487 DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG----LVEEAWTIFTSMKPEYGLEPHLEHY 562 (668)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 562 (668)
++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++.... -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 45556666666667778888888888877764 45566666666766 5 788888888887532 245667
Q ss_pred HHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 563 YCMVDLLGQ----AGCFDDAEQLIAEMP-FKPD---KTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 563 ~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
..|...|.. .+++++|.++|++.- ..|+ ...+..+...|.. .+++++|...|+++.+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 777777776 778888888888773 3342 6777778887777 77899999999998887 666778888
Q ss_pred HHHHHHhc-C-----ChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATL-G-----MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 656 (668)
|+.+|... | ++++|..++++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888754 3 89999999998887765
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=1.7e-08 Score=84.67 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445555666666667777776666665 22 2355566666666667777777777777777777777777777777777
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|...+++..+..+
T Consensus 101 ~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 77777777777766665544
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=1.5e-07 Score=84.73 Aligned_cols=126 Identities=10% Similarity=0.036 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACET 603 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 603 (668)
+..+...+...|++++|...+++.. .|+...+..+..+|.+.|++++|.+.+++. . .+.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555566677777777666653 345666666777777777777777776665 2 22345566667777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 604 HNNTKLVSIIAEQLLATSPEDP----------------SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|++++|...++++.+..|.+. .++..++.+|...|++++|.+.+++..+..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777777666655 6777777777777777777777777766544
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=5.1e-08 Score=79.03 Aligned_cols=106 Identities=10% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 601 (668)
.+......+.+.|++++|++.|++..+ ..| +...|..+..+|.+.|++++|++.+++. .. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 444555555555555555555555542 123 3445555555555555555555555544 21 22344555555555
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
...|++++|++.|+++++++|+++.++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 55555555555555555555555555544443
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=7.3e-08 Score=86.33 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLL 569 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 569 (668)
..+..+|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|++..+ ..| +...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 34888899999999999999999985 45 466888899999999999999999999984 356 477888888888
Q ss_pred hhcCC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 570 GQAGC--FDDAEQLIAEMPFKPDKT--IWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 570 ~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
...|. .+.+...++... .|+.. .+.....++...|++++|+..|++++++.|++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 76654 445566666663 33333 34445556777899999999999999999974
No 108
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=8.3e-07 Score=84.40 Aligned_cols=163 Identities=9% Similarity=-0.021 Sum_probs=123.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI----TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 561 (668)
+...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++......-.++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677888999999999999988742 223321 2334666777888999999999998752111223 236
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP-----F---KPD-KTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 626 (668)
++.+..+|...|++++|.+.++++- . .+. ..++..+...|.+.|++++|...++++++..+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999888762 1 111 2367888889999999999999999999854332 66
Q ss_pred hHHHHHHHHHhcCC-hhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGM-WDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 653 (668)
+|..++.+|...|+ +++|.+.+++..+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999995 6999999988764
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=1.6e-07 Score=90.08 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=150.1
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc-ccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 400 HGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSC-LASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 400 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
.|++++|.+++++..+.... + +.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46677888888776543211 0 112 35666666665543 456777788888887
Q ss_pred HhccCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhcCCCHHHHHH
Q 005943 479 LFKFMPE-----RD----VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSR---LKPN--EITFLGVLSACRHAGLVEEAWT 544 (668)
Q Consensus 479 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~ 544 (668)
.|.+..+ .+ ...|+.+...|...|++++|+..|++..+.- -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7776542 11 3478888889999999999999998876531 1222 2467788888888 99999999
Q ss_pred HHHhcccccCCC---C-ChhHHHHHHHHhhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhhCCHHHHHH
Q 005943 545 IFTSMKPEYGLE---P-HLEHYYCMVDLLGQAGCFDDAEQLIAEMP-F---KPD----KTIWASMLKACETHNNTKLVSI 612 (668)
Q Consensus 545 ~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~ 612 (668)
.|++...-..-. + ...++..+..+|.+.|++++|++.+++.- . .++ ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998877421101 1 14678888999999999999999998771 1 122 2255566666777899999999
Q ss_pred HHHHHHhcCCCCchh-----HHHHHHHHHhcCChhhHHHH
Q 005943 613 IAEQLLATSPEDPSK-----YVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 613 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 647 (668)
.+++++ ..|..... +..++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88875433 34455555 56777766663
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=3.5e-08 Score=105.73 Aligned_cols=152 Identities=11% Similarity=-0.026 Sum_probs=133.3
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH
Q 005943 499 GQNGRAKEAIAYFQEMI--------QSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL 568 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 568 (668)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...++++.+. .| +...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHH
Confidence 78899999999999998 4 344 4567888888999999999999999999853 55 57889999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHH
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
|...|++++|.+.|+++ ...| +...|..+..++.+.|++++ ++.|+++++.+|++..++..++.+|.+.|++++|+.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 3344 56788889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 005943 647 VRKAGKKLGE 656 (668)
Q Consensus 647 ~~~~~~~~~~ 656 (668)
.+++..+.++
T Consensus 556 ~~~~al~l~P 565 (681)
T 2pzi_A 556 TLDEVPPTSR 565 (681)
T ss_dssp HHHTSCTTST
T ss_pred HHHhhcccCc
Confidence 9988766544
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.2e-07 Score=76.71 Aligned_cols=103 Identities=6% Similarity=0.037 Sum_probs=91.3
Q ss_pred CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 554 GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 554 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.+.|+ ...+......|.+.|++++|++.|++. ... .+...|..+..++.+.|++++|+..++++++++|.++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34564 567788899999999999999999987 333 467888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++.+|...|++++|++.+++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999988776
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.70 E-value=1.8e-07 Score=98.38 Aligned_cols=150 Identities=16% Similarity=0.100 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHH
Q 005943 502 GRAKEAIAYFQEMIQSRLKP-NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
|++++|+..+++..+. .| +...+..+...+...|++++|.+.+++.. ...| +...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555442 22 23445555555555555555555555554 2233 2445555555555555555555
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc---CChhhHHHHHHHHHhc
Q 005943 580 QLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL---GMWDSLSKVRKAGKKL 654 (668)
Q Consensus 580 ~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 654 (668)
+.+++. ... .+...+..+...+.+.|++++|.+.++++.+..|+++..+..++.++... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 555544 112 23445555555555555555555555555555555555555555555555 5555555555555544
Q ss_pred CC
Q 005943 655 GE 656 (668)
Q Consensus 655 ~~ 656 (668)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=4.3e-07 Score=86.36 Aligned_cols=164 Identities=9% Similarity=-0.042 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHhhcCCCHHHHHHHHHhcccccC--CCCC--hh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-E----ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG--LEPH--LE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 560 (668)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567778888999999999988877532211 1 1244455667888999999999888763211 1121 44
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------Cc
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD-----KTIWASMLKACETHNNTKLVSIIAEQLLATSPE------DP 625 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 625 (668)
+++.+...|...|++++|.+.++++- ..|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999988761 1222 257888888999999999999999999885422 15
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 005943 626 SKYVMLSNVYATLGMWDSL-SKVRKAGKK 653 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 653 (668)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777777653
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.69 E-value=1.6e-07 Score=84.18 Aligned_cols=158 Identities=8% Similarity=0.042 Sum_probs=118.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhcCCCHHHHHHHHHhcccccCC
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLG----------------VLSACRHAGLVEEAWTIFTSMKPEYGL 555 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 555 (668)
.....+...|++++|+..|++..+. .|+. ..+.. +..++.+.|++++|...|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 3445566778888888888887773 4543 34555 888999999999999999999843
Q ss_pred CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC--HHHHHHHHHHHHhcCCCCchhHHH
Q 005943 556 EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN--TKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 556 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.| +...+..+..+|...|++++|.+.|++. ...| +...|..+...+...|+ .+.+...++.+....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 56 5788999999999999999999999988 3344 67788888888765543 44556666666543332 235666
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 631 LSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 631 l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+.++...|++++|+..+++..+..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 78888899999999999999987665
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.1e-07 Score=79.19 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=68.8
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+.+.|++++|...|++. ... .+...|..+..++.+.|++++|...++++++.+|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445556666777777777777777766 222 355666667777777777777777777777777777777777777777
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|.+.+++..+..+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777766544
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=2.4e-07 Score=87.67 Aligned_cols=134 Identities=11% Similarity=-0.021 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005943 520 KPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASM 597 (668)
Q Consensus 520 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 597 (668)
+.+...+..+...+...|++++|...|++.... .| +...+..+..+|.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334456777888899999999999999999853 56 5788999999999999999999999998 345766544433
Q ss_pred HH-HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 598 LK-ACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 598 ~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.. .+...++.+.|...++++.+.+|+++..+..++.+|...|++++|...++++.+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 366788899999999999999999999999999999999999999999999998776
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=1.6e-06 Score=81.46 Aligned_cols=148 Identities=10% Similarity=0.083 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--HHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC----
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE--EAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC---- 574 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 574 (668)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ ++++.++++... .| |...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 34555555555555431 223344444444444444444 555555555422 22 34444444444444443
Q ss_pred --hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCChhhHHH
Q 005943 575 --FDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNT-KLVSIIAEQLLATS---PEDPSKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 575 --~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 646 (668)
++++++.++++ . .+-|...|+.+...+.+.|+. +.+..+.+++.+++ |.++.++..++.+|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 45555555444 1 122444555555444444442 22334444444433 4555555555555555555556665
Q ss_pred HHHHHHh
Q 005943 647 VRKAGKK 653 (668)
Q Consensus 647 ~~~~~~~ 653 (668)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=3.5e-07 Score=78.39 Aligned_cols=127 Identities=8% Similarity=-0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACE 602 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 602 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. . .+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777777777777777642 1224667777777888888888888887766 2 2335677888888889
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChhhHHHHHHHHHh
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNV--YATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 653 (668)
..|++++|...++++.+..|.+...+..+..+ +...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988887554444 7888999999999887754
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=2.7e-07 Score=83.79 Aligned_cols=185 Identities=13% Similarity=0.024 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHhccccchHhHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCChHHHHHHhccCCC--CCH----hHHH
Q 005943 421 NQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFE-K-EDITLTSLIDMYLKCGEIDDGLALFKFMPE--RDV----VSWT 492 (668)
Q Consensus 421 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~ 492 (668)
+...+......+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667788999999999999999886421 1 235677788999999999999999998764 432 1444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHhccccc
Q 005943 493 GIIVGCGQ------------------NGRAKEAIAYFQEMIQSRLKPNEI-TFLGVLSACRHAGLVEEAWTIFTSMKPEY 553 (668)
Q Consensus 493 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 553 (668)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555543 57899999999999985 56543 2222111 001111111
Q ss_pred CCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 554 GLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 554 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|++++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678889999999999999987 33343 246777888899999999999999999988887643
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=1.6e-06 Score=77.75 Aligned_cols=174 Identities=7% Similarity=-0.077 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 005943 440 RGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE-RDVVSWTGIIVGCGQNG----RAKEAIAYFQEM 514 (668)
Q Consensus 440 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 514 (668)
+|...|....+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3445555555544 556667777777788888888888887664 356677777777777 6 899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHhcccccCCCCC---hhHHHHHHHHhhh----cCChHHHHHHHH
Q 005943 515 IQSRLKPNEITFLGVLSACRH----AGLVEEAWTIFTSMKPEYGLEPH---LEHYYCMVDLLGQ----AGCFDDAEQLIA 583 (668)
Q Consensus 515 ~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 583 (668)
.+.| +...+..+...|.. .+++++|..+|++.... .|+ ...+..|..+|.. .+++++|.+.|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56677777777877 88999999999998843 443 6788888888888 789999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhcCCC
Q 005943 584 EM-PFKPDKTIWASMLKACETH-N-----NTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 584 ~~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p~ 623 (668)
+. ...++...+..+...|... | +.++|...++++.+....
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88 3334566777777777643 3 899999999998886543
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.62 E-value=2.8e-06 Score=86.67 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCC-hhHHHHHHHHHHhC-CCCC-CHHHHHH
Q 005943 248 FTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQ-NEEAITLLSHIHSS-GMCI-DSYTFTS 324 (668)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ 324 (668)
.+|...+..+-. |+.+.+..+|++... ..|+...|...+.-..+.+. .+....+|+..... |..| +...|..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLK----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 445555555544 778888888888755 45677777777766665553 35566677766553 4333 5555655
Q ss_pred HHHHHHh----ccccchHHHHHHHHHHHH
Q 005943 325 ALKACIN----LLNFNSRFALQVHGLIVT 349 (668)
Q Consensus 325 ll~~~~~----~~~~~~~~a~~~~~~~~~ 349 (668)
.+..+.. .++. +.+..+++....
T Consensus 91 Yi~f~~~~~~~~~~~--~~vR~iy~rAL~ 117 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRI--EKIRNGYMRALQ 117 (493)
T ss_dssp HHHHTSSCSSHHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHH--HHHHHHHHHHHh
Confidence 5555432 3445 667777777776
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=3e-07 Score=79.77 Aligned_cols=156 Identities=8% Similarity=0.005 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSA-CR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 534 (668)
.+......+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .|+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344556677788888888888888875 35667888888888888888888888887664 3444333222211 12
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhhCCHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD---KTIWASMLKACETHNNTKL 609 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~ 609 (668)
..+....|...+++..+ ..| +...+..+..++...|++++|...++++ ...|+ ...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233346777777773 355 4778888888899999999999988877 44443 4578888888888899999
Q ss_pred HHHHHHHHHh
Q 005943 610 VSIIAEQLLA 619 (668)
Q Consensus 610 a~~~~~~~~~ 619 (668)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887654
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=4.7e-07 Score=73.80 Aligned_cols=117 Identities=10% Similarity=-0.044 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKAC 601 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 601 (668)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666666777777777777777777642 1234667777778888888888888887766 22 33567788888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888764
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=4.9e-07 Score=72.95 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005943 523 EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKA 600 (668)
Q Consensus 523 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 600 (668)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|..+++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666777777777777777777642 1234566777777777888888888877766 2 23456677888888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLG 639 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 639 (668)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999998888888888877654
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=8e-05 Score=75.89 Aligned_cols=371 Identities=12% Similarity=0.021 Sum_probs=195.9
Q ss_pred CC-ChHHHHHHhhccC----CCCcchHHHHhhhccc--CchhhHHHHHHHHHcCCC-HHHHHHHHHHhhhhhhcCC-CCe
Q 005943 214 CG-EIDDGLALFNFMP----ERDVVSWTGIIVGCFE--CSCFTLSALVDMYSNCNV-LCEARKLFDQYSSWAASAY-GNV 284 (668)
Q Consensus 214 ~g-~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~ 284 (668)
.| +++.|..+|+.+. ..+......+..-+.. |+...|...+....+.++ .+....+|+..... .|.. ++.
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~-vg~d~~s~ 85 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ-FENYWDSY 85 (493)
T ss_dssp -----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHH-STTCTTCH
T ss_pred cCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-cCCCcccH
Confidence 45 3666666666655 2233222222222222 688888888888877664 35566777766542 1222 244
Q ss_pred eeHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHH
Q 005943 285 ALWNSMISGYV----LNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS 360 (668)
Q Consensus 285 ~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (668)
..|...+.-+. .+++.+.+..+|++.+.....--...|..... +....+. ..+..+......
T Consensus 86 ~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~--~~~~~~~~~~~~----------- 151 (493)
T 2uy1_A 86 GLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNK--ITGKKIVGDTLP----------- 151 (493)
T ss_dssp HHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCH--HHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhcc--ccHHHHHHHHhH-----------
Confidence 55666665443 24567788888988887321111112221111 1111111 222222211110
Q ss_pred HHHHHHHhc-CChHHHHHHHccCCCCChhhHHHHHHHHHhcC--C-----cHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 005943 361 NLIDLYARL-GNVKSALELFHRLPKKDVVAWSGLIMGCTKHG--L-----NSLAYLLFRDMINSNQDVNQFIISSVLKVC 432 (668)
Q Consensus 361 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 432 (668)
.|.+. ..++.+..++.. .+...|...+.--...+ - .+.+..+|++.+... +.++..|...+.-+
T Consensus 152 ----~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 152 ----IFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 00000 001222222221 12334544444322211 1 235667788877653 34466666667777
Q ss_pred ccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH-HHHhccCC----------C--CCHhHHHHHHHHHH
Q 005943 433 SCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDG-LALFKFMP----------E--RDVVSWTGIIVGCG 499 (668)
Q Consensus 433 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~----------~--~~~~~~~~l~~~~~ 499 (668)
...|+++.|..++++.... +.+...+.. |+...+.++. ..+.+... . .....|...+....
T Consensus 224 ~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 7788888888888888877 444333322 2221111111 11111110 0 11234666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 500 QNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR-HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 500 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.++ -+...+...++...+.|+.+.|
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHH
Confidence 777889999999888 32 1123334432222111 23368899999998886532 2345566778888888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 579 EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 579 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 374 R~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 374 RALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999884 3577788888877788999988888888775
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=5.4e-07 Score=73.75 Aligned_cols=114 Identities=11% Similarity=-0.054 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKA 600 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 600 (668)
..+..+...+...|++++|...+++... ..| +...+..+..+|...|++++|.+.++++ . .+.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4566666666667777777777666652 233 4566666777777777777777777665 2 22356677777778
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 601 CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
+.+.|++++|...++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888877664
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=1.6e-07 Score=81.64 Aligned_cols=125 Identities=8% Similarity=0.049 Sum_probs=75.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHH-hhhcCCh
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDL-LGQAGCF 575 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 575 (668)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.... .| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 344566777777777766642 334556666667777777777777777776632 33 45556666666 5566666
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 576 --DDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 576 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 7777766665 2223 4555666666666777777777777777777666644
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=1.1e-06 Score=79.08 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 005943 460 LTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLV 539 (668)
Q Consensus 460 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 539 (668)
+..+...+...|++++|...|++...++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44456666777777777777777777777777777777777777777777777777642 33455667777777777777
Q ss_pred HHHHHHHHhccc
Q 005943 540 EEAWTIFTSMKP 551 (668)
Q Consensus 540 ~~a~~~~~~~~~ 551 (668)
++|...+++...
T Consensus 88 ~~A~~~~~~al~ 99 (213)
T 1hh8_A 88 DLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=7.3e-07 Score=81.70 Aligned_cols=125 Identities=9% Similarity=-0.070 Sum_probs=68.2
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHHhh
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDK----TIWASMLKACETH 604 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 604 (668)
+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455566666666666665532 343224444555566666666666666554322222 2444555556666
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 605 NNTKLVSIIAEQLLATS--PE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++....+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66666666666665422 33 333555666666666666666666666655443
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=2.6e-07 Score=89.58 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=107.2
Q ss_pred ChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 005943 472 EIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTS 548 (668)
Q Consensus 472 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 548 (668)
++++|...|+.... | +...+..+...+.+.|++++|+..|++..+. .|+... . ..+.+.+. ..
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-~~~~~~~~-~~ 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS----------F-SNEEAQKA-QA 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC----------C-CSHHHHHH-HH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhcccc----------C-ChHHHHHH-HH
Confidence 34444444443332 2 3345556666666666666666666666653 232110 0 00111100 00
Q ss_pred cccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 005943 549 MKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPS 626 (668)
Q Consensus 549 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 626 (668)
.....|..+..+|.+.|++++|+..++++ .. +.+...|..+..++...|++++|+..|+++++++|.+..
T Consensus 194 --------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 --------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 01367778888888888888888888877 22 346778888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChhhH-HHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSL-SKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a-~~~~~~~~ 652 (668)
++..++.++...|++++| ...++.|.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 44566554
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=2.9e-05 Score=72.98 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=162.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc--chHhHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CC
Q 005943 402 LNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA--SLRRGKQVHAFCVKRGFEKEDITLTSLIDMY----LKC---GE 472 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 472 (668)
..++|++++.+++..+ +-+...|+.--.++...+ +++++...++.+.... +-+..+++.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777653 122333444444555555 7888888887777664 33444554433333 344 78
Q ss_pred hHHHHHHhccCCC---CCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC------HHH
Q 005943 473 IDDGLALFKFMPE---RDVVSWTGIIVGCGQNGRAK--EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL------VEE 541 (668)
Q Consensus 473 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~ 541 (668)
+++++.+++.+.+ .|...|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8999999988874 46667777777777788888 9999999999864 3356677777666777776 889
Q ss_pred HHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 542 AWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDD-AEQLIAEMP-F----KPDKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 542 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
+++.++++.. ..| |...|+-+..++.+.|+..+ +.++..+.- . ..+...+..+..++.+.|+.++|.+++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999988884 355 68889888888988888555 555777652 1 346778888999999999999999999
Q ss_pred HHHHh-cCCCCchhHHHHHH
Q 005943 615 EQLLA-TSPEDPSKYVMLSN 633 (668)
Q Consensus 615 ~~~~~-~~p~~~~~~~~l~~ 633 (668)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99997 79998888776554
No 132
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=7.3e-07 Score=70.28 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPE--DPSKYVMLSN 633 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 633 (668)
+...+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888999999999988877 2 2346778888888899999999999999999999999 9999999999
Q ss_pred HHHhc-CChhhHHHHHHHHHhcCC
Q 005943 634 VYATL-GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 634 ~~~~~-g~~~~a~~~~~~~~~~~~ 656 (668)
++... |++++|.+.+++..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999988876
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=6.5e-07 Score=72.57 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
..+..+...+.+.|++++|.+.|++. .. +.+...|..+..++.+.|++++|+..++++++.+|.++.++..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666655 22 23455666666666666677777777777766666666666667777777
Q ss_pred cCChhhHHHHHHHHHhcC
Q 005943 638 LGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~ 655 (668)
.|++++|...+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 777777776666665544
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=5.3e-07 Score=72.35 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT 637 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 637 (668)
..+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999988 3334 777888888999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCC
Q 005943 638 LGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~~ 656 (668)
.|++++|+..+++..+..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887655
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=6.8e-07 Score=74.61 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=87.1
Q ss_pred CCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005943 519 LKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIW 594 (668)
Q Consensus 519 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 594 (668)
+.|+. ..+..+...+.+.|++++|...|++... ..| +...|..+..+|...|++++|++.|+++ ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45544 3677788889999999999999999984 356 5788889999999999999999999988 3334 56788
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
..+..++.+.|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8899999999999999999999999998864
No 136
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=5.2e-07 Score=86.38 Aligned_cols=200 Identities=9% Similarity=-0.056 Sum_probs=149.2
Q ss_pred cccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 434 CLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 434 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
..|++++|..++++..+..- .. .+...++++.|...|. .....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHH
Confidence 35788889998887766431 11 0111577888877755 456788899999999999998
Q ss_pred HHHCCC---CCC--HHHHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHh
Q 005943 514 MIQSRL---KPN--EITFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAE 584 (668)
Q Consensus 514 m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 584 (668)
..+... .+. ..+|..+..+|...|++++|...+++...-. |-.. ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 111 2478888899999999999999998876321 1111 14678888999988 999999999987
Q ss_pred C-CCC-----C--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCChhhHHHHHHH
Q 005943 585 M-PFK-----P--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP------SKYVMLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 585 ~-~~~-----p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 650 (668)
. ... + ...++..+...+.+.|++++|+..++++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 111 1 145778888899999999999999999999765443 3667788888899999999999999
Q ss_pred HHhcCC
Q 005943 651 GKKLGE 656 (668)
Q Consensus 651 ~~~~~~ 656 (668)
.. ..+
T Consensus 221 al-~~p 225 (307)
T 2ifu_A 221 SY-SIP 225 (307)
T ss_dssp HT-TST
T ss_pred Hh-CCC
Confidence 88 544
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=1.3e-05 Score=75.92 Aligned_cols=157 Identities=6% Similarity=-0.038 Sum_probs=119.3
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----CCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005943 463 LIDMYLKCGEIDDGLALFKFMPE-----RDV----VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PN----EITFLG 528 (668)
Q Consensus 463 l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 528 (668)
.+..+...|++++|..++++..+ ++. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999987653 121 13345667777888999999999999984322 22 236889
Q ss_pred HHHHhhcCCCHHHHHHHHHhccccc----CCCCC-hhHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEY----GLEPH-LEHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-KTIWA 595 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 595 (668)
+..+|...|++++|...++++.... +..+. ..++..+..+|.+.|++++|.+.+++. ...+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11222 447889999999999999999998876 12222 56788
Q ss_pred HHHHHHHhhC-CHHHHHHHHHHHHh
Q 005943 596 SMLKACETHN-NTKLVSIIAEQLLA 619 (668)
Q Consensus 596 ~l~~~~~~~~-~~~~a~~~~~~~~~ 619 (668)
.+..++.+.| ++++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888999999 46999999999886
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=1.8e-07 Score=88.17 Aligned_cols=191 Identities=6% Similarity=-0.072 Sum_probs=122.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKP-NEITFLGVLS 531 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 531 (668)
+...+..+...+.+.|++++|+..|++... | +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666777777888888877776653 3 5667777888888888888888888888774 44 4557777788
Q ss_pred HhhcCCCHHHHHHHHHhcccccCCCCCh-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHH
Q 005943 532 ACRHAGLVEEAWTIFTSMKPEYGLEPHL-EHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 532 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 610 (668)
++...|++++|...|++.... .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 888888888888888877632 2321 111111111111111111111 2222223333333333 222 36888999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhc-CChhhHHHHHHHHHhc
Q 005943 611 SIIAEQLLATSPEDPSKYVMLSNVYATL-GMWDSLSKVRKAGKKL 654 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 654 (668)
.+.++++.+.+|++......+...+.+. +.+++|.++++.+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777777777766 7788999999887764
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=1e-06 Score=75.34 Aligned_cols=109 Identities=11% Similarity=-0.014 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+...+..+...+...|++++|+..|++.... .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456788888889999999999999998843 45 5788888999999999999999999887 3334 577888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.++...|++++|...|++++++.|++...+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 88999999999999999999999998886655443
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=1.9e-06 Score=70.94 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=56.9
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|...|++. .. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455555555566666666666655554 11 223455555555566666666666666666666666666666666666
Q ss_pred HhcCChhhHHHHHHHHHhc
Q 005943 636 ATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~ 654 (668)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 6666666666666665543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=7.6e-06 Score=74.97 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHh
Q 005943 492 TGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLL 569 (668)
Q Consensus 492 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 569 (668)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34566677788888888888877764 455445555555788888999998888866531 1 121 24677788888
Q ss_pred hhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 570 GQAGCFDDAEQLIAEMPFK---PD--KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 570 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
.+.|++++|+..|++.... |. .........++.+.|+.++|...|+++...+|. +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8999999999998877212 43 335666777788899999999999999999988 66665554
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.7e-06 Score=68.87 Aligned_cols=107 Identities=13% Similarity=0.018 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKACE 602 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~ 602 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4444555555555666665555555432 1123445555555555555555555555544 111 23444555555555
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
..|++++|...++++.+..|.++..+..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555555555555555555555555444443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.9e-06 Score=70.46 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=90.1
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4678888999999999999999999987 4444 6778888999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|.+.+++..+..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999987665
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=2.1e-06 Score=69.10 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|.+.++++ . .+.+...+..+...+.+.|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 2 33467788889999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988766
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=3.6e-06 Score=79.93 Aligned_cols=162 Identities=5% Similarity=-0.058 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC--C-C------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPE--R-D------VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRL---KPN--E 523 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 523 (668)
..+...+..+...|++++|.+.+.+..+ + . ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444567778888999999888864432 1 1 12344466667888899999999999876421 222 3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC-----hhHHHHHHHHhhhcCChHHHHHHHHhC-C------CCC-C
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH-----LEHYYCMVDLLGQAGCFDDAEQLIAEM-P------FKP-D 590 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~ 590 (668)
.+|+.+...|...|++++|...+++........|+ ..++..+..+|.+.|++++|.+.+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999988732111222 258888999999999999999999876 1 111 1
Q ss_pred HHHHHHHHHHHHhhCCHHHH-HHHHHHHHh
Q 005943 591 KTIWASMLKACETHNNTKLV-SIIAEQLLA 619 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 619 (668)
..+|..+...+.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888889999999999 788888776
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=5.9e-07 Score=75.10 Aligned_cols=114 Identities=7% Similarity=-0.034 Sum_probs=87.0
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005943 511 FQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF 587 (668)
Q Consensus 511 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 587 (668)
++++.+ +.|+. ..+..+...+...|++++|...|++.... .| +...|..+..+|...|++++|.+.|+++ ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 34543 35666777888889999999888888742 44 5777888888889999999999988877 23
Q ss_pred CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 588 KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 588 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.| +...+..+..++...|++++|...|+++++..|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 33 5667888888899999999999999999999888776543
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=2.2e-06 Score=75.99 Aligned_cols=169 Identities=7% Similarity=-0.088 Sum_probs=101.6
Q ss_pred HHhcCChHHHHHHhccCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPER---DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAW 543 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 543 (668)
....|+++++.+.|+..... ....+..+...+...|++++|+..|++..+. .|+...+... ....-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~- 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK- 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH-
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH-
Confidence 33445666666666543321 3345666666677777777777777777663 2221100000 00000
Q ss_pred HHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 544 TIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 544 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
... .....+..+..+|.+.|++++|+..+++. . .+.+...+..+..++...|++++|...++++++..
T Consensus 83 --~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 --KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred --HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 000 01356777788888888888888888876 2 23467788888899999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChhhHH-HHHHHHHhcCC
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLS-KVRKAGKKLGE 656 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~ 656 (668)
|.++.++..++.++...|+.+++. ..++.+...+.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999998888 66777766554
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.5e-06 Score=70.35 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 005943 523 EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWAS 596 (668)
Q Consensus 523 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 596 (668)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|.+.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555666666666666666655 23444 445555555566666666666655554 1122 3445555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+..++...|++++|...++++++..|.+..++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555666666666666666666666555555554443
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=5.2e-06 Score=69.27 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667777777888888888888888776 45565 456677777777888888888888888888888877888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 005943 633 NVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 633 ~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+|...|++++|...+++..+..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 888888888888888887776654
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=5.5e-06 Score=73.58 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhccccc---CCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC-C----H
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEY---GLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P---FKP-D----K 591 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~ 591 (668)
.+..+...+...|++++|...+++..... +..| ....+..+...|...|++++|.+.+++. . ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44444555555555555555554443210 1111 1334555555556666666655555544 0 011 1 2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLATS--PED----PSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..+..+...+...|++++|...++++.+.. ..+ ..++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 234555556666677777777776666532 111 12345667777777777777777666654
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=1.6e-06 Score=75.18 Aligned_cols=122 Identities=6% Similarity=0.046 Sum_probs=93.8
Q ss_pred hhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhhCCH--
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKA-CETHNNT-- 607 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~~~~-- 607 (668)
+...|++++|...+++.... .+.+...+..+..+|...|++++|...++++ ... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888887743 2235678888888899999999999988877 222 356677777777 6678887
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 608 KLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 608 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++|...++++++..|.++..+..++.+|...|++++|...++++.+..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8899999999999998888888999999999999999999988887766
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=5e-06 Score=66.04 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455667777888888888888888876 2 23366677777778888888888888888888888888888888888888
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 005943 637 TLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 637 ~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|++++|...+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 88888888888888777655
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.6e-06 Score=68.98 Aligned_cols=93 Identities=8% Similarity=-0.010 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP-------SKYVML 631 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l 631 (668)
.+..+...+.+.|++++|++.|++. ...| +...|..+..++.+.|++++|++.+++++++.|.+. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445566666666666666666655 2223 455566666666666677777777776666655543 245556
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 005943 632 SNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 632 ~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777776666544
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=4.3e-06 Score=67.88 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P-FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4667888899999999999999999987 2 3346778888999999999999999999999999999999999999999
Q ss_pred HhcCChhhHHHHHHHHHhcCC
Q 005943 636 ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 636 ~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988765
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=2.1e-06 Score=69.74 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=55.5
Q ss_pred HHHHhhcCCCHHHHHHHHHhcccccCCCCC-h---hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005943 529 VLSACRHAGLVEEAWTIFTSMKPEYGLEPH-L---EHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPD----KTIWASMLK 599 (668)
Q Consensus 529 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 599 (668)
+...+...|++++|...|+++... .|+ . ..+..+..++.+.|++++|...++++ ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555666666666666666532 232 2 35555666666666666666666555 11222 344555555
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 005943 600 ACETHNNTKLVSIIAEQLLATSPEDPSKYVML 631 (668)
Q Consensus 600 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 631 (668)
++...|++++|...++++.+..|+++......
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 56666666666666666666666655444333
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.4e-06 Score=67.54 Aligned_cols=109 Identities=9% Similarity=-0.080 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 601 (668)
.+..+...+.+.|++++|...|++.... .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4555566666777777777777776632 33 4667777777777777777777777766 2233 566777788888
Q ss_pred HhhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATS------PEDPSKYVMLSNVYA 636 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 636 (668)
...|++++|...++++++.+ |.++.+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888888888888888888 777777776665543
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=3.6e-06 Score=69.81 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFK-PDKTIWASMLKAC 601 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 601 (668)
.+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|...|++. ... .+...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4555566677778888888877777632 44 5667777777888888888888888776 222 3455677778888
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 602 ETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
...|++++|...++++++..|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8888999999999998888888776654433
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=7.5e-06 Score=72.68 Aligned_cols=152 Identities=14% Similarity=-0.015 Sum_probs=100.2
Q ss_pred hcCChHHHHH---HhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHH
Q 005943 469 KCGEIDDGLA---LFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS----RLKPN-EITFLGVLSACRHAGLVE 540 (668)
Q Consensus 469 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~ 540 (668)
..|++++|.+ .+..-.......+..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 544322234556777777777788888888887776652 22222 235777777888888888
Q ss_pred HHHHHHHhcccccCCCC-C----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCCH
Q 005943 541 EAWTIFTSMKPEYGLEP-H----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTIWASMLKACETHNNT 607 (668)
Q Consensus 541 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~ 607 (668)
+|...+++......-.+ + ...+..+...+...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877664311122 1 3457778888888899988888887651 1122 22456677778889999
Q ss_pred HHHHHHHHHHHhc
Q 005943 608 KLVSIIAEQLLAT 620 (668)
Q Consensus 608 ~~a~~~~~~~~~~ 620 (668)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988774
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=1.3e-05 Score=68.44 Aligned_cols=128 Identities=14% Similarity=0.000 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDL 568 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 568 (668)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667778888888999999888888752 335667888888888899999999998888743 23357788888889
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhhCCHHHHHHHHHHHHh
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWAS--MLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
+...|++++|.+.++++ ...| +...+.. ....+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998877 2233 4444433 33336778899999988887765
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=6.1e-06 Score=70.41 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 567 (668)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++.... .| +...|..+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 345555555555666666666666555531 223445555555555666666666665555522 33 3455555555
Q ss_pred HhhhcCChHHHHHHHHhC
Q 005943 568 LLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~ 585 (668)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666555554
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=9.3e-07 Score=70.52 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHhcccccCC-CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGL-EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVS 611 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 611 (668)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|.+.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665521 10 12 2445555555555666666666655555 1122 3445555555555556666666
Q ss_pred HHHHHHHhcCCCCchh
Q 005943 612 IIAEQLLATSPEDPSK 627 (668)
Q Consensus 612 ~~~~~~~~~~p~~~~~ 627 (668)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 6666665555555443
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.24 E-value=4.2e-06 Score=68.92 Aligned_cols=64 Identities=13% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLAT-------SPEDPSKY----VMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..+++..+..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 7778888888888888888888888888 89888888 8889999999999999999888876543
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=6.3e-06 Score=66.94 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF----KPD----KTIW 594 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 594 (668)
..+..+...+...|++++|...+++.... .+.+...+..+..+|...|++++|...++++ .. .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666777778888888888888887743 2335667777778888888888888877766 11 122 5566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
..+...+...|++++|...++++.+..| ++.....+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7777777788888888888888887776 776666666655443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=7.3e-06 Score=67.35 Aligned_cols=112 Identities=6% Similarity=-0.163 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 598 (668)
+...+..+...+...|++++|...|++.... .| +...+..+..++...|++++|...+++. .. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556666666777777777777777776632 33 4566777777777777777777777766 22 23566777777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPE-----DPSKYVMLSNVYA 636 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 636 (668)
.++...|++++|...++++.+..|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887766 4555555554433
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=5.6e-06 Score=70.49 Aligned_cols=111 Identities=13% Similarity=0.000 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccC------C---------CC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG------L---------EP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-P 586 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 586 (668)
..+......+.+.|++++|...|++...... - .| +...|..+..+|.+.|++++|+..+++. .
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3566667777778888888887777763200 0 11 1345555666666666666666666555 2
Q ss_pred CC-CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 005943 587 FK-PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP-SKYVMLSNV 634 (668)
Q Consensus 587 ~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 634 (668)
.. .+...|..+..++...|++++|...++++++++|+++ .+...+..+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 22 2455555566666666666666666666666666655 333344333
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=5.6e-06 Score=84.30 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=93.4
Q ss_pred HHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN 606 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 606 (668)
...+.+.|++++|.+.+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34456778888888888887743 44 4778888888888888888888888877 3334 57788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCChhhHHHHHH
Q 005943 607 TKLVSIIAEQLLATSPEDPSKYVMLSNV--YATLGMWDSLSKVRK 649 (668)
Q Consensus 607 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 649 (668)
+++|.+.++++++..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998888 888999999999988
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.00055 Score=64.99 Aligned_cols=171 Identities=9% Similarity=0.009 Sum_probs=96.0
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-ChH
Q 005943 398 TKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKC-G-EID 474 (668)
Q Consensus 398 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 474 (668)
.+.+..++|++++++++..+. -+...|+.--..+...+ .++++...++.+.... +-+..+++.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678888887776542 12233443333444445 4677777777666554 34555555555455444 5 677
Q ss_pred HHHHHhccCCCC---CHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-----
Q 005943 475 DGLALFKFMPER---DVVSWTGIIVGCGQNGRAK--------EAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL----- 538 (668)
Q Consensus 475 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 538 (668)
+++++++.+.+. |...|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777776653 4445554444444444444 7777777777753 3355566666666666554
Q ss_pred --HHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCC
Q 005943 539 --VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGC 574 (668)
Q Consensus 539 --~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 574 (668)
++++++.++++.. ..| |...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 4666666666653 244 45556555555555544
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=7.5e-06 Score=83.01 Aligned_cols=159 Identities=8% Similarity=-0.018 Sum_probs=102.1
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFT 547 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 547 (668)
+++++|...|+.... | ....|..+...+.+.|++++|+..|++.++. .|+...+ . .+...+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH
Confidence 344445444443332 1 2345666666777777777777777776663 2221100 0 000000 00
Q ss_pred hcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 005943 548 SMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 548 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 625 (668)
. .....|..+..+|.+.|++++|+..++++ .. +.+...|..+..++...|++++|+..|+++++++|.+.
T Consensus 314 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 S--------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 01356777888888888888888888877 22 34677888888899999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCChhhHHHH-HHHH
Q 005943 626 SKYVMLSNVYATLGMWDSLSKV-RKAG 651 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~-~~~~ 651 (668)
.++..++.++...|+++++.+. ++.|
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643 4444
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.14 E-value=7.5e-05 Score=70.89 Aligned_cols=229 Identities=11% Similarity=0.072 Sum_probs=159.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHh
Q 005943 402 LNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG-EIDDGLALF 480 (668)
Q Consensus 402 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~ 480 (668)
++..+...++.+...+ +..++|..+.+.+.... +-+..+++.--..+...| .++++++++
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3455666666665543 34467888888887775 445556666666667777 599999999
Q ss_pred ccCCC---CCHhHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--------HHHHHHH
Q 005943 481 KFMPE---RDVVSWTGIIVGCGQN-G-RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVE--------EAWTIFT 547 (668)
Q Consensus 481 ~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~ 547 (668)
+.+.. .+...|+.-...+.+. + ++++++++++++.+.. +-|...|+.....+.+.|.++ ++++.++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 98874 3556777666666665 6 8999999999999853 335667776666665555555 8999999
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhcCC-------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCH----------
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQAGC-------FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNT---------- 607 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~---------- 607 (668)
++... .| |...|+....++.+.+. ++++++.++++ ...| |...|+-+-..+.+.|..
T Consensus 192 k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 88853 45 67888888888888876 68888888777 3344 677787777666666553
Q ss_pred ----------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 608 ----------KLVSIIAEQLLATS------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 608 ----------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
....+....+.... +.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22333333333322 46677888999999999999999999999864
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=2.4e-06 Score=75.71 Aligned_cols=121 Identities=8% Similarity=-0.033 Sum_probs=86.8
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-C----------------HHHHH
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-D----------------KTIWA 595 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 595 (668)
...|+++.+.+.++..... .......+..+...+.+.|++++|.+.|++. ...| + ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555544433211 1112445666677777777777777777765 1111 1 26788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 596 SMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 596 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.+..++.+.|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8888899999999999999999999999999999999999999999999999999987765
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=3.8e-06 Score=81.37 Aligned_cols=149 Identities=9% Similarity=-0.051 Sum_probs=83.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445677777888889999999999988873 455432 233444444433221 137788889
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHhcCChhhH
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNV-YATLGMWDSL 644 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a 644 (668)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|++++++.|.++.++..+..+ ....+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 3334 677888899999999999999999999999999999999888887 4456778888
Q ss_pred HHHHHHHHhcCC
Q 005943 645 SKVRKAGKKLGE 656 (668)
Q Consensus 645 ~~~~~~~~~~~~ 656 (668)
...++.+.+..+
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 889988877666
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.12 E-value=2.6e-05 Score=63.11 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=63.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-PFKPD-K---TIWASMLKACETHNNTKLVSIIAEQLLATSPED---PSKYVMLSNV 634 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 634 (668)
..+...+...|++++|.+.|+++ ...|+ . ..+..+..++.+.|++++|...++++.+..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556666777777777777765 22232 2 355666666777777777777777777777777 5667777777
Q ss_pred HHhcCChhhHHHHHHHHHhcCC
Q 005943 635 YATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 635 ~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
|...|++++|...++.+.+..+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 7777777777777777766544
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=8.1e-06 Score=66.27 Aligned_cols=95 Identities=6% Similarity=-0.050 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCC-CCC----hhHHHH
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGL-EPH----LEHYYC 564 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~----~~~~~~ 564 (668)
.+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++......- .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555555666666666666555532 223445555555555566666666665555432100 111 445555
Q ss_pred HHHHhhhcCChHHHHHHHHhC
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~ 585 (668)
+..+|...|++++|.+.++++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 555566666666666665554
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.08 E-value=2.1e-05 Score=73.90 Aligned_cols=108 Identities=6% Similarity=-0.168 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005943 522 NEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASML 598 (668)
Q Consensus 522 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 598 (668)
+...+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|.+.++++ ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456667777778888888888888877743 44 5677777888888888888888888776 3344 566777777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
.++...|++++|...++++.++.|+++..+...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence 7788888888888888888887776654443333
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.08 E-value=1.7e-05 Score=62.23 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP---DKTIWASMLKA 600 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 600 (668)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666665532 1223455666666666666666666666655 2223 45666667777
Q ss_pred HHhh-CCHHHHHHHHHHHHhcCCCCc
Q 005943 601 CETH-NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 601 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 625 (668)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 777777777777777777653
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.00028 Score=66.72 Aligned_cols=179 Identities=10% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHHHhccCCC---CCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-HHHHHHHHH
Q 005943 474 DDGLALFKFMPE---RDVVSWTGIIVGCGQNG--RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGL-VEEAWTIFT 547 (668)
Q Consensus 474 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~ 547 (668)
++++.+++.+.. .+..+|+.-...+...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 23444554444444444 3666777777766642 2344555555555555565 466666666
Q ss_pred hcccccCCCC-ChhHHHHHHHHhhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh------
Q 005943 548 SMKPEYGLEP-HLEHYYCMVDLLGQA--------------GCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH------ 604 (668)
Q Consensus 548 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 604 (668)
.+... .| |...|+....++.+. +.++++++.++++ ...| |...|+-+-..+.+.
T Consensus 170 ~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 66632 33 455555555444443 3466777777666 2233 555665444444433
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HhcCChhhHHHHHHHHHhcCC
Q 005943 605 -----NNTKLVSIIAEQLLATSPEDPSKYVMLSNVY---ATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 605 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.++++++.++++++..|++..++..++... ...|..+++...+.++.+..+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4577888888888888888866655554432 245777788888888877655
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=1.1e-05 Score=68.28 Aligned_cols=129 Identities=13% Similarity=-0.000 Sum_probs=79.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHH
Q 005943 526 FLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPD----KTI 593 (668)
Q Consensus 526 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 593 (668)
+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544421000011 1355566666666777777666666541 1111 335
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLATSP------EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+..+...+...|++++|...++++.+..+ ....++..++.++...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66667777888888888888888876421 12456778889999999999999998887653
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.06 E-value=1.5e-05 Score=77.94 Aligned_cols=137 Identities=12% Similarity=0.011 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHH
Q 005943 489 VSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVD 567 (668)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 567 (668)
..+..+...+.+.|++++|+..|++.++. .|... .... .++.. ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34666677777777788887777777652 11100 0000 11111 1223 3677888999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 568 LLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 568 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
+|.+.|++++|++.++++ ...| +...|..+..++...|++++|...+++++++.|++..++..+..++...++++++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67788889999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 005943 646 KV 647 (668)
Q Consensus 646 ~~ 647 (668)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=1.8e-05 Score=63.99 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPN-EITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555555555555555553 232 3345555555555555555555555544
No 180
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.05 E-value=2.6e-05 Score=75.40 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=83.4
Q ss_pred cchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----------------HhHHHHHHHH
Q 005943 436 ASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPE--RD----------------VVSWTGIIVG 497 (668)
Q Consensus 436 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~ 497 (668)
+++++|...++...+.. +.....+..+...|.+.|++++|+..|++... |+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443322221 22466788889999999999999999987653 32 3556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFD 576 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 576 (668)
|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++..+ +.| +...+..+..++.+.|+.+
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666642 22344566666666666666666666666653 233 3445555555555555555
Q ss_pred HH
Q 005943 577 DA 578 (668)
Q Consensus 577 ~A 578 (668)
+|
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=3.8e-05 Score=77.57 Aligned_cols=163 Identities=7% Similarity=-0.135 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhhcCCCHHHHHHHHHhcccc---cCCCCC-hhH
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNE----ITFLGVLSACRHAGLVEEAWTIFTSMKPE---YGLEPH-LEH 561 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 561 (668)
+..+...|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777766655421 11111 12233333445566777777666655421 122222 445
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----C---CCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCC----ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEM----P---FKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATS---PED----PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 626 (668)
+..++..|...|++++|..+++++ . .+| ....+..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777655 1 112 23356666677777777777777777776632 222 23
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777777666543
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=8.1e-06 Score=64.93 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=60.9
Q ss_pred hcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHH
Q 005943 571 QAGCFDDAEQLIAEM-PF---KP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLS 645 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 645 (668)
..|++++|+..|++. .. .| +...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777787777776 33 23 34466677777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC
Q 005943 646 KVRKAGKKLGE 656 (668)
Q Consensus 646 ~~~~~~~~~~~ 656 (668)
..+++..+..+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88877766544
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.7e-06 Score=66.13 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHH
Q 005943 558 HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPED------PSKYV 629 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 629 (668)
+...+..+...+.+.|++++|.+.+++. .. +.+...+..+..++.+.|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888899999999988877 22 3467788888889999999999999999999999998 77888
Q ss_pred HHHHHHHhcCChhhHHHHHHH
Q 005943 630 MLSNVYATLGMWDSLSKVRKA 650 (668)
Q Consensus 630 ~l~~~~~~~g~~~~a~~~~~~ 650 (668)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888766543
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=1.7e-05 Score=67.35 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
.|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 344444445555555555555555555555555555555555555555555555555544443
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.96 E-value=2.8e-05 Score=62.15 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETH 604 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 604 (668)
.+...+.+.|++++|...+++..+. .| +...|..+..++...|++++|+..+++. ...| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666666666666666632 34 4556666666666667777776666665 2233 455666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 005943 605 NNTKLVSIIAEQLLATSPEDP 625 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~ 625 (668)
|++++|...++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777777777776643
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00018 Score=74.53 Aligned_cols=169 Identities=8% Similarity=-0.018 Sum_probs=132.6
Q ss_pred CChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 005943 471 GEIDDGLALFKFMPE--R-DVVSWTGIIVGCGQNGR----------AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAG 537 (668)
Q Consensus 471 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 537 (668)
...++|++.++++.. | +...|+.--.++...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 344677777777764 3 34566665555655666 899999999999853 335668888888888888
Q ss_pred --CHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh-------
Q 005943 538 --LVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAG-CFDDAEQLIAEM-PFKP-DKTIWASMLKACETH------- 604 (668)
Q Consensus 538 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 604 (668)
+++++++.++++.+. .| +.+.|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999853 55 6788888888888888 899999999888 4444 677888777776552
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhh
Q 005943 605 -------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDS 643 (668)
Q Consensus 605 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 643 (668)
+.++++.+.+++++..+|++.++|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.91 E-value=0.0009 Score=63.22 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=126.7
Q ss_pred hHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 005943 438 LRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCG--EIDDGLALFKFMPE---RDVVSWTGIIVGCGQNGR-AKEAIAYF 511 (668)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 511 (668)
++++..+++.+.... +-+..+++.-.-.+.+.+ .+++++.+++.+.+ .|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666554 445666665555566666 37888888887764 456677766666677777 58899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcC--------------CCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhc----
Q 005943 512 QEMIQSRLKPNEITFLGVLSACRHA--------------GLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQA---- 572 (668)
Q Consensus 512 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 572 (668)
+++++.. +-|...|+.....+... +.++++++.+..... ..| |...|+-+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 8888853 33445555554444332 447788888888773 356 566666554455444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 005943 573 -------GCFDDAEQLIAEM-PFKPDKTIWASMLKA-----CETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVY 635 (668)
Q Consensus 573 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 635 (668)
+.++++++.++++ ...||. .|..+..+ ....+..++....+.++.+++|....-|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4577888888877 455654 34332222 22467888999999999999999988888776544
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=6.1e-05 Score=57.65 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+...+..+...+...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677778888888888888888888888888888888888888888888888888888877654
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00014 Score=73.43 Aligned_cols=160 Identities=10% Similarity=-0.008 Sum_probs=119.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC
Q 005943 495 IVGCGQNGRAKEAIAYFQEMIQSRLKPN----------------EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH 558 (668)
Q Consensus 495 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 558 (668)
...+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456777888999988888887421111 124778889999999999999999988754332222
Q ss_pred h----hHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------
Q 005943 559 L----EHYYCMVDLLGQAGCFDDAEQLIAEM-------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLAT------ 620 (668)
Q Consensus 559 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 620 (668)
. .+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667788999999888765 22232 457778888999999999999999998873
Q ss_pred CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 621 SPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 621 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
.|....++..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2233567889999999999999999999988764
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=4.2e-05 Score=77.18 Aligned_cols=123 Identities=11% Similarity=0.060 Sum_probs=88.9
Q ss_pred hhcCCCHHHHHHHHHhcccccC--CC---C-ChhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005943 533 CRHAGLVEEAWTIFTSMKPEYG--LE---P-HLEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPD-KTIWAS 596 (668)
Q Consensus 533 ~~~~g~~~~a~~~~~~~~~~~~--~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 596 (668)
+...|++++|+.++++...... +. | ...+++.|..+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456777777666655543211 11 2 2457778888888888888888777765 23344 336788
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 005943 597 MLKACETHNNTKLVSIIAEQLLA-----TSPEDPSK---YVMLSNVYATLGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 655 (668)
+...|...|++++|+.+++++++ +.|+.|.+ ...+..++.+.|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999887 45665544 4578888889999999999999998754
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=3.9e-05 Score=74.21 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 457 DITLTSLIDMYLKCGEIDDGLALFKFMPE--RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 457 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
...+..+...+.+.|++++|...|++... |+... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788889999999999999987653 32221 222333333332221 136777788888
Q ss_pred cCCCHHHHHHHHHhcccccCCCC-ChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhhCCHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDK-TIWASMLKA-CETHNNTKLV 610 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~~~~~~a 610 (668)
+.|++++|+..+++.... .| +...|..+..+|...|++++|...|+++ ...|+. ..+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999998888888742 45 5778888888888999999999988887 445543 344444443 2345677788
Q ss_pred HHHHHHHHhcCCCCc
Q 005943 611 SIIAEQLLATSPEDP 625 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~ 625 (668)
...|++++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888998888887764
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=7.1e-05 Score=63.22 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC----hh
Q 005943 490 SWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK-PN----EITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH----LE 560 (668)
Q Consensus 490 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 560 (668)
++..+...+...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666666666666666665542100 11 125666666777777777777777766532111111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEMP----FKP----DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
.+..+..++...|++++|.+.+++.- ... ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56677777778888888877776651 111 13356667777888899999999998887743
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=2.1e-05 Score=64.83 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 005943 561 HYYCMVDLLGQAGCFDDAEQLIAEM-PF-------KPD-KTIW----ASMLKACETHNNTKLVSIIAEQLLATSPEDPSK 627 (668)
Q Consensus 561 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 627 (668)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666666777777777766666554 23 664 4567 888889999999999999999999999998777
Q ss_pred HHHHHHH
Q 005943 628 YVMLSNV 634 (668)
Q Consensus 628 ~~~l~~~ 634 (668)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00011 Score=54.81 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYA 636 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 636 (668)
...+..+...+...|++++|...+++. .. +.+...+..+...+.+.|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888877766 22 2356677778888888888888888888888888888888888888877
Q ss_pred hcC
Q 005943 637 TLG 639 (668)
Q Consensus 637 ~~g 639 (668)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=7.3e-05 Score=59.02 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 559 LEHYYCMVDLLGQAGCFDDAEQLIAEM-PF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 559 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
...+..+..+|...|++++|...+++. .. +.+...|..+..++...|++++|...++++.+..|
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 445555555555555555555555544 11 22344455555555555555555555555555444
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.73 E-value=8.9e-05 Score=72.50 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005943 524 ITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKP-DKTIWASMLKACE 602 (668)
Q Consensus 524 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 602 (668)
..+..+...+.+.|++++|...|++..+. .+... .....+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888877777631 11000 000111111 1122 4567888888999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 603 THNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+.|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988765
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=8e-05 Score=75.43 Aligned_cols=66 Identities=3% Similarity=-0.051 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 591 KTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 591 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
...|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..++++.+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467888889999999999999999999999999999999999999999999999999999988766
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=3.5e-05 Score=63.34 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 005943 571 QAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNN----------TKLVSIIAEQLLATSPEDPSKYVMLSNVYATL 638 (668)
Q Consensus 571 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 638 (668)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445567777777665 2233 56666666666666655 56999999999999999999999999999987
Q ss_pred C-----------ChhhHHHHHHHHHhcCC
Q 005943 639 G-----------MWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 g-----------~~~~a~~~~~~~~~~~~ 656 (668)
| ++++|++.+++..+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 89999999999988776
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.68 E-value=0.00027 Score=52.75 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 005943 588 KPDKTIWASMLKACETHNN---TKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEKK 658 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 658 (668)
+++...+..+..++...++ .++|..+++++++.+|+++.++..++..+.+.|++++|+.+++++.+..+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566777777777654444 7899999999999999999999999999999999999999999998876643
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.64 E-value=5.9e-05 Score=76.73 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=84.3
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 005943 563 YCMVDLLGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGM 640 (668)
Q Consensus 563 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 640 (668)
..+...+.+.|++++|.+.++++ ...| +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|.+.|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34455678899999999999987 3344 578899999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCC
Q 005943 641 WDSLSKVRKAGKKLGE 656 (668)
Q Consensus 641 ~~~a~~~~~~~~~~~~ 656 (668)
+++|.+.+++..+..+
T Consensus 90 ~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 90 FRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999988766
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00019 Score=55.98 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34567888888999999999999999999999999999999999999999999999999999988766
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.00042 Score=56.61 Aligned_cols=88 Identities=8% Similarity=-0.078 Sum_probs=43.2
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----
Q 005943 566 VDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYAT---- 637 (668)
Q Consensus 566 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 637 (668)
...|...+..++|.+.|++.-...+...+..+...|.. .+++++|...|+++.+. .++.....|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333344444444433212234444444444444 45555555555555544 334555566666655
Q ss_pred cCChhhHHHHHHHHHhcC
Q 005943 638 LGMWDSLSKVRKAGKKLG 655 (668)
Q Consensus 638 ~g~~~~a~~~~~~~~~~~ 655 (668)
.+++++|.+++++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 556666666666555544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00039 Score=51.72 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3456777888899999999999999999999999999999999999999999999999999988765
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=0.0022 Score=66.35 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=123.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC----------HHHHHHHHHhcccccCCCC-ChhHHHHHHHHh
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGL----------VEEAWTIFTSMKPEYGLEP-HLEHYYCMVDLL 569 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 569 (668)
...++|++.++++.+. .|+. ..|+.--.++...|+ ++++++.++.+... .| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3456889999999984 5654 457766666666666 89999999999853 45 678888888888
Q ss_pred hhcC--ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc------
Q 005943 570 GQAG--CFDDAEQLIAEM-P-FKPDKTIWASMLKACETHN-NTKLVSIIAEQLLATSPEDPSKYVMLSNVYATL------ 638 (668)
Q Consensus 570 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 638 (668)
.+.| +++++++.++++ . .+.+...|+.-..++.+.| .++++.+.++++++.+|.+.++|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 679999999998 3 3457888888888888888 899999999999999999999999999998874
Q ss_pred --------CChhhHHHHHHHHHhcCC
Q 005943 639 --------GMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 639 --------g~~~~a~~~~~~~~~~~~ 656 (668)
+.++++.++++......+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988887766
No 205
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.38 E-value=0.014 Score=45.13 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=107.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD 577 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 577 (668)
+.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888999999888773 35566777776666666767777777777643332 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
...-+-.+. .+...+...+..+...|+-+.-.+++..++...|.++..+..++.+|.+.|+..+|.+++++.-++|+|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666665654 345566778888899999999999999987788888999999999999999999999999999999984
Q ss_pred C
Q 005943 658 K 658 (668)
Q Consensus 658 ~ 658 (668)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.00053 Score=53.90 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=50.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 578 AEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 578 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
|++.+++. ...| +...+..+...+...|++++|...++++++.+|.+...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444 2223 45566666666777777777777777777777777777777777777777777777777766543
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.25 E-value=0.00099 Score=50.55 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCh
Q 005943 565 MVDLLGQAGCFDDAEQLIAEM-PFKP-DKT-IWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMW 641 (668)
Q Consensus 565 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 641 (668)
....+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|...|+++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456778889999999998877 3334 556 77888888888999999999999999999988877632 444
Q ss_pred hhHHHHHHHH
Q 005943 642 DSLSKVRKAG 651 (668)
Q Consensus 642 ~~a~~~~~~~ 651 (668)
+++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.22 E-value=4.5e-05 Score=73.38 Aligned_cols=117 Identities=14% Similarity=-0.019 Sum_probs=67.0
Q ss_pred chhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005943 246 SCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 325 (668)
++.+|..+-.+|...+.+.-|.-.--.+. ..|| ....++..|-..|.+++.+.+++.-... -......|+.|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 66777777777888877776665543332 3333 2244566677888888888888876532 23456667766
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCC----------ccchHHHHHHHHHhcCChHHHH
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYEL----------DYIVGSNLIDLYARLGNVKSAL 376 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~ 376 (668)
.-.|++-.-- . +.+.++-..-+. ....|.-++-.|.+-.+++.|.
T Consensus 270 aILYsKY~Pe---K---lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKFKPQ---K---MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSSCTT---H---HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCHH---H---HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666664332 1 222221111111 2345666666666666666654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.00043 Score=52.64 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPS-KYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..+.+.|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445556666666666666666666666 666666666666666666666666655544
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.00086 Score=67.66 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=71.2
Q ss_pred HHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhH
Q 005943 567 DLLGQAGCFDDAEQLIAEM---------PFKPD-KTIWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKY 628 (668)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~ 628 (668)
..+...|++++|..++++. +..|+ ..+++.+..+|...|++++|..+++++++ +.|+. ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999988765 12333 34788999999999999999999999987 34444 4568
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 629 VMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 629 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
..|+.+|..+|++++|..++++..+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999988753
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.09 E-value=0.0071 Score=49.17 Aligned_cols=112 Identities=10% Similarity=-0.056 Sum_probs=91.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhh----cCChHH
Q 005943 502 GRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQ----AGCFDD 577 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 577 (668)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++.... -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999987 44444 667778888899999999998753 456778888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCC
Q 005943 578 AEQLIAEMPFKPDKTIWASMLKACET----HNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 578 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 622 (668)
|.+.|++.-..-+...+..+...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434577788888888888 7899999999999988643
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.04 E-value=0.0004 Score=57.02 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChh
Q 005943 576 DDAEQLIAEM-PFKP-DKTIWASMLKACETH-----------NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWD 642 (668)
Q Consensus 576 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 642 (668)
++|+..|++. ...| +...|..+..+|... |++++|++.|+++++++|++......+ ...+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-------~~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-------EMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHH
Confidence 3555555544 2223 344555555555544 689999999999999999975332222 2345
Q ss_pred hHHHHHHHHHhcC
Q 005943 643 SLSKVRKAGKKLG 655 (668)
Q Consensus 643 ~a~~~~~~~~~~~ 655 (668)
+|.++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5555555554443
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.04 E-value=0.022 Score=51.62 Aligned_cols=86 Identities=8% Similarity=0.137 Sum_probs=68.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----hCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CChhh
Q 005943 575 FDDAEQLIAEM-PFKPD---KTIWASMLKACET-----HNNTKLVSIIAEQLLATSPED-PSKYVMLSNVYATL-GMWDS 643 (668)
Q Consensus 575 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 643 (668)
..+|...+++. ...|+ ...|..+...|.+ .|+.++|.+.|+++++++|+. ..++..++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44566666655 45565 5577778877877 489999999999999999975 99999999998885 99999
Q ss_pred HHHHHHHHHhcCC-CCCc
Q 005943 644 LSKVRKAGKKLGE-KKAG 660 (668)
Q Consensus 644 a~~~~~~~~~~~~-~~~~ 660 (668)
|.+++++.....+ ..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 9999999988877 4455
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.00098 Score=66.07 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+++.+..+|...|++++|+.+++++++ ..|+. ...+..|+.+|..+|++++|..++++..
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344445555555555555555555444 12222 2234455555555555555555555443
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.99 E-value=0.00077 Score=65.10 Aligned_cols=150 Identities=7% Similarity=0.009 Sum_probs=90.6
Q ss_pred HHHHHHhcCChHHHHHHHccCCCCChhhHH-HHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHh
Q 005943 362 LIDLYARLGNVKSALELFHRLPKKDVVAWS-GLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRR 440 (668)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 440 (668)
.++.+.+.|++......+..+...|....| ++-..|....|++.-... |..|.+-.....
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~S-------------------Id~ydNFD~i~L 444 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS-------------------IDAYDNFDNISL 444 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHT-------------------TSSCCCSCTTHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH-------------------HHHhccccHHHH
Confidence 445566667777777677666666555444 344566666665532211 222233333333
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005943 441 GKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLK 520 (668)
Q Consensus 441 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 520 (668)
|.++ .+ .+-...-..-...|.+.++++++.++..+=. .|.-.|.....+|+.+-|.++++-..+.|
T Consensus 445 A~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g-- 510 (624)
T 3lvg_A 445 AQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE-- 510 (624)
T ss_dssp HHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC--
T ss_pred HHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 3222 11 1122223334566788889999887765432 22224455577889999999999999866
Q ss_pred CCHHHHHHHHHHhhcCCCHHHHHHH
Q 005943 521 PNEITFLGVLSACRHAGLVEEAWTI 545 (668)
Q Consensus 521 p~~~~~~~ll~~~~~~g~~~~a~~~ 545 (668)
+..+|...+-.|...=++|-++++
T Consensus 511 -~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 511 -KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -chHHHHHHHHHHhhccChHHHHHH
Confidence 567788888888888888887765
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.002 Score=64.01 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=58.5
Q ss_pred HHHhhcCCCHHHHHHHHHhccccc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHH
Q 005943 530 LSACRHAGLVEEAWTIFTSMKPEY--GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPD-KTI 593 (668)
Q Consensus 530 l~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 593 (668)
+..+...|++++|+..+++..... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556677777777776665321 12222 345666666777777777776666654 12233 224
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 005943 594 WASMLKACETHNNTKLVSIIAEQLLA-----TSPEDPSKYV 629 (668)
Q Consensus 594 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 629 (668)
++.+...|...|++++|+.+++++++ ..|+.|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 56666667777777777777777776 3455554443
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.0026 Score=48.32 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=37.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcc
Q 005943 488 VVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMK 550 (668)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 550 (668)
...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566666666666666666666666632 1223455666666666666666666666655
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.0015 Score=61.92 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 005943 589 PDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGEK 657 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 657 (668)
.+...|..+...+...|+++.|...+++++.++|. ...|..+++++.-.|++++|.+.+++....++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34555555555555556666666666666666543 445556666666666666666666666555553
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0059 Score=60.47 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=64.5
Q ss_pred cCCCHHHHHHHHHhccccc--CCCCC----hhHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEY--GLEPH----LEHYYCMVDLLGQAGCFDDAEQLIAEM---------PFKPDK-TIWASML 598 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 598 (668)
..|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|..++++. +..|+. .+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777776666554321 12222 466778888888888888888877765 234443 3678888
Q ss_pred HHHHhhCCHHHHHHHHHHHHh-----cCCCCchhH
Q 005943 599 KACETHNNTKLVSIIAEQLLA-----TSPEDPSKY 628 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 628 (668)
..|...|++++|+.+++++++ ..|+.|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 889999999999999999887 456666443
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.71 E-value=0.71 Score=47.79 Aligned_cols=251 Identities=10% Similarity=0.011 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccch
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASL 438 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 438 (668)
-+..+..+.+.+++......+.. ...+...-.....+....|+...|....+++-..| ...+..+..++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34456667778888888887776 33355555566777777888777777666665444 22333444444444433322
Q ss_pred HhH--HHHHHHHHHhC-----------CCCchh-HHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHhc
Q 005943 439 RRG--KQVHAFCVKRG-----------FEKEDI-TLTSLIDMYLKCGEIDDGLALFKFMPERDVV---SWTGIIVGCGQN 501 (668)
Q Consensus 439 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~ 501 (668)
... .+=++.+...| ++++.. ....++..+. ++..+....... .++.. .+...+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence 111 11111111111 111111 1112222211 222222222221 11111 11112222333
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 502 GRAKEAIAYFQEMIQSR-LKPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 502 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
.+.+.|...+......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 36788888887776543 222222 223333344445534555566665432 223433344444445567888888
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 579 EQLIAEMPFKP-D-KTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 579 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
...|+.|+..+ + ..-.--+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888885432 2 22222234456677888888888888765
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.70 E-value=0.012 Score=58.44 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCC---chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA-----TSPED---PSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
+++.+..+|...|++++|+.+++++++ ..|++ ...+..|+.+|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 455555555566666666666665554 12222 3345555566666666666666655554
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.44 E-value=0.073 Score=50.51 Aligned_cols=141 Identities=11% Similarity=-0.070 Sum_probs=90.4
Q ss_pred CHhHHHHHHHHHH--hc---CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh----cCC-C---HHHHHHHHHhcccc
Q 005943 487 DVVSWTGIIVGCG--QN---GRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACR----HAG-L---VEEAWTIFTSMKPE 552 (668)
Q Consensus 487 ~~~~~~~l~~~~~--~~---~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~----~~g-~---~~~a~~~~~~~~~~ 552 (668)
+...|...+++.. .. .+..+|..+|++.++ +.|+- ..|..+..++. ..+ . .......++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555555554432 22 235778888888888 46663 33433333332 111 1 11111122211111
Q ss_pred cCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 553 YGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 553 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..+ +|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 123556888888888888889999999999988 4458887887788888999999999999999999999865 4443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.0099 Score=48.18 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHHH
Q 005943 538 LVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAG---CFDDAEQLIAEM-PFK-P--DKTIWASMLKACETHNNTKLV 610 (668)
Q Consensus 538 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a 610 (668)
....+.+-|.+.... + .++..+...+..++.+.+ +.+++..+|++. ... | +...+-.+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345566666655432 3 367778888888888877 556888888776 222 4 344556666677888888888
Q ss_pred HHHHHHHHhcCCCCchhHHH
Q 005943 611 SIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 611 ~~~~~~~~~~~p~~~~~~~~ 630 (668)
.++++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 88888888888887655443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.35 E-value=0.17 Score=55.45 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=73.1
Q ss_pred HHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccchHhHHHH
Q 005943 365 LYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLASLRRGKQV 444 (668)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 444 (668)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.+ |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456799999999887764 567899999999999999999999988742 22333333345555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 005943 445 HAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQE 513 (668)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 513 (668)
.+.....| -++....+|.+.|++++|++++ .+.+++++|..+-+.
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHH
Confidence 44444433 1233444556666776666654 445566666665443
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.31 E-value=0.13 Score=56.24 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005943 467 YLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMI 515 (668)
Q Consensus 467 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 515 (668)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445677777777766653 45677777777777888887777777654
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.27 E-value=0.031 Score=42.53 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 005943 560 EHYYCMVDLLGQAGCFDDAEQLIAEMP---------FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 560 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 630 (668)
.-...|...+.+.|++..|...|+.+- ..+....+..+..++.+.|+++.|...++++.+..|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555666666666665555440 12346678888889999999999999999999999999877666
Q ss_pred HH
Q 005943 631 LS 632 (668)
Q Consensus 631 l~ 632 (668)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.15 E-value=1.9 Score=46.50 Aligned_cols=266 Identities=9% Similarity=0.011 Sum_probs=136.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCC---HHH--HHHH
Q 005943 253 LVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGM--CID---SYT--FTSA 325 (668)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~---~~t--~~~l 325 (668)
..-+....|+.+++..+++.......+..+.+..-..+.-+.+..|..+++..++.......- .-+ ... -..+
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 344566778888888888776321000111122223334456667766678887777654321 011 111 1112
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCccchHH--HHHHHHHhcCChHHHHHHHccCCC-CChhh--HHHHHHHHHhc
Q 005943 326 LKACINLLNFNSRFALQVHGLIVTSGYELDYIVGS--NLIDLYARLGNVKSALELFHRLPK-KDVVA--WSGLIMGCTKH 400 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~ 400 (668)
--+++-.|..+ +.+...+..+....-. ...... ++...+...|+.+....++..+.+ .+... .-.+.-++...
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 12222233322 3444444444432211 111111 233334455776666666665432 22222 23333445577
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHH--HHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005943 401 GLNSLAYLLFRDMINSNQDVNQFII--SSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLA 478 (668)
Q Consensus 401 ~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 478 (668)
|+.+.+..+++.+.... .|....- .++..+|+..|+......++..+.... ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888877532 2222222 234457888999988888998887653 2233333333344555677777788
Q ss_pred HhccCCC-CCHhHHH--HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHH
Q 005943 479 LFKFMPE-RDVVSWT--GIIVGCGQNGRA-KEAIAYFQEMIQSRLKPNEIT 525 (668)
Q Consensus 479 ~~~~~~~-~~~~~~~--~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~ 525 (668)
+++.+.+ .|...-. .+.-+....|.. .+++.++..+.. .++..+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 8775543 3433322 333334444433 678888888874 455543
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.95 E-value=0.061 Score=39.80 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 556 EPHLEHYYCMVDLLGQAGC---FDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|+..|+++++..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3466777777777764444 68888888877 3334 56677777788889999999999999999988884
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.87 E-value=0.026 Score=45.72 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 589 PDKTIWASMLKACETHN---NTKLVSIIAEQLLATS-P-EDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 589 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|+.+|.+.|++++|+++++.+.+..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 45555555555555555 4446666666666655 4 3355566666666666666666666666655444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.045 Score=41.63 Aligned_cols=67 Identities=18% Similarity=-0.002 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATS-------PEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
+......+...+.+.+++..|...++.+.+.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44556678888999999999999999998842 33467899999999999999999999999987766
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.21 E-value=1.1 Score=37.36 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=49.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHH
Q 005943 499 GQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 499 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 578 (668)
.+.|+++.|.++.+++ .+...|..+.......|+++-|.+.|++... +..+.-.|...|+.++-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3455566665555443 2345566666666666666666666665541 33344444455555444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 005943 579 EQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQ 616 (668)
Q Consensus 579 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 616 (668)
.++-+....+-+ ++.....+.-.|+++++.+++.+
T Consensus 80 ~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 433332211111 33333444455666666665544
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.94 E-value=0.17 Score=40.40 Aligned_cols=50 Identities=4% Similarity=-0.108 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+|.++|.++|+.+++....-..+|...+..-.+.|+.+.|++++.+....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44444444444444433222334444444444445555554444444443
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.065 Score=56.44 Aligned_cols=53 Identities=4% Similarity=-0.070 Sum_probs=49.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 599 KACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 599 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
.-|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+|+.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33667899999999999999999999999999999999999999999999987
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.59 E-value=0.04 Score=49.96 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhhc-----CChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-hCCHHHHHHHHHHHHhcCCC
Q 005943 560 EHYYCMVDLLGQA-----GCFDDAEQLIAEM-PFKPD--KTIWASMLKACET-HNNTKLVSIIAEQLLATSPE 623 (668)
Q Consensus 560 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~p~ 623 (668)
..|..+...|.+. |+.++|.+.|++. .+.|+ ..++......+++ .|+.+.+.+.++++++..|.
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3555555555553 6666666666655 33442 4445555555555 36666666666666665544
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.38 E-value=1.9 Score=35.87 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
+...|..|.+...+.|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++-+.....| -++....++..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~ 101 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFY 101 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHH
Confidence 344555555555566666666555555443 2333333444444444443333333322 12223333344
Q ss_pred CCCHHHHHHHHHhc
Q 005943 536 AGLVEEAWTIFTSM 549 (668)
Q Consensus 536 ~g~~~~a~~~~~~~ 549 (668)
.|+++++.++|.+.
T Consensus 102 lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 102 NNSTKERSSIFAEG 115 (177)
T ss_dssp HTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHC
Confidence 55555555555443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.07 E-value=0.16 Score=39.49 Aligned_cols=92 Identities=15% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhhCCHHH
Q 005943 537 GLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDD---AEQLIAEM-PFK-P--DKTIWASMLKACETHNNTKL 609 (668)
Q Consensus 537 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 609 (668)
.....+.+-|.+.... + .|+..+-..+..++.+..+..+ ++.++++. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555432 3 3777777778888888876665 77777776 222 3 22334455566888888999
Q ss_pred HHHHHHHHHhcCCCCchhHHH
Q 005943 610 VSIIAEQLLATSPEDPSKYVM 630 (668)
Q Consensus 610 a~~~~~~~~~~~p~~~~~~~~ 630 (668)
|.+.++.+++.+|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 998888888888888665543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.76 E-value=0.39 Score=37.34 Aligned_cols=79 Identities=8% Similarity=0.042 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH---HHHHHHhcccccCCCC--ChhHHHHHHHHhhhcCChHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEE---AWTIFTSMKPEYGLEP--HLEHYYCMVDLLGQAGCFDDA 578 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 578 (668)
...+.+-|.+....|. |+..+--.+..++.+...... ++.+++.+.+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444433332 444443344444555444333 55555555432 1 12 233333444455555555555
Q ss_pred HHHHHhC
Q 005943 579 EQLIAEM 585 (668)
Q Consensus 579 ~~~~~~~ 585 (668)
.++++.+
T Consensus 94 ~~~~~~l 100 (126)
T 1nzn_A 94 LKYVRGL 100 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.28 E-value=4 Score=40.42 Aligned_cols=170 Identities=9% Similarity=0.029 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccC----CCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhc
Q 005943 204 LTSLIDMYLKCGEIDDGLALFNFMP----ERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAAS 279 (668)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 279 (668)
...|...+...|++.+|..++..+. ....... -...+...++.|...+++..|..++.++......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------KIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 3567888999999999999998876 1111110 3567888999999999999999999987432221
Q ss_pred CC--CC--eeeHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHH----HHHhccccchHHHHHHHHHHHHh
Q 005943 280 AY--GN--VALWNSMISGYVLNEQNEEAITLLSHIHSS-GMCIDSYTFTSALK----ACINLLNFNSRFALQVHGLIVTS 350 (668)
Q Consensus 280 ~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~----~~~~~~~~~~~~a~~~~~~~~~~ 350 (668)
.. |+ ...|...+..+...+++.+|...|.+.... ...-|...+..++. +..-.+.. ..-..+.......
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~--~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYG--NLQNDLIHKIQND 287 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCS--STTHHHHHSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHhhc
Confidence 22 22 234566677788899999998888877542 12223332222221 11112211 1122222223333
Q ss_pred CCCCccchHHHHHHHHHhc--CChHHHHHHHccCCCC
Q 005943 351 GYELDYIVGSNLIDLYARL--GNVKSALELFHRLPKK 385 (668)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~ 385 (668)
..-++...+..++.+|... .+++.+.+.|.....+
T Consensus 288 ~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 288 NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 3334566777888888764 4577777777766544
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.41 E-value=3.2 Score=32.47 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 491 WTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 491 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
....+..+...|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.+.-++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344455556666666666666664332 3556666666666666666666666666665543
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.09 E-value=1 Score=36.03 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=33.0
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 005943 573 GCFDDAEQLIAEMP--FKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLS 632 (668)
Q Consensus 573 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 632 (668)
++.++|.++|+.+. -+.=...|.....--.+.|+.+.|.+++.+++...|.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 45555555555440 0011444555555556677777777777777777766554444433
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.51 E-value=2.3 Score=33.66 Aligned_cols=74 Identities=4% Similarity=0.029 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFD---DAEQLIAEM-PFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.|+..+-..+..++.+..+.+ +++.+++++ ...| .....-.+.-++.+.|++++|.++.+.+++.+|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567777777777777777544 566666665 2233 2333444556678888888888888888888888765443
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.64 E-value=12 Score=36.04 Aligned_cols=163 Identities=13% Similarity=0.001 Sum_probs=74.1
Q ss_pred HHHHHHHHHhccccchHhHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCC-hHHHHHHhccCCC---CCHhHH---
Q 005943 423 FIISSVLKVCSCLASLRRGKQVHAFCVKR-GFEK---EDITLTSLIDMYLKCGE-IDDGLALFKFMPE---RDVVSW--- 491 (668)
Q Consensus 423 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~--- 491 (668)
.....+...|.+.|+.++..+++...+.. +..+ .......+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666544322 1111 12234455555544322 2222222222221 011122
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhcCCCHHHHHHHHHhcccccC-CCCChhHH
Q 005943 492 ---TGIIVGCGQNGRAKEAIAYFQEMIQS--RLKPNE---ITFLGVLSACRHAGLVEEAWTIFTSMKPEYG-LEPHLEHY 562 (668)
Q Consensus 492 ---~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~ 562 (668)
..++..|...|++.+|..++.++.+. .+.... ..|..-+..|...+++..+...+.......+ +.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14556666677777776666666553 111111 1344445556666677777666665543211 11222221
Q ss_pred H----HHHHHhh-hcCChHHHHHHHHhC
Q 005943 563 Y----CMVDLLG-QAGCFDDAEQLIAEM 585 (668)
Q Consensus 563 ~----~l~~~~~-~~g~~~~A~~~~~~~ 585 (668)
. .-...+. ..+++.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1 1122333 556666666655443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.62 E-value=0.74 Score=35.93 Aligned_cols=74 Identities=4% Similarity=0.029 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 005943 556 EPHLEHYYCMVDLLGQAGCFD---DAEQLIAEM-PFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYV 629 (668)
Q Consensus 556 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 629 (668)
.|+..+-..+..++.+..+.+ +++.+++++ ...| ....+--+..++.+.|+++.|.++.+.+++..|++..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 466666666777777766543 456666655 2234 2334555666677888888888888888888888765443
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.49 E-value=22 Score=38.51 Aligned_cols=248 Identities=8% Similarity=-0.011 Sum_probs=129.7
Q ss_pred HHHHhcCChHHHHHHHccCCCC----Chhh--HHHHHHHHHhcCCcHHHHHHHHHHHHcCC-------CCcHHHHHHH--
Q 005943 364 DLYARLGNVKSALELFHRLPKK----DVVA--WSGLIMGCTKHGLNSLAYLLFRDMINSNQ-------DVNQFIISSV-- 428 (668)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l-- 428 (668)
-+....|+.++++.++...... +... =..+.-+....|..+++.+++.......- .+....-.++
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888999988876642 2222 22233445566666678887777664321 0111111222
Q ss_pred HHHhccccchHhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHHhccCCC-CCHh--HHHHHHHHHHhcCC
Q 005943 429 LKVCSCLASLRRGKQVHAFCVKRGFEKED--ITLTSLIDMYLKCGEIDDGLALFKFMPE-RDVV--SWTGIIVGCGQNGR 503 (668)
Q Consensus 429 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~ 503 (668)
-.++...++. ++...+..+....- +.. ..--++...|+-.|+.+....++..+.+ .+.. -+-.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233333333 34444444433221 111 1122334445566777777776665432 2222 23334445557788
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEI-TFL---GVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAE 579 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 579 (668)
.+.+..+++.+... .+.. -|. .+.-+|+..|+.....+++..+..+ ...+..-...+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888888763 2332 232 3445778888987777788888742 2223333333444444567777677
Q ss_pred HHHHhCCCCCCHHHH--HHHHHHHHhhCCH-HHHHHHHHHHH
Q 005943 580 QLIAEMPFKPDKTIW--ASMLKACETHNNT-KLVSIIAEQLL 618 (668)
Q Consensus 580 ~~~~~~~~~p~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~ 618 (668)
++++.+....|..+- -.+.-+....|+. .++...+..+.
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 777655322233333 3333334444443 45666666665
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.93 E-value=12 Score=34.60 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=93.3
Q ss_pred HHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeH
Q 005943 208 IDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALW 287 (668)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 287 (668)
+......|++=+|.+.++ ++..-|.+.+++++|.+++..-
T Consensus 20 l~~~I~~G~yYEAhQ~~R--------------------------tl~~Ry~~~~~~~eAidlL~~g-------------- 59 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLR--------------------------TIANRYVRSKSYEHAIELISQG-------------- 59 (312)
T ss_dssp HHHHHHHTCHHHHHHHHH--------------------------HHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred HHHHhhccChHHHHHHHH--------------------------HHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 445566778877776654 5566688889999999887765
Q ss_pred HHHHHHHHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHH----hCC--CCccc
Q 005943 288 NSMISGYVLNEQNEEAITL----LSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVT----SGY--ELDYI 357 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~ 357 (668)
...+.+.|+...|-++ ++...+.+++++......++..+......+ ..-..+...+.+ .|- .-++.
T Consensus 60 ---a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~ 135 (312)
T 2wpv_A 60 ---ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPY 135 (312)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHH
T ss_pred ---HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHH
Confidence 2335667777666554 555667789999888888887776654332 122333334433 222 22667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 005943 358 VGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK 399 (668)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 399 (668)
....+...|.+.+++.+|+.-|-.-...+...+..++.-+..
T Consensus 136 LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 136 LHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 778888888888888888876653322244444444443333
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.39 E-value=11 Score=37.16 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHHh---cCCCC----ch
Q 005943 562 YYCMVDLLGQAGCFDDAEQLIAEMP-----FKPD---KTIWASMLKACETHNNTKLVSIIAEQLLA---TSPED----PS 626 (668)
Q Consensus 562 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~----~~ 626 (668)
...|+..|...|++.+|.+++.++. ..+. ...+...+..|...+++..|..+++++.. ..+.+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456667777777777777776652 1111 22444455556677777777777776543 12222 23
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 627 KYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 627 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
.+...+..+...++|.+|-+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566666677777777776666554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.07 E-value=1.2 Score=43.42 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 595 ASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 595 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
..++.++...|++.++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566667777777777777777777777777777777777777777777766653
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.65 E-value=15 Score=34.15 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhh
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYF----QEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
+|.++..=|.+.+++++|++++.. -...+.+.|+...|-++. +-..+.+++++......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778889999999887542 334456667766655544 55566788888888777777776
Q ss_pred cCCCH--------HHHHHHHHhcccccCC--CCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 005943 535 HAGLV--------EEAWTIFTSMKPEYGL--EPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETH 604 (668)
Q Consensus 535 ~~g~~--------~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 604 (668)
....- .+|+.+-.. .|- .-|+.....+...|.+.|++.+|...|- .+..+....+..++..+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHh
Confidence 65531 233333222 132 2357778889999999999999988883 33334445665555444333
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHhcCChhhHHHHHHHHHh
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYV-MLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
+. |.....|. ..+--|...|+...|...++...+
T Consensus 181 ~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32 22233333 333346778899999887777654
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.79 E-value=3.4 Score=30.28 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=43.3
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 577 DAEQLIAEM---PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 577 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
+..+-++.+ ..-|++....+.+.+|.|.+|+..|.++++.++....+...+|..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444433 467999999999999999999999999999998866555566766553
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.06 E-value=21 Score=40.41 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---------------------
Q 005943 428 VLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPER--------------------- 486 (668)
Q Consensus 428 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------- 486 (668)
++..+...+..+.+.++... ++.++...-.+..+|...|++++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33344444444444443322 2333333344566777788888888888765420
Q ss_pred -----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCC
Q 005943 487 -----DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNE--I--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEP 557 (668)
Q Consensus 487 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 557 (668)
-..-|..++..+-+.+.++.++++-+..++..-.-+. . .|..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 0112445555555666666666665555443111111 1 3455556666666666665555444311 12
Q ss_pred ChhHHHHHHHHhhhcCC
Q 005943 558 HLEHYYCMVDLLGQAGC 574 (668)
Q Consensus 558 ~~~~~~~l~~~~~~~g~ 574 (668)
-......|+..++..|.
T Consensus 970 r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 23444555554544444
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.85 E-value=2.1 Score=35.00 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC-----CCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH-HH
Q 005943 461 TSLIDMYLKCGEIDDGLALFKFMP-----ERDV-------VSWTGIIVGCGQNGRAKEAIAYFQEMIQSR-LKPNEI-TF 526 (668)
Q Consensus 461 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~-~~ 526 (668)
-.-+..+...|.++.|+-+.+.+. ++++ .++..+..++...+++.+|...|++.++.. .-|... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334556666677777766555432 1221 134455566666666777776666654421 111111 11
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 005943 527 LGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFK 588 (668)
Q Consensus 527 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 588 (668)
..+. ....... .....++.+.---+..+|.+.|++++|+.+++.++.+
T Consensus 104 ~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 104 PSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0000 0000000 0012233455555778888888888888888888533
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.52 E-value=2.5 Score=30.94 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 503 RAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 503 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
+.-+..+-+..+....+.|++....+.+++|.+.+++..|.++++-++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456666667777778899999999999999999999999999888754 3344556766654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.28 E-value=5 Score=32.77 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh-------hHHHHHHHHhhhcCChHHHHHHHHhC---
Q 005943 518 RLKPNEI--TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL-------EHYYCMVDLLGQAGCFDDAEQLIAEM--- 585 (668)
Q Consensus 518 g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--- 585 (668)
|+.|... ++.--+..+...|.++.|+-+...+..-.+..|+. .++..+.+++...|++..|...|++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455433 34444556667777777776666544332233332 24555666777777777777776653
Q ss_pred -CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 586 -PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 586 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
..-+ +..+...+. ....... -.. .+.+...-..++..|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1001 100000000 0000000 000 1233456678999999999999999999865
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.22 E-value=22 Score=33.19 Aligned_cols=132 Identities=12% Similarity=0.024 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHH----HHHHhCCCCCCHHHHHHH
Q 005943 250 LSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLL----SHIHSSGMCIDSYTFTSA 325 (668)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~l 325 (668)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...+.++- +...+.++++|..+...+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 335556688899999999887664 23356667766655544 556667888998888888
Q ss_pred HHHHHhccccchHHHHHHHHHHH----HhCC--CCccchHHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHh
Q 005943 326 LKACINLLNFNSRFALQVHGLIV----TSGY--ELDYIVGSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTK 399 (668)
Q Consensus 326 l~~~~~~~~~~~~~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 399 (668)
+..+......+. .-..+.+.+. +.|- .-|+.....+...|.+.+++.+|+.-|-.-.+++...+..++.-+..
T Consensus 101 ~~L~~~~~~~~p-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 101 LGCLRLFQPGEP-VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHHTTSCTTCH-HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCc-HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 887777654321 1223333333 3342 23666777788888888888888887743222223455444443333
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.19 E-value=21 Score=33.00 Aligned_cols=167 Identities=9% Similarity=-0.013 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHHH----HHHHHHHcCCCCcHHHHHHHHHHhcc
Q 005943 359 GSNLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAYL----LFRDMINSNQDVNQFIISSVLKVCSC 434 (668)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll~~~~~ 434 (668)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.+ +++-+.+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566678888888888887533 2344566777665555 45556667899999888888887765
Q ss_pred ccchH-hHHHHHHHHHH----hCC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhc---CCh
Q 005943 435 LASLR-RGKQVHAFCVK----RGF--EKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQN---GRA 504 (668)
Q Consensus 435 ~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 504 (668)
...-+ .-..+.+.+.+ .|- .-++.....+...|.+.|++.+|+.-|-.-...+...+..++.-+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 22334444443 322 235667788888899999999988876532222344444443333322 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc
Q 005943 505 KEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP 551 (668)
Q Consensus 505 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 551 (668)
.++-- ..-..++ .|.-.|+...|..+++...+
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 22111 1111222 34456788888887776653
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.80 E-value=10 Score=30.10 Aligned_cols=69 Identities=7% Similarity=-0.052 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 588 KPDKTIWASMLKACETHNN---TKLVSIIAEQLLATSPE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 588 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
.|+..+--.+..++.+..+ ..+++.+++.+....|. ....+..|+..+.+.|+|++|+++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4555555556666665543 44566677777766663 445666677777777777777777777766554
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.74 E-value=3.4 Score=29.98 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=64.1
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+. ...+--.-+..+..+|++++|..+.+.+.-||...|-.+-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 57888888888887663 22222233455778999999999999999999999887654 577888888888888888
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 97 sg-~-p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-D-PALADFAA 107 (115)
T ss_dssp CS-S-HHHHHHHH
T ss_pred CC-C-HHHHHHHH
Confidence 77 3 55555543
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.71 E-value=2.9 Score=44.21 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=29.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHhc
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNE-ITFLGVLSACRHAGLVEEAWTIFTSM 549 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 549 (668)
+...|+++.|+++-++.... .|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456666666666666553 4443 36666666666666666666655555
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.01 E-value=4.3 Score=39.37 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=46.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhccc----ccCCCCChhHHHH
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKP----EYGLEPHLEHYYC 564 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 564 (668)
.++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ +.|+.|+..+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 35556666777777777777766642 33556777777777777777777777776543 3477776655443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.54 E-value=3.6 Score=32.15 Aligned_cols=44 Identities=9% Similarity=-0.021 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 005943 610 VSIIAEQLLATSPE-DPSKYVMLSNVYATLGMWDSLSKVRKAGKK 653 (668)
Q Consensus 610 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 653 (668)
++.+++.+.+..|. ....+..|+.++.+.|+|++|+++.+.+.+
T Consensus 62 GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 62 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444432 233444444444444444444444444443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.19 E-value=3.7 Score=29.90 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=62.2
Q ss_pred chhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 005943 18 SIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
..++|..+-+.+...+. ...+--.-+..+..+|++++|..+.+.+.-||...|-.+-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 57888888888887663 22222233455778999999999999999999998887654 466777888888878877
Q ss_pred cCCCCCCCchHHH
Q 005943 98 YGSVEPNGFMYSA 110 (668)
Q Consensus 98 ~~~~~p~~~~~~~ 110 (668)
+| . |....|..
T Consensus 98 sg-~-p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-D-PRIQTFVN 108 (116)
T ss_dssp CC-C-HHHHHHHH
T ss_pred CC-C-HHHHHHHH
Confidence 76 3 45444443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.40 E-value=3.7 Score=36.72 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=23.7
Q ss_pred hcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhC
Q 005943 534 RHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 534 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.+.|++++|++....-.+ .-+-|...-..|++.|+-.|++++|.+-++.+
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555554444442 12224444455555555555555555444433
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.05 E-value=3.8 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=27.1
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 005943 569 LGQAGCFDDAEQLIAEM-PFKP-DKTIWASMLKACETHNNTKLVSIIAEQLLATSPED 624 (668)
Q Consensus 569 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 624 (668)
+.+.|++++|++.+..- +..| |...-..++..++-.|+++.|..-++-+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34445555555444333 2223 33344444555555555555555555555555553
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.12 E-value=49 Score=37.45 Aligned_cols=143 Identities=8% Similarity=-0.035 Sum_probs=71.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc
Q 005943 493 GIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA 572 (668)
Q Consensus 493 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 572 (668)
.++..+...+.++.+.++... ++-+...--.+..++...|++++|.+.|++... ++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 355556666666666554432 233444334455567777777777777777643 332221110
Q ss_pred CChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CCCc----hhHHHHHHHHHhcCChhhHHH
Q 005943 573 GCFDDAEQLIAEMPF-KPDKTIWASMLKACETHNNTKLVSIIAEQLLATS-PEDP----SKYVMLSNVYATLGMWDSLSK 646 (668)
Q Consensus 573 g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~a~~ 646 (668)
....+...+...-.. ..-..-|..++..+.+.+.++.+.++.+.+++.. +++. ..|..+.+.+.+.|+|++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 000011111111111 1122345555556666666666666666666533 2222 135556666666677777666
Q ss_pred HHHHHH
Q 005943 647 VRKAGK 652 (668)
Q Consensus 647 ~~~~~~ 652 (668)
.+-.+.
T Consensus 960 aL~~~p 965 (1139)
T 4fhn_B 960 ALMVLS 965 (1139)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 665444
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.99 E-value=5.7 Score=30.91 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHH
Q 005943 504 AKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVD 567 (668)
Q Consensus 504 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 567 (668)
.-+..+-+..+....+.|++......+.+|.+.+|+..|.++|+-++.+ ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3345556666667778999999999999999999999999999998754 4444666776664
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.97 E-value=16 Score=28.46 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=41.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 584 EMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 584 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.+..-|++....+.+.+|.+-+|+..|.++++-++....+...+|..+++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34567999999999999999999999999999999876555666776653
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.66 E-value=19 Score=26.21 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=59.1
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
..++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 22222222445667899999999999999999999877744 477888888887878877
Q ss_pred CCCCCCHHHHH
Q 005943 517 SRLKPNEITFL 527 (668)
Q Consensus 517 ~g~~p~~~~~~ 527 (668)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.67 E-value=21 Score=26.09 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=57.0
Q ss_pred chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 437 SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
..++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666665553 22222222345667899999999999999999998877754 466777777777777777
Q ss_pred CCCCCCHHHHH
Q 005943 517 SRLKPNEITFL 527 (668)
Q Consensus 517 ~g~~p~~~~~~ 527 (668)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55554444
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.46 E-value=24 Score=31.79 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCccch--HHHHHHHHHhcCChHHHHHHHc
Q 005943 338 RFALQVHGLIVTSGYELDYIV--GSNLIDLYARLGNVKSALELFH 380 (668)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 380 (668)
.....+.+.+.+.|..++... ..+.+...++.|+.+-+..+++
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 444666677777776655422 2234455556677777776666
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.62 E-value=11 Score=36.99 Aligned_cols=97 Identities=10% Similarity=-0.041 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCC--hhHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHH---
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPH--LEHYYCMVDLLGQAGCFDDAEQLIAEMP----FKPDKTIWA--- 595 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~--- 595 (668)
+...+...+.+.|+++.|.+.+.++... ...+. ...+..+++.+...+++..+...+.++. ..++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4556667777777777777777777643 22222 4566666677777777777777666651 122221111
Q ss_pred -HHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 005943 596 -SMLKACETHNNTKLVSIIAEQLLATSP 622 (668)
Q Consensus 596 -~l~~~~~~~~~~~~a~~~~~~~~~~~p 622 (668)
.-...+...+++..|-..|-++.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111123445667776666666555443
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=70.60 E-value=77 Score=30.87 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=52.3
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCcc--chHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCC
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIF--TGNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKR 84 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~ 84 (668)
|...+..|+++ +++.+++.|..|+.. .....+...+..|+.+-+.-+++.-... +..-.+. +...++.|+
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGH 92 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTC
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCC
Confidence 33444555554 444455556555433 2334556666778877777777654322 2222222 233345555
Q ss_pred hhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHhccCChHHHHHHHH
Q 005943 85 PNWAIRLYNHMLEYGSVEPNGFM--YSAVLKACSLSGDLDLGRLIHE 129 (668)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 129 (668)
.+- ++.+.+.|.. |+... -.+.+...+..|+.+.+..+++
T Consensus 93 ~~~----v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 93 TNM----VKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHH----HHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHH----HHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 543 3333444432 33211 1233444556666655554443
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.24 E-value=1e+02 Score=31.76 Aligned_cols=239 Identities=13% Similarity=-0.027 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHHcC-CCCcHH--HHHHHHHHhccccchHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 005943 401 GLNSLAYLLFRDMINSN-QDVNQF--IISSVLKVCSCLASLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGEIDDGL 477 (668)
Q Consensus 401 ~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 477 (668)
.+.+.|...+....... ..+... ....+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 37899999998887544 222222 22233334455553555555555543332 33333444555556789999999
Q ss_pred HHhccCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccC
Q 005943 478 ALFKFMPER---DVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYG 554 (668)
Q Consensus 478 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 554 (668)
..|..|... .....--+.+++...|+.++|..+|+.+... . +|-.++. ..+.|..-.. ... .
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lA-a~~Lg~~~~~-----~~~---~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVA-AQRIGEEYEL-----KID---K 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHH-HHHTTCCCCC-----CCC---C
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHH-HHHcCCCCCC-----CCC---C
Confidence 999999863 2333445667888899999999999998752 2 3333332 2233321000 000 0
Q ss_pred CCCC-h-----hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---CCc
Q 005943 555 LEPH-L-----EHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLATSP---EDP 625 (668)
Q Consensus 555 ~~p~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~ 625 (668)
..+. . ..-..-+..+...|....|...+..+....+......+.......|..+.++....+....+. .-|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 1110 0 011223456778899999988777663233444444444445677778777655543322110 012
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
..|..++.-+.+.-.++.+.-+---..+.+.
T Consensus 451 ~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f 481 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSYAMAIARQESAW 481 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 2345555555555555554443233334443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.72 E-value=39 Score=28.64 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 592 TIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 592 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
.-|......+...|++++|.++|+..++
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555555444
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.54 E-value=66 Score=28.77 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=107.2
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCcc---chHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhc
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIF---TGNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTS 81 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 81 (668)
..|....+.|+++ +++.+++.|..++.. .-...+...+..|+.+-+..+++.-..+ +..-++.+. ..+.
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-LAAI 81 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHH
Confidence 3455556677765 445555666555432 2235666777889988888887764332 222223333 2344
Q ss_pred CCChhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCch------------HhhHHH
Q 005943 82 NKRPNWAIRLYNHMLEYGSVEPNGFM--YSAVLKACSLSGDLDLGRLIHERITREKLEYDTV------------LMNTLL 147 (668)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~ll 147 (668)
.|+.+ +++.+.+.|.. ++... -.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+
T Consensus 82 ~~~~~----~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHH----HHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHH----HHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 55544 44555555533 43221 123444455667654 445555566655432 112344
Q ss_pred hhhhhcCChh--HHHHhhhhhh--hhhcCCCchhhhhhhhcc----hhhHHHHHHhCCCCChhh--HHHHHHHHHhCCCh
Q 005943 148 DMYVKCGSLT--RKLFDQYSNW--AASAYGNVALWNSMLSGG----KQVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEI 217 (668)
Q Consensus 148 ~~~~~~g~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~ 217 (668)
...+..|+.+ +.+++..... .....+............ ..+.+.+.+.|..++... -.+.+...++.|+.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 4555666666 4444331210 001111222222233333 677888888988776532 23455666778888
Q ss_pred HHHHHHhhc
Q 005943 218 DDGLALFNF 226 (668)
Q Consensus 218 ~~A~~~~~~ 226 (668)
+-+..+++.
T Consensus 233 ~~v~~Ll~~ 241 (285)
T 1wdy_A 233 GLVQRLLEQ 241 (285)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 888888873
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.00 E-value=92 Score=30.29 Aligned_cols=174 Identities=13% Similarity=0.071 Sum_probs=80.1
Q ss_pred HHHHHHHcCCChhHHHHhhhhcCCCChh--HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCc--hHHHHHHHHhcc
Q 005943 43 NLLSMYADFTSLNDAHKLFDEMARKNIV--SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGF--MYSAVLKACSLS 118 (668)
Q Consensus 43 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~ 118 (668)
..+...+..|+.+-+..+++.-..++.. ...+.+...++.|+.+-+..++ +.|.. ++.. .-.+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~-~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAK-VNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCC-SSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCC-CCCCCCCCCCHHHHHHHC
Confidence 4556667889999988888864443322 1122333445667765544444 44432 3221 122345556677
Q ss_pred CChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChh--HHHHhhhhhh-hhhcCCCchhhhhhhhcchhhHHHHH
Q 005943 119 GDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLT--RKLFDQYSNW-AASAYGNVALWNSMLSGGKQVHAFCV 193 (668)
Q Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (668)
|+.+-+ +.+.+.|..|+... -.+.+...+..|+.+ +.+++.-... .....+......+...+...+.+.+.
T Consensus 91 g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 91 GHTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp TCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 777544 44445566554321 223344455566655 3333321110 00001111222223333445555555
Q ss_pred HhCCCCChhh--HHHHHHHHHhCCChHHHHHHhh
Q 005943 194 KRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFN 225 (668)
Q Consensus 194 ~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 225 (668)
+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 6655544321 1122333445555554444444
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.51 E-value=1e+02 Score=29.58 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHccCCCC--------ChhhHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCcHH----
Q 005943 357 IVGSNLIDLYARLGNVKSALELFHRLPKK--------DVVAWSGLIMGCTKHG-LNSLAYLLFRDMINSNQDVNQF---- 423 (668)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~---- 423 (668)
.....|...|.+.|+.++..+++.....- ..-....++..+.... ..+.-.++..+..+....-...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999999988888877641 2223455666665543 2333344444433211100111
Q ss_pred -HHHHHHHHhccccchHhHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCChHHHHHHhcc
Q 005943 424 -IISSVLKVCSCLASLRRGKQVHAFCVKRGFEKE-----DITLTSLIDMYLKCGEIDDGLALFKF 482 (668)
Q Consensus 424 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~ 482 (668)
.=..+...|...|++.+|..++..+.+.=-..| ..++-.-+..|...+++.++...+..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112345556666666666666665554311111 12233444555566666666555543
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.25 E-value=32 Score=33.78 Aligned_cols=94 Identities=9% Similarity=-0.103 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHH--HH
Q 005943 459 TLTSLIDMYLKCGEIDDGLALFKFMPE------RDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQS---RLKPNEIT--FL 527 (668)
Q Consensus 459 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~--~~ 527 (668)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+++.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556678888888888888888887653 22446777778888888888888888776542 33333321 11
Q ss_pred HHHHHhhcCCCHHHHHHHHHhcccc
Q 005943 528 GVLSACRHAGLVEEAWTIFTSMKPE 552 (668)
Q Consensus 528 ~ll~~~~~~g~~~~a~~~~~~~~~~ 552 (668)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222345667788777777666543
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=59.27 E-value=63 Score=28.58 Aligned_cols=55 Identities=13% Similarity=-0.097 Sum_probs=38.4
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCccc-------hHHHHHHHH--cCCChhHHHHhhhhc
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT-------GNNLLSMYA--DFTSLNDAHKLFDEM 64 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~ 64 (668)
|-..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445577999999999999999887766443 233433322 678888888888753
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.10 E-value=62 Score=27.43 Aligned_cols=73 Identities=8% Similarity=0.041 Sum_probs=55.0
Q ss_pred CChh---HHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005943 67 KNIV---SWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDT 140 (668)
Q Consensus 67 ~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 140 (668)
.|+. .|-..+..+ ..++...+.++|..|...|+..--..-|-.....+-..|++.+|.++++.-++.+-+|-.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4555 344444443 245577999999999999977334456777888888999999999999999998877743
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.26 E-value=83 Score=26.42 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCChhhHHHHHHHHHhcCC
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKKDVVAWSGLIMGCTKHGL 402 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 402 (668)
..+..+.+.+..+....+.+.+..++...-...+.++...++
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444444444444444
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.99 E-value=1.2e+02 Score=28.14 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCCccch--HHHHHHHHHhcCChHHHHHHHccCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 005943 339 FALQVHGLIVTSGYELDYIV--GSNLIDLYARLGNVKSALELFHRLP----KKDVVAWSGLIMGCTKHGLNSLAYLLFRD 412 (668)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 412 (668)
....+.+.+.+.|..++... ..+.+...+..|..+.+..++..-. ..|..-++.|..+ ++.|+.+ +.+.
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 34456666777887665432 2234555667788888877776421 1222222333333 3445543 3444
Q ss_pred HHHcCCCCcHH
Q 005943 413 MINSNQDVNQF 423 (668)
Q Consensus 413 m~~~~~~~~~~ 423 (668)
+++.|..++..
T Consensus 292 Ll~~GAd~n~~ 302 (337)
T 4g8k_A 292 LCKRGASTDCG 302 (337)
T ss_dssp HHTTSCSSTTC
T ss_pred HHHCCCCCCCC
Confidence 56677666543
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.91 E-value=87 Score=26.55 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcC
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNG 502 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 502 (668)
+..+-...+.++.+.+..+....+..-+.+++...-...+.++.+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333333444444444333323333333344433333444444433
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.49 E-value=94 Score=26.84 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=25.0
Q ss_pred hhhHHHHHHhCCCCChhh---HHHHHHHHHhCCChHHHHHHhhcc
Q 005943 186 KQVHAFCVKRGFEKEDVT---LTSLIDMYLKCGEIDDGLALFNFM 227 (668)
Q Consensus 186 ~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~ 227 (668)
..+.+.+.+.|..++... -.+.+...++.|+.+-+..+++.-
T Consensus 129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 345556666676655432 234455566778877777777653
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.48 E-value=94 Score=26.84 Aligned_cols=182 Identities=13% Similarity=-0.010 Sum_probs=93.3
Q ss_pred HHHHhcccCchhhhhhhHHHHHHhcCCCCccc--hHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCC
Q 005943 9 ALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT--GNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNK 83 (668)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 83 (668)
.|...++.|+.+.+..+++.+.+.|..++... ....+...+..|+.+-+..+++.-..+ +..-++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 34455667888888888887777776555332 234556667788888777777654332 2222222 33345667
Q ss_pred ChhhHHHHHHHHHhcCCC--CCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH---hhHHHhhhhhcCChhH
Q 005943 84 RPNWAIRLYNHMLEYGSV--EPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL---MNTLLDMYVKCGSLTR 158 (668)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~ 158 (668)
+.+-+..+++.....+.. ..+..-. +.+...+..|+.+ +++.+.+.|..++... ..+.+...+..|+.
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~-- 163 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-- 163 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH--
T ss_pred CHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCH--
Confidence 765555444443211111 0122222 2334444556654 4445555665554321 22333333444443
Q ss_pred HHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHhhc
Q 005943 159 KLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
.+.+.+.+.|..++... -.+.+...++.|+.+-+..+++.
T Consensus 164 ----------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 164 ----------------------------SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp ----------------------------HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred ----------------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 34445555666554332 12344455667777766666654
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.55 E-value=55 Score=25.42 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCC--cHHHHHHHHHHHHcCCCCcHHHH
Q 005943 360 SNLIDLYARLGNVKSALELFHRLPKKD---VVAWSGLIMGCTKHGL--NSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 347778888899999999999987652 2334445555555432 35677888888877765555443
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.12 E-value=77 Score=25.44 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 005943 610 VSIIAEQLLA--TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAGKKL 654 (668)
Q Consensus 610 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 654 (668)
+.++|..+.. +....+..|...+..+-..|++.+|.++++.-.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455555554 33444455555565666666666666666554443
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=55.53 E-value=76 Score=29.95 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHhcccCchhhhhhhHHHHHHhcCCCCccc--hHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChh
Q 005943 9 ALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT--GNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPN 86 (668)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 86 (668)
.|...+..|+.+. ++.+++.|..++... ....+...+..|+.+-+.-+++.-...+...-.+.+...+..|+.+
T Consensus 23 ~L~~Aa~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 98 (364)
T 3ljn_A 23 KIHVAARKGQTDE----VRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHH
Confidence 3444455666644 444555676555432 2345566677888888888777655443322222333445667777
Q ss_pred hHHHHHHHHHhcC
Q 005943 87 WAIRLYNHMLEYG 99 (668)
Q Consensus 87 ~a~~~~~~m~~~~ 99 (668)
-+..+++.....|
T Consensus 99 ~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 99 LVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHhccccC
Confidence 7666666644434
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.70 E-value=1.2e+02 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 005943 557 PHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA 619 (668)
Q Consensus 557 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 619 (668)
++..+-...+.++.+.|+..-.-.+...+. .|+ .-...+.++.+.|+. .+...+.++.+
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 344444455555555554332222333222 122 122334444444542 34444444443
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.63 E-value=1.1e+02 Score=26.34 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=58.9
Q ss_pred hcccCchhhhhhhHHHHHHhcCCCCcc--chHHHHHHHHcCCChhHHHHhhhhcCCCChh----HHHHHHHHHhcCCChh
Q 005943 13 CGQRRSIKQGKSLHCRIIKYGLSQDIF--TGNNLLSMYADFTSLNDAHKLFDEMARKNIV----SWTTMVTAYTSNKRPN 86 (668)
Q Consensus 13 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~ 86 (668)
.++.|+++ +++.+.+.|..++.. .....+...++.|+.+-+.-+++.-...+.. .++ .+...+..|+.+
T Consensus 16 A~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~~~ 90 (240)
T 3eu9_A 16 ATQYGIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGHLS 90 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTCHH
T ss_pred HHHcCChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC-hhHHHHHcCCHH
Confidence 34456654 445555667555432 2334667778889988888888765432211 222 333334556644
Q ss_pred hHHHHHHHHHhcCCCCCCCch--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005943 87 WAIRLYNHMLEYGSVEPNGFM--YSAVLKACSLSGDLDLGRLIHERITREKLEYD 139 (668)
Q Consensus 87 ~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 139 (668)
+++.+.+.|.. ++... -.+.+...+..|+.+ +++.+.+.|..++
T Consensus 91 ----~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 91 ----MVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp ----HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred ----HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 34444555533 43221 123445555667765 4444555565543
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.91 E-value=1.2e+02 Score=27.99 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhc---CC
Q 005943 498 CGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQA---GC 574 (668)
Q Consensus 498 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 574 (668)
+.+.|++++|+..|+.... ...+.......+.+++.++++...+ .....-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~----------~i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIY----------RITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHH----------HHHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCccc
Q ss_pred hHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 005943 575 FDDAEQLIAEM---PFKP--DKTIWASMLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKVRK 649 (668)
Q Consensus 575 ~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 649 (668)
..+.+++-.-+ +..| -..+....+..+.+.+++..|..+.++++++.|. ....++|++++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHH
Q ss_pred HHHhcC
Q 005943 650 AGKKLG 655 (668)
Q Consensus 650 ~~~~~~ 655 (668)
.....+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.95 E-value=1.1e+02 Score=33.63 Aligned_cols=47 Identities=9% Similarity=-0.106 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHh-cCCCCch----hHHHHHHHHHhcC
Q 005943 593 IWASMLKACETHNNTKLVSIIAEQLLA-TSPEDPS----KYVMLSNVYATLG 639 (668)
Q Consensus 593 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~g 639 (668)
-|..++..+.+.+-++.+.++.+.+++ ..++++. .+..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 567788888889999999999999887 4555544 4555555555443
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.92 E-value=1e+02 Score=25.11 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 005943 590 DKTIWASMLKACETHNNTKLVSIIAEQLLATS 621 (668)
Q Consensus 590 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 621 (668)
-..-|......+...|+++.|.++|+..++..
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666666677777777777766644
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.73 E-value=51 Score=26.54 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCChHHHHHHHccCCCCC---hhhHHHHHHHHHhcCC--cHHHHHHHHHHHHcCCCCcHHHH
Q 005943 360 SNLIDLYARLGNVKSALELFHRLPKKD---VVAWSGLIMGCTKHGL--NSLAYLLFRDMINSNQDVNQFII 425 (668)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 425 (668)
+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+.....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 447778888899999999999987652 2334445555555433 34677888888877765555443
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.82 E-value=97 Score=29.18 Aligned_cols=92 Identities=10% Similarity=0.014 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhcc
Q 005943 42 NNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLS 118 (668)
Q Consensus 42 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 118 (668)
...|...+..|+.+.+..+++.-..+ |..-++.|.. .+..|+.+- ++.+.+.|.. ++...-.+.+...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~-~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVDT----AKYLASVGEV-HSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHHCCHHH----HHHHHHHCCC-CCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHH-HHHcCCHHH----HHHHHHCCCC-ccccCCCCHHHHHHHc
Confidence 34556667889988888888764332 2222333333 345566543 4444555543 4443334455566677
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 005943 119 GDLDLGRLIHERITREKLEYD 139 (668)
Q Consensus 119 ~~~~~a~~~~~~~~~~~~~~~ 139 (668)
|+.+-+..+++.....|..++
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHhccccCCCHH
Confidence 888888777777655555443
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.69 E-value=1.4e+02 Score=25.54 Aligned_cols=173 Identities=11% Similarity=0.069 Sum_probs=81.2
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCccc--hHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCC
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT--GNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKR 84 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~ 84 (668)
|...+..|+.+ +++.+.+.|..++... ....+...+..|+.+-+..+++.-..+ +....+. +...+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCC
Confidence 33444556654 5555666676554322 224555566778887777777653322 2222222 233345565
Q ss_pred hhhHHHHHHHHHhcCCCCCC---CchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChhHH
Q 005943 85 PNWAIRLYNHMLEYGSVEPN---GFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLTRK 159 (668)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~ 159 (668)
.+ +++.+.+.+...++ ..-. +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---- 156 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGC---- 156 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC----
T ss_pred HH----HHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCC----
Confidence 44 34444444411122 2122 2344445556654 4444455565543321 1122222233333
Q ss_pred HHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHhhc
Q 005943 160 LFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
..+.+.+.+.|..++... -.+.+...++.|+.+-+.-+++.
T Consensus 157 --------------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (237)
T 3b7b_A 157 --------------------------VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199 (237)
T ss_dssp --------------------------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred --------------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence 344455555665554322 12344455667777766666654
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=45.50 E-value=1.1e+02 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=18.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 005943 597 MLKACETHNNTKLVSIIAEQLLATSPEDPSKYVMLSN 633 (668)
Q Consensus 597 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 633 (668)
.+..|.+.|.+++|.+++++.....+.+...-..|..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3344667777777777777766655444433333333
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.22 E-value=85 Score=28.37 Aligned_cols=145 Identities=14% Similarity=0.084 Sum_probs=72.0
Q ss_pred HHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHhccCC
Q 005943 43 NLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFM--YSAVLKACSLSGD 120 (668)
Q Consensus 43 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~ 120 (668)
..+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+. .+.+.|.. ++... -.+.+...+..|+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~ 107 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLD-DSQFDDKGNTALYYAVDSGN 107 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCC-CCCcCCCCCcHHHHHHHcCC
Confidence 45556667888888887777643322221123344446667765443 33444533 33221 1233444556677
Q ss_pred hHHHHHHHHHHHHcCCCCCch---HhhHHHhhhhhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCC
Q 005943 121 LDLGRLIHERITREKLEYDTV---LMNTLLDMYVKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGF 197 (668)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 197 (668)
.+-+..++ +.|..++.. -+.+.+...+..|+.+ +.+.+.+.|.
T Consensus 108 ~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~------------------------------~v~~Ll~~g~ 153 (285)
T 3kea_A 108 MQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVS------------------------------IVSYFLSEIP 153 (285)
T ss_dssp HHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHH------------------------------HHHHHHTTSC
T ss_pred HHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHH------------------------------HHHHHHhCCC
Confidence 65444443 445544432 2133444444444433 3344444554
Q ss_pred CCChh-hHHHHHHHHHhCCChHHHHHHhhc
Q 005943 198 EKEDV-TLTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 198 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
.+... .-.+.+...+..|+.+-+.-+++.
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 44222 334555566677887777666654
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.01 E-value=1.9e+02 Score=26.02 Aligned_cols=113 Identities=14% Similarity=0.043 Sum_probs=51.0
Q ss_pred hhHHHHHHhCCCCChhh---HHHHHHHHHhCCChHHHHHHhhccCCCCcchHHHHhhhcccCchhhHHHHHHHHHcCCCH
Q 005943 187 QVHAFCVKRGFEKEDVT---LTSLIDMYLKCGEIDDGLALFNFMPERDVVSWTGIIVGCFECSCFTLSALVDMYSNCNVL 263 (668)
Q Consensus 187 ~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~ 263 (668)
.+.+.+.+.|..++... +.+.+...+..|+.+-+..+++.-.... +...-.+.+...+..|+.
T Consensus 109 ~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------~~~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 109 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--------------DLAILLSCIHITIKNGHV 174 (285)
T ss_dssp HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--------------CCSTHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--------------cccCCccHHHHHHHcChH
Confidence 34444455555544322 2345555666777776666665433221 111122333344556666
Q ss_pred HHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 005943 264 CEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLSHIHSSGMCIDSY 320 (668)
Q Consensus 264 ~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 320 (668)
+-+.-+++.-... ...+..-++..+...+..|+ .++.+.+.+.|..|+..
T Consensus 175 ~~v~~Ll~~gad~---n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 175 DMMILLLDYMTST---NTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHHHT---CTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTT
T ss_pred HHHHHHHHcCCCC---CcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Confidence 6666555543211 11222222322222333444 33445555666655544
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.32 E-value=1.6e+02 Score=24.78 Aligned_cols=153 Identities=14% Similarity=0.021 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 005943 456 EDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACRH 535 (668)
Q Consensus 456 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 535 (668)
+...-...+..+.+.+..+....+.+.+.+++...-...+.++...++.+ +...+.++.. .++...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 44444444555555555444444444455556555555566666665432 3333333332 3555555555556666
Q ss_pred CCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHH
Q 005943 536 AGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAE 615 (668)
Q Consensus 536 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 615 (668)
.|+.+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+-..++...-...+.++.+.+.. .+...+.
T Consensus 108 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~ 180 (211)
T 3ltm_A 108 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAME 180 (211)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHH
T ss_pred hCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 66543 3333333332 466666666677777777644 333333332356666666666666666653 3444444
Q ss_pred HHHh
Q 005943 616 QLLA 619 (668)
Q Consensus 616 ~~~~ 619 (668)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 300
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.63 E-value=32 Score=22.26 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=27.7
Q ss_pred hhhhhhhHHHHHHhcCCCCccchHHHHHHH-HcCCC
Q 005943 19 IKQGKSLHCRIIKYGLSQDIFTGNNLLSMY-ADFTS 53 (668)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~ 53 (668)
.++|...|.+|++..-.++..+|...++.+ ++-.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 367888898888887777888999999888 55443
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.05 E-value=3.4e+02 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHh
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVL 296 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 296 (668)
.++-.+.++|++++|.++.++.... ...-...+-..+..++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~---~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN---IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG---C-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh---HhhhhHHHHHHHHHHHh
Confidence 5677789999999999999877431 21122456666777764
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.80 E-value=1.1e+02 Score=28.86 Aligned_cols=244 Identities=7% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCchHhhHHHhhh
Q 005943 73 TTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSG--DLDLGRLIHERITREKLEYDTVLMNTLLDMY 150 (668)
Q Consensus 73 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 150 (668)
..+|.-|...++.++|...++++.... -.......++......+ ..+.+-.++..+. .++-+.......+...+
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~---~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGE---MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCG---GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCch---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q ss_pred hhcCChhHHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhhHHHHHHHHHhCCChHHHHHHhhccCCC
Q 005943 151 VKCGSLTRKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLTSLIDMYLKCGEIDDGLALFNFMPER 230 (668)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 230 (668)
....+..-.+ |....|-..+-+-+-..+.=.-..+.+.....
T Consensus 134 e~ldDl~lDi--------------------------------------P~a~~~la~flaRaV~d~~l~~~~l~~~~~~~ 175 (358)
T 3eiq_C 134 KDLPELALDT--------------------------------------PRAPQLVGQFIARAVGDGILCNTYIDSYKGTV 175 (358)
T ss_dssp HTHHHHHHHC--------------------------------------TTHHHHHHHHHHHHHHTTCSCSSTTGGGC---
T ss_pred Hhhhhhcccc--------------------------------------ccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc
Q ss_pred CcchHHHHhhhccc--CchhhHHHHHHHHHcCCCHHHHHHHHHHhhhhhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHH
Q 005943 231 DVVSWTGIIVGCFE--CSCFTLSALVDMYSNCNVLCEARKLFDQYSSWAASAYGNVALWNSMISGYVLNEQNEEAITLLS 308 (668)
Q Consensus 231 ~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 308 (668)
+...-...+..... .-......+-+...-.|......++-+++ +.++.-|...++.++|...++
T Consensus 176 ~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veelkkki--------------~~lL~EY~~s~D~~EA~~ci~ 241 (358)
T 3eiq_C 176 DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEI--------------DMLLKEYLLSGDISEAEHCLK 241 (358)
T ss_dssp CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHHHHHH--------------HHHHHHHHHHCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHHHHHH--------------HHHHHHhccCCCHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCCccchHHHHHHHHHhcCChH
Q 005943 309 HIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGLIVTSGYELDYIVGSNLIDLYARLGNVK 373 (668)
Q Consensus 309 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 373 (668)
++......+... ...+..++-+.++...+....++..+.+.|+-+.......+...+....++.
T Consensus 242 EL~~p~fhhe~V-~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~ 305 (358)
T 3eiq_C 242 ELEVPHFHHELV-YEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDIN 305 (358)
T ss_dssp HHCCTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCcchHHHH-HHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhh
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.72 E-value=1.1e+02 Score=26.77 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=20.4
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 005943 622 PEDPSKYVMLSNVYATLGMWDSLSKVRKAGK 652 (668)
Q Consensus 622 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 652 (668)
..++......+..+.+.|+-++|.++|=+.+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3345556666677777777777777765554
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.61 E-value=1.8e+02 Score=24.95 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=36.8
Q ss_pred HHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHhc
Q 005943 43 NLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFM--YSAVLKACSL 117 (668)
Q Consensus 43 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~ 117 (668)
..+...+..|+.+-+..+++.-... +..-++.+.. .+..|+.+- ++.+.+.|.. ++... -.+.+...+.
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME-AAENNHLEA----VKYLIKAGAL-VDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHHH----HHHHHTTTCC-CCCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHH-HHHhCCHHH----HHHHHhCCCC-CCCCCCCCCcHHHHHHH
Confidence 3455566778877777776654333 3333344443 355566543 3444455533 33211 1233444455
Q ss_pred cCChHHH
Q 005943 118 SGDLDLG 124 (668)
Q Consensus 118 ~~~~~~a 124 (668)
.|+.+-+
T Consensus 87 ~~~~~~~ 93 (237)
T 3b7b_A 87 KGHYEVV 93 (237)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 5665433
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.47 E-value=1.7e+02 Score=23.88 Aligned_cols=82 Identities=11% Similarity=0.015 Sum_probs=55.1
Q ss_pred HHHHhhhhcCC--CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHH
Q 005943 56 DAHKLFDEMAR--KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITR 133 (668)
Q Consensus 56 ~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (668)
.+.+.|....+ .|+......|..--.. +.+.++|..|..+|+..--..-|-.-...+-..|++..|.++++.-++
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444332 4555433333322222 447789999999997733344577777788889999999999999999
Q ss_pred cCCCCCc
Q 005943 134 EKLEYDT 140 (668)
Q Consensus 134 ~~~~~~~ 140 (668)
.+-+|-.
T Consensus 125 ~~A~P~~ 131 (164)
T 2wvi_A 125 QKAEPLE 131 (164)
T ss_dssp TTCBSHH
T ss_pred cCCCcHH
Confidence 8888754
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.80 E-value=1.9e+02 Score=24.38 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=40.0
Q ss_pred HHHHHHHH---hcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc-----hHhHHHHHHHHHHhCC
Q 005943 391 SGLIMGCT---KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS-----LRRGKQVHAFCVKRGF 453 (668)
Q Consensus 391 ~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 453 (668)
..+|+++. +..+++.|+-.+.+|++.| .|....-..++.+....|. +..|...++.....|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455554 4588999999999999999 7776666666666655553 2333334444444554
No 307
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.32 E-value=2.6e+02 Score=25.72 Aligned_cols=53 Identities=11% Similarity=0.062 Sum_probs=32.6
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCccc---hHHHHHHHHcCCChhHHHHhhhhc
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT---GNNLLSMYADFTSLNDAHKLFDEM 64 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~ 64 (668)
++|-...+.|+++.+ +.+++.|..++... -..-|...++.|+.+-+.-+++.-
T Consensus 27 t~L~~Av~~g~~~~V----~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHH----HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 344455667777544 45556787765432 123455667888888877777654
No 308
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=35.79 E-value=1.8e+02 Score=23.68 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=61.4
Q ss_pred hhhhhhhHHHHHHhcCCCCccchHHHHHHHHcC-CChhHHHHhhhhcCC--CChhHHHHHHHHH---hcCCChhhHHHHH
Q 005943 19 IKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADF-TSLNDAHKLFDEMAR--KNIVSWTTMVTAY---TSNKRPNWAIRLY 92 (668)
Q Consensus 19 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~--~~~~~~~~li~~~---~~~~~~~~a~~~~ 92 (668)
+....+.|+..-..| ..+..-+..++..+... .....+..+|..+.. ....++..++.++ ......+....+|
T Consensus 20 i~~l~~~fd~~d~~G-~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f 98 (183)
T 1s6c_A 20 LQVLYRGFKNEXPSG-VVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTF 98 (183)
T ss_dssp HHHHHHHHHHHCTTS-EECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-cCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444444431122 33444455555554433 345566677777743 2334455444443 3333445566667
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHhcc----CC-----------hHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhc
Q 005943 93 NHMLEYGSVEPNGFMYSAVLKACSLS----GD-----------LDLGRLIHERITREKLEYDTVLMNTLLDMYVKC 153 (668)
Q Consensus 93 ~~m~~~~~~~p~~~~~~~ll~~~~~~----~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 153 (668)
+.+-..+ -...++.-+...+... |. .+.+..++..+-..| -...+|..++..+...
T Consensus 99 ~~~D~d~---~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~ 169 (183)
T 1s6c_A 99 NLYDINK---DGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNK--DGIVTLDEFLESXQED 169 (183)
T ss_dssp HHHCTTC---SSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTC--SSEECHHHHHHHTTSC
T ss_pred HHhCCCC---CCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCC--CCcEeHHHHHHHHhcC
Confidence 6665544 2334444444443322 32 255666666653332 2345566666555443
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.68 E-value=1.9e+02 Score=25.31 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=32.3
Q ss_pred HHhcCCChhhHHHHHHHHHhcCCCCCCCch-------HHHHHHHHh--ccCChHHHHHHHHHHH
Q 005943 78 AYTSNKRPNWAIRLYNHMLEYGSVEPNGFM-------YSAVLKACS--LSGDLDLGRLIHERIT 132 (668)
Q Consensus 78 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 132 (668)
..++.|+.+....+++.+.+.+.. ++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 346668888877777777777654 55332 233433332 5677776666666543
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=35.49 E-value=1.1e+02 Score=28.73 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=35.0
Q ss_pred hHHHHHHHHcCCChhHHHHhhhhcCCCChh---HHHHHHHHHhcCC-ChhhHHHHHHHHHhcCCC
Q 005943 41 GNNLLSMYADFTSLNDAHKLFDEMARKNIV---SWTTMVTAYTSNK-RPNWAIRLYNHMLEYGSV 101 (668)
Q Consensus 41 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~ 101 (668)
...++.-|...|+.++|.+.++++..|... .+..+..++-+.. ..+.+..++..+.+.+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 456777788888888888888888765421 2222222222211 223455666666665543
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.42 E-value=1.4e+02 Score=27.55 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCChhHHHHhhhhcCCC
Q 005943 42 NNLLSMYADFTSLNDAHKLFDEMARK 67 (668)
Q Consensus 42 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 67 (668)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34566666666677776666666544
No 312
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.73 E-value=2.1e+02 Score=26.78 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHccCCCCCh---hhHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCcHH
Q 005943 361 NLIDLYARLGNVKSALELFHRLPKKDV---VAWSGLIMGCTKHG-LNSLAYLLFRDMINSNQDVNQF 423 (668)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~ 423 (668)
.++.-|...|+.++|.+.++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-+...
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 477778888999999999999976632 12222222222211 2345666777777666544443
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.39 E-value=92 Score=27.39 Aligned_cols=56 Identities=13% Similarity=-0.188 Sum_probs=38.5
Q ss_pred HHHHhcccCchhhhhhhHHHHHHhcCCCCc------cchHHHHHHHHcC---CChhHHHHhhhhc
Q 005943 9 ALRHCGQRRSIKQGKSLHCRIIKYGLSQDI------FTGNNLLSMYADF---TSLNDAHKLFDEM 64 (668)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~---g~~~~a~~~~~~~ 64 (668)
.|...++.|+.+....+++.+.+.|..++. ..-...+...+.. |+.+-+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence 445566789999999999999998876554 1222344445555 8888887777653
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.16 E-value=2e+02 Score=23.86 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=83.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 005943 455 KEDITLTSLIDMYLKCGEIDDGLALFKFMPERDVVSWTGIIVGCGQNGRAKEAIAYFQEMIQSRLKPNEITFLGVLSACR 534 (668)
Q Consensus 455 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 534 (668)
++...-...+.++.+.+..+....+.+.+..++...-...+.++...++.+ +...+.++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444444555555555444445555555566665555666666666543 3334444443 456665556666666
Q ss_pred cCCCHHHHHHHHHhcccccCCCCChhHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Q 005943 535 HAGLVEEAWTIFTSMKPEYGLEPHLEHYYCMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIA 614 (668)
Q Consensus 535 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 614 (668)
+.++.+.. ..+..+.. .++..+-...+.++.+.|..+ +...+..+-..++...-...+.++.+.|+.+ +...+
T Consensus 102 ~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L 174 (201)
T 3ltj_A 102 QIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAM 174 (201)
T ss_dssp HHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHH
T ss_pred HhCcHHHH-HHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHH
Confidence 66664433 33333332 456666667777777777644 3333333323566666667777777776543 44444
Q ss_pred HHHH
Q 005943 615 EQLL 618 (668)
Q Consensus 615 ~~~~ 618 (668)
..+.
T Consensus 175 ~~~l 178 (201)
T 3ltj_A 175 EKLA 178 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.11 E-value=3.5e+02 Score=27.04 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCCCH-h------HH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 005943 458 ITLTSLIDMYLKCGEIDDGLALFKFMPERDV-V------SW-TGIIVGCGQNGRAKEAIAYFQEMIQ 516 (668)
Q Consensus 458 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~------~~-~~l~~~~~~~~~~~~a~~~~~~m~~ 516 (668)
..+|.++..|...+.++.|..+..+..-|.. . .| --+.+.+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455666666666666666666665544321 1 11 1223344455566666666655544
No 316
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.36 E-value=83 Score=22.59 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=44.6
Q ss_pred hhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhH
Q 005943 22 GKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWA 88 (668)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 88 (668)
...+++.+.+.|+ .+...+..+. +.....+.|.++++.+++.+...|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 4567778887773 2333333332 2467888999999999998999999999998887765444
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.36 E-value=48 Score=24.16 Aligned_cols=64 Identities=8% Similarity=0.049 Sum_probs=41.5
Q ss_pred hhhhHHHHHHhcCCCCccchHHHHHHHHc-C-CChhHHHHhhhhcCCCChhHHHHHHHHHhcCCChhhHH
Q 005943 22 GKSLHCRIIKYGLSQDIFTGNNLLSMYAD-F-TSLNDAHKLFDEMARKNIVSWTTMVTAYTSNKRPNWAI 89 (668)
Q Consensus 22 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~-g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 89 (668)
...+++.+.+.|+- +...... .-.. . .+.+.|.++++.++++....|..++.++...|+..-|.
T Consensus 23 ~~~vld~L~~~~vl-t~~~~e~---I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 23 VDQLWDVLLSRELF-RPHMIED---IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CTTTHHHHHHTTSS-CHHHHHH---HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHH---HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 34567777777632 2222221 2222 2 46888888888888888888888888887767665553
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.79 E-value=59 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHhcCCCCCCCchHHHHHHHH-hc
Q 005943 85 PNWAIRLYNHMLEYGSVEPNGFMYSAVLKAC-SL 117 (668)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~-~~ 117 (668)
.++|...|.+|++...+ ++..||...++.+ ++
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~ 34 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISELGTR 34 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccC
Confidence 46777888888777666 7778888888777 44
No 319
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.34 E-value=1e+02 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Q 005943 249 TLSALVDMYSNCNVLCEARKLFDQY 273 (668)
Q Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~~ 273 (668)
....++.-|...|+.++|.+.++++
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4566777777778888888888777
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.33 E-value=2.1e+02 Score=24.71 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 005943 575 FDDAEQLIAEM-PFKPDKTIWASMLKACETHNNTKLVSIIAEQLLA--TSPEDPSKYVMLSNVYATLGMWDSLSKVRKAG 651 (668)
Q Consensus 575 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 651 (668)
++++...|... ..+.|..-....+.......+.. .+|..+.. +...-...|...+..+-..|++.+|.++++.-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~---~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPV---ELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHH---HHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHccCCHH---HHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q ss_pred HhcC
Q 005943 652 KKLG 655 (668)
Q Consensus 652 ~~~~ 655 (668)
.+.+
T Consensus 177 i~~~ 180 (223)
T 4aez_C 177 KRMK 180 (223)
T ss_dssp HHHT
T ss_pred HHcC
No 321
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=31.51 E-value=2.8e+02 Score=24.74 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=22.1
Q ss_pred hhhHHHHHHhCCCCChhh--HHHHHHHHHhCCChHHHHHHhhc
Q 005943 186 KQVHAFCVKRGFEKEDVT--LTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 186 ~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
..+.+.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 345555556665554321 12344455667777766666654
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.41 E-value=1.6e+02 Score=29.34 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhcccccCCCCCh--hHH-HHHHHHhhhcCChHHHHHHHHhC
Q 005943 525 TFLGVLSACRHAGLVEEAWTIFTSMKPEYGLEPHL--EHY-YCMVDLLGQAGCFDDAEQLIAEM 585 (668)
Q Consensus 525 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 585 (668)
.++.+++.|...+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+..+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 47777778888888888888877764100001111 112 23345666677787887777654
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.28 E-value=2.5e+02 Score=23.67 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHH---hcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc
Q 005943 392 GLIMGCT---KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS 437 (668)
Q Consensus 392 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 437 (668)
.+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455554 458899999999999999988887777777776655543
No 324
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=29.89 E-value=1.2e+02 Score=25.65 Aligned_cols=197 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred hhhHHHHHHhcCCCCcc---chHHHHHHHHcCCChhHHHHhhhhcCCCChhHHH--HHHHHHhcCCChhhHHHHHHHHHh
Q 005943 23 KSLHCRIIKYGLSQDIF---TGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWT--TMVTAYTSNKRPNWAIRLYNHMLE 97 (668)
Q Consensus 23 ~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 97 (668)
.++++.+++.|..++.. .-...+...++.|+.+-+..+++.-..++..... +.+...+..|+.+-+..+++.-..
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q ss_pred cCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChh--HHHHhhhhh-hhhhcC
Q 005943 98 YGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLT--RKLFDQYSN-WAASAY 172 (668)
Q Consensus 98 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~--~~~~~~~~~-~~~~~~ 172 (668)
.-.. .+..-.+.+..++.... .++++.+.+.|..++... -.+.+...+..|+.+ +-+++.-.. ......
T Consensus 84 ~~~~-~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 157 (223)
T 2f8y_A 84 DLDA-RMHDGTTPLILAARLAV-----EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157 (223)
T ss_dssp CTTC-CCTTCCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred Cccc-CCCCCCcHHHHHHHhCc-----HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Q ss_pred CCchhhhhhhhcchhhHHHHHHhCCCCChhhHH--HHHHHHHhCCChHHHHHHhh
Q 005943 173 GNVALWNSMLSGGKQVHAFCVKRGFEKEDVTLT--SLIDMYLKCGEIDDGLALFN 225 (668)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~ 225 (668)
+......+...+...+.+.+.+.|..++..... +.+...++.|+.+-+.-+++
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.78 E-value=1.5e+02 Score=24.57 Aligned_cols=14 Identities=7% Similarity=-0.166 Sum_probs=7.7
Q ss_pred HHhCCChHHHHHHh
Q 005943 211 YLKCGEIDDGLALF 224 (668)
Q Consensus 211 ~~~~g~~~~A~~~~ 224 (668)
.+..|+.+-+..++
T Consensus 79 A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 79 AGAQGRTEILAYML 92 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34556665555555
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.43 E-value=2.9e+02 Score=24.14 Aligned_cols=26 Identities=12% Similarity=-0.107 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhh
Q 005943 252 ALVDMYSNCNVLCEARKLFDQYSSWA 277 (668)
Q Consensus 252 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 277 (668)
.-++.+....++++|..++++....-
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l 48 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQL 48 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45667888888888888888776543
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.37 E-value=1.1e+02 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Q 005943 249 TLSALVDMYSNCNVLCEARKLFDQY 273 (668)
Q Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~~ 273 (668)
....++.-|...|+.++|.+.++++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4456677777777777777777776
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.20 E-value=2.7e+02 Score=23.74 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=43.4
Q ss_pred hHHHHHHHHH---hcCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccc-----hHhHHHHHHHHHHhCC
Q 005943 389 AWSGLIMGCT---KHGLNSLAYLLFRDMINSNQDVNQFIISSVLKVCSCLAS-----LRRGKQVHAFCVKRGF 453 (668)
Q Consensus 389 ~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 453 (668)
.+..+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+....|. +..|...++.....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444566654 458899999999999999988888777777777665553 2333333444444453
No 329
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.83 E-value=3e+02 Score=23.86 Aligned_cols=56 Identities=11% Similarity=-0.101 Sum_probs=31.9
Q ss_pred HHHHhcCCChhhHHHHHHHHHhcCCCCCCC-------chHHHHHHHHhcc---CChHHHHHHHHHHHH
Q 005943 76 VTAYTSNKRPNWAIRLYNHMLEYGSVEPNG-------FMYSAVLKACSLS---GDLDLGRLIHERITR 133 (668)
Q Consensus 76 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 133 (668)
+...++.|+.+.+..+++.+.+.|.. ++. .-.+ .+...+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCc
Confidence 34446677887777777777776644 443 2223 33333444 777666666655433
No 330
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.31 E-value=1.7e+02 Score=29.24 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCChhhHHHH
Q 005943 605 NNTKLVSIIAEQLLATSPEDPSKYVMLSNVYATLGMWDSLSKV 647 (668)
Q Consensus 605 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 647 (668)
..++.|...|.++..+.|.+...|+.|+.+....|+.-+|.-+
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 3455666666666666666666666666666666655554433
No 331
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.26 E-value=2.6e+02 Score=22.96 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHH--hcC----------------CCCc
Q 005943 564 CMVDLLGQAGCFDDAEQLIAEMPFKPDKTIWASMLKACETHNNTKLVSIIAEQLL--ATS----------------PEDP 625 (668)
Q Consensus 564 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~----------------p~~~ 625 (668)
.+--.+.-.|.+..++-++.... ...+.---.-.+-+.+++..|...++.++ +.+ .+..
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~lN---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE 114 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKLN---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE 114 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCC---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred hhhhhhhhcchHhHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 005943 626 SKYVMLSNVYATLGMWDSLSKVRKAGKKLGE 656 (668)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 656 (668)
-.+..++.++.+.|+.+||+.++..--...+
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
No 332
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=27.01 E-value=3.2e+02 Score=23.89 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=84.7
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCccc--hHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCCC
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFT--GNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNKR 84 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~ 84 (668)
|...+..|+.+ +++.+++.|..++... ....+...+..|+.+-+..+++.-..+ |..-++.+..+ +..|+
T Consensus 7 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 81 (261)
T 2xai_A 7 MHEAAIHGHQL----SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA-CVSGS 81 (261)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTC
T ss_pred HHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCC
Confidence 33444556654 4445555665554332 224555566778888887777754332 22223333333 44455
Q ss_pred hhhHHHHHHHHHhcCCCCCCCc-hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChhHHHH
Q 005943 85 PNWAIRLYNHMLEYGSVEPNGF-MYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLTRKLF 161 (668)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~~~~ 161 (668)
.+ +++.+.+.|.. ++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.
T Consensus 82 ~~----~v~~Ll~~g~~-~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----- 147 (261)
T 2xai_A 82 WD----CVNLLLQHGAS-VQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR----- 147 (261)
T ss_dssp HH----HHHHHHHTTCC-SSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH-----
T ss_pred HH----HHHHHHHCCCC-CCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCH-----
Confidence 44 34444555533 3321 1233455556667765 4444555565544321 11223333334433
Q ss_pred hhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhCCCCChhh-HHHHHHHHHhCCChHHHHHHhhc
Q 005943 162 DQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRGFEKEDVT-LTSLIDMYLKCGEIDDGLALFNF 226 (668)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 226 (668)
.+.+.+.+.|..++... -.+.+...++.|+.+-+.-+++.
T Consensus 148 -------------------------~~v~~Ll~~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 188 (261)
T 2xai_A 148 -------------------------ACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDF 188 (261)
T ss_dssp -------------------------HHHHHHHHHTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred -------------------------HHHHHHHHcCCCCCCCCCCCChHHHHHHcCCHHHHHHHHHc
Confidence 34444555565554321 12344455566777766666654
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.89 E-value=74 Score=25.08 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCCh
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSL 54 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 54 (668)
.+|..+...+..-.|.++++.+.+.+...+..|-...|+.+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555555556667777777777666555666655666666666643
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.73 E-value=2.1e+02 Score=22.62 Aligned_cols=48 Identities=8% Similarity=-0.034 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 445556666666677888888887776666777766666666655544
No 335
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=23.53 E-value=3e+02 Score=23.16 Aligned_cols=174 Identities=13% Similarity=0.028 Sum_probs=83.1
Q ss_pred HHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCChhHHHHhhhhcCCCCh------hHHHHHHHHHhcCC
Q 005943 10 LRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNI------VSWTTMVTAYTSNK 83 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~ 83 (668)
|...++.|+.+.+..+++.-.......+..- ...+...+..|+.+-+..+++.-..+++ .-++.+..+ +..|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A-~~~~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA-CSVG 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTS-CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH-HHHC
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCC-CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH-HHcC
Confidence 3444556776655555443211111122222 3455556778888888888887633332 223333333 4455
Q ss_pred ChhhHHHHHHHHHhcC--CC--CCCCchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCchH--hhHHHhhhhhcCChh
Q 005943 84 RPNWAIRLYNHMLEYG--SV--EPNGFMYSAVLKACSLSGDLDLGRLIHERITREKLEYDTVL--MNTLLDMYVKCGSLT 157 (668)
Q Consensus 84 ~~~~a~~~~~~m~~~~--~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~ 157 (668)
+.+ +++.+.+.| .. ..+..-. +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.
T Consensus 84 ~~~----~~~~Ll~~g~~~~~~~~~~~g~-t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~- 153 (228)
T 2dzn_A 84 NLE----VVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS----QFLIENGASVRIKDKFNQIPLHRAASVGSL- 153 (228)
T ss_dssp CHH----HHHHHHSSSSCCCTTCCCTTCC-CHHHHHHHTTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-
T ss_pred CHH----HHHHHHhCCCCcccccCCcCCC-CHHHHHHHcCCHhHH----HHHHHcCCCccccCCCCCCHHHHHHHcCCH-
Confidence 544 444555554 11 0122222 334445566776544 44445566554321 12233333444443
Q ss_pred HHHHhhhhhhhhhcCCCchhhhhhhhcchhhHHHHHHhC-CCCChh--hHHHHHHHHHhCCChHHHHHHh
Q 005943 158 RKLFDQYSNWAASAYGNVALWNSMLSGGKQVHAFCVKRG-FEKEDV--TLTSLIDMYLKCGEIDDGLALF 224 (668)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 224 (668)
.+.+.+.+.| ..++.. .-.+.+...+..|+.+-+..++
T Consensus 154 -----------------------------~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 154 -----------------------------KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp -----------------------------HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3344444455 333221 1123445556778887777777
No 336
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.53 E-value=2.2e+02 Score=20.73 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhCCCCccchHHHH
Q 005943 302 EAITLLSHIHSSGMCIDSYTFTSALKACINLLNFNSRFALQVHGL-IVTSGYELDYIVGSNL 362 (668)
Q Consensus 302 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l 362 (668)
.+.++.++...-|+.|+..+..-++..|...+--..+.+.+.+.- ....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 466677777777888888888887777777664322333333322 1234566666555443
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.51 E-value=78 Score=24.57 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHhcccCchhhhhhhHHHHHHhcCCCCccchHHHHHHHHcCCCh
Q 005943 8 EALRHCGQRRSIKQGKSLHCRIIKYGLSQDIFTGNNLLSMYADFTSL 54 (668)
Q Consensus 8 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 54 (668)
.++..+...+..-.|.++++.+.+.+...+..|-...|+.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555566777777777777776555666666666777776643
No 338
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.40 E-value=98 Score=24.38 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred HHHHhcccCchhhhhhhHHHHHHhcCCCCcc--chHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHhcCC
Q 005943 9 ALRHCGQRRSIKQGKSLHCRIIKYGLSQDIF--TGNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYTSNK 83 (668)
Q Consensus 9 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 83 (668)
.|...++.|+.+.+..+++. .+..++.. .....+.. +..|+.+-+..+++.-..+ |..-++.+.. .+..|
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~ 79 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHD-AARTG 79 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHcC
Confidence 34455566777777777665 22222211 12234455 7788888777777654332 2222333333 34556
Q ss_pred ChhhHHHHHHHHHhcCCCCCCCc--hHHHHHHHHhccCChHHHHHHHHH
Q 005943 84 RPNWAIRLYNHMLEYGSVEPNGF--MYSAVLKACSLSGDLDLGRLIHER 130 (668)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~ 130 (668)
+.+-+ +.+.+.|.. ++.. .-.+.+...+..|+.+-+..+++.
T Consensus 80 ~~~~v----~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 80 FLDTL----KVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp CHHHH----HHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred cHHHH----HHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 65433 334444432 3321 112334445566776665555544
No 339
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.30 E-value=1.1e+02 Score=19.83 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=13.6
Q ss_pred hccCChHHHHHHHHHHHHcCCCCC
Q 005943 116 SLSGDLDLGRLIHERITREKLEYD 139 (668)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~ 139 (668)
...|+++.|...+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 445566666666666655444443
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.03 E-value=1.5e+02 Score=24.01 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=40.9
Q ss_pred hhHHHHHHH-HHhcCCCCCCCchHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCCchHhhHHHhhhhhcCCh
Q 005943 86 NWAIRLYNH-MLEYGSVEPNGFMYSAVLKACSLSGDLDLGRLIHERITRE--KLEYDTVLMNTLLDMYVKCGSL 156 (668)
Q Consensus 86 ~~a~~~~~~-m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~ 156 (668)
+.+.+-+.+ +.+.|.. + +..-..++..+...++.-.|.++++.+.+. +...+..|.---|+.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r-~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLK-Y-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCC-C-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 4445543 3 334456666776767777788888888776 6666665555555566666543
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.08 E-value=2e+02 Score=22.65 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcC
Q 005943 119 GDLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCG 154 (668)
Q Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 154 (668)
+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333444444444444443333333333334444444
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.92 E-value=3.3e+02 Score=22.28 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHHHcCCChhHHHHhhhhc
Q 005943 44 LLSMYADFTSLNDAHKLFDEM 64 (668)
Q Consensus 44 ll~~~~~~g~~~~a~~~~~~~ 64 (668)
.+...++.|+.+-+..+++.-
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g 62 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRG 62 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 444455667766666666643
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.88 E-value=1.9e+02 Score=23.38 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcccc
Q 005943 287 WNSMISGYVLNEQNEEAITLLSHIHSS--GMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 287 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
-..++..+...+..-.|.++++.+.+. +...+..|....|..+...|-+
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344556666666667777777777665 5555666655555555555543
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.55 E-value=1.6e+02 Score=22.75 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=34.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 289 SMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 289 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
.++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45556666667778888999888887777777777777777766654
No 345
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.53 E-value=1.9e+02 Score=22.44 Aligned_cols=60 Identities=7% Similarity=0.036 Sum_probs=31.9
Q ss_pred HHhcCCCCCCCchHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCchHhhHHHhhhhhcCCh
Q 005943 95 MLEYGSVEPNGFMYSAVLKACSLSG-DLDLGRLIHERITREKLEYDTVLMNTLLDMYVKCGSL 156 (668)
Q Consensus 95 m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 156 (668)
+.+.|.. ++ ..-..++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|-+
T Consensus 9 l~~~g~r-~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLK-VT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCC-CC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCC-CC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4445533 22 23334455555554 5566777777776666555555555555555555543
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.40 E-value=1.4e+02 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcccc
Q 005943 288 NSMISGYVLNEQNEEAITLLSHIHSSGMCIDSYTFTSALKACINLLNF 335 (668)
Q Consensus 288 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 335 (668)
..++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566666666778888888888887777777776666666665544
No 347
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.36 E-value=2e+02 Score=24.22 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=29.3
Q ss_pred hhHHHHhhhhcCC-CChh-------HHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 005943 54 LNDAHKLFDEMAR-KNIV-------SWTTMVTAYTSNKRPNWAIRLYNHMLEYG 99 (668)
Q Consensus 54 ~~~a~~~~~~~~~-~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 99 (668)
++.|+.+++.+.+ .+.. .--..+..|.+.|.+++|.++|++.....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCC
Confidence 5688888888854 2211 12234446788899999999988876654
No 348
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.05 E-value=5.6e+02 Score=24.62 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=20.0
Q ss_pred CchHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 005943 105 GFMYSAVLKACSLSGDLDLGRLIHERITREK 135 (668)
Q Consensus 105 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 135 (668)
..--..++.+++...+.....++++......
T Consensus 267 ~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 267 STEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 3345566677777777777777777666544
No 349
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.72 E-value=2.1e+02 Score=19.56 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=37.4
Q ss_pred HHHHcCCCCcHHHHHHHHHHhcccc-chHhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005943 412 DMINSNQDVNQFIISSVLKVCSCLA-SLRRGKQVHAFCVKRGFEKEDITLTSLIDMYLKCGE 472 (668)
Q Consensus 412 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (668)
.+.+.|++.+..-. .++..+...+ ..-.+.++.+.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 45567777766543 3445555544 556677888888777655566666666666666654
No 350
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=20.42 E-value=2.8e+02 Score=24.59 Aligned_cols=92 Identities=10% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHcCCChhHHHHhhhhcC-C---CChhHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCCCch--HHHHHHHHh
Q 005943 43 NLLSMYADFTSLNDAHKLFDEMA-R---KNIVSWTTMVTAYTSNKRPNWAIRLYNHMLEYGSVEPNGFM--YSAVLKACS 116 (668)
Q Consensus 43 ~ll~~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~ 116 (668)
..+...+..|+.+-+..+++.-. . .+..-++.+..+.........-.+++..+.+.|.. ++... -.+.+...+
T Consensus 113 T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~ 191 (276)
T 4hbd_A 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAV 191 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHH
Confidence 34445567788877777776543 2 23333444444444333344455566666665533 33221 123344445
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC
Q 005943 117 LSGDLDLGRLIHERITREKLEYD 139 (668)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~ 139 (668)
..|+.+- .+.+.+.|..++
T Consensus 192 ~~g~~~~----v~~Ll~~gad~n 210 (276)
T 4hbd_A 192 SHGRVDV----VKALLACEADVN 210 (276)
T ss_dssp HTTCHHH----HHHHHHTTCCTT
T ss_pred HcCCHHH----HHHHHhCCCCCC
Confidence 5666543 344445565543
No 351
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.26 E-value=4.5e+02 Score=23.17 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=24.3
Q ss_pred CCccchHHHHHHHHcCCChhHHHHhhhhcCCCChhHHHHHHHHHhcCC
Q 005943 36 QDIFTGNNLLSMYADFTSLNDAHKLFDEMARKNIVSWTTMVTAYTSNK 83 (668)
Q Consensus 36 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 83 (668)
++...-...+..+++.|..+....+.+.+..++...-...+.++.+.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 344444445555555554443344444444555555555555665555
No 352
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=20.18 E-value=5.4e+02 Score=24.06 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=40.5
Q ss_pred HHHhcccCchhhhhhhHH----HHHHhcCCCCcc--chHHHHHHHHcCCChhHHHHhhhhcCCC---ChhHHHHHHHHHh
Q 005943 10 LRHCGQRRSIKQGKSLHC----RIIKYGLSQDIF--TGNNLLSMYADFTSLNDAHKLFDEMARK---NIVSWTTMVTAYT 80 (668)
Q Consensus 10 l~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 80 (668)
|...+..|+.+.+..++. .+++.|..++.. .....+...+..|+.+-+.-+++.-..+ +...++. +...+
T Consensus 129 Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~-L~~A~ 207 (373)
T 2fo1_E 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA-LHQAA 207 (373)
T ss_dssp HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH-HHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH-HHHHH
Confidence 334445566555554442 344666555432 2223445556677777777666653322 2222222 33335
Q ss_pred cCCChhhHHHHHH
Q 005943 81 SNKRPNWAIRLYN 93 (668)
Q Consensus 81 ~~~~~~~a~~~~~ 93 (668)
..|+.+-+..+++
T Consensus 208 ~~g~~~~v~~Ll~ 220 (373)
T 2fo1_E 208 ANRDFGMMVYMLN 220 (373)
T ss_dssp HTTCHHHHHHHTT
T ss_pred HCCCHHHHHHHHh
Confidence 5666554444443
No 353
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.10 E-value=1.1e+02 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=30.0
Q ss_pred CChHHHHHHHccCCCCChhhHHHHHHHHHhcCCcHHHH
Q 005943 370 GNVKSALELFHRLPKKDVVAWSGLIMGCTKHGLNSLAY 407 (668)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 407 (668)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35788888888888888888888888887767665543
Done!