Query 005945
Match_columns 668
No_of_seqs 256 out of 544
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.9 1.8E-27 6.3E-32 217.1 12.9 120 108-230 3-127 (130)
2 2l7p_A Histone-lysine N-methyl 99.8 1.1E-19 3.8E-24 161.4 3.2 60 348-408 23-86 (100)
3 2e61_A Zinc finger CW-type PWW 99.7 6.2E-18 2.1E-22 141.4 2.8 51 347-398 12-67 (69)
4 4i1k_A B3 domain-containing tr 99.6 8.7E-15 3E-19 136.5 10.9 98 115-220 45-143 (146)
5 1yel_A AT1G16640; CESG, protei 99.4 9.5E-13 3.2E-17 115.1 10.0 94 115-218 7-100 (104)
6 4gut_A Lysine-specific histone 94.2 0.0054 1.8E-07 70.1 -1.6 49 350-399 90-149 (776)
7 1na6_A Ecorii, restriction end 88.6 0.47 1.6E-05 51.2 5.7 91 115-206 17-123 (404)
8 1we9_A PHD finger family prote 87.5 0.21 7.3E-06 39.8 1.7 30 350-379 19-54 (64)
9 1wee_A PHD finger family prote 87.0 0.32 1.1E-05 40.0 2.5 29 351-379 29-62 (72)
10 3kqi_A GRC5, PHD finger protei 84.3 0.37 1.3E-05 39.9 1.7 31 349-379 21-57 (75)
11 3o70_A PHD finger protein 13; 81.9 0.69 2.4E-05 38.1 2.4 30 350-379 30-63 (68)
12 2lv9_A Histone-lysine N-methyl 81.9 0.91 3.1E-05 39.6 3.3 32 349-380 38-73 (98)
13 2k16_A Transcription initiatio 79.3 1.2 4.2E-05 36.4 3.1 30 350-379 30-64 (75)
14 3o7a_A PHD finger protein 13 v 76.5 1.5 5.3E-05 33.8 2.7 29 350-378 15-47 (52)
15 2ri7_A Nucleosome-remodeling f 75.1 0.62 2.1E-05 43.4 0.2 31 350-380 20-56 (174)
16 2kgg_A Histone demethylase jar 71.9 1.7 5.9E-05 33.6 1.9 30 349-378 14-49 (52)
17 3kv5_D JMJC domain-containing 65.6 1.3 4.5E-05 48.5 0.1 31 350-380 49-85 (488)
18 1wep_A PHF8; structural genomi 65.3 2.4 8.1E-05 35.3 1.6 32 350-381 24-61 (79)
19 2vpb_A Hpygo1, pygopus homolog 65.0 2.8 9.6E-05 34.2 1.9 15 348-362 19-34 (65)
20 3o27_A Putative uncharacterize 60.6 8 0.00027 32.6 3.9 41 179-219 23-63 (68)
21 1wem_A Death associated transc 59.3 3.3 0.00011 34.1 1.4 30 350-379 27-66 (76)
22 1wew_A DNA-binding family prot 57.1 12 0.0004 31.1 4.4 31 349-379 26-68 (78)
23 2rsd_A E3 SUMO-protein ligase 52.2 9.7 0.00033 30.9 3.0 31 349-379 20-61 (68)
24 3lqh_A Histone-lysine N-methyl 42.4 8.1 0.00028 37.4 1.3 15 351-365 19-33 (183)
25 2ku7_A MLL1 PHD3-CYP33 RRM chi 39.8 6.8 0.00023 33.7 0.3 10 353-362 2-11 (140)
26 3kv4_A PHD finger protein 8; e 38.6 4.5 0.00015 44.1 -1.3 31 350-380 17-53 (447)
27 1weu_A Inhibitor of growth fam 38.2 37 0.0013 29.6 4.7 31 350-380 46-82 (91)
28 2g6q_A Inhibitor of growth pro 34.1 20 0.0007 28.8 2.2 29 351-379 22-56 (62)
29 1wen_A Inhibitor of growth fam 33.8 20 0.00067 29.7 2.1 30 351-380 27-62 (71)
30 2xb1_A Pygopus homolog 2, B-ce 33.7 15 0.00052 32.3 1.6 30 350-380 16-58 (105)
31 3c6w_A P28ING5, inhibitor of g 31.8 24 0.00081 28.1 2.2 28 351-378 20-53 (59)
32 2vb2_X Copper protein, cation 31.8 31 0.001 29.6 3.1 23 192-214 59-81 (88)
33 2qcp_X Cation efflux system pr 31.1 33 0.0011 28.9 3.1 24 191-214 50-73 (80)
34 2k75_A Uncharacterized protein 29.5 1E+02 0.0035 26.7 6.2 45 154-219 40-87 (106)
35 2jmi_A Protein YNG1, ING1 homo 28.1 32 0.0011 29.9 2.6 29 351-379 37-71 (90)
36 1n93_X P40 nucleoprotein; RNA 26.3 18 0.0006 37.9 0.7 17 484-500 160-176 (375)
37 4dok_A Similarity to chalcone- 24.7 50 0.0017 32.4 3.6 38 184-221 127-164 (208)
38 3m7a_A Uncharacterized protein 23.8 1.2E+02 0.004 28.3 5.7 51 153-203 83-140 (140)
39 2vnf_A ING 4, P29ING4, inhibit 23.2 42 0.0014 26.6 2.3 28 351-378 21-54 (60)
40 3e0e_A Replication protein A; 21.3 1.3E+02 0.0043 25.6 5.0 33 154-203 40-72 (97)
41 1x4i_A Inhibitor of growth pro 20.7 47 0.0016 27.3 2.1 30 350-379 16-51 (70)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.8e-27 Score=217.14 Aligned_cols=120 Identities=38% Similarity=0.721 Sum_probs=100.9
Q ss_pred cCCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCccccc-
Q 005945 108 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL- 183 (668)
Q Consensus 108 sgd~~s~~~~LF~KvLT~SDVgklgRLVIPK~~AE~~FPpL~~---~~G~~L~v~D~~Gk~W~FRfsyw~nn~SR~YVL- 183 (668)
++..+.+..++|.|+||+|||++.+||+||+++|+.|||.++. ..++.|.++|.+|++|+|+|+|| +.+++|+|
T Consensus 3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt 80 (130)
T 1wid_A 3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT 80 (130)
T ss_dssp -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence 3556677889999999999999889999999999999999874 57899999999999999999999 55678888
Q ss_pred cCchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCcccccc
Q 005945 184 EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 230 (668)
Q Consensus 184 ~GWs~FVrsK~LkaGDtVvF~R~e-~~GkL~IGVRRa~~~~~s~q~~~ 230 (668)
.||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|+++
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 599999999999999999999986 3468999999998654 465544
No 2
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.1e-19 Score=161.45 Aligned_cols=60 Identities=33% Similarity=0.812 Sum_probs=55.7
Q ss_pred CCcCceEeccccccccccCCCC----CCCCCceeecCCCCCCCCCCCcccccChHHHHHHhCCCC
Q 005945 348 GEKIQWVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNN 408 (668)
Q Consensus 348 ge~~~WVQCD~C~KWRrLP~~~----~lP~~W~C~mN~WDp~~~sCsaPEE~~~~el~~Ll~~~~ 408 (668)
....+|||||.|+|||+||..+ .+|++|||+||+ |+.+++|++|||.++++|+.+|+++.
T Consensus 23 ~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~ 86 (100)
T 2l7p_A 23 STESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86 (100)
T ss_dssp SSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred CCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence 4588999999999999999863 479999999998 99999999999999999999999986
No 3
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.68 E-value=6.2e-18 Score=141.39 Aligned_cols=51 Identities=35% Similarity=0.906 Sum_probs=47.0
Q ss_pred CCCcCceEecc--ccccccccCCCC---CCCCCceeecCCCCCCCCCCCcccccChH
Q 005945 347 VGEKIQWVQCE--DCSKWRKVPANA---RLPSKWTCSGNLWDPERSVCSVAQELREE 398 (668)
Q Consensus 347 ~ge~~~WVQCD--~C~KWRrLP~~~---~lP~~W~C~mN~WDp~~~sCsaPEE~~~~ 398 (668)
.++..+||||| .|+|||+||..+ .+|++|||+||+ |+.+++|++|||.++.
T Consensus 12 ~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 12 FGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWTG 67 (69)
T ss_dssp CCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred CCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence 46789999999 999999999985 589999999999 9999999999999874
No 4
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.57 E-value=8.7e-15 Score=136.50 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=83.2
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccC
Q 005945 115 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 194 (668)
Q Consensus 115 ~~~LF~KvLT~SDVgklgRLVIPK~~AE~~FPpL~~~~G~~L~v~D~~Gk~W~FRfsyw~nn~SR~YVL~GWs~FVrsK~ 194 (668)
-.+.|.|+||+|||.+..+|+||+.+++.|||.. ...|.++|. |+.|.|+|.|+. +++++..||..||++++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~ 116 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENN 116 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTT
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcC
Confidence 4679999999999997678999999999999975 468888998 699999999982 35555579999999999
Q ss_pred CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 005945 195 LQAGDIVTFSRLEPEG-KLVMGFRKAS 220 (668)
Q Consensus 195 LkaGDtVvF~R~e~~G-kL~IGVRRa~ 220 (668)
|++||+|+|...+... .|.|.|-|+.
T Consensus 117 L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 117 LGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999986433 6888887764
No 5
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.40 E-value=9.5e-13 Score=115.10 Aligned_cols=94 Identities=14% Similarity=0.263 Sum_probs=76.7
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccC
Q 005945 115 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 194 (668)
Q Consensus 115 ~~~LF~KvLT~SDVgklgRLVIPK~~AE~~FPpL~~~~G~~L~v~D~~Gk~W~FRfsyw~nn~SR~YVL~GWs~FVrsK~ 194 (668)
..+.|.|+|+++|. ..+|.||+..++.+.+.+ +..+.++|..|+.|.+++.++. .+.++..||..||++++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHT
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcC
Confidence 35689999999994 469999999997776644 4689999999999999999872 23344479999999999
Q ss_pred CCCCCEEEEEEecCCCeEEEEEEe
Q 005945 195 LQAGDIVTFSRLEPEGKLVMGFRK 218 (668)
Q Consensus 195 LkaGDtVvF~R~e~~GkL~IGVRR 218 (668)
|++||.|+|.... +..|.|-|=+
T Consensus 78 L~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 78 LEDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CCTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCCEEEEEEcC-CCeEEEEEEC
Confidence 9999999998864 6777776644
No 6
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=94.18 E-value=0.0054 Score=70.06 Aligned_cols=49 Identities=27% Similarity=0.725 Sum_probs=38.1
Q ss_pred cCceEecc--ccccccccCCCC----CCCCCceeecCCCCC-----CCCCCCcccccChHH
Q 005945 350 KIQWVQCE--DCSKWRKVPANA----RLPSKWTCSGNLWDP-----ERSVCSVAQELREEQ 399 (668)
Q Consensus 350 ~~~WVQCD--~C~KWRrLP~~~----~lP~~W~C~mN~WDp-----~~~sCsaPEE~~~~e 399 (668)
-+-||||- .|+|||+||... .++.+..|.|-. +. .-..|+.||++-..+
T Consensus 90 l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (776)
T 4gut_A 90 LPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLE 149 (776)
T ss_dssp SCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHH
T ss_pred CcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhh
Confidence 47999999 999999999885 457899998864 22 356799999965554
No 7
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=88.64 E-value=0.47 Score=51.23 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=64.2
Q ss_pred ccceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---C-CceEEE--EeCCCCeEEEEEEEcCC-----CCCc
Q 005945 115 ITPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---E-GLPLKV--QDSKGKEWIFQFRFWPN-----NNSR 179 (668)
Q Consensus 115 ~~~LF~KvLT~SDVgk----lgRLVIPK~~AE~~FPpL~~~---~-G~~L~v--~D~~Gk~W~FRfsyw~n-----n~SR 179 (668)
....|.|.|++.|++. ...+.+|+...+.+||.|... + .+.+.+ -|...-.+.++++|+ | ..+.
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twY-n~R~~~~tRn 95 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYY-NSAHFGKTRN 95 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEE-CGGGTTSCCC
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEe-cccccCCCCC
Confidence 3678999999999995 358999997688999988722 2 233333 344345559999988 3 1333
Q ss_pred cccccCch-hhhhccCCCCCCEEEEEEe
Q 005945 180 MYVLEGVT-PCIQNMQLQAGDIVTFSRL 206 (668)
Q Consensus 180 ~YVL~GWs-~FVrsK~LkaGDtVvF~R~ 206 (668)
.|-|+.|. .+.=.....+||.++|-+.
T Consensus 96 EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 96 EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 57888774 4555678889998888754
No 8
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.47 E-value=0.21 Score=39.80 Aligned_cols=30 Identities=20% Similarity=0.619 Sum_probs=20.9
Q ss_pred cCceEeccccccccccCC---C---CCCCCCceeec
Q 005945 350 KIQWVQCEDCSKWRKVPA---N---ARLPSKWTCSG 379 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP~---~---~~lP~~W~C~m 379 (668)
...|||||.|..|--+.= . +..++.|+|..
T Consensus 19 ~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 19 DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 468999999999944321 1 12368899865
No 9
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.98 E-value=0.32 Score=39.97 Aligned_cols=29 Identities=31% Similarity=0.776 Sum_probs=20.8
Q ss_pred CceEeccccccccccC---CC--CCCCCCceeec
Q 005945 351 IQWVQCEDCSKWRKVP---AN--ARLPSKWTCSG 379 (668)
Q Consensus 351 ~~WVQCD~C~KWRrLP---~~--~~lP~~W~C~m 379 (668)
..|||||.|..|--+. .. ..+|+.|+|..
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~ 62 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFR 62 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence 4799999999995443 11 14688999964
No 10
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=84.35 E-value=0.37 Score=39.95 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=21.0
Q ss_pred CcCceEecccccccccc------CCCCCCCCCceeec
Q 005945 349 EKIQWVQCEDCSKWRKV------PANARLPSKWTCSG 379 (668)
Q Consensus 349 e~~~WVQCD~C~KWRrL------P~~~~lP~~W~C~m 379 (668)
....|||||.|..|=-. ...+..++.|+|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~ 57 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN 57 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence 35689999999999432 22223457899864
No 11
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=81.89 E-value=0.69 Score=38.05 Aligned_cols=30 Identities=17% Similarity=0.733 Sum_probs=21.8
Q ss_pred cCceEeccccccccccCC-C---CCCCCCceeec
Q 005945 350 KIQWVQCEDCSKWRKVPA-N---ARLPSKWTCSG 379 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP~-~---~~lP~~W~C~m 379 (668)
...|||||.|..|--+.= + ..+|+.|+|..
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~ 63 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK 63 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence 467999999999964431 1 15689999953
No 12
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.86 E-value=0.91 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.674 Sum_probs=24.0
Q ss_pred CcCceEeccccccccccC---C-CCCCCCCceeecC
Q 005945 349 EKIQWVQCEDCSKWRKVP---A-NARLPSKWTCSGN 380 (668)
Q Consensus 349 e~~~WVQCD~C~KWRrLP---~-~~~lP~~W~C~mN 380 (668)
+...|||||.|.+|--+. . ...+|+.|||..-
T Consensus 38 ~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C 73 (98)
T 2lv9_A 38 DDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERC 73 (98)
T ss_dssp CSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTT
T ss_pred CCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCC
Confidence 457899999999996553 1 1257889999654
No 13
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.34 E-value=1.2 Score=36.42 Aligned_cols=30 Identities=23% Similarity=0.695 Sum_probs=20.5
Q ss_pred cCceEecccccccc-----ccCCCCCCCCCceeec
Q 005945 350 KIQWVQCEDCSKWR-----KVPANARLPSKWTCSG 379 (668)
Q Consensus 350 ~~~WVQCD~C~KWR-----rLP~~~~lP~~W~C~m 379 (668)
...||+||.|..|= .|+......+.|||..
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~ 64 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPK 64 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEEChh
Confidence 45899999999995 2333222347999954
No 14
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=76.52 E-value=1.5 Score=33.85 Aligned_cols=29 Identities=17% Similarity=0.749 Sum_probs=21.5
Q ss_pred cCceEeccccccccccCC-CC---CCCCCceee
Q 005945 350 KIQWVQCEDCSKWRKVPA-NA---RLPSKWTCS 378 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP~-~~---~lP~~W~C~ 378 (668)
...+||||.|..|--+.= ++ .+|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 468999999999965541 11 467899985
No 15
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=75.13 E-value=0.62 Score=43.40 Aligned_cols=31 Identities=19% Similarity=0.553 Sum_probs=21.5
Q ss_pred cCceEecccccccccc---CCC---CCCCCCceeecC
Q 005945 350 KIQWVQCEDCSKWRKV---PAN---ARLPSKWTCSGN 380 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrL---P~~---~~lP~~W~C~mN 380 (668)
...|||||.|..|=-. ... ...++.|+|..-
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C 56 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQC 56 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHH
T ss_pred CCCEeECCCCCchhChhhcCCchhhccCccCeecCCC
Confidence 4679999999999322 111 245789999754
No 16
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=71.90 E-value=1.7 Score=33.64 Aligned_cols=30 Identities=27% Similarity=0.851 Sum_probs=20.2
Q ss_pred CcCceEecc-ccccccccCC-CC----CCCCCceee
Q 005945 349 EKIQWVQCE-DCSKWRKVPA-NA----RLPSKWTCS 378 (668)
Q Consensus 349 e~~~WVQCD-~C~KWRrLP~-~~----~lP~~W~C~ 378 (668)
....||||| .|.+|=-+.= ++ ..+++|+|.
T Consensus 14 ~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 14 DKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp TTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 457899999 8999954431 12 124788885
No 17
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=65.62 E-value=1.3 Score=48.54 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=21.5
Q ss_pred cCceEeccccccccccC---CC---CCCCCCceeecC
Q 005945 350 KIQWVQCEDCSKWRKVP---AN---ARLPSKWTCSGN 380 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP---~~---~~lP~~W~C~mN 380 (668)
...|||||.|..|=-.. .. ...++.|+|..-
T Consensus 49 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C 85 (488)
T 3kv5_D 49 NRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85 (488)
T ss_dssp TSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHH
T ss_pred CCCeEEccCCCCceeeeecCcCcccccCCCEEECCCC
Confidence 57899999999994321 11 244688999654
No 18
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.28 E-value=2.4 Score=35.32 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=21.9
Q ss_pred cCceEeccccccccccC---CC---CCCCCCceeecCC
Q 005945 350 KIQWVQCEDCSKWRKVP---AN---ARLPSKWTCSGNL 381 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP---~~---~~lP~~W~C~mN~ 381 (668)
...|||||.|..|=-.. .. +..++.|+|..-.
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 61 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCE 61 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTT
T ss_pred CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcc
Confidence 57899999999993221 11 1347899997543
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.04 E-value=2.8 Score=34.25 Aligned_cols=15 Identities=33% Similarity=1.004 Sum_probs=13.0
Q ss_pred CCcCceEecc-ccccc
Q 005945 348 GEKIQWVQCE-DCSKW 362 (668)
Q Consensus 348 ge~~~WVQCD-~C~KW 362 (668)
.....||||| .|.+|
T Consensus 19 ~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 19 NDDQDAILCEASCQKW 34 (65)
T ss_dssp CTTSCEEEBTTTTCCE
T ss_pred CCCCCeEecccCcccc
Confidence 3467899999 99999
No 20
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=60.61 E-value=8 Score=32.58 Aligned_cols=41 Identities=10% Similarity=0.313 Sum_probs=33.9
Q ss_pred ccccccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeC
Q 005945 179 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 219 (668)
Q Consensus 179 R~YVL~GWs~FVrsK~LkaGDtVvF~R~e~~GkL~IGVRRa 219 (668)
..|.+.==.+++++.+|+.||.+.+.-.+.+|++++.++|-
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 34555545699999999999999988877799999999983
No 21
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.33 E-value=3.3 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.519 Sum_probs=19.6
Q ss_pred cCceEeccccccccccC---CCC-------CCCCCceeec
Q 005945 350 KIQWVQCEDCSKWRKVP---ANA-------RLPSKWTCSG 379 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP---~~~-------~lP~~W~C~m 379 (668)
...|||||.|..|--+. ... ..++.|+|..
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~ 66 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPN 66 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcC
Confidence 46899999999994321 110 0367888853
No 22
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=57.09 E-value=12 Score=31.12 Aligned_cols=31 Identities=32% Similarity=0.722 Sum_probs=22.0
Q ss_pred CcCceEecc--ccccccccC-----CC-C----CCCCCceeec
Q 005945 349 EKIQWVQCE--DCSKWRKVP-----AN-A----RLPSKWTCSG 379 (668)
Q Consensus 349 e~~~WVQCD--~C~KWRrLP-----~~-~----~lP~~W~C~m 379 (668)
....||||| .|..|--+. .. + ..|+.|||..
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~ 68 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEI 68 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCC
Confidence 456999999 999995432 11 1 4578999964
No 23
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=52.17 E-value=9.7 Score=30.86 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=22.0
Q ss_pred CcCceEecc--ccccccccCC-C--------CCCCCCceeec
Q 005945 349 EKIQWVQCE--DCSKWRKVPA-N--------ARLPSKWTCSG 379 (668)
Q Consensus 349 e~~~WVQCD--~C~KWRrLP~-~--------~~lP~~W~C~m 379 (668)
+...+|||| .|..|--+.= + ..+|+.|||..
T Consensus 20 ~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~ 61 (68)
T 2rsd_A 20 VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCEL 61 (68)
T ss_dssp CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHH
T ss_pred CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcC
Confidence 456899999 5999975541 1 24678999964
No 24
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.35 E-value=8.1 Score=37.38 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=12.6
Q ss_pred CceEecccccccccc
Q 005945 351 IQWVQCEDCSKWRKV 365 (668)
Q Consensus 351 ~~WVQCD~C~KWRrL 365 (668)
..|||||.|..|=-.
T Consensus 19 ~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHS 33 (183)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCeEECCCCCcccch
Confidence 469999999999654
No 25
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=39.79 E-value=6.8 Score=33.72 Aligned_cols=10 Identities=40% Similarity=1.444 Sum_probs=8.9
Q ss_pred eEeccccccc
Q 005945 353 WVQCEDCSKW 362 (668)
Q Consensus 353 WVQCD~C~KW 362 (668)
+||||.|..|
T Consensus 2 mi~c~~c~~w 11 (140)
T 2ku7_A 2 MMQCGKCDRW 11 (140)
T ss_dssp CCCCSCCSSC
T ss_pred ccccccCCCc
Confidence 6899999988
No 26
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=38.62 E-value=4.5 Score=44.09 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=21.2
Q ss_pred cCceEeccccccccccC---CC---CCCCCCceeecC
Q 005945 350 KIQWVQCEDCSKWRKVP---AN---ARLPSKWTCSGN 380 (668)
Q Consensus 350 ~~~WVQCD~C~KWRrLP---~~---~~lP~~W~C~mN 380 (668)
...|||||.|..|=-.. .. ...++.|+|..-
T Consensus 17 ~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C 53 (447)
T 3kv4_A 17 TRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53 (447)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHH
T ss_pred CCCeEEcCCCCcccccccCCcCcccccCCCEEECCCC
Confidence 57899999999994321 11 134588999653
No 27
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.20 E-value=37 Score=29.58 Aligned_cols=31 Identities=23% Similarity=0.682 Sum_probs=19.9
Q ss_pred cCceEeccc--cc-cccccCC-CC--CCCCCceeecC
Q 005945 350 KIQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSGN 380 (668)
Q Consensus 350 ~~~WVQCD~--C~-KWRrLP~-~~--~lP~~W~C~mN 380 (668)
...+|+||. |. .|=-+.= ++ ...++|||..-
T Consensus 46 ~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C 82 (91)
T 1weu_A 46 YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 82 (91)
T ss_dssp CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTT
T ss_pred CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCc
Confidence 357999999 77 8943321 11 23479999754
No 28
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.11 E-value=20 Score=28.81 Aligned_cols=29 Identities=21% Similarity=0.730 Sum_probs=18.5
Q ss_pred CceEeccc--cc-cccccC---CCCCCCCCceeec
Q 005945 351 IQWVQCED--CS-KWRKVP---ANARLPSKWTCSG 379 (668)
Q Consensus 351 ~~WVQCD~--C~-KWRrLP---~~~~lP~~W~C~m 379 (668)
..+|+||. |. .|=-+. ......++|||..
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~ 56 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK 56 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHH
T ss_pred CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcC
Confidence 47999999 65 894332 1122347999953
No 29
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.76 E-value=20 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.728 Sum_probs=19.6
Q ss_pred CceEeccc--cc-cccccCC-CC--CCCCCceeecC
Q 005945 351 IQWVQCED--CS-KWRKVPA-NA--RLPSKWTCSGN 380 (668)
Q Consensus 351 ~~WVQCD~--C~-KWRrLP~-~~--~lP~~W~C~mN 380 (668)
..+|+||. |. .|=-+.= ++ ...++|||..-
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C 62 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRC 62 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTT
T ss_pred CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCC
Confidence 57999999 87 7944321 12 22489999653
No 30
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=33.68 E-value=15 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.650 Sum_probs=19.8
Q ss_pred cCceEecc-ccccccccCCCCCC------------CCCceeecC
Q 005945 350 KIQWVQCE-DCSKWRKVPANARL------------PSKWTCSGN 380 (668)
Q Consensus 350 ~~~WVQCD-~C~KWRrLP~~~~l------------P~~W~C~mN 380 (668)
...||||| .|..|=-. .-+.+ .+.|+|..-
T Consensus 16 ~~~mi~Cdd~C~~WfH~-~CVglt~~~~~~i~~~~~~~~~Cp~C 58 (105)
T 2xb1_A 16 DQDAILCEASCQKWFHR-ECTGMTESAYGLLTTEASAVWACDLC 58 (105)
T ss_dssp TSCEEECTTTTCCEEEG-GGTTCCHHHHHHHHHCTTEEECCHHH
T ss_pred CCCEEEecCCccccccc-ccCCcCHHHHHhhccCCCCCEECccc
Confidence 45799998 99999433 21222 278998653
No 31
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.79 E-value=24 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.797 Sum_probs=18.1
Q ss_pred CceEeccc--cc-cccccC---CCCCCCCCceee
Q 005945 351 IQWVQCED--CS-KWRKVP---ANARLPSKWTCS 378 (668)
Q Consensus 351 ~~WVQCD~--C~-KWRrLP---~~~~lP~~W~C~ 378 (668)
..+|+||. |. .|=-+. ......++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcccCCCCCEECc
Confidence 47999999 87 794332 111223789995
No 32
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=31.77 E-value=31 Score=29.59 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.7
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE
Q 005945 192 NMQLQAGDIVTFSRLEPEGKLVM 214 (668)
Q Consensus 192 sK~LkaGDtVvF~R~e~~GkL~I 214 (668)
-.+|++||.|.|.-...+|.|.|
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~i 81 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLL 81 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEE
Confidence 57899999999977655666654
No 33
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.08 E-value=33 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=17.9
Q ss_pred hccCCCCCCEEEEEEecCCCeEEE
Q 005945 191 QNMQLQAGDIVTFSRLEPEGKLVM 214 (668)
Q Consensus 191 rsK~LkaGDtVvF~R~e~~GkL~I 214 (668)
--.+|++||.|.|.-...+|.|.|
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp EECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhhcCCCCCEEEEEEEEeCCEEEE
Confidence 357899999999977655565654
No 34
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.54 E-value=1e+02 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=32.5
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeC
Q 005945 154 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKA 219 (668)
Q Consensus 154 ~~L~v~D~~Gk~W~FRfsyw~nn~SR~YVL~GWs~FVrsK~LkaGDtVvF~R~---e~~GkL~IGVRRa 219 (668)
..+.+.|.+| ..+++.| +.. |++||+|.|... .-+|++.+-+-|.
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~ 87 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDS 87 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTT
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCc
Confidence 4688999999 6899999 222 999999998732 2466666655444
No 35
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=28.11 E-value=32 Score=29.92 Aligned_cols=29 Identities=24% Similarity=0.533 Sum_probs=18.3
Q ss_pred CceEeccccc---cccccC-CCC--CCCCCceeec
Q 005945 351 IQWVQCEDCS---KWRKVP-ANA--RLPSKWTCSG 379 (668)
Q Consensus 351 ~~WVQCD~C~---KWRrLP-~~~--~lP~~W~C~m 379 (668)
..+|+||.|. .|=-+. .++ ...+.|||..
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~ 71 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSK 71 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSH
T ss_pred CCEEEecCCCCccccCcCccCCCCcCCCCCccCCh
Confidence 4699999966 894332 112 2236899964
No 36
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=26.29 E-value=18 Score=37.85 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccchhhhhhhhhhHhhh
Q 005945 484 TCNVCLTVKRRFHTLML 500 (668)
Q Consensus 484 tcnvc~tvkrrfktlm~ 500 (668)
.|.--..|||||||+|.
T Consensus 160 I~t~s~QvqrrFKamMa 176 (375)
T 1n93_X 160 IKAGAEQIKKRFKTMMA 176 (375)
T ss_dssp HHSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 35566899999999885
No 37
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=24.71 E-value=50 Score=32.40 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=31.0
Q ss_pred cCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 005945 184 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 221 (668)
Q Consensus 184 ~GWs~FVrsK~LkaGDtVvF~R~e~~GkL~IGVRRa~~ 221 (668)
.....|.+...|..||.|.|.+..+.|.|.|.+.+...
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 35566778889999999999998666999999986543
No 38
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=23.79 E-value=1.2e+02 Score=28.26 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=33.3
Q ss_pred CceEEEEeCCCCeEEEEEEEcCCCC-------CccccccCchhhhhccCCCCCCEEEE
Q 005945 153 GLPLKVQDSKGKEWIFQFRFWPNNN-------SRMYVLEGVTPCIQNMQLQAGDIVTF 203 (668)
Q Consensus 153 G~~L~v~D~~Gk~W~FRfsyw~nn~-------SR~YVL~GWs~FVrsK~LkaGDtVvF 203 (668)
.+.|.+.|..|+.=.....-.|... .-.|||+-=..++.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHHHcCCCCCCEEeC
Confidence 4777888888877666543322111 22588863334467889999999975
No 39
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.19 E-value=42 Score=26.63 Aligned_cols=28 Identities=25% Similarity=0.815 Sum_probs=18.2
Q ss_pred CceEeccc--cc-cccccC---CCCCCCCCceee
Q 005945 351 IQWVQCED--CS-KWRKVP---ANARLPSKWTCS 378 (668)
Q Consensus 351 ~~WVQCD~--C~-KWRrLP---~~~~lP~~W~C~ 378 (668)
...|+||. |. .|=-+. ......++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECc
Confidence 57999999 66 784333 111224899995
No 40
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=21.26 E-value=1.3e+02 Score=25.61 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.8
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCCCCCCEEEE
Q 005945 154 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTF 203 (668)
Q Consensus 154 ~~L~v~D~~Gk~W~FRfsyw~nn~SR~YVL~GWs~FVrsK~LkaGDtVvF 203 (668)
..+.+.|.+| ..+++.| .+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE
Confidence 4678889988 6777777 233333 8999999999
No 41
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.68 E-value=47 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.487 Sum_probs=18.6
Q ss_pred cCceEeccccc---ccccc---CCCCCCCCCceeec
Q 005945 350 KIQWVQCEDCS---KWRKV---PANARLPSKWTCSG 379 (668)
Q Consensus 350 ~~~WVQCD~C~---KWRrL---P~~~~lP~~W~C~m 379 (668)
...+||||.|. .|=-+ .......+.|||..
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~ 51 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQ 51 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHH
T ss_pred CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCC
Confidence 44899999973 78322 11123357899864
Done!