BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005946
(668 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225463376|ref|XP_002271571.1| PREDICTED: uncharacterized protein LOC100251997 [Vitis vinifera]
gi|297740629|emb|CBI30811.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/645 (60%), Positives = 490/645 (75%), Gaps = 5/645 (0%)
Query: 24 LSLPLQHQLPRSLPASFGVQLPSTSPQIYRHAVSLLHSSATQEIVETSASGLDFVDVGYV 83
+LP++ + R + AS V+LP T + YRH +S LHS+AT+E++ETS +FV+VGY+
Sbjct: 26 FALPVRGRPTRPVVAS--VRLPLTRLRNYRHTLSPLHSTATEEVLETSKVESEFVEVGYI 83
Query: 84 YSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWIL 143
SVHGLQGEI VKP+TDFPELRF PG RWLRQQ G+ETIREV+L++GR HPGQK+WIL
Sbjct: 84 SSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVELVEGRGHPGQKTWIL 143
Query: 144 TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF 203
F GIDTVE+A+ LVGS+LL RE DRPELE+GEFY+RDL+GMRV +KETGE VGTVVNVF
Sbjct: 144 KFGGIDTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVTLKETGEPVGTVVNVF 203
Query: 204 NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 263
++GANDLL VM SV + + S + SG LVW+PFVE IVP VDMN REMQITP
Sbjct: 204 STGANDLLQVMLDPSVKTPDHTGNPKSE-TGVSGPLVWVPFVEAIVPNVDMNKREMQITP 262
Query: 264 PKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQ 323
PKGLLELNLR+ ERSKKERRQLEWK+R+KFQ+RLIAAKKKL EMEQQHVFHGFRFG+K Q
Sbjct: 263 PKGLLELNLRSHERSKKERRQLEWKQRRKFQRRLIAAKKKLHEMEQQHVFHGFRFGQKAQ 322
Query: 324 TSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCA 383
SLLA+ IVG+NSKLLQQALQNIE+ S+RW+++E ++ +L +LK+S + P +
Sbjct: 323 RSLLADQIVGVNSKLLQQALQNIELSSQRWSSSEFISTKLTKLGQRTLKVSKKCLTTPGS 382
Query: 384 RAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTL 443
+K+ +N LQ+KG HL+S+GK A+VL V++SE+ C +V +A S + LQTL
Sbjct: 383 E-EKLDSNFELQEKGLHLMSKGKMAIVLFVNDSEKHGRCSVPELVDSESAGNSTSFLQTL 441
Query: 444 LSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSR 503
LSDD+ +K E+R S+PL++V PA E+ LE LF ++DHFAFD KKVWFLE+EKLP+VS
Sbjct: 442 LSDDRISLKKEDRVSVPLIMVSPAHEVHSLENLFSNHDHFAFDPKKVWFLEDEKLPVVSN 501
Query: 504 SPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563
S +N KILMKSPWE LQ VGSGGV SLLSS NI+ NL E+GVEYI+IC+ N
Sbjct: 502 SLGGENTQKILMKSPWEILQTSVGSGGVISLLSSENILDNLSEMGVEYIEICSVNEEFVS 561
Query: 564 GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEFYATPKLNS 623
G+S+ LG V S +D+G QISE + EE F+ + SM M KL + KL+F+ PKLNS
Sbjct: 562 GHSL-LGLVSSLESDVGIQISEGIEDIEENFHMIFSMKFMSKLAKQMKKLQFHGIPKLNS 620
Query: 624 HVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
HVE V+KE++DV P +PNS EL SIYS LNACSLDKVCV+EI E
Sbjct: 621 HVEMVEKEWVDVTPTSPNSLELGCSIYSSLNACSLDKVCVVEIRE 665
>gi|224116700|ref|XP_002331856.1| predicted protein [Populus trichocarpa]
gi|222875374|gb|EEF12505.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/616 (62%), Positives = 485/616 (78%), Gaps = 6/616 (0%)
Query: 53 RHAVSLLHSSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR 112
RH++SL ATQE VETS S +FV+VGY+ +VHGLQGEISVKP+TDFPELRF+ PG R
Sbjct: 64 RHSLSL----ATQETVETSKSESEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRR 119
Query: 113 WLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPEL 172
WLRQ V G++ IREV+L++GR H G+KSWIL F GIDTV++A+ LVGSTLL RE +RPEL
Sbjct: 120 WLRQLVSGKDVIREVELVEGRGHHGRKSWILKFGGIDTVDRAKLLVGSTLLVREYERPEL 179
Query: 173 EDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSA 232
E+GEFY+RDL+GMRV++KETGE VGTVVNVF++G NDLL VM Y+S +V G+ ++ +
Sbjct: 180 EEGEFYSRDLIGMRVILKETGECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAE 239
Query: 233 SDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKK 292
+ SG L W+PFVE IVP V+MN REM+ITPPKGLLELNLR DERSKKERR+LEW+ERKK
Sbjct: 240 AGVSGHLAWVPFVEAIVPDVNMNEREMRITPPKGLLELNLRQDERSKKERRELEWRERKK 299
Query: 293 FQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKR 352
FQ+RLIAAKKKL EMEQ+HVF G R+G+K + LLA+ IVG+NSKLLQQAL+NIEI SKR
Sbjct: 300 FQRRLIAAKKKLCEMEQKHVFDGLRYGDKSKRGLLADQIVGVNSKLLQQALENIEISSKR 359
Query: 353 WNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLV 412
+ATEL++AT+ + + SSL IS E CA +K+ N LQ+KG L+S GK A+VLV
Sbjct: 360 CSATELISATRTKHIKSSLMISKE--FITCANEEKLGANFKLQEKGLSLISTGKVAIVLV 417
Query: 413 VHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQM 472
+++ E+G +P V SES+ N L LQ LSDDQ FVKIE+R S+PL+LV PA E+Q
Sbjct: 418 LNDIEKGKGDNPGVVDSESSENSLLFFLQKSLSDDQTFVKIEDRVSVPLILVCPAQEIQS 477
Query: 473 LEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVF 532
L+KLF +ND+FAFDS KVWFLEEEK+P+VS S E + KI+MKSPWE LQ+PVGSGGV
Sbjct: 478 LQKLFSNNDYFAFDSNKVWFLEEEKIPVVSSSEEEGKRHKIMMKSPWEILQSPVGSGGVI 537
Query: 533 SLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEE 592
SLLSS NI +NL ++GVEYI+IC+++ G+ + LGFV+S A+IG +I E K EE
Sbjct: 538 SLLSSVNIPENLSKMGVEYIEICSSSQNCVTGSPLLLGFVESRKAEIGIKIVEDTKDLEE 597
Query: 593 RFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSC 652
F+ + S+N M+ L I+KL+FYA PK N HVE V KE++DV+P++PNSYELRSSIYS
Sbjct: 598 SFDMIFSLNFMRLLAQQIHKLQFYAIPKPNLHVEMVGKEWVDVVPSSPNSYELRSSIYSS 657
Query: 653 LNACSLDKVCVMEITE 668
LNAC L+K+CVMEITE
Sbjct: 658 LNACPLEKICVMEITE 673
>gi|255557441|ref|XP_002519751.1| conserved hypothetical protein [Ricinus communis]
gi|223541168|gb|EEF42724.1| conserved hypothetical protein [Ricinus communis]
Length = 631
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/609 (60%), Positives = 474/609 (77%), Gaps = 3/609 (0%)
Query: 62 SATQEIV-ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG 120
S+TQEIV ET+ + L+FV+VGY+ SVHGLQGEI VKPSTDFPELRF+ PG RWLRQQ+ G
Sbjct: 24 SSTQEIVIETAKNELEFVEVGYLSSVHGLQGEICVKPSTDFPELRFSQPGRRWLRQQISG 83
Query: 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTR 180
++ I+EV+LI+GR + GQKSWIL F+GIDTVEQAR LVGSTLL RE DRPELE+G+FYTR
Sbjct: 84 KDMIQEVELIEGRGYHGQKSWILRFDGIDTVEQARQLVGSTLLVREDDRPELEEGDFYTR 143
Query: 181 DLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
DLVGMRV++KETG+ VGTVVNVF+SGA DLL VM + V EG+E+ ++ + S LV
Sbjct: 144 DLVGMRVILKETGQCVGTVVNVFDSGAGDLLQVMLCPTEGVPEGTEKLMTAETGVSSPLV 203
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAA 300
W+PFVE IVP VDM REM ITPPKGLL+LN+R+DERSKKERRQLEWKERKKFQ+RLIAA
Sbjct: 204 WVPFVEAIVPDVDMTKREMWITPPKGLLKLNIRSDERSKKERRQLEWKERKKFQRRLIAA 263
Query: 301 KKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMN 360
KKKL EMEQ+HVF G R+GEK Q S LA+ IVG+NSKLLQQALQNI I +RW TEL++
Sbjct: 264 KKKLCEMEQKHVFDGLRYGEKPQRSSLADQIVGVNSKLLQQALQNIGISFQRWGITELIS 323
Query: 361 ATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEE-G 419
AT+ +L+ SLK+S + L PCA + + +Q KG +L+S GK +VLVV+ ++ G
Sbjct: 324 ATRTKLIQRSLKLS-KKCLTPCATEESLTAYFDMQDKGLNLLSTGKVGIVLVVNEVDKNG 382
Query: 420 NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479
P V ++++ + + +LLQ LSDDQ F+K+E+RA +PLVLV P E++ L+KLF D
Sbjct: 383 TSHSPDVVDTKNSEDLAFSLLQKSLSDDQSFLKMEDRAFVPLVLVCPMQEIRSLKKLFSD 442
Query: 480 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHN 539
ND+F FD+ KVWFLEEEKLP+V+ S E ++ KILMKSPWE LQ PVGSGGV SLLS+H
Sbjct: 443 NDYFGFDTDKVWFLEEEKLPVVNSSYEEPSRCKILMKSPWEILQVPVGSGGVISLLSTHG 502
Query: 540 IIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLS 599
I + L+++ V+YI++C+ N +GN++ LG+V SC A+IG QI E + SEE F+ + S
Sbjct: 503 IPEILNKMDVKYIEVCSVGQNNVLGNALLLGYVNSCKAEIGLQIFEDTEGSEESFDMIFS 562
Query: 600 MNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLD 659
+ MK+LT ++KL+F+ K NS+VE VDKE+ D+IP++PNSY+ SSIYS LN C LD
Sbjct: 563 NSSMKRLTEEMDKLQFHTISKPNSYVELVDKEWTDIIPSSPNSYQFYSSIYSALNGCPLD 622
Query: 660 KVCVMEITE 668
K+CV+EIT+
Sbjct: 623 KICVIEITD 631
>gi|357519207|ref|XP_003629892.1| Ribosome maturation factor rimM [Medicago truncatula]
gi|355523914|gb|AET04368.1| Ribosome maturation factor rimM [Medicago truncatula]
Length = 667
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/671 (53%), Positives = 468/671 (69%), Gaps = 21/671 (3%)
Query: 12 PVFLSPSS-PRLPLSLPLQHQLPRSLPASFGVQLPSTSPQIYRHAVSLLHSSATQE--IV 68
P F + S P PL + + R P S P+ I+ H SL + T +V
Sbjct: 4 PTFTTISQRPFHPLGGIINYTFHRFKPFS-----PTKHFPIHFHFHSLKAAITTHHEPVV 58
Query: 69 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK 128
+ FVD+GYV VHG QG++ VKP+TDFPELRF+TPG RWL+Q+V+G E ++E++
Sbjct: 59 VVDDNEPRFVDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLKQKVMGGENVQEIE 118
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
L +GREH GQ WIL F GID+ E+A+ L+G+TLL E DRPELE+GEFYT DL GMRV
Sbjct: 119 LEEGREHSGQNCWILKFSGIDSAEEAKILIGATLLVTEEDRPELEEGEFYTHDLNGMRVF 178
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
MKE G+L+GTV+NVFN+GANDLL + SS +V++ + + +ASG+LV +PFVE I
Sbjct: 179 MKENGKLLGTVINVFNNGANDLLQISLDSSFDVLDKNGKPKPEEIEASGQLVLVPFVEAI 238
Query: 249 VPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREME 308
VP VDMN REM ITPPKGLLELNLR D+RSKKERRQLEWKERKKFQKRLIAAKKKLREM+
Sbjct: 239 VPDVDMNRREMHITPPKGLLELNLRFDDRSKKERRQLEWKERKKFQKRLIAAKKKLREMD 298
Query: 309 QQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMI 368
QQHVFHGF+ GEK Q SLL++ IVG+NS+LLQ+ALQ++E P+ RWNA EL++A + E I
Sbjct: 299 QQHVFHGFQCGEKEQWSLLSDQIVGVNSRLLQEALQSLEQPANRWNAAELVSAME-EKRI 357
Query: 369 SSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSE-EGNECDPHSV 427
+++IS E SL ++ K V ++++KG L+S GK A+VL++ E EG DP V
Sbjct: 358 RTVQIS-ERSLLTGSKTKLVRNIINMKEKGVELISNGKMAIVLLLKEKENEGCIYDPEVV 416
Query: 428 VSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 487
+E+T +L +LQ LLSD ++FVK+ +R S+PL+LV A ++Q L LF N+HFAFDS
Sbjct: 417 ENEATETSTLHMLQNLLSDHEKFVKVNDRVSVPLILVSSAQQIQSLRNLFTRNNHFAFDS 476
Query: 488 KK----------VWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSS 537
+K VWFLEEEKLP+VS S QNK+KILMKSPWE LQ+PVGSGG SL S
Sbjct: 477 EKVHIISSTFPFVWFLEEEKLPVVSSSLEGQNKYKILMKSPWEILQSPVGSGGFISLFSK 536
Query: 538 HNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTM 597
H+I NL +GVEY+++C R+ GNS+ +G V + A IG QIS +E F+ +
Sbjct: 537 HSITDNLINMGVEYLELCCPCERSVGGNSLLVGLVDAREAKIGIQISPTIADPDENFDMI 596
Query: 598 LSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACS 657
LSM +KKLT KL F AT K NS +E VDK+++ V + PNSYEL S+YS LNAC
Sbjct: 597 LSMEFVKKLTKQSYKLRFDATAKTNSFIESVDKDWVTVTSSTPNSYELSCSVYSSLNACP 656
Query: 658 LDKVCVMEITE 668
LDKVC++E+ E
Sbjct: 657 LDKVCIVEVRE 667
>gi|84468326|dbj|BAE71246.1| hypothetical protein [Trifolium pratense]
Length = 669
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/594 (57%), Positives = 446/594 (75%), Gaps = 4/594 (0%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+D+GYV VHG QG++ VKP+TDFPELRF+TPG RWLRQ+V+ E+++EV+L +GREH
Sbjct: 78 FIDIGYVSGVHGFQGDVRVKPNTDFPELRFSTPGRRWLRQRVMSEESVKEVELEEGREHS 137
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ WIL F GI++VE+A+ L+G+TLL E D+PELEDGEFY DL GMRV MKE G+L+
Sbjct: 138 GKNCWILKFRGIESVEEAKMLIGATLLVTEEDKPELEDGEFYAHDLNGMRVFMKENGKLL 197
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV+NVFN+GANDLL + SS +V++ + + DASG+LV +PFVE IV VDMN
Sbjct: 198 GTVINVFNTGANDLLQISLDSSFDVLDKNGQPKPEEIDASGQLVLLPFVEAIVSDVDMNK 257
Query: 257 REMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGF 316
REM ITPPKGLLE+NLR D++SKKERRQLEWKE+KKFQ+RLIAAKKKL EM+QQHVFHG+
Sbjct: 258 REMHITPPKGLLEINLRFDDKSKKERRQLEWKEKKKFQRRLIAAKKKLCEMDQQHVFHGY 317
Query: 317 RFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 376
+ GEK Q SLL++ IVG+NS+LLQ ALQ+++ P+KRWNA EL++A + E IS+LKIS E
Sbjct: 318 QCGEKEQWSLLSDQIVGVNSRLLQDALQSLQQPAKRWNAAELVSAVQ-EKHISTLKIS-E 375
Query: 377 GSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSE-EGNECDPHSVVSESTANK 435
SL ++ K V +Q+KG L+S+GK A+VL+++ E EG DP V SE+T N
Sbjct: 376 KSLLTGSKDKLVRNIIKMQEKGLELISKGKMAIVLLLNEKENEGCIYDPDVVESEATENP 435
Query: 436 SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEE 495
+L +LQ LL D +FVK+++R S+PL+LV A ++Q L LF N+HF FDS+KVWFLEE
Sbjct: 436 TLLMLQNLLCDHDKFVKVKDRLSVPLILVSSAQQLQSLRNLFARNNHFEFDSEKVWFLEE 495
Query: 496 EKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQIC 555
EKLP+VSRS E+NK+KILMKSPWE LQ+PVGSGG L + H+I NL +GVEY+++C
Sbjct: 496 EKLPVVSRSLGEENKYKILMKSPWEILQSPVGSGGFIDLFTKHSIADNLINMGVEYVEVC 555
Query: 556 TANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINK-LE 614
GNS LG V S A IG QIS +E F+ +LSM+++KKLT K L+
Sbjct: 556 CPCETTVGGNSQLLGLVNSREAKIGIQISPKIVVPDENFDMILSMDLVKKLTKQSYKLLQ 615
Query: 615 FYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
F ATPK++S VE VDK+++ + + PNSYEL SIYS LNAC LDKVC++E+ E
Sbjct: 616 FDATPKISSFVENVDKDWVTITSSIPNSYELSCSIYSSLNACPLDKVCIVEVRE 669
>gi|42568351|ref|NP_568663.2| RimM-like 16S rRNA processing protein [Arabidopsis thaliana]
gi|10177579|dbj|BAB10810.1| unnamed protein product [Arabidopsis thaliana]
gi|332008000|gb|AED95383.1| RimM-like 16S rRNA processing protein [Arabidopsis thaliana]
Length = 653
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/683 (50%), Positives = 463/683 (67%), Gaps = 47/683 (6%)
Query: 1 MHRASLVCSSYPVFLSPSSPRLPLSLPLQHQLPRSLPASFGVQLPSTSPQIYRHAVSLLH 60
M RASL+CSS + +P P S H+ PR F + P ++ + +SLL
Sbjct: 1 MLRASLLCSSTSITFTPIQLFNPNS---SHRFPR-----FELSRPVSALSRTKCHLSLLR 52
Query: 61 ----------SSATQEIVETSA-SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTP 109
S+AT E VETS+ SGLD V+VG++ VHGLQGEI +KP+TDFP+LRF+ P
Sbjct: 53 ARGKSSFLTRSTATDEAVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKP 112
Query: 110 GTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDR 169
G RWL+QQ+LG++ I EV+L++GR HP QKSWIL F G+D V+Q R LVG+TLLA + DR
Sbjct: 113 GRRWLKQQLLGQDKIDEVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDR 172
Query: 170 PELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEAS 229
PEL++GEFY+RDLVGMRV++KETG+LVGTV N+F++G NDLLHV+ SS+ V G+ +
Sbjct: 173 PELDEGEFYSRDLVGMRVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAK-- 230
Query: 230 SSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKE 289
+ +LVWIPFV+ IVP VD+ +EM ITPPKGLLE+N+R D+RSKKERRQLEWKE
Sbjct: 231 ------TNQLVWIPFVDAIVPDVDLERKEMYITPPKGLLEVNMRADDRSKKERRQLEWKE 284
Query: 290 RKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIP 349
RKK QKRLIAAKKKL EMEQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+
Sbjct: 285 RKKQQKRLIAAKKKLCEMEQKHVFDGLRFGEKSQRNLLADHILNVNSTLLQKALQSIDTS 344
Query: 350 SKRWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAM 409
SKRWN TE +NA +A + +L +S E L A + + N S ++G +L SEGK ++
Sbjct: 345 SKRWNVTEEINALRARVSECNLSVSRE-CLSFDASKENMGDNFSFLQQGQNLFSEGKVSI 403
Query: 410 VLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 469
LV+++ H N ++ L LL ++QRF+K E+RA +PLV+V P
Sbjct: 404 CLVLND---------HENEEPEGENGVVSYLHALLDEEQRFIKEEDRACVPLVIVSPEHT 454
Query: 470 MQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG 529
++ L+KLF DNDHF F+S+K+W L+EE LP+V SP E K KILMKSPWE L++PVGSG
Sbjct: 455 IEALQKLFQDNDHFGFESEKIWILKEETLPVVCSSPEEPKKHKILMKSPWEILESPVGSG 514
Query: 530 GVFSLLSSHNIIKNLDELGVEYIQI----CTANPRNAIGNSMFLGFVKSCGADIGFQISE 585
GV S+L+SH +L LG+ Y+Q+ P N M +GFV + GA+IG Q++E
Sbjct: 515 GVLSILASHGTTDSLSTLGINYLQVHSIETKPQPSQHYINPMLVGFVSARGAEIGIQVTE 574
Query: 586 YAKHSEERFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYEL 645
++ + SM +K+L K+EF A K+NSHV+ V+KE+++ +P+ PNS+E
Sbjct: 575 ESEL--KNLEMTFSMKFLKRLK---GKIEFEAVMKMNSHVQNVEKEWVESVPSEPNSFEF 629
Query: 646 RSSIYSCLNACSLD-KVCVMEIT 667
RS IY L+ CS K+C+M IT
Sbjct: 630 RSDIYRVLSECSSSAKICLMNIT 652
>gi|297794617|ref|XP_002865193.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
gi|297311028|gb|EFH41452.1| 16S rRNA processing protein RimM family [Arabidopsis lyrata subsp.
lyrata]
Length = 654
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 334/676 (49%), Positives = 454/676 (67%), Gaps = 32/676 (4%)
Query: 1 MHRASLVCSSYPVFLSPSSPRLPLSLPLQHQLPRSLPASFGVQLPSTSPQIYR---HAVS 57
M R SL+CSS + +P P P S P S + + + R +
Sbjct: 1 MLRPSLLCSSASITFTPIQLFNPNFSPHFQSFEVSRPVSALSRTKNCHFSLVRARGKSSF 60
Query: 58 LLHSSATQEIVETSA-SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQ 116
L+ S+ATQE VETS+ S LD V+VG++ VHGLQGEI +KP+TDFP+LRF+ PG RWL+Q
Sbjct: 61 LVRSTATQEAVETSSKSELDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQ 120
Query: 117 QVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE 176
Q++G+E I EV+L++GR HP QKSWIL F G+D V+Q R LVG+TLLA + DRPEL+D E
Sbjct: 121 QLMGQEKIDEVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDDDE 180
Query: 177 FYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
FY+RDLVGM+V++KETG+LVGTV N+F++G NDLLHV+ SS+ V GS + +
Sbjct: 181 FYSRDLVGMKVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGSAK--------T 232
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296
+LVWIPFV+ IVP VD+ +EM ITPPKGLLE+N+R D+RSKKERRQLEWKERKK QKR
Sbjct: 233 NQLVWIPFVDAIVPDVDLERKEMYITPPKGLLEVNMRADDRSKKERRQLEWKERKKQQKR 292
Query: 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNAT 356
LI+AKKKL E+EQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+ SKRWN
Sbjct: 293 LISAKKKLCELEQKHVFDGLRFGEKSQRNLLADHILDVNSTLLQKALQSIDTSSKRWNVI 352
Query: 357 ELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNS 416
E +N +A + +L +S E L A +K+ N S ++G L SEGK ++ LV+++
Sbjct: 353 EEINELRARVSECTLNVSRE-CLSFDASKEKMGDNFSYLQQGKSLFSEGKVSICLVLNDH 411
Query: 417 EEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKL 476
E + VVS L TLL ++Q F+K E+ A +PLV+V P ++ L+KL
Sbjct: 412 ENEQPEGENGVVS---------YLHTLLDEEQSFIKEEDHACVPLVIVSPEHTVEALQKL 462
Query: 477 FLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLS 536
F DNDHF F+++K+W L+EE LP+V SP E K KILMKSPWE L++PVGSGGV S+L+
Sbjct: 463 FQDNDHFGFEAEKIWILKEETLPVVCSSPEEPKKHKILMKSPWEILKSPVGSGGVLSILA 522
Query: 537 SHNIIKNLDELGVEYIQI----CTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEE 592
SH I +L LG++Y+Q+ P N M +GF + GA+IG Q++E + +
Sbjct: 523 SHGITDSLSSLGIDYLQVHSIETKPQPSQHYINPMLVGFASAKGAEIGIQMTEESVF--K 580
Query: 593 RFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSC 652
SM +K+L K+EF A K++SHV+KV+KE+++ +P+ PNS+E S I
Sbjct: 581 NLEMAFSMKFLKRLK---GKIEFEAVMKMHSHVQKVEKEWVESVPSEPNSFEFHSDICRV 637
Query: 653 LNACSLD-KVCVMEIT 667
L+ CS K+C+M IT
Sbjct: 638 LSECSSSAKICLMNIT 653
>gi|125553343|gb|EAY99052.1| hypothetical protein OsI_21009 [Oryza sativa Indica Group]
Length = 644
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/593 (43%), Positives = 379/593 (63%), Gaps = 26/593 (4%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
V VGYV HG++G++ V P TDFP+LRF TPG RWLR + G++ ++E +L+ GR H
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+KSWI+TF+G+D+V++AR +VGS +L + GDRP++E+ E Y+ DLVGMRV++K+TG+LV
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKAGDRPKMEEDEIYSLDLVGMRVIVKDTGKLV 195
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV VFN GA DLL VM + + + + + S SG VWIPF E+IVP +DM
Sbjct: 196 GTVGQVFNFGAGDLLQVMVGGTEDTVS-QPNSENQDSTPSGEHVWIPFAEDIVPDIDMES 254
Query: 257 REMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGF 316
REM ITPPKGLLELN R+D+RSKKERR +EWKE+K+ Q+R+IAAKK L EM+Q HV G
Sbjct: 255 REMWITPPKGLLELNARSDKRSKKERRAMEWKEKKRLQRRVIAAKKILSEMDQGHVLEGL 314
Query: 317 RFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 376
G+K Q + LA I I+ +L + A+ ++ P + + ++ + + ++I E
Sbjct: 315 LSGDKVQKASLAEQIGSIDFQLFRHAMHSVSRPIGSLSKDVFVKSSSSRKKL--MRIPYE 372
Query: 377 GSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTANKS 436
L A +S +G ++ + K A +L+ ++S+ +
Sbjct: 373 TLLNHEENA----NFASELNEGAGIIQKSKAATILITNDSDTLD---------------- 412
Query: 437 LALLQTLLSDDQRFVKI-ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEE 495
A Q LL+ + +K+ E R S+P V+V PA + ++ ++ND+F DS+KVW LEE
Sbjct: 413 -AEFQGLLNSFNKLMKVEETRGSIPFVIVCPAGHVGSVQNCLVENDYFGLDSQKVWVLEE 471
Query: 496 EKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQIC 555
KLPIVS S ++ N KIL+KSPWE LQ P G+G +FSLLSS+ I+ L+E+GVEY+QIC
Sbjct: 472 MKLPIVSMS-SKLNSRKILLKSPWEILQKPAGTGVIFSLLSSNKILDTLNEMGVEYVQIC 530
Query: 556 TANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEF 615
+ + + IG+ + G V S GAD G + + +K +E+ F+ +LSMN + K+ + KL F
Sbjct: 531 SLSNKPNIGHPLLFGAVSSFGADAGLMLRKSSKETEDDFDLILSMNHVNKMCRDVTKLRF 590
Query: 616 YATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
A + + HVE VD +++DV P A N + L + + S LN CS DKVCV+EI +
Sbjct: 591 SAQQEQHVHVEHVDGQWVDVQPEATNCHRLHAEVTSVLNYCSPDKVCVIEIVQ 643
>gi|222632582|gb|EEE64714.1| hypothetical protein OsJ_19570 [Oryza sativa Japonica Group]
Length = 644
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/593 (43%), Positives = 379/593 (63%), Gaps = 26/593 (4%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
V VGYV HG++G++ V P TDFP+LRF TPG RWLR + G++ ++E +L+ GR H
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+KSWI+TF+G+D+V++AR +VGS +L + GDRP++E+ E Y+ DLVGMRV++K+TG+LV
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRPKMEEDEIYSLDLVGMRVIVKDTGKLV 195
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV VFN GA DLL VM + + + + + S SG VWIPF E+IVP +DM
Sbjct: 196 GTVGQVFNFGAGDLLQVMVGGTEDTVS-QPNSENQGSTPSGEHVWIPFAEDIVPDIDMES 254
Query: 257 REMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGF 316
REM ITPPKGLLELN R+D+RSKKERR +EWKE+K+ Q+R+IAAKK L EM+Q HV G
Sbjct: 255 REMWITPPKGLLELNARSDKRSKKERRAMEWKEKKRLQRRVIAAKKILSEMDQGHVLEGL 314
Query: 317 RFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 376
G+K Q + LA I I+ +L + A+ ++ P + + ++ + + ++I E
Sbjct: 315 LSGDKVQKASLAEQIGSIDFQLFRHAMHSVSRPIGSLSKDVFVKSSSSRKKL--MRIPYE 372
Query: 377 GSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTANKS 436
L A +S +G ++ + K A +L+ ++S+ +
Sbjct: 373 TLLNHEENA----NFASELNEGAGIIQKSKAATILITNDSDTLD---------------- 412
Query: 437 LALLQTLLSDDQRFVKI-ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEE 495
A Q LL+ + +K+ E R S+P V+V PA + ++ ++ND+F D++KVW LEE
Sbjct: 413 -AEFQGLLNSFNKLMKVEETRGSIPFVIVCPAGHVGSVQNCLVENDYFGLDTQKVWVLEE 471
Query: 496 EKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQIC 555
KLPIVS S ++ N KIL+KSPWE LQ P G+G +FSLLSS+ I+ L+E+GVEY+QIC
Sbjct: 472 MKLPIVSMS-SKLNSRKILLKSPWEILQKPAGTGVIFSLLSSNKILDTLNEMGVEYVQIC 530
Query: 556 TANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEF 615
+ + + +G+ + G V S GAD G + + +K +E+ F+ +LSMN + K+ + KL F
Sbjct: 531 SLSNKPNLGHPLLFGAVSSFGADAGLMLRKSSKETEDDFDLILSMNHVNKMCRDVTKLRF 590
Query: 616 YATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
A + + HVE VD +++DV P A N + L + + S LN CS DKVCV+EI +
Sbjct: 591 SAQQEQHVHVEHVDGQWVDVQPEATNCHRLHAEVTSVLNYCSPDKVCVIEIVQ 643
>gi|308081839|ref|NP_001183438.1| hypothetical protein [Zea mays]
gi|238011556|gb|ACR36813.1| unknown [Zea mays]
gi|413946543|gb|AFW79192.1| hypothetical protein ZEAMMB73_309885 [Zea mays]
Length = 661
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/596 (42%), Positives = 382/596 (64%), Gaps = 30/596 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ V+VGYV HG++G++ V P TDFPELR TPGTRWLR + G++ +RE +L+ GR H
Sbjct: 92 ELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRAH 151
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+KSWI++F+G++ +++AR +VGS +L + DRPE+ED EFY+ DLVGMRV++K+TG+L
Sbjct: 152 TGKKSWIVSFDGVNNLDEARQIVGSAVLVKARDRPEIEDDEFYSLDLVGMRVIVKDTGKL 211
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSE---EASSSASDASGRLVWIPFVEEIVPIV 252
VGTV VFN G DLL V+ SS EG+ ++ + S +S VWIPF E+IVP V
Sbjct: 212 VGTVGQVFNFGGGDLLQVIMGSS----EGTAVDPDSENQDSISSREHVWIPFAEDIVPDV 267
Query: 253 DMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHV 312
DM REM+ITPPKGLLELN R+D+RSKKERR +EWK+RK+FQ+R+IA KK L EM+Q HV
Sbjct: 268 DMASREMRITPPKGLLELNSRSDKRSKKERRAMEWKDRKRFQRRVIAGKKVLSEMDQVHV 327
Query: 313 FHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLK 372
G G+K Q + LA I I+ +L + A+ + + + L N++ + + +
Sbjct: 328 LEGLVSGDKVQKASLAEQIGSIDFQLFRHAVHCVSKQIESSSMNLLANSSLSRKKVIKIP 387
Query: 373 ISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSEST 432
+LG A S+ K G ++ + K A+VLV + S+ E
Sbjct: 388 YKTLINLGDKAEH----AFSTEFKNGLDILLKSKAAIVLVRNGSDSDTE----------- 432
Query: 433 ANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWF 492
L L S + +EN+ S PL+++ PA ++ + K ++ND+F FD++KVW
Sbjct: 433 ------FLSLLNSFSELMKVVENKVSPPLIVIAPAGHVESVRKCLVENDYFGFDTQKVWV 486
Query: 493 LEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYI 552
LEE +LP+VS +E N+ K+LMKSPWE ++ P GSG +FSLL S+ I++ L+E+GV+Y
Sbjct: 487 LEEVELPVVSIC-SEGNRKKVLMKSPWEIIKKPTGSGAIFSLLLSNKILETLNEMGVQYT 545
Query: 553 QICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINK 612
QIC+++ + IG+ + G V S GAD+G Q+S+ + ++ F+ +LS++ + K+ + +
Sbjct: 546 QICSSSNKPIIGHPLLFGAVASRGADVGIQVSKTGETLDD-FDVILSIDQLNKMCRDVTQ 604
Query: 613 LEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
+ F A + N HVE VD +++ V P NS+ L + + S L++C+ DK+CVMEI E
Sbjct: 605 IRFSARSEQNVHVEHVDGQWVAVQPEVANSHRLHAEVTSVLDSCAPDKLCVMEIVE 660
>gi|242088857|ref|XP_002440261.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
gi|241945546|gb|EES18691.1| hypothetical protein SORBIDRAFT_09g028680 [Sorghum bicolor]
Length = 663
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/677 (40%), Positives = 407/677 (60%), Gaps = 57/677 (8%)
Query: 22 LPLSLPLQHQLPRSLPASFGVQLPSTSPQI--YRHAVSLLHS------------------ 61
LPL++PL LPA+ LP + R ++L S
Sbjct: 14 LPLTVPLSRYRSHVLPATCSRLLPRRRVALAPARPGAAVLSSLSDAREEEGEEEEEGDFY 73
Query: 62 --SATQEIVETSASGLD-----FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL 114
QE + G D V+VGYV HG++G++ V P TDFPELR TPGTRWL
Sbjct: 74 EEDEQQEYDDEEEQGYDGENEELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWL 133
Query: 115 RQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED 174
R + G++ +RE +L+ GR H G+KSWI++F+GID +++AR +VGS +L + GDRPE+ED
Sbjct: 134 RARAAGKQQVREFELVRGRAHTGKKSWIVSFDGIDNLDEARQIVGSAVLVKAGDRPEIED 193
Query: 175 GEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSE---EASSS 231
EFY+ DLVGMRV++K+TG++VGTV +FN G DLL VM S+ EG+ ++ +
Sbjct: 194 DEFYSLDLVGMRVIVKDTGKVVGTVGQIFNFGGGDLLQVMIGSA----EGTAVDPDSENQ 249
Query: 232 ASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERK 291
S +S VWIPF E+IVP VDM REM ITPPKGLLELN R+D+RSKKERR +EWK+RK
Sbjct: 250 DSISSREHVWIPFAEDIVPDVDMASREMWITPPKGLLELNSRSDKRSKKERRAMEWKDRK 309
Query: 292 KFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSK 351
+ Q+R+IA KK L EM+Q HV G G K Q + LA I I+ +L + A+ + +
Sbjct: 310 RLQRRVIAGKKVLSEMDQVHVLEGLVSGNKVQKASLAEQIGSIDFQLFRHAVHCVSKQIE 369
Query: 352 RWNATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVL 411
+ L N++ + + +KI + + +A+ SS K G ++ + K A+VL
Sbjct: 370 SSSKILLANSSLSRKKV--IKIPYKTLINLEDKAEHAF--SSEFKNGLEILLKSKAAIVL 425
Query: 412 VVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471
V + S+ E L L S + +EN+ S P ++V PA ++
Sbjct: 426 VRNGSDSDAE-----------------FLGLLNSFSELMKVVENQVSPPFIIVSPAGHVE 468
Query: 472 MLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGV 531
+ ++ND+F D++KVW LEE +LP+VS S +E N+ K+LMKSPWE ++ P GSGG+
Sbjct: 469 SVRNCLVENDYFGLDTEKVWVLEELELPVVSIS-SEGNRKKVLMKSPWEIIKRPAGSGGI 527
Query: 532 FSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE 591
FSLL+S+ I++ L+E+GV+Y QIC+++ + IG+ M G V S GAD+G Q+S+ ++ +E
Sbjct: 528 FSLLASNKILETLNEMGVQYTQICSSSNKPLIGHPMLFGAVASRGADVGIQLSKTSE-TE 586
Query: 592 ERFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS 651
F+ +LS++ + K+ + ++ F A + N HVE VD +++ V P NS+ L + + S
Sbjct: 587 NDFDVILSIDQLNKMCRDVTQVRFSARSEENVHVEHVDGQWVAVQPEVANSHRLHAEVTS 646
Query: 652 CLNACSLDKVCVMEITE 668
LN+C+ DK+CVMEI E
Sbjct: 647 VLNSCAPDKLCVMEIVE 663
>gi|449500620|ref|XP_004161149.1| PREDICTED: uncharacterized LOC101214658 [Cucumis sativus]
Length = 1138
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 255/462 (55%), Positives = 324/462 (70%), Gaps = 20/462 (4%)
Query: 1 MHRASLVCSSYPVFLSPSSPRLPLSLPLQHQLPRSLP------ASFGVQLPSTSPQIYRH 54
M S +CSS F S P + + R LP AS +QLP + H
Sbjct: 109 MQSTSPLCSSTSFF--HSFPNISILNRCSQLFRRRLPLTCKGSASLILQLPLYHLHSFAH 166
Query: 55 AVSLLHSSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL 114
+ A+ EI+ET + FV++GY+ +VHG +GE+ VKP TDFPELRF+TPGTRWL
Sbjct: 167 SQPSRRRVASSEILETVEAPSGFVEIGYISNVHGTEGEVRVKPITDFPELRFSTPGTRWL 226
Query: 115 RQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED 174
+QQV GRE IREV L DGREHPG+KSWIL F GIDT +QA+ L+GSTLL +E DRPELE+
Sbjct: 227 KQQVSGREEIREVDLEDGREHPGRKSWILKFIGIDTADQAKLLIGSTLLVKEEDRPELEE 286
Query: 175 GEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 234
GEFY+RDLVGM V++KET + +GTVVNVF+SG DLLHVM SS ++++ S +S +
Sbjct: 287 GEFYSRDLVGMSVILKETSQSLGTVVNVFDSGGADLLHVMLNSSEDILDTSGNPTSIETR 346
Query: 235 ASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQ 294
SGRL+WIPFVE IVPIVD+ REM+ITPPKGLLELN ++DERSKKERRQLEWKERKKFQ
Sbjct: 347 VSGRLIWIPFVEAIVPIVDLQRREMKITPPKGLLELNFQSDERSKKERRQLEWKERKKFQ 406
Query: 295 KRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWN 354
K L+AAKKKL EMEQ+HVF GF+FGEK Q LLA+ IVGINSKLLQ+ALQ+IEIP++R
Sbjct: 407 KCLVAAKKKLSEMEQEHVFDGFKFGEKDQGKLLADQIVGINSKLLQKALQDIEIPTRRLT 466
Query: 355 ATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVH 414
EL +A+K + ++L IS + A +++ T+++LQK G L+S GK A+VLVV+
Sbjct: 467 VNELFDASKLVKVQNTLGISDRCVIS-GANEEELGTHANLQKNGLDLISSGKIAIVLVVN 525
Query: 415 N----SEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVK 452
+ S G CD +++ A+ SL LLSDD+RF K
Sbjct: 526 DEGWYSNLGLVCD----IADHPASSSLP---DLLSDDRRFAK 560
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 173/226 (76%)
Query: 440 LQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLP 499
LQ +LSD + +IE+R +PL+LV A + +EKLF+DND+FAFDS+K+WFL+EE+LP
Sbjct: 911 LQKVLSDLHQDYEIEDRPYVPLILVCSASTIHSIEKLFVDNDYFAFDSEKIWFLKEERLP 970
Query: 500 IVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 559
+VS EQ+KFKILMKSPWE LQ+PVGSGGV +LLSS NI++ L ELG+EY++IC++N
Sbjct: 971 VVSNVVDEQSKFKILMKSPWEILQSPVGSGGVINLLSSPNILERLTELGMEYVEICSSNH 1030
Query: 560 RNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEFYATP 619
RNA NS+ LG+ SC A++G Q+ + E+ F+ + SMN ++KL I+K +FYA P
Sbjct: 1031 RNAGMNSLLLGYTHSCSANVGIQLHKGNGDFEKSFDLIFSMNFIRKLMKQIDKPQFYAIP 1090
Query: 620 KLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVME 665
K N+HVEKV+KE++++ P++PNSY+L SSI+S L+ CS D++ ME
Sbjct: 1091 KSNAHVEKVEKEWVELSPSSPNSYQLYSSIFSWLDECSFDEIFTME 1136
>gi|357132538|ref|XP_003567886.1| PREDICTED: uncharacterized protein LOC100844980 [Brachypodium
distachyon]
Length = 661
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/597 (40%), Positives = 374/597 (62%), Gaps = 30/597 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V+VGYV HG++G++ V P TDFP+LRF TPG RWLR + G+ +RE L+ G+ H
Sbjct: 91 DMVEVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKMQVREFDLVRGKAH 150
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+K+WI+ F+G+D++++AR +VGS +L + DRPE+E+ E Y+RDLVGM V++K+TG+L
Sbjct: 151 TGKKAWIVRFDGVDSLDEARQIVGSAILVKSEDRPEMEEDEIYSRDLVGMSVIVKDTGKL 210
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV VFN G DLL VM S+ + ++ + E S S VWIPF E+IVP +DM
Sbjct: 211 VGTVAQVFNFGGGDLLQVMVGSAESAVQPNSENQDST--PSREHVWIPFAEDIVPDIDME 268
Query: 256 GREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHG 315
REM ITPPKGLLE+N R ERSKKERR ++WKE+KK Q+R+ AAKK L+EMEQ H+ G
Sbjct: 269 SREMWITPPKGLLEIN-RRPERSKKERRTMDWKEKKKLQRRITAAKKILQEMEQGHILEG 327
Query: 316 FRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATE---LMNATKAELMISSLK 372
G+K + + LA I I+ +L + A+ + SK+ ++T L+N++ + ++
Sbjct: 328 LLSGDKLEKASLAEQIGSIDFQLFKHAMHCV---SKQIDSTSTNVLVNSSSPRKNV--MR 382
Query: 373 ISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSEST 432
I + + + K+V +N G ++ + K A++LV C V+
Sbjct: 383 IPYKTLMNHGEKGKQVFSNEF--NIGREILRKSKAAIILV-------TSCSDSDVLD--- 430
Query: 433 ANKSLALLQTLLSDDQRFVKI-ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVW 491
A + LLS +K+ EN S P ++V PA + + ++ND+F FD++KVW
Sbjct: 431 -----AEFRKLLSSFSELMKVDENHLSPPFIIVSPADHVDSVRNYLVENDYFGFDTQKVW 485
Query: 492 FLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEY 551
LEE KLP+V S ++K KIL+KSPWE LQ P G+G +FS LSS+ I+ L+ +G+EY
Sbjct: 486 VLEEMKLPVVGLSSELKSK-KILLKSPWEILQRPAGTGAIFSSLSSNKILDALNTMGIEY 544
Query: 552 IQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHIN 611
+QIC+ + +G+ + G S G D+G ++ + + +++ F+ LS++ + K+ ++
Sbjct: 545 VQICSLSGGLVLGHPLLFGTASSRGVDVGIKLHKTSNKTDDHFDLFLSIDHLNKMCRDVS 604
Query: 612 KLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
K+ F A P+ + HVE D++++ V P NS+ L + + S L++CS +K+CV+EI E
Sbjct: 605 KVRFSAHPEKHEHVEHADRQWVAVQPEMVNSHRLITDVSSVLDSCSPEKLCVIEIVE 661
>gi|449459390|ref|XP_004147429.1| PREDICTED: uncharacterized protein LOC101214658 [Cucumis sativus]
Length = 846
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/399 (58%), Positives = 300/399 (75%), Gaps = 20/399 (5%)
Query: 62 SATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR 121
+A+ EI+ET + FV++GY+ +VHG +GE+ VKP TDFPELRF+TPGTRWL+QQV GR
Sbjct: 5 TASSEILETVEAPSGFVEIGYISNVHGTEGEVRVKPITDFPELRFSTPGTRWLKQQVSGR 64
Query: 122 ETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRD 181
E IREV L DGREHPG+KSWIL F GIDT +QA+ L+GSTLL +E DRPELE+GEFY+RD
Sbjct: 65 EEIREVDLEDGREHPGRKSWILKFIGIDTADQAKLLIGSTLLVKEEDRPELEEGEFYSRD 124
Query: 182 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVW 241
LVGM V++KET + +GTVVNVF+SG DLLHVM SS ++++ S +S + SGRL+W
Sbjct: 125 LVGMSVILKETSQSLGTVVNVFDSGGADLLHVMLNSSEDILDTSGNPTSIETRVSGRLIW 184
Query: 242 IPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAK 301
IPFVE IVPIVD+ REM+ITPPKGLLELN ++DERSKKERRQLEWKERKKFQK L+AAK
Sbjct: 185 IPFVEAIVPIVDLQRREMKITPPKGLLELNFQSDERSKKERRQLEWKERKKFQKCLVAAK 244
Query: 302 KKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNA 361
KKL EMEQ+HVF GF+FGEK Q LLA+ IVGINSKLLQ+ALQ+IEIP+ ++ +L+
Sbjct: 245 KKLSEMEQEHVFDGFKFGEKDQGKLLADQIVGINSKLLQKALQDIEIPNTVYSIYKLL-- 302
Query: 362 TKAELMISSLKISGEGSLGPCARA-------KKVVTNSSLQKKGNHLVSEGKKAMVLVVH 414
T EL +S + + +LG R +++ T+++LQK G L+S GK A+VLVV+
Sbjct: 303 TVNELFDASKLVKVQNTLGISDRCVISGANEEELGTHANLQKNGLDLISSGKIAIVLVVN 362
Query: 415 N----SEEGNECDPHSVVSESTANKSLALLQTLLSDDQR 449
+ S G CD +++ A+ SL LLSDD+R
Sbjct: 363 DEGWYSNLGLVCD----IADHPASSSLP---DLLSDDRR 394
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 173/226 (76%)
Query: 440 LQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLP 499
LQ +LS+ + +IE+R +PL+LV A + +EKLF+DND+FAFDS+K+WFL+EE+LP
Sbjct: 619 LQKVLSNLHQDYEIEDRPYVPLILVCSASTIHSIEKLFVDNDYFAFDSEKIWFLKEERLP 678
Query: 500 IVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 559
+VS EQ+KFKILMKSPWE LQ+PVGSGGV +LLSS NI++ L ELG+EY++IC++N
Sbjct: 679 VVSNVVDEQSKFKILMKSPWEILQSPVGSGGVINLLSSPNILERLTELGMEYVEICSSNH 738
Query: 560 RNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKLEFYATP 619
RNA NS+ LG+ SC A++G Q+ + E+ F+ + SMN ++KL I+K +FYA P
Sbjct: 739 RNAGMNSLLLGYTHSCSANVGIQLHKGNGDFEKSFDLIFSMNFIRKLMKQIDKPQFYAIP 798
Query: 620 KLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVME 665
K N+HVEKV+KE++++ P++PNSY+L SSI+S L+ CS D++ ME
Sbjct: 799 KSNAHVEKVEKEWVELSPSSPNSYQLYSSIFSWLDECSFDEIFTME 844
>gi|15292693|gb|AAK92715.1| unknown protein [Arabidopsis thaliana]
gi|20465803|gb|AAM20390.1| unknown protein [Arabidopsis thaliana]
Length = 352
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 20/366 (5%)
Query: 307 MEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAEL 366
MEQ+HVF G RFGEK Q +LLA+HI+ +NS LLQ+ALQ+I+ SKRWN TE +NA +A +
Sbjct: 1 MEQKHVFDGLRFGEKSQRNLLADHILNVNSTLLQKALQSIDTSSKRWNVTEEINALRARV 60
Query: 367 MISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHS 426
+L +S E L A + + N S ++G +L SEGK ++ LV+++ H
Sbjct: 61 SECNLSVSRE-CLSFDASKENMGDNFSFLQQGQNLFSEGKVSICLVLND---------HE 110
Query: 427 VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFD 486
N ++ L LL ++QRF+K E+RA +PLV+V P ++ L+KLF DNDHF F+
Sbjct: 111 NEEPEGENGVVSYLHALLDEEQRFIKEEDRACVPLVIVSPEHTIEALQKLFQDNDHFGFE 170
Query: 487 SKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDE 546
S+K+W L+EE LP+V SP E K KILMKSPWE L++PVGSGGV S+L+SH +L
Sbjct: 171 SEKIWILKEETLPVVCSSPEEPKKHKILMKSPWEILESPVGSGGVLSILASHGTTDSLST 230
Query: 547 LGVEYIQI----CTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNV 602
LG+ Y+Q+ P N M +GFV + GA+IG Q++E ++ + SM
Sbjct: 231 LGINYLQVHSIETKPQPSQHYINPMLVGFVSARGAEIGIQVTEESEL--KNLEMTFSMKF 288
Query: 603 MKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLD-KV 661
+K+L K+EF A K+NSHV+ V+KE+++ +P+ PNS+E RS IY L+ CS K+
Sbjct: 289 LKRLK---GKIEFEAVMKMNSHVQNVEKEWVESVPSEPNSFEFRSDIYRVLSECSSSAKI 345
Query: 662 CVMEIT 667
C+M IT
Sbjct: 346 CLMNIT 351
>gi|224033115|gb|ACN35633.1| unknown [Zea mays]
Length = 393
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/415 (38%), Positives = 251/415 (60%), Gaps = 23/415 (5%)
Query: 254 MNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVF 313
M REM+ITPPKGLLELN R+D+RSKKERR +EWK+RK+FQ+R+IA KK L EM+Q HV
Sbjct: 1 MASREMRITPPKGLLELNSRSDKRSKKERRAMEWKDRKRFQRRVIAGKKVLSEMDQVHVL 60
Query: 314 HGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKI 373
G G+K Q + LA I I+ +L + A+ + + + L N++ + + +
Sbjct: 61 EGLVSGDKVQKASLAEQIGSIDFQLFRHAVHCVSKQIESSSMNLLANSSLSRKKVIKIPY 120
Query: 374 SGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPHSVVSESTA 433
+LG A S+ K G ++ + K A+VLV + S+ E
Sbjct: 121 KTLINLGDKAEH----AFSTEFKNGLDILLKSKAAIVLVRNGSDSDTE------------ 164
Query: 434 NKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFL 493
L L S + +EN+ S PL+++ PA ++ + K ++ND+F FD++KVW L
Sbjct: 165 -----FLSLLNSFSELMKVVENKVSPPLIVIAPAGHVESVRKCLVENDYFGFDTQKVWVL 219
Query: 494 EEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQ 553
EE +LP+VS +E N+ K+LMKSPWE ++ P GSG +FSLL S+ I++ L+E+GV+Y Q
Sbjct: 220 EEVELPVVSIC-SEGNRKKVLMKSPWEIIKKPTGSGAIFSLLLSNKILETLNEMGVQYTQ 278
Query: 554 ICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNHINKL 613
IC+++ + IG+ + G V S GAD+G Q+S+ + ++ F+ +LS++ + K+ + ++
Sbjct: 279 ICSSSNKPIIGHPLLFGAVASRGADVGIQVSKTGETLDD-FDVILSIDQLNKMCRDVTQI 337
Query: 614 EFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEITE 668
F A + N HVE VD +++ V P NS+ L + + S L++C+ DK+CVMEI E
Sbjct: 338 RFSARSEQNVHVEHVDGQWVAVQPEVANSHRLHAEVTSVLDSCAPDKLCVMEIVE 392
>gi|388501374|gb|AFK38753.1| unknown [Lotus japonicus]
Length = 263
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 143/263 (54%), Positives = 190/263 (72%), Gaps = 3/263 (1%)
Query: 408 AMVLVVHNSEEGNEC--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVL 465
A+VL++ N +E + C DPH +E+T N SL +LQ LLSD ++ VK+++RAS+PL+LV
Sbjct: 2 AIVLLL-NEKENHGCVSDPHIDQNEATDNSSLHVLQKLLSDHEKIVKVKDRASVPLILVS 60
Query: 466 PALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAP 525
A ++Q L LF +N+HF FDS+KVWFLEEEKLP+VS QNK+KILMKSPWE L++P
Sbjct: 61 SAQQIQSLRNLFTNNNHFEFDSEKVWFLEEEKLPVVSSLLEGQNKYKILMKSPWEILESP 120
Query: 526 VGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISE 585
VGSGG+ SL S H I +L +GVEYI++C N R + GNS+ LG V S A IG QIS
Sbjct: 121 VGSGGLISLFSKHGIADDLMNMGVEYIELCCPNERISGGNSLLLGLVSSRTAKIGIQISP 180
Query: 586 YAKHSEERFNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYEL 645
+E F+ +LSM+ +KKLT NKL+F ATPK NS+VEKVDK+++ V PNSYEL
Sbjct: 181 TIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDKDWVTVTSTTPNSYEL 240
Query: 646 RSSIYSCLNACSLDKVCVMEITE 668
SIY+ LN CSLD+VC++++ E
Sbjct: 241 SCSIYNSLNLCSLDQVCMVQVRE 263
>gi|115465483|ref|NP_001056341.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|51854276|gb|AAU10657.1| unknown protein [Oryza sativa Japonica Group]
gi|113579892|dbj|BAF18255.1| Os05g0566300 [Oryza sativa Japonica Group]
gi|215704607|dbj|BAG94235.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 304
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 155/209 (74%), Gaps = 1/209 (0%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
V VGYV HG++G++ V P TDFP+LRF TPG RWLR + G++ ++E +L+ GR H
Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+KSWI+TF+G+D+V++AR +VGS +L + GDRP++E+ E Y+ DLVGMRV++K+TG+LV
Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRPKMEEDEIYSLDLVGMRVIVKDTGKLV 195
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV VFN GA DLL VM + + + + + S SG VWIPF E+IVP +DM
Sbjct: 196 GTVGQVFNFGAGDLLQVMVGGTEDTVS-QPNSENQGSTPSGEHVWIPFAEDIVPDIDMES 254
Query: 257 REMQITPPKGLLELNLRTDERSKKERRQL 285
REM ITPPKGLLELN R+D+RSKKERR +
Sbjct: 255 REMWITPPKGLLELNARSDKRSKKERRAM 283
>gi|302754616|ref|XP_002960732.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
gi|300171671|gb|EFJ38271.1| hypothetical protein SELMODRAFT_451035 [Selaginella moellendorffii]
Length = 604
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 240/491 (48%), Gaps = 41/491 (8%)
Query: 109 PGTRWLRQQVLGRETIREVKLIDGREHPGQ-KSWILTFEGIDTVEQARPLVGSTLLAREG 167
PG RW++ G ETI V L+ GR G+ W+LT + +D+VE+A +G+T+L +
Sbjct: 24 PGKRWMKISERGEETIECVDLVSGRNRAGKLPCWLLTLKNVDSVEKASKYIGATMLVKRD 83
Query: 168 DRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEE 227
+RP LE+GEFY DL+GM V ++ + E +GT+ ++ N GA+DLL V +
Sbjct: 84 ERPALEEGEFYIPDLIGMDVFVQSSMENIGTIADMCNFGASDLLRV-------------Q 130
Query: 228 ASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEW 287
+ ++S G L+WIPFVE IVP+VDM R + + PP+GLLELN + K E R+ E
Sbjct: 131 RNPASSVGEGPLIWIPFVEAIVPVVDMEQRRVIVDPPEGLLELNTPAKRKEKAEARKEEV 190
Query: 288 KERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIE 347
K +K Q R KK L + +Q H+ G GE+ + L ++ I+ K LQ +
Sbjct: 191 KAMRKLQMRKSGLKKSLIKSKQDHLLAGLSVGEQEERDSLLKELLNIDFKALQVSFVKAC 250
Query: 348 IPSKRWNATELMNATK-AEL-MISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEG 405
SK N L TK E+ ++S ++ G + + K+G +++
Sbjct: 251 ERSKT-NECRLSGFTKIPEIPLVSKQELERWMKEGTYTGDGETNSGKGYWKRGLDVIASN 309
Query: 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASM------ 459
+ A+ ++ +++G++ +K + LQ L Q IEN A++
Sbjct: 310 RVAVASLIRPNDDGDQ----------KLDKQKSRLQLLA---QHLRTIENLATLEFPGDV 356
Query: 460 ---PLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK 516
P + + ++ + L + + F S +V + E +P + T +IL
Sbjct: 357 CQIPWFICTSSDLIEPIRSLLDEEEFFGLQSTQVCVITVETVPCFDTN-TVAGDHQILRM 415
Query: 517 SPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSC 575
SPW+ LQ+ G GGV L++ + E G++Y+Q+ A I + G+ ++
Sbjct: 416 SPWKLLQSVTGDGGVLKALATEGLTSEFAEKGLDYLQVLDDPTSQARIADPFLFGYAEAQ 475
Query: 576 GADIGFQISEY 586
+++ Q E+
Sbjct: 476 ASELTIQTVEW 486
>gi|168032186|ref|XP_001768600.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680099|gb|EDQ66538.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 139/208 (66%), Gaps = 16/208 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
DFV++G V HG+ GE+ ++ STDFPE RF TPGTRW+++ +G+ +I EV+LI+GRE
Sbjct: 2 DFVEIGIVAETHGVYGELRIRSSTDFPEERFETPGTRWIKKMRMGKPSITEVELIEGRET 61
Query: 136 PG-QKSWILTFEGIDTVEQARPLVGSTLLAREGDRP-ELEDGEFYTRDLVGMRVVMKETG 193
G Q SW++ +G+DT+E+A G+T+L R +RP LE+ E Y DL+GM VV++ET
Sbjct: 62 IGKQTSWLVRLKGVDTLEKASEFQGATMLIRADERPVSLEEDEDYIPDLLGMDVVIQETK 121
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E +GT+V+V NSGA+DLL V + D +WIPFV+EIVP+VD
Sbjct: 122 ETIGTIVDVHNSGASDLLRVQLTKPIR-----------GKDVR---IWIPFVKEIVPVVD 167
Query: 254 MNGREMQITPPKGLLELNLRTDERSKKE 281
++ ++I+PP GLL+LN+ + S+KE
Sbjct: 168 ISSNRVEISPPDGLLDLNVPKEGPSRKE 195
>gi|119486516|ref|ZP_01620574.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
gi|119456418|gb|EAW37549.1| 16S rRNA-processing protein [Lyngbya sp. PCC 8106]
Length = 203
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 19/207 (9%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL GE+ V P+TDFPE RF PGTRWL Q G+ + ++L++GR+
Sbjct: 3 EWIEIGKIVAAQGLDGEVRVNPNTDFPE-RFLEPGTRWLLQP--GQSEPQPIELLEGRQI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ ++L EGI+ EQA L STL + DRP LE+ EFY DL+G+ V + T E+
Sbjct: 60 PGRSLYVLELEGIENREQAEALRNSTLFVSKSDRPHLEENEFYLVDLIGLEVFNQLTKEV 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSE---EASSSASDAS----------GRLVWI 242
+G V+++ +G NDLL V YSS +E SE + S++D S + V I
Sbjct: 120 IGVVISLVPAG-NDLLEVELYSS--TLEPSEIPLDPDQSSADVSPTRRKKRKSKPKTVLI 176
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLLE 269
PFV+EIVP+VD+N ++ITPP GL+E
Sbjct: 177 PFVKEIVPVVDLNKNRVEITPPVGLIE 203
>gi|434392901|ref|YP_007127848.1| 16S rRNA processing protein RimM [Gloeocapsa sp. PCC 7428]
gi|428264742|gb|AFZ30688.1| 16S rRNA processing protein RimM [Gloeocapsa sp. PCC 7428]
Length = 196
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 18/211 (8%)
Query: 60 HSSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL 119
H A +E +SG ++++G + + GL GE+ V P TDFPE RF PGTRWL
Sbjct: 4 HKGAKDAKLEQESSG--WLEIGRIVAPQGLNGEVRVYPDTDFPE-RFEQPGTRWLLCS-- 58
Query: 120 GRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYT 179
E R ++L+ GR G+ +++ F G++ +QA L G LL RE DRP L + E++
Sbjct: 59 QDEEPRPIELLSGRYLAGKNLYVVEFLGVENRDQAEALRGCKLLVRESDRPVLGEDEYHV 118
Query: 180 RDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL 239
DLVG+ V+M+E+G +G VV+V +G NDLL V Y +D + R
Sbjct: 119 LDLVGLEVIMQESGAKIGAVVDVLPAG-NDLLEVKLY------------QDPIADNNSRT 165
Query: 240 VWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
V IPFV+EIVP+VD+ R ++ITPP GL+E+
Sbjct: 166 VLIPFVKEIVPVVDLQARYVEITPPPGLMEI 196
>gi|427718048|ref|YP_007066042.1| 16S rRNA processing protein RimM [Calothrix sp. PCC 7507]
gi|427350484|gb|AFY33208.1| 16S rRNA processing protein RimM [Calothrix sp. PCC 7507]
Length = 220
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 120/196 (61%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + G+ GE+ V P +DFPE RF PG RWL + G + ++L+ GR
Sbjct: 40 DWLEIGKIVAPQGMSGEVRVYPDSDFPE-RFEVPGKRWLLRP--GETAPQPIELLGGRYI 96
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ GI T +Q+ L G L+ DRP+L +GE+YT DLVG+ V ++ +G+L
Sbjct: 97 DGKNLYVVKLAGIVTRDQSEALRGCKLMVLASDRPKLAEGEYYTPDLVGLEVFLQASGQL 156
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV++VF++G +DLL V + S A D + V IPFVE I P+VD+
Sbjct: 157 VGTVIDVFSAG-HDLLEVKLHPSF------------AGDQKQKTVLIPFVEAIAPVVDLQ 203
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLLE+N
Sbjct: 204 ARRVEITPPSGLLEIN 219
>gi|87301734|ref|ZP_01084574.1| 16S rRNA-processing protein [Synechococcus sp. WH 5701]
gi|87283951|gb|EAQ75905.1| 16S rRNA-processing protein [Synechococcus sp. WH 5701]
Length = 192
Score = 150 bits (378), Expect = 3e-33, Method: Composition-based stats.
Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 22/204 (10%)
Query: 66 EIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIR 125
E+V + + ++ VG V + GLQGE+ V P TDFPE RFT PG RWLR+ +E R
Sbjct: 10 EMVSEADAPEAWLVVGKVVAAQGLQGELRVVPRTDFPE-RFTRPGQRWLRR---AQEPAR 65
Query: 126 EVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
V+L+ GR+ PG++ +++ EG+ T E+A LV LL GDRP L++GEF+ DL G+
Sbjct: 66 AVRLLSGRQLPGRELFVVRLEGVGTREEAEALVHQDLLVEAGDRPRLQEGEFHLLDLQGL 125
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
+V + GE++GTVV++ ++G NDLL V S R IPFV
Sbjct: 126 QVRLAPHGEVIGTVVDLIHAG-NDLLEV-----------------ELSGEQPRRALIPFV 167
Query: 246 EEIVPIVDMNGREMQITPPKGLLE 269
E IVP VD+ G ++ITPP GLL+
Sbjct: 168 EAIVPRVDIAGGWLEITPPPGLLD 191
>gi|300865592|ref|ZP_07110369.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
gi|300336407|emb|CBN55519.1| Ribosome maturation factor rimM [Oscillatoria sp. PCC 6506]
Length = 210
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 122/212 (57%), Gaps = 22/212 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+V++G + + GL GE+ V P++DFPE RF PG RW+ Q G+ ++ + GR
Sbjct: 3 DWVEIGTIVAPQGLNGEVRVYPNSDFPE-RFLEPGQRWM--QRPGKAEPEPIEFLGGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ + + G++ +++A L G L DRP LE+GEFY RDL+G++V ++TGE+
Sbjct: 60 PGKGIYAVQLAGVENIDEAEALRGCQLFVSASDRPHLEEGEFYVRDLIGLQVFYQQTGEM 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSS---VNVIEGSEEASSSASDASGR-------------- 238
+GTVV++ +G ND+L V N++E A+ S R
Sbjct: 120 LGTVVDIIPAG-NDILEVELQQKPEPANILEEESATGQVATHPSQRRSKKQKERPLKSKS 178
Query: 239 -LVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
V IPFV+EIVPIV++ R ++ITPP GLLE
Sbjct: 179 KTVLIPFVQEIVPIVEIGQRRIEITPPPGLLE 210
>gi|428212843|ref|YP_007085987.1| 16S rRNA processing protein RimM [Oscillatoria acuminata PCC 6304]
gi|428001224|gb|AFY82067.1| 16S rRNA processing protein RimM [Oscillatoria acuminata PCC 6304]
Length = 230
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 115/196 (58%), Gaps = 3/196 (1%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + V GL GE+ V PSTDFPE RF PG RWL+ + T + V+L+ GR
Sbjct: 37 EWIEIGKIIGVQGLNGEVRVYPSTDFPE-RFEEPGQRWLKYP--NQSTPQSVELVQGRLI 93
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +I+ G+ QA L G L EGDRP LE+ E+Y +DL+G+ + + TGE
Sbjct: 94 ENKGIFIVQLAGVSDRNQAEALRGCVFLIPEGDRPHLEEDEYYIQDLIGLVAIDQRTGEE 153
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTVV + +G + L + + + + SE + S + IPFV+EIVPIVDM
Sbjct: 154 IGTVVEILTAGHDILAIKPPVAPLEIPDISETSDPPPKRKSQPNILIPFVKEIVPIVDMA 213
Query: 256 GREMQITPPKGLLELN 271
R M+I PP GLLE+N
Sbjct: 214 NRRMEINPPPGLLEVN 229
>gi|427420076|ref|ZP_18910259.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 7375]
gi|425762789|gb|EKV03642.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 7375]
Length = 194
Score = 144 bits (364), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 9/199 (4%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI 130
S +D++ +G + HGL GE+ V P +DFPE RF PG RWL + G +KL+
Sbjct: 5 SQPPIDWLTIGRIVGAHGLNGEVRVYPDSDFPE-RFEQPGERWLLKP--GAVNPEPIKLV 61
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
GR G+ +IL GI+ QA L + LL DR LE GEF+ +L+G+ V+++
Sbjct: 62 KGRFQEGKGLYILKLAGINYRNQAEVLRDAQLLISADDRLPLEPGEFHVGELMGLAVILQ 121
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
ETGE +G+V++V+ +G NDLL V S + EEA+ R V IPFVE IVP
Sbjct: 122 ETGEQIGSVIDVYRAG-NDLLEVALVS-----DQPEEATKDNGQIKARTVLIPFVEAIVP 175
Query: 251 IVDMNGREMQITPPKGLLE 269
+VD+ ++ITPP GL++
Sbjct: 176 VVDLTQGRVEITPPDGLID 194
>gi|148238537|ref|YP_001223924.1| 16S rRNA-processing protein RimM [Synechococcus sp. WH 7803]
gi|166226485|sp|A5GI62.1|RIMM_SYNPW RecName: Full=Ribosome maturation factor RimM
gi|147847076|emb|CAK22627.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
WH 7803]
Length = 175
Score = 144 bits (363), Expect = 1e-31, Method: Composition-based stats.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V +V GL+GE+ V P++DFPE RFT PG+RWL+ + + RE++L GR+
Sbjct: 5 DWLPVGKVVAVQGLKGELRVNPASDFPE-RFTEPGSRWLKAR---GQAPREIELTSGRQL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G+++ + A LVG TL+ DRPEL +GEF+ DLVG+ + G+
Sbjct: 61 PGKSVFVVRFAGVESRDAAEALVGQTLMVPADDRPELAEGEFHLLDLVGLEARLSADGDA 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL V+E + GR + IPFVE IVP V +
Sbjct: 121 IGTVKDLI-SGGNDLL---------VLERPD----------GRTLMIPFVEAIVPDVHLE 160
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 161 QGWLRLTPPPGLLEL 175
>gi|88808142|ref|ZP_01123653.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
gi|88788181|gb|EAR19337.1| 16S rRNA-processing protein [Synechococcus sp. WH 7805]
Length = 190
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 112/194 (57%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG V GL+GE+ V P++DFPE RFT PG RWL+ Q RE++L GR+ P
Sbjct: 21 WLPVGKVVGAQGLRGELRVNPASDFPE-RFTQPGPRWLQTQ---GSPPREIELTSGRQQP 76
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I+ F+GID A LVG TLL R DRP+LE+GEF+ DLVG+ + E +
Sbjct: 77 GKSLFIVRFKGIDNRSSAEALVGQTLLVRADDRPQLEEGEFHLLDLVGLEARLSREAEAI 136
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV ++ SG NDLL + + GR + +PFVE IVP V++
Sbjct: 137 GTVTDLI-SGGNDLLEI-------------------TRPDGRKLLVPFVEAIVPEVNLQD 176
Query: 257 REMQITPPKGLLEL 270
+ +TPP GLLEL
Sbjct: 177 GWILLTPPPGLLEL 190
>gi|409994079|ref|ZP_11277200.1| 16S rRNA-processing protein RimM [Arthrospira platensis str.
Paraca]
gi|291567884|dbj|BAI90156.1| probable 16S rRNA processing protein [Arthrospira platensis
NIES-39]
gi|409935071|gb|EKN76614.1| 16S rRNA-processing protein RimM [Arthrospira platensis str.
Paraca]
Length = 212
Score = 143 bits (360), Expect = 3e-31, Method: Composition-based stats.
Identities = 80/215 (37%), Positives = 126/215 (58%), Gaps = 29/215 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL G++ V P++DFPE RF PGTRWL++ G+ V+L+ GR
Sbjct: 3 DWIEIGKIVAAQGLDGQMRVYPNSDFPE-RFIEPGTRWLQKP--GQNEPSPVELLGGRFI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ + + G++T E+A L S L +EGDRP LED EFY DL+G+ V ++T ++
Sbjct: 60 PGKGLYAIEMVGVETREEAEALRDSRLFIQEGDRPYLEDNEFYVLDLIGLEVFNQDTQDI 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASG------------------ 237
+GTV++V +G NDLL V +N SE+ ++ +
Sbjct: 120 IGTVIDVIPAG-NDLLEV----QLNFTPTSEDLAADTQRQAKLQNIPKNKRRKRHFQTKA 174
Query: 238 ---RLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
+ + IPFV+EIVP+VD+ R ++ITPP+GL+E
Sbjct: 175 NQPKTLLIPFVKEIVPVVDLQNRRLEITPPQGLIE 209
>gi|434405319|ref|YP_007148204.1| 16S rRNA processing protein RimM [Cylindrospermum stagnale PCC
7417]
gi|428259574|gb|AFZ25524.1| 16S rRNA processing protein RimM [Cylindrospermum stagnale PCC
7417]
Length = 214
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G + + GL GE+ V P +DFPE RF PGTRWL + G+ + ++L+ GR
Sbjct: 34 DWLAIGKIVAPQGLAGEVRVYPESDFPE-RFEEPGTRWLLRP--GQTQPQPIELLSGRYI 90
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++L G++ QA L G L+ DRPEL + E++ DL+G+ V M+ +GEL
Sbjct: 91 EGKNLYVLQLAGVENCNQAEALRGCKLMVPASDRPELGEDEYHVIDLIGLEVFMQTSGEL 150
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG V ++ +G NDLL V S ASD+ + V IPFV I P+VD+
Sbjct: 151 VGVVADIIPAG-NDLLEVKL------------DPSYASDSKEKTVLIPFVMAIAPVVDLQ 197
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLLE+N
Sbjct: 198 NRRIEITPPPGLLEIN 213
>gi|332711278|ref|ZP_08431210.1| 16S rRNA processing protein RimM [Moorea producens 3L]
gi|332349827|gb|EGJ29435.1| 16S rRNA processing protein RimM [Moorea producens 3L]
Length = 208
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + S HGL+GE+ V PS+DFPE RF PG RWL+ G + V+L+ GR
Sbjct: 5 DWLEIGRIVSPHGLKGELRVYPSSDFPE-RFEEPGQRWLKPP--GDNPPQPVELLWGRFV 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ +G+D +QA L G LL DRPELE+ E++ DL+ + V + TGE
Sbjct: 62 PGKALYVVQLKGVDNRDQAEALRGYQLLVPTSDRPELEEDEYHILDLIDLEVFNQLTGEA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVN-----VIEGSEEASSSASDASGR------LVWIPF 244
VG VV+V +G NDLL V SSV +S A G+ V IPF
Sbjct: 122 VGVVVDVIPAG-NDLLKVKLLSSVQPPPTQPETPPPTRTSKKRQAKGKKEPQPATVLIPF 180
Query: 245 VEEIVPIVDMNGREMQITPPKGLLEL 270
V+ I P+VD+ ++ITPP GLLEL
Sbjct: 181 VKAIAPVVDLENGRIEITPPPGLLEL 206
>gi|282900724|ref|ZP_06308666.1| 16S rRNA processing protein RimM [Cylindrospermopsis raciborskii
CS-505]
gi|281194524|gb|EFA69479.1| 16S rRNA processing protein RimM [Cylindrospermopsis raciborskii
CS-505]
Length = 211
Score = 141 bits (356), Expect = 1e-30, Method: Composition-based stats.
Identities = 81/196 (41%), Positives = 112/196 (57%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL GE+ V P TDFPE RF PGTRWL + G + V+L+ GR
Sbjct: 31 DWIEIGKIVAPQGLTGEMRVYPETDFPE-RFEEPGTRWL--LLPGEPSPEPVQLLHGRYI 87
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ GI A L L GDRPEL GEF+ DL+G+ V M+E+GE
Sbjct: 88 EGKNLYVIKLHGIGDRTAAENLREGRLFVPIGDRPELAPGEFHVIDLIGLPVFMQESGER 147
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ SG +DLL V C S N + G+ V IPFV EIVP+VD+
Sbjct: 148 IGDVTDILPSG-HDLLEVKCDPSWN------------KNLGGKTVLIPFVMEIVPVVDLG 194
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLL +N
Sbjct: 195 NRRIEITPPPGLLSIN 210
>gi|427706049|ref|YP_007048426.1| 16S rRNA processing protein RimM [Nostoc sp. PCC 7107]
gi|427358554|gb|AFY41276.1| 16S rRNA processing protein RimM [Nostoc sp. PCC 7107]
Length = 204
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 118/196 (60%), Gaps = 19/196 (9%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G + + GL GE+ V P TDFPE RF PGTRW+ + G+ ++ ++L+DGR
Sbjct: 28 DWLAIGKIVAPQGLAGELRVYPETDFPE-RFEVPGTRWMLRP--GQTELQTIELLDGRYV 84
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++++ G++T +QA L L E DRPEL + E++ DL+G+ V ++ +GEL
Sbjct: 85 EGKNLYVISIAGVETRDQAEELRDCRLFVPESDRPELGEDEYHVVDLIGLEVYLQASGEL 144
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV+V +G NDLL V + + + + V IPFV+EI P+VD+
Sbjct: 145 LGKVVDVIPAG-NDLLEVELLN---------------HEKANKKVLIPFVKEITPVVDIQ 188
Query: 256 GREMQITPPKGLLELN 271
R ++I PP GLLE+N
Sbjct: 189 ARRVEILPPPGLLEIN 204
>gi|440681092|ref|YP_007155887.1| 16S rRNA processing protein RimM [Anabaena cylindrica PCC 7122]
gi|428678211|gb|AFZ56977.1| 16S rRNA processing protein RimM [Anabaena cylindrica PCC 7122]
Length = 243
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 120/196 (61%), Gaps = 9/196 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + S GL GE+ V P+TDFPE RF PGTRWL + G + V+L+DGR
Sbjct: 56 DWLEIGKIVSPQGLAGELRVYPNTDFPE-RFEEPGTRWLLRP--GDMEPQPVELLDGRYV 112
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ EG+ A + L DRPEL++GE++ DL+G++V M+E+G+
Sbjct: 113 DGKNLYVIKLEGVSDRTGAENMRDCRLFVPISDRPELDEGEYHVLDLIGLQVFMQESGQF 172
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV++ SG +DLL V + +EE ++ + V IPFV EIVP+VD+
Sbjct: 173 VGTVVDLLPSG-HDLLEVKLDPAFTT--NNEEPTTEKEQKT---VLIPFVMEIVPVVDLE 226
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLL +N
Sbjct: 227 TRRVEITPPPGLLSIN 242
>gi|354567935|ref|ZP_08987102.1| Ribosome maturation factor rimM [Fischerella sp. JSC-11]
gi|353541609|gb|EHC11076.1| Ribosome maturation factor rimM [Fischerella sp. JSC-11]
Length = 185
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 114/196 (58%), Gaps = 22/196 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V P +DFPE RF PG RWL + G +EV+L+ GR
Sbjct: 11 NWIEIGTIVAPQGLRGEMRVYPDSDFPE-RFEVPGKRWLLRA--GETEPQEVELLTGRII 67
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ G+D QA L GS LL DRP+L + E++ DL+G+ V M+E+GEL
Sbjct: 68 EGKNLYVVKLAGVDDRNQAEELRGSKLLVCASDRPQLGEDEYHVLDLIGLSVFMQESGEL 127
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV+V +G NDLL V + V IPFV+ I P VD+
Sbjct: 128 VGTVVDVIAAG-NDLLEVKLHQQQTA------------------VLIPFVKAITPTVDLE 168
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLLE+N
Sbjct: 169 ARRIEITPPPGLLEIN 184
>gi|298489745|ref|YP_003719922.1| 16S rRNA processing protein RimM ['Nostoc azollae' 0708]
gi|298231663|gb|ADI62799.1| 16S rRNA processing protein RimM ['Nostoc azollae' 0708]
Length = 217
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL GE+ V P+TDFPE RF GTRWL + G + ++L+DGR
Sbjct: 37 DWLEIGKIVAPQGLAGELRVYPNTDFPE-RFEESGTRWLLRP--GEMEPQPIELLDGRYV 93
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ EG+ A + L DRPE+E+GEF+ DL+ ++V M+ETG+
Sbjct: 94 EGKNLYVIKLEGVSDRTAAENIRDCRLFVPISDRPEVEEGEFHVIDLLALQVFMQETGQF 153
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV++ SG +DLL V + A D +G+ V IPFV EIVPIVD+
Sbjct: 154 VGTVVDILPSG-HDLLEVKF------------DPAFAEDKAGKTVLIPFVIEIVPIVDLE 200
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLL +N
Sbjct: 201 TRRVEITPPPGLLSIN 216
>gi|218248799|ref|YP_002374170.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8801]
gi|226694911|sp|B7K5W1.1|RIMM_CYAP8 RecName: Full=Ribosome maturation factor RimM
gi|218169277|gb|ACK68014.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8801]
Length = 186
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 15/195 (7%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + GL+GE+ V S+DFPE RF PGTRWL Q R +I+EV+L+ GR P
Sbjct: 7 WLEIGRIVAAQGLKGELKVMSSSDFPE-RFEKPGTRWL--QSPDRLSIQEVELVRGRYVP 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ I QA L TLL DRP+L +GE++ DL+ + V ++TGE +
Sbjct: 64 GKNLYVIKLAEIADRTQAETLRDYTLLVPSSDRPQLNEGEYHVSDLINLTVYHQQTGEEI 123
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ ++G NDLL V +N + SE SS + V IPFV EIVP+VD+
Sbjct: 124 GVVTDMLSAG-NDLLEV----QLNTLNSSENTSS-------KKVLIPFVYEIVPVVDLVN 171
Query: 257 REMQITPPKGLLELN 271
+ ++I PP GLLEL+
Sbjct: 172 KRIEINPPVGLLELS 186
>gi|186682347|ref|YP_001865543.1| 16S rRNA-processing protein RimM [Nostoc punctiforme PCC 73102]
gi|209573584|sp|B2J3X9.1|RIMM_NOSP7 RecName: Full=Ribosome maturation factor RimM
gi|186464799|gb|ACC80600.1| 16S rRNA processing protein RimM [Nostoc punctiforme PCC 73102]
Length = 235
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 20/211 (9%)
Query: 65 QEIVETSASGL----DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG 120
Q IV + S + +++++G + S GL GE+ V P +DFPE RF PG RWL L
Sbjct: 40 QPIVPNTQSPVPNLDNWLEIGKIVSPQGLSGELKVYPVSDFPE-RFEVPGKRWLLH--LD 96
Query: 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTR 180
+ ++L+ GR + +++ G++ +QA L G L+ DRP+L + E++
Sbjct: 97 GTEPQPIQLLTGRYISNKNLYVIKLAGVENCDQAEALRGCKLMVPASDRPQLAEDEYHVL 156
Query: 181 DLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
DL+G+ V M+ +GELVGTVV++ +G NDLL V + S +D + V
Sbjct: 157 DLIGLEVFMQASGELVGTVVDIIPAG-NDLLEVKLHPSF------------TTDKKQKTV 203
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLELN 271
IPFVE I P+VD+ ++ITPP GLLE+N
Sbjct: 204 LIPFVEAIAPVVDLKSNRIEITPPPGLLEIN 234
>gi|443328036|ref|ZP_21056640.1| 16S rRNA processing protein RimM [Xenococcus sp. PCC 7305]
gi|442792345|gb|ELS01828.1| 16S rRNA processing protein RimM [Xenococcus sp. PCC 7305]
Length = 219
Score = 138 bits (348), Expect = 9e-30, Method: Composition-based stats.
Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 18/206 (8%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + GL+GE+ V PS+DFPE RF GTRWL+ G I+E++L+ GR P
Sbjct: 14 WLEIGTIVAAQGLRGEVRVYPSSDFPE-RFLEAGTRWLQHPETG--NIQEIELLGGRYLP 70
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ EGI+ +QA L G TLL + DR +L + E++ DL+ + V ++TGE +
Sbjct: 71 GKNLYVVMLEGIEFRDQAEALKGHTLLVSDQDRLDLSEDEYHVADLMNLEVFNQKTGENI 130
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSAS--------------DASGRLVWI 242
G VV++F +G NDLL V Y V+ + E+ S + I
Sbjct: 131 GIVVDIFYAG-NDLLKVQLYKQVDDQKNIEQQDKDLSAISRKSKRKKFKKKKTQAPTILI 189
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLL 268
PFV+EIVPIVD+ ++I PP+GLL
Sbjct: 190 PFVKEIVPIVDLEHNRLEIMPPEGLL 215
>gi|427735560|ref|YP_007055104.1| 16S rRNA processing protein RimM [Rivularia sp. PCC 7116]
gi|427370601|gb|AFY54557.1| 16S rRNA processing protein RimM [Rivularia sp. PCC 7116]
Length = 191
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 122/197 (61%), Gaps = 11/197 (5%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + G++GE+ V TDFPE RF PG RWL ++ ++EV+L+ GR
Sbjct: 4 WLEIGKIVAPQGMKGELRVYSDTDFPE-RFEKPGKRWLLRE--NATELQEVELVKGRFLE 60
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ G++ ++A L G L+ E DRPEL + E++ DL+G+ V M++ GEL+
Sbjct: 61 GKNLYVIQLAGVNYRDEAEDLRGCKLVVPESDRPELGEDEYHLMDLLGVSVFMQDDGELI 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL--VWIPFVEEIVPIVDM 254
GTVV++ N+G NDLL V EG EE + + + V IPFV+EIVP+VD+
Sbjct: 121 GTVVDLINAG-NDLLEVRLKR-----EGLEERQEGKNSKTQKHKNVLIPFVKEIVPVVDL 174
Query: 255 NGREMQITPPKGLLELN 271
++ITPP GLLE+N
Sbjct: 175 ESGRIEITPPIGLLEIN 191
>gi|209526252|ref|ZP_03274782.1| 16S rRNA processing protein RimM [Arthrospira maxima CS-328]
gi|376007919|ref|ZP_09785101.1| 16S rRNA processing protein RimM [Arthrospira sp. PCC 8005]
gi|423062817|ref|ZP_17051607.1| 16S rRNA processing protein RimM [Arthrospira platensis C1]
gi|209493349|gb|EDZ93674.1| 16S rRNA processing protein RimM [Arthrospira maxima CS-328]
gi|375323712|emb|CCE20854.1| 16S rRNA processing protein RimM [Arthrospira sp. PCC 8005]
gi|406715773|gb|EKD10926.1| 16S rRNA processing protein RimM [Arthrospira platensis C1]
Length = 212
Score = 138 bits (347), Expect = 1e-29, Method: Composition-based stats.
Identities = 78/215 (36%), Positives = 123/215 (57%), Gaps = 29/215 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL GE+ V P++DFPE RF PGTRWL++ G+ V+L+ GR
Sbjct: 3 DWIEIGKIVAAQGLDGEMRVYPNSDFPE-RFIEPGTRWLQKP--GQNEPSPVELLGGRFI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ + + G++T EQA L S L + G RP L+D EFY DL+G+ V ++T ++
Sbjct: 60 PGKGLYAIEMVGVETREQAEALRDSRLFIQYGARPHLDDNEFYVLDLIGLEVFNQDTQDM 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASG------------------ 237
+GTV++V +G NDLL V +N E+ ++ +
Sbjct: 120 IGTVIDVIPAG-NDLLEV----QLNFTPTEEDLATDTERQAKLEKIPQNKRRKRHFQTKA 174
Query: 238 ---RLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
+ V IPFV++IVP+VD+ R ++ITPP+GL+E
Sbjct: 175 KQPKTVLIPFVKDIVPVVDLENRRLEITPPQGLIE 209
>gi|17230304|ref|NP_486852.1| 16S rRNA-processing protein RimM [Nostoc sp. PCC 7120]
gi|21362862|sp|Q8YTB1.1|RIMM_NOSS1 RecName: Full=Probable 16S rRNA-processing protein RimM
gi|17131905|dbj|BAB74511.1| alr2812 [Nostoc sp. PCC 7120]
Length = 246
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 16/202 (7%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T+ + +++ +G + S GL GE+ V P +DFPE RF PGTRWL + G+ + ++L
Sbjct: 58 TTPNPDEWLQIGKIVSAQGLSGEVRVYPDSDFPE-RFEVPGTRWLLRP--GQTEPQPIEL 114
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR + ++L G++ Q+ L G L DRPEL + E++ DL+GM V +
Sbjct: 115 LHGRYLENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFL 174
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ +G+LVG VV+V +G NDLL V + V SD + V IPFV+ I
Sbjct: 175 QASGDLVGAVVDVIPAG-NDLLEVSLHEPVT------------SDKKPKTVLIPFVKAIA 221
Query: 250 PIVDMNGREMQITPPKGLLELN 271
P+VD+ R ++ITPP GLLEL
Sbjct: 222 PVVDLQTRRIEITPPPGLLELG 243
>gi|218438369|ref|YP_002376698.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 7424]
gi|218171097|gb|ACK69830.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7424]
Length = 207
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 15/207 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+GE+ V +DFPE RF PG RWL ++EV+L++GR
Sbjct: 3 DWLEIGTIVAPQGLKGEVRVASESDFPE-RFEQPGKRWLLPP--NSVQVQEVELLNGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+K +++ GID +++A L G +L ++ DRP+LE+ E++ DLV + V + TGE
Sbjct: 60 PGKKIYVVQLAGIDHIDRAEELRGYKILVKKSDRPQLEEDEYHVADLVNLEVYHQLTGEN 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASG-----------RLVWIPF 244
+G V ++ ++G NDLL V + E E S S S + IPF
Sbjct: 120 LGIVTDILSAG-NDLLEVTLHQQPEREEKPEPDLSKVSRKSKLRKLKPKQRKPATLLIPF 178
Query: 245 VEEIVPIVDMNGREMQITPPKGLLELN 271
V+EIVPIVD+ ++I PP GLLE+N
Sbjct: 179 VKEIVPIVDLKTGRIEIKPPPGLLEMN 205
>gi|257061858|ref|YP_003139746.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 8802]
gi|256592024|gb|ACV02911.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 8802]
Length = 186
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 118/195 (60%), Gaps = 15/195 (7%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + GL+GE+ V S+DFPE RF PGTRWL Q R +I+EV+L+ GR P
Sbjct: 7 WLEIGRIVAAQGLKGELKVMSSSDFPE-RFEKPGTRWL--QSPDRLSIQEVELVRGRYVP 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ I QA L TLL DRP+L + E++ DL+ + V ++TGE +
Sbjct: 64 GKNLYVIKLAEIADRTQAETLRDYTLLVPSSDRPQLNEDEYHVSDLINLTVYHQQTGEEI 123
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ ++G NDLL V +N + SE SS + V IPFV EIVP+VD+
Sbjct: 124 GVVTDMLSAG-NDLLEV----QLNTLNSSENTSS-------KKVLIPFVYEIVPVVDLVN 171
Query: 257 REMQITPPKGLLELN 271
+ ++I PP GLLEL+
Sbjct: 172 KRIEINPPVGLLELS 186
>gi|254430524|ref|ZP_05044227.1| 16S rRNA processing protein RimM [Cyanobium sp. PCC 7001]
gi|197624977|gb|EDY37536.1| 16S rRNA processing protein RimM [Cyanobium sp. PCC 7001]
Length = 172
Score = 137 bits (345), Expect = 2e-29, Method: Composition-based stats.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 25/191 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V + GL+GE+ V P +DFPE RFT PG RWL+++ G E REV+L+ GR+ PG++
Sbjct: 7 VGKVVAAQGLRGEVRVLPMSDFPE-RFTRPGRRWLQRR--GAEP-REVELLTGRQLPGKE 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++L G+++ + A LVG LL R DRP L GEF+ DLVG+ V + +GE+VGTV
Sbjct: 63 LFVLRLAGVESRDAAEALVGEELLVRSDDRPRLAKGEFHLLDLVGLEVRLLASGEVVGTV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ ++G NDLL V A R + IPFV IVP V + +
Sbjct: 123 TDLIHAG-NDLLAVA--------------------AGDRQLLIPFVAAIVPEVKLAEGWI 161
Query: 260 QITPPKGLLEL 270
ITPP GLLEL
Sbjct: 162 GITPPPGLLEL 172
>gi|414077909|ref|YP_006997227.1| 16S rRNA processing protein RimM [Anabaena sp. 90]
gi|413971325|gb|AFW95414.1| 16S rRNA processing protein RimM [Anabaena sp. 90]
Length = 236
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 118/196 (60%), Gaps = 9/196 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + S GL GE+ V P+TDFPE RF PG RWL + G + V+L++GR
Sbjct: 49 DWLEIGKIVSPQGLTGELRVYPNTDFPE-RFEEPGKRWLLRP--GEMELETVELLNGRYI 105
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +++ +G+ QA + DRPEL++GEF+ DL+G++V M+ +GE
Sbjct: 106 ENKNLYVIKLKGVSDRHQAENMRDCRFFVPVSDRPELDEGEFHVLDLLGLQVFMQSSGEF 165
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV++ SG +DLL V + I +EE + +D + V IPFV EIVP+VD+
Sbjct: 166 VGTVVDILPSG-HDLLEVKFDPA--FITNNEELT---TDKVQKTVLIPFVMEIVPVVDLE 219
Query: 256 GREMQITPPKGLLELN 271
R ++I PP GLL +N
Sbjct: 220 NRRVEIIPPPGLLSIN 235
>gi|428216864|ref|YP_007101329.1| 16S rRNA processing protein RimM [Pseudanabaena sp. PCC 7367]
gi|427988646|gb|AFY68901.1| 16S rRNA processing protein RimM [Pseudanabaena sp. PCC 7367]
Length = 202
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 116/195 (59%), Gaps = 23/195 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + G++G++ V +DFPE RFT PG RWLR+ + T ++L +GR
Sbjct: 23 EWLEIGKIVAAQGIKGQLRVLSDSDFPE-RFTKPGQRWLRRS--PQSTPEPIELKNGRAI 79
Query: 136 PGQKS-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ + +I+T G++ +QA L GS LL GDRP+L +GEF+ DL+G V ++ TG
Sbjct: 80 PGKTNMYIITLVGVENRDQAEALRGSLLLVAAGDRPKLAEGEFHIDDLIGCEVFLQATGA 139
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V ++F +G NDLL V AS + V +P VE IVP+VD
Sbjct: 140 LIGKVQSLFVAG-NDLLEVKAI------------------ASSKTVLVPLVEAIVPVVDT 180
Query: 255 NGREMQITPPKGLLE 269
+ ++ITPP GL++
Sbjct: 181 KAKRIEITPPDGLID 195
>gi|384248114|gb|EIE21599.1| 16S rRNA processing protein RimM [Coccomyxa subellipsoidea C-169]
Length = 305
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 18/222 (8%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ---VLGRET-IRE 126
++SGL +++G S HG++G+I TD P R TPG+++++ Q VL R + R
Sbjct: 80 TSSGL--LELGTFGSPHGVKGDIKFYALTDSPLERLNTPGSKFVQPQRASVLQRNSQARP 137
Query: 127 VKLIDGRE--HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLV 183
V++ R + G++ W++ +GIDT E A LL DRP LED EFY ++LV
Sbjct: 138 VEVERCRPILNKGKEVWLVKLKGIDTPEAAEAFKAQCLLMPAQDRPALEDEEEFYVQELV 197
Query: 184 GMRVVMKETGELVGTVVNVFN-SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWI 242
GM+V+M+ETG+ VGTVV++++ +G D L V + GS E +S++S R V +
Sbjct: 198 GMQVIMQETGQAVGTVVDLYDGTGTYDTLRVQLTTD----SGSGEGASTSS----RTVLL 249
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQ 284
PFV E+VPIVD R M+I PP GLL++ + + K RR+
Sbjct: 250 PFVAEMVPIVDRQARRMEIAPPAGLLDIVTTQETKKKNVRRR 291
>gi|75907314|ref|YP_321610.1| 16S rRNA-processing protein RimM [Anabaena variabilis ATCC 29413]
gi|109892999|sp|Q3ME71.1|RIMM_ANAVT RecName: Full=Probable 16S rRNA-processing protein RimM
gi|75701039|gb|ABA20715.1| 16S rRNA processing protein RimM [Anabaena variabilis ATCC 29413]
Length = 233
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ +G + S GL GE+ V P +DFPE RF PGTRWL + G+ + ++L+ GR
Sbjct: 51 EWLQIGKIVSAQGLSGEVRVYPDSDFPE-RFEVPGTRWLLRP--GQTEPQPIELLHGRYL 107
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ ++L G++ Q+ L G L DRPEL + E++ DL+GM V ++ +G+L
Sbjct: 108 ENKNLYVLQLAGVENRTQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFLQTSGDL 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV+V +G NDLL V + V SD + V IPFV+ I P+VD+
Sbjct: 168 VGTVVDVIPAG-NDLLEVSLHEPV------------PSDKKPKTVLIPFVKAIAPVVDLE 214
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLLEL
Sbjct: 215 TRRIEITPPPGLLELG 230
>gi|33864216|ref|NP_895776.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9313]
gi|33635800|emb|CAE22125.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9313]
Length = 181
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 11 DWLTVGKVVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 66
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 67 PGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 126
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 127 IGHVIDLTTAG-NDLLEIELL-------------------TGRRVLVPFVEAIVPEVQLN 166
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 167 QGWLRLTPPPGLLEL 181
>gi|428206547|ref|YP_007090900.1| 16S rRNA processing protein RimM [Chroococcidiopsis thermalis PCC
7203]
gi|428008468|gb|AFY87031.1| 16S rRNA processing protein RimM [Chroococcidiopsis thermalis PCC
7203]
Length = 233
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 116/215 (53%), Gaps = 25/215 (11%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL GE+ V P +DFPE RF PG RWL + G+ ++LI+GR+ P
Sbjct: 23 WLAIGTIVAPQGLDGEVRVYPDSDFPE-RFIEPGQRWLLRP--GKTEPEPIELIEGRDIP 79
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ EGI+ QA L LL E DRPEL + E++ DL+G+ V ++ETGE +
Sbjct: 80 GKGLYVVALEGIEDRSQAEALRDCVLLVPESDRPELGEDEYHVVDLIGLEVFLQETGESI 139
Query: 197 GTVVNVFNSGANDLLHVMCYS---------------------SVNVIEGSEEASSSASDA 235
GTV +V +G NDLL V + +V + +S
Sbjct: 140 GTVTDVIPAG-NDLLEVQLHQEAKSQKSEVKISDPPLPTPDYAVPMRRTPPPPPASQLPT 198
Query: 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
R V IPFV+ I P+VD+ R ++I PP GLLEL
Sbjct: 199 HPRKVLIPFVKAIAPVVDLEMRRIEIAPPPGLLEL 233
>gi|48474357|sp|Q7V4K0.2|RIMM_PROMM RecName: Full=Ribosome maturation factor RimM
Length = 176
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 6 DWLTVGKVVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 62 PGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 122 IGHVIDLTTAG-NDLLEIELL-------------------TGRRVLVPFVEAIVPEVQLN 161
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 162 QGWLRLTPPPGLLEL 176
>gi|124024290|ref|YP_001018597.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9303]
gi|123964576|gb|ABM79332.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9303]
Length = 181
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 11 DWLTVGKLVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 66
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 67 PGRSLYVVKFAGVNNRNAAEALVGQNLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 126
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 127 IGHVIDLTTAG-NDLLEIELL-------------------AGRRVLVPFVEAIVPEVQLN 166
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 167 QGWLRLTPPPGLLEL 181
>gi|171769889|sp|A2CCX2.2|RIMM_PROM3 RecName: Full=Ribosome maturation factor RimM
Length = 176
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 6 DWLTVGKLVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 62 PGRSLYVVKFAGVNNRNAAEALVGQNLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 122 IGHVIDLTTAG-NDLLEIELL-------------------AGRRVLVPFVEAIVPEVQLN 161
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 162 QGWLRLTPPPGLLEL 176
>gi|427732388|ref|YP_007078625.1| 16S rRNA processing protein RimM [Nostoc sp. PCC 7524]
gi|427368307|gb|AFY51028.1| 16S rRNA processing protein RimM [Nostoc sp. PCC 7524]
Length = 222
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 16/195 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL GE+ V P+TDFPE RF PG RWL G+ + ++L+ GR
Sbjct: 40 DWIEIGKIVAPQGLSGELRVYPNTDFPE-RFEEPGQRWLLYP--GKTEPQPIELLTGRYI 96
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++T G+D QA L L DRP+L + E++ DL+G+ V ++ +GEL
Sbjct: 97 EGKNLYVITLAGVDNRNQAEELRDCRLFVPVSDRPQLGEDEYHVIDLIGLEVFLQTSGEL 156
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV+V +G +DLL V AS + V IPFV+EIVP+VD+
Sbjct: 157 VGTVVDVMAAG-HDLLEVKL------------PELPASKQKQKTVLIPFVKEIVPVVDLP 203
Query: 256 GREMQITPPKGLLEL 270
++I PP GLLEL
Sbjct: 204 AHRIEINPPAGLLEL 218
>gi|113478011|ref|YP_724072.1| 16S rRNA-processing protein RimM [Trichodesmium erythraeum IMS101]
gi|123351730|sp|Q10VX5.1|RIMM_TRIEI RecName: Full=Ribosome maturation factor RimM
gi|110169059|gb|ABG53599.1| 16S rRNA processing protein RimM [Trichodesmium erythraeum IMS101]
Length = 208
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 19/210 (9%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+G++ V PS+DFPE RFT PG RWL G+ ++L+ GR
Sbjct: 3 EWIEIGKIVAPQGLKGDLRVYPSSDFPE-RFTEPGKRWLLSP--GQVEPISIELLSGRYV 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ GI + +QA L S LL +GDRP+LE EFY DL+G+ V+ + G+
Sbjct: 60 PGKGLYVIELAGIKSRQQAEALRNSQLLIEKGDRPQLEADEFYVPDLIGLTVINQLNGKT 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSS-----VNVIEGSEEASSSAS----------DASGRLV 240
+G V+N+ +G NDLL V S+ V+E + + S S + +
Sbjct: 120 IGKVINIIFAG-NDLLEVEKISTDTPVISEVVENNLPSKSKRSRDTKNQKKNQSPPSKKI 178
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
IPFV+EIVPIV+ ++ITPP GL++L
Sbjct: 179 LIPFVKEIVPIVNFEQSIIEITPPDGLIDL 208
>gi|148241234|ref|YP_001226391.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
gi|209573626|sp|A5GQ79.1|RIMM_SYNR3 RecName: Full=Ribosome maturation factor RimM
gi|147849544|emb|CAK27038.1| RimM protein, required for 16S rRNA processing [Synechococcus sp.
RCC307]
Length = 175
Score = 133 bits (335), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 23/194 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F+ VG V + GL+GE+ + P++DFP+ RFT PG+RWLR++ + +V+L+ GR+
Sbjct: 4 EFLVVGQVVAAQGLKGEVRILPASDFPQ-RFTEPGSRWLRRRGHNEQ---QVQLLSGRQL 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++ +++ FEGI+ A LV L D PELEDGEF+ RDL G+ V + +
Sbjct: 60 PGKELFVVRFEGINDRTAAESLVHQEFLVAADDIPELEDGEFHVRDLQGLSVRLDTESDP 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ + G NDLL + A GR +PFV+ IVP V++
Sbjct: 120 IGVVVDL-HHGGNDLLEIEL------------------KADGRRCLVPFVDAIVPQVELE 160
Query: 256 GREMQITPPKGLLE 269
+ ITPPKGLL+
Sbjct: 161 EGWLLITPPKGLLD 174
>gi|428204652|ref|YP_007083241.1| 16S rRNA processing protein RimM [Pleurocapsa sp. PCC 7327]
gi|427982084|gb|AFY79684.1| 16S rRNA processing protein RimM [Pleurocapsa sp. PCC 7327]
Length = 207
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 15/207 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+GE+ V P++DFPE RF PG RWL Q + + EV+L+ GR
Sbjct: 3 DWLEIGTIVTPQGLKGELRVTPNSDFPE-RFEEPGRRWL--QAPSGDRVTEVELLGGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ G++ A L G LL R DRP+L + E++ DL+ + V + TGE
Sbjct: 60 PGKNLYVIQLAGVEDRNSAEELRGYKLLVRSCDRPQLAEDEYHVLDLIDLEVYNQLTGEK 119
Query: 196 VGTVVNVFNSGANDLLHV-MCYSSVN-VIEGSEEASSSASDASGRL---------VWIPF 244
+G V N+F +G NDLL V + SVN IE + E + S ++ V IPF
Sbjct: 120 LGVVSNIFWAG-NDLLEVKLERQSVNEKIEETSELEPTESKKKHKIKHKKPRSLTVLIPF 178
Query: 245 VEEIVPIVDMNGREMQITPPKGLLELN 271
V+EIVP+VD+ ++I PP GLLE+N
Sbjct: 179 VKEIVPVVDLEKGRIEIAPPAGLLEIN 205
>gi|428772086|ref|YP_007163874.1| 16S rRNA processing protein RimM [Cyanobacterium stanieri PCC 7202]
gi|428686365|gb|AFZ46225.1| 16S rRNA processing protein RimM [Cyanobacterium stanieri PCC 7202]
Length = 206
Score = 132 bits (331), Expect = 7e-28, Method: Composition-based stats.
Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 15/205 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +++G + GL+GE+ V +TDFPE RF PG RWL + + + V+L+ GR+
Sbjct: 5 DLIEIGTIVGASGLKGELRVNITTDFPE-RFENPGQRWL--TINNNSSPQIVELLRGRKV 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ E ++ QA L G+TL + DRP LE+GE++ DL+GM V ++ GE
Sbjct: 62 PGKNIYVVKLENVNDRTQAENLKGATLWVDKSDRPYLEEGEYHVADLIGMEVYNQQNGEN 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSV-----------NVIEGSEEASSSASDASGRLVWIPF 244
+G VV+VF S A+++L V + N+ S V IPF
Sbjct: 122 IGVVVDVF-SAAHEILEVKLHKQPLVETKPPVNLENISRISRRKKVKPKKTKAITVLIPF 180
Query: 245 VEEIVPIVDMNGREMQITPPKGLLE 269
V EIVPIVD++ ++++I PP GLL+
Sbjct: 181 VAEIVPIVDIDNQKIEINPPTGLLD 205
>gi|119511287|ref|ZP_01630402.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
gi|119464078|gb|EAW45000.1| 16S rRNA-processing protein [Nodularia spumigena CCY9414]
Length = 223
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 114/197 (57%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL GE+ V P +DFPE RF PGTRWL G + V+L+ GR
Sbjct: 35 EWLEIGKIVAPQGLSGELRVYPESDFPE-RFEVPGTRWLWHP--GDREPQPVELLSGRYV 91
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ I++ G+ A L L+ DRP+L + E++ DL+GM V M+E+GEL
Sbjct: 92 EGKNLCIISLAGVRNRNDAEALRDYKLMVPASDRPQLGEDEYHVTDLIGMLVFMQESGEL 151
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG VV+V +G N LL V + + +E S + S + + IPFV+ I P+VD+
Sbjct: 152 VGEVVDVIPAG-NFLLEVKLHQQIPDVE-----SETLQPQSPKKLLIPFVKAIAPVVDLP 205
Query: 256 GREMQITPPKGLLELNL 272
R ++ITPP GLLEL +
Sbjct: 206 SRRIEITPPPGLLELAI 222
>gi|434398357|ref|YP_007132361.1| Ribosome maturation factor rimM [Stanieria cyanosphaera PCC 7437]
gi|428269454|gb|AFZ35395.1| Ribosome maturation factor rimM [Stanieria cyanosphaera PCC 7437]
Length = 211
Score = 131 bits (329), Expect = 1e-27, Method: Composition-based stats.
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 15/206 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+GE+ V PS+DFPE RF PG RWL+ E I E+ L+ GR
Sbjct: 9 DWLEIGTIVAPQGLKGELRVYPSSDFPE-RFLEPGIRWLQDP--KTEEIEEIDLLHGRYL 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +I+T +G++ E A L G +L +GD PEL + E++ +L+G+ V +ETGE
Sbjct: 66 AGKNLYIITIDGVEDRETAESLKGYKILVEQGDLPELAEDEYHVSELIGLEVYHQETGEK 125
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR-----------LVWIPF 244
+G V ++F +G NDLL V E S S + R + IPF
Sbjct: 126 IGVVTDLFTAG-NDLLEVRLEQQPIQTEKPIRDLSEISRRTKRKQFRPKPVKPVTILIPF 184
Query: 245 VEEIVPIVDMNGREMQITPPKGLLEL 270
V+EIV IVD+ +++ PP GLLE+
Sbjct: 185 VKEIVTIVDLEKGRLELNPPAGLLEI 210
>gi|254417637|ref|ZP_05031371.1| 16S rRNA processing protein RimM [Coleofasciculus chthonoplastes
PCC 7420]
gi|196175555|gb|EDX70585.1| 16S rRNA processing protein RimM [Coleofasciculus chthonoplastes
PCC 7420]
Length = 203
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+GE+ V P++DFPE RF G RWL+Q V + + V+L+ GR
Sbjct: 5 DWLEIGRIVAPQGLKGELRVYPNSDFPE-RFEKSGQRWLKQSVDSQP--QPVELLGGRYV 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ G++ EQA L +TLL E DRPEL + E++ D++ + V + TGE
Sbjct: 62 PGKGIYVVKLAGVENREQAEALRDATLLVPESDRPELGENEYHVLDVLDLEVFNQLTGEA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR----------LVWIPFV 245
VG VVNV +G N LL V + EA + R V IPFV
Sbjct: 122 VGIVVNVIPAG-NMLLEVKLHHQPEPTPAKPEAPLPNRISKQRKARKKPSKPVTVLIPFV 180
Query: 246 EEIVPIVDMNGREMQITPPKGLL 268
+EIVP+VD+ ++ITPP+GLL
Sbjct: 181 DEIVPVVDLENGRIEITPPQGLL 203
>gi|318042836|ref|ZP_07974792.1| 16S rRNA-processing protein RimM [Synechococcus sp. CB0101]
Length = 205
Score = 131 bits (329), Expect = 2e-27, Method: Composition-based stats.
Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 32/210 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE---VKLIDGREHP 136
VG V + GL+GE+ V P +DFPE RFT PG RWLR R E V+L+ GR+ P
Sbjct: 10 VGRVVAAQGLRGELRVNPLSDFPE-RFTRPGRRWLRPAQGRRGEAAEATAVELLSGRQLP 68
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV--------- 187
G++ +++ EG++ A LVG LL DRP+L GEF+ DLVG+ V
Sbjct: 69 GKELFVIRLEGVNDRSSAEALVGQELLVPAADRPKLARGEFHLLDLVGLEVRLLEGSDVE 128
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
M +TG +GTV ++ ++G NDLL V S G +WIPFV+
Sbjct: 129 TMAQTGRCIGTVKDLIHAG-NDLLEVELTS------------------GGAPLWIPFVKA 169
Query: 248 IVPIVDMNGREMQITPPKGLLELNLRTDER 277
IVP V + + ITPP GLLEL +D++
Sbjct: 170 IVPEVQLEAGWIGITPPPGLLELGQVSDDQ 199
>gi|166364114|ref|YP_001656387.1| 16S rRNA-processing protein RimM [Microcystis aeruginosa NIES-843]
gi|425463362|ref|ZP_18842701.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9809]
gi|209573583|sp|B0JU07.1|RIMM_MICAN RecName: Full=Ribosome maturation factor RimM
gi|166086487|dbj|BAG01195.1| 16S rRNA processing protein RimM homolog [Microcystis aeruginosa
NIES-843]
gi|389833790|emb|CCI21408.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9809]
Length = 192
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 121/197 (61%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGMRGIQGPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++F +G ND+L V +++ S + S +SD+ R + +PFV+EIVP+VD+
Sbjct: 121 IGVVVDIFWAG-NDILAVQLEANL----ASVKKKSPSSDSEARAL-VPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I PP GLLE+NL
Sbjct: 175 AARIEIAPPPGLLEINL 191
>gi|307151402|ref|YP_003886786.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7822]
gi|306981630|gb|ADN13511.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7822]
Length = 210
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 14/206 (6%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+GE+ V +DFPE RF PG RWL ++EV+L+ GR
Sbjct: 3 DWLEIGTIVAPQGLKGEVRVSSESDFPE-RFEEPGKRWLVPP--NSVQVQEVELLSGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ GI+ E+A L G LL DRP L + E++ DL+ + V ++TGE
Sbjct: 60 PGKNIYVVQLAGIEDREEAEALRGYKLLVPLSDRPSLSEDEYHVADLINLEVYNQQTGEN 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL----------VWIPFV 245
VG V + +G NDLL V + + E S + R V IPFV
Sbjct: 120 VGIVTELLWAG-NDLLEVTLHQQPEIKPTPELDLSKVRKSKHRKLKPKVKKPLTVLIPFV 178
Query: 246 EEIVPIVDMNGREMQITPPKGLLELN 271
+EIVP+VD+ R ++I PP GLLE+N
Sbjct: 179 KEIVPVVDLQSRRIEINPPAGLLEVN 204
>gi|359460294|ref|ZP_09248857.1| 16S rRNA processing protein RimM [Acaryochloris sp. CCMEE 5410]
Length = 192
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + HGL GE+ V P +DFPE RFT PG RWL + G T E++LI GR
Sbjct: 19 EWLEVGTIVGAHGLNGEVKVYPDSDFPE-RFTQPGPRWLVPPI-GASTPEEIQLIRGRFV 76
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +++ ++ +Q+ L G+ LL R DRP L +GE+Y DL+G+ VV +T +
Sbjct: 77 ERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGITVVDHQTQAV 136
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG+VV++ ++G NDLL + + I +PFV +VPIVD+
Sbjct: 137 VGSVVSLASAG-NDLLEIQLADTTKTI------------------LLPFVSALVPIVDIE 177
Query: 256 GREMQITPPKGLL 268
+ ++ITPPKGL+
Sbjct: 178 RKRIEITPPKGLI 190
>gi|428304495|ref|YP_007141320.1| 16S rRNA processing protein RimM [Crinalium epipsammum PCC 9333]
gi|428246030|gb|AFZ11810.1| 16S rRNA processing protein RimM [Crinalium epipsammum PCC 9333]
Length = 192
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 15/198 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL GE+ V P++DFPE RF PGTRWL + G + ++L+ G
Sbjct: 6 EWLEIGTIVAPQGLNGEMRVYPTSDFPE-RFEEPGTRWLLKP--GETEPQPIELLGGYYL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ GI+ Q L G L+ E DRP L + E++ DLVG V + TGE
Sbjct: 63 AGKNLYVVELAGIEDRSQVEELRGYQLMVPESDRPTLAEDEYHIIDLVGAEVFNQLTGEN 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA---SGRLVWIPFVEEIVPIV 252
+G VV+V ++G NDLL V + + AS+S SD+ S + V IPFV+EIVP+V
Sbjct: 123 LGVVVSVISAG-NDLLEVKRHQT--------SASTSQSDSKQKSAKTVLIPFVKEIVPVV 173
Query: 253 DMNGREMQITPPKGLLEL 270
D+ + ++I PP GLL+L
Sbjct: 174 DIIQKRIEINPPPGLLDL 191
>gi|260435475|ref|ZP_05789445.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
gi|260413349|gb|EEX06645.1| 16S rRNA processing protein RimM [Synechococcus sp. WH 8109]
Length = 177
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 102/179 (56%), Gaps = 23/179 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + V GLQGE+ V P++DFPE RFT PG RWLR + G T E++L GR+
Sbjct: 6 EWLSVGKIVGVQGLQGELRVNPASDFPE-RFTAPGPRWLRSRKGGEPT--EIQLKKGRQL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EGID+ A LVG LL DRPELE+GEF+ DL+G+ + G
Sbjct: 63 PGKSLFVVRLEGIDSRSAAETLVGHELLVSADDRPELEEGEFHLLDLLGLEARLTADGPA 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV ++ SG NDLL + + GR + IPFVE IVP V +
Sbjct: 123 VGTVSDLI-SGGNDLLEITT-------------------SEGRKLLIPFVEAIVPKVQL 161
>gi|56751848|ref|YP_172549.1| 16S rRNA-processing protein RimM [Synechococcus elongatus PCC 6301]
gi|81301068|ref|YP_401276.1| 16S rRNA-processing protein RimM [Synechococcus elongatus PCC 7942]
gi|67461291|sp|Q5N0Z1.1|RIMM_SYNP6 RecName: Full=Ribosome maturation factor RimM
gi|109893061|sp|Q31KY0.1|RIMM_SYNE7 RecName: Full=Ribosome maturation factor RimM
gi|56686807|dbj|BAD80029.1| 16S rRNA processing protein RimM [Synechococcus elongatus PCC 6301]
gi|81169949|gb|ABB58289.1| 16S rRNA processing protein RimM [Synechococcus elongatus PCC 7942]
Length = 182
Score = 128 bits (321), Expect = 1e-26, Method: Composition-based stats.
Identities = 81/192 (42%), Positives = 114/192 (59%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV-KLIDGREHPGQ 138
+G + + GL+GE+ V PS+DFPE RF PG RWLR+ R+T EV +L GR G+
Sbjct: 15 IGQIVAPQGLRGEMRVNPSSDFPE-RFLIPGPRWLRRP---RQTEPEVVELERGRAIAGK 70
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+I+ GI + EQA L G LL DRPEL++GEF+ DL+ + V+ + + +G
Sbjct: 71 NLYIVQLAGITSREQAEALRGCELLVPASDRPELDEGEFHVLDLIDLSVIDQASSTPLGI 130
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V ++G NDLL V+E ++ GR V+IPFVE IVP+VD+
Sbjct: 131 VRDVVSAG-NDLL---------VVELTD----------GREVYIPFVEAIVPVVDLAQGR 170
Query: 259 MQITPPKGLLEL 270
++ITPP GLLEL
Sbjct: 171 IEITPPPGLLEL 182
>gi|33864685|ref|NP_896244.1| 16S rRNA-processing protein RimM [Synechococcus sp. WH 8102]
gi|46397680|sp|Q7U9V4.1|RIMM_SYNPX RecName: Full=Ribosome maturation factor RimM
gi|33632208|emb|CAE06664.1| possible 16S rRNA processing protein RimM [Synechococcus sp. WH
8102]
Length = 177
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 23/180 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + GLQGE+ V P++DFPE RFTTPG+RWLR + G +EV+L GR+
Sbjct: 6 DWLIVGKLVGAQGLQGELRVNPASDFPE-RFTTPGSRWLRGRKGGEP--KEVQLKKGRQL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +IL EGID+ + A LVG LL DRPELE+GEF+ DLVG+ +
Sbjct: 63 PGKSLFILRLEGIDSRDAAEALVGQELLVPASDRPELEEGEFHLLDLVGLEARLHADEPA 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ SG NDLL + ++GR + IPFVE IVP V +
Sbjct: 123 IGVVTDLI-SGGNDLLELKT-------------------SAGRTLLIPFVESIVPEVHLE 162
>gi|87123200|ref|ZP_01079051.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
gi|86168920|gb|EAQ70176.1| 16S rRNA processing protein RimM [Synechococcus sp. RS9917]
Length = 182
Score = 127 bits (319), Expect = 2e-26, Method: Composition-based stats.
Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 24/179 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V GL GE+ + P+++FPE RFTTPGTRWL Q G E R V+L GR+
Sbjct: 12 DWLAVGTVVGAQGLGGELRINPASEFPE-RFTTPGTRWL--QARGGEP-RPVELSSGRQL 67
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++ +++ F+G++ A LVG TLL R DRP L DGEF+ DLVG+ V ++ E
Sbjct: 68 PGKQLFVVRFDGVNDRSAAEALVGQTLLVRADDRPALADGEFHLLDLVGLEVRLQADAEA 127
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G+V ++ SG NDLL V GR IPFVE IVP V +
Sbjct: 128 IGSVTDLI-SGGNDLLEV-------------------ERTDGRKQLIPFVEAIVPEVHL 166
>gi|425440675|ref|ZP_18820973.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9717]
gi|389718832|emb|CCH97262.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9717]
Length = 192
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGMRGIQGPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ S + S +SD+ R + +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANL----ASVKKKSPSSDSEARAL-VPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I PP GLLE+NL
Sbjct: 175 AARIEIAPPPGLLEINL 191
>gi|158335184|ref|YP_001516356.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
gi|209573538|sp|B0CFM3.1|RIMM_ACAM1 RecName: Full=Ribosome maturation factor RimM
gi|158305425|gb|ABW27042.1| 16S rRNA processing protein RimM [Acaryochloris marina MBIC11017]
Length = 192
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + HGL GE+ V P +DFPE RFT PG RWL T E++LI GR
Sbjct: 19 EWLEVGTIVGAHGLNGEVKVYPDSDFPE-RFTQPGLRWLVSPTEA-STPEEIQLIRGRFV 76
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +++ ++ +Q+ L G+ LL R DRP L +GE+Y DL+G+ VV +T +
Sbjct: 77 ERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAV 136
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG+VV++ ++G NDLL + D + + + +PFV +VPIVD+
Sbjct: 137 VGSVVSLASAG-NDLLEIQL------------------DNTTKTILLPFVSALVPIVDIA 177
Query: 256 GREMQITPPKGLL 268
+ ++ITPPKGL+
Sbjct: 178 TKRIEITPPKGLI 190
>gi|317968417|ref|ZP_07969807.1| 16S rRNA-processing protein RimM [Synechococcus sp. CB0205]
Length = 198
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 110/198 (55%), Gaps = 23/198 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI---REVKLIDG 132
+ + VG + + GL+GE+ V P +DFPE RFT G RWLR R RE++L+ G
Sbjct: 11 ELLVVGKIVAAQGLRGELRVNPLSDFPE-RFTQAGPRWLRAPAQKRGPAPEPREIQLLSG 69
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R PG++ +++ EGID A VG LL RP+L GEF+ DL+G+ V + ET
Sbjct: 70 RRLPGKELFVIRIEGIDDRSSAEACVGQELLVPSDQRPKLSKGEFHLLDLMGLEVRLLET 129
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G +G V ++ ++G NDLL V + G ++ +WIPFVE IVP V
Sbjct: 130 GTPIGQVQDLLHAG-NDLLEVQ-------LSGKKQP-----------LWIPFVESIVPRV 170
Query: 253 DMNGREMQITPPKGLLEL 270
++ + ITPP GLLEL
Sbjct: 171 ELEEGWIGITPPPGLLEL 188
>gi|425455146|ref|ZP_18834871.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9807]
gi|389804027|emb|CCI17122.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9807]
Length = 196
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R +++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGIQRPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +I+ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYIIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ ++ +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVKKKSPSSDSEATA-----LVPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I+PP GLLE+NL
Sbjct: 175 AGRIEISPPPGLLEINL 191
>gi|78211682|ref|YP_380461.1| 16S rRNA-processing protein [Synechococcus sp. CC9605]
gi|109893063|sp|Q3ANC6.1|RIMM_SYNSC RecName: Full=Ribosome maturation factor RimM
gi|78196141|gb|ABB33906.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9605]
Length = 177
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 102/179 (56%), Gaps = 23/179 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + +V GL GE+ V P++DFPE RFT PG RWLR + G + E++L GR+
Sbjct: 6 DWLSVGKIVAVQGLLGELRVNPASDFPE-RFTVPGPRWLRSRQGGEPS--EIQLKKGRQL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ FEG+D A LVG LL DRPEL +GEF+ DLVG++ + G
Sbjct: 63 PGKSLFVVRFEGVDNRSAAETLVGMELLVPADDRPELAEGEFHLLDLVGLKARLTADGPA 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV ++ SG NDLL + + GR + IPFVE IVP V +
Sbjct: 123 IGTVSDLI-SGGNDLLEITT-------------------SDGRKLLIPFVEAIVPEVKL 161
>gi|428780513|ref|YP_007172299.1| 16S rRNA processing protein RimM [Dactylococcopsis salina PCC 8305]
gi|428694792|gb|AFZ50942.1| 16S rRNA processing protein RimM [Dactylococcopsis salina PCC 8305]
Length = 183
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +++G V S HG++GE+ V ++DFPE RF PG R L++ V L G
Sbjct: 4 DLIEIGTVVSPHGIKGEVKVYTNSDFPE-RFEKPGKRLLKRP--NSSQCEWVTLKRGYYL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ E I QA L S L + DRP+LE E++ DL+G+ V+ +ET
Sbjct: 61 PGKSMYVVMLEEITDRNQAEELCKSKLFVEKHDRPQLEANEYHVDDLIGLTVIDQETKSK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V++++ +G NDLL V+E E S A V +PFVE+IVPIVD+N
Sbjct: 121 IGQVIDIYAAG-NDLL---------VVELEEHLSEKP--APDNRVLVPFVEDIVPIVDIN 168
Query: 256 GREMQITPPKGLLEL 270
R++Q+ P GLLEL
Sbjct: 169 NRQLQVKLPVGLLEL 183
>gi|443314255|ref|ZP_21043830.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 6406]
gi|442786154|gb|ELR95919.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 6406]
Length = 201
Score = 126 bits (316), Expect = 5e-26, Method: Composition-based stats.
Identities = 79/200 (39%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V S GL+GE+ + P TDFPE RF TPG RWLR+Q + + L+ GR G+
Sbjct: 5 IGRVVSSQGLKGEVRIYPDTDFPE-RFLTPGKRWLRRQPNAEPEL--LTLVTGRCLEGKG 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++ F I EQA L + +L DRP LE GEF+ DLVG+ V ++ GE +G V
Sbjct: 62 LYVVQFAEIQQREQADALKNAEILVSAQDRPPLEPGEFHVSDLVGLEVRLQTNGEAIGIV 121
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL----------VWIPFVEEIV 249
V++F +G NDLL V ++ + G E S+ +S R V +PFV EIV
Sbjct: 122 VDLFAAG-NDLLAVELFAQTDPKAGGEPVKVSSGRSSSRSPKTSSRKLLPVLVPFVHEIV 180
Query: 250 PIVDMNGREMQITPPKGLLE 269
P V++ ++I PP GLL+
Sbjct: 181 PTVNLAEGFLEINPPPGLLD 200
>gi|425444578|ref|ZP_18824625.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9443]
gi|389735644|emb|CCI00879.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9443]
Length = 196
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 119/197 (60%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGIQGPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +I+ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYIIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ ++ +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVKKKSPSSDSEATA-----LVPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I+PP GLLE+NL
Sbjct: 175 AGRIEISPPPGLLEINL 191
>gi|427725382|ref|YP_007072659.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 7376]
gi|427357102|gb|AFY39825.1| 16S rRNA processing protein RimM [Leptolyngbya sp. PCC 7376]
Length = 179
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 113/193 (58%), Gaps = 24/193 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ +G V + GL+GEI V PSTDFPE RF G RWLR + ++ V+L GR
Sbjct: 5 EWIVIGKVVAAQGLKGEIRVNPSTDFPE-RFEVAGQRWLR---MPNQSPESVELERGRRV 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ FE + A L G+ +L R GDRPELE+GE++ DL+G+ V+ +T E
Sbjct: 61 PGKNIFVVKFEHVVDRNHAETLRGAEILVRAGDRPELEEGEYHVSDLIGLNVLDVDTKEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +++++G DLL V +DA+ + +PFV+EIVP+VD+
Sbjct: 121 LGIVSDIYSAG-QDLLEV-------------------TDANKQKHLVPFVKEIVPVVDLV 160
Query: 256 GREMQITPPKGLL 268
+++++ P GL
Sbjct: 161 EQQLEVNAPPGLF 173
>gi|428299975|ref|YP_007138281.1| 16S rRNA processing protein RimM [Calothrix sp. PCC 6303]
gi|428236519|gb|AFZ02309.1| 16S rRNA processing protein RimM [Calothrix sp. PCC 6303]
Length = 223
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 11/195 (5%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL+GE+ V P TDFPE RF PG RWL + + ++L GR
Sbjct: 39 WLAIGTIVAPQGLRGEMRVYPDTDFPE-RFEEPGKRWLLKA--NSKQPEAIELTSGRYIE 95
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++T +GI+ Q L G LL E DRP L + E + DL+G++V M+ +G+ +
Sbjct: 96 GKNLYVITIKGINDCNQVEELRGCKLLVPEDDRPPLGENEHHIADLIGLQVFMQTSGDYI 155
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G ++ + +G N LL + + S+E + ++ + + IPFV+EIVP+VD+
Sbjct: 156 GKIIRLIPAG-NYLLEIQPQP-----DSSQE--ETVNNQPRKNILIPFVKEIVPVVDLVA 207
Query: 257 REMQITPPKGLLELN 271
+ ++ITPP+GLLE+N
Sbjct: 208 KRVEITPPEGLLEIN 222
>gi|255077074|ref|XP_002502189.1| predicted protein [Micromonas sp. RCC299]
gi|226517454|gb|ACO63447.1| predicted protein [Micromonas sp. RCC299]
Length = 237
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 28/232 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR----------ETIR 125
+ V G V S HGL+GE+ V P TDF E RF +P T++L + GR ++
Sbjct: 1 ELVQTGAVVSAHGLRGEVRVMPFTDFVEERFFSPNTQYLEDEAQGRGVGGEYNKAPGSVS 60
Query: 126 EVKLIDGRE--HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-------DGE 176
+++++ GRE G+ ++ +G++ A L+G L DRP+L D E
Sbjct: 61 KIRIVSGREVTSQGRVECLIKIKGVNDRNAAAALIGRRLFVSSTDRPQLREEQNGDGDDE 120
Query: 177 FYTRDLVGMRVVMKETGELVGTVVNVF-NSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235
FY +L G V+MKE G+ VG V++++ +G +DLL + SV + S+ +S A
Sbjct: 121 FYASELEGCEVIMKEDGKHVGVVIDIYRGAGEHDLLKI----SVPPLPSSDGEASEEKPA 176
Query: 236 SGR----LVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERR 283
+ + V++PFV+EIVP+VD+ ++ITPP GLL+L ++ + + + R
Sbjct: 177 TNKGPSEHVFVPFVKEIVPVVDLARGVLEITPPAGLLDLRQKSKPKKRPKAR 228
>gi|116074427|ref|ZP_01471689.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
gi|116069732|gb|EAU75484.1| 16S rRNA-processing protein [Synechococcus sp. RS9916]
Length = 187
Score = 124 bits (312), Expect = 1e-25, Method: Composition-based stats.
Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 26/194 (13%)
Query: 62 SATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR 121
SA V TS+ D++ VG V V GL+GE+ + P+++FPE RFT PG+RWL+ +
Sbjct: 5 SAGAPAVPTSSE--DWLPVGKVVGVQGLKGELRINPASEFPE-RFTDPGSRWLKAR---G 58
Query: 122 ETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRD 181
RE++L GR+ PG+ +++ F GID E A L+G TL+ DRPELE+GEF+ D
Sbjct: 59 SAPREMELKSGRQLPGRSVFVVRFAGIDNREAAEALIGQTLMVPADDRPELEEGEFHLLD 118
Query: 182 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVW 241
LVG+ + G+ +GTV ++ SG N+LL + G +
Sbjct: 119 LVGLEARLSADGDAIGTVSDLI-SGGNELLEL-------------------KTPDGDTLM 158
Query: 242 IPFVEEIVPIVDMN 255
+PFVE IVP V ++
Sbjct: 159 VPFVEAIVPEVHVD 172
>gi|425458729|ref|ZP_18838217.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9808]
gi|389824875|emb|CCI25819.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9808]
Length = 192
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 117/196 (59%), Gaps = 9/196 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R + Q G E IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGI-QGTQGGE-IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ + +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVRKKSPSSDSKATAL-----VPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELN 271
++I PP GLLE+N
Sbjct: 175 AARIEIAPPPGLLEIN 190
>gi|113953430|ref|YP_729432.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9311]
gi|123132772|sp|Q0IDP0.1|RIMM_SYNS3 RecName: Full=Ribosome maturation factor RimM
gi|113880781|gb|ABI45739.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9311]
Length = 187
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + GL+GE+ + P++DFPE RFT PGTRWL+ + +EV+L++GR+
Sbjct: 17 DWLPVGTLVGAQGLKGELRLNPASDFPE-RFTEPGTRWLQAK---GSAPKEVELLEGRQL 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ +G++ A LVG T+L DRPEL +GEF+ DLVG+ + + E
Sbjct: 73 PGKSLYVVRLKGVNNRASAEALVGCTVLVPAKDRPELAEGEFHLLDLVGLEARLAGSDEP 132
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV N+ SG NDLL + SG+ V +PFVE IVP V +
Sbjct: 133 IGTVSNLI-SGGNDLLEIKLN-------------------SGKTVLVPFVEAIVPDVQL 171
>gi|428313306|ref|YP_007124283.1| 16S rRNA processing protein RimM [Microcoleus sp. PCC 7113]
gi|428254918|gb|AFZ20877.1| 16S rRNA processing protein RimM [Microcoleus sp. PCC 7113]
Length = 212
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL GE+ V P++DFPE RF PG R+L++ G + ++L+ GR
Sbjct: 5 DWLEIGTIVAPQGLNGELRVYPNSDFPE-RFEEPGKRFLKRS--GETEPQPIELLSGRYV 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ G++ +QA L S LL DRPEL + E++ DL+ + V + T EL
Sbjct: 62 PGKDLYLVKLAGVENRDQAEALRDSVLLVPASDRPELGEDEYHVMDLIDLEVFNQLTSEL 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL-----------VWIPF 244
VG VV+V +G N LL V + EA+ + R V IPF
Sbjct: 122 VGVVVDVIPAG-NSLLEVKLHEQPEPEPAKPEAAPPTRTSKIRKLKRKKEKKPVTVLIPF 180
Query: 245 VEEIVPIVDMNGREMQITPPKGLLELN 271
V+ I P+VD+ ++ITPP GLLE+N
Sbjct: 181 VKAIAPVVDLQRGRIEITPPPGLLEVN 207
>gi|422302944|ref|ZP_16390302.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9806]
gi|389792166|emb|CCI12097.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9806]
Length = 192
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 120/197 (60%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGIQGPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRRYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ S + S +SD+ R + +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANL----ASVKKKSPSSDSEARSL-VPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I+PP GLLE+NL
Sbjct: 175 AGRIEISPPPGLLEINL 191
>gi|428224279|ref|YP_007108376.1| 16S rRNA processing protein RimM [Geitlerinema sp. PCC 7407]
gi|427984180|gb|AFY65324.1| 16S rRNA processing protein RimM [Geitlerinema sp. PCC 7407]
Length = 219
Score = 123 bits (308), Expect = 4e-25, Method: Composition-based stats.
Identities = 80/209 (38%), Positives = 115/209 (55%), Gaps = 21/209 (10%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + + GL+GE+ V PSTDFPE RF PG RWL + G+ + V+L++G E PG+
Sbjct: 14 IGRIVAPQGLRGELRVYPSTDFPE-RFEEPGQRWLLRP--GQTEPQAVQLVEGYEVPGKG 70
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++ + QA L S LL E DRP LE EF+ DL+G+ V+ + T L+GTV
Sbjct: 71 LYVVKLAEVSDRNQAEALRDSLLLVPESDRPPLEADEFHVVDLLGLSVIEQATQTLLGTV 130
Query: 200 VNVFNSGANDLLHVM-----CYSSVNVIEGSE--EASSSASDASGR----------LVWI 242
+V +G NDLL V S E +E E + + R V I
Sbjct: 131 KDVIPAG-NDLLEVQLDPAWLASHAPAPEAAETPEPETDPENKGDRKARPRKAKPPTVLI 189
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLLELN 271
PFV+EIVP+VD+ + +++ PP GLLE+N
Sbjct: 190 PFVKEIVPVVDLVQKRLEVVPPAGLLEIN 218
>gi|116071641|ref|ZP_01468909.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
gi|116065264|gb|EAU71022.1| 16S rRNA-processing protein [Synechococcus sp. BL107]
Length = 180
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + V GLQGE+ V P++DFPE RFT PG RW+R + REV+L GR+
Sbjct: 10 EWLTVGKIVGVQGLQGELRVNPASDFPE-RFTVPGPRWVRSK---GSAPREVQLKSGRQL 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ + +D A LVGS + DRP L +GEF+ DLVG+ + +
Sbjct: 66 PGKSLFVVRLDSVDNRNAAEALVGSDWMVPADDRPALGEGEFHLLDLVGLEARLSLDSDP 125
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL + ++G + IPFVE IVP V +
Sbjct: 126 IGTVTDLI-SGGNDLLQI-------------------KRSNGSTLLIPFVEAIVPEVHLK 165
Query: 256 GREMQITPPKGLLEL 270
+ +TPP GL++L
Sbjct: 166 DGWLLLTPPPGLMDL 180
>gi|428771065|ref|YP_007162855.1| 16S rRNA processing protein RimM [Cyanobacterium aponinum PCC
10605]
gi|428685344|gb|AFZ54811.1| 16S rRNA processing protein RimM [Cyanobacterium aponinum PCC
10605]
Length = 214
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + +G + + GL+GE+ VK +DFPE RF T G RW+ ++ + V L+ GR+
Sbjct: 5 DLIAIGTIVAPQGLKGELKVKTDSDFPE-RFETAGVRWITSP--SQKQPQPVDLLQGRQI 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +I+ + QA L GSTL + ++P LE GE++ DL+ + V ++TGE
Sbjct: 62 PGKNIFIIKLAQVCDRNQAETLKGSTLYVEKTEKPYLEPGEYHVADLINLEVYNQQTGEN 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS--------------GRLVW 241
+G V++V ++G ND+L V + + +EE S S +
Sbjct: 122 IGIVIDVLSAG-NDILEVKLHKQPEI--KTEEKELDISKISRISKRKKVKIKKPKPVTIL 178
Query: 242 IPFVEEIVPIVDMNGREMQITPPKGLL 268
IPFVEEIVPIVD+ +++ PP GLL
Sbjct: 179 IPFVEEIVPIVDLENCRIEVNPPTGLL 205
>gi|78183760|ref|YP_376194.1| 16S rRNA-processing protein RimM [Synechococcus sp. CC9902]
gi|109893062|sp|Q3B0H7.1|RIMM_SYNS9 RecName: Full=Ribosome maturation factor RimM
gi|78168054|gb|ABB25151.1| 16S rRNA processing protein RimM [Synechococcus sp. CC9902]
Length = 180
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + V GLQGE+ V P++DFPE RFT PG RW+R + RE++L GR+
Sbjct: 10 EWLTVGKIVGVQGLQGELRVNPASDFPE-RFTVPGPRWVRSK---GSPPREMQLKTGRQL 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ + +D + A LVGS + DRP+L +GEF+ DLVG+ + +
Sbjct: 66 PGKSLFVVRLDSVDNRDAAEALVGSDWMVPADDRPQLGEGEFHLLDLVGLEARLSPDSDP 125
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL + +D S L IPFVE IVP V +
Sbjct: 126 IGTVTDLI-SGGNDLLEI-----------------KRTDGSKLL--IPFVEAIVPEVHLK 165
Query: 256 GREMQITPPKGLLEL 270
+ +TPP GL++L
Sbjct: 166 DGWLLLTPPPGLMDL 180
>gi|159904270|ref|YP_001551614.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9211]
gi|238687125|sp|A9BD47.1|RIMM_PROM4 RecName: Full=Ribosome maturation factor RimM
gi|159889446|gb|ABX09660.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9211]
Length = 176
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + GL+GE+ V PS+DFPE RF PG RWL++ E ++L GR+ P
Sbjct: 7 WLTIGKLVGAQGLRGEVKVNPSSDFPE-RFINPGERWLQKNT---EEPSRIELKSGRQLP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I++F GI +A +VG+ LL +P+L++GEF+ DL+G++ + G V
Sbjct: 63 GKSIYIVSFIGITDRNKAESIVGNKLLVPSDQKPKLKEGEFHLVDLLGLKAKFTQDGSDV 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+++ ++G NDLL + G+ V IPFV+EIVP++++
Sbjct: 123 GEVIDLTSAG-NDLLVIKL-------------------VEGKTVLIPFVKEIVPVINLKQ 162
Query: 257 REMQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 163 GWLLIKPPPGLLEL 176
>gi|425470239|ref|ZP_18849109.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9701]
gi|389884214|emb|CCI35474.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9701]
Length = 192
Score = 121 bits (304), Expect = 1e-24, Method: Composition-based stats.
Identities = 74/197 (37%), Positives = 121/197 (61%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R + Q G E I+E+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGI-QGAQGGE-IQEITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++F +G ND+L V +++ ++ +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDIFWAG-NDILAVQLEANLAPLKKKSSSSDSEARA-----LVPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++ITPP GLLE+NL
Sbjct: 175 AARIEITPPPGLLEINL 191
>gi|170077861|ref|YP_001734499.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
gi|209573625|sp|B1XKY8.1|RIMM_SYNP2 RecName: Full=Ribosome maturation factor RimM
gi|169885530|gb|ACA99243.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7002]
Length = 175
Score = 121 bits (303), Expect = 1e-24, Method: Composition-based stats.
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G V + GL+GE+ + PSTDFPE RF PG RWL+ L + + V+L GR+
Sbjct: 5 DWIIIGQVVAAQGLKGEVRINPSTDFPE-RFEVPGQRWLQ---LPNQDPQSVELERGRQI 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ FE I QA + G+ +L R GDRPELE E++ DL+G+ V T
Sbjct: 61 PGKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +++ + A D+L V +DA+ + +PFV+ IVP+VD+
Sbjct: 121 LGIVSDLY-TAAQDVLEV-------------------TDANQKKHLVPFVKAIVPVVDLV 160
Query: 256 GREMQITPPKGLLEL 270
+++ P GL E+
Sbjct: 161 ENRLEVDAPPGLFEI 175
>gi|334118434|ref|ZP_08492523.1| Ribosome maturation factor rimM [Microcoleus vaginatus FGP-2]
gi|333459441|gb|EGK88054.1| Ribosome maturation factor rimM [Microcoleus vaginatus FGP-2]
Length = 213
Score = 121 bits (303), Expect = 2e-24, Method: Composition-based stats.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL GE+ V P +DFPE RF PG RW+ + + ++ + GR
Sbjct: 3 EWIEIGKIVAAQGLDGEVRVYPDSDFPE-RFIEPGKRWILRP--NKSEPEPIEFLGGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ + + EG++ + A L G L + DRP LE EFY +DL+GM V + TGE+
Sbjct: 60 PGKGLYAVEVEGVEDRDSAEALRGCKLFVEKTDRPYLESDEFYVQDLIGMEVFNQLTGEI 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSE-----EASSSASDASGR------------ 238
+G V ++ +G NDLL V + I +E + + ++A R
Sbjct: 120 LGKVSDIIPAG-NDLLEVETNLTPPEIVAAELEKPKQPETPKANADPRNTRKPRKIRVKE 178
Query: 239 ----LVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
+ IPFVEEIVPIVD+ ++I PP GLLE
Sbjct: 179 PKSTKILIPFVEEIVPIVDLEQGRIEIVPPPGLLE 213
>gi|390440581|ref|ZP_10228808.1| Ribosome maturation factor rimM [Microcystis sp. T1-4]
gi|389836111|emb|CCI32934.1| Ribosome maturation factor rimM [Microcystis sp. T1-4]
Length = 192
Score = 120 bits (302), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 119/197 (60%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GR+
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGIQGPQGGE--IREIALLRGRDL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P LE E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLEADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ ++ +S S + A IPFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLAPLKKKSSSSDSGARA-----LIPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I+PP GLLE+NL
Sbjct: 175 AARIEISPPPGLLEINL 191
>gi|22298609|ref|NP_681856.1| 16S rRNA-processing protein RimM [Thermosynechococcus elongatus
BP-1]
gi|32129963|sp|Q8DK05.1|RIMM_THEEB RecName: Full=Ribosome maturation factor RimM
gi|22294789|dbj|BAC08618.1| tlr1065 [Thermosynechococcus elongatus BP-1]
Length = 183
Score = 120 bits (301), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 105/189 (55%), Gaps = 20/189 (10%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + HGL+GE+ VKP +DFPE RFT PG RWLR + V L+ GR P +
Sbjct: 14 IGQIVGAHGLRGEVKVKPFSDFPE-RFTVPGCRWLRSP--RQPQPYAVTLLRGRFLPRAE 70
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++TF I A L G+ +L DRP L E++ DL+G+ V + GE VG V
Sbjct: 71 QFVVTFAEISDRTAAEALKGAEILVPASDRPPLAANEYHLMDLIGLAVYHQ--GERVGEV 128
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + N+G NDLL V +++ + +A S V+IPFV IVP+VD+ R +
Sbjct: 129 VGLVNAG-NDLLE------VQLLDPAPKAPQS--------VYIPFVPAIVPVVDLAARRI 173
Query: 260 QITPPKGLL 268
+I PP GLL
Sbjct: 174 EIDPPLGLL 182
>gi|254424032|ref|ZP_05037750.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7335]
gi|196191521|gb|EDX86485.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7335]
Length = 229
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 35/225 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G + HGL G I V P +DFPE RF PG RW+ + I +LI GR
Sbjct: 9 DWLLIGRIVGAHGLNGHIKVYPESDFPE-RFIEPGERWIEKPGANPTPI---QLISGRYL 64
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +++ GID +QA L G+ L+ GDR + GEF+ DL+G+RV+++
Sbjct: 65 EGKNIYLVKLAGIDFRDQAEDLSGAKLVVPVGDRLPVAPGEFHVSDLIGLRVILQSDQTA 124
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIE----------------GSEEASSSASDASGRL 239
+GT+ NVF +G +DLL V ++ + + S+ S S A+ +L
Sbjct: 125 IGTITNVFTTG-HDLLEVSLPTAESTSDLDTASKRTEPERALSLESKHHPSLRSKAAQKL 183
Query: 240 --------------VWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
+ IPFVE+IVP+VD+ ++ITPP GL+EL
Sbjct: 184 RRKARRAKKKQTKTLLIPFVEDIVPVVDVLAGRVEITPPAGLIEL 228
>gi|352095204|ref|ZP_08956307.1| Ribosome maturation factor rimM [Synechococcus sp. WH 8016]
gi|351679215|gb|EHA62357.1| Ribosome maturation factor rimM [Synechococcus sp. WH 8016]
Length = 187
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 24/179 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + GL+GE+ + P++DFPE RFT PG RWL+ + +EV+L++GR+
Sbjct: 17 EWLPVGQLVGAQGLRGELRLNPASDFPE-RFTEPGPRWLQAK---GSAPKEVELLEGRQL 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ +G++ A LVG T+L DRPEL DGEF+ DLVG+ + + E
Sbjct: 73 PGKSLYVVRLKGVNNRASAEALVGHTVLVPAEDRPELADGEFHLLDLVGLEARLAGSDEP 132
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV N+ SG NDLL + SG+ V +PFVE IVP V +
Sbjct: 133 IGTVSNLI-SGGNDLLEIKLQ-------------------SGKTVLVPFVEAIVPEVQL 171
>gi|282897420|ref|ZP_06305422.1| 16S rRNA processing protein RimM [Raphidiopsis brookii D9]
gi|281198072|gb|EFA72966.1| 16S rRNA processing protein RimM [Raphidiopsis brookii D9]
Length = 164
Score = 120 bits (300), Expect = 3e-24, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 16/179 (8%)
Query: 93 ISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVE 152
+ V P TDFPE RF PGTRWL + G + + V+L+ GR G+ +++ GI
Sbjct: 1 MRVYPQTDFPE-RFEEPGTRWL--LLPGEPSPQPVQLLHGRYVEGKNLYVIKLHGIGDRN 57
Query: 153 QARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLH 212
A L L DR EL GEF+ DL+G+ V M+E+GE +G V ++ SG +DLL
Sbjct: 58 AAENLREGRLFVPISDRVELGPGEFHVIDLIGLPVFMQESGERIGDVTDILPSG-HDLLE 116
Query: 213 VMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELN 271
V C S N + G+ V IPFV EIVP+VD+ R ++ITPP GLL +N
Sbjct: 117 VKCDPSWN------------RNLGGKTVLIPFVMEIVPVVDLANRRIEITPPPGLLSIN 163
>gi|303280539|ref|XP_003059562.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459398|gb|EEH56694.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 193
Score = 120 bits (300), Expect = 4e-24, Method: Composition-based stats.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 36/209 (17%)
Query: 81 GYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE----------TIREVKLI 130
G + S HGL+GE+ V P TDF E RF +P T+WL + GR T+ ++ +
Sbjct: 1 GAIVSAHGLRGEVRVMPFTDFVEERFFSPCTQWLEDEAQGRSASGEYNKPAGTLSKINIS 60
Query: 131 DGRE--HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-------DGEFYTRD 181
GRE G+ I+ G++ A L+G + +RP L D +FY ++
Sbjct: 61 GGREVTTKGRNECIVKIRGVNDRNAAEALLGRRMYVLASERPSLREADVGDGDDDFYAQE 120
Query: 182 LVGMRVVMKETGELVGTVVNVF-NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
L G+RVV+KE G+ VG V++VF +G +DLL V + G V
Sbjct: 121 LQGLRVVLKEGGDEVGKVIDVFRGAGTHDLLKV----------------ERKTKPPGEFV 164
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLE 269
++PFV++IVP VD+ ++ITPP GLL+
Sbjct: 165 YVPFVKDIVPTVDVPNGFLEITPPPGLLD 193
>gi|425434024|ref|ZP_18814496.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9432]
gi|443663862|ref|ZP_21133250.1| 16S rRNA processing protein RimM [Microcystis aeruginosa
DIANCHI905]
gi|159028219|emb|CAO88029.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389678223|emb|CCH92900.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 9432]
gi|443331744|gb|ELS46388.1| 16S rRNA processing protein RimM [Microcystis aeruginosa
DIANCHI905]
Length = 192
Score = 119 bits (299), Expect = 4e-24, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 120/196 (61%), Gaps = 9/196 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R + Q+ G E IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGI-QETQGGE-IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA+ L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAQALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ ++ +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVKKKSPSSDSKATA-----LVPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELN 271
++I PP GLLE+N
Sbjct: 175 AARIEIAPPPGLLEIN 190
>gi|411116986|ref|ZP_11389473.1| 16S rRNA processing protein RimM [Oscillatoriales cyanobacterium
JSC-12]
gi|410713089|gb|EKQ70590.1| 16S rRNA processing protein RimM [Oscillatoriales cyanobacterium
JSC-12]
Length = 180
Score = 119 bits (299), Expect = 4e-24, Method: Composition-based stats.
Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 17/193 (8%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+++G + S GL+GE+ V P++DFP+ RF PG RWL + G + +KLI GR
Sbjct: 5 FLEIGKIVSPQGLRGEVRVYPNSDFPQ-RFLEPGQRWLLRP--GETQPQPIKLIKGRYLD 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +++ E I +QA L LL E DRP L + EF+ DL+G++V + L+
Sbjct: 62 SKGLYVVQLEAITDRDQAEALRDCRLLVPESDRPPLNEDEFHVSDLLGLKVFNQADQTLI 121
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VVNV +G NDLL V + S S G V IPFV+ IVP++++
Sbjct: 122 GEVVNVLTAG-NDLLEV------------QRQPSPDSQKPGT-VLIPFVKAIVPVINLAQ 167
Query: 257 REMQITPPKGLLE 269
+ ++ITPP GL++
Sbjct: 168 QRIEITPPTGLID 180
>gi|220910318|ref|YP_002485629.1| 16S rRNA-processing protein RimM [Cyanothece sp. PCC 7425]
gi|219866929|gb|ACL47268.1| 16S rRNA processing protein RimM [Cyanothece sp. PCC 7425]
Length = 180
Score = 119 bits (299), Expect = 4e-24, Method: Composition-based stats.
Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++V++G + + GL GE+ VKP +DFPE RF PG RWL++ + ++L+ GR
Sbjct: 8 EWVEIGTIVAAQGLGGEVRVKPDSDFPE-RFIRPGQRWLQRS--PQSLPEPIRLLQGRLL 64
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P + +IL GI+ QA L GS LL DRP+L GEFY +DL+G+ V +
Sbjct: 65 PRKGIYILKLAGIENRTQAEALKGSLLLVPHSDRPKLAPGEFYLQDLLGLEVFEQGNQTY 124
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + V +G NDLL V A V IP V EIVP++D+
Sbjct: 125 VGVITGVIPAG-NDLLEV-----------------QPPQADRPPVLIPLVREIVPLIDLG 166
Query: 256 GREMQITPPKGLL 268
+ ++I PP GLL
Sbjct: 167 AQRVEINPPPGLL 179
>gi|434387216|ref|YP_007097827.1| 16S rRNA processing protein RimM [Chamaesiphon minutus PCC 6605]
gi|428018206|gb|AFY94300.1| 16S rRNA processing protein RimM [Chamaesiphon minutus PCC 6605]
Length = 218
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 23/196 (11%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI--REVKLIDGRE 134
++++G + G++GE+ V P++DFPE RF G RWL G + R ++L G E
Sbjct: 26 WMEIGSIVGAQGIKGEVKVYPNSDFPE-RFERAGERWL----WGATDVEPRSIQLQKGYE 80
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ +++ GI+T QA L G LL DRP L GE++++DL+G+ V TG
Sbjct: 81 IPGKGLFVVQLAGIETRSQAENLRGQMLLLPATDRPRLSPGEYHSQDLIGLPVFHGVTGV 140
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV ++F +G L+ V+V G + + + IPFV+EIVP+VD+
Sbjct: 141 EVGTVADIFTAGHEILV-------VSVPNGDGKIAEAM---------IPFVKEIVPVVDL 184
Query: 255 NGREMQITPPKGLLEL 270
R ++I PP GLLEL
Sbjct: 185 ANRRIEILPPPGLLEL 200
>gi|425451961|ref|ZP_18831780.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 7941]
gi|440753230|ref|ZP_20932433.1| 16S rRNA processing protein RimM [Microcystis aeruginosa TAIHU98]
gi|389766453|emb|CCI07906.1| Ribosome maturation factor rimM [Microcystis aeruginosa PCC 7941]
gi|440177723|gb|ELP56996.1| 16S rRNA processing protein RimM [Microcystis aeruginosa TAIHU98]
Length = 192
Score = 119 bits (297), Expect = 8e-24, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 9/196 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R + Q G E IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGIRGI-QGTQGGE-IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA+ L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAQALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ +G ND+L V +++ ++ +S S + A +PFV+EIVP+VD+
Sbjct: 121 IGVVVDILWAG-NDILAVQLEANLASVKKKSPSSDSKATA-----LVPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELN 271
++I PP GLLE+N
Sbjct: 175 AARIEIAPPPGLLEIN 190
>gi|428320429|ref|YP_007118311.1| Ribosome maturation factor rimM [Oscillatoria nigro-viridis PCC
7112]
gi|428244109|gb|AFZ09895.1| Ribosome maturation factor rimM [Oscillatoria nigro-viridis PCC
7112]
Length = 213
Score = 118 bits (295), Expect = 1e-23, Method: Composition-based stats.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL GE+ V P +DFPE RF PG RW+ + + ++ + GR
Sbjct: 3 EWIEIGKIVAAQGLDGEVRVYPDSDFPE-RFIEPGKRWILRP--NKSEPEPIEFLGGRYI 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ + + EG++ + A L G L + DRP LE EFY +DL+GM V + TGE+
Sbjct: 60 PGKGLYAVEVEGVEDRDSAEALRGCKLFVEKTDRPYLEPDEFYVQDLIGMEVYNQLTGEI 119
Query: 196 VGTVVNVFNSGANDLLHVMC-----YSSVNVIEGSEEASSSASDASGR------------ 238
+G V ++ +G NDLL V + +E ++ + +A R
Sbjct: 120 LGKVSDIIPAG-NDLLEVETNLTAPETVAAELEKPKQPETPQPNADPRNTRKPRKIRVKE 178
Query: 239 ----LVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
+ IPFVEEIVP+VD+ ++I PP GLL+
Sbjct: 179 PKSTKILIPFVEEIVPVVDLEQGRIEIVPPPGLLD 213
>gi|33241213|ref|NP_876155.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|48474803|sp|Q7V9R4.1|RIMM_PROMA RecName: Full=Ribosome maturation factor RimM
gi|33238743|gb|AAQ00808.1| RimM protein, required for 16S rRNA processing [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 176
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL G++ + PS+DFPE RF G RWL+ E ++++L GR+ P
Sbjct: 7 WLTIGKIVAPQGLSGKVRINPSSDFPE-RFIKSGDRWLQYD---NEEPQKIQLNSGRQIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ F+GID E+A+ LVG LL RP L GEF+ DL+G++V +K +
Sbjct: 63 GKSIYVVEFQGIDDREKAKALVGKKLLIDSSHRPTLAPGEFHLLDLLGLKVRLKNDHREI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V N+ ++G NDLL V SG+ V +PFV+EIVP + +
Sbjct: 123 GEVTNLTSAG-NDLLEVRLL-------------------SGKKVLVPFVKEIVPEIKLQE 162
Query: 257 REMQITPPKGLLEL 270
+ + PP GL +L
Sbjct: 163 GWLMVCPPPGLFDL 176
>gi|33862161|ref|NP_893722.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|48474356|sp|Q7UZQ3.1|RIMM_PROMP RecName: Full=Ribosome maturation factor RimM
gi|33634379|emb|CAE20064.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 179
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S G+ G+I +K +DF E RFT PG RW+++ G ET E +L G +
Sbjct: 6 EWLIVGLITSPQGINGKIKIKSLSDFEE-RFTKPGKRWIQK---GNETPIEFELTHGFKK 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++S+I+TF+GI+ QA L G +L + P+L GE++ +L+ + V + E +L
Sbjct: 62 PGKESFIITFKGINNRTQAENLKGQKILVKVDAIPKLSHGEYHLTELINLNVKISENNQL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N L+ + +++ ++E V IPFV+EIVPIVD
Sbjct: 122 HIIGKVINLSNEKNNLLV-------IQLLKNNKE------------VLIPFVKEIVPIVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + +TPP GLLEL
Sbjct: 163 IKKNFILLTPPSGLLEL 179
>gi|300811726|ref|ZP_07092200.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497302|gb|EFK32350.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 167
Score = 117 bits (294), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 113/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF T G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRT-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA+ L G+ +L E D+ EL DG +Y RDL+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAKKLKGTEILISEEDQGELPDGVYYYRDLLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDEDGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>gi|427703411|ref|YP_007046633.1| 16S rRNA processing protein RimM [Cyanobium gracile PCC 6307]
gi|427346579|gb|AFY29292.1| 16S rRNA processing protein RimM [Cyanobium gracile PCC 6307]
Length = 197
Score = 117 bits (294), Expect = 1e-23, Method: Composition-based stats.
Identities = 82/214 (38%), Positives = 114/214 (53%), Gaps = 29/214 (13%)
Query: 63 ATQEIVETSASGL-----DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ 117
+ Q + +TS G + + VG V + G+ G++ + P +DFPE RFT PG RWL Q
Sbjct: 7 SDQAVADTSDEGPGADPGELMAVGKVVAAQGMGGDVRLLPLSDFPE-RFTQPGPRWL--Q 63
Query: 118 VLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEF 177
G R V+L+ GR PG+ ++L EGI A LVG LL DRP L GEF
Sbjct: 64 APGGAP-RPVRLLAGRPVPGKTLFVLRLEGIGDRNAAEALVGQHLLVSAADRPTLGPGEF 122
Query: 178 YTRDLVGMRV-VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
+ DLVG++V ++ + +GTV ++ + G NDLL V SD
Sbjct: 123 HLLDLVGLQVRLLPDPQAPIGTVTDLIH-GGNDLLEV-----------------ELSDG- 163
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
GR + IPFVE IVP V++ + +TPP GLL+L
Sbjct: 164 GRRLLIPFVEAIVPEVNLAEGWIGLTPPPGLLDL 197
>gi|443311814|ref|ZP_21041438.1| 16S rRNA processing protein RimM [Synechocystis sp. PCC 7509]
gi|442778214|gb|ELR88483.1| 16S rRNA processing protein RimM [Synechocystis sp. PCC 7509]
Length = 210
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 19/196 (9%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL-RQQVLGRETIREVKLIDGREH 135
++ +G + + GLQGE+ V P +DFPE RF PGTRWL R Q E + ++L+ GR
Sbjct: 33 WLQIGKIVAAQGLQGELRVYPDSDFPE-RFVIPGTRWLLRSQ---EEEPQPIELLHGRYI 88
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ + ++ GI T +Q+ L G LL E DRP+L + E++ DL+G+ V + T +
Sbjct: 89 EGKGLYAISLAGITTRDQSEDLRGCLLLVPESDRPKLGEDEYHVLDLIGLEVFNQLTQVV 148
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG VV+V +G NDLL V + V+ + + IPFV+ I P+VD+
Sbjct: 149 VGKVVDVIAAG-NDLLEVQPVAEVD-------------KPPAKNILIPFVKAIAPVVDLA 194
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP GLLELN
Sbjct: 195 NKRIEIIPPSGLLELN 210
>gi|172036717|ref|YP_001803218.1| 16S rRNA-processing protein RimM [Cyanothece sp. ATCC 51142]
gi|354554531|ref|ZP_08973835.1| 16S rRNA processing protein RimM [Cyanothece sp. ATCC 51472]
gi|209573575|sp|B1WZK0.1|RIMM_CYAA5 RecName: Full=Ribosome maturation factor RimM
gi|171698171|gb|ACB51152.1| rRNA processing protein [Cyanothece sp. ATCC 51142]
gi|353553340|gb|EHC22732.1| 16S rRNA processing protein RimM [Cyanothece sp. ATCC 51472]
Length = 191
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 13/194 (6%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + S GL+GE+ V STDFPE RF PG RWL Q + ++LI G+
Sbjct: 8 WLEIGTIVSARGLKGELKVLSSTDFPE-RFEIPGKRWL--QPPHDPYPQAIELISGKSVA 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I+ EGI+ QA L G LL + + PELE+ E++ L+ ++V +TGEL+
Sbjct: 65 GKNIYIVRLEGIENRNQAETLRGYKLLIMDQELPELEEEEYHVSQLINVQVYHHKTGELL 124
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV+++F +G +DLL + +I SE + + R V IPFV EIVP+VD+
Sbjct: 125 GTVIDLFTTG-HDLL------EIQLINNSEREAKKTKE---RKVLIPFVYEIVPVVDLEN 174
Query: 257 REMQITPPKGLLEL 270
++I PPKGLL L
Sbjct: 175 NRIEINPPKGLLSL 188
>gi|443321995|ref|ZP_21051031.1| 16S rRNA processing protein RimM [Gloeocapsa sp. PCC 73106]
gi|442788295|gb|ELR97992.1| 16S rRNA processing protein RimM [Gloeocapsa sp. PCC 73106]
Length = 180
Score = 117 bits (292), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/200 (34%), Positives = 109/200 (54%), Gaps = 23/200 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++++G + + GL+G++ V P+TDFP+ RF PG RWL++Q T V+L+ G +
Sbjct: 4 DWLEIGDIVAPQGLKGQLRVNPTTDFPD-RFEKPGQRWLQRQ--PDTTPEPVQLLSGYQI 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ + + A L G LL + DRP+L E++ DL+ + V + TG
Sbjct: 61 PGRSIYVIKLAEVTDILHAEALRGCKLLVAKSDRPQLPPDEYHVSDLINLPVYHQVTGVK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+ S NDLL V V+ IPFV+EIVP+VD+
Sbjct: 121 IG-VITAITSVGNDLLEVKTGEKTKVL-------------------IPFVKEIVPLVDLT 160
Query: 256 GREMQITPPKGLLELNLRTD 275
+ ++I PP GLLELN +++
Sbjct: 161 RQRVEINPPIGLLELNDQSN 180
>gi|428223368|ref|YP_007107538.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7502]
gi|427996708|gb|AFY75403.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 7502]
Length = 178
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ +G + S GL+GE+ V +DFPE RF G RW+ + T ++LI GR+
Sbjct: 3 EWIVIGKIVSTQGLKGEVRVLSYSDFPE-RFEKAGKRWISKSETA--TPEPIELIHGRDV 59
Query: 136 PGQKS-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ S +++ GIDT + A L G+ L+ ++ DRP+L E++ DL+G +V+ + TG+
Sbjct: 60 PGKISLYVVKLGGIDTCDAAEALRGNLLMVQDSDRPKLAKNEYHVTDLIGCKVIHQPTGK 119
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V++V G NDLL V + V+ IPFVE I P+V++
Sbjct: 120 YLGIVIDVL-PGGNDLLEVQNDNQEKVL-------------------IPFVEAIAPVVNI 159
Query: 255 NGREMQITPPKGLLE 269
+ ++ITPP GL++
Sbjct: 160 REKYIEITPPNGLVD 174
>gi|428777287|ref|YP_007169074.1| 16S rRNA processing protein RimM [Halothece sp. PCC 7418]
gi|428691566|gb|AFZ44860.1| 16S rRNA processing protein RimM [Halothece sp. PCC 7418]
Length = 190
Score = 114 bits (286), Expect = 1e-22, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 10/195 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +++G + S HG++GE+ V +DFPE RF PG R L++ + + V + G
Sbjct: 6 DLIEIGTIVSAHGIKGEVKVYTDSDFPE-RFEKPGKRLLQRP--NQTKLDWVTIKRGYYL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+K +++ FE I QA L S L + DRP+LE+ E++ DL+G+ V+ +ET
Sbjct: 63 PGKKLYVVRFEEITDRNQAEELKKSKLFVEKRDRPQLEENEYHVDDLIGLAVIDQETRGK 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G +V+++ +G NDLL V + +++ + V IPFV +IVP+VD+
Sbjct: 123 IGQIVDIYPAG-NDLLVVDLETEFLAQHFPDKSPEKSQ------VLIPFVTDIVPVVDLP 175
Query: 256 GREMQITPPKGLLEL 270
E+++T P GLL L
Sbjct: 176 EGELEVTLPPGLLAL 190
>gi|427713252|ref|YP_007061876.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 6312]
gi|427377381|gb|AFY61333.1| 16S rRNA processing protein RimM [Synechococcus sp. PCC 6312]
Length = 185
Score = 113 bits (282), Expect = 3e-22, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G + + GL G + V P +DFPE RF PG RWL+ + + V L +GR
Sbjct: 11 DWIVIGQIVAPQGLAGAVRVYPESDFPE-RFLEPGPRWLKTN--HQNSPIPVTLTEGRFL 67
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G ++LTF T +A L GS L+ DRP LE EF+ DL+G+ V + E+
Sbjct: 68 NGPGLYVLTFAEYKTRTEAENLRGSQLVVPMSDRPPLEPNEFHLMDLIGLDVFIPPDPEV 127
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV+ + N+G NDLL V + I V IP V EIVP +D+
Sbjct: 128 IGTVIGLINAG-NDLLEVRLHRPQEPI-----------------VLIPLVREIVPTIDLQ 169
Query: 256 GREMQITPPKGLL 268
R +++TPP GL+
Sbjct: 170 HRRIELTPPTGLI 182
>gi|104774247|ref|YP_619227.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514337|ref|YP_813243.1| 16S rRNA-processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|385815996|ref|YP_005852387.1| 16S rRNA processing protein rimM [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|418028859|ref|ZP_12667408.1| hypothetical protein LDBUL1632_00202 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|122274931|sp|Q049R7.1|RIMM_LACDB RecName: Full=Ribosome maturation factor RimM
gi|122397101|sp|Q1G9L3.1|RIMM_LACDA RecName: Full=Ribosome maturation factor RimM
gi|103423328|emb|CAI98171.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093652|gb|ABJ58805.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325126033|gb|ADY85363.1| Probable 16S rRNA processing protein rimM [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|354691196|gb|EHE91134.1| hypothetical protein LDBUL1632_00202 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 167
Score = 113 bits (282), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDKNGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>gi|422843984|ref|ZP_16890694.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685918|gb|EGD27983.1| 16S rRNA processing protein RimM [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 167
Score = 113 bits (282), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDENGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>gi|37521074|ref|NP_924451.1| 16S rRNA-processing protein RimM [Gloeobacter violaceus PCC 7421]
gi|46577644|sp|Q7NKH3.1|RIMM_GLOVI RecName: Full=Ribosome maturation factor RimM
gi|35212070|dbj|BAC89446.1| gll1505 [Gloeobacter violaceus PCC 7421]
Length = 181
Score = 112 bits (281), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 28/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR--ETIREVKLIDGRE 134
++++G V + GL+GE+ V+P+TDF E R T PG R ++GR + R +L GR
Sbjct: 4 WLEIGKVVAAQGLRGEVRVQPATDFAE-RLTRPGAR-----LVGRSLDDGRVFRLQSGRA 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ ++ FEG++ A LVGSTL +RP L GEF+ DL+G+RV ++TGE
Sbjct: 58 IPGKDLFVCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGE 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V ++ +G NDLL + + G+ V +PFV +VP+VD+
Sbjct: 118 AIGEVSDMTRAG-NDLLVIRL-------------------SGGKTVMVPFVHALVPVVDL 157
Query: 255 NGREMQITPPKGLLE 269
+++ GLL+
Sbjct: 158 EAGRIEVVAIPGLLD 172
>gi|313124063|ref|YP_004034322.1| ribosome maturation factor rimm [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280626|gb|ADQ61345.1| Ribosome maturation factor rimM [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 167
Score = 112 bits (281), Expect = 4e-22, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFTEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDENGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>gi|123969347|ref|YP_001010205.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
AS9601]
gi|166226465|sp|A2BTI7.1|RIMM_PROMS RecName: Full=Ribosome maturation factor RimM
gi|123199457|gb|ABM71098.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. AS9601]
Length = 179
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG++ S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G +
Sbjct: 6 EWLIVGFITSCHGINGQLKVKSLSDFEE-RFLKPGMRWLQKE---SEHPSKIELISGFKQ 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++ +I+ F+GI+T A L LL + P+L+ EF+ +L+ + V E EL
Sbjct: 62 PGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDEL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N+LL + + + + V IPFV+EIVP+VD
Sbjct: 122 KIIGKVINLENE-KNNLLIIELFK------------------NQKKVLIPFVKEIVPLVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 IKNNFLIINPPNGLLEL 179
>gi|418035096|ref|ZP_12673555.1| hypothetical protein LDBUL1519_00255 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354691034|gb|EHE90974.1| hypothetical protein LDBUL1519_00255 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 167
Score = 112 bits (279), Expect = 7e-22, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 111/193 (57%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG + REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDG-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDENGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>gi|145347214|ref|XP_001418069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578297|gb|ABO96362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 27/229 (11%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGR--E 134
+ VG + H L+GE+ VKP TDF E R G+ G +R VK+ GR
Sbjct: 10 LIQVGAIVGAHSLRGEVRVKPMTDFIEERLMRTGSTLRFDAPPGE--VRAVKVRSGRWVT 67
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE----------DGEFYTRDLVG 184
G+ I+ G D A LVG+ L DR L D EFY ++L G
Sbjct: 68 SKGRNDVIVKLAGCDDRNAAEALVGTRLFVLPSDREPLRKDEGAEGSDGDDEFYAQELEG 127
Query: 185 MRVVMKETGELVGTVVNVF-NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
+RVV ++TGE++G V +V +G DLL V I EE A V++P
Sbjct: 128 LRVVERDTGEVIGVVEDVVRGAGTQDLLKVA------FIALDEETGIDAE----YYVYVP 177
Query: 244 FVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKK 292
FV+EIVP+VD M+ITPP GLL+L + +++KK+R ++ K+++K
Sbjct: 178 FVKEIVPLVDATNGFMEITPPGGLLDLKI--PKKTKKQRARVAAKQKEK 224
>gi|124026761|ref|YP_001015876.1| 16S rRNA-processing protein [Prochlorococcus marinus str. NATL1A]
gi|166226463|sp|A2C552.1|RIMM_PROM1 RecName: Full=Ribosome maturation factor RimM
gi|123961829|gb|ABM76612.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. NATL1A]
Length = 176
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL+G++ +KPS+DFPE RFT PG RW+++ E E+KL G+ P
Sbjct: 7 WMSIGEIVAPQGLRGDLRIKPSSDFPE-RFTKPGKRWIQKT---DELPTEIKLTKGKLIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++L+ EG+ T A ++G L+ RP L E++ DL+G+ + L+
Sbjct: 63 GKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ G NDLL + G+ V +PFV+EIVP +++
Sbjct: 123 GYVTDLIK-GGNDLLEIEL-------------------VEGKKVLVPFVKEIVPEIEIKE 162
Query: 257 REMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 KWLLINPPPGLLEL 176
>gi|72383019|ref|YP_292374.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str.
NATL2A]
gi|109893031|sp|Q46IK7.1|RIMM_PROMT RecName: Full=Ribosome maturation factor RimM
gi|72002869|gb|AAZ58671.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str.
NATL2A]
Length = 176
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL+G++ +KPS+DFPE RFT PG RW+++ E E+KL G+ P
Sbjct: 7 WMTIGEIVAPQGLRGDLRIKPSSDFPE-RFTKPGKRWIQKT---DELPTEIKLTKGKLIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++L+ EG+ T A ++G L+ RP L E++ DL+G+ + L+
Sbjct: 63 GKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARRGPSKALI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ G NDLL + G+ V +PFV+EIVP +++
Sbjct: 123 GYVTDLIK-GGNDLLEIEL-------------------VEGKKVLVPFVKEIVPEIEIKE 162
Query: 257 REMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 KWLLINPPPGLLEL 176
>gi|123967026|ref|YP_001012107.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9515]
gi|166226464|sp|A2BYY9.1|RIMM_PROM5 RecName: Full=Ribosome maturation factor RimM
gi|123201392|gb|ABM73000.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9515]
Length = 179
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S G+ G+I VK +DF E RFT PG RW++++ E+ ++++LI G +
Sbjct: 6 EWLIVGLITSPQGINGKIKVKSLSDFEE-RFTKPGIRWIQKET---ESPKKLQLISGFQK 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++S+++TF+ I +A L G LL + + P+L EF+ +L+ ++V + E +L
Sbjct: 62 PGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNKL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G VVN+ N N+LL + + + + V +PFV+EI+P +D
Sbjct: 122 KIIGKVVNLENE-KNNLLVIKLLT------------------NDKEVLVPFVKEIIPEID 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + + ITPP GLLEL
Sbjct: 163 IKNKFLIITPPPGLLEL 179
>gi|126697136|ref|YP_001092022.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9301]
gi|166226462|sp|A3PF96.1|RIMM_PROM0 RecName: Full=Ribosome maturation factor RimM
gi|126544179|gb|ABO18421.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9301]
Length = 179
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G +
Sbjct: 6 EWLTVGLITSCHGINGQVKVKSLSDFEE-RFLKPGMRWLQKE---NEPPSKIELISGFKQ 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++++I+ +GI+T A L +L R P+L+ EF+ +L+ + V E EL
Sbjct: 62 PGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDEL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N+LL + + + + V IPFV+EIVP+VD
Sbjct: 122 KTIGKVINLENE-KNNLLIIELFK------------------NQKKVLIPFVKEIVPLVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + + I PP GLLEL
Sbjct: 163 IKNQFVIINPPNGLLEL 179
>gi|67924212|ref|ZP_00517652.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
gi|416402440|ref|ZP_11687389.1| 16S rRNA processing protein RimM [Crocosphaera watsonii WH 0003]
gi|67853931|gb|EAM49250.1| RimM protein:PRC-barrel [Crocosphaera watsonii WH 8501]
gi|357261901|gb|EHJ11116.1| 16S rRNA processing protein RimM [Crocosphaera watsonii WH 0003]
Length = 190
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 13/194 (6%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + GL+GE+ V STDFPE RF PG RWL+ ++ ++LI G+
Sbjct: 8 WLEIGTIVAPKGLRGELKVLSSTDFPE-RFKNPGKRWLKSP--QNASLEPIELISGKPVA 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I+ +GI+ QA L G LL + P+L + E++ L+ + V + TG+++
Sbjct: 65 GKNIYIVRLQGIENRNQAENLRGHKLLILDETPPKLSEEEYHVSQLIDLDVYDQNTGKMI 124
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV++F++G +DLL + + + + + V++PFV EIVP+VD+
Sbjct: 125 GNVVDIFSAG-HDLLEIKLIT---------DTETEVKHKKEKKVFVPFVYEIVPVVDLEQ 174
Query: 257 REMQITPPKGLLEL 270
+++I PP GLL+L
Sbjct: 175 HKIEINPPIGLLDL 188
>gi|443475229|ref|ZP_21065185.1| Ribosome maturation factor rimM [Pseudanabaena biceps PCC 7429]
gi|443019948|gb|ELS33968.1| Ribosome maturation factor rimM [Pseudanabaena biceps PCC 7429]
Length = 182
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 23/195 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G + S GL+GE+ + +DFPE RF G RW+ ++ +E+ ++ GRE
Sbjct: 4 DWLIIGKIVSPQGLKGEVRILSYSDFPE-RFENAGKRWIAAS--EKDEPQEIMMLAGREV 60
Query: 136 PGQKS-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
G+K+ +++ EGI+ ++A L ++ DRP LE E+ DLVG +V + TG+
Sbjct: 61 AGKKNLFVVRLEGINDCDRAEALRNYVMMIPTSDRPYLEHNEYMIADLVGCQVYHQATGK 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V+++ +G NDLL V + V IPFVE I P VD+
Sbjct: 121 LLGEVISIIAAG-NDLLEVRNLDNQEV------------------ELIPFVEAIAPFVDI 161
Query: 255 NGREMQITPPKGLLE 269
+ + +++TPPKGL++
Sbjct: 162 HQKRIEVTPPKGLID 176
>gi|284928664|ref|YP_003421186.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
gi|284809123|gb|ADB94828.1| 16S rRNA processing protein RimM [cyanobacterium UCYN-A]
Length = 195
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 15/197 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ + +G + GL+GE+ V STDFPE RF W+ + T++ VKLI R
Sbjct: 12 NMLKIGTIVGPRGLKGELKVLSSTDFPE-RFEISEEHWISDP--NKSTLQSVKLISSRYV 68
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +I+ +GI+T QA L L PEL+ E++ L+ + V ++T +L
Sbjct: 69 MEKNIYIVRLQGIETRNQAELLRNYKLFISNHSIPELKKDEYHISQLINLEVYHQKTKKL 128
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +VF +G +DLL + E S SD + + +PFV EIVPIVD+
Sbjct: 129 IGIVTDVFTTG-HDLLEIEL----------ENPSLPESDKKQKFL-VPFVYEIVPIVDLV 176
Query: 256 GREMQITPPKGLLELNL 272
R +++ PPKGLL+L++
Sbjct: 177 NRRIELNPPKGLLDLSI 193
>gi|126656123|ref|ZP_01727507.1| 16S rRNA-processing protein [Cyanothece sp. CCY0110]
gi|126622403|gb|EAZ93109.1| 16S rRNA-processing protein [Cyanothece sp. CCY0110]
Length = 190
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 111/194 (57%), Gaps = 13/194 (6%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + GL+GE+ V STDFPE RF PG RWL Q + + +KLI G+
Sbjct: 8 WLEIGTIVGARGLKGELKVLSSTDFPE-RFEIPGERWL--QSPNHPSPQPIKLISGKSVA 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I+ EGI+T QA L G LL + + PELE+ E++ L+ + V +TGE +
Sbjct: 65 GKNLYIVRLEGIETRNQAEILRGYKLLIIDQELPELEEEEYHVSQLIDLEVYHHKTGEKI 124
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV++F +G +DLL + ++ + + + V IPFV EIVP+VD+
Sbjct: 125 GIVVDLFTTG-HDLLEIKLINN---------SEKKDKENKDKTVLIPFVYEIVPVVDIEQ 174
Query: 257 REMQITPPKGLLEL 270
++I PPKGLL L
Sbjct: 175 NRIEINPPKGLLTL 188
>gi|308804335|ref|XP_003079480.1| COG0806: RimM protein, required for 16S rRNA processing (ISS)
[Ostreococcus tauri]
gi|116057935|emb|CAL54138.1| COG0806: RimM protein, required for 16S rRNA processing (ISS)
[Ostreococcus tauri]
Length = 280
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 111/235 (47%), Gaps = 37/235 (15%)
Query: 61 SSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPG-TRWLRQQVL 119
S+ + VE + GL V VG + HGL+GE+ V P TDF + RF T G T
Sbjct: 35 STTPRASVEDAGDGL--VQVGAIVGAHGLRGEVRVLPMTDFIDERFMTRGSTLQAETSAQ 92
Query: 120 GRETI-----------REVKLIDGR--EHPGQKSWILTFEGIDTVEQARPLVGSTLLARE 166
GR + REV + GR G+ I+ G+D A LVG+ L
Sbjct: 93 GRSKVSGEYDAPIGETREVSVRGGRWVTSKGRNDVIVKLSGVDDRTSAEALVGTRLFVSP 152
Query: 167 GDRPELE----------DGEFYTRDLVGMRVVMKETGELVGTVVNVF-NSGANDLLHVMC 215
DR L D EFY ++L GMRV+ +E+G VG V +V +G DLL V
Sbjct: 153 SDRAPLRDEAGQTSGDGDDEFYAQELQGMRVIDRESGSEVGVVEDVVRGAGTQDLLKVGF 212
Query: 216 YSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
+ E E V++PFV++IVP+VD R M+ITPP GLL+L
Sbjct: 213 SAFDEEFEIDTEF----------YVYVPFVKDIVPLVDAKNRLMEITPPGGLLDL 257
>gi|307105876|gb|EFN54123.1| hypothetical protein CHLNCDRAFT_25138 [Chlorella variabilis]
Length = 225
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 34/207 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR---WLRQQVLGRETIREVKLIDG 132
++V+VG + HG++GE+ V+ TDFPE R T G R WL Q+ +
Sbjct: 10 EWVEVGRIGPPHGVRGEMKVQALTDFPEDRLATAGPRCACWLAQRSPSPWAL-------- 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKE 191
+ W++ +++ E+A L G TLL R LED EFY +DLVG+RV ++
Sbjct: 62 ------QVWLVKLAEVESPEEAALLRGHTLLIPASARQSLEDEDEFYVQDLVGLRVFLQA 115
Query: 192 TGELVGTVVNVFN-SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
TGE VG V +VF+ +G +D V R V +PF + +VP
Sbjct: 116 TGEEVGLVSDVFDGTGTHDAAEAEAEGGAAVP---------------RHVLLPFAKAMVP 160
Query: 251 IVDMNGREMQITPPKGLLELNLRTDER 277
+VD+ R M++TPP+GLLEL +++R
Sbjct: 161 VVDLAARRMEVTPPEGLLELVAPSNQR 187
>gi|78780083|ref|YP_398195.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9312]
gi|123553678|sp|Q318D6.1|RIMM_PROM9 RecName: Full=Ribosome maturation factor RimM
gi|78713582|gb|ABB50759.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9312]
Length = 179
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 25/193 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++L G + PG++
Sbjct: 10 VGLITSCHGINGQLKVKSLSDFEE-RFLKPGIRWLQKE---NEPPSKIELTSGFKQPGKE 65
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL--VG 197
++I+ +GI+ QA L +L + P+L+ EF+ +L+ + V E EL +G
Sbjct: 66 TFIIKLQGINNRNQAERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEELKIIG 125
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V+N+ N N+LL V + + + V IPFV+EIVP+VD+
Sbjct: 126 KVINLENE-KNNLLVVELFK------------------NKKKVLIPFVKEIVPLVDIKNN 166
Query: 258 EMQITPPKGLLEL 270
+ I PP GLL+L
Sbjct: 167 FLIINPPNGLLDL 179
>gi|157414212|ref|YP_001485078.1| 16S rRNA-processing protein RimM [Prochlorococcus marinus str. MIT
9215]
gi|166985968|sp|A8G7B1.1|RIMM_PROM2 RecName: Full=Ribosome maturation factor RimM
gi|157388787|gb|ABV51492.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus
str. MIT 9215]
Length = 179
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 25/196 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G + P
Sbjct: 7 WLTVGLITSCHGINGQVKVKSLSDFEE-RFLKPGMRWLQKE---DEPPSKIELISGFKQP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
G++++++ + I++ A L +L + + P+L+ EF+ +L+ ++V E +L
Sbjct: 63 GKQTFVIKLKDINSRNHAEQLKKFKILVKTNEIPKLKKEEFHLLELINLKVNTLENDKLN 122
Query: 196 -VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V+N+ N N+LL + + + + V+IPFV+EIVPIVD+
Sbjct: 123 TIGKVINLENE-KNNLLVIKLFKN------------------QKEVFIPFVKEIVPIVDI 163
Query: 255 NGREMQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 164 KNNFIIINPPNGLLEL 179
>gi|194476941|ref|YP_002049120.1| 16S rRNA-processing protein [Paulinella chromatophora]
gi|171191948|gb|ACB42910.1| 16S rRNA-processing protein [Paulinella chromatophora]
Length = 184
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 17/194 (8%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + G+ GE+ + PS+DFPE RFT PG RWL Q + T V L GR P
Sbjct: 8 WLAIGRIVAPQGVAGEMRINPSSDFPE-RFTRPGKRWL-QNINSEPT--PVFLKSGRRLP 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ + I+ + + LVG LL DRP+L GEF+ DL+ + V ++ + +
Sbjct: 64 GKSLYVIRLQDINDRDSVQTLVGQDLLVPFEDRPKLAKGEFHLLDLLNLEVKLEPEFKTI 123
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V N+ +SG NDLL V ++ N A+ R V IP V+ IV ++++
Sbjct: 124 GYVTNLISSG-NDLLEVELITNRN-----------ANKKKSR-VLIPLVKSIVTKIELDQ 170
Query: 257 REMQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 171 GWLSIIPPPGLLEL 184
>gi|254526422|ref|ZP_05138474.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9202]
gi|221537846|gb|EEE40299.1| 16S rRNA processing protein RimM [Prochlorococcus marinus str. MIT
9202]
Length = 179
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 109/196 (55%), Gaps = 25/196 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G + P
Sbjct: 7 WLTVGLITSCHGINGQVKVKSLSDFEE-RFLKPGIRWLQKE---DEPPSKIELISGFKQP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
G++++++ + I++ A L +L + + P+L+ EF+ +L+ ++V E +L
Sbjct: 63 GKETFVIKLKDINSRNHAEQLKKFKILVKTNELPKLKKEEFHLLELINLKVNTLENDKLN 122
Query: 196 -VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V+N+ N N+LL + + + + V+IPFV+EIVPIVD+
Sbjct: 123 TIGKVINLENE-KNNLLVIKLFKN------------------QKEVFIPFVKEIVPIVDI 163
Query: 255 NGREMQITPPKGLLEL 270
+ I PP GLL+L
Sbjct: 164 KNNFIIINPPNGLLDL 179
>gi|16330702|ref|NP_441430.1| 16S rRNA-processing protein RimM [Synechocystis sp. PCC 6803]
gi|383322444|ref|YP_005383297.1| hypothetical protein SYNGTI_1535 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325613|ref|YP_005386466.1| hypothetical protein SYNPCCP_1534 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491497|ref|YP_005409173.1| hypothetical protein SYNPCCN_1534 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436764|ref|YP_005651488.1| hypothetical protein SYNGTS_1535 [Synechocystis sp. PCC 6803]
gi|451814860|ref|YP_007451312.1| hypothetical protein MYO_115480 [Synechocystis sp. PCC 6803]
gi|3914654|sp|P74035.1|RIMM_SYNY3 RecName: Full=Ribosome maturation factor RimM
gi|1653194|dbj|BAA18110.1| slr0808 [Synechocystis sp. PCC 6803]
gi|339273796|dbj|BAK50283.1| hypothetical protein SYNGTS_1535 [Synechocystis sp. PCC 6803]
gi|359271763|dbj|BAL29282.1| hypothetical protein SYNGTI_1535 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274933|dbj|BAL32451.1| hypothetical protein SYNPCCN_1534 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278103|dbj|BAL35620.1| hypothetical protein SYNPCCP_1534 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958621|dbj|BAM51861.1| 16S rRNA-processing protein RimM [Synechocystis sp. PCC 6803]
gi|451780829|gb|AGF51798.1| hypothetical protein MYO_115480 [Synechocystis sp. PCC 6803]
Length = 185
Score = 102 bits (253), Expect = 9e-19, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + G+QGE+ V ++DFP RF T G RW+R+ +ET + + L G++
Sbjct: 13 NWLEIGTIVAAQGIQGEVRVLSASDFPA-RFLTKGQRWIRKT--PQETPQPLTLKKGKQI 69
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +IL F I QA LV LL DR LE GEF+ DL+G+ V + G+
Sbjct: 70 PGKNLYILRFTEITDRNQAEALVNYQLLVPATDRLPLEPGEFHVTDLLGLIVYDHDNGDR 129
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +++G NDLL + + + V +PFVE IVP V++
Sbjct: 130 LGIVTDFYSAG-NDLLGI-----------------TLDKNPDKEVLVPFVEAIVPTVELA 171
Query: 256 GREMQITPPKGLLE 269
+ ++I GLL+
Sbjct: 172 EQRLEIKTIPGLLD 185
>gi|408410981|ref|ZP_11182170.1| Ribosome maturation factor rimM [Lactobacillus sp. 66c]
gi|407874858|emb|CCK83976.1| Ribosome maturation factor rimM [Lactobacillus sp. 66c]
Length = 169
Score = 101 bits (252), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG +EV + GR
Sbjct: 3 MNYYNVGKIVATHGLKGEVKVAITTDFPEDRFAE-GSRLY----LGPNR-QEVTVKAGR- 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I +++A + G L+ E D+ EL DG +Y RDL+G VV E GE
Sbjct: 56 -PFKQFWLVTFNEIPGIDEAEKVKGQELVVSEEDQGELPDGVYYYRDLLGCTVVDDEKGE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ + ++ +G+ WIP++ ++V VD+
Sbjct: 115 KIGELTDIEAPGANDIWEI-------------------TEGNGKKFWIPYIPDVVKSVDI 155
Query: 255 NGREMQITPPKGL 267
+ +++ +GL
Sbjct: 156 EQKVVRVQLMEGL 168
>gi|409349330|ref|ZP_11232822.1| Ribosome maturation factor rimM [Lactobacillus equicursoris CIP
110162]
gi|407878267|emb|CCK84880.1| Ribosome maturation factor rimM [Lactobacillus equicursoris CIP
110162]
Length = 169
Score = 100 bits (250), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG +EV + GR
Sbjct: 3 MNYYNVGKIVATHGLKGEVKVAITTDFPEDRFAE-GSRLY----LGPNR-QEVTVKAGR- 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I +++A + G L+ E D+ EL DG +Y RDL+G VV E GE
Sbjct: 56 -PFKQFWLVTFNEIPGIDEAEKVKGQELVVSEEDQGELPDGVYYYRDLLGCTVVDDEKGE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ + ++ +G+ WIP++ ++V VD+
Sbjct: 115 KIGELTDIEAPGANDIWEI-------------------TEENGKKFWIPYIPDVVKSVDI 155
Query: 255 NGREMQITPPKGL 267
+ +++ +GL
Sbjct: 156 EQKVVRVQLMEGL 168
>gi|269793023|ref|YP_003317927.1| 16S rRNA processing protein RimM [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100658|gb|ACZ19645.1| 16S rRNA processing protein RimM [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 181
Score = 100 bits (249), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR-QQVLGRE-TIREVKLIDGREH 135
V VG + HG++G + +KP TD+PE RF T +L QV GR RE+K++D R
Sbjct: 8 VTVGCIVGTHGIKGSLKLKPLTDYPE-RFLHMETLYLELPQVKGRHRPPRELKILDVRFQ 66
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +I+T EGIDT+E A L G+ + DR LE+G ++ D++G+ VV ET +
Sbjct: 67 DGKDLFIVTLEGIDTIEMAEDLKGALITVAPEDRVPLEEGVYWIDDIIGLEVVEDETDAV 126
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V +G+ND+ V G L IP E++ VD+
Sbjct: 127 LGVVEDVMPTGSNDVYEV-------------------RTPDGVLKMIPATGEVIRKVDLE 167
Query: 256 GREMQITPPKGL 267
R++++ +GL
Sbjct: 168 ARQIRVHLLEGL 179
>gi|256851289|ref|ZP_05556678.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260660713|ref|ZP_05861628.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|297206157|ref|ZP_06923552.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
gi|256616351|gb|EEU21539.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 27-2-CHN]
gi|260548435|gb|EEX24410.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 115-3-CHN]
gi|297149283|gb|EFH29581.1| 16S rRNA processing protein RimM [Lactobacillus jensenii JV-V16]
Length = 170
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F DV V + HGL+GE+ VK TDFPE RF G + + ++ +R++ + GR
Sbjct: 1 MQFYDVAQVLTSHGLKGEVKVKVITDFPEQRFCE-GVK-----LFIKDDMRQLTVESGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF+ I + +A L G TL+ E D+ +L +G +Y ++G+ VV ET E
Sbjct: 54 -PFKQFWLVTFKEIKDINEAESLFGKTLVISEEDQEQLPEGHYYYHQIIGLSVVDNETDE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V ++ GAND+ V + G+ W+P+V V V++
Sbjct: 113 LIGKVTDIEAPGANDIWQV-------------------TPKVGKPFWLPYVPSFVKSVNL 153
Query: 255 NGREMQITPPKGL 267
+ E+++ +GL
Sbjct: 154 DKEEVRVELMEGL 166
>gi|385678500|ref|ZP_10052428.1| 16S rRNA-processing protein RimM [Amycolatopsis sp. ATCC 39116]
Length = 172
Score = 100 bits (248), Expect = 3e-18, Method: Composition-based stats.
Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG++GE++V TD PE RF T R T R + + R H G
Sbjct: 3 VVVGRVAKAHGVRGELAVDIRTDSPEERFRDGATVTAR---FRDGTTRPLTVAAARPHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++TFE + T E A L G+ LLA D P +D EFY +L G+R + + GE++
Sbjct: 60 R--LLVTFEQVVTREAAEALRGALLLADTADLPPSDDPDEFYDHELEGLRAELSD-GEVI 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV V ++ +LL A D GR V +PFV+ IVP+VD+ G
Sbjct: 117 GTVTEVVHAPHGELL--------------------ALDRDGRTVLVPFVQAIVPVVDVKG 156
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 157 GRVVVDPPEGLLD 169
>gi|403514810|ref|YP_006655630.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus R0052]
gi|403080248|gb|AFR21826.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus R0052]
Length = 171
Score = 100 bits (248), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RFT LR +T R + + R
Sbjct: 1 MEYFDVARILTTHGLNGEVKVNVITDFPEERFTEGMHLSLRS-----DTNRTLTVEKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++SW++ F+ I ++QA L G L+ E DR EL DG +Y +D+ V+ +ETG+
Sbjct: 55 -PFKQSWLIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +V++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 114 RIGKIVDIQSPGANDIWLV-------------------HEDDGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 AAKKVYVELMEGL 167
>gi|86607822|ref|YP_476584.1| 16S rRNA-processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|109893060|sp|Q2JPG6.1|RIMM_SYNJB RecName: Full=Ribosome maturation factor RimM
gi|86556364|gb|ABD01321.1| 16S rRNA processing protein RimM [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 179
Score = 99.8 bits (247), Expect = 5e-18, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V + HGL+G + V+ +DFPE RFT PG RWL++ + LI+G+
Sbjct: 7 DWLLVGQVVAAHGLRGWLRVRCWSDFPE-RFTEPGPRWLQRDTDPEPLLH--PLIEGQFF 63
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P + +++ EGI A VG+ LL R L+ E++ RDL+G+ V + GEL
Sbjct: 64 PAKGLYLVRLEGIPNRTVAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQ--GEL 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +G D+L + + + R V IPFV+ +VP+VD+
Sbjct: 122 LGQVSGILAAG-QDVLEI-------------------TTSDHRQVLIPFVKALVPVVDLE 161
Query: 256 GREMQITPPKGLLE 269
+ + PP GL+E
Sbjct: 162 KGALHVQPPPGLVE 175
>gi|238854765|ref|ZP_04645095.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|260663997|ref|ZP_05864850.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
gi|313472282|ref|ZP_07812774.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|238832555|gb|EEQ24862.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 269-3]
gi|239529873|gb|EEQ68874.1| 16S rRNA processing protein RimM [Lactobacillus jensenii 1153]
gi|260561883|gb|EEX27852.1| 16S rRNA processing protein RimM [Lactobacillus jensenii SJ-7A-US]
Length = 170
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F DV V + HGL+GE+ VK TDFPE RF G + + ++ +R++ + GR
Sbjct: 1 MQFYDVAQVLTSHGLKGEVKVKVITDFPEQRFCE-GVK-----LFIKDDMRQLTVESGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF+ I + +A L G TL+ E D+ +L +G +Y ++G+ VV ET E
Sbjct: 54 -PFKQFWLVTFKEIKDINEAESLFGKTLVISEEDQDQLPEGHYYYHQIIGLSVVDNETDE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V ++ GAND+ V + G+ W+P+V V V++
Sbjct: 113 LIGKVTDIEAPGANDIWQV-------------------TPKVGKPFWLPYVSSFVKSVNL 153
Query: 255 NGREMQITPPKGL 267
+ E+++ +GL
Sbjct: 154 DKGEVRVELMEGL 166
>gi|159470193|ref|XP_001693244.1| RimM-like protein [Chlamydomonas reinhardtii]
gi|158277502|gb|EDP03270.1| RimM-like protein [Chlamydomonas reinhardtii]
Length = 181
Score = 99.4 bits (246), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 31/201 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRF---TTPGTR--WLRQQVLGRETIREVKLID 131
+V+VG V HG++GE+ V+PSTD P RF + P R W VL +R +
Sbjct: 5 YVEVGRVTGAHGVRGELRVEPSTDQPAKRFKAGSKPCWRPSWPDVGVLKMRAVRPL---- 60
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMK 190
G+ G+++W++ + + + QA L G L DR L D EFY D++G V+ +
Sbjct: 61 GK---GEEAWLVALDEVGSRTQAEQLRGHLLYVAASDREALRDPDEFYVTDIIGCSVLDQ 117
Query: 191 ETGELVGTVVNVFNS-GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+G LVG VV+VF+ G +D L + ++ R IPF + I
Sbjct: 118 ASGRLVGQVVDVFSGMGTHDTLR-----------------ADIMNSRIRYCMIPFAKAIC 160
Query: 250 PIVDMNGREMQITPPKGLLEL 270
P++D+ R +++ PP+GLL++
Sbjct: 161 PVLDLKSRTLEVAPPEGLLDM 181
>gi|168003465|ref|XP_001754433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694535|gb|EDQ80883.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 501
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 189/444 (42%), Gaps = 84/444 (18%)
Query: 293 FQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKR 352
+ ++ A + +L ++ Q+HV G G+ Q L + + I+ L ++AL ++ + + +
Sbjct: 1 MEHKIAALRSQLADLGQEHVLAGLSSGDSSQRQSLVDQVSSIDLPLFRRALADV-VRTLK 59
Query: 353 WNATEL---------MNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVS 403
N L K E + + SG+ S + + +G LV+
Sbjct: 60 GNKNRLDKQPIPPKPFPQAKWEGLHEWISSSGDTS-------NEKDDTARWWSEGLRLVA 112
Query: 404 EGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLS-DDQRFVKIENRAS---- 458
+G+ A++++ +G P + V++ S+ ++L +R + +E A+
Sbjct: 113 DGEVAVLVLAGG--QGTRLGPGAPVAKGMLELSVPEPKSLFQLQAERLLLVEELAAFVTD 170
Query: 459 ------MP-LVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKF 511
+P LV+ A ++ F + + F + +VWFL++ LP V
Sbjct: 171 DTIKRRIPWLVMTSDATDLAT-RTFFEEKNFFGLEKSQVWFLKQSSLPCVDLD----EGH 225
Query: 512 KILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLG 570
+LM++PW+ AP G+G +FS L + IK L GV+Y+Q+ N + + +F G
Sbjct: 226 AMLMEAPWKVAMAPAGNGALFSDLRTAGFIKKLSSQGVKYVQVYAVDNALVRVADPVFYG 285
Query: 571 FVKSCGADIGFQISE--YAK--------HSE-------ERFNT----------------- 596
F+ A++G ++ +AK H E ER+
Sbjct: 286 FIHRRQAEVGVKVVSKIHAKESVGVVCLHQEGASNLKCERYGVLEYSEMPESLTTAKDNS 345
Query: 597 -------------MLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSY 643
M S++ ++KLT+ ++LEF+ K H+ K + V PA PN
Sbjct: 346 GQLQFRAAHICINMFSVHYLEKLTDLDSQLEFHPAVKRIPHMRKTSGIWETVNPARPNGI 405
Query: 644 ELRSSIYSCLNACSLDKVCVMEIT 667
+L I+ +C +KV ++E++
Sbjct: 406 KLEQFIFDSFQSCDSEKVALLEVS 429
>gi|395238275|ref|ZP_10416212.1| Ribosome maturation factor rimM [Lactobacillus gigeriorum CRBIP
24.85]
gi|394477847|emb|CCI86189.1| Ribosome maturation factor rimM [Lactobacillus gigeriorum CRBIP
24.85]
Length = 171
Score = 97.4 bits (241), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++F DV + + HGL GEI V TDFPE RF L+Q + T++ +
Sbjct: 1 MEFYDVAKILTTHGLNGEIKVSAITDFPEERFEPGVVLHLKQDPTKQLTVKSSR------ 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F+ + ++E+A L G L+ E DR EL +G +Y +D++ +V ET +
Sbjct: 55 -PFKQFWLVQFDEVPSIEEAEKLRGQILVISEADRQELPEGMYYYKDILDCQVKDNETDK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G +V + + GAND+ V + G+ W+P+++++V VD+
Sbjct: 114 LIGKIVEIESPGANDIWLV-------------------RETDGKEFWLPYIDQVVKKVDI 154
Query: 255 NGREMQITPPKGL 267
+ + + +GL
Sbjct: 155 ANKVVYVELMEGL 167
>gi|238852594|ref|ZP_04643004.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
gi|238834740|gb|EEQ26967.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 202-4]
Length = 173
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-RE 134
++ +VG + S HGL+GE+ V +TDFPE R +++ +E I +DG R
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELI-----VDGARR 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ +++ FE ID ++QA + G L E D+ EL +G +Y +D++ V ETGE
Sbjct: 58 H--KQFYLVKFEEIDDIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 116 KLGVLANIETPGANDIWEI-------------------KPERGKSFWIPNIESVVNKVDL 156
Query: 255 NGREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 157 ANKRIEVTLLEGLRDEN 173
>gi|412988814|emb|CCO15405.1| predicted protein [Bathycoccus prasinos]
Length = 348
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 22/244 (9%)
Query: 44 LPSTSPQIYRHAVSLLHSSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE 103
L ++S I + +EI + + + VG V + HGL+GE+ V P TDF E
Sbjct: 99 LGTSSEDIKETMAEEISQKINEEIADARGA---LIQVGAVVAAHGLKGEVRVLPLTDFIE 155
Query: 104 LRFTTPGTRWLRQQVL-GRETIRE-----------VKLIDGR--EHPGQKSWILTFEGID 149
RF PG + V GR + + +++ +GR G+ I+ F+G
Sbjct: 156 ERFMNPGVELYVENVAQGRSSKNDGYDRPIAEGKFMRIANGRWVTSKGRTEPIVKFKGCS 215
Query: 150 TVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKE-TGELVGTVVNVF-NSG 206
A ++G + R E+E+ + FY +DL G+ V+M E E+VG V +++ +G
Sbjct: 216 DRTTAEAMIGRRIYIGAESRAEIEEEDAFYCQDLEGLTVIMHEGEREVVGVVEDIYRGAG 275
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKG 266
DL+ V+ + + + D V+IPFV++IVP+VD++ ++ITPP G
Sbjct: 276 EKDLMKVLMQPEMET--KTNKNGEVEIDVVEYYVYIPFVKDIVPVVDVDQGLIEITPPPG 333
Query: 267 LLEL 270
LL+L
Sbjct: 334 LLDL 337
>gi|116629444|ref|YP_814616.1| 16S rRNA-processing protein RimM [Lactobacillus gasseri ATCC 33323]
gi|282850845|ref|ZP_06260219.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311110908|ref|ZP_07712305.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
gi|420147404|ref|ZP_14654680.1| Ribosome maturation factor RimM [Lactobacillus gasseri CECT 5714]
gi|122273618|sp|Q044E4.1|RIMM_LACGA RecName: Full=Ribosome maturation factor RimM
gi|116095026|gb|ABJ60178.1| 16S rRNA processing protein RimM [Lactobacillus gasseri ATCC 33323]
gi|282557797|gb|EFB63385.1| 16S rRNA processing protein RimM [Lactobacillus gasseri 224-1]
gi|311066062|gb|EFQ46402.1| 16S rRNA processing protein RimM [Lactobacillus gasseri MV-22]
gi|398401405|gb|EJN54907.1| Ribosome maturation factor RimM [Lactobacillus gasseri CECT 5714]
Length = 173
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-RE 134
++ +VG + S HGL+GE+ V +TDFPE R +++ +E I +DG R
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELI-----VDGARR 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ +++ FE ID ++QA + G L E D+ EL +G +Y +D++ V ETGE
Sbjct: 58 H--KQFYLVKFEEIDGIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 116 KLGVLANIETPGANDIWEI-------------------KPEHGKSFWIPNIESVVNKVDL 156
Query: 255 NGREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 157 ANKRIEVTLLEGLRDEN 173
>gi|395242477|ref|ZP_10419474.1| Ribosome maturation factor rimM [Lactobacillus pasteurii CRBIP
24.76]
gi|394480209|emb|CCI85714.1| Ribosome maturation factor rimM [Lactobacillus pasteurii CRBIP
24.76]
Length = 170
Score = 97.1 bits (240), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 31/195 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDG 132
+ F DV + + HGL GE+ V+ TDFPE RF T L+ +QVL T++ +L
Sbjct: 1 MQFYDVAKILTTHGLNGEVKVQVITDFPEDRFETGVKLKLKNSEQVL---TVKAGRLF-- 55
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
++ W++ FE I +++QA L G L+ E D+ EL +G +Y D++G +V+ +E+
Sbjct: 56 -----KQFWLVQFEEITSIDQAEKLRGQILVISEEDQQELPEGFYYYHDILGCQVLDQES 110
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
GE +G +V + GAND+ V + +G+ W+P+++++V V
Sbjct: 111 GEKIGKIVEIETPGANDIWLV-------------------KEDNGKEFWLPYIDQVVKKV 151
Query: 253 DMNGREMQITPPKGL 267
D+ +++ + +GL
Sbjct: 152 DIAEKKVYVELMEGL 166
>gi|218887969|ref|YP_002437290.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758923|gb|ACL09822.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 210
Score = 97.1 bits (240), Expect = 3e-17, Method: Composition-based stats.
Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 27/206 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+++G V HGL+GE+ V + P+L GT WLR GR R + R H
Sbjct: 6 FIEIGLVGRPHGLRGEVGVDFWAESPDL---LRGTLWLRP---GRGAPRPHTVAAVRRHQ 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++ FEGI A L G +L + PE + E Y +L+G+RV++ +TG +
Sbjct: 60 GRP--LVLFEGIADRSAAETLRGMHVLVPKDRLPEPAEDEVYLHELLGLRVLLHDTGAAL 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GT+ +V G ++ S A G+ V +P VEE V +D++
Sbjct: 118 GTLDDVQMPGGQEVW-------------------SIRTADGKEVLLPAVEEFVASIDLDA 158
Query: 257 REMQITPPKGLLELNLRTDERSKKER 282
RE++ITPP GL+EL L E+S +
Sbjct: 159 REVRITPPPGLMELYLEAPEKSAARK 184
>gi|223044254|ref|ZP_03614291.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
gi|417907104|ref|ZP_12550880.1| 16S rRNA processing protein RimM [Staphylococcus capitis VCU116]
gi|222442404|gb|EEE48512.1| 16S rRNA processing protein RimM [Staphylococcus capitis SK14]
gi|341596735|gb|EGS39326.1| 16S rRNA processing protein RimM [Staphylococcus capitis VCU116]
Length = 167
Score = 96.7 bits (239), Expect = 4e-17, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF E RF PG + + E I E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRF-QPGENLIVKH--NNEDI-EYTVSSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + L G L R+ + EL++ EFY D++G V +T +
Sbjct: 59 FH--MLKFEGINNINDIEHLKGDYLYQERDHEDIELDEHEFYYSDIIGC-TVFDDTDTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++E++V +D+ G
Sbjct: 116 GRVINIFETGAND---------VWVVKGDKE------------YLIPYIEDVVKDIDVEG 154
Query: 257 REMQITPPKGLLE 269
R ++ITP KGLL+
Sbjct: 155 RSIKITPMKGLLD 167
>gi|300361926|ref|ZP_07058103.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
gi|300354545|gb|EFJ70416.1| 16S rRNA processing protein RimM [Lactobacillus gasseri JV-V03]
Length = 173
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + S HGL GE+ V +TDFPE R +++ +E I E R H
Sbjct: 3 EYFEVGKILSPHGLTGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVEAT----RRH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +++ FEGID ++QA + G L E D+ EL +G +Y +D++ V +TGE
Sbjct: 59 --KQFYLVKFEGIDDIDQAEKVRGKELYVAETDQQELPEGSYYFKDILNCPVYDAKTGEK 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 117 LGVLANIETPGANDIWEI-------------------KPEHGKSFWIPNIESVVNNVDLA 157
Query: 256 GREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 158 NKRIEVTLLEGLRDEN 173
>gi|392971843|ref|ZP_10337235.1| 16S rRNA-processing protein RimM [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046833|ref|ZP_10902302.1| 16S rRNA-processing protein RimM [Staphylococcus sp. OJ82]
gi|392509556|emb|CCI60525.1| 16S rRNA-processing protein RimM [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763529|gb|EJX17622.1| 16S rRNA-processing protein RimM [Staphylococcus sp. OJ82]
Length = 167
Score = 95.9 bits (237), Expect = 7e-17, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 31/194 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ +K ++DF + RF G + ++ + E K+ R H G
Sbjct: 3 VEVGKIVNTHGIKGEVKIKSNSDFTDKRFQPGGIVEIARK---DKAPLEFKIASYRMHKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGEL 195
+LTFEGI+ + L G TLL +E D E+E G EFY D++G V ++T
Sbjct: 60 LH--MLTFEGINNINDIEYLKGETLL-QERDHEEIELGEHEFYYSDIIGCTVFNEDTP-- 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+ +F +GAND V V++G +E IP++ ++V +D+
Sbjct: 115 IGRVIEIFETGAND---------VWVVKGDKE------------YLIPYIADVVKEIDVE 153
Query: 256 GREMQITPPKGLLE 269
GR +QITP +GLL+
Sbjct: 154 GRRIQITPMEGLLD 167
>gi|161507705|ref|YP_001577661.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus DPC
4571]
gi|417008881|ref|ZP_11945702.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus MTCC
5463]
gi|172048318|sp|A8YVT3.1|RIMM_LACH4 RecName: Full=Ribosome maturation factor RimM
gi|160348694|gb|ABX27368.1| rRNA processing protein [Lactobacillus helveticus DPC 4571]
gi|328465658|gb|EGF36875.1| 16S rRNA-processing protein RimM [Lactobacillus helveticus MTCC
5463]
Length = 171
Score = 95.9 bits (237), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF LR +T R + + R
Sbjct: 1 MEYFDVARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRS-----DTNRTLTVEKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F+ I ++QA L G L+ E DR EL DG +Y +D+ V+ +ETG+
Sbjct: 55 -PFKQFWLIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +V++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 114 RIGKIVDIQSPGANDIWLV-------------------REDDGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 AAKKVYVELMEGL 167
>gi|268319237|ref|YP_003292893.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
gi|262397612|emb|CAX66626.1| 16S rRNA-processing protein rimM [Lactobacillus johnsonii FI9785]
Length = 173
Score = 95.5 bits (236), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + S HGL+GE+ V +TDFPE R T +++ E I E + R H
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVE----NTRRH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +++ FE ID ++QA + L E D+ EL +G +Y +D++ V ETGE
Sbjct: 59 --KQFYLVKFEKIDDIDQAEKICSKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEK 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 117 LGVLENIETPGANDIWEI-------------------KSEKGKSFWIPNIESVVKKVDLA 157
Query: 256 GREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 158 NKRIEVTLLEGLRDEN 173
>gi|260101391|ref|ZP_05751628.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
gi|260084802|gb|EEW68922.1| 16S rRNA processing protein RimM [Lactobacillus helveticus DSM
20075]
Length = 184
Score = 95.5 bits (236), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF LR +T R + + R
Sbjct: 14 MEYFDVARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRS-----DTNRTLTVEKSR- 67
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F+ I ++QA L G L+ E DR EL DG +Y +D+ V+ +ETG+
Sbjct: 68 -PFKQFWLIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGK 126
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +V++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 127 RIGKIVDIQSPGANDIWLV-------------------REDDGKEYWIPNIADVVKKVDV 167
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 168 AAKKVYVELMEGL 180
>gi|379795606|ref|YP_005325604.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872596|emb|CCE58935.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 167
Score = 95.5 bits (236), Expect = 8e-17, Method: Composition-based stats.
Identities = 68/193 (35%), Positives = 106/193 (54%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG + V + I E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDIRF-QPGQ--VLTVVYNNKDI-EYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + ELE+ EFY D++G V E G +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIELEENEFYYSDIIGCTVFDNE-GTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+G++E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGAKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLLE
Sbjct: 155 KKIIITPMEGLLE 167
>gi|397600895|gb|EJK57756.1| hypothetical protein THAOC_22171 [Thalassiosira oceanica]
Length = 281
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 43/232 (18%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGR--- 133
++++G + HG++G + + TDF E R PGTR L+ + R + REV+L++GR
Sbjct: 54 YIELGTIIGAHGVRGLMKLASITDFSEHRLCKPGTRHLK--LPDRRSPREVQLVEGRPMR 111
Query: 134 ---EHPGQK---SWILTFEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGM 185
E G ++++ E +D EQA + G L A EG+R + LE E+ DLVGM
Sbjct: 112 SDAETAGSDVSPTYLIRLETVDDREQALKMKGCVLYALEGERVDDFLEPDEYIVSDLVGM 171
Query: 186 RVVMKETGE----------LVGTVVNVFNSG--------ANDLLHVMCYSSVNVIEGSEE 227
V + ++ + VG V V DLL V+ +
Sbjct: 172 NVFLDDSDDEHKGKSFEELFVGNVKGVVLGSDMCATPGLGQDLLEVVLPRRL-------- 223
Query: 228 ASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSK 279
D LV +PFV EIV VD+NG+ + + PP GLL+L+ R +E+ +
Sbjct: 224 ----GGDPGDDLVLLPFVPEIVTGVDLNGKMVSVKPPGGLLDLSYRREEKVR 271
>gi|42519386|ref|NP_965316.1| 16S rRNA-processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227890251|ref|ZP_04008056.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|385825647|ref|YP_005861989.1| 16S rRNA processing protein [Lactobacillus johnsonii DPC 6026]
gi|417837349|ref|ZP_12483588.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii pf01]
gi|59798804|sp|Q74IQ5.1|RIMM_LACJO RecName: Full=Ribosome maturation factor RimM
gi|41583674|gb|AAS09282.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533]
gi|227849065|gb|EEJ59151.1| 16S rRNA processing protein [Lactobacillus johnsonii ATCC 33200]
gi|329667091|gb|AEB93039.1| 16S rRNA processing protein [Lactobacillus johnsonii DPC 6026]
gi|338762544|gb|EGP13812.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii pf01]
Length = 173
Score = 95.1 bits (235), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + S HGL+GE+ V +TDFPE R T +++ E I E + R H
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVE----NTRRH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +++ FE ID ++QA + L E D+ EL +G +Y +D++ V ETGE
Sbjct: 59 --KQFYLVKFEKIDDIDQAEKICSKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEK 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 117 LGVLENIETPGANDIWEI-------------------KPEKGKSFWIPNIESVVKKVDLA 157
Query: 256 GREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 158 NKRIEVTLLEGLRDEN 173
>gi|86606190|ref|YP_474953.1| 16S rRNA-processing protein RimM [Synechococcus sp. JA-3-3Ab]
gi|109893059|sp|Q2JUD0.1|RIMM_SYNJA RecName: Full=Ribosome maturation factor RimM
gi|86554732|gb|ABC99690.1| 16S rRNA processing protein RimM [Synechococcus sp. JA-3-3Ab]
Length = 186
Score = 95.1 bits (235), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V + HGL+G + VK +DFPE R T PG RWL++ + LI+G+ P +
Sbjct: 12 VGQVVAAHGLRGWLRVKCWSDFPE-RLTEPGPRWLQRDSDPEPLLH--PLIEGQFFPAKG 68
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++ EGI A VG+ +L R LE E++ DL+G+ V + G L+G V
Sbjct: 69 LYLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQ--GRLLGHV 126
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ +G D+L + + R V IPFV+ +VP+VD+ E+
Sbjct: 127 SAIWAAG-QDVLEI-------------------ATPDKRQVLIPFVKALVPVVDLEKGEL 166
Query: 260 QITPPKGLLELNLRTD 275
Q+ PP GL+E L D
Sbjct: 167 QVQPPPGLVESFLGQD 182
>gi|227904206|ref|ZP_04022011.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
gi|227868225|gb|EEJ75646.1| 16S rRNA processing protein [Lactobacillus acidophilus ATCC 4796]
Length = 187
Score = 94.7 bits (234), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 74 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGR 133
G+ + DV + + HGL GE+ V TDFPE RF L+ + TI+ +
Sbjct: 16 GMQYFDVARILTTHGLHGEVKVNVITDFPEDRFAEGMQLELKDDIDRVLTIK-------K 68
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
P ++ W+L F+ I +++A L G L+ E DR EL DG +Y +D+ V+ ETG
Sbjct: 69 SRPFKQFWLLQFDEITDIDEAEKLRGKILVISEKDRGELPDGVYYYKDIFDCGVIDNETG 128
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ +G + ++ + GAND+ V + +G+ WIP + ++V +D
Sbjct: 129 KRLGKITDIQSPGANDIWLV-------------------HEDNGKEYWIPNIADVVKKID 169
Query: 254 MNGREMQITPPKGL 267
+ +++ + +GL
Sbjct: 170 IADKKVYVELMEGL 183
>gi|225022024|ref|ZP_03711216.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
gi|224945221|gb|EEG26430.1| hypothetical protein CORMATOL_02056 [Corynebacterium matruchotii
ATCC 33806]
Length = 169
Score = 92.8 bits (229), Expect = 5e-16, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE+ V P+TD P++R+ PGT + G++ RE L P Q
Sbjct: 7 IGRVIKAHGIRGEVVVDPTTDEPDIRYA-PGT-----VLHGKQGKREYTLTVAHARPHQG 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++TF+ + A L G+ A + D + E+G FY DL G+RV+ + G +GTV
Sbjct: 61 RLLVTFDEVPDRTAAESLRGTQFWAEQLDIDDDEEG-FYDHDLTGLRVIHE--GAEIGTV 117
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + A +L V A G+ +PFV +IVP VD+
Sbjct: 118 TGVMSGPAGTILEVEL-------------------AGGKQALVPFVFDIVPDVDLEAGTC 158
Query: 260 QITPPKGLLEL 270
ITPP GLL++
Sbjct: 159 TITPPDGLLDI 169
>gi|213964701|ref|ZP_03392901.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
gi|213952894|gb|EEB64276.1| 16S rRNA processing protein RimM [Corynebacterium amycolatum SK46]
Length = 169
Score = 92.8 bits (229), Expect = 6e-16, Method: Composition-based stats.
Identities = 70/195 (35%), Positives = 92/195 (47%), Gaps = 30/195 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V +G V HG++GE+ V +TD PE RF T +LG + RE +L
Sbjct: 5 DMVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTT------LLGVQAGREEQLTVKTAR 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P Q ++ FE I +A G A P ED +FY +LVG+ VV G
Sbjct: 59 PHQGRLLVRFEEIPGRNEAERHRGMKFYAE----PVFEDEDFYDFELVGLHVV--HNGTD 112
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ + A+ LL V DA GR V IP VEEIVP VD+
Sbjct: 113 IGEVTSIVRAPAHRLLEVTL------------------DAGGREVLIPLVEEIVPEVDLE 154
Query: 256 GREMQITPPKGLLEL 270
+ ITPP+GLLEL
Sbjct: 155 NSTVTITPPEGLLEL 169
>gi|300783879|ref|YP_003764170.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
gi|384147119|ref|YP_005529935.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei S699]
gi|399535763|ref|YP_006548425.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei S699]
gi|299793393|gb|ADJ43768.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei U32]
gi|340525273|gb|AEK40478.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei S699]
gi|398316533|gb|AFO75480.1| 16S rRNA processing protein RimM [Amycolatopsis mediterranei S699]
Length = 170
Score = 92.4 bits (228), Expect = 6e-16, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE++V TD PE RF + L + RE+ + REH G
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPEQRFKIGAAVTTK---LRDGSKRELTIAAAREHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ LLA P ED EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFEEVLTRDVAETLRGALLLADTATLPPTEDPDEFYDHELAGLRAELTD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV + +S A +LL + D GR V +PFV IVP VD+ G
Sbjct: 117 GKVVEIVHSPAGELLEL--------------------DVEGREVLVPFVHAIVPTVDIAG 156
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 157 GRVVLDPPEGLLD 169
>gi|58337564|ref|YP_194149.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus NCFM]
gi|67461233|sp|Q5FJK6.1|RIMM_LACAC RecName: Full=Ribosome maturation factor RimM
gi|58254881|gb|AAV43118.1| 16S rRNA processing protein [Lactobacillus acidophilus NCFM]
Length = 171
Score = 92.4 bits (228), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV + + HGL GE+ V TDFPE RF L+ + TI+ +
Sbjct: 1 MQYFDVARILTTHGLHGEVKVNVITDFPEDRFAEGMQLELKDDIDRVLTIK-------KS 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W+L F+ I +++A L G L+ E DR EL DG +Y +D+ V+ ETG+
Sbjct: 54 RPFKQFWLLQFDEITDIDEAEKLRGKILVISEKDRGELPDGVYYYKDIFDCGVIDNETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + ++V +D+
Sbjct: 114 RLGKITDIQSPGANDIWLV-------------------HEDNGKEYWIPNIADVVKKIDI 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ADKKVYVELMEGL 167
>gi|305681419|ref|ZP_07404226.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
gi|305659624|gb|EFM49124.1| 16S rRNA processing protein RimM [Corynebacterium matruchotii ATCC
14266]
Length = 169
Score = 91.3 bits (225), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE+ V P+TD P++R+ PGT + G++ RE L P Q
Sbjct: 7 IGRVIKAHGIRGEVVVDPTTDEPDIRYA-PGT-----VLHGKQGKREHTLTVAHARPHQG 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++TF+ + A L G+ A + D + E+G FY DL G+RV+ + G +GTV
Sbjct: 61 RLLVTFDEVPDRTAAESLRGTQFWAEQLDIDDDEEG-FYDHDLTGLRVIHE--GAEIGTV 117
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + A +L V A G+ +PFV +IVP VD+
Sbjct: 118 TGVMSGPAGTILEVEL-------------------AGGKQALVPFVFDIVPEVDLEAGTC 158
Query: 260 QITPPKGLLEL 270
ITPP GLL++
Sbjct: 159 TITPPDGLLDI 169
>gi|73662837|ref|YP_301618.1| 16S rRNA-processing protein RimM [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|418576376|ref|ZP_13140522.1| RimM protein required for 16S rRNA processing [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|109893055|sp|Q49X25.1|RIMM_STAS1 RecName: Full=Ribosome maturation factor RimM
gi|72495352|dbj|BAE18673.1| RimM protein required for 16S rRNA processing [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|379325438|gb|EHY92570.1| RimM protein required for 16S rRNA processing [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 168
Score = 91.3 bits (225), Expect = 2e-15, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 30/194 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V++G + + HG++GEI VK ++DF E RF PG + ++ +E + E + R H G
Sbjct: 3 VEIGKIVNTHGIKGEIKVKSNSDFTETRF-QPGELVIIERK-NKEPL-EFTIASYRMHKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGEL 195
+LTFEGI+ + L G T++ +E D E+E G EFY D++G V +
Sbjct: 60 LH--MLTFEGINNINDIEYLKGETIM-QERDHEEIELGEHEFYYSDIIGC-TVFDDDDTP 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +F +GAND V V++G +E IP++ ++V +D+
Sbjct: 116 IGRVTEIFETGAND---------VWVVKGDKE------------YLIPYIADVVKDIDVE 154
Query: 256 GREMQITPPKGLLE 269
GR +QITP +GLL+
Sbjct: 155 GRRIQITPMEGLLD 168
>gi|239826593|ref|YP_002949217.1| 16S rRNA-processing protein RimM [Geobacillus sp. WCH70]
gi|259585645|sp|C5D8U4.1|RIMM_GEOSW RecName: Full=Ribosome maturation factor RimM
gi|239806886|gb|ACS23951.1| 16S rRNA processing protein RimM [Geobacillus sp. WCH70]
Length = 172
Score = 91.3 bits (225), Expect = 2e-15, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ T ++ E +E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFM-----EKSKEPVAVTVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L FEG D + G+ L E EL++GE+Y +++G VV +E GE
Sbjct: 59 VHKSFDLLAFEGYDNINLVEKFKGAMLKVPESQLGELDEGEYYFHEIIGCTVVTEE-GET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV + GAND+ V +G+ V IP++E++V VD+
Sbjct: 118 IGTVKEILTPGANDVWVV-------------------KRDNGKEVLIPYIEDVVKNVDVE 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 TKTITIRPMEGLLE 172
>gi|347734045|ref|ZP_08867097.1| 16S rRNA processing protein RimM [Desulfovibrio sp. A2]
gi|347517137|gb|EGY24330.1| 16S rRNA processing protein RimM [Desulfovibrio sp. A2]
Length = 204
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G V HGL+GE+ V D P+L GT WLR GR R + R H
Sbjct: 6 YIEIGLVGRPHGLRGEVGVDFWADSPDL---LRGTLWLRP---GRGAPRPHTVAAVRRHQ 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++ FEGI A L G +L + PE ++ E Y +L+G+RVV+ +TG +
Sbjct: 60 GRP--LVLFEGIADRSAAETLRGMHVLVPKDRLPEPDEDEVYLHELLGLRVVLHDTGAPL 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GT+ +V G G E S D G+ V +P VEE V +D++
Sbjct: 118 GTLDDVQMPG-----------------GQEVWSIRTPD--GKEVLLPAVEEFVASIDLDA 158
Query: 257 REMQITPPKGLLELNLRTDER 277
E++ITPP GL+EL L R
Sbjct: 159 GEVRITPPPGLIELYLEAPTR 179
>gi|418559196|ref|ZP_13123742.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21252]
gi|371975487|gb|EHO92781.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21252]
Length = 167
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG +++ HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIFNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|387780348|ref|YP_005755146.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|344177450|emb|CCC87918.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 167
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDIEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP KGLL+
Sbjct: 155 KKIIITPMKGLLD 167
>gi|227892626|ref|ZP_04010431.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
gi|227865558|gb|EEJ72979.1| 16S rRNA processing protein [Lactobacillus ultunensis DSM 16047]
Length = 171
Score = 90.9 bits (224), Expect = 2e-15, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV V + HGL GE+ V TDFPE RF L+ E + VK GR
Sbjct: 1 MQYYDVARVLTTHGLNGEVKVSVITDFPEDRFAVGMHLALKNNT---EDVLTVK--KGR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ FE I ++ A L G L+ E DR EL +G +Y +D+ V+ E+G
Sbjct: 55 -PFKQFWLVQFEEIKDIDAAEKLRGQVLVVSEDDRGELPEGAYYYKDIFDCDVIDNESGA 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + SG+ WIP + ++V VD+
Sbjct: 114 RLGKITDIQSPGANDVWLV-------------------HEDSGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ANKKVYVELMEGL 167
>gi|335429714|ref|ZP_08556612.1| 16S rRNA-processing protein RimM [Haloplasma contractile SSD-17B]
gi|334889724|gb|EGM28009.1| 16S rRNA-processing protein RimM [Haloplasma contractile SSD-17B]
Length = 168
Score = 90.5 bits (223), Expect = 2e-15, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 28/194 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + + HGL+GE+ +K TDF E R+ T +L G E I E+++ R H
Sbjct: 3 DYLYVGKIANTHGLKGELKIKSDTDFKEERYKTGSKLYLSS---GDEMI-ELEVATHRVH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ F+G+D + G T+ E EL+DG++Y DL+G V +
Sbjct: 59 KNYD--LVKFKGLDNINDVEQYKGCTVHVHESQLDELDDGDYYYNDLIGSAVY---GNDY 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V N GA+DLL + S + V IPFVEE V VD+
Sbjct: 114 IGIVKDVLNHGASDLLVI-------------------KRESKKEVMIPFVEEFVETVDLE 154
Query: 256 GREMQITPPKGLLE 269
+E++I +GL++
Sbjct: 155 KKEIKINEIEGLID 168
>gi|421150188|ref|ZP_15609844.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|394329578|gb|EJE55680.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. Newbould 305]
Length = 167
Score = 90.1 bits (222), Expect = 3e-15, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHENIVLEENEFYYSDIIGCTVFDDQEAP-I 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ E+V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIAEVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|314933417|ref|ZP_07840782.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
gi|313653567|gb|EFS17324.1| 16S rRNA processing protein RimM [Staphylococcus caprae C87]
Length = 167
Score = 90.1 bits (222), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF E RF PG + + E + + + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTETRF-QPGENLIVKH--NNEDL-QYTVSSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + L G L R+ + EL++ E+Y D++G V +T +
Sbjct: 59 FH--MLKFEGINNINDIEHLKGDYLYQERDHEDIELDEHEYYYSDIIGC-TVFDDTDTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++E++V +D+ G
Sbjct: 116 GRVINIFETGAND---------VWVVKGDKE------------YLIPYIEDVVKDIDVEG 154
Query: 257 REMQITPPKGLLE 269
+ ++ITP +GLL+
Sbjct: 155 KSIKITPMEGLLD 167
>gi|418645802|ref|ZP_13207920.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-55]
gi|443639587|ref|ZP_21123593.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21196]
gi|375022335|gb|EHS15818.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-55]
gi|443406794|gb|ELS65365.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21196]
Length = 167
Score = 89.7 bits (221), Expect = 4e-15, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQEAP-I 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ E+V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIAEVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|345017767|ref|YP_004820120.1| ribosome maturation factor rimM [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033110|gb|AEM78836.1| Ribosome maturation factor rimM [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 167
Score = 89.7 bits (221), Expect = 4e-15, Method: Composition-based stats.
Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRETIREVKLIDGR 133
D+ +VG V S HG++GE+ V P T+ PE RF W+ QQ L + I VK+I
Sbjct: 3 DYYNVGKVTSAHGIKGEVKVYPLTNVPE-RFYDLEYVWIFDDQQRLHKYDIEYVKII--- 58
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K + +GIDT A L G+ L + ELE+ E++ +DLVGM+V +E G
Sbjct: 59 ----SKGVCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEE-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+GT+V V +GAND V VI+ E R + IP ++E+V VD
Sbjct: 114 SFLGTLVEVLKTGAND---------VYVIKTEE-----------REILIPAIKEVVKKVD 153
Query: 254 MNGREMQITPPKGL 267
++ + M + +GL
Sbjct: 154 VDNKVMVVHLLEGL 167
>gi|416839284|ref|ZP_11902678.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O11]
gi|416847448|ref|ZP_11907170.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O46]
gi|323441015|gb|EGA98722.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O11]
gi|323442332|gb|EGA99962.1| 16S rRNA-processing protein RimM [Staphylococcus aureus O46]
Length = 167
Score = 89.7 bits (221), Expect = 5e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDIEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKISITPMEGLLD 167
>gi|404418471|ref|ZP_11000238.1| 16S rRNA-processing protein RimM [Staphylococcus arlettae CVD059]
gi|403489064|gb|EJY94642.1| 16S rRNA-processing protein RimM [Staphylococcus arlettae CVD059]
Length = 168
Score = 89.7 bits (221), Expect = 5e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 28/193 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF + RF PG +Q + V R H G
Sbjct: 3 VEVGKIVNTHGIKGEVKVKSNSDFTDTRF-QPGEVLTIEQTHKEPVMLTVA--SHRMHKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L G LL R+ + EL + EFY D++G V E +
Sbjct: 60 LH--MLTFEGINNINDIEHLKGQVLLQERDHEEIELAENEFYYSDIIGCTVFDDEDTP-I 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+ +F +GAND V V++G +E IP++ ++V VD+ G
Sbjct: 117 GRVIEIFETGAND---------VWVVKGDKE------------YLIPYIADVVKEVDVEG 155
Query: 257 REMQITPPKGLLE 269
R + ITP +GLL+
Sbjct: 156 RTIHITPLEGLLD 168
>gi|315038604|ref|YP_004032172.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
gi|312276737|gb|ADQ59377.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL
1112]
Length = 171
Score = 89.4 bits (220), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV + + HGL GE+ V TDFPE RF Q L +T R + + R
Sbjct: 1 MQYFDVAKILTTHGLNGEVKVNVITDFPEDRFAEG-----MQLALKADTDRILTIKKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W+L F+ ++ +++A L G L+ E +R EL +G +Y +D+ V+ +E+G+
Sbjct: 55 -PFKQFWLLQFDEVNDIDEAEKLRGQILVVSEDNRGELPEGVYYYKDIFDCDVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 114 RLGKITDIQSPGANDIWLV-------------------HEDDGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+ +++ + +GL
Sbjct: 155 SNKKVYVELMEGL 167
>gi|88194946|ref|YP_499746.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|122539706|sp|Q2FZ44.1|RIMM_STAA8 RecName: Full=Ribosome maturation factor RimM
gi|87202504|gb|ABD30314.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 167
Score = 89.4 bits (220), Expect = 6e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-AVFDDQKTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|384547483|ref|YP_005736736.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
ED133]
gi|298694532|gb|ADI97754.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 167
Score = 89.4 bits (220), Expect = 6e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDIEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|417903375|ref|ZP_12547222.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21269]
gi|341849996|gb|EGS91129.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21269]
Length = 167
Score = 89.0 bits (219), Expect = 7e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEYLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDIEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|420185456|ref|ZP_14691548.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM040]
gi|394254442|gb|EJD99411.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM040]
Length = 167
Score = 89.0 bits (219), Expect = 7e-15, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E+ +I R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVISYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLKFEGINNINEIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IETKTIKITPMEGLLD 167
>gi|357022074|ref|ZP_09084305.1| 16S rRNA-processing protein RimM [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479822|gb|EHI12959.1| 16S rRNA-processing protein RimM [Mycobacterium thermoresistibile
ATCC 19527]
Length = 173
Score = 89.0 bits (219), Expect = 8e-15, Method: Composition-based stats.
Identities = 70/197 (35%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V+ TD P+ RF PG R + G RE + R
Sbjct: 1 MDLV-VGRVVKAHGITGEVVVEVRTDDPDSRFA-PGVRLRGRPGRGDGPEREFVVESSRP 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ GI+ A L G + D P +ED EFY L G+RV + G
Sbjct: 59 HSGR--LLVRLAGIEDRTAAEALRGILFVIDSADLPPIEDPDEFYDHQLEGLRVRTVD-G 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VGTV V ++ A +LL V A R V +PFV EIVP V
Sbjct: 116 REVGTVSEVLHTAAGELLAVR--------------------AGEREVLVPFVREIVPTVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ R ++I PP GLLEL
Sbjct: 156 LKERTIEIDPPDGLLEL 172
>gi|302851476|ref|XP_002957262.1| hypothetical protein VOLCADRAFT_98328 [Volvox carteri f.
nagariensis]
gi|300257512|gb|EFJ41760.1| hypothetical protein VOLCADRAFT_98328 [Volvox carteri f.
nagariensis]
Length = 2763
Score = 89.0 bits (219), Expect = 8e-15, Method: Composition-based stats.
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 29/237 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR------ETIREVKL 129
++V V V VHG++GE+ ++ STD P RF +L R ++ + L
Sbjct: 94 EYVQVAQVAGVHGVRGELRLELSTDQPRERFRAGKRLYLLPPYSARGKDSAGSGLQTLPL 153
Query: 130 I-----DGREHP---GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTR 180
I + P G+++W++ E + + Q L G + DR L D EFY
Sbjct: 154 IPVTARGAKMQPRGKGEEAWVVALEEVTSRTQVEQLRGYLVYCAAADRGPLRDPDEFYVT 213
Query: 181 DLVGMRVVMKETGELVGTVVNVFNS-GANDLLHVMCYSSVNVIEGSEEASSSASDASGRL 239
D++G V+ + T +VG VV+V+ G +D L V + +EE + R
Sbjct: 214 DIIGCTVIHQATRSMVGLVVDVYGGMGTHDTLRVK-------LRANEE---DVLKSRIRY 263
Query: 240 VWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296
IPF + I P++D+ R +++ PP+GLL+ L T+E+ KK E K +K Q R
Sbjct: 264 CMIPFAKAICPVLDLTNRTLEVAPPEGLLD--LVTEEKLKKPLSD-EAKAKKLAQLR 317
>gi|15924229|ref|NP_371763.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926822|ref|NP_374355.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus N315]
gi|21282851|ref|NP_645939.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MW2]
gi|49486078|ref|YP_043299.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651808|ref|YP_186114.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87162204|ref|YP_493829.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148267730|ref|YP_001246673.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|150393788|ref|YP_001316463.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|151221361|ref|YP_001332183.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979560|ref|YP_001441819.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu3]
gi|221142029|ref|ZP_03566522.1| 16S rRNA-processing protein [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315597|ref|ZP_04838810.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731857|ref|ZP_04866022.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733523|ref|ZP_04867688.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006026|ref|ZP_05144627.2| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425293|ref|ZP_05601718.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427953|ref|ZP_05604351.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430586|ref|ZP_05606968.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433347|ref|ZP_05609705.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257436189|ref|ZP_05612236.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257795705|ref|ZP_05644684.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|258415929|ref|ZP_05682199.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|258421691|ref|ZP_05684615.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|258434847|ref|ZP_05688921.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|258444577|ref|ZP_05692906.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|258447590|ref|ZP_05695734.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|258449432|ref|ZP_05697535.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|258452537|ref|ZP_05700543.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|258454811|ref|ZP_05702775.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|262048137|ref|ZP_06021024.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262051868|ref|ZP_06024084.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|269202855|ref|YP_003282124.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|282892726|ref|ZP_06300961.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|282903793|ref|ZP_06311681.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282905557|ref|ZP_06313412.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908532|ref|ZP_06316362.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910811|ref|ZP_06318614.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914015|ref|ZP_06321802.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282918937|ref|ZP_06326672.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282920022|ref|ZP_06327751.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282924060|ref|ZP_06331736.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282927580|ref|ZP_06335196.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|283957981|ref|ZP_06375432.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293501047|ref|ZP_06666898.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510008|ref|ZP_06668716.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|293526595|ref|ZP_06671280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|294848233|ref|ZP_06788980.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|295406174|ref|ZP_06815981.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295427725|ref|ZP_06820357.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296274796|ref|ZP_06857303.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MR1]
gi|297208117|ref|ZP_06924548.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297244402|ref|ZP_06928285.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297591316|ref|ZP_06949954.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300912197|ref|ZP_07129640.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381197|ref|ZP_07363850.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014430|ref|YP_005290666.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus VC40]
gi|384861833|ref|YP_005744553.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384864466|ref|YP_005749825.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384867878|ref|YP_005748074.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869773|ref|YP_005752487.1| Ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus T0131]
gi|385781467|ref|YP_005757638.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386830774|ref|YP_006237428.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387142848|ref|YP_005731241.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387150382|ref|YP_005741946.1| 16S rRNA processing protein RimM [Staphylococcus aureus 04-02981]
gi|415683829|ref|ZP_11449031.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|415686428|ref|ZP_11450517.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691088|ref|ZP_11453327.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS03]
gi|417650119|ref|ZP_12299896.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21189]
gi|417651154|ref|ZP_12300917.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21172]
gi|417797953|ref|ZP_12445139.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21310]
gi|417802684|ref|ZP_12449741.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21318]
gi|417887091|ref|ZP_12531230.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21195]
gi|417892175|ref|ZP_12536229.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21201]
gi|417896065|ref|ZP_12540032.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21235]
gi|417899983|ref|ZP_12543882.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21259]
gi|418281380|ref|ZP_12894191.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21178]
gi|418286419|ref|ZP_12899065.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21209]
gi|418316105|ref|ZP_12927549.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21340]
gi|418317694|ref|ZP_12929110.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21232]
gi|418321614|ref|ZP_12932953.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424379|ref|ZP_12997501.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS1]
gi|418427374|ref|ZP_13000386.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS2]
gi|418430215|ref|ZP_13003131.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418433180|ref|ZP_13005957.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436851|ref|ZP_13008653.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439723|ref|ZP_13011430.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442775|ref|ZP_13014377.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445834|ref|ZP_13017310.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS8]
gi|418448778|ref|ZP_13020170.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS9]
gi|418451602|ref|ZP_13022936.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS10]
gi|418454658|ref|ZP_13025920.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418457534|ref|ZP_13028737.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418561392|ref|ZP_13125883.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21262]
gi|418566618|ref|ZP_13130991.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21264]
gi|418569042|ref|ZP_13133382.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21272]
gi|418570838|ref|ZP_13135099.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21283]
gi|418572216|ref|ZP_13136428.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21333]
gi|418579070|ref|ZP_13143165.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418582073|ref|ZP_13146151.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418597687|ref|ZP_13161209.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21342]
gi|418599627|ref|ZP_13163107.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21343]
gi|418603096|ref|ZP_13166487.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21345]
gi|418637974|ref|ZP_13200277.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-3]
gi|418642850|ref|ZP_13205036.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-24]
gi|418647503|ref|ZP_13209567.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649747|ref|ZP_13211775.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-91]
gi|418654729|ref|ZP_13216625.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-99]
gi|418655389|ref|ZP_13217252.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-105]
gi|418658899|ref|ZP_13220596.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-111]
gi|418661513|ref|ZP_13223098.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-122]
gi|418873560|ref|ZP_13427855.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875175|ref|ZP_13429435.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418878088|ref|ZP_13432323.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880916|ref|ZP_13435135.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883845|ref|ZP_13438040.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886500|ref|ZP_13440648.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418891872|ref|ZP_13445987.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418894938|ref|ZP_13449033.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418897776|ref|ZP_13451846.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900646|ref|ZP_13454703.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418903448|ref|ZP_13457489.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418906174|ref|ZP_13460201.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418908950|ref|ZP_13462953.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG149]
gi|418911846|ref|ZP_13465829.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG547]
gi|418914337|ref|ZP_13468309.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418917034|ref|ZP_13470993.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418920316|ref|ZP_13474249.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418922821|ref|ZP_13476738.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418925472|ref|ZP_13479374.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928496|ref|ZP_13482382.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418931309|ref|ZP_13485150.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418934141|ref|ZP_13487964.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418946938|ref|ZP_13499337.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-157]
gi|418955399|ref|ZP_13507339.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-189]
gi|418982152|ref|ZP_13529860.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985820|ref|ZP_13533506.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1500]
gi|418988060|ref|ZP_13535733.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418991101|ref|ZP_13538762.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1096]
gi|418993859|ref|ZP_13541495.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG290]
gi|419774292|ref|ZP_14300262.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784918|ref|ZP_14310676.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-M]
gi|422742356|ref|ZP_16796362.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422745530|ref|ZP_16799469.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424768077|ref|ZP_18195370.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CM05]
gi|424785069|ref|ZP_18211872.1| 16S rRNA processing protein RimM [Staphylococcus aureus CN79]
gi|440706052|ref|ZP_20886801.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21282]
gi|440734685|ref|ZP_20914297.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636861|ref|ZP_21120954.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21236]
gi|448742255|ref|ZP_21724205.1| 16S rRNA-processing protein RimM [Staphylococcus aureus KT/314250]
gi|448744057|ref|ZP_21725961.1| 16S rRNA-processing protein RimM [Staphylococcus aureus KT/Y21]
gi|54039059|sp|P66656.1|RIMM_STAAN RecName: Full=Ribosome maturation factor RimM
gi|54039060|sp|P66657.1|RIMM_STAAW RecName: Full=Ribosome maturation factor RimM
gi|54041929|sp|P66655.1|RIMM_STAAM RecName: Full=Ribosome maturation factor RimM
gi|56749523|sp|Q6G9X4.1|RIMM_STAAS RecName: Full=Ribosome maturation factor RimM
gi|67461252|sp|Q5HGJ3.1|RIMM_STAAC RecName: Full=Ribosome maturation factor RimM
gi|109893052|sp|Q2FHJ9.1|RIMM_STAA3 RecName: Full=Ribosome maturation factor RimM
gi|166226477|sp|A7X1K9.1|RIMM_STAA1 RecName: Full=Ribosome maturation factor RimM
gi|172048857|sp|A6QGD9.1|RIMM_STAAE RecName: Full=Ribosome maturation factor RimM
gi|189040856|sp|A6U158.1|RIMM_STAA2 RecName: Full=Ribosome maturation factor RimM
gi|189040857|sp|A5ISC4.1|RIMM_STAA9 RecName: Full=Ribosome maturation factor RimM
gi|13701039|dbj|BAB42334.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus N315]
gi|14247009|dbj|BAB57401.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21204290|dbj|BAB94987.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus MW2]
gi|49244521|emb|CAG42950.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285994|gb|AAW38088.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus COL]
gi|87128178|gb|ABD22692.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|147740799|gb|ABQ49097.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH9]
gi|149946240|gb|ABR52176.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JH1]
gi|150374161|dbj|BAF67421.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721695|dbj|BAF78112.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|253724409|gb|EES93138.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728577|gb|EES97306.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271750|gb|EEV03888.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257274794|gb|EEV06281.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278714|gb|EEV09333.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281440|gb|EEV11577.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus E1410]
gi|257284471|gb|EEV14591.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M876]
gi|257789677|gb|EEV28017.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9781]
gi|257839265|gb|EEV63739.1| ribosome maturation factor rimM [Staphylococcus aureus A9763]
gi|257842377|gb|EEV66802.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9719]
gi|257849208|gb|EEV73190.1| ribosome maturation factor rimM [Staphylococcus aureus A9299]
gi|257850070|gb|EEV74023.1| ribosome maturation factor rimM [Staphylococcus aureus A8115]
gi|257853781|gb|EEV76740.1| ribosome maturation factor rimM [Staphylococcus aureus A6300]
gi|257857420|gb|EEV80318.1| ribosome maturation factor rimM [Staphylococcus aureus A6224]
gi|257859755|gb|EEV82597.1| ribosome maturation factor rimM [Staphylococcus aureus A5948]
gi|257863194|gb|EEV85958.1| 16S rRNA processing protein RimM [Staphylococcus aureus A5937]
gi|259160269|gb|EEW45297.1| probable 16S rRNA processing protein [Staphylococcus aureus
930918-3]
gi|259163703|gb|EEW48258.1| probable 16S rRNA processing protein [Staphylococcus aureus D30]
gi|262075145|gb|ACY11118.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus ED98]
gi|269940731|emb|CBI49112.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282314032|gb|EFB44424.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
C101]
gi|282316747|gb|EFB47121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C427]
gi|282322083|gb|EFB52407.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M899]
gi|282325416|gb|EFB55725.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327594|gb|EFB57877.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282330849|gb|EFB60363.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590583|gb|EFB95660.1| 16S rRNA processing protein RimM [Staphylococcus aureus A10102]
gi|282594738|gb|EFB99722.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9765]
gi|282595411|gb|EFC00375.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus C160]
gi|282764723|gb|EFC04848.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8117]
gi|283790130|gb|EFC28947.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285816921|gb|ADC37408.1| 16S rRNA processing protein RimM [Staphylococcus aureus 04-02981]
gi|290920667|gb|EFD97730.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M1015]
gi|291096052|gb|EFE26313.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466952|gb|EFF09470.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M809]
gi|294825033|gb|EFG41455.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9754]
gi|294968762|gb|EFG44784.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8819]
gi|295128083|gb|EFG57717.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887360|gb|EFH26262.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297178432|gb|EFH37678.1| 16S rRNA processing protein RimM [Staphylococcus aureus A8796]
gi|297576202|gb|EFH94918.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MN8]
gi|300886443|gb|EFK81645.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751062|gb|ADL65239.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340180|gb|EFM06121.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438383|gb|ADQ77454.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829633|emb|CBX34475.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315131032|gb|EFT87016.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS03]
gi|315194127|gb|EFU24520.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198478|gb|EFU28807.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140945|gb|EFW32792.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144340|gb|EFW36106.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313908|gb|AEB88321.1| Ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus T0131]
gi|329724775|gb|EGG61280.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21189]
gi|329727338|gb|EGG63794.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21172]
gi|334274320|gb|EGL92642.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21318]
gi|334277075|gb|EGL95314.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21310]
gi|341840966|gb|EGS82438.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21235]
gi|341843591|gb|EGS84814.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21259]
gi|341858142|gb|EGS98943.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21201]
gi|341858513|gb|EGS99303.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21195]
gi|364522456|gb|AEW65206.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365165202|gb|EHM57030.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21178]
gi|365167127|gb|EHM58603.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21209]
gi|365224229|gb|EHM65494.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus VCU006]
gi|365241776|gb|EHM82511.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21340]
gi|365244962|gb|EHM85614.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21232]
gi|371969888|gb|EHO87326.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21264]
gi|371977603|gb|EHO94867.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21262]
gi|371978227|gb|EHO95477.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21272]
gi|371983018|gb|EHP00166.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21283]
gi|371984700|gb|EHP01809.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21333]
gi|374363127|gb|AEZ37232.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus VC40]
gi|374393749|gb|EHQ65053.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21342]
gi|374393825|gb|EHQ65128.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21345]
gi|374396285|gb|EHQ67526.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21343]
gi|375014554|gb|EHS08235.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-99]
gi|375015963|gb|EHS09607.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-24]
gi|375023198|gb|EHS16661.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-3]
gi|375029469|gb|EHS22796.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-88]
gi|375030120|gb|EHS23445.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-91]
gi|375037161|gb|EHS30213.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-111]
gi|375037259|gb|EHS30304.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-105]
gi|375038695|gb|EHS31656.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-122]
gi|375366097|gb|EHS70109.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370882|gb|EHS74674.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377135|gb|EHS80625.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-157]
gi|377694210|gb|EHT18575.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377694744|gb|EHT19108.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377697097|gb|EHT21452.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377703114|gb|EHT27430.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377704433|gb|EHT28742.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377705638|gb|EHT29942.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377710483|gb|EHT34721.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377714591|gb|EHT38790.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377714932|gb|EHT39130.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377719848|gb|EHT44018.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377723223|gb|EHT47348.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377725224|gb|EHT49339.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG547]
gi|377725453|gb|EHT49566.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377731204|gb|EHT55261.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377731809|gb|EHT55862.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377736144|gb|EHT60174.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377738408|gb|EHT62417.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742463|gb|EHT66448.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377744541|gb|EHT68518.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377745909|gb|EHT69884.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG290]
gi|377750208|gb|EHT74146.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377753988|gb|EHT77898.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG149]
gi|377757839|gb|EHT81727.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377760811|gb|EHT84687.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|377765474|gb|EHT89324.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377765675|gb|EHT89524.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377770235|gb|EHT93997.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC93]
gi|377770884|gb|EHT94643.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIGC128]
gi|383363519|gb|EID40851.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-M]
gi|383971818|gb|EID87880.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CO-23]
gi|385196166|emb|CCG15787.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387718610|gb|EIK06568.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387718961|gb|EIK06917.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS2]
gi|387720286|gb|EIK08198.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS1]
gi|387725620|gb|EIK13224.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS4]
gi|387727955|gb|EIK15455.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS5]
gi|387730685|gb|EIK18046.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS6]
gi|387735762|gb|EIK22872.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS8]
gi|387737440|gb|EIK24506.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS7]
gi|387737994|gb|EIK25048.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS9]
gi|387744483|gb|EIK31247.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS10]
gi|387745773|gb|EIK32523.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387747266|gb|EIK33975.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402348714|gb|EJU83693.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CM05]
gi|408423432|emb|CCJ10843.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408425422|emb|CCJ12809.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408427410|emb|CCJ14773.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408429397|emb|CCJ26562.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408431385|emb|CCJ18700.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408433379|emb|CCJ20664.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408435370|emb|CCJ22630.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|408437355|emb|CCJ24598.1| Ribosome maturation factor RimM [Staphylococcus aureus subsp.
aureus ST228]
gi|421956479|gb|EKU08808.1| 16S rRNA processing protein RimM [Staphylococcus aureus CN79]
gi|436431713|gb|ELP29066.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436507583|gb|ELP43263.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21282]
gi|443406838|gb|ELS65408.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21236]
gi|445546970|gb|ELY15246.1| 16S rRNA-processing protein RimM [Staphylococcus aureus KT/314250]
gi|445562653|gb|ELY18820.1| 16S rRNA-processing protein RimM [Staphylococcus aureus KT/Y21]
Length = 167
Score = 89.0 bits (219), Expect = 8e-15, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|325957085|ref|YP_004292497.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
gi|325333650|gb|ADZ07558.1| 16S rRNA-processing protein RimM [Lactobacillus acidophilus 30SC]
Length = 171
Score = 88.6 bits (218), Expect = 9e-15, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV + + HGL GE+ V TDFPE RF Q L +T R + + R
Sbjct: 1 MQYFDVAKILTTHGLNGEVKVNVITDFPEDRFAEG-----IQLALKADTDRILTIKKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W+L F+ ++ +++A L G L+ E +R EL +G +Y +D+ V+ +E+G+
Sbjct: 55 -PFKQFWLLQFDEVNDIDEAEKLRGQILVVSEDNRGELPEGVYYYKDIFDCDVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 114 RLGKITDIQSPGANDIWLV-------------------HEDDGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+ +++ + +GL
Sbjct: 155 SNKKVYVELMEGL 167
>gi|385813596|ref|YP_005849989.1| Ribosome maturation factor rimM [Lactobacillus helveticus H10]
gi|323466315|gb|ADX70002.1| Ribosome maturation factor rimM [Lactobacillus helveticus H10]
Length = 171
Score = 88.6 bits (218), Expect = 9e-15, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + H L GE+ V TDFPE RF LR +T R + + R
Sbjct: 1 MEYFDVARILTTHRLNGEVKVNVITDFPEERFAEGMHLSLRS-----DTNRTLTVEKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F+ I ++QA L G L+ E DR EL DG +Y +D+ V+ +ETG+
Sbjct: 55 -PFKQFWLIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +V++ + GAND+ V + + WIP + ++V VD+
Sbjct: 114 RIGKIVDIQSPGANDIWLV-------------------REDDVKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 AAKKVYVELMEGL 167
>gi|385817870|ref|YP_005854260.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL1118]
gi|327183808|gb|AEA32255.1| 16S rRNA-processing protein RimM [Lactobacillus amylovorus GRL1118]
Length = 186
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV + + HGL GE+ V TDFPE RF Q L +T R + + R
Sbjct: 16 MQYFDVAKILTTHGLNGEVKVNVITDFPEDRFAEG-----MQLALKADTDRILTIKKSR- 69
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W+L F+ ++ +++A L G L+ E +R EL +G +Y +D+ V+ +E+G+
Sbjct: 70 -PFKQFWLLQFDEVNDIDEAEKLRGQILVVSEDNRGELPEGVYYYKDIFDCDVIDEESGK 128
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 129 RLGKITDIQSPGANDIWLV-------------------HEDDGKEYWIPNIADVVKKVDV 169
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 170 PNKKVYVELMEGL 182
>gi|375008171|ref|YP_004981804.1| ribosome maturation factor rimM [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287020|gb|AEV18704.1| Ribosome maturation factor rimM [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 172
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RERDSEPIEVTVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ P G+ L E EL +GE+Y +++G VV +E GE
Sbjct: 59 THKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELAEGEYYFHEIIGCTVVTEE-GET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV + GAND+ V +DA IP+++E+V VD
Sbjct: 118 IGTVREILTPGANDVWVVQ--------------RGDGTDA-----LIPYIDEVVLRVDPA 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 QKTIIIRPMEGLLE 172
>gi|289578451|ref|YP_003477078.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|297544727|ref|YP_003677029.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528164|gb|ADD02516.1| 16S rRNA processing protein RimM [Thermoanaerobacter italicus Ab9]
gi|296842502|gb|ADH61018.1| 16S rRNA processing protein RimM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 167
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRETIREVKLIDGR 133
D+ +VG V S HG++GE+ V P T+ PE RF W+ QQ + I VK+I R
Sbjct: 3 DYYNVGKVTSAHGIKGEVKVYPLTNVPE-RFYELEYVWVFDDQQRPRKYDIEYVKIISKR 61
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
+ +GID ++A L G+ L + +LE E++ +DL+GM+V +E G
Sbjct: 62 V-------CVKLKGIDNRDEAEKLKGAFLKVDSQNALKLEKDEYFIKDLIGMKVYTEE-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ VGT+V V +GAND V VI+G E R + IP ++E+V VD
Sbjct: 114 DFVGTLVEVLQTGAND---------VYVIKGEE-----------REILIPAIKEVVKKVD 153
Query: 254 MNGREMQITPPKGL 267
++ + M + +GL
Sbjct: 154 VDNKVMVVHLLEGL 167
>gi|317508408|ref|ZP_07966078.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
gi|316253255|gb|EFV12655.1| 16S rRNA processing protein RimM [Segniliparus rugosus ATCC
BAA-974]
Length = 179
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HGL GE++V+ TD PELRF PG+ + + + ++++ REH +
Sbjct: 6 VGRIAKSHGLVGEVAVEIRTDEPELRF-APGSALAVRMPKAKAAGKTLRVVSVREHANR- 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
+++FEG+ A L G+ L+ R D P ED EFY +LVG+R+ TG +G
Sbjct: 64 -LLVSFEGVVDRTAADSLRGALLVVRSEDLPPNEDPDEFYDHELVGLRIEDHGTGAELGE 122
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ +V +S D L A GR V IPFV IV + + R
Sbjct: 123 IADVAHSAGGDWL-------------------VARVKDGREVLIPFVAAIVVEISRSDRV 163
Query: 259 MQITPPKGLLELN 271
++ P+GLLELN
Sbjct: 164 ARVALPEGLLELN 176
>gi|384135028|ref|YP_005517742.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289113|gb|AEJ43223.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 177
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 26/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR-WLRQQVLGRETIREVKLIDGREH 135
+ VG V HGL+GE+ V P TDFPE RF +PG+R WLR G E I E+++ GR+H
Sbjct: 4 YYTVGVVTKPHGLRGEVRVYPRTDFPEERF-SPGSRLWLRPP--GSEPIAELEVRSGRQH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
Q WI+ F+G + G L E L +G +Y LVG+ VV E GE
Sbjct: 61 --QNLWIVGFKGYHAISDVESWRGYELCVPEDMLHPLPEGAYYYHQLVGLEVVSDE-GEP 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + V+ GAND+ V +++ +P + +++ VD+
Sbjct: 118 LGVLAEVWTPGANDVYVVRKPGQPDLL-------------------LPAIRDVILSVDLE 158
Query: 256 GREMQITPPKGL 267
R M + GL
Sbjct: 159 ARRMTVHLLPGL 170
>gi|311030152|ref|ZP_07708242.1| 16S rRNA-processing protein RimM [Bacillus sp. m3-13]
Length = 172
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 25/193 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFP+ R+ +L + + EVK+ R H
Sbjct: 4 WFNVGKLVNTHGIKGEVRVVSRTDFPDERYKKGNLLYLF--LPNDKEPVEVKVASRRVH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +LTFEG V + G+ + E ELE+GE+Y ++VG +V+++ET E
Sbjct: 61 --KSFDLLTFEGFHNVNEVEKFKGAIIKVPEDQLGELEEGEYYFHEIVGCKVILQETMEE 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV V GAND V VI+ + G+ + IP+++++V VD+
Sbjct: 119 IGTVKEVLTPGAND---------VWVIQAKK----------GKDILIPYIDQVVKKVDVQ 159
Query: 256 GREMQITPPKGLL 268
+ + I P +GL
Sbjct: 160 EKTIIIEPLEGLF 172
>gi|423720618|ref|ZP_17694800.1| 16S rRNA processing protein rimM [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365971|gb|EID43262.1| 16S rRNA processing protein rimM [Geobacillus thermoglucosidans
TNO-09.020]
Length = 172
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ T ++ E +E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFM-----EKSQEPIEVIVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D + G+ L E EL +GE+Y +++G VV +E GE
Sbjct: 59 VHKSFDLLSFEGYDNINLVEKFKGAVLKVPESQLGELNEGEYYFHEIIGCTVVTEE-GET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV + GAND+ V +G+ IP++E+IV VD+
Sbjct: 118 VGTVSEILTPGANDVWVV-------------------KRNNGKEALIPYIEDIVKNVDVE 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 AKIITIRPMEGLLE 172
>gi|340355022|ref|ZP_08677716.1| 16S rRNA processing protein RimM [Sporosarcina newyorkensis 2681]
gi|339622819|gb|EGQ27332.1| 16S rRNA processing protein RimM [Sporosarcina newyorkensis 2681]
Length = 171
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 24/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ V +TDFP+ R+ L + +T V + R+
Sbjct: 1 MEWFNVGKIVNTHGIKGEVRVMSTTDFPDERYAIGSE--LAIFMPKSKTPIYVTVASHRK 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H +LTFEG T+ L + E + ELE+ EFY +++G RV+ ETGE
Sbjct: 59 HKNFN--LLTFEGYPTINDVEKLRDGIVKVSEKELTELEENEFYYHEIIGCRVI-TETGE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV + +GAND+ V + A G+ +IP++E++V +D+
Sbjct: 116 DIGTVTEIIETGANDVWTV-------------------TPAEGKPHYIPYIEDVVKDIDI 156
Query: 255 NGREMQITPPKGLL 268
G+ + I +GLL
Sbjct: 157 EGKVITIELMEGLL 170
>gi|365873206|ref|ZP_09412739.1| 16S rRNA processing protein RimM [Thermanaerovibrio velox DSM
12556]
gi|363983293|gb|EHM09500.1| 16S rRNA processing protein RimM [Thermanaerovibrio velox DSM
12556]
Length = 182
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR-QQVLGRE-TIREVKLIDGREH 135
V VG + HG++G + +KP TD+P+ RF + +L +V GR RE+ + + R
Sbjct: 9 VIVGRIVGTHGVKGSLKLKPLTDYPD-RFLDMDSLYLELPEVRGRRRPPRELAVQEMRFQ 67
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ +I+T EGI T+E A L G+ + DR LE+G ++ D++G++VV +TG++
Sbjct: 68 EGKDLFIVTLEGIHTMEDAEELKGALVTVAPEDRVPLEEGVYWIDDILGLQVVDHDTGDV 127
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V +G+ND+ + G L IP ++++V VD+
Sbjct: 128 LGLVEGVLPTGSNDVYEI-------------------RTPDGALKMIPAIKDVVIQVDLE 168
Query: 256 GREMQITPPKGL 267
R M++ +GL
Sbjct: 169 ARVMRVHLLEGL 180
>gi|312111700|ref|YP_003990016.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
gi|336236075|ref|YP_004588691.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216801|gb|ADP75405.1| 16S rRNA processing protein RimM [Geobacillus sp. Y4.1MC1]
gi|335362930|gb|AEH48610.1| 16S rRNA processing protein RimM [Geobacillus thermoglucosidasius
C56-YS93]
Length = 172
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ T ++ E +E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFM-----EKSQEPIEVIVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D + G+ L E EL +GE+Y +++G VV +E GE
Sbjct: 59 VHKSFDLLSFEGYDNINLVEKFKGAMLKVPESQLGELNEGEYYFHEIIGCTVVTEE-GET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV + GAND+ V +G+ IP++E+IV VD+
Sbjct: 118 VGTVSEILTPGANDVWVV-------------------KRNNGKEALIPYIEDIVKNVDVE 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 AKIITIRPMEGLLE 172
>gi|379710063|ref|YP_005265268.1| 16S rRNA-processing protein rimM [Nocardia cyriacigeorgica GUH-2]
gi|374847562|emb|CCF64632.1| 16S rRNA-processing protein rimM [Nocardia cyriacigeorgica GUH-2]
Length = 174
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 24/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF PG+ LR ++ + +RE + REH G+
Sbjct: 5 VGRVAKSHGVRGELVVEVRTDEPEERFA-PGST-LRGRLARSKEVREFTVESAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDR-PELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ G+D A L G+ L D P + EFY +L G+RV + + G ++GT
Sbjct: 62 -LLVQLAGVDDRTAADALRGTLFLVDSDDLGPSQDPDEFYDHELEGLRVELAD-GTVIGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V +S A +LL V A+D GR + IPFV IVP V +
Sbjct: 120 VTEVLHSAAGELLSV-----------------RAAD-DGREILIPFVMAIVPTVSVADGL 161
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 162 VVIDPPEGLLD 172
>gi|82750843|ref|YP_416584.1| 16S rRNA-processing protein RimM [Staphylococcus aureus RF122]
gi|282916489|ref|ZP_06324251.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283770301|ref|ZP_06343193.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
gi|418950561|ref|ZP_13502725.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-160]
gi|109893053|sp|Q2YXK2.1|RIMM_STAAB RecName: Full=Ribosome maturation factor RimM
gi|82656374|emb|CAI80792.1| 16S rRNA processing protein [Staphylococcus aureus RF122]
gi|282319929|gb|EFB50277.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus D139]
gi|283460448|gb|EFC07538.1| ribosome maturation factor rimM [Staphylococcus aureus subsp.
aureus H19]
gi|375376733|gb|EHS80252.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-160]
Length = 167
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ E+Y D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|386728922|ref|YP_006195305.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
71193]
gi|387602514|ref|YP_005734035.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ST398]
gi|404478579|ref|YP_006710009.1| 16S rRNA processing protein [Staphylococcus aureus 08BA02176]
gi|418309774|ref|ZP_12921325.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21331]
gi|418980056|ref|ZP_13527844.1| RimM [Staphylococcus aureus subsp. aureus DR10]
gi|283470452|emb|CAQ49663.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus ST398]
gi|365237897|gb|EHM78736.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21331]
gi|379992219|gb|EIA13676.1| RimM [Staphylococcus aureus subsp. aureus DR10]
gi|384230215|gb|AFH69462.1| RimM [Staphylococcus aureus subsp. aureus 71193]
gi|404440068|gb|AFR73261.1| 16S rRNA processing protein [Staphylococcus aureus 08BA02176]
Length = 167
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + L++ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLDENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|333371172|ref|ZP_08463134.1| 16S rRNA processing protein RimM [Desmospora sp. 8437]
gi|332976616|gb|EGK13457.1| 16S rRNA processing protein RimM [Desmospora sp. 8437]
Length = 173
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-RE 134
D + VG + HG++GE+ V TD+PELRF PGT Q +L ++ E + I R
Sbjct: 5 DLLTVGRIAGTHGIRGEVRVHSRTDYPELRFA-PGT----QLLLVHPSLEEGRPITVVRA 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P + W++ FE + QA P G L + E E+ FY ++VG RVV E GE
Sbjct: 60 RPHKDFWLVQFEEWTNINQAEPFKGGLLRVSREEAVEPEEDAFYLHEIVGARVVTTE-GE 118
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG + + GAND V VI D G V IPF++++V VD
Sbjct: 119 PVGVITEILQPGAND---------VWVIR---------KDGGGE-VLIPFIDDVVRKVDP 159
Query: 255 NGREMQITPPKGL 267
+ +++ I +GL
Sbjct: 160 SAKQVIIRWMEGL 172
>gi|417653259|ref|ZP_12302993.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21193]
gi|417797287|ref|ZP_12444485.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21305]
gi|418312626|ref|ZP_12924135.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21334]
gi|329733641|gb|EGG69969.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21193]
gi|334267335|gb|EGL85799.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21305]
gi|365238271|gb|EHM79108.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21334]
Length = 167
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVTNIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|416124360|ref|ZP_11595356.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
FRI909]
gi|319401470|gb|EFV89680.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
FRI909]
Length = 167
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 106/196 (54%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDG-REH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E V +D R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVDSYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINEIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IENKTIKITPMEGLLD 167
>gi|258423920|ref|ZP_05686805.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
gi|417891782|ref|ZP_12535839.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21200]
gi|418283123|ref|ZP_12895880.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21202]
gi|418308709|ref|ZP_12920315.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21194]
gi|418889031|ref|ZP_13443167.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1524]
gi|257845949|gb|EEV69978.1| 16S rRNA processing protein RimM [Staphylococcus aureus A9635]
gi|341851068|gb|EGS91997.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21200]
gi|365168720|gb|EHM60058.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21202]
gi|365237735|gb|EHM78578.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21194]
gi|377754541|gb|EHT78450.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 167
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ + + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLKYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|256849813|ref|ZP_05555244.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
gi|256713302|gb|EEU28292.1| ribosome maturation factor rimM [Lactobacillus crispatus MV-1A-US]
Length = 171
Score = 87.4 bits (215), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + ++HGL GE+ V TDFPE RF + ET + + + R
Sbjct: 1 MEYYDVARILTMHGLNGEVKVSVITDFPEDRFAIG-----MHLAIKGETSQVLTVAKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E DR EL +G +Y +D+ V+ +E+G+
Sbjct: 55 -PFKQFWLVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + +V VD+
Sbjct: 114 RLGKITDIESPGANDIWLV-------------------HEDNGKEYWIPNIASVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ANKKVYVELLEGL 167
>gi|262046942|ref|ZP_06019902.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
gi|260572924|gb|EEX29484.1| 16S rRNA processing protein RimM [Lactobacillus crispatus MV-3A-US]
Length = 171
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF ++ + T+ +
Sbjct: 1 MEYYDVARILTTHGLNGEVKVSIITDFPEDRFAIGMHLAIKGETSQVLTV-------AKS 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E DR EL +G +Y +D+ V+ +E+G+
Sbjct: 54 RPFKQFWLVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCNVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + +V VD+
Sbjct: 114 RLGKITDIESPGANDIWLV-------------------HEDNGKEYWIPNIASVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ANKKVYVELLEGL 167
>gi|227878847|ref|ZP_03996754.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
gi|227861595|gb|EEJ69207.1| 16S rRNA processing protein [Lactobacillus crispatus JV-V01]
Length = 183
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + ++HGL GE+ V TDFPE RF ++ + T+ +
Sbjct: 13 MEYYDVARILTMHGLNGEVKVSVITDFPEDRFAIGMHLAIKGETSQVLTV-------AKS 65
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E DR EL +G +Y +D+ V+ +E+G+
Sbjct: 66 RPFKQFWLVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGK 125
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + +V VD+
Sbjct: 126 RLGKITDIESPGANDIWLV-------------------HEDNGKEYWIPNIASVVKKVDV 166
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 167 ANKKVYVELLEGL 179
>gi|258511337|ref|YP_003184771.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478063|gb|ACV58382.1| 16S rRNA processing protein RimM [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 177
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 26/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR-WLRQQVLGRETIREVKLIDGREH 135
+ VG V HGL+GE+ V P TDFPE RF +PG+R WLR G E + E+++ GR+H
Sbjct: 4 YYTVGVVTKPHGLRGEVRVYPRTDFPEERF-SPGSRLWLRPP--GSEPVAELEVRSGRQH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
Q WI+ F+G + G L E L +G +Y LVG+ V+ E GE
Sbjct: 61 --QNLWIVGFKGYHAISDVESWRGYELCVPEDMLHPLPEGAYYYHQLVGLEVISDE-GEP 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + V+ GAND+ V +++ +P + +++ VD+
Sbjct: 118 LGVLAEVWTPGANDVYVVRKPGQPDLL-------------------LPAIRDVILSVDLE 158
Query: 256 GREMQITPPKGL 267
R M + GL
Sbjct: 159 ARRMTVHLLPGL 170
>gi|418411659|ref|ZP_12984925.1| ribosome maturation factor rimM [Staphylococcus epidermidis
BVS058A4]
gi|410891242|gb|EKS39039.1| ribosome maturation factor rimM [Staphylococcus epidermidis
BVS058A4]
Length = 167
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E+ + R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVASYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINEIEHLKGDYIY-QERDHQDIELGEYEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IETKTIKITPMEGLLD 167
>gi|295693162|ref|YP_003601772.1| ribosome maturation factor rimm [Lactobacillus crispatus ST1]
gi|295031268|emb|CBL50747.1| Ribosome maturation factor rimM [Lactobacillus crispatus ST1]
Length = 171
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF + ET + + + R
Sbjct: 1 MEYYDVARILTTHGLNGEVKVSVITDFPEDRFAIG-----MHLAIKGETSQVLTVAKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E DR EL +G +Y +D+ V+ +E+G+
Sbjct: 55 -PFKQFWLVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + +V VD+
Sbjct: 114 RLGKITDIESPGANDIWLV-------------------HEDNGKEYWIPNIASVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ANKKVYVELLEGL 167
>gi|418615157|ref|ZP_13178106.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU118]
gi|420199025|ref|ZP_14704709.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM031]
gi|374818231|gb|EHR82399.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU118]
gi|394272711|gb|EJE17161.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM031]
Length = 167
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDG-REH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E V +D R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVDSYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINDIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IENKTIKITPMEGLLD 167
>gi|256843366|ref|ZP_05548854.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|293381188|ref|ZP_06627196.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
gi|423318444|ref|ZP_17296321.1| ribosome maturation factor rimM [Lactobacillus crispatus FB049-03]
gi|423321924|ref|ZP_17299795.1| ribosome maturation factor rimM [Lactobacillus crispatus FB077-07]
gi|256614786|gb|EEU19987.1| 16S rRNA processing protein RimM [Lactobacillus crispatus
125-2-CHN]
gi|290922228|gb|EFD99222.1| 16S rRNA processing protein RimM [Lactobacillus crispatus 214-1]
gi|405591378|gb|EKB64880.1| ribosome maturation factor rimM [Lactobacillus crispatus FB077-07]
gi|405595569|gb|EKB68949.1| ribosome maturation factor rimM [Lactobacillus crispatus FB049-03]
Length = 171
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF + ET + + + R
Sbjct: 1 MEYYDVARILTTHGLNGEVKVSIITDFPEDRFAIG-----MHLAIKGETSQVLTVAKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E DR EL +G +Y +D+ V+ +E+G+
Sbjct: 55 -PFKQFWLVQFAEITDIDQAEKLKGKILVVSEADRGELPEGVYYYKDIFDCDVIDEESGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + +V VD+
Sbjct: 114 RLGKITDIESPGANDIWLV-------------------HEDNGKEYWIPNIASVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ANKKVYVELLEGL 167
>gi|288553086|ref|YP_003425021.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
gi|288544246|gb|ADC48129.1| 16S rRNA processing protein [Bacillus pseudofirmus OF4]
Length = 173
Score = 87.0 bits (214), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + + HG++GEI V STDFP+ R+ W ++ T + + ++
Sbjct: 3 DLLKVGKIVNTHGVRGEIRVISSTDFPDERYAKGCELW----IVDANTKKHISVVVANHR 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +LTFEG D++ Q GSTL + +L++GEFY +++G V E
Sbjct: 59 VHKNFDLLTFEGYDSINQVEEFKGSTLYVSKDQLSDLDEGEFYYHEIIGCEVYTTNN-EH 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + +GAND V VI + G+ + IP++E++V +++
Sbjct: 118 LGQIKEIIETGAND---------VWVIRRA---------GGGKDILIPYIEDVVIEINLE 159
Query: 256 GREMQITPPKGLLE 269
++ I P +GL+E
Sbjct: 160 ENKVIIDPMEGLVE 173
>gi|418325820|ref|ZP_12937023.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU071]
gi|365227566|gb|EHM68759.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU071]
Length = 167
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E+ + R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVASYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLKFEGINNINEIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IETKTIKITPMEGLLD 167
>gi|167037686|ref|YP_001665264.1| 16S rRNA-processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040347|ref|YP_001663332.1| 16S rRNA-processing protein RimM [Thermoanaerobacter sp. X514]
gi|256750720|ref|ZP_05491605.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914431|ref|ZP_07131747.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307724333|ref|YP_003904084.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|320116101|ref|YP_004186260.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326389500|ref|ZP_08211067.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
gi|392940889|ref|ZP_10306533.1| 16S rRNA processing protein RimM [Thermoanaerobacter siderophilus
SR4]
gi|238687582|sp|B0K1U8.1|RIMM_THEPX RecName: Full=Ribosome maturation factor RimM
gi|238687661|sp|B0K9W5.1|RIMM_THEP3 RecName: Full=Ribosome maturation factor RimM
gi|166854587|gb|ABY92996.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X514]
gi|166856520|gb|ABY94928.1| 16S rRNA processing protein RimM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750303|gb|EEU63322.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889366|gb|EFK84512.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X561]
gi|307581394|gb|ADN54793.1| 16S rRNA processing protein RimM [Thermoanaerobacter sp. X513]
gi|319929192|gb|ADV79877.1| 16S rRNA processing protein RimM [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|325994505|gb|EGD52930.1| 16S rRNA processing protein RimM [Thermoanaerobacter ethanolicus JW
200]
gi|392292639|gb|EIW01083.1| 16S rRNA processing protein RimM [Thermoanaerobacter siderophilus
SR4]
Length = 167
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRETIREVKLIDGR 133
D+ +VG V S HG++GE+ V P T+ PE RF W+ QQ + I VK+I
Sbjct: 3 DYYNVGKVTSAHGIKGEVKVYPLTNVPE-RFYDLEYVWIFDDQQRPHKYDIEYVKII--- 58
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K + +GIDT A L G+ L + ELE+ E++ +DLVGM+V +E G
Sbjct: 59 ----SKGVCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEE-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+GT+V V +GAND V VI+ E R + IP ++E+V VD
Sbjct: 114 SFLGTLVEVLKTGAND---------VYVIKTEE-----------REILIPAIKEVVKKVD 153
Query: 254 MNGREMQITPPKGL 267
++ + M + +GL
Sbjct: 154 VDNKVMVVHLLEGL 167
>gi|27467832|ref|NP_764469.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis ATCC
12228]
gi|251810669|ref|ZP_04825142.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876329|ref|ZP_06285196.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|293366796|ref|ZP_06613472.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417647433|ref|ZP_12297273.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU144]
gi|417656672|ref|ZP_12306355.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU028]
gi|417658987|ref|ZP_12308600.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU045]
gi|417909777|ref|ZP_12553510.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU037]
gi|417910858|ref|ZP_12554574.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU105]
gi|417913341|ref|ZP_12557008.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU109]
gi|418605419|ref|ZP_13168744.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU041]
gi|418606264|ref|ZP_13169553.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU057]
gi|418609957|ref|ZP_13173091.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU065]
gi|418616531|ref|ZP_13179455.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU120]
gi|418622030|ref|ZP_13184786.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU123]
gi|418624505|ref|ZP_13187180.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU125]
gi|418664778|ref|ZP_13226244.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU081]
gi|419768092|ref|ZP_14294229.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-250]
gi|419770887|ref|ZP_14296949.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-K]
gi|420163423|ref|ZP_14670170.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM095]
gi|420165225|ref|ZP_14671929.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM088]
gi|420167595|ref|ZP_14674247.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM087]
gi|420169782|ref|ZP_14676360.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM070]
gi|420172761|ref|ZP_14679259.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM067]
gi|420182909|ref|ZP_14689042.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM049]
gi|420187556|ref|ZP_14693576.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM039]
gi|420194023|ref|ZP_14699852.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM021]
gi|420197130|ref|ZP_14702854.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM020]
gi|420202047|ref|ZP_14707642.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM018]
gi|420206441|ref|ZP_14711951.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM008]
gi|420209482|ref|ZP_14714919.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM003]
gi|420211870|ref|ZP_14717226.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM001]
gi|420214281|ref|ZP_14719560.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05005]
gi|420216111|ref|ZP_14721333.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05001]
gi|420220020|ref|ZP_14725010.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH04008]
gi|420221969|ref|ZP_14726894.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH08001]
gi|420224832|ref|ZP_14729670.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH06004]
gi|420227030|ref|ZP_14731803.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05003]
gi|420229352|ref|ZP_14734058.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH04003]
gi|420231711|ref|ZP_14736356.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH051668]
gi|421607259|ref|ZP_16048505.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis
AU12-03]
gi|33301521|sp|Q8CPH7.1|RIMM_STAES RecName: Full=Ribosome maturation factor RimM
gi|27315377|gb|AAO04511.1|AE016747_8 rimM protein [Staphylococcus epidermidis ATCC 12228]
gi|251805829|gb|EES58486.1| 16S rRNA processing protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295354|gb|EFA87881.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis SK135]
gi|291319097|gb|EFE59467.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329724354|gb|EGG60866.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU144]
gi|329736333|gb|EGG72605.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU028]
gi|329736626|gb|EGG72892.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU045]
gi|341652386|gb|EGS76174.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU037]
gi|341655046|gb|EGS78782.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU105]
gi|341655623|gb|EGS79347.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU109]
gi|374402516|gb|EHQ73541.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU041]
gi|374406293|gb|EHQ77196.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU065]
gi|374408709|gb|EHQ79519.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU057]
gi|374410224|gb|EHQ80985.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU081]
gi|374820609|gb|EHR84685.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU120]
gi|374827405|gb|EHR91267.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU123]
gi|374827734|gb|EHR91595.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU125]
gi|383361013|gb|EID38396.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-250]
gi|383362436|gb|EID39788.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus IS-K]
gi|394235112|gb|EJD80686.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM095]
gi|394236392|gb|EJD81926.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM088]
gi|394237623|gb|EJD83109.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM087]
gi|394241438|gb|EJD86852.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM067]
gi|394243082|gb|EJD88456.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM070]
gi|394249372|gb|EJD94585.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM049]
gi|394255998|gb|EJE00934.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM039]
gi|394265937|gb|EJE10583.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM020]
gi|394266721|gb|EJE11346.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM021]
gi|394270020|gb|EJE14543.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM018]
gi|394278280|gb|EJE22597.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM008]
gi|394278929|gb|EJE23241.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM003]
gi|394280380|gb|EJE24661.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM001]
gi|394283646|gb|EJE27811.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05005]
gi|394287027|gb|EJE31001.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH04008]
gi|394290000|gb|EJE33870.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH08001]
gi|394292561|gb|EJE36303.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05001]
gi|394294235|gb|EJE37921.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH06004]
gi|394297531|gb|EJE41128.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH05003]
gi|394299118|gb|EJE42669.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH04003]
gi|394302253|gb|EJE45701.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH051668]
gi|406657051|gb|EKC83444.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis
AU12-03]
Length = 167
Score = 86.7 bits (213), Expect = 4e-14, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E+ + R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVASYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINEIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IETKTIKITPMEGLLD 167
>gi|452950253|gb|EME55717.1| 16S rRNA-processing protein RimM [Amycolatopsis decaplanina DSM
44594]
Length = 170
Score = 86.7 bits (213), Expect = 4e-14, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE++V TD PE RF + L + R++ + REH G
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPEQRFAVGSAVTTK---LRDGSSRDLTIAAAREHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ L+A P ED EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFEEVLTRDVAETLRGALLIADTSALPPTEDPDEFYDHELEGLRAELAD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+ + +S A +LL V + GR V +PFV+ IVP VD+ G
Sbjct: 117 GKVLEIVHSPAGELLSV--------------------EHDGREVLVPFVKAIVPAVDVAG 156
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 157 GRVVLDPPEGLLD 169
>gi|284024232|ref|ZP_06378630.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus 132]
Length = 167
Score = 86.7 bits (213), Expect = 4e-14, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ I P +GLL+
Sbjct: 155 KKIIIMPMEGLLD 167
>gi|403234821|ref|ZP_10913407.1| 16S rRNA-processing protein RimM [Bacillus sp. 10403023]
Length = 170
Score = 86.7 bits (213), Expect = 4e-14, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HG++GE+ + TDFPE R+ T L V E I EV + R H
Sbjct: 6 NVGKIVNTHGIKGEVRIISRTDFPEERYKIGNT--LHIFVSDNEPI-EVTVQSHRTHKNF 62
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++TFEG D V PL G+ + E EL++GE+Y +++G V+ +E GE +GT
Sbjct: 63 D--LVTFEGYDNVNDVEPLKGALVKVHESQLGELDEGEYYFHEIIGCTVITEE-GEELGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ + GAND V V++G+ SG+ + IPF+++IV +++ +
Sbjct: 120 IREILTPGAND---------VWVVKGT----------SGKEILIPFIDDIVKGINVEEKT 160
Query: 259 MQITPPKGLL 268
+ I +GL+
Sbjct: 161 ITIHLMEGLI 170
>gi|430750339|ref|YP_007213247.1| 16S rRNA processing protein RimM [Thermobacillus composti KWC4]
gi|430734304|gb|AGA58249.1| 16S rRNA processing protein RimM [Thermobacillus composti KWC4]
Length = 172
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 24/192 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG + + HG++GE+ V PSTDFP RF PG+R L EV++ REH
Sbjct: 5 WLKVGRLVNTHGIRGEVKVLPSTDFPGERFA-PGSR-LTLHAPDSSAAVEVEVASAREHK 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G +I+ F+ D + Q P G T+ R L +GE+Y D++G VV +E GE +
Sbjct: 63 GL--YIVKFKQYDNINQVLPYKGWTIKVPASQRVPLAEGEYYFHDIIGCTVVTEE-GEEL 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + GAND V V+E GR V IP++ ++V VD+
Sbjct: 120 GRISEILRPGAND---------VWVVE----------RPKGRPVLIPYIADVVLDVDVEA 160
Query: 257 REMQITPPKGLL 268
+ + I +GL+
Sbjct: 161 KRVTIHLMEGLI 172
>gi|57866698|ref|YP_188388.1| 16S rRNA-processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242242522|ref|ZP_04796967.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
gi|418612979|ref|ZP_13176000.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU117]
gi|418626735|ref|ZP_13189331.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU126]
gi|418634031|ref|ZP_13196429.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU129]
gi|420174992|ref|ZP_14681438.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM061]
gi|420177371|ref|ZP_14683707.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM057]
gi|420179854|ref|ZP_14686130.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM053]
gi|420189840|ref|ZP_14695799.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM037]
gi|420204161|ref|ZP_14709721.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM015]
gi|420234399|ref|ZP_14738962.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH051475]
gi|67461258|sp|Q5HPV2.1|RIMM_STAEQ RecName: Full=Ribosome maturation factor RimM
gi|57637356|gb|AAW54144.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis RP62A]
gi|242234030|gb|EES36342.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
W23144]
gi|374817289|gb|EHR81474.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU117]
gi|374831279|gb|EHR95021.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU126]
gi|374838023|gb|EHS01580.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU129]
gi|394244525|gb|EJD89867.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM061]
gi|394247755|gb|EJD92997.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM057]
gi|394252332|gb|EJD97369.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM053]
gi|394259955|gb|EJE04781.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM037]
gi|394274175|gb|EJE18600.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM015]
gi|394304202|gb|EJE47609.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIH051475]
Length = 167
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDG-REH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E V +D R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVDSYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINDIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V +++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWIVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IENKTIKITPMEGLLD 167
>gi|242373531|ref|ZP_04819105.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
gi|242348894|gb|EES40496.1| 16S rRNA processing protein [Staphylococcus epidermidis M23864:W1]
Length = 167
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF RF PG + V + + R H G
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTATRF-QPGENLI---VKHNNNDIQYTIASYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + L G L R+ + EL++ E+Y D++G V + +
Sbjct: 59 FH--MLKFEGINNINDIEHLKGDYLYQERDHEDIELDEHEYYYSDIIGC-TVFDDNNTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++E++V +D+ G
Sbjct: 116 GRVINIFETGAND---------VWVVKGDKE------------YLIPYIEDVVKDIDVEG 154
Query: 257 REMQITPPKGLLE 269
+ ++ITP +GLL+
Sbjct: 155 KSIRITPMEGLLD 167
>gi|418629017|ref|ZP_13191533.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU127]
gi|374835011|gb|EHR98642.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU127]
Length = 167
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E+ + R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVASYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINEIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKEID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IETKTIKITPMEGLLD 167
>gi|395243014|ref|ZP_10420002.1| Ribosome maturation factor rimM [Lactobacillus hominis CRBIP
24.179]
gi|394484834|emb|CCI81010.1| Ribosome maturation factor rimM [Lactobacillus hominis CRBIP
24.179]
Length = 175
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + + HGL+GE+ V P TDF RF ++ ET +V + R
Sbjct: 3 EYFEVGKILTTHGLKGEVKVNPITDFINERFKVGSKLYIGADNENIET--KVTVASSRM- 59
Query: 136 PGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++L FE I +++A+ ++ L E DR EL +G +Y +D++ + V ETGE
Sbjct: 60 --QKQFVLVCFEEITDIDEAQKILKKDLFVAEQDRDELPEGSYYFKDILELPVFDSETGE 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +VN+ GAND+ + G+ WIP + +V VD+
Sbjct: 118 KLGQLVNIETPGANDIWEI-------------------KPERGKSFWIPNIASVVKKVDL 158
Query: 255 NGREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 159 EQKRIEVTLLEGLRDEN 175
>gi|366085826|ref|ZP_09452311.1| 16S rRNA-processing protein RimM [Lactobacillus zeae KCTC 3804]
Length = 172
Score = 85.9 bits (211), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ D+G + + HG++GE+ V +TDFPE RF T ++ TI+ V REH
Sbjct: 3 EYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFQVGKTVYVATSPKTALTIQSV-----REH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+G + Q P G L + LE G +Y +D++G+ V+ E G+
Sbjct: 58 KGLT--MLTFKGYTDINQVLPFKGKKLQVTDAALQPLEAGSYYYKDIIGLTVI-DEHGQT 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND V VI + ++ + +PF++ +V +D+
Sbjct: 115 LGKVSEILSPGPND---------VWVIPRAGKSE----------ILLPFLKSVVQSIDLE 155
Query: 256 GREMQITPPKGLLE 269
+E + P+GL++
Sbjct: 156 RKEAHVIVPEGLID 169
>gi|392415774|ref|YP_006452379.1| 16S rRNA processing protein RimM [Mycobacterium chubuense NBB4]
gi|390615550|gb|AFM16700.1| 16S rRNA processing protein RimM [Mycobacterium chubuense NBB4]
Length = 172
Score = 85.9 bits (211), Expect = 7e-14, Method: Composition-based stats.
Identities = 69/197 (35%), Positives = 93/197 (47%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V +G V HG+ GE+ V+ TD PE RF GT R G E RE + R
Sbjct: 1 MDLV-IGRVVKAHGVTGEVVVEIRTDDPENRFAPGGTLRGRAPRGGAE--REYTVESVRA 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ F G+ + A L G+ L G P ++D EFY L GM V + G
Sbjct: 58 HGGR--LLMRFAGVADRDSADRLRGTVFLVDSGALPPIDDPDEFYDHQLEGMAVSTVD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VGTV V ++ A +LL V DA R V +PFV IV V
Sbjct: 115 RRVGTVSEVLHTAAGELLAV-------------------RDAEDREVLVPFVSAIVVSVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ + ++I PP+GLLEL
Sbjct: 156 LAEKAIEIDPPEGLLEL 172
>gi|398940598|ref|ZP_10669340.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM41(2012)]
gi|398162564|gb|EJM50753.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM41(2012)]
Length = 178
Score = 85.5 bits (210), Expect = 8e-14, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y +L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYELEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|418327693|ref|ZP_12938835.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
14.1.R1.SE]
gi|365232723|gb|EHM73709.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
14.1.R1.SE]
Length = 167
Score = 85.5 bits (210), Expect = 8e-14, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDG-REH 135
V+VG + + HG++GE+ +K ++DF E RF PG +Q+L + E V +D R H
Sbjct: 3 VEVGQIVNTHGIKGEVKMKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVDSYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FEGI+ + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLRFEGINNINDIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V V++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWVVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IENKTIKITPMEGLLD 167
>gi|329770416|ref|ZP_08261798.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
gi|328836539|gb|EGF86199.1| 16S rRNA processing protein RimM [Gemella sanguinis M325]
Length = 169
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 25/190 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + H L+GE+ V STDF E RF G++ L + G + I EV + R H +
Sbjct: 5 VGKIVNTHSLRGEVKVISSTDFEEERFK-KGSKLLITR--GNQVIEEVVVESYRSH--KN 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
S ++ FEGID++ +A L + ELE+ EFY +++G R V E L+G V
Sbjct: 60 SLLVKFEGIDSINEAEKFKNLQLKVDSENISELEENEFYFHEIIGCR-VFDENNMLLGEV 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + GAND+ VI+G +G+ + IP++ ++V VD+ +++
Sbjct: 119 VEILTPGANDVW---------VIKGE----------NGKEILIPYIVDVVKNVDVQNKKI 159
Query: 260 QITPPKGLLE 269
I +GL++
Sbjct: 160 DIEIMEGLID 169
>gi|239636282|ref|ZP_04677284.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
gi|239597637|gb|EEQ80132.1| 16S rRNA processing protein RimM [Staphylococcus warneri L37603]
Length = 167
Score = 85.5 bits (210), Expect = 9e-14, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG---RETIREVKLIDGRE 134
V+VG + + HG++GE+ VK ++DF + RF PG +VL + +E+ + R
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRF-QPG------EVLTAKLNQIEKELTVTSYRT 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G +L FEGID + L G+ L R+ + ELE+ EFY D++G V E
Sbjct: 56 HKGFH--MLKFEGIDNINDIEYLKGAVLYQERDHEDIELEENEFYYSDIIGCTVFDDEQ- 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ +G + ++F +GAND V V++G +E IP++ ++V VD
Sbjct: 113 QPIGRITSIFETGAND---------VWVVKGDKE------------YLIPYIADVVKDVD 151
Query: 254 MNGREMQITPPKGLLE 269
+ + + ITP +GLL+
Sbjct: 152 VENKTVIITPMEGLLD 167
>gi|317152479|ref|YP_004120527.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
gi|316942730|gb|ADU61781.1| 16S rRNA processing protein RimM [Desulfovibrio aespoeensis Aspo-2]
Length = 199
Score = 85.5 bits (210), Expect = 9e-14, Method: Composition-based stats.
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 30/217 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI +K D P L F +L+ + G+ I + REH G
Sbjct: 9 VGGVVRPHGIRGEICIKSHADSPSL-FGLVAALYLQDK--GKPPIPHA-VRSWREHKGMV 64
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+LT +G+D ++A L G +L RE D PEL++GE Y L+G RV + + G VG +
Sbjct: 65 --LLTLDGVDDRDKAEALRGREVLVREADLPELDEGEHYLYQLMGCRVTLAD-GTDVGVL 121
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ F +G D ++ + +G + +P V E V VD++ +
Sbjct: 122 EHFFETGEQDTWVII-------------------NEAGTEIMLPAVPEFVLDVDLDAGVI 162
Query: 260 QITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296
I PP GLL+L L + K R ER K KR
Sbjct: 163 VIDPPAGLLDLYLNPEPPRAKPAR----PERAKSGKR 195
>gi|451334983|ref|ZP_21905553.1| 16S rRNA processing protein RimM [Amycolatopsis azurea DSM 43854]
gi|449422522|gb|EMD27896.1| 16S rRNA processing protein RimM [Amycolatopsis azurea DSM 43854]
Length = 170
Score = 85.5 bits (210), Expect = 9e-14, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE++V TD PE RF + L + R + + REH G
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPEQRFAVGSAVTTK---LRDGSSRNLTIAAAREHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ L+A P ED EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFEEVLTRDVAETLRGALLIADTSTLPPTEDPDEFYDHELEGLRAELAD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+ + +S A +LL + + GR V +PFV+ IVP VD+ G
Sbjct: 117 GKVLEIVHSPAGELLSI--------------------EHDGREVLVPFVKAIVPAVDVAG 156
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 157 GRVVLDPPEGLLD 169
>gi|384549994|ref|YP_005739246.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302332843|gb|ADL23036.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 167
Score = 85.5 bits (210), Expect = 9e-14, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ E+Y D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ I P +GLL+
Sbjct: 155 KKIIIKPMEGLLD 167
>gi|414160542|ref|ZP_11416808.1| ribosome maturation factor rimM [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878062|gb|EKS25951.1| ribosome maturation factor rimM [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 167
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 30/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF + RF L + G E + + R H G
Sbjct: 3 VEVGKIVNTHGIKGEVRVKSNSDFTDTRFQPGEVLTLNHK--GEEI--ALTVASYRMHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + G L R+ + EL++ EFY D++G V ET +
Sbjct: 59 FH--MLTFEGINNINDVEHFKGDILTQERDHEAIELDEHEFYYSDIIGCTVFDGETP--I 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +F +GAND V V++G +E IP++ ++V VD++G
Sbjct: 115 GRVKEIFETGAND---------VWVVQGDKE------------YLIPYIADVVQEVDVSG 153
Query: 257 REMQITPPKGLLE 269
R +QITP +G+ +
Sbjct: 154 RRIQITPLEGMFD 166
>gi|49483402|ref|YP_040626.1| 16S rRNA-processing protein RimM [Staphylococcus aureus subsp.
aureus MRSA252]
gi|56749570|sp|Q6GHJ6.1|RIMM_STAAR RecName: Full=Ribosome maturation factor RimM
gi|49241531|emb|CAG40217.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 167
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+ S+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKESKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|375142881|ref|YP_005003530.1| 16S rRNA processing protein RimM [Mycobacterium rhodesiae NBB3]
gi|359823502|gb|AEV76315.1| 16S rRNA processing protein RimM [Mycobacterium rhodesiae NBB3]
Length = 172
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 95/197 (48%), Gaps = 27/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V TD P++RF PG LR + G T R + R
Sbjct: 1 MDLV-VGRVVKAHGITGEVVVDVRTDDPDIRFA-PGAD-LRGRARG-GTERRFVVESARP 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ +G+ A L G+ L D P +ED EFY L G+RVV + G
Sbjct: 57 HGGR--LLVRLDGVADRAGADALRGTLFLVDSSDLPPIEDPDEFYDHQLEGLRVVTTQ-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
LVG V V ++ A +LL S + +G V +PFV IV V
Sbjct: 114 RLVGNVAEVLHTAAGELL-------------------SVTSETGAEVLVPFVGAIVTSVS 154
Query: 254 MNGREMQITPPKGLLEL 270
+ + ++I PP+GLL+L
Sbjct: 155 LADQTIEIDPPEGLLDL 171
>gi|296394373|ref|YP_003659257.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
gi|296181520|gb|ADG98426.1| 16S rRNA processing protein RimM [Segniliparus rotundus DSM 44985]
Length = 171
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 23/192 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HGL GE++V+ TD PE RF PG+ L + ++ + + ++ REH
Sbjct: 2 VGRIAKSHGLTGEVAVEIRTDDPERRF-APGSTLLLRMPKAKQADKALHVLSAREHASH- 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++TF + A L G+ L+ R D P ED EFY +LVG+R+V + G +G
Sbjct: 60 -LLVTFAEVMDRAAADSLRGALLVVRTEDLPPSEDPDEFYDHELVGLRIVDRAGGGELGE 118
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V +S D L V +EG GR V +PFV IV V + +
Sbjct: 119 VADVVHSAGGDWL-------VARVEG------------GREVLVPFVAAIVVEVSLAEKT 159
Query: 259 MQITPPKGLLEL 270
+ P+GLL+L
Sbjct: 160 AWVELPEGLLDL 171
>gi|395649937|ref|ZP_10437787.1| 16S rRNA-processing protein RimM [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 178
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|407647408|ref|YP_006811167.1| 16S rRNA-processing protein RimM [Nocardia brasiliensis ATCC
700358]
gi|407310292|gb|AFU04193.1| 16S rRNA-processing protein RimM [Nocardia brasiliensis ATCC
700358]
Length = 174
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD P+ RF PG+ LR ++ + +RE + REH G+
Sbjct: 5 VGRVAKSHGVRGELVVEIRTDEPQARFA-PGST-LRGRLARSKEVREFTVESAREHSGR- 61
Query: 140 SWILTF-EGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVG 197
+L F +G+ E A L G + D P D E+Y +L G+ V + + +VG
Sbjct: 62 --LLVFLDGVSGREAADALRGMLFVVDSADLPPSADPDEYYDHELEGLTVQLTDE-TVVG 118
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV V +S A +LL V + A GR + IPFV IVP V + R
Sbjct: 119 TVREVLHSAAGELLSVR------------------AAADGREILIPFVTAIVPTVSLADR 160
Query: 258 EMQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 161 LIVIDPPEGLLD 172
>gi|295425196|ref|ZP_06817899.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
gi|295064972|gb|EFG55877.1| 16S rRNA processing protein RimM [Lactobacillus amylolyticus DSM
11664]
Length = 185
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F +V + + HGL GE+ V TDFPE RF++ G++ L + RE+ + GR
Sbjct: 15 MQFYNVAKILTTHGLDGEVKVALITDFPEQRFSS-GSK----LALKDDHERELTVKSGR- 68
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F I ++QA L G L+ E ++ EL +G +Y RD++ V+ + GE
Sbjct: 69 -PFKQFWLVKFNEITDIDQAERLRGKILVVSEENQQELPEGVYYYRDILNCDVIDNQNGE 127
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
+G +V++ + GAND+ V + SG WIP++
Sbjct: 128 FLGKIVDIQSPGANDVWLV-------------------QEDSGNEYWIPYI 159
>gi|295396052|ref|ZP_06806236.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
gi|294971140|gb|EFG47031.1| 16S rRNA processing protein RimM [Brevibacterium mcbrellneri ATCC
49030]
Length = 165
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 30/184 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HG++GE++V+ TD P+ RFT PG + +G T L R H + +LTF+
Sbjct: 12 HGIRGEMTVEVRTDDPDERFT-PGATFGTDPDIGTLT-----LTRARWH--RDRLMLTFD 63
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSG 206
+ +A + +TL+ + + ED +Y DLVG VV +G ++GTV V
Sbjct: 64 EVPDRNRAEE-IRNTLITVDVSETDDEDA-WYIDDLVGAEVV--HSGSVIGTVSAVTPGA 119
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKG 266
A DL+HV E A S GR V IPFVEEIVP+VD++ ++I PP G
Sbjct: 120 AQDLIHV------------ELADS------GREVMIPFVEEIVPVVDLDNNRVEIDPPAG 161
Query: 267 LLEL 270
LL++
Sbjct: 162 LLDM 165
>gi|398851970|ref|ZP_10608643.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM80]
gi|398245518|gb|EJN31036.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM80]
Length = 178
Score = 84.7 bits (208), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G V ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKVDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|365904201|ref|ZP_09441960.1| 16S rRNA-processing protein RimM [Lactobacillus versmoldensis KCTC
3814]
Length = 171
Score = 84.7 bits (208), Expect = 2e-13, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V TDFP+ RF+ +L+ +E + R+H K
Sbjct: 8 VGKIVNTHGIKGEVRVIAITDFPQERFSAGSKLFLKTN----NGTKEFTIESSRKH---K 60
Query: 140 SW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
S+ +L F+G D + + L + +PEL DGEF ++G++VV ++ GE +GT
Sbjct: 61 SFTLLKFKGYDNINDVEQYKNAELFTTDEVKPELADGEFMYNQIIGLKVVDQQLGE-IGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V + GAND+ V S D V +P+++++V VD++ +
Sbjct: 120 VTEIMELGANDVWVV---------------KSPKYDE----VLVPYIKDVVKKVDLDKKT 160
Query: 259 MQITPPKGLLE 269
+Q+ P GL++
Sbjct: 161 IQVDLPDGLID 171
>gi|398907369|ref|ZP_10653818.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM50]
gi|398171735|gb|EJM59632.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM50]
Length = 178
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|398994636|ref|ZP_10697535.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM21]
gi|398131957|gb|EJM21253.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM21]
Length = 178
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|312962852|ref|ZP_07777339.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
gi|387895440|ref|YP_006325737.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens A506]
gi|388467739|ref|ZP_10141949.1| 16S rRNA processing protein RimM [Pseudomonas synxantha BG33R]
gi|395500459|ref|ZP_10432038.1| 16S rRNA-processing protein RimM [Pseudomonas sp. PAMC 25886]
gi|395798976|ref|ZP_10478258.1| 16S rRNA-processing protein RimM [Pseudomonas sp. Ag1]
gi|421138825|ref|ZP_15598877.1| 16S rRNA-processing protein [Pseudomonas fluorescens BBc6R8]
gi|423693399|ref|ZP_17667919.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens SS101]
gi|311282879|gb|EFQ61473.1| Ribosome maturation factor [Pseudomonas fluorescens WH6]
gi|387160887|gb|AFJ56086.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens A506]
gi|387998480|gb|EIK59809.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens SS101]
gi|388011319|gb|EIK72506.1| 16S rRNA processing protein RimM [Pseudomonas synxantha BG33R]
gi|395336663|gb|EJF68522.1| 16S rRNA-processing protein RimM [Pseudomonas sp. Ag1]
gi|404509968|gb|EKA23886.1| 16S rRNA-processing protein [Pseudomonas fluorescens BBc6R8]
Length = 178
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|383821050|ref|ZP_09976301.1| 16S rRNA-processing protein RimM [Mycobacterium phlei RIVM601174]
gi|383334081|gb|EID12524.1| 16S rRNA-processing protein RimM [Mycobacterium phlei RIVM601174]
Length = 174
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 25/197 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V TD P+ RF PG+ + G R+ + R
Sbjct: 1 MDLV-VGRVVKAHGITGEVVVDVRTDDPDARFA-PGSVLRGRPGKGGGAARDFTVTSARP 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ EG+ A L G+ + D P ++D EFY L G+RVV + G
Sbjct: 59 HGGR--LLVRLEGVTDRNGADALRGTLFIVDSEDLPPIDDPDEFYDHQLEGLRVVTTD-G 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
LVG V V ++ A +LL SV GSE V +PFV IV V
Sbjct: 116 RLVGNVAEVLHTAAGELL------SVTTETGSE-------------VLVPFVSAIVLSVS 156
Query: 254 MNGREMQITPPKGLLEL 270
+ + ++I PP GLL++
Sbjct: 157 LADQTIEIDPPDGLLDM 173
>gi|319892248|ref|YP_004149123.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|386319484|ref|YP_006015647.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
ED99]
gi|317161944|gb|ADV05487.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
HKU10-03]
gi|323464655|gb|ADX76808.1| 16S rRNA processing protein RimM [Staphylococcus pseudintermedius
ED99]
Length = 167
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 30/192 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ V+ +DF E+RF PG L+ + G+ + VK R H G
Sbjct: 3 VEVGKIVNTHGIKGEVKVQSHSDFTEIRF-QPG-EVLQAEYQGQTLLLTVK--SHRMHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEG + L G+ L R+ + EL++ EFY D++G V + +
Sbjct: 59 LH--MLTFEGYTNINDIEHLKGTHLYQERDHEAIELDEHEFYYSDIIGCTVF--DGDRPI 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +F +GAND V V++G +E IP++ ++V VD+ G
Sbjct: 115 GRVTEIFETGAND---------VWVVKGDKEH------------LIPYIADVVKEVDIEG 153
Query: 257 REMQITPPKGLL 268
R + ITP +GLL
Sbjct: 154 RRIVITPLEGLL 165
>gi|418005308|ref|ZP_12645303.1| RimM family 16S rRNA processing protein [Lactobacillus casei UW1]
gi|410547237|gb|EKQ21474.1| RimM family 16S rRNA processing protein [Lactobacillus casei UW1]
Length = 172
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+ D+G + + HG++GE+ V +TDFP RF T ++ TI+ V REH
Sbjct: 3 DYYDIGTIVNTHGIRGEVRVLVTTDFPADRFKVGNTVYVATSPKTALTIQSV-----REH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+ + Q P G L E L++G +Y +D++G+ V+ E G+
Sbjct: 58 KGLT--LLTFKDYTDINQVLPFKGKKLQVTETALQPLDEGSYYYKDIIGLTVI-DEQGQT 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND+ + S SD + +PF++ +V +D++
Sbjct: 115 LGKVNEILSPGPNDVWVI--------------PRSGKSD-----ILLPFLKSVVQSIDLD 155
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 156 QKVVHVIVPEGLID 169
>gi|365157117|ref|ZP_09353398.1| ribosome maturation factor rimM [Bacillus smithii 7_3_47FAA]
gi|363625851|gb|EHL76862.1| ribosome maturation factor rimM [Bacillus smithii 7_3_47FAA]
Length = 172
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ ++G + + HG++GE+ V TDFPE R+ T +L L +T + L+ H
Sbjct: 4 WFNIGKIVNTHGIKGEVRVLSRTDFPEERYKKGNTLYL---FLPGQT-EGIPLVVN-SHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG +++ G+ L E + ELE+GE+Y ++G + V E G+
Sbjct: 59 THKSFDLLSFEGYESINDVEKFKGAMLKIPESQQHELEEGEYYFHQIIGCQ-VKTEDGDS 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG V + GAND+ V D++G +IP++E+IV VD++
Sbjct: 118 VGIVTEILTPGANDVWVV-------------------KDSNGNEYYIPYIEDIVKKVDID 158
Query: 256 GREMQITPPKGLL 268
+ + I P +GLL
Sbjct: 159 EKIIIIHPMEGLL 171
>gi|419851324|ref|ZP_14374273.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 35B]
gi|419853150|ref|ZP_14375986.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 2-2B]
gi|386406580|gb|EIJ21582.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 35B]
gi|386408716|gb|EIJ23609.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 2-2B]
Length = 207
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF PG+ Q
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFE-PGSVLYSQD------- 54
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
E + I + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 55 GETEYIVEGSRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVIDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|417643572|ref|ZP_12293614.1| 16S rRNA processing protein RimM [Staphylococcus warneri VCU121]
gi|445059841|ref|YP_007385245.1| 16S rRNA-processing protein RimM [Staphylococcus warneri SG1]
gi|330685679|gb|EGG97320.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU121]
gi|443425898|gb|AGC90801.1| 16S rRNA-processing protein RimM [Staphylococcus warneri SG1]
Length = 167
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG---RETIREVKLIDGRE 134
V+VG + + HG++GE+ VK ++DF + RF PG +VL + +E+ + R
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRF-QPG------EVLTAKLNQIEKELTVTSYRT 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G +L FEGID + L G+ L R+ + ELE+ EFY D++G V E
Sbjct: 56 HKGFH--MLKFEGIDNINDIEYLKGALLYQERDHEDIELEENEFYYSDIIGCTVFDDEQ- 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ +G + ++F +GAND V V++G +E IP++ ++V VD
Sbjct: 113 QPIGRITSIFETGAND---------VWVVKGDKE------------YLIPYIADVVKEVD 151
Query: 254 MNGREMQITPPKGLLE 269
+ + + ITP +GLL+
Sbjct: 152 VENKTVIITPMEGLLD 167
>gi|398838961|ref|ZP_10596212.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM102]
gi|398113843|gb|EJM03683.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM102]
Length = 178
Score = 84.3 bits (207), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|407366250|ref|ZP_11112782.1| 16S rRNA-processing protein RimM [Pseudomonas mandelii JR-1]
Length = 178
Score = 84.0 bits (206), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAIADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|15615043|ref|NP_243346.1| 16S rRNA processing protein [Bacillus halodurans C-125]
gi|14423895|sp|Q9KA14.1|RIMM_BACHD RecName: Full=Ribosome maturation factor RimM
gi|10175100|dbj|BAB06199.1| 16S rRNA processing protein [Bacillus halodurans C-125]
Length = 173
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+++VG + + HG++GE+ V +TDF + RF++ T ++ R E + H
Sbjct: 4 WLNVGKIVNTHGVRGEVRVLSTTDFEDDRFSSGKTLYVM-----RPNQNERVAVTVASHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +L FEG ++ G L DRPEL +GEF+ +++G VV GE
Sbjct: 59 KHKNFDLLCFEGYPSINDVEAFKGGRLQVPIEDRPELGEGEFFYHEIIGCSVVTI-AGEE 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V C G+ + IP++E++V VD+
Sbjct: 118 LGKVKEILSPGANDVWVVQCRR------------------GGKDLLIPYIEQVVKQVDLE 159
Query: 256 GREMQITPPKGLLE 269
+++ I P +GLLE
Sbjct: 160 KQQITIEPMEGLLE 173
>gi|227833408|ref|YP_002835115.1| 16S rRNA-processing protein RimM [Corynebacterium aurimucosum ATCC
700975]
gi|262184396|ref|ZP_06043817.1| 16S rRNA-processing protein RimM [Corynebacterium aurimucosum ATCC
700975]
gi|227454424|gb|ACP33177.1| 16S rRNA processing protein [Corynebacterium aurimucosum ATCC
700975]
Length = 166
Score = 84.0 bits (206), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTP----GTRWLRQQVLGRETIREVKLIDGREH 135
+G V HG++GE+SV+ +TD PE RF GT+ ++ L TI V+ GR
Sbjct: 5 IGRVVKSHGIKGEVSVEVTTDSPETRFAVGEVLHGTQGKKEHEL---TIAAVRAHKGR-- 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM--KETG 193
++TF+ I A L G+ A D PE +DG FY +L G+RV++ KE G
Sbjct: 60 -----LLITFKEIPDRTAADSLRGTQFFAEPLDDPE-DDG-FYDHELEGLRVLLDRKEVG 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E+ G V G ++ + A G+ +PFVEEIVP +D
Sbjct: 113 EVTG-----------------------VTHGPTQSLLEVTLAEGKEALVPFVEEIVPEID 149
Query: 254 MNGREMQITPPKGLLEL 270
++ ITPP+GLL+L
Sbjct: 150 LDAGTCTITPPEGLLDL 166
>gi|387197488|gb|AFJ68807.1| 16s rrna-processing protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 340
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 35/212 (16%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F++ G V HG+ G + VK ++D T+PG R ++ R R + +++ R
Sbjct: 116 FIEAGLVQGAHGVDGCLRVKGTSDVAGSALTSPGLRHIKGPK--RRYPRPITVLEARATV 173
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
+ ++++ EGI+ E A L + +E +RP LE+ EFY +D+V M VVM ++
Sbjct: 174 -EDTYLVKVEGIEGREAAAALRDFKIYVKEEERPSLEEDEFYVKDMVDMDVVMVGAEDVS 232
Query: 196 VGTVVNVFNSG------ANDLLHVMCYSSVNVIEGSEEASSSASDASGR----------- 238
+G VV+V + ANDLL V + D SGR
Sbjct: 233 IGRVVDVITAENARQGLANDLLEVELINQ--------------DDESGRPQLRTEPPPIY 278
Query: 239 LVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
V +PFV++IVPIVD+ GR + I PP GLL+L
Sbjct: 279 QVLVPFVKQIVPIVDLPGRTLHIDPPPGLLDL 310
>gi|317129230|ref|YP_004095512.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
gi|315474178|gb|ADU30781.1| 16S rRNA processing protein RimM [Bacillus cellulosilyticus DSM
2522]
Length = 174
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + HG++GE+ V TDFPE R+ T ++ R V++ R+H
Sbjct: 3 DWLNVGKIVNTHGVRGEVRVISRTDFPEERYAIGNTLYVTSDTDVR---TPVEITSWRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGE 194
++ +LTF+G+D + + GS L + D EL +GEFY +++G V + ++GE
Sbjct: 60 --KQFDLLTFKGLDNLNEVEKFKGSLLQIHQNDASDELSEGEFYYHEIIGSTVYL-QSGE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL-VWIPFVEEIVPIVD 253
++G V + + GAND+ V S+ G+ + IP+++++V VD
Sbjct: 117 VLGHVKEILSPGANDVWVVQ------------------SNTKGKKDMLIPYIDDVVKQVD 158
Query: 254 MNGREMQITPPKGLLE 269
+ +++ I P +GLL+
Sbjct: 159 VKSKKVVIHPMEGLLD 174
>gi|389815307|ref|ZP_10206653.1| 16S rRNA-processing protein [Planococcus antarcticus DSM 14505]
gi|388466086|gb|EIM08395.1| 16S rRNA-processing protein [Planococcus antarcticus DSM 14505]
Length = 171
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 24/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + +VG + + HG++GE+ V TDFP+ RF GT+ ++ + VK+ R+
Sbjct: 1 MQWFNVGKIVNTHGIRGEVRVLSRTDFPDERFAV-GTKLGLFTPDAKKPVM-VKIASHRQ 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H + ++TFEG + PL S L E D ELED FY +++G RV E E
Sbjct: 59 HKNFE--LVTFEGYPNINDVEPLKESYLKIAEHDLTELEDNAFYHHEILGCRVFSTEGQE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L GT+ + +GAND+ V + +G+ +IP++E+IV +D+
Sbjct: 117 L-GTISEILETGANDVWEV-------------------TPKTGKKHYIPYIEDIVKEIDI 156
Query: 255 NGREMQITPPKGLL 268
+ +++ I +GLL
Sbjct: 157 DEKKVIIEVMEGLL 170
>gi|376297468|ref|YP_005168698.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
ND132]
gi|323460030|gb|EGB15895.1| 16S rRNA processing protein RimM [Desulfovibrio desulfuricans
ND132]
Length = 195
Score = 84.0 bits (206), Expect = 3e-13, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 27/199 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG V HG++GE +K D P L TP +L G+ R +++ REH
Sbjct: 7 FIPVGGVVKAHGIRGEFGIKSYADSPALFDRTP--LFLSD---GKGRPRPIEVTSWREHK 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G ++T + +QA L G LL RE D PE ++GE Y ++G RVV+ + G V
Sbjct: 62 GLV--LMTSPQVTDRDQAEALRGRELLVREADLPEPDEGEHYLYQMIGCRVVLTD-GTEV 118
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G +V + +G D VIE E G + +P V E V VD++
Sbjct: 119 GELVGFYETGEQDTW---------VIENGE----------GTEILLPAVPEFVLDVDLDT 159
Query: 257 REMQITPPKGLLELNLRTD 275
+ + PP+GLL+L L +
Sbjct: 160 ETIVVEPPEGLLDLYLHPE 178
>gi|224476353|ref|YP_002633959.1| 16S rRNA-processing protein RimM [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420960|emb|CAL27774.1| 16S rRNA processing protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 158
Score = 83.6 bits (205), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 32/187 (17%)
Query: 85 SVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILT 144
+ HG++GE+ VK ++DF ++RF PG L + G+ET E+ + R H G +LT
Sbjct: 2 NTHGIKGEVRVKSNSDFTDVRFQ-PG-EILTVKHDGKET--ELTVASYRMHKGFH--MLT 55
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRP--ELEDGEFYTRDLVGMRVVMKETGELVGTVVNV 202
FEGI + G +L +E D EL++ EFY D++G V +T +G V +
Sbjct: 56 FEGIHNINDIEHFKGD-VLTQERDHADIELDEHEFYYSDIIGCTVFEGDTP--IGRVKEI 112
Query: 203 FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT 262
F +GAND V V++G +E IP++ ++V VD+ GR +QIT
Sbjct: 113 FETGAND---------VWVVKGDKE------------YMIPYIADVVKEVDVEGRRIQIT 151
Query: 263 PPKGLLE 269
P +G+L+
Sbjct: 152 PLEGMLD 158
>gi|418324129|ref|ZP_12935380.1| 16S rRNA processing protein RimM [Staphylococcus pettenkoferi
VCU012]
gi|365227626|gb|EHM68818.1| 16S rRNA processing protein RimM [Staphylococcus pettenkoferi
VCU012]
Length = 167
Score = 83.6 bits (205), Expect = 3e-13, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF ++RF L ET+ E+ + R H G
Sbjct: 3 VEVGEIVNTHGIKGEVKVKSNSDFTDVRFQQGEV--LEVHPRNGETV-ELVVTSHRVHKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEG + + L G TL R+ + EL + E+Y D++G V ++ E +
Sbjct: 60 LH--MLKFEGRNNINDVEHLKGETLYQERDHEDIELAENEYYYSDIIGCTVFNED--EPL 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +F +GAND V V++G +E IP++ ++V VD+ G
Sbjct: 116 GRVTEIFETGAND---------VWVVQGDKE------------YLIPYIADVVQEVDVEG 154
Query: 257 REMQITPPKGLLE 269
R++ ITP +GLL+
Sbjct: 155 RQIHITPMEGLLD 167
>gi|228475074|ref|ZP_04059802.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
gi|418620456|ref|ZP_13183260.1| 16S rRNA processing protein RimM [Staphylococcus hominis VCU122]
gi|228271059|gb|EEK12447.1| 16S rRNA processing protein RimM [Staphylococcus hominis SK119]
gi|374822586|gb|EHR86606.1| 16S rRNA processing protein RimM [Staphylococcus hominis VCU122]
Length = 166
Score = 83.6 bits (205), Expect = 3e-13, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF + RF PG + V E+ + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDTRF-QPGEVLI---VNHHHNEIEMTITSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + G L R+ + EL + EFY D++G V +T +
Sbjct: 59 FH--MLKFEGINNINDIEQYKGDYLFQERDHEDIELNENEFYYSDIIGCTVFNNDTP--I 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++ ++V VD+
Sbjct: 115 GRVINIFETGAND---------VWVVKGDKE------------YLIPYIADVVKEVDVEH 153
Query: 257 REMQITPPKGLLE 269
+ + ITP +GLLE
Sbjct: 154 KTICITPMEGLLE 166
>gi|116495081|ref|YP_806815.1| 16S rRNA-processing protein RimM [Lactobacillus casei ATCC 334]
gi|191638584|ref|YP_001987750.1| 16S rRNA-processing protein RimM [Lactobacillus casei BL23]
gi|227534906|ref|ZP_03964955.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|385820298|ref|YP_005856685.1| 16S rRNA processing protein RimM [Lactobacillus casei LC2W]
gi|385823494|ref|YP_005859836.1| 16S rRNA processing protein RimM [Lactobacillus casei BD-II]
gi|409997444|ref|YP_006751845.1| ribosome maturation factor RimM [Lactobacillus casei W56]
gi|417986974|ref|ZP_12627536.1| RimM family 16S rRNA processing protein [Lactobacillus casei 32G]
gi|417989873|ref|ZP_12630371.1| RimM family 16S rRNA processing protein [Lactobacillus casei
A2-362]
gi|417993114|ref|ZP_12633464.1| RimM family 16S rRNA processing protein [Lactobacillus casei CRF28]
gi|417996466|ref|ZP_12636745.1| RimM family 16S rRNA processing protein [Lactobacillus casei M36]
gi|417999333|ref|ZP_12639543.1| RimM family 16S rRNA processing protein [Lactobacillus casei
T71499]
gi|418008195|ref|ZP_12648063.1| RimM family 16S rRNA processing protein [Lactobacillus casei UW4]
gi|418014534|ref|ZP_12654130.1| RimM family 16S rRNA processing protein [Lactobacillus casei
Lpc-37]
gi|122263502|sp|Q038J9.1|RIMM_LACC3 RecName: Full=Ribosome maturation factor RimM
gi|238693051|sp|B3WEU1.1|RIMM_LACCB RecName: Full=Ribosome maturation factor RimM
gi|116105231|gb|ABJ70373.1| 16S rRNA processing protein RimM [Lactobacillus casei ATCC 334]
gi|190712886|emb|CAQ66892.1| Probable 16S rRNA-processing protein rimM [Lactobacillus casei
BL23]
gi|227187662|gb|EEI67729.1| 16S rRNA processing protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|327382625|gb|AEA54101.1| 16S rRNA processing protein RimM [Lactobacillus casei LC2W]
gi|327385821|gb|AEA57295.1| 16S rRNA processing protein RimM [Lactobacillus casei BD-II]
gi|406358456|emb|CCK22726.1| Ribosome maturation factor RimM [Lactobacillus casei W56]
gi|410524038|gb|EKP98955.1| RimM family 16S rRNA processing protein [Lactobacillus casei 32G]
gi|410532026|gb|EKQ06737.1| RimM family 16S rRNA processing protein [Lactobacillus casei CRF28]
gi|410535312|gb|EKQ09937.1| RimM family 16S rRNA processing protein [Lactobacillus casei M36]
gi|410537015|gb|EKQ11597.1| RimM family 16S rRNA processing protein [Lactobacillus casei
A2-362]
gi|410539353|gb|EKQ13886.1| RimM family 16S rRNA processing protein [Lactobacillus casei
T71499]
gi|410547139|gb|EKQ21377.1| RimM family 16S rRNA processing protein [Lactobacillus casei UW4]
gi|410553582|gb|EKQ27584.1| RimM family 16S rRNA processing protein [Lactobacillus casei
Lpc-37]
Length = 172
Score = 83.6 bits (205), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+ D+G + + HG++GE+ V +TDFP RF T ++ TI+ V REH
Sbjct: 3 DYYDIGTIVNTHGIRGEVRVLVTTDFPADRFKVGNTVYVATSPKTALTIQSV-----REH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+ + Q P G L E L++G +Y +D++G+ V+ E G+
Sbjct: 58 KGLT--LLTFKDYTDINQVLPFKGKKLQVTETALQPLDEGSYYYKDIIGLTVI-DEQGQT 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND+ + S SD + +PF++ +V +D++
Sbjct: 115 LGKVNEILSPGPNDVWVI--------------PRSGKSD-----ILLPFLKSVVQSIDLD 155
Query: 256 GREMQITPPKGLLE 269
+ + P+GL++
Sbjct: 156 QKVAHVIVPEGLID 169
>gi|228998618|ref|ZP_04158205.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
gi|228761086|gb|EEM10045.1| Ribosome maturation factor rimM [Bacillus mycoides Rock3-17]
Length = 188
Score = 83.6 bits (205), Expect = 3e-13, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ G E + VK+ R+H
Sbjct: 21 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDK-GTEPL-SVKVASHRQH- 77
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ L GS++ E EL +GE+Y +++G +VV +E GE
Sbjct: 78 --KTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQLGELAEGEYYYHEIIGCKVVTEE-GED 134
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP++++IV V++
Sbjct: 135 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDIVLQVNIE 175
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 176 NKLVTIHVMEGLL 188
>gi|199597123|ref|ZP_03210555.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229552443|ref|ZP_04441168.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|385828297|ref|YP_005866069.1| 16S rRNA processing protein [Lactobacillus rhamnosus GG]
gi|421768777|ref|ZP_16205487.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LRHMDP2]
gi|421771071|ref|ZP_16207732.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LRHMDP3]
gi|423078851|ref|ZP_17067528.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus ATCC
21052]
gi|199591927|gb|EDZ00002.1| RimM protein, required for 16S rRNA processing [Lactobacillus
rhamnosus HN001]
gi|229314180|gb|EEN80153.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LMS2-1]
gi|259649942|dbj|BAI42104.1| 16S rRNA processing protein [Lactobacillus rhamnosus GG]
gi|357549139|gb|EHJ30987.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus ATCC
21052]
gi|411185626|gb|EKS52753.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LRHMDP2]
gi|411186506|gb|EKS53630.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus LRHMDP3]
Length = 198
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+ D+G + + HG++GE+ V +TDFPE RF ++ TI V R+H
Sbjct: 29 DYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSV-----RQH 83
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+ + Q P G L E LE+G +Y +D++G+ V+ E G+
Sbjct: 84 KGLT--MLTFKDYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVI-DEHGQT 140
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND+ V G E + +PF++ +V +D+
Sbjct: 141 LGKVSEILSPGPNDVW-------VIPRPGKSE------------LLLPFLKSVVQTIDLE 181
Query: 256 GREMQITPPKGLLE 269
+E + P+GL++
Sbjct: 182 QKEAHVIVPEGLID 195
>gi|384202162|ref|YP_005587909.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. longum
KACC 91563]
gi|338755169|gb|AEI98158.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. longum
KACC 91563]
Length = 207
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 21/213 (9%)
Query: 64 TQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET 123
TQ+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 2 TQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQD 54
Query: 124 IREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDL 182
+++G + WIL EG+D A L G L D + LE E+Y +DL
Sbjct: 55 GETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDL 113
Query: 183 VGMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235
+G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 114 IGLEARLVEGNGLGLPAGQVVGKVVDVIDSPAQSLLKIRLTEPV--VTGQ---NSKGEDV 168
Query: 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 169 VEKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|398858758|ref|ZP_10614445.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM79]
gi|398238485|gb|EJN24212.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM79]
Length = 178
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DHLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|403223673|dbj|BAM41803.1| 16S rRNA processing protein [Theileria orientalis strain Shintoku]
Length = 865
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+V +G + + +GL+G + VK T PE+R PG R+L+ E + +KL GR
Sbjct: 520 DYVVIGEILTTYGLKGHVKVKSYTPRPEVRLCEPGYRYLKIP-YNEEKVIPIKLERGRNS 578
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM----KE 191
+ +I+ FEG DTVEQ++ L + L + P LE+ +Y+RDL+G+ + + K+
Sbjct: 579 GSKDVYIVKFEGFDTVEQSQRLSNTYLTVPLAEMPPLEEDAYYSRDLIGLYLYLYNDIKK 638
Query: 192 T--GELVGTV 199
T G++VG V
Sbjct: 639 TKLGKIVGFV 648
>gi|395236845|ref|ZP_10414992.1| Ribosome maturation factor rimM [Turicella otitidis ATCC 51513]
gi|423350227|ref|ZP_17327880.1| 16S rRNA processing protein RimM [Turicella otitidis ATCC 51513]
gi|394487985|emb|CCI83080.1| Ribosome maturation factor rimM [Turicella otitidis ATCC 51513]
gi|404387794|gb|EJZ82893.1| 16S rRNA processing protein RimM [Turicella otitidis ATCC 51513]
Length = 161
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 93/193 (48%), Gaps = 38/193 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE+ V+P+TD PE RF PGTR ++ G TI + P Q
Sbjct: 5 IGRVVKPHGVRGEVVVEPTTDAPEERFA-PGTRLESKR--GPLTIAHAR-------PHQG 54
Query: 140 SWILTFEGIDTVEQARPLVGSTLLA--REGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+++FE + A L G+ A RE D DG FY +L G+ VV + GE VG
Sbjct: 55 RLLVSFEEVPDRNAAEALRGTRFFAAPREED-----DGGFYDHELEGLEVV--KDGERVG 107
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + LL V +EG EA +PFVE IVP VD+
Sbjct: 108 EVTAVNRNTRQALLVVG-------LEGGGEA------------LVPFVEAIVPEVDLEAE 148
Query: 258 EMQITPPKGLLEL 270
+ ITPP GLLEL
Sbjct: 149 RVVITPPDGLLEL 161
>gi|404422832|ref|ZP_11004506.1| 16S rRNA-processing protein RimM [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403655762|gb|EJZ10601.1| 16S rRNA-processing protein RimM [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 175
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V+ TD P+ RF PG LR + G RE + R+
Sbjct: 1 MDLV-VGRVVKAHGITGEVVVEVRTDDPDARFA-PGVA-LRGRAKGGAE-REFSVESVRD 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ G+ A L G+ + D P ++D EFY +L GMRVV + G
Sbjct: 57 HAGR--LLIRLAGVSDRNAADELRGTVFMVDTADLPTIDDPDEFYDHELEGMRVVTVD-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V V ++ A +LL V +D GR V +PFV IV V
Sbjct: 114 TAVGVVREVLHTAAGELLSV------------------KADPDGREVLVPFVSAIVTSVS 155
Query: 254 MNGREMQITPPKGLLELN 271
+ I PP GLL L+
Sbjct: 156 RETGTVCIDPPDGLLNLD 173
>gi|229818298|ref|ZP_04448579.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784168|gb|EEP20282.1| hypothetical protein BIFANG_03598 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 204
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 29/194 (14%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
G++GE++V+ TD PE RF PG+ + R + + R WI+ E
Sbjct: 25 QGMKGEVTVQVFTDEPEWRFE-PGSELFSRNGEQRYVVERSRTFKNR-------WIIKLE 76
Query: 147 GIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKETGEL-------VG 197
G D + L G+ L E D PE LE E+Y +DL+G+ M E E+ +G
Sbjct: 77 GCDDRNASEALNGTELYG-EADDPEDMLEADEWYPKDLIGLEARMDEENEIGAPAGKPIG 135
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS---GRLVWIPFVEEIVPIVDM 254
VV+V +S A LL + V + +ASD + + +PFV+E+VP++D+
Sbjct: 136 MVVDVIDSPAQSLLKIRLTEPVE--------TGTASDGTPIVEKTTLVPFVDELVPLIDL 187
Query: 255 NGREMQITPPKGLL 268
+ + PP GL+
Sbjct: 188 EEGYLTLDPPGGLI 201
>gi|418630379|ref|ZP_13192861.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU128]
gi|420191713|ref|ZP_14697624.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM023]
gi|374837920|gb|EHS01478.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
VCU128]
gi|394265864|gb|EJE10511.1| 16S rRNA processing protein RimM [Staphylococcus epidermidis
NIHLM023]
Length = 167
Score = 83.2 bits (204), Expect = 4e-13, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 35/196 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDG-REH 135
V+VG + + HG++GE+ VK ++DF E RF PG +Q+L + E V +D R H
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTETRF-QPG-----EQLLVKHNNTEIVYTVDSYRIH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETG 193
G +L FE I+ + L G + +E D ++E G E+Y D++G V K+
Sbjct: 57 KGFH--MLKFERINNINDIEHLKGDYIY-QERDHQDIELGEHEYYYSDIIGC-TVFKDDD 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+F +GAND V +++G +E IP++E++V +D
Sbjct: 113 TPIGRVINIFETGAND---------VWIVKGEKE------------YLIPYIEDVVKDID 151
Query: 254 MNGREMQITPPKGLLE 269
+ + ++ITP +GLL+
Sbjct: 152 IENKTIKITPMEGLLD 167
>gi|258508636|ref|YP_003171387.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus GG]
gi|258539813|ref|YP_003174312.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus Lc 705]
gi|385835465|ref|YP_005873239.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus ATCC
8530]
gi|418070815|ref|ZP_12708090.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus R0011]
gi|257148563|emb|CAR87536.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus GG]
gi|257151489|emb|CAR90461.1| 16S rRNA processing protein rimM [Lactobacillus rhamnosus Lc 705]
gi|355394956|gb|AER64386.1| 16S rRNA processing protein RimM [Lactobacillus rhamnosus ATCC
8530]
gi|357540235|gb|EHJ24252.1| 16S rRNA-processing protein RimM [Lactobacillus rhamnosus R0011]
Length = 172
Score = 83.2 bits (204), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+ D+G + + HG++GE+ V +TDFPE RF ++ TI V R+H
Sbjct: 3 DYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSV-----RQH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+ + Q P G L E LE+G +Y +D++G+ V+ E G+
Sbjct: 58 KGLT--MLTFKDYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVI-DEHGQT 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND+ V G E + +PF++ +V +D+
Sbjct: 115 LGKVSEILSPGPNDVW-------VIPRPGKSE------------LLLPFLKSVVQTIDLE 155
Query: 256 GREMQITPPKGLLE 269
+E + P+GL++
Sbjct: 156 QKEAHVIVPEGLID 169
>gi|229006118|ref|ZP_04163806.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
gi|228755194|gb|EEM04551.1| Ribosome maturation factor rimM [Bacillus mycoides Rock1-4]
Length = 171
Score = 83.2 bits (204), Expect = 5e-13, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ G E + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDK-GTEPL-SVKVASHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ L GS++ E EL +GE+Y +++G +VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQLGELAEGEYYYHEIIGCKVVTEE-GED 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP++++IV V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDIVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|25028513|ref|NP_738567.1| 16S rRNA-processing protein RimM [Corynebacterium efficiens YS-314]
gi|259507567|ref|ZP_05750467.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
gi|46397692|sp|Q8FP33.1|RIMM_COREF RecName: Full=Ribosome maturation factor RimM
gi|23493798|dbj|BAC18767.1| putative 16S rRNA processing protein [Corynebacterium efficiens
YS-314]
gi|259164841|gb|EEW49395.1| 16S rRNA processing protein RimM [Corynebacterium efficiens YS-314]
Length = 169
Score = 82.8 bits (203), Expect = 5e-13, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 32/195 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL-ID-GREH 135
+ +G V HG++GE+ V+ +TD P++R+ PG + + GR+T RE L ID R H
Sbjct: 5 LQIGRVIKSHGIRGEVVVEVTTDDPDIRYA-PG-----EVLHGRQTGREHTLTIDTARAH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++ FE I A L G+ A +R + E+G FY +L G+R++ G
Sbjct: 59 QGR--LLIKFEEIPDRTAADSLRGTRFFAPPLEREDDEEG-FYDHELEGLRII--HDGAD 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V + A ++L V SG+ V IPFV IVP VD+
Sbjct: 114 IGVVTGVMHGPAGEILEVEL-------------------TSGKEVLIPFVHAIVPEVDLE 154
Query: 256 GREMQITPPKGLLEL 270
ITPP GLL+L
Sbjct: 155 AGTATITPPDGLLDL 169
>gi|398879545|ref|ZP_10634637.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM67]
gi|398882256|ref|ZP_10637226.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM60]
gi|398196253|gb|EJM83266.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM67]
gi|398199505|gb|EJM86447.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM60]
Length = 178
Score = 82.8 bits (203), Expect = 5e-13, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAIADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L+G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DHLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|228992570|ref|ZP_04152497.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
gi|228767204|gb|EEM15840.1| Ribosome maturation factor rimM [Bacillus pseudomycoides DSM 12442]
Length = 188
Score = 82.8 bits (203), Expect = 5e-13, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ G E + VK+ R+H
Sbjct: 21 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWHDK-GTEPL-SVKVASHRQH- 77
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ L GS++ E EL +GE+Y +++G +VV +E GE
Sbjct: 78 --KTFDLLTFEGYNNVDEVEKLKGSSIKVPEEQLGELAEGEYYYHEIIGCKVVTEE-GED 134
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 135 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 175
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 176 NKLVTIHVMEGLL 188
>gi|251797469|ref|YP_003012200.1| 16S rRNA processing protein RimM [Paenibacillus sp. JDR-2]
gi|247545095|gb|ACT02114.1| 16S rRNA processing protein RimM [Paenibacillus sp. JDR-2]
Length = 172
Score = 82.8 bits (203), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HGL+GE+ V P TDF E RF + L+ G++ EV++ REH
Sbjct: 5 YYNVGKLVNTHGLRGEVKVLPQTDFAESRFASGSKLSLQHPDNGQKL--EVEVTGAREHK 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G +IL +G + + + G TL E + +L+DGE+Y +++G R V+ E GE +
Sbjct: 63 GM--FILKLKGYNDINEVEKYKGWTLKIGEEELEQLDDGEYYYHEIIGCR-VLTEDGEEL 119
Query: 197 GTVVNVFNSGANDL 210
GT+ ++ GAND+
Sbjct: 120 GTISDILRPGANDV 133
>gi|229592397|ref|YP_002874516.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens SBW25]
gi|259585649|sp|C3K1H0.1|RIMM_PSEFS RecName: Full=Ribosome maturation factor RimM
gi|229364263|emb|CAY51980.1| 16S rRNA processing protein [Pseudomonas fluorescens SBW25]
Length = 178
Score = 82.4 bits (202), Expect = 7e-13, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L G + ++ +GAND++ V + + + D RL +P+ +
Sbjct: 114 VI-DQLGQLFGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTK 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLEAGEMKV 172
>gi|118479064|ref|YP_896215.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
gi|118418289|gb|ABK86708.1| 16S rRNA processing protein RimM [Bacillus thuringiensis str. Al
Hakam]
Length = 193
Score = 82.4 bits (202), Expect = 7e-13, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G VK+ R+H
Sbjct: 26 WFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPF--PVKITSHRQH- 82
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE
Sbjct: 83 --KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEA 139
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ V + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 140 LGTIKEVLSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 180
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 181 NKLVTIHVMEGLL 193
>gi|317495378|ref|ZP_07953747.1| 16S rRNA processing protein RimM [Gemella morbillorum M424]
gi|316914437|gb|EFV35914.1| 16S rRNA processing protein RimM [Gemella morbillorum M424]
Length = 169
Score = 82.4 bits (202), Expect = 7e-13, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ VG + + H L+GE+ V STDF E RF G++ L + G + IREV + R H
Sbjct: 3 LKVGKIVNTHSLKGEVKVISSTDFEEERFKK-GSKLLITR--GNQLIREVVVQSYRNH-- 57
Query: 138 QKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
K+++L FEGID+VE+A L + ELE+ EFY ++G V E + +
Sbjct: 58 -KNFLLVKFEGIDSVEEAEKLKNLQIKIDSDKVGELEENEFYFHQIIGCE-VFDENDKNL 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G ++++ GAND V VI+G +G+ + IP++E++V +D+
Sbjct: 116 GEIIDILTPGAND---------VWVIKGE----------NGKEILIPYIEDVVKKIDITN 156
Query: 257 REMQITPPKGLLE 269
+++ I +GL++
Sbjct: 157 KKVNIEVMEGLID 169
>gi|448237356|ref|YP_007401414.1| ribosome maturation factor [Geobacillus sp. GHH01]
gi|445206198|gb|AGE21663.1| ribosome maturation factor [Geobacillus sp. GHH01]
Length = 172
Score = 82.4 bits (202), Expect = 8e-13, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RERDTEPIEVTVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ G+ L E EL +GE+Y +++G VV E GE
Sbjct: 59 VHKSFDLLSFEGYDSINDVERFKGAMLKVPESQLGELAEGEYYFHEIIGCTVV-TEGGET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + GAND+ V +GSE IP+++E+V VD +
Sbjct: 118 IGAVKEILTPGANDVW------VVRREDGSE-------------ALIPYIDEVVLHVDPD 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 RKTIIIRPMEGLLE 172
>gi|451944525|ref|YP_007465161.1| 16S rRNA-processing protein RimM [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903912|gb|AGF72799.1| 16S rRNA-processing protein RimM [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 167
Score = 82.4 bits (202), Expect = 8e-13, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE+ V+P+TD P +RF +VL GR+ RE +L P Q
Sbjct: 5 IGRVIKSHGIRGEVVVEPTTDEPGIRFAV-------GEVLDGRQGGREHELTVATVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ FE + A L G A + +DG FY +L G+RV+ G+ +G
Sbjct: 58 NRLLIKFEEVPDRTAADSLRGVRFFAAPLESDGDDDG-FYDHELEGLRVI--HDGDDIGE 114
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A ++L V + G+ IPFV +IVP VD+
Sbjct: 115 VTGVIHGPAGEILEVEL-------------------SGGKETLIPFVHDIVPEVDLEAGT 155
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 156 CTITPPEGLLEL 167
>gi|440744258|ref|ZP_20923562.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP39023]
gi|440374272|gb|ELQ11008.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP39023]
Length = 179
Score = 82.4 bits (202), Expect = 8e-13, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
++DM EM++
Sbjct: 162 LVIDMAAGEMKV 173
>gi|319950997|ref|ZP_08024867.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
gi|319435340|gb|EFV90590.1| 16S rRNA-processing protein RimM [Dietzia cinnamea P4]
Length = 177
Score = 82.0 bits (201), Expect = 9e-13, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG-RETIREVKLIDGREHPGQ 138
VG V HG++GE+ V+ TD PE RF PG R + G R T R+V + R H G+
Sbjct: 5 VGRVVKSHGVRGELVVEVRTDSPEERFA-PGARLTGRVGKGDRATDRDVTVEAARSHSGR 63
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVG 197
++ G+ + A L G LL + P+ ED E++ LVG+RV + +G +G
Sbjct: 64 --LLVRLAGVSDRDTADALRGMLLLVDSAELPDPEDPDEYHDHQLVGLRV-LDTSGAPLG 120
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V + ++ A +LL + + +G++ +PFV E+VP VD+ G
Sbjct: 121 EVTEIVHTPAGELL------GIRLTDGAD-------------ALVPFVTEMVPEVDVPGG 161
Query: 258 EMQITPPKGLLEL 270
I PP+GLL+L
Sbjct: 162 TCVIDPPEGLLDL 174
>gi|440720355|ref|ZP_20900773.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP34876]
gi|440726483|ref|ZP_20906736.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP34881]
gi|440365880|gb|ELQ02967.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP34876]
gi|440366065|gb|ELQ03150.1| 16S rRNA-processing protein RimM [Pseudomonas syringae BRIP34881]
Length = 179
Score = 82.0 bits (201), Expect = 9e-13, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L GM+V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGMKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|333919236|ref|YP_004492817.1| ribosome maturation factor rimM [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481457|gb|AEF40017.1| Ribosome maturation factor rimM [Amycolicicoccus subflavus
DQS3-9A1]
Length = 171
Score = 82.0 bits (201), Expect = 9e-13, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++GEI V+ TD PE RF LR + + + REH G+
Sbjct: 5 VGRIAKSHGIRGEIVVEVRTDEPEQRFAVGAQ--LRARAPRSSAVTAFTVEAAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++ G+ E A L G + + P D E+Y +L G+ V G+L G +
Sbjct: 62 -LLVRLAGVADRESADSLRGMLFVVDSSELPASGDDEYYDHELEGLVVRFASGGDL-GVI 119
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V ++ A + L + A+D GR V IPF+ + VP+VD+ G +
Sbjct: 120 REVLHTAAGETLSI-----------------EATD--GREVLIPFITDFVPVVDVPGGFV 160
Query: 260 QITPPKGLLEL 270
++TPP GLLEL
Sbjct: 161 EVTPPDGLLEL 171
>gi|257877633|ref|ZP_05657286.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
gi|257811799|gb|EEV40619.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC20]
Length = 174
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ R + L RE + LI
Sbjct: 3 EYLNVGKIVNTHGIRGEVRVISQTDFPEERY-----RKGAELTLFRENKEPLPLIVSGHR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +LTFEG + P L + D +L + EFY +++G+ VV +E G +
Sbjct: 58 KHKNFDLLTFEGYSNINDVEPFRNGILKVTKDDLVDLAENEFYYHEIIGLEVV-EEDGTV 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V +G ++A IP++E +V +D+
Sbjct: 117 IGKVKEILSPGANDVWVVQ-------RKGKKDA------------LIPYIESVVHTIDLE 157
Query: 256 GREMQITPPKGLLE 269
++ + P+GLL+
Sbjct: 158 NGQVTVEIPEGLLD 171
>gi|68536268|ref|YP_250973.1| 16S rRNA-processing protein RimM [Corynebacterium jeikeium K411]
gi|260578968|ref|ZP_05846871.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
gi|109893009|sp|Q4JV02.1|RIMM_CORJK RecName: Full=Ribosome maturation factor RimM
gi|68263867|emb|CAI37355.1| 16S rRNA processing protein [Corynebacterium jeikeium K411]
gi|258602942|gb|EEW16216.1| probable 16S rRNA-processing protein RimM [Corynebacterium jeikeium
ATCC 43734]
Length = 187
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 31/205 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GE+ V P+TD PELRF T + + G++ +E+ L P
Sbjct: 3 LQIGRVIKPHGVRGEVVVDPTTDTPELRFATG------EVLKGKQAGKELSLTVRSFRPH 56
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK------- 190
Q ++TFE I A L G A + +D FY +L G+ +
Sbjct: 57 QGRLLVTFEEIADRTAAESLRGVRFFA--APVHDEDDDGFYDHELEGLTAYLLAPGTDLK 114
Query: 191 ----ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
+ G+LVG VV V ++ A LL ++ + S +G+ V +PF
Sbjct: 115 GDEIQLGDLVGEVVAVEHTPAGQLLVILI------------DAESQLPTAGKEVLVPFRH 162
Query: 247 EIVPIVDMNGREMQITPPKGLLELN 271
+IVP+VD+ + +TPP+GLLEL+
Sbjct: 163 QIVPVVDLEEEILVLTPPEGLLELS 187
>gi|30263845|ref|NP_846222.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Ames]
gi|47529270|ref|YP_020619.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227813250|ref|YP_002813259.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229600064|ref|YP_002868079.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. A0248]
gi|254683450|ref|ZP_05147310.1| 16S rRNA-processing protein RimM [Bacillus anthracis str.
CNEVA-9066]
gi|254735880|ref|ZP_05193586.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Western
North America USA6153]
gi|254751179|ref|ZP_05203218.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Vollum]
gi|254756727|ref|ZP_05208756.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Australia
94]
gi|386737664|ref|YP_006210845.1| 16S rRNA-processing protein rimM [Bacillus anthracis str. H9401]
gi|421507381|ref|ZP_15954301.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. UR-1]
gi|421639597|ref|ZP_16080188.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. BF1]
gi|33301488|sp|Q81WJ5.1|RIMM_BACAN RecName: Full=Ribosome maturation factor RimM
gi|254797741|sp|C3P5P3.1|RIMM_BACAA RecName: Full=Ribosome maturation factor RimM
gi|254797742|sp|C3L785.1|RIMM_BACAC RecName: Full=Ribosome maturation factor RimM
gi|30258489|gb|AAP27708.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Ames]
gi|47504418|gb|AAT33094.1| 16S rRNA processing protein RimM [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005104|gb|ACP14847.1| 16S rRNA processing protein RimM [Bacillus anthracis str. CDC 684]
gi|229264472|gb|ACQ46109.1| 16S rRNA processing protein RimM [Bacillus anthracis str. A0248]
gi|384387516|gb|AFH85177.1| 16S rRNA-processing protein rimM [Bacillus anthracis str. H9401]
gi|401822515|gb|EJT21665.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. UR-1]
gi|403393262|gb|EJY90507.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. BF1]
Length = 171
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPF--PVKITSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ V + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEVLSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVTEGLL 171
>gi|339624587|ref|ZP_08660376.1| 16S rRNA-processing protein RimM [Fructobacillus fructosus KCTC
3544]
Length = 172
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +G + + HG++GE+ VK TDF E RF G + R L E + R H
Sbjct: 5 NYFKIGTIVNTHGIRGELKVKAITDFGETRFAK-GAKVYR---LADGKYHEETIEKARVH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G W+LTF+G+ + + G L DR +L+DGE+Y D++ V E+G++
Sbjct: 61 KGM--WLLTFKGVTNINEVEAYKGQDLFVAAEDREDLDDGEYYYSDIIDC-TVQDESGQV 117
Query: 196 VGTVVNVFNSGANDL 210
+G V + +GAND+
Sbjct: 118 IGQVKEIMETGANDV 132
>gi|422809875|ref|ZP_16858286.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J1-208]
gi|378752076|gb|EHY62663.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J1-208]
Length = 172
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV E GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTE-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 120 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|329766863|ref|ZP_08258391.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
gi|328837588|gb|EGF87213.1| 16S rRNA processing protein RimM [Gemella haemolysans M341]
Length = 169
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 25/190 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + H L+GE+ V STDF E RF GT L + G + ++EV + R H +
Sbjct: 5 VGKIVNTHSLKGEVKVISSTDFEEQRFE-KGTELLITR--GNQVVKEVTVESYRTH--KN 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ ++ F GID++E+A L + + ELE+ EFY +++G V E G+ +G +
Sbjct: 60 NLLVKFVGIDSIEEAEKLKNLQIKIDSDNIGELEENEFYFHEIIGCE-VFDENGKSLGEI 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ GAND V S N G+ + IP++E+IV +D+ +++
Sbjct: 119 SEILTPGAND---VWVIKSQN----------------GKEILIPYIEDIVKKIDVENKKI 159
Query: 260 QITPPKGLLE 269
I +GL++
Sbjct: 160 DIEVMEGLID 169
>gi|372325513|ref|ZP_09520102.1| 16S rRNA processing protein [Oenococcus kitaharae DSM 17330]
gi|366984321|gb|EHN59720.1| 16S rRNA processing protein [Oenococcus kitaharae DSM 17330]
Length = 167
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 94/191 (49%), Gaps = 31/191 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ + TDFP+ RF ++ +E+ ++ R P +
Sbjct: 6 VGKIINTHGIKGELKIDVVTDFPDQRFAKKAKLFVSD--------KELTILTSR--PFHQ 55
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREG-DRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
W++TF G + + G + E +P+ GEF+ ++G++ V E G ++G
Sbjct: 56 FWLVTFAGYEDINLVEQYKGQDIFVDESVSQPKTLPGEFFVSQILGLQAV-DENGRVIGQ 114
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+V+ F++GAND+ + +G+ + IP+++++V VD+ GR+
Sbjct: 115 IVDSFHTGANDVWTI-------------------KKTNGKEILIPYIDQVVKKVDLAGRQ 155
Query: 259 MQITPPKGLLE 269
+ I +GL E
Sbjct: 156 VTIDLLEGLDE 166
>gi|408480086|ref|ZP_11186305.1| 16S rRNA-processing protein RimM [Pseudomonas sp. R81]
Length = 178
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L G + ++ +GAND++ V + + + D RL +P+
Sbjct: 114 VI-DQLGQLFGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTA 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|239631959|ref|ZP_04674990.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301066645|ref|YP_003788668.1| rimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
gi|417980379|ref|ZP_12621059.1| RimM family 16S rRNA processing protein [Lactobacillus casei 12A]
gi|417983615|ref|ZP_12624251.1| RimM family 16S rRNA processing protein [Lactobacillus casei 21/1]
gi|418002274|ref|ZP_12642395.1| RimM family 16S rRNA processing protein [Lactobacillus casei
UCD174]
gi|418011033|ref|ZP_12650802.1| RimM family 16S rRNA processing protein [Lactobacillus casei Lc-10]
gi|239526424|gb|EEQ65425.1| RimM protein [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300439052|gb|ADK18818.1| RimM protein, required for 16S rRNA processing [Lactobacillus casei
str. Zhang]
gi|410524702|gb|EKP99609.1| RimM family 16S rRNA processing protein [Lactobacillus casei 12A]
gi|410527884|gb|EKQ02746.1| RimM family 16S rRNA processing protein [Lactobacillus casei 21/1]
gi|410544436|gb|EKQ18762.1| RimM family 16S rRNA processing protein [Lactobacillus casei
UCD174]
gi|410553081|gb|EKQ27089.1| RimM family 16S rRNA processing protein [Lactobacillus casei Lc-10]
Length = 172
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 27/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+ D+G + + HG++GE+ V +TDFP RF ++ TI+ V REH
Sbjct: 3 DYYDIGTIVNTHGIRGEVRVLVTTDFPADRFKVGNIVYVATSPKTALTIQSV-----REH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G +LTF+ + Q P G L E L++G +Y +D++G+ V+ E G+
Sbjct: 58 KGLT--LLTFKDYTDINQVLPFKGKKLQVTETALQPLDEGSYYYKDIIGLTVI-DEQGQT 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + G ND+ + S SD + +PF++ +V +D++
Sbjct: 115 LGKVNEILSPGPNDVWVI--------------PRSGKSD-----ILLPFLKSVVQSIDLD 155
Query: 256 GREMQITPPKGLLE 269
+ + P+GL++
Sbjct: 156 QKVAHVIVPEGLID 169
>gi|317482001|ref|ZP_07941026.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
gi|316916568|gb|EFV37965.1| 16S rRNA processing protein RimM [Bifidobacterium sp. 12_1_47BFAA]
Length = 204
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG V +V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVADVIDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVEE+VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEELVPDIDLEEQYLTLDPPGGLI 201
>gi|419847636|ref|ZP_14370803.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 1-6B]
gi|419854094|ref|ZP_14376886.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 44B]
gi|386410632|gb|EIJ25410.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 1-6B]
gi|386418164|gb|EIJ32631.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum 44B]
Length = 207
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVIDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|325571318|ref|ZP_08146818.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
gi|325155794|gb|EGC67990.1| 16S rRNA processing protein RimM [Enterococcus casseliflavus ATCC
12755]
Length = 174
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ R + L RE + LI
Sbjct: 3 EYLNVGKIVNTHGIRGEVRVISQTDFPEERY-----RKGAELTLFRENKEPITLIVSGHR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ ++TFEG + P L + D +L + EFY +++G+ VV +E G +
Sbjct: 58 KHKNFDLVTFEGYPNINDVEPFRNGILKVTKDDLVDLAENEFYYHEIIGLEVV-EEDGTI 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V +G ++A IP++E +V +D+
Sbjct: 117 IGKVKEILSPGANDVWVVQ-------RKGKKDA------------LIPYIESVVHTIDLE 157
Query: 256 GREMQITPPKGLLE 269
++ + P+GLL+
Sbjct: 158 NGQVTVEIPEGLLD 171
>gi|422645593|ref|ZP_16708728.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959142|gb|EGH59402.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 179
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYDICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
VDM EM++
Sbjct: 162 LAVDMGAGEMKV 173
>gi|116873228|ref|YP_850009.1| 16S rRNA-processing protein RimM [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|123463935|sp|A0AJP8.1|RIMM_LISW6 RecName: Full=Ribosome maturation factor RimM
gi|116742106|emb|CAK21230.1| 16S rRNA processing protein rimM [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 169
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG+ + Q + L +E + +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGLTGIHQVERMKEGVLKIKETQQTDLEENEFYFHEIIGCTVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
++ + GAND V V++G+++ IP++ ++V ++ N +
Sbjct: 117 EIIEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINTNDK 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|227545804|ref|ZP_03975853.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|312133333|ref|YP_004000672.1| rimm [Bifidobacterium longum subsp. longum BBMN68]
gi|322688487|ref|YP_004208221.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. infantis
157F]
gi|322690497|ref|YP_004220067.1| 16S rRNA-processing protein [Bifidobacterium longum subsp. longum
JCM 1217]
gi|227213920|gb|EEI81759.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|311772552|gb|ADQ02040.1| RimM [Bifidobacterium longum subsp. longum BBMN68]
gi|320455353|dbj|BAJ65975.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459823|dbj|BAJ70443.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 207
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVIDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|398983919|ref|ZP_10690306.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM24]
gi|399011420|ref|ZP_10713752.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM16]
gi|398118162|gb|EJM07902.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM16]
gi|398156557|gb|EJM44975.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM24]
Length = 178
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+++G V ++ +GAND++ V + + + D RL +P+
Sbjct: 114 VI-DQLGQMLGKVDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTA 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|317133000|ref|YP_004092314.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
gi|315470979|gb|ADU27583.1| 16S rRNA processing protein RimM [Ethanoligenens harbinense YUAN-3]
Length = 173
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 90/195 (46%), Gaps = 32/195 (16%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F++ G + + GL+GE+ V+P D P+ G L E K+ D R H
Sbjct: 6 FLETGKIVATQGLRGEVRVQPWCDSPDFLLQFGGF------FLDGEGKNYRKVTDARVH- 58
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRP--ELEDGEFYTRDLVGMRVVMKETGE 194
+ +L FEG +TVE A L+ L DR +L +G + +DL+GM VV G
Sbjct: 59 -KHMAVLKFEGAETVEDAMALLRRVLYI---DRKTVDLPEGSHFEQDLIGMDVVDAGDGH 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G + V +GAND+ V +DA+G+ V IP + ++V VD
Sbjct: 115 AYGKLTEVLRTGANDVYTV-------------------TDAAGKEVLIPAIPDVVREVDT 155
Query: 255 NGREMQITPPKGLLE 269
+ M ITP KGL +
Sbjct: 156 DAGVMHITPLKGLFD 170
>gi|423612059|ref|ZP_17587920.1| ribosome maturation factor rimM [Bacillus cereus VD107]
gi|401247066|gb|EJR53410.1| ribosome maturation factor rimM [Bacillus cereus VD107]
Length = 171
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWNEK-GTDYL-TVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|377809755|ref|YP_005004976.1| 16S rRNA processing protein RimM [Pediococcus claussenii ATCC
BAA-344]
gi|361056496|gb|AEV95300.1| 16S rRNA processing protein RimM [Pediococcus claussenii ATCC
BAA-344]
Length = 169
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 100/193 (51%), Gaps = 25/193 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GL+GEI V TDFPE RF + L G + +++V + R
Sbjct: 1 MEYFNVGKIVNTQGLRGEIKVISQTDFPEERFASGSILDLFN---GDQKVQQVVIKHSRI 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G ++IL E D++ + G +L E ELE+G+FY +++G++V+ ++ GE
Sbjct: 58 NKG--TYILKLENFDSINEVEKFKGYSLKIAEDQLDELEEGQFYFHEIIGLKVIDQQRGE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G++ ++ GAND+ V +G+ + +P+++ ++ V+
Sbjct: 116 -IGSIKDILPYGANDVWVV-------------------DTGNGKELLLPYIKSVILKVNT 155
Query: 255 NGREMQITPPKGL 267
+ E+ + P+GL
Sbjct: 156 DQNEVLVDIPEGL 168
>gi|237800085|ref|ZP_04588546.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022940|gb|EGI02997.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 179
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K ++ +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVVKLKGLDDREEARLLSGYDICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|261419400|ref|YP_003253082.1| 16S rRNA-processing protein RimM [Geobacillus sp. Y412MC61]
gi|297530625|ref|YP_003671900.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|319766215|ref|YP_004131716.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
gi|261375857|gb|ACX78600.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC61]
gi|297253877|gb|ADI27323.1| 16S rRNA processing protein RimM [Geobacillus sp. C56-T3]
gi|317111081|gb|ADU93573.1| 16S rRNA processing protein RimM [Geobacillus sp. Y412MC52]
Length = 172
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RERDTEPIEVTVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ G+ L E EL +GE+Y +++G VV E GE
Sbjct: 59 VHKSFDLLSFEGYDSINDVERFKGAMLKVPESQLGELAEGEYYFHEIIGCTVV-TEGGET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + GAND+ V +GSE IP+++E+V VD
Sbjct: 118 IGAVKEILTPGANDVW------VVRREDGSE-------------ALIPYIDEVVLHVDPE 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 RKTIIIRPMEGLLE 172
>gi|56419735|ref|YP_147053.1| 16S rRNA-processing protein RimM [Geobacillus kaustophilus HTA426]
gi|67461272|sp|Q5L0P5.1|RIMM_GEOKA RecName: Full=Ribosome maturation factor RimM
gi|56379577|dbj|BAD75485.1| 16S rRNA processing protein [Geobacillus kaustophilus HTA426]
Length = 175
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 7 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RERDTEPIEVTVKSHR 61
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ G+ L E EL +GE+Y +++G VV E GE
Sbjct: 62 VHKSFDLLSFEGYDSINDVERFKGAMLKVPESQLGELAEGEYYFHEIIGCTVV-TEGGET 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + GAND+ V +GSE IP+++E+V VD
Sbjct: 121 IGAVKEILTPGANDVW------VVRREDGSE-------------ALIPYIDEVVLHVDPE 161
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 162 RKTIIIRPMEGLLE 175
>gi|257867551|ref|ZP_05647204.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257873880|ref|ZP_05653533.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
gi|257801607|gb|EEV30537.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC30]
gi|257808044|gb|EEV36866.1| ribosome maturation factor rimM [Enterococcus casseliflavus EC10]
Length = 174
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ R + L RE + LI
Sbjct: 3 EYLNVGKIVNTHGIRGEVRVISQTDFPEERY-----RKGAELTLFRENKEPLPLIVSGHR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +LTFEG + P L + D +L + EFY +++G+ VV +E G +
Sbjct: 58 KHKNFDLLTFEGYPNINDVEPFRNGILKVTKDDLVDLAENEFYYHEIIGLEVV-EEDGTV 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V +G ++A IP++E +V +D+
Sbjct: 117 IGKVKEILSPGANDVWVVQ-------RKGKKDA------------LIPYIESVVHTIDLE 157
Query: 256 GREMQITPPKGLLE 269
++ + P+GLL+
Sbjct: 158 NGQVTVEIPEGLLD 171
>gi|348169289|ref|ZP_08876183.1| 16S rRNA processing protein [Saccharopolyspora spinosa NRRL 18395]
Length = 179
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + VG V HG++GE+ V+ TD PELRF PG+ L Q G + + + R+
Sbjct: 6 LETLAVGRVVRPHGIRGELVVEVLTDSPELRFA-PGSV-LGVQRRGVVRAQNLTVTAARQ 63
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETG 193
H G+ ++ EG++ E A L G L R P + EF+ +L G+RV + +G
Sbjct: 64 HAGR--LLVRAEGVEGREAAEDLRGVLLTVRSDVLEPTGDPDEFHDHELTGLRVELV-SG 120
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ VG V V ++ A +LL V A GR V +PFV EIVP VD
Sbjct: 121 DEVGAVGEVLHTPAGELLAV-------------------RTADGREVLVPFVAEIVPEVD 161
Query: 254 MNGREMQITPPKGLLE 269
+ + + PP+GLL+
Sbjct: 162 LAAGRLVVDPPEGLLD 177
>gi|42782934|ref|NP_980181.1| 16S rRNA-processing protein RimM [Bacillus cereus ATCC 10987]
gi|49186692|ref|YP_029944.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. Sterne]
gi|49481628|ref|YP_037903.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217961262|ref|YP_002339830.1| 16S rRNA-processing protein RimM [Bacillus cereus AH187]
gi|222097287|ref|YP_002531344.1| 16S rRNA-processing protein rimm [Bacillus cereus Q1]
gi|225865823|ref|YP_002751201.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228916479|ref|ZP_04080045.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928890|ref|ZP_04091922.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935156|ref|ZP_04097983.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947561|ref|ZP_04109851.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228986985|ref|ZP_04147111.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229092884|ref|ZP_04224018.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|229123356|ref|ZP_04252560.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|229140485|ref|ZP_04269040.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|229157418|ref|ZP_04285496.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|229186082|ref|ZP_04313251.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|229197952|ref|ZP_04324667.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|254720890|ref|ZP_05182681.1| 16S rRNA-processing protein RimM [Bacillus anthracis str. A1055]
gi|301055332|ref|YP_003793543.1| 16S rRNA-processing protein [Bacillus cereus biovar anthracis str.
CI]
gi|375285765|ref|YP_005106204.1| 16S rRNA processing protein RimM [Bacillus cereus NC7401]
gi|376267738|ref|YP_005120450.1| 16S rRNA processing protein RimM [Bacillus cereus F837/76]
gi|384181655|ref|YP_005567417.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|402556037|ref|YP_006597308.1| 16S rRNA-processing protein RimM [Bacillus cereus FRI-35]
gi|423353544|ref|ZP_17331171.1| ribosome maturation factor rimM [Bacillus cereus IS075]
gi|423374361|ref|ZP_17351699.1| ribosome maturation factor rimM [Bacillus cereus AND1407]
gi|423550409|ref|ZP_17526736.1| ribosome maturation factor rimM [Bacillus cereus ISP3191]
gi|423567263|ref|ZP_17543510.1| ribosome maturation factor rimM [Bacillus cereus MSX-A12]
gi|423574552|ref|ZP_17550671.1| ribosome maturation factor rimM [Bacillus cereus MSX-D12]
gi|423604531|ref|ZP_17580424.1| ribosome maturation factor rimM [Bacillus cereus VD102]
gi|59798280|sp|Q6HEX3.1|RIMM_BACHK RecName: Full=Ribosome maturation factor RimM
gi|59798339|sp|Q732M8.1|RIMM_BACC1 RecName: Full=Ribosome maturation factor RimM
gi|209573750|sp|A0RHL5.2|RIMM_BACAH RecName: Full=Ribosome maturation factor RimM
gi|226694910|sp|B7HLH5.1|RIMM_BACC7 RecName: Full=Ribosome maturation factor RimM
gi|254797743|sp|C1EP66.1|RIMM_BACC3 RecName: Full=Ribosome maturation factor RimM
gi|254797744|sp|B9IVD1.1|RIMM_BACCQ RecName: Full=Ribosome maturation factor RimM
gi|42738861|gb|AAS42789.1| 16S rRNA processing protein RimM [Bacillus cereus ATCC 10987]
gi|49180619|gb|AAT55995.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Sterne]
gi|49333184|gb|AAT63830.1| 16S rRNA processing protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|217067406|gb|ACJ81656.1| 16S rRNA processing protein RimM [Bacillus cereus AH187]
gi|221241345|gb|ACM14055.1| 16S rRNA processing protein [Bacillus cereus Q1]
gi|225790577|gb|ACO30794.1| 16S rRNA processing protein RimM [Bacillus cereus 03BB102]
gi|228585531|gb|EEK43634.1| Ribosome maturation factor rimM [Bacillus cereus m1293]
gi|228597258|gb|EEK54909.1| Ribosome maturation factor rimM [Bacillus cereus BGSC 6E1]
gi|228626145|gb|EEK82894.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 4342]
gi|228643046|gb|EEK99322.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST26]
gi|228660132|gb|EEL15768.1| Ribosome maturation factor rimM [Bacillus cereus 95/8201]
gi|228690506|gb|EEL44289.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-42]
gi|228772763|gb|EEM21203.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228812081|gb|EEM58412.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824521|gb|EEM70326.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830697|gb|EEM76302.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843058|gb|EEM88140.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377501|gb|ADK06405.1| 16S rRNA-processing protein [Bacillus cereus biovar anthracis str.
CI]
gi|324327739|gb|ADY22999.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|358354292|dbj|BAL19464.1| 16S rRNA processing protein RimM [Bacillus cereus NC7401]
gi|364513538|gb|AEW56937.1| 16S rRNA processing protein RimM [Bacillus cereus F837/76]
gi|401089357|gb|EJP97528.1| ribosome maturation factor rimM [Bacillus cereus IS075]
gi|401094273|gb|EJQ02355.1| ribosome maturation factor rimM [Bacillus cereus AND1407]
gi|401190025|gb|EJQ97075.1| ribosome maturation factor rimM [Bacillus cereus ISP3191]
gi|401212077|gb|EJR18823.1| ribosome maturation factor rimM [Bacillus cereus MSX-D12]
gi|401214351|gb|EJR21081.1| ribosome maturation factor rimM [Bacillus cereus MSX-A12]
gi|401245151|gb|EJR51509.1| ribosome maturation factor rimM [Bacillus cereus VD102]
gi|401797247|gb|AFQ11106.1| 16S rRNA-processing protein RimM [Bacillus cereus FRI-35]
Length = 171
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPF--PVKITSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ V + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEVLSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|313884836|ref|ZP_07818588.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619527|gb|EFR30964.1| 16S rRNA processing protein RimM [Eremococcus coleocola
ACS-139-V-Col8]
Length = 175
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +G V + HG++G+I V TDFPE RF + ++ + + + +V ++D R+
Sbjct: 1 MEYYRIGRVVNTHGIRGQIKVIADTDFPESRFASGNKLYILKD---DQALAQVTVLDSRQ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
G ++IL+FE D + Q GS L ++ ELED +Y ++G+ VV + G
Sbjct: 58 AKG--TYILSFEEFDNINQVEGFKGSWLAIDSSNQEELEDDVYYHHQIIGLEVVTHQ-GL 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + + G+ND V V++ E + A IP+++++V VD+
Sbjct: 115 KLGKIKEILQLGSND---------VWVVKRHENNKADA--------LIPYIDDVVKEVDL 157
Query: 255 NGREMQITPPKGLLE 269
++ I+ +GL++
Sbjct: 158 EKGQVIISLMEGLID 172
>gi|257870307|ref|ZP_05649960.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
gi|357050572|ref|ZP_09111770.1| ribosome maturation factor rimM [Enterococcus saccharolyticus 30_1]
gi|257804471|gb|EEV33293.1| ribosome maturation factor rimM [Enterococcus gallinarum EG2]
gi|355381225|gb|EHG28352.1| ribosome maturation factor rimM [Enterococcus saccharolyticus 30_1]
Length = 174
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F++VG + + HG++GE+ V TDFPE R+ R ++ L RE ++L
Sbjct: 3 EFLNVGKIVNTHGIRGEVRVISQTDFPEERY-----RKGQRLTLFRENKAPLELTVAGHR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +LTFEG T+ PL L + + EL + E+Y +++G+ V+ ++ EL
Sbjct: 58 KHKNFDLLTFEGYPTINDVEPLRDGILKVSKDELSELTENEYYYHEIIGLTVIDEQAREL 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G + + + GAND+ V +G ++A IP++E +V +D++
Sbjct: 118 -GKIKEILSPGANDVWVVQ-------RKGKKDA------------LIPYIESVVKQIDLD 157
Query: 256 GREMQITPPKGLLE 269
E+ I P+GLL+
Sbjct: 158 KGEVHIEIPEGLLD 171
>gi|420262081|ref|ZP_14764724.1| 16S rRNA processing protein RimM [Enterococcus sp. C1]
gi|394771103|gb|EJF50887.1| 16S rRNA processing protein RimM [Enterococcus sp. C1]
Length = 174
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ R + L RE + LI
Sbjct: 3 EYLNVGKIVNTHGIRGEVRVISQTDFPEERY-----RKGAELTLFRENKEPITLIVSGHR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ ++TFEG + P L + D +L + EFY +++G+ VV +E G +
Sbjct: 58 KHKNFDLVTFEGYSNINDVEPFRNGILKVTKDDLVDLAENEFYYHEIIGLEVV-EEDGTI 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V +G ++A IP++E +V +D+
Sbjct: 117 IGKVKEILSPGANDVWVVQ-------RKGKKDA------------LIPYIESVVHTIDLE 157
Query: 256 GREMQITPPKGLLE 269
++ + P+GLL+
Sbjct: 158 NGQVIVEIPEGLLD 171
>gi|290893076|ref|ZP_06556065.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|386008565|ref|YP_005926843.1| 16S rRNA processing protein [Listeria monocytogenes L99]
gi|404408237|ref|YP_006690952.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2376]
gi|290557436|gb|EFD90961.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
J2-071]
gi|307571375|emb|CAR84554.1| 16S rRNA processing protein [Listeria monocytogenes L99]
gi|404242386|emb|CBY63786.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2376]
Length = 169
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 117 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|117928766|ref|YP_873317.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
gi|171460818|sp|A0LV71.1|RIMM_ACIC1 RecName: Full=Ribosome maturation factor RimM
gi|117649229|gb|ABK53331.1| 16S rRNA processing protein RimM [Acidothermus cellulolyticus 11B]
Length = 176
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 91/194 (46%), Gaps = 30/194 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG+ GE+ V+ TD P+ RF VL +T + + R H G
Sbjct: 12 VAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGA-------VLTTDTGVTLTVQRTRWHSG 64
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ F GID A L G L A +R ED E+Y L+GMRV TG+ +
Sbjct: 65 R--LLVRFAGIDDRTTAEDLRGRVLFAEVDERVRPEDPEEYYDYQLIGMRV-ETVTGQEI 121
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V V + D+L + S+ DA ++PFV +VP VD++
Sbjct: 122 GVVREVLHLPGQDVLAI--------------ERSADGDA-----FVPFVAALVPEVDVDQ 162
Query: 257 REMQITPPKGLLEL 270
R ++I PP GLLEL
Sbjct: 163 RRLRIDPPPGLLEL 176
>gi|423452857|ref|ZP_17429710.1| ribosome maturation factor rimM [Bacillus cereus BAG5X1-1]
gi|423470056|ref|ZP_17446800.1| ribosome maturation factor rimM [Bacillus cereus BAG6O-2]
gi|423558595|ref|ZP_17534897.1| ribosome maturation factor rimM [Bacillus cereus MC67]
gi|401139416|gb|EJQ46978.1| ribosome maturation factor rimM [Bacillus cereus BAG5X1-1]
gi|401191863|gb|EJQ98885.1| ribosome maturation factor rimM [Bacillus cereus MC67]
gi|402437308|gb|EJV69332.1| ribosome maturation factor rimM [Bacillus cereus BAG6O-2]
Length = 221
Score = 81.3 bits (199), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 54 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEK-GTDYL-TVKVTAHRQH- 110
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 111 --KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 168 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 208
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 209 NKLVTIHVMEGLL 221
>gi|447918170|ref|YP_007398738.1| 16S rRNA-processing protein RimM [Pseudomonas poae RE*1-1-14]
gi|445202033|gb|AGE27242.1| 16S rRNA-processing protein RimM [Pseudomonas poae RE*1-1-14]
Length = 178
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+
Sbjct: 114 VI-DQLGQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTG 157
Query: 247 EIVPIVDMNGREMQI 261
V VD+ EM++
Sbjct: 158 HCVLAVDLAAGEMKV 172
>gi|217964055|ref|YP_002349733.1| 16S rRNA-processing protein RimM [Listeria monocytogenes HCC23]
gi|386027172|ref|YP_005947948.1| putative 16S rRNA processing protein [Listeria monocytogenes M7]
gi|254797753|sp|B8DDW0.1|RIMM_LISMH RecName: Full=Ribosome maturation factor RimM
gi|217333325|gb|ACK39119.1| 16S rRNA processing protein RimM [Listeria monocytogenes HCC23]
gi|336023753|gb|AEH92890.1| putative 16S rRNA processing protein [Listeria monocytogenes M7]
Length = 172
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 120 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|138894721|ref|YP_001125174.1| 16S rRNA-processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
gi|166226443|sp|A4IM75.1|RIMM_GEOTN RecName: Full=Ribosome maturation factor RimM
gi|134266234|gb|ABO66429.1| 16S rRNA processing protein RimM [Geobacillus thermodenitrificans
NG80-2]
Length = 175
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 7 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RECDTEPIEVTVKSHR 61
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ P G+ L E EL +GE+Y +++ VV E GE
Sbjct: 62 VHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVV-TEAGET 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + GAND+ V +DA IP+++++V VD
Sbjct: 121 IGKVKEILTPGANDVWVVR--------------RQDGTDA-----LIPYIDDVVMHVDPE 161
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 162 RKIIIIRPMEGLLE 175
>gi|423097142|ref|ZP_17084938.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Q2-87]
gi|397886635|gb|EJL03118.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Q2-87]
Length = 178
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 31/190 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG +YSVHG++GE+ V FT P L + L RE ++++V+L+ G
Sbjct: 10 DLIVVGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGSVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R + K + + +D E+AR L G + PEL DGE+Y +LVG++V+
Sbjct: 62 RGN--DKFLVAKLKDLDDREEARLLAGYEICVPRNLFPELTDGEYYWYELVGLKVI-DHL 118
Query: 193 GELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G+L+G + ++ +G+ND++ V C S+ D RL +P+ E+ V
Sbjct: 119 GQLLGKIDHLLETGSNDVMVVKPCIGSL--------------DDRERL--LPYTEQCVLA 162
Query: 252 VDMNGREMQI 261
VD+ EM++
Sbjct: 163 VDLEAGEMKV 172
>gi|374702708|ref|ZP_09709578.1| 16S rRNA-processing protein RimM [Pseudomonas sp. S9]
Length = 178
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 25/193 (12%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVK 128
T A D V +G + SVHG++G++ V TD + P RW LR+ +++V+
Sbjct: 4 TPAPAEDLVVLGKIVSVHGVKGDVKVYSFTDPIDNVLDYP--RWTLRRD----NEVKQVE 57
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ GR K + +G+D E AR G + + PEL DGEFY L G++V+
Sbjct: 58 VASGRLQ--GKVLVAKLKGLDDREVARTYAGFEICVPRSELPELTDGEFYWYQLEGLKVI 115
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
+ G+L+G + ++F +GAND++ V +A + + D RL +P+ E+
Sbjct: 116 -DQAGQLLGKIDHLFETGANDVMVV-------------KACADSLDDRERL--LPYTEQC 159
Query: 249 VPIVDMNGREMQI 261
V +D++ EM++
Sbjct: 160 VLSIDLSAGEMRV 172
>gi|453078024|ref|ZP_21980758.1| 16S rRNA-processing protein RimM [Rhodococcus triatomae BKS 15-14]
gi|452757659|gb|EME16061.1| 16S rRNA-processing protein RimM [Rhodococcus triatomae BKS 15-14]
Length = 175
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 33/196 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLID-----GRE 134
VG V HG++GE++V+ TD P LRF LR GR+ R+ KL D RE
Sbjct: 5 VGRVAKSHGIRGELAVEIRTDEPGLRFAVGAV--LR----GRKP-RDRKLTDYTVEAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETG 193
H G+ +L +G+D A + G+ + D P +D + FY +L G+ V + + G
Sbjct: 58 HSGR--LLLRLKGVDDRNAADAMRGTLFVVDSADLPPSDDPDAFYDHELEGLEVRLAD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+VGTV V +S A +LL V A SG ++ +PFV IVP+V
Sbjct: 115 TVVGTVNEVLHSAAGELLSV----------------RPAGAESGEIL-VPFVTAIVPVVS 157
Query: 254 MNGREMQITPPKGLLE 269
+ ++I PP+GLL+
Sbjct: 158 VADGYVEIDPPEGLLD 173
>gi|196247660|ref|ZP_03146362.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
gi|196212444|gb|EDY07201.1| 16S rRNA processing protein RimM [Geobacillus sp. G11MC16]
Length = 173
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ ++ RE E + + H
Sbjct: 5 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIF-----RECDTEPIEVTVKSHR 59
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L+FEG D++ P G+ L E EL +GE+Y +++ VV E GE
Sbjct: 60 VHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVV-TEAGET 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + GAND+ V +DA IP+++++V VD
Sbjct: 119 IGKVKEILTPGANDVWVVR--------------RQDGTDA-----LIPYIDDVVMHVDPE 159
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 160 RKIIIIRPMEGLLE 173
>gi|423582052|ref|ZP_17558163.1| ribosome maturation factor rimM [Bacillus cereus VD014]
gi|401212931|gb|EJR19672.1| ribosome maturation factor rimM [Bacillus cereus VD014]
Length = 171
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VKL R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEK-GTDYL-PVKLTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|255325256|ref|ZP_05366362.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
gi|255297821|gb|EET77132.1| 16S rRNA processing protein RimM [Corynebacterium
tuberculostearicum SK141]
Length = 165
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 38/195 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTP----GTRWLRQQVLGRETIREVKLIDGREH 135
+G V HG++GE+ V+ +TD PE+RF GT+ ++ L TI+ V R H
Sbjct: 5 IGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHTL---TIKAV-----RSH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++TFE I A L G+ A D +D FY +L G+RV+++ GE
Sbjct: 57 KGR--LLVTFEEIKDRTVADSLRGTKFFAAPLDS---DDDGFYDHELEGLRVLLE--GEE 109
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V + G+ DLL V ++ S+EA IPFV IVP V++
Sbjct: 110 IGEVTSVIHGGSQDLLEVE-------LDNSKEA------------LIPFVHAIVPEVNLE 150
Query: 256 GREMQITPPKGLLEL 270
I PP+GLL+L
Sbjct: 151 AGTCTIDPPEGLLDL 165
>gi|52141646|ref|YP_085183.1| 16S rRNA-processing protein RimM [Bacillus cereus E33L]
gi|59798170|sp|Q636I4.1|RIMM_BACCZ RecName: Full=Ribosome maturation factor RimM
gi|51975115|gb|AAU16665.1| 16S rRNA processing protein [Bacillus cereus E33L]
Length = 171
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVVSLTDFPEERYKVGNTLYISNEKGGEPF--PVKITSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ V + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEVLSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|433647057|ref|YP_007292059.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis JS623]
gi|433296834|gb|AGB22654.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis JS623]
Length = 171
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 69/198 (34%), Positives = 94/198 (47%), Gaps = 29/198 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-R 133
+D V VG V HG+ GEI V+ TD P++RF PG+ + G R V ID R
Sbjct: 1 MDLV-VGRVVRAHGVAGEIVVEIRTDDPDIRF-APGSSLRGKPSRGGPESRYV--IDSVR 56
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKET 192
+H G+ ++ EG+ A L G+ + D P +ED EFY L G+RVV
Sbjct: 57 DHGGR--LLVRLEGVADRNAADALRGTVFIVDSADLPPIEDPDEFYDHQLEGLRVVTTAG 114
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G +G+V V ++ A +LL SV EG V +PFV IV V
Sbjct: 115 GA-IGSVAEVLHTAAGELL------SVRSDEGE--------------VLVPFVSAIVTSV 153
Query: 253 DMNGREMQITPPKGLLEL 270
+ + + I PP GLLEL
Sbjct: 154 SLADQTIVIDPPDGLLEL 171
>gi|66044531|ref|YP_234372.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
B728a]
gi|422671286|ref|ZP_16730652.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aceris
str. M302273]
gi|75503052|sp|Q4ZWY8.1|RIMM_PSEU2 RecName: Full=Ribosome maturation factor RimM
gi|63255238|gb|AAY36334.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. syringae
B728a]
gi|330969026|gb|EGH69092.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aceris
str. M302273]
Length = 179
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|422616410|ref|ZP_16685116.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. japonica
str. M301072]
gi|422638348|ref|ZP_16701779.1| 16S rRNA-processing protein RimM [Pseudomonas syringae Cit 7]
gi|422665047|ref|ZP_16724920.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|424066476|ref|ZP_17803942.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|424071132|ref|ZP_17808558.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|443645061|ref|ZP_21128911.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. syringae
B64]
gi|330895931|gb|EGH28215.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. japonica
str. M301072]
gi|330950743|gb|EGH51003.1| 16S rRNA-processing protein RimM [Pseudomonas syringae Cit 7]
gi|330975466|gb|EGH75532.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|407999443|gb|EKG39827.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|408002266|gb|EKG42526.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|443285078|gb|ELS44083.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. syringae
B64]
Length = 179
Score = 80.5 bits (197), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|433608839|ref|YP_007041208.1| 16S rRNA processing protein RimM [Saccharothrix espanaensis DSM
44229]
gi|407886692|emb|CCH34335.1| 16S rRNA processing protein RimM [Saccharothrix espanaensis DSM
44229]
Length = 172
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG+ GE++V TD PELRF G+ + + L T R V + R H G
Sbjct: 3 VVVGRVAKAHGITGELAVDVRTDSPELRFAH-GSALIAK--LRDGTSRTVTVAAARNHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ LLA D P D EFY +L G+R + + G +
Sbjct: 60 R--LLVRFEEVLTRDVAETLRGTLLLASTDDLPPTGDPDEFYDHELEGLRAELLD-GTEI 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V + + +LL V+ EG E + +PFV +IVP VD+ G
Sbjct: 117 GKVREIAHGPGGELL------VVDRAEGGE-------------LLVPFVRQIVPTVDVRG 157
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 158 GRVVLDPPEGLLD 170
>gi|314936599|ref|ZP_07843946.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
gi|313655218|gb|EFS18963.1| 16S rRNA processing protein RimM [Staphylococcus hominis subsp.
hominis C80]
Length = 166
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF + RF PG + V E+ + R H G
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRF-QPGEVLI---VNHHHNEIEMTITSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + G L R+ + EL + EFY D++G V +T +
Sbjct: 59 FH--MLKFEGINHINDVEQYKGDYLFQERDHEDIELNENEFYYSDIIGCTVFNNDTP--I 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++ ++V VD+
Sbjct: 115 GRVINIFETGAND---------VWVVKGDKE------------YLIPYIADVVKEVDVEH 153
Query: 257 REMQITPPKGLLE 269
+ ++IT +GLLE
Sbjct: 154 KTIRITSMEGLLE 166
>gi|65321170|ref|ZP_00394129.1| COG0806: RimM protein, required for 16S rRNA processing [Bacillus
anthracis str. A2012]
Length = 171
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G VK R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPF--PVKXTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ V + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEVLSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVTEGLL 171
>gi|30021930|ref|NP_833561.1| 16S rRNA-processing protein RimM [Bacillus cereus ATCC 14579]
gi|29897486|gb|AAP10762.1| 16S rRNA processing protein rimM [Bacillus cereus ATCC 14579]
Length = 188
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 21 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEK-GTDYL-PVKVTSHRQH- 77
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 78 --KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 134
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 135 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 175
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 176 NKLVTIHVMEGLL 188
>gi|225180941|ref|ZP_03734389.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
gi|225168422|gb|EEG77225.1| 16S rRNA processing protein RimM [Dethiobacter alkaliphilus AHT 1]
Length = 169
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV--KLIDGREH 135
V +G V + HG++G + V+P +D PE R ++ + G R+V + GR
Sbjct: 5 VAIGKVVTTHGVKGGMKVQPLSDNPE-RIKELIRVFVEKD--GHSAARDVVEAFVHGR-- 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+W++ EGID+ + AR LVG+ L +R L + +Y ++G+ V + G
Sbjct: 60 ----AWVIRLEGIDSCDAARELVGAMLTIPISERLPLPENSYYLDQIIGLDVYTVD-GTY 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G+++NV +G+ND V V+E + A GR V IP ++ +V +D++
Sbjct: 115 LGSIINVLETGSND---------VYVVE---------NKADGRQVLIPALKAVVKSIDLD 156
Query: 256 GREMQITPPKGLL 268
M++ PP+GLL
Sbjct: 157 TGRMEVDPPEGLL 169
>gi|152976208|ref|YP_001375725.1| 16S rRNA-processing protein RimM [Bacillus cytotoxicus NVH 391-98]
gi|189040125|sp|A7GRH2.1|RIMM_BACCN RecName: Full=Ribosome maturation factor RimM
gi|152024960|gb|ABS22730.1| 16S rRNA processing protein RimM [Bacillus cytotoxicus NVH 391-98]
Length = 171
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ T ++ + G E + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEVRVISRTDFPEERYKVGNTLYIWGEK-GTEPL-PVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V + GS L E EL +GE+Y +++G +VV E GE
Sbjct: 61 --KTFDLLTFEGYSNVNEVEKFKGSLLKVPEEQLGELAEGEYYYHEVIGCKVV-TENGEE 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP++++IV V++
Sbjct: 118 LGTITEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDIVLQVNVE 158
Query: 256 GREMQITPPKGLL 268
+++ I +GLL
Sbjct: 159 QKQVTIHVMEGLL 171
>gi|306836396|ref|ZP_07469374.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
gi|304567756|gb|EFM43343.1| 16S rRNA processing protein RimM [Corynebacterium accolens ATCC
49726]
Length = 165
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 95/193 (49%), Gaps = 34/193 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG--REHPG 137
+G V HG++GE+ V+P+TD PE+RF + +++ GR+ +E +L R H G
Sbjct: 5 IGRVIKSHGIKGEVVVEPTTDEPEVRFA------VGEKLQGRQGRKEHELTISAVRSHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++T + I QA L G+ A E +D FY +L G+RV+ GE +G
Sbjct: 59 R--LLVTCKEIADRTQADSLRGTQFFAAP---LEDDDEGFYDHELEGLRVI--RDGEDIG 111
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
VV+V + + DLL V ASG +PFV IVP VD+
Sbjct: 112 AVVSVVHGPSQDLLEVEL-------------------ASGSSALVPFVHAIVPEVDVEAG 152
Query: 258 EMQITPPKGLLEL 270
I PP+GLL+L
Sbjct: 153 TCTIQPPEGLLDL 165
>gi|423359122|ref|ZP_17336625.1| ribosome maturation factor rimM [Bacillus cereus VD022]
gi|401084994|gb|EJP93240.1| ribosome maturation factor rimM [Bacillus cereus VD022]
Length = 171
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 28/194 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET-IREVKLIDGREH 135
+ +VG + + HG++GEI V TDFPE R+ T ++ + ++T VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE---KDTDYLPVKVTSHRQH 60
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LTFEG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 ---KTFDLLTFEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 117 ALGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNI 157
Query: 255 NGREMQITPPKGLL 268
+ + I +GLL
Sbjct: 158 ENKLVTIHVMEGLL 171
>gi|46908025|ref|YP_014414.1| 16S rRNA-processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47094472|ref|ZP_00232150.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293596406|ref|ZP_05231381.2| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
gi|293597068|ref|ZP_05267001.2| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|405750144|ref|YP_006673610.1| 16S rRNA processing protein [Listeria monocytogenes ATCC 19117]
gi|405753019|ref|YP_006676484.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2378]
gi|59798758|sp|Q71YM3.1|RIMM_LISMF RecName: Full=Ribosome maturation factor RimM
gi|46881295|gb|AAT04591.1| 16S rRNA processing protein RimM [Listeria monocytogenes serotype
4b str. F2365]
gi|47017155|gb|EAL08010.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b
H7858]
gi|293585205|gb|EFF97237.1| ribosome maturation factor rimM [Listeria monocytogenes HPB2262]
gi|293595620|gb|EFG03381.1| ribosome maturation factor rimM [Listeria monocytogenes FSL J1-194]
gi|404219344|emb|CBY70708.1| 16S rRNA processing protein [Listeria monocytogenes ATCC 19117]
gi|404222219|emb|CBY73582.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2378]
Length = 169
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 117 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|46579250|ref|YP_010058.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603187|ref|YP_967587.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|387152635|ref|YP_005701571.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris RCH1]
gi|59798766|sp|Q72DU2.1|RIMM_DESVH RecName: Full=Ribosome maturation factor RimM
gi|166226438|sp|A1VFE4.1|RIMM_DESVV RecName: Full=Ribosome maturation factor RimM
gi|46448664|gb|AAS95317.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563416|gb|ABM29160.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris DP4]
gi|311233079|gb|ADP85933.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris RCH1]
Length = 176
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+++G + HGL+GE+ V D P F GT +L+ GR R VK+ R H
Sbjct: 6 FIEIGLLTRPHGLKGEVCVDYYADSP---FLLEGTVYLKA---GRAAPRPVKVQSMRMHK 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++ FEG++ A L G +L E PEL++ E Y +L G+ VV+ E+GE +
Sbjct: 60 GRP--LVIFEGVNDRTAAELLRGHVMLVPEDTLPELDEDEVYLFELEGISVVIDESGEHL 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + + Y + VI + G+ V P V +D++
Sbjct: 118 GVI---------ERIDTDAYQEIWVIRTPQ----------GKEVLFPAAAPFVLDIDLDS 158
Query: 257 REMQITPPKGLLELNL 272
R +I PP GLL++ L
Sbjct: 159 RTARIAPPPGLLDIYL 174
>gi|336053928|ref|YP_004562215.1| Ribosome maturation factor rimM [Lactobacillus kefiranofaciens ZW3]
gi|333957305|gb|AEG40113.1| Ribosome maturation factor rimM [Lactobacillus kefiranofaciens ZW3]
Length = 171
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF L++ TI++ +
Sbjct: 1 MEYFDVAKILTTHGLTGEVKVNVITDFPEERFAEGMHLALKENTDRILTIKKSRSF---- 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
++ W+L F + ++ A L G L+ E DR EL + +Y +D++G V+ E+ +
Sbjct: 57 ---KQFWLLQFNEVTDIDAAEKLRGKVLVVSETDRGELPNNVYYYKDILGCDVIDNESEK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
++G + ++ + GAND+ V + + + WIP + +++ VD+
Sbjct: 114 ILGKITDIQSPGANDIWLV-------------------HEKNDKEYWIPNIADVIKSVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 PDKKIYVDLMEGL 167
>gi|407983111|ref|ZP_11163772.1| 16S rRNA processing protein RimM [Mycobacterium hassiacum DSM
44199]
gi|407375394|gb|EKF24349.1| 16S rRNA processing protein RimM [Mycobacterium hassiacum DSM
44199]
Length = 177
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V+ TD PE RF PG + G RE + R
Sbjct: 1 MDLV-VGRVVKAHGIAGEVVVEIRTDDPEARFA-PGVTLRGKPSRGDGPQREFVIESSRP 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ G++ + A L G+ + D P +ED EFY L G++VV + G
Sbjct: 59 HSGR--LLVRLRGVNDRDAADALRGTLFVIDSADLPPIEDPDEFYDHQLEGLQVVTVD-G 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V V ++ A +LL V S V+ +P V EIV V
Sbjct: 116 RPVGAVTEVVHTAAGELLAVRTESDDEVL-------------------VPLVSEIVTSVS 156
Query: 254 MNGREMQITPPKGLLEL 270
+ ++I PP+GLLEL
Sbjct: 157 LEDARIEIDPPEGLLEL 173
>gi|365159381|ref|ZP_09355562.1| ribosome maturation factor rimM [Bacillus sp. 7_6_55CFAA_CT2]
gi|363625379|gb|EHL76420.1| ribosome maturation factor rimM [Bacillus sp. 7_6_55CFAA_CT2]
Length = 171
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEK-GTDYL-PVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEVEKFKGSLIKVPEDQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|255522476|ref|ZP_05389713.1| 16S rRNA-processing protein RimM [Listeria monocytogenes FSL
J1-175]
gi|417315441|ref|ZP_12102119.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J1816]
gi|424714670|ref|YP_007015385.1| Ribosome maturation factor RimM [Listeria monocytogenes serotype 4b
str. LL195]
gi|424823554|ref|ZP_18248567.1| Ribosome maturation factor rimM [Listeria monocytogenes str. Scott
A]
gi|328466403|gb|EGF37554.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J1816]
gi|332312234|gb|EGJ25329.1| Ribosome maturation factor rimM [Listeria monocytogenes str. Scott
A]
gi|424013854|emb|CCO64394.1| Ribosome maturation factor RimM [Listeria monocytogenes serotype 4b
str. LL195]
Length = 172
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 120 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|409358259|ref|ZP_11236622.1| 16S rRNA-processing protein RimM [Dietzia alimentaria 72]
Length = 177
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG-RETIREVKLIDGREHPGQ 138
VG V HG++GE+ V+ TD PE RF PG R++ + G + REV + R H G+
Sbjct: 5 VGRVVKAHGIRGELVVEVRTDSPEERFA-PGNRFVGRIGKGLMSSDREVTVEAARSHSGR 63
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVG 197
++ EGI + A G L+ P+ D EF+ LVG+RV + G +G
Sbjct: 64 --LLVRLEGIGDRDAADAARGMLLIVDSDSLPDTNDPDEFHDHQLVGLRV-LDTAGTRLG 120
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V + ++ A +LL + S + + +PFV E+VP VD+
Sbjct: 121 EVTEIMHTPAGELLAIRLESGTDAL-------------------VPFVTEMVPEVDLEAG 161
Query: 258 EMQITPPKGLLELNL 272
I PP+GLL+L +
Sbjct: 162 TCVIDPPEGLLDLEI 176
>gi|357392083|ref|YP_004906924.1| 16S rRNA processing protein RimM [Kitasatospora setae KM-6054]
gi|311898560|dbj|BAJ30968.1| putative 16S rRNA-processing protein RimM [Kitasatospora setae
KM-6054]
Length = 210
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G++SV+ TD PELR +G TI GR H G+
Sbjct: 5 VGKIGRAHGIRGDVSVEVRTDEPELRLGPGAVLLTDPAAIGPLTIES-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGELVG 197
+L F G+ A L G+ L+A E D E D E+Y L+G+ VV+ + G VG
Sbjct: 59 -LLLRFAGVKDRTAAEALRGTMLIA-EIDPEETPDDPDEYYDHQLIGLDVVLAD-GTPVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ V + DLL +V +G+E V +PFVE+IVP++D++ +
Sbjct: 116 ELTEVIHLPYQDLL------TVQRPDGTE-------------VLVPFVEQIVPVIDLDEQ 156
Query: 258 EMQITPPKGLLE 269
+ +TPP GL++
Sbjct: 157 RVVLTPPPGLID 168
>gi|365166722|ref|ZP_09360529.1| 16S rRNA processing protein RimM [Synergistes sp. 3_1_syn1]
gi|363619406|gb|EHL70722.1| 16S rRNA processing protein RimM [Synergistes sp. 3_1_syn1]
Length = 181
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 23/199 (11%)
Query: 69 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK 128
+T + D ++G + VHG++G++ + P TDFPE RF G + L V G+ +R K
Sbjct: 4 KTEGTPEDRCEIGKIVGVHGVRGDMLLLPQTDFPE-RFL--GMKKLDVTVAGK-PMRTFK 59
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ + G+ ++ L +G+++ + A + G+ + + +R +LE+ E++ D++G+ V
Sbjct: 60 VSRIEPYEGKNTFFLRLQGVESRDAAEAMKGAVITIAKDERVDLEEDEYWLDDIIGLAVF 119
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
TGE +G + V +G+ND V V++ S S + IP V ++
Sbjct: 120 DHATGERLGEITEVMYTGSND---------VYVVKTSGGTSKA----------IPAVADV 160
Query: 249 VPIVDMNGREMQITPPKGL 267
+ VD M + P+GL
Sbjct: 161 IKNVDPANGTMTVNIPEGL 179
>gi|70726676|ref|YP_253590.1| 16S rRNA-processing protein RimM [Staphylococcus haemolyticus
JCSC1435]
gi|109893054|sp|Q4L5U1.1|RIMM_STAHJ RecName: Full=Ribosome maturation factor RimM
gi|68447400|dbj|BAE04984.1| probable 16S rRNA processing protein [Staphylococcus haemolyticus
JCSC1435]
Length = 167
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF + RF PG E ++ ++ R H G
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSNSDFTDTRF-QPGEVLTVNHQNHEE---QLTVLSYRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + G L R+ + EL + E+Y D++G V + +
Sbjct: 59 FH--MLKFEGINNINDVEQYKGDYLYQERDHEDIELAENEYYYSDIIG-STVFDNDNQPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V V++G +E IP++ ++V +D+
Sbjct: 116 GRVINIFETGAND---------VWVVKGEKE------------YLIPYIADVVKEIDIEN 154
Query: 257 REMQITPPKGLLE 269
+ ++ITP +GLL+
Sbjct: 155 KTIRITPMEGLLD 167
>gi|422416313|ref|ZP_16493270.1| 16S rRNA processing protein RimM [Listeria innocua FSL J1-023]
gi|313623297|gb|EFR93533.1| 16S rRNA processing protein RimM [Listeria innocua FSL J1-023]
Length = 172
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG+ + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++ N +
Sbjct: 120 EITEILTPGAND---------VWVVKGTDKKEK----------LIPYIADVVKDINTNDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|300780919|ref|ZP_07090773.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
gi|300532626|gb|EFK53687.1| 16S rRNA processing protein RimM [Corynebacterium genitalium ATCC
33030]
Length = 169
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 30/195 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHP 136
+ +G V HG++GE+ V+P D ++ F +VL GR+T +E L P
Sbjct: 3 IRIGRVVKSHGVRGEVVVEPLADDEDIFFA-------EGEVLHGRQTGKERDLTIKSVRP 55
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
QK ++TFE + A L G A +R E D E+Y +L+G++V++ G
Sbjct: 56 HQKRLLVTFEEVADRTAADSLRGMQFFAEPLERDEDSD-EYYDHELIGLKVLLDHAGGTH 114
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V LL V D G+ V +PFV +IVP +D++
Sbjct: 115 IGEVTGVMTMPNRKLLEV--------------------DYHGKEVLVPFVMDIVPEIDLD 154
Query: 256 GREMQITPPKGLLEL 270
+ ITPP+GLLEL
Sbjct: 155 EGYLVITPPEGLLEL 169
>gi|16800973|ref|NP_471241.1| 16S rRNA-processing protein RimM [Listeria innocua Clip11262]
gi|423100908|ref|ZP_17088613.1| 16S rRNA processing protein RimM [Listeria innocua ATCC 33091]
gi|21362865|sp|Q92AL5.1|RIMM_LISIN RecName: Full=Ribosome maturation factor RimM
gi|16414408|emb|CAC97137.1| lin1907 [Listeria innocua Clip11262]
gi|370792550|gb|EHN60414.1| 16S rRNA processing protein RimM [Listeria innocua ATCC 33091]
Length = 172
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG+ + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGLTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++ N +
Sbjct: 120 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKDINTNDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|313896374|ref|ZP_07829927.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
gi|402303312|ref|ZP_10822408.1| 16S rRNA processing protein RimM [Selenomonas sp. FOBRC9]
gi|312975173|gb|EFR40635.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 137
str. F0430]
gi|400378942|gb|EJP31792.1| 16S rRNA processing protein RimM [Selenomonas sp. FOBRC9]
Length = 175
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 31/185 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V + HG+ G++ V P TDFPE RF LR+ V+G E + V++ +E K
Sbjct: 15 IGRVGAPHGIAGDVRVIPLTDFPE-RFAR-----LREVVVGDELLHIVRM---KEQ--GK 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F E+A+ L G L D LE+GE+Y D+VG+ V E G L+G+V
Sbjct: 64 NFLMQFREYPVREEAQRLTGRLLTVARTDAAPLEEGEYYVFDIVGLS-VYDEAGTLLGSV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
NV +G+ND+ V A D GR + IP + +V +D+ G M
Sbjct: 123 ENVIRTGSNDVYAV-----------------RAED--GRELLIPALRSVVRNIDIAGGRM 163
Query: 260 QITPP 264
+ P
Sbjct: 164 DVCLP 168
>gi|440741466|ref|ZP_20920880.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens
BRIP34879]
gi|440371544|gb|ELQ08384.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens
BRIP34879]
Length = 178
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRE-TIREVKLIDG 132
D + +G +YSVHG++GE+ V TD E L++ T W L RE ++++V+L+ G
Sbjct: 10 DLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKT----W----TLKREGSVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R K + +G+D E+AR L G + PEL DGE+Y L G++V+ +
Sbjct: 62 RG--SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLKVI-DQL 118
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ V V
Sbjct: 119 GQLLGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGHCVLAV 163
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 164 DLAAGEMKV 172
>gi|311739730|ref|ZP_07713565.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305546|gb|EFQ81614.1| 16S rRNA processing protein RimM [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 165
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 38/195 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTP----GTRWLRQQVLGRETIREVKLIDGREH 135
+G V HG++GE+ V+ +TD PE+RF GT+ ++ L TI+ V R H
Sbjct: 5 IGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHTL---TIKAV-----RSH 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++TFE I A L G+ A D +D FY +L G+RV+++ GE
Sbjct: 57 KGR--LLVTFEEIKDRTVADSLRGTKFFAAPLDS---DDDGFYDHELEGLRVLLE--GEE 109
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V + G+ DLL + ++ ++EA IPFV IVP V++
Sbjct: 110 IGEVTSVIHGGSQDLLEIK-------LDNNKEA------------LIPFVHAIVPEVNLE 150
Query: 256 GREMQITPPKGLLEL 270
I PP+GLL+L
Sbjct: 151 AGTCTIDPPEGLLDL 165
>gi|378948995|ref|YP_005206483.1| protein RimM [Pseudomonas fluorescens F113]
gi|359759009|gb|AEV61088.1| RimM [Pseudomonas fluorescens F113]
Length = 178
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 31/190 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG +YSVHG++GE+ V FT P L + L RE ++++V+L+ G
Sbjct: 10 DLIVVGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGSVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R + K + + +D E+AR L G + PEL DGE+Y LVG++V+
Sbjct: 62 RGN--DKFLVAKLKDLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLVGLKVI-DHL 118
Query: 193 GELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G+L+G + ++ +G+ND++ V C S+ D RL +P+ E+ V
Sbjct: 119 GQLLGKIDHLLETGSNDVMVVKPCVGSL--------------DDRERL--LPYTEQCVLA 162
Query: 252 VDMNGREMQI 261
VD+ EM++
Sbjct: 163 VDLAAGEMKV 172
>gi|330807706|ref|YP_004352168.1| 16S rRNA processing protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423695493|ref|ZP_17669983.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Q8r1-96]
gi|327375814|gb|AEA67164.1| Putative 16S rRNA processing protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|388009441|gb|EIK70692.1| 16S rRNA processing protein RimM [Pseudomonas fluorescens Q8r1-96]
Length = 178
Score = 79.7 bits (195), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 31/190 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG +YSVHG++GE+ V FT P L + L RE ++++V+L+ G
Sbjct: 10 DLIVVGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGSVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R + K + + +D E+AR L G + PEL DGE+Y LVG++V+
Sbjct: 62 RGN--DKFLVAKLKDLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLVGLKVI-DHL 118
Query: 193 GELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G+L+G + ++ +G+ND++ V C S+ D RL +P+ E+ V
Sbjct: 119 GQLLGKIDHLLETGSNDVMVVKPCVGSL--------------DDRERL--LPYTEQCVLA 162
Query: 252 VDMNGREMQI 261
VD+ EM++
Sbjct: 163 VDLAAGEMKV 172
>gi|259501564|ref|ZP_05744466.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|302191462|ref|ZP_07267716.1| 16S rRNA-processing protein RimM [Lactobacillus iners AB-1]
gi|325911843|ref|ZP_08174247.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
gi|259167082|gb|EEW51577.1| 16S rRNA processing protein RimM [Lactobacillus iners DSM 13335]
gi|325476349|gb|EGC79511.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 143-D]
Length = 173
Score = 79.7 bits (195), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 97/192 (50%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HGL+GE+ VK TDFP+ RF + ++ G + ++ + + R H ++
Sbjct: 7 VGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISA---GDQKVK-MTVETARFH--KQ 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F I+ +++A +V L + D+ +L G +Y L+G+ V ET +G +
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKRKIGIL 120
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ GAND+ + + + G++ WIP + +V VD+ +++
Sbjct: 121 TDIEMPGANDIWEI-------------------TPSKGKIFWIPNISSVVKQVDLVNKKI 161
Query: 260 QITPPKGLLELN 271
++ +GL + N
Sbjct: 162 EVILLEGLRDEN 173
>gi|309804277|ref|ZP_07698354.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|312871868|ref|ZP_07731952.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|312872444|ref|ZP_07732513.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|315653409|ref|ZP_07906331.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
gi|308163680|gb|EFO65950.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
11V1-d]
gi|311092026|gb|EFQ50401.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF
2062A-h1]
gi|311092590|gb|EFQ50950.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 3008A-a]
gi|315489334|gb|EFU78974.1| 16S rRNA processing protein RimM [Lactobacillus iners ATCC 55195]
Length = 173
Score = 79.7 bits (195), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 97/192 (50%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HGL+GE+ VK TDFP+ RF ++ +G + ++ + + R H ++
Sbjct: 7 VGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYIS---VGDQKVK-MTVETARFH--KQ 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F I+ +++A +V L + D+ +L G +Y L+G+ V ET +G +
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKIGIL 120
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ GAND+ + + + G++ WIP + +V VD+ +++
Sbjct: 121 TDIEMPGANDIWEI-------------------TPSKGKIFWIPNISSVVKQVDLVNKKI 161
Query: 260 QITPPKGLLELN 271
++ +GL + N
Sbjct: 162 EVILLEGLRDEN 173
>gi|302525174|ref|ZP_07277516.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
gi|302434069|gb|EFL05885.1| 16S rRNA processing protein RimM [Streptomyces sp. AA4]
Length = 171
Score = 79.7 bits (195), Expect = 5e-12, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE++V TD P+ RF + L + RE+ + REH G
Sbjct: 3 VVVGRIAKAHGIRGELAVDVRTDSPQERFAIGAVVTTK---LRDGSTRELTIAAAREHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ LLA P D EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFEEVLTRDVAETLRGALLLADTDSLPPTGDPDEFYDHELAGLRAELTD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV V +S A +LL + D GR V +PFV IVP+VD+ G
Sbjct: 117 GKVVEVVHSPAGELLEL--------------------DHDGRSVLVPFVRAIVPVVDVAG 156
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 157 GRVVLDPPEGLLD 169
>gi|239622499|ref|ZP_04665530.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|239514496|gb|EEQ54363.1| 16S rRNA processing protein [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 202
Score = 79.7 bits (195), Expect = 5e-12, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF VL + +++G
Sbjct: 8 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDGESEYIVEG-S 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG+D A L G L D + LE E+Y +DL+G+ + E
Sbjct: 60 RTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARLVEGN 119
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG V +V +S A LL + V + G +S D + +PFVE
Sbjct: 120 GLGLPAGQVVGKVADVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVVEKTALVPFVE 174
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D+ + + + PP GL+
Sbjct: 175 ALVPDIDLEEQYLTLDPPGGLI 196
>gi|206972753|ref|ZP_03233683.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218235147|ref|YP_002368643.1| 16S rRNA-processing protein RimM [Bacillus cereus B4264]
gi|228922596|ref|ZP_04085896.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954118|ref|ZP_04116147.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960058|ref|ZP_04121722.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047529|ref|ZP_04193119.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|229071340|ref|ZP_04204563.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|229081097|ref|ZP_04213607.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|229111313|ref|ZP_04240866.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|229129118|ref|ZP_04258091.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|229146413|ref|ZP_04274784.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|229152041|ref|ZP_04280236.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|229180118|ref|ZP_04307462.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|229192011|ref|ZP_04318981.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|296504337|ref|YP_003666037.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
gi|423412353|ref|ZP_17389473.1| ribosome maturation factor rimM [Bacillus cereus BAG3O-2]
gi|423425978|ref|ZP_17403009.1| ribosome maturation factor rimM [Bacillus cereus BAG3X2-2]
gi|423431862|ref|ZP_17408866.1| ribosome maturation factor rimM [Bacillus cereus BAG4O-1]
gi|423437297|ref|ZP_17414278.1| ribosome maturation factor rimM [Bacillus cereus BAG4X12-1]
gi|423503481|ref|ZP_17480073.1| ribosome maturation factor rimM [Bacillus cereus HD73]
gi|423585749|ref|ZP_17561836.1| ribosome maturation factor rimM [Bacillus cereus VD045]
gi|423628935|ref|ZP_17604684.1| ribosome maturation factor rimM [Bacillus cereus VD154]
gi|423635387|ref|ZP_17611040.1| ribosome maturation factor rimM [Bacillus cereus VD156]
gi|423641077|ref|ZP_17616695.1| ribosome maturation factor rimM [Bacillus cereus VD166]
gi|423649705|ref|ZP_17625275.1| ribosome maturation factor rimM [Bacillus cereus VD169]
gi|423656701|ref|ZP_17632000.1| ribosome maturation factor rimM [Bacillus cereus VD200]
gi|449090783|ref|YP_007423224.1| 16S rRNA processing protein RimM [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|33301480|sp|Q819W5.2|RIMM_BACCR RecName: Full=Ribosome maturation factor RimM
gi|226694909|sp|B7HDW5.1|RIMM_BACC4 RecName: Full=Ribosome maturation factor RimM
gi|206732318|gb|EDZ49510.1| 16S rRNA processing protein RimM [Bacillus cereus AH1134]
gi|218163104|gb|ACK63096.1| 16S rRNA processing protein RimM [Bacillus cereus B4264]
gi|228591562|gb|EEK49411.1| Ribosome maturation factor rimM [Bacillus cereus ATCC 10876]
gi|228603327|gb|EEK60804.1| Ribosome maturation factor rimM [Bacillus cereus 172560W]
gi|228631390|gb|EEK88024.1| Ribosome maturation factor rimM [Bacillus cereus m1550]
gi|228637046|gb|EEK93505.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST24]
gi|228654355|gb|EEL10220.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-Cer4]
gi|228672089|gb|EEL27380.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-15]
gi|228702141|gb|EEL54617.1| Ribosome maturation factor rimM [Bacillus cereus Rock4-2]
gi|228711794|gb|EEL63746.1| Ribosome maturation factor rimM [Bacillus cereus F65185]
gi|228723776|gb|EEL75131.1| Ribosome maturation factor rimM [Bacillus cereus AH676]
gi|228799574|gb|EEM46527.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805684|gb|EEM52274.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228837025|gb|EEM82366.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325389|gb|ADH08317.1| 16S rRNA-processing protein [Bacillus thuringiensis BMB171]
gi|401104421|gb|EJQ12398.1| ribosome maturation factor rimM [Bacillus cereus BAG3O-2]
gi|401110725|gb|EJQ18624.1| ribosome maturation factor rimM [Bacillus cereus BAG3X2-2]
gi|401116618|gb|EJQ24456.1| ribosome maturation factor rimM [Bacillus cereus BAG4O-1]
gi|401120452|gb|EJQ28248.1| ribosome maturation factor rimM [Bacillus cereus BAG4X12-1]
gi|401233095|gb|EJR39591.1| ribosome maturation factor rimM [Bacillus cereus VD045]
gi|401268480|gb|EJR74528.1| ribosome maturation factor rimM [Bacillus cereus VD154]
gi|401278138|gb|EJR84074.1| ribosome maturation factor rimM [Bacillus cereus VD156]
gi|401280138|gb|EJR86060.1| ribosome maturation factor rimM [Bacillus cereus VD166]
gi|401282985|gb|EJR88882.1| ribosome maturation factor rimM [Bacillus cereus VD169]
gi|401290442|gb|EJR96136.1| ribosome maturation factor rimM [Bacillus cereus VD200]
gi|402458835|gb|EJV90575.1| ribosome maturation factor rimM [Bacillus cereus HD73]
gi|449024540|gb|AGE79703.1| 16S rRNA processing protein RimM [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 171
Score = 79.7 bits (195), Expect = 5e-12, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNEK-GTDYL-PVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|224003577|ref|XP_002291460.1| hypothetical protein THAPSDRAFT_262862 [Thalassiosira pseudonana
CCMP1335]
gi|220973236|gb|EED91567.1| hypothetical protein THAPSDRAFT_262862, partial [Thalassiosira
pseudonana CCMP1335]
Length = 283
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 45/233 (19%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + HG+ G + + TDF E R PG R ++ R + REV+L++GR
Sbjct: 56 YIELGTIVGAHGVHGMMKLTSITDFSEHRLCQPGIRHIKPP--NRRSPREVQLVEGRPLR 113
Query: 137 GQKS---------WILTFEGIDTVEQARPLVGSTL--LAREGDRPELEDGEFYTRDLVGM 185
+ + +++ + I+ + A L G L L E LE+ E+ DLVG+
Sbjct: 114 SEAATIGTDTNPKYLIRLDHINDRDAALKLRGCVLYSLIEEKVDGLLEEDEYLVSDLVGL 173
Query: 186 RVVMKE-------------------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSE 226
V ++E G ++G+ + DLL V+ S++ +G E
Sbjct: 174 NVYLEEHEDGDSNSRSFEDLFVGFIRGVVMGSEMCAIPGLGQDLLEVVL-PSIHGGQGDE 232
Query: 227 EASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSK 279
+V IPFV +IV VD++GR + I PPKGLL+L+ R +E+ +
Sbjct: 233 ------------MVMIPFVPQIVSSVDLDGRMVVINPPKGLLDLSYRREEKVR 273
>gi|323489561|ref|ZP_08094788.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
gi|323396692|gb|EGA89511.1| 16S rRNA-processing protein [Planococcus donghaensis MPA1U2]
Length = 171
Score = 79.3 bits (194), Expect = 5e-12, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + +VG + + HG++GE+ V TDFPE RF GT+ ++ I VK+ R+
Sbjct: 1 MQWFNVGKIVNTHGIRGEVRVLSRTDFPEERFAV-GTKLGLFTPDAKKPIM-VKIASHRQ 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H + +LTFEG + P S L E D ELE+ FY +++G V E G+
Sbjct: 59 HKNFE--LLTFEGYPNINDVEPFKESYLRIAEHDLTELEENAFYHHEILGCAVYSTE-GQ 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + + +GAND+ V + G+ +IP+ EEIV VD+
Sbjct: 116 ELGKITEILETGANDVWEV-------------------TPEKGKKHYIPYTEEIVKEVDI 156
Query: 255 NGREMQITPPKGLL 268
+ +++ I +GLL
Sbjct: 157 DEKKVIIEVIEGLL 170
>gi|227549005|ref|ZP_03979054.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227078915|gb|EEI16878.1| 16S rRNA-processing protein [Corynebacterium lipophiloflavum DSM
44291]
Length = 182
Score = 79.3 bits (194), Expect = 5e-12, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE++V+ TD P+ RF + + + GR+ +E +L P Q
Sbjct: 21 IGKVVKSHGIKGEVAVEVLTDDPDQRFA------VGEVLTGRQPGKERELTIKTLRPHQN 74
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++FE + QA L G A +R E + EFY +L+G++V+ + G VG V
Sbjct: 75 RLLMSFEEVPDRTQADSLRGMQFFAPPLER-EDDSEEFYDHELIGLKVIHE--GREVGEV 131
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V ++ +L + D GR V +PFV + VP +D+ + +
Sbjct: 132 TGVMDTPNRKILEI--------------------DYDGREVLVPFVIDFVPEIDLGEQTL 171
Query: 260 QITPPKGLLEL 270
ITPP+GLL++
Sbjct: 172 TITPPEGLLDV 182
>gi|399003855|ref|ZP_10706504.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM18]
gi|398121599|gb|EJM11222.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM18]
Length = 178
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L RE +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +GAND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTHGQLFGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLVAGEMKV 172
>gi|284047849|ref|YP_003398188.1| 16S rRNA processing protein RimM [Acidaminococcus fermentans DSM
20731]
gi|283952070|gb|ADB46873.1| 16S rRNA processing protein RimM [Acidaminococcus fermentans DSM
20731]
Length = 164
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 11/132 (8%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + + HG++GE + P TD PE R+ + + + + RE ++ R+H +
Sbjct: 7 IGKIVAPHGVRGEFRIMPQTDHPE--------RYAKMKKITLDNGREYTVVSLRQH--KN 56
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++ EGID++ A L G T++ R + P L +G+FY RD++G V E GE VGT+
Sbjct: 57 VYLMKVEGIDSMNDAETLRGRTIVLRPEELPPLPEGQFYVRDIIGFAAVTPE-GETVGTL 115
Query: 200 VNVFNSGANDLL 211
+V + G+ D+
Sbjct: 116 KDVLSPGSTDVF 127
>gi|383828516|ref|ZP_09983605.1| 16S rRNA processing protein RimM [Saccharomonospora xinjiangensis
XJ-54]
gi|383461169|gb|EID53259.1| 16S rRNA processing protein RimM [Saccharomonospora xinjiangensis
XJ-54]
Length = 174
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG++GE++V TD PE RF PG + G + R + + R H G
Sbjct: 3 VVVGRVVKPHGIRGELTVDVRTDSPEQRFA-PGAVLAARARDG--STRRLTVAAVRPHGG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ F + A G TLLA D P +ED EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFTEVPDRNAAEEARGLTLLADAEDLPPIEDPDEFYDHELEGLRAELAD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV + +S +LL SV V E +GR V +PFV IVP VD+
Sbjct: 117 GTVREIIHSPGGELL------SVEVGE----------PGAGREVLVPFVTAIVPRVDVTE 160
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 161 GRIVLDPPEGLLD 173
>gi|297559208|ref|YP_003678182.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843656|gb|ADH65676.1| 16S rRNA processing protein RimM [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 170
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 31/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G+++V TD P RF G T+ + R H G+
Sbjct: 5 VGRIGRAHGVRGDVAVDVRTDDPAARFADGSVLATDPAEAGPLTV-----VSTRRHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG-ELVG 197
++ FEG+ + A L G+ LL D P LED EF+ +L+G+ V TG E VG
Sbjct: 59 -LLVRFEGVADRDAAEGLRGTALLVDSEDIPPLEDPDEFHDHELIGLAAVT--TGAEPVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV +V + A DLL V +G+E V++PFV +VP VD+ G
Sbjct: 116 TVADVLHH-AQDLL------VVTTPDGAE-------------VYVPFVAALVPEVDVAGG 155
Query: 258 EMQITPPKGLLEL 270
+ I PP GLL+L
Sbjct: 156 RIVIDPPPGLLDL 168
>gi|258612038|ref|ZP_05243865.2| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300766440|ref|ZP_07076395.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
gi|404281404|ref|YP_006682302.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2755]
gi|404287222|ref|YP_006693808.1| 16S rRNA processing protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405755953|ref|YP_006679417.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2540]
gi|406704576|ref|YP_006754930.1| 16S rRNA processing protein [Listeria monocytogenes L312]
gi|258607916|gb|EEW20524.1| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-503]
gi|300512864|gb|EFK39956.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N1-017]
gi|404225153|emb|CBY76515.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2540]
gi|404228039|emb|CBY49444.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2755]
gi|404246151|emb|CBY04376.1| 16S rRNA processing protein [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361606|emb|CBY67879.1| 16S rRNA processing protein [Listeria monocytogenes L312]
Length = 169
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + EL G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKEL-G 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 117 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|229918607|ref|YP_002887253.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
gi|259585644|sp|C4L602.1|RIMM_EXISA RecName: Full=Ribosome maturation factor RimM
gi|229470036|gb|ACQ71808.1| 16S rRNA processing protein RimM [Exiguobacterium sp. AT1b]
Length = 172
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 28/196 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D++ VG + + HGL+GE+ + +TDFPE RF T +L V G T +E+ + R
Sbjct: 1 MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFL--DVDG--TKQEMTITTYRP 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ ++TF+G D + G L +L++ EFY +++G V+ GE
Sbjct: 57 H--KQFHLVTFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAVVD--GE 112
Query: 195 LVGTVVNVFNS-GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
++G V ++F + GAND V VI+ SDA IP++E +V +D
Sbjct: 113 VIGVVDDIFETNGAND---------VWVIK-----RPGKSDA-----LIPYIESVVQEID 153
Query: 254 MNGREMQITPPKGLLE 269
++ + + ITP G+++
Sbjct: 154 VDAKRVVITPIPGMID 169
>gi|229086395|ref|ZP_04218571.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
gi|228696911|gb|EEL49720.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-44]
Length = 174
Score = 79.3 bits (194), Expect = 7e-12, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ G E + VK+ R+H
Sbjct: 7 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYIWSDK-GTEPL-PVKITSHRQH- 63
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG V++ GS L E EL +GE+Y +++G VV E GE
Sbjct: 64 --KTFDLLTFEGYGNVDEVEKFKGSLLKVPEEQLGELAEGEYYYHEIIGCNVV-TEDGEA 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 121 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNVE 161
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 162 NKLVTIHVMEGLL 174
>gi|313139561|ref|ZP_07801754.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|421733592|ref|ZP_16172694.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum LMG
13195]
gi|421735766|ref|ZP_16174657.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum IPLA
20015]
gi|313132071|gb|EFR49688.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|407078484|gb|EKE51288.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum LMG
13195]
gi|407296947|gb|EKF16438.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum IPLA
20015]
Length = 200
Score = 79.3 bits (194), Expect = 7e-12, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDGREHPGQKSWILT 144
GL+GE++V+ TD PE RF + R Q E R K WI+
Sbjct: 25 QGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFK----------NRWIVK 74
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE-------TGEL 195
FEGID + + G L E D PE LE+ +Y +DLVG+ + E G++
Sbjct: 75 FEGIDDRDASEAANGIELYG-EADDPEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQV 133
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV+V +S A LL + S V E S+A +PFV+E+VP +D+
Sbjct: 134 IGKVVDVLDS-AQTLLKIRLVSPVRDTVTGEVTESTA--------LVPFVDELVPDIDLE 184
Query: 256 GREMQITPPKGLL 268
+ I PP GL+
Sbjct: 185 EGYLTIDPPGGLI 197
>gi|229031472|ref|ZP_04187472.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
gi|228729761|gb|EEL80741.1| Ribosome maturation factor rimM [Bacillus cereus AH1271]
Length = 171
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE--KSTDYLPVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGCNNVDEAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGANDVWVI-------------------KRPKGQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|226224396|ref|YP_002758503.1| 16S rRNA processing protein RimM [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|386732533|ref|YP_006206029.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 07PF0776]
gi|259585647|sp|C1KW92.1|RIMM_LISMC RecName: Full=Ribosome maturation factor RimM
gi|225876858|emb|CAS05567.1| Putative 16S rRNA processing protein RimM [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384391291|gb|AFH80361.1| 16S rRNA-processing protein RimM [Listeria monocytogenes 07PF0776]
Length = 172
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + EL G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTDGKEL-G 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V +++N +
Sbjct: 120 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEININDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|228909667|ref|ZP_04073490.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
gi|228849956|gb|EEM94787.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 200]
Length = 171
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 28/194 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET-IREVKLIDGREH 135
+ +VG + + HG++GEI V TDFPE R+ T ++ + ++T VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE---KDTDYLPVKVTSHRQH 60
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 ---KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELSEGEYYYHEIIGCSVVTEE-GE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 117 ALGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNI 157
Query: 255 NGREMQITPPKGLL 268
+ + I +GLL
Sbjct: 158 ENKLVTIHVMEGLL 171
>gi|218898995|ref|YP_002447406.1| 16S rRNA-processing protein RimM [Bacillus cereus G9842]
gi|228902345|ref|ZP_04066502.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|228940930|ref|ZP_04103489.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228966787|ref|ZP_04127831.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973859|ref|ZP_04134435.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980449|ref|ZP_04140759.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|384187902|ref|YP_005573798.1| 16S rRNA-processing protein [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402558832|ref|YP_006601556.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis HD-771]
gi|410676216|ref|YP_006928587.1| ribosome maturation factor RimM [Bacillus thuringiensis Bt407]
gi|423385345|ref|ZP_17362601.1| ribosome maturation factor rimM [Bacillus cereus BAG1X1-2]
gi|423528297|ref|ZP_17504742.1| ribosome maturation factor rimM [Bacillus cereus HuB1-1]
gi|423561752|ref|ZP_17538028.1| ribosome maturation factor rimM [Bacillus cereus MSX-A1]
gi|434376945|ref|YP_006611589.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis HD-789]
gi|452200281|ref|YP_007480362.1| 16S rRNA processing protein RimM [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|226694908|sp|B7IUK1.1|RIMM_BACC2 RecName: Full=Ribosome maturation factor RimM
gi|218544507|gb|ACK96901.1| 16S rRNA processing protein RimM [Bacillus cereus G9842]
gi|228779269|gb|EEM27526.1| Ribosome maturation factor rimM [Bacillus thuringiensis Bt407]
gi|228785884|gb|EEM33887.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792886|gb|EEM40444.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228818766|gb|EEM64832.1| Ribosome maturation factor rimM [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228857314|gb|EEN01817.1| Ribosome maturation factor rimM [Bacillus thuringiensis IBL 4222]
gi|326941611|gb|AEA17507.1| 16S rRNA-processing protein [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401202009|gb|EJR08874.1| ribosome maturation factor rimM [Bacillus cereus MSX-A1]
gi|401635401|gb|EJS53156.1| ribosome maturation factor rimM [Bacillus cereus BAG1X1-2]
gi|401787484|gb|AFQ13523.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis HD-771]
gi|401875502|gb|AFQ27669.1| 16S rRNA-processing protein RimM [Bacillus thuringiensis HD-789]
gi|402451960|gb|EJV83779.1| ribosome maturation factor rimM [Bacillus cereus HuB1-1]
gi|409175345|gb|AFV19650.1| ribosome maturation factor RimM [Bacillus thuringiensis Bt407]
gi|452105674|gb|AGG02614.1| 16S rRNA processing protein RimM [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 171
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 28/194 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET-IREVKLIDGREH 135
+ +VG + + HG++GEI V TDFPE R+ T ++ + ++T VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE---KDTDYLPVKVTSHRQH 60
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 ---KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 117 ALGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNI 157
Query: 255 NGREMQITPPKGLL 268
+ + I +GLL
Sbjct: 158 ENKLVTIHVMEGLL 171
>gi|153810633|ref|ZP_01963301.1| hypothetical protein RUMOBE_01017 [Ruminococcus obeum ATCC 29174]
gi|149833029|gb|EDM88111.1| 16S rRNA processing protein RimM [Ruminococcus obeum ATCC 29174]
Length = 168
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + + HG++GE+ V P+TD PE R+L + + +T +E++ +D +
Sbjct: 3 DLLKVGVITTTHGVRGEVKVYPTTDEPE--------RFLDLEYVLLDTGKELRRLDIKNV 54
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K+ IL F+GID + G L + EL++ E+Y DL+GM+V++++ E
Sbjct: 55 RFFKNLVILKFDGIDNINDIEKYKGRDLWIPREEAQELDEDEYYIADLLGMKVLLEDGSE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
GT+ NV +GAND V +++ E V +P ++E + VD+
Sbjct: 115 F-GTLKNVMETGAND---------VYIVDSVEHGE----------VLLPAIKECILDVDI 154
Query: 255 NGREMQITPPKGLL 268
M + KGLL
Sbjct: 155 ETNTMTVHLMKGLL 168
>gi|390936225|ref|YP_006393784.1| ribosome maturation factor [Bifidobacterium bifidum BGN4]
gi|389889838|gb|AFL03905.1| ribosome maturation factor [Bifidobacterium bifidum BGN4]
Length = 200
Score = 79.0 bits (193), Expect = 7e-12, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDGREHPGQKSWILT 144
GL+GE++V+ TD PE RF + R Q E R K WI+
Sbjct: 25 QGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFK----------NRWIVK 74
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE-------TGEL 195
FEGID + + G L E D PE LE+ +Y +DLVG+ + E G++
Sbjct: 75 FEGIDDRDASEAANGIELYG-EADDPEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQI 133
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV+V +S A LL + S V E S+A +PFV+E+VP +D+
Sbjct: 134 IGKVVDVLDS-AQTLLKIRLASPVRDAVTGEVTESTA--------LVPFVDELVPDIDLE 184
Query: 256 GREMQITPPKGLL 268
+ I PP GL+
Sbjct: 185 EGYLTIDPPGGLI 197
>gi|229098311|ref|ZP_04229258.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
gi|229104404|ref|ZP_04235073.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|229117328|ref|ZP_04246706.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|407706301|ref|YP_006829886.1| prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis MC28]
gi|423378319|ref|ZP_17355603.1| ribosome maturation factor rimM [Bacillus cereus BAG1O-2]
gi|423441427|ref|ZP_17418333.1| ribosome maturation factor rimM [Bacillus cereus BAG4X2-1]
gi|423448347|ref|ZP_17425226.1| ribosome maturation factor rimM [Bacillus cereus BAG5O-1]
gi|423464501|ref|ZP_17441269.1| ribosome maturation factor rimM [Bacillus cereus BAG6O-1]
gi|423533843|ref|ZP_17510261.1| ribosome maturation factor rimM [Bacillus cereus HuB2-9]
gi|423540888|ref|ZP_17517279.1| ribosome maturation factor rimM [Bacillus cereus HuB4-10]
gi|423547126|ref|ZP_17523484.1| ribosome maturation factor rimM [Bacillus cereus HuB5-5]
gi|423623082|ref|ZP_17598860.1| ribosome maturation factor rimM [Bacillus cereus VD148]
gi|228666228|gb|EEL21692.1| Ribosome maturation factor rimM [Bacillus cereus Rock1-3]
gi|228679102|gb|EEL33310.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-28]
gi|228685209|gb|EEL39140.1| Ribosome maturation factor rimM [Bacillus cereus Rock3-29]
gi|401128941|gb|EJQ36624.1| ribosome maturation factor rimM [Bacillus cereus BAG5O-1]
gi|401172076|gb|EJQ79297.1| ribosome maturation factor rimM [Bacillus cereus HuB4-10]
gi|401178847|gb|EJQ86020.1| ribosome maturation factor rimM [Bacillus cereus HuB5-5]
gi|401259855|gb|EJR66029.1| ribosome maturation factor rimM [Bacillus cereus VD148]
gi|401636585|gb|EJS54339.1| ribosome maturation factor rimM [Bacillus cereus BAG1O-2]
gi|402418088|gb|EJV50388.1| ribosome maturation factor rimM [Bacillus cereus BAG4X2-1]
gi|402420768|gb|EJV53039.1| ribosome maturation factor rimM [Bacillus cereus BAG6O-1]
gi|402464062|gb|EJV95762.1| ribosome maturation factor rimM [Bacillus cereus HuB2-9]
gi|407383986|gb|AFU14487.1| Ribosome maturation factor rimM [Bacillus thuringiensis MC28]
Length = 171
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE--KSTDFLPVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGANDVWVI-------------------KRPKGQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|315282787|ref|ZP_07871115.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
gi|313613566|gb|EFR87382.1| 16S rRNA processing protein RimM [Listeria marthii FSL S4-120]
Length = 172
Score = 79.0 bits (193), Expect = 8e-12, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++ N +
Sbjct: 120 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINTNDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|20807906|ref|NP_623077.1| 16S rRNA-processing protein RimM [Thermoanaerobacter tengcongensis
MB4]
gi|22001901|sp|Q8R9X3.1|RIMM_THETN RecName: Full=Ribosome maturation factor RimM
gi|20516473|gb|AAM24681.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter
tengcongensis MB4]
Length = 168
Score = 79.0 bits (193), Expect = 8e-12, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRETIREVKLIDGR 133
D+ +VG V S HG++GEI V P T+ PE + P W+ + + + I VK+
Sbjct: 3 DYYNVGKVTSPHGIRGEIKVYPLTNVPERFYDIPYI-WVFDEKDIPCKYEIENVKITS-- 59
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
+ +L +GID+ A L G L + +LE+ E++ DL+GM+V +E G
Sbjct: 60 ----KGMVLLKLKGIDSRNDAEKLKGLFLKVDAENALKLEEDEYFITDLIGMKVYTEE-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
EL+GT+ V +GAND V V++ E R V +P ++E++ VD
Sbjct: 115 ELIGTLEEVLQTGAND---------VYVVKAKE-----------REVLLPAIKEVIKKVD 154
Query: 254 MNGREMQITPPKGL 267
+ G+ M + +GL
Sbjct: 155 VEGKVMIVRLLEGL 168
>gi|310286860|ref|YP_003938118.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
gi|309250796|gb|ADO52544.1| 16S rRNA processing protein rimM [Bifidobacterium bifidum S17]
Length = 204
Score = 79.0 bits (193), Expect = 8e-12, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDGREHPGQKSWILT 144
GL+GE++V+ TD PE RF + R Q E R K WI+
Sbjct: 29 QGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFK----------NRWIVK 78
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE-------TGEL 195
FEGID + + G L E D PE LE+ +Y +DLVG+ + E G++
Sbjct: 79 FEGIDDRDASEAANGIELYG-EADDPEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQV 137
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV+V +S A LL + S V E S+A +PFV+E+VP +D+
Sbjct: 138 IGKVVDVLDS-AQTLLKIRLVSPVRDTVTGEVTESTA--------LVPFVDELVPDIDLE 188
Query: 256 GREMQITPPKGLL 268
+ I PP GL+
Sbjct: 189 EGYLTIDPPGGLI 201
>gi|118617623|ref|YP_905955.1| 16S rRNA-processing protein RimM [Mycobacterium ulcerans Agy99]
gi|443490226|ref|YP_007368373.1| 16S rRNA processing protein RimM [Mycobacterium liflandii 128FXT]
gi|166226457|sp|A0PQ65.1|RIMM_MYCUA RecName: Full=Ribosome maturation factor RimM
gi|118569733|gb|ABL04484.1| 16S rRNA processing protein RimM [Mycobacterium ulcerans Agy99]
gi|442582723|gb|AGC61866.1| 16S rRNA processing protein RimM [Mycobacterium liflandii 128FXT]
Length = 174
Score = 79.0 bits (193), Expect = 8e-12, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG+ GE+ V+ TD P+ RFT PG ++ T R + REH +
Sbjct: 5 IGRVVKAHGITGEVVVEIRTDEPDRRFT-PGASLRAKRSRDGGTGRNYVIEGVREHGAR- 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G++ + A L GS + D P +E+ + +Y L G+RV G+ VG
Sbjct: 63 -LLVRLAGVNDRDTADGLRGSLFVIDSADLPPIEEPDTYYDHQLEGLRV-RTTAGQDVGV 120
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++GA +LL V C S V +PFV IV V ++ R
Sbjct: 121 VAEVLHTGAGELLAVKCDSGE--------------------VLVPFVGAIVTSVSLDDRI 160
Query: 259 MQITPPKGLLEL 270
++I PP GLL+L
Sbjct: 161 LEIDPPDGLLDL 172
>gi|309805500|ref|ZP_07699545.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
gi|308165151|gb|EFO67389.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
09V1-c]
Length = 173
Score = 79.0 bits (193), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 96/195 (49%), Gaps = 31/195 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR---QQVLGRETIREVKLIDGREHP 136
VG + + HGL+GE+ VK TDFP+ RF ++ Q+V + T+ V+
Sbjct: 7 VGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYISVGDQKV--KMTVETVRF------- 57
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++++++ F I+ +++A +V L + D+ +L G +Y L+G+ V ET +
Sbjct: 58 HKQAYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKI 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + ++ GAND+ + + + G++ WIP + +V VD+
Sbjct: 118 GILTDIEMPGANDIWEI-------------------TPSKGKIFWIPNISSVVKQVDLVN 158
Query: 257 REMQITPPKGLLELN 271
+++++ +GL + N
Sbjct: 159 KKIEVILLEGLRDEN 173
>gi|423518532|ref|ZP_17495013.1| ribosome maturation factor rimM [Bacillus cereus HuA2-4]
gi|401160740|gb|EJQ68115.1| ribosome maturation factor rimM [Bacillus cereus HuA2-4]
Length = 221
Score = 79.0 bits (193), Expect = 9e-12, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 54 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEK-GTDYL-TVKVTSHRQH- 110
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LT EG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 111 --KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 168 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 208
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 209 NKLVTIHVMEGLL 221
>gi|320530765|ref|ZP_08031809.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
gi|320137052|gb|EFW28990.1| 16S rRNA processing protein RimM [Selenomonas artemidis F0399]
Length = 175
Score = 79.0 bits (193), Expect = 9e-12, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 31/185 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V + HG+ G++ V P TDFPE RF LR+ V+G E + V++ +E K
Sbjct: 15 IGRVGAPHGIAGDVRVIPLTDFPE-RFAR-----LREVVVGDELLHIVRM---KEQ--GK 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F E+A+ L G L D LE+GE+Y D+VG+ V K G L+G+V
Sbjct: 64 NFLMQFREYPVREEAQRLTGRLLTVARTDAAPLEEGEYYVFDIVGLSVYDK-AGTLLGSV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
NV +G+ND+ V A D GR + IP + +V +D+ G M
Sbjct: 123 ENVIRTGSNDVYAV-----------------RAED--GRELLIPALHSVVRNIDIAGGRM 163
Query: 260 QITPP 264
+ P
Sbjct: 164 DVCLP 168
>gi|398915839|ref|ZP_10657499.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM49]
gi|398930711|ref|ZP_10664776.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM48]
gi|398165021|gb|EJM53145.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM48]
gi|398175890|gb|EJM63629.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM49]
Length = 178
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L RE +++
Sbjct: 4 TPAIADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTLGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|28868681|ref|NP_791300.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969057|ref|ZP_03397196.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|301384048|ref|ZP_07232466.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
Max13]
gi|302058754|ref|ZP_07250295.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
K40]
gi|302131715|ref|ZP_07257705.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422657699|ref|ZP_16720138.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|37999587|sp|Q886V1.1|RIMM_PSESM RecName: Full=Ribosome maturation factor RimM
gi|28851920|gb|AAO54995.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213926055|gb|EEB59611.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato
T1]
gi|331016303|gb|EGH96359.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 179
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K ++ +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVVKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|54026126|ref|YP_120368.1| 16S rRNA-processing protein RimM [Nocardia farcinica IFM 10152]
gi|59798616|sp|Q5YS37.1|RIMM_NOCFA RecName: Full=Ribosome maturation factor RimM
gi|54017634|dbj|BAD59004.1| putative 16S rRNA processing protein [Nocardia farcinica IFM 10152]
Length = 174
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 24/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD P+ RF GT LR ++ +RE + REH G+
Sbjct: 5 VGRVAKSHGVRGELVVEVRTDDPDARFAE-GTV-LRGRLPRSTEVREFTVESAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
+++ G+D A L G+ + + P +D EFY +L G+ V G ++GT
Sbjct: 62 -LLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSV-RDTAGAVLGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V +S A +LL + +A D GR + IPFV IVP V +
Sbjct: 120 VTEVLHSAAGELLSM----------------RAAED--GREILIPFVTAIVPTVSVAEGY 161
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 162 VVIDPPEGLLD 172
>gi|377831269|ref|ZP_09814250.1| 16S rRNA processing protein RimM [Lactobacillus mucosae LM1]
gi|377554947|gb|EHT16645.1| 16S rRNA processing protein RimM [Lactobacillus mucosae LM1]
Length = 169
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + +VG + + HG++GE+ V +TDFP+ RF +L+Q E +R +++ R+
Sbjct: 1 MQYYNVGKIVNTHGIRGEVRVIATTDFPQERFQNGAVLYLKQS--AGEPLR-LEVAGARQ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G W++ F+G D + + L+ E ++ LE+G++Y ++G+ V E E
Sbjct: 58 HKGM--WLVKFKGYDNINDVQSFRDHELMVTEDEQQPLEEGQYYYHQIIGLTVKTLEGRE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G + + + GAND+ V + SD + +P ++++V VD+
Sbjct: 116 L-GVIKEILSPGANDVWVV--------------KRTGQSD-----LLLPVIDDVVKNVDL 155
Query: 255 NGREMQITPPKGL 267
+ E+ + +GL
Sbjct: 156 DKGEVDVELMEGL 168
>gi|423395857|ref|ZP_17373058.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-1]
gi|423406733|ref|ZP_17383882.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-3]
gi|401653599|gb|EJS71143.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-1]
gi|401660023|gb|EJS77506.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-3]
Length = 171
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYISNE--KSTDYLPVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|229174508|ref|ZP_04302040.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
gi|423401316|ref|ZP_17378489.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-2]
gi|423457975|ref|ZP_17434772.1| ribosome maturation factor rimM [Bacillus cereus BAG5X2-1]
gi|423477980|ref|ZP_17454695.1| ribosome maturation factor rimM [Bacillus cereus BAG6X1-1]
gi|228609068|gb|EEK66358.1| Ribosome maturation factor rimM [Bacillus cereus MM3]
gi|401148359|gb|EJQ55852.1| ribosome maturation factor rimM [Bacillus cereus BAG5X2-1]
gi|401654306|gb|EJS71849.1| ribosome maturation factor rimM [Bacillus cereus BAG2X1-2]
gi|402428142|gb|EJV60239.1| ribosome maturation factor rimM [Bacillus cereus BAG6X1-1]
Length = 171
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE--KSTDYLPVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V++A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDEAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGANDVWVI-------------------KRPKGQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|189425509|ref|YP_001952686.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
gi|209573557|sp|B3E5S5.1|RIMM_GEOLS RecName: Full=Ribosome maturation factor RimM
gi|189421768|gb|ACD96166.1| 16S rRNA processing protein RimM [Geobacter lovleyi SZ]
Length = 176
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 43/208 (20%)
Query: 72 ASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE---------LRFTTPGTRWLRQQVLGRE 122
S + + VG + HG++G++ + + E +RF GTR
Sbjct: 3 GSSDNLIAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTR---------- 52
Query: 123 TIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDL 182
+++L H G+ ++LT EG DT+E+A+ L G+ LL + P + E+Y DL
Sbjct: 53 ---QIQLKKAAYHSGK--FLLTLEGFDTIEKAQELAGAELLLQREQLPPPDADEYYWHDL 107
Query: 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWI 242
+G+ VV E G+ +G + ++ +GAND+ V DA+ R I
Sbjct: 108 LGLSVVTNE-GQALGIIKDILETGANDVYLVR------------------DDATKREYLI 148
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLLEL 270
P + ++ V+++ M ITP +GLL+L
Sbjct: 149 PAIASVISSVNIHTGTMTITPLEGLLDL 176
>gi|423367886|ref|ZP_17345318.1| ribosome maturation factor rimM [Bacillus cereus VD142]
gi|423489018|ref|ZP_17465700.1| ribosome maturation factor rimM [Bacillus cereus BtB2-4]
gi|423494743|ref|ZP_17471387.1| ribosome maturation factor rimM [Bacillus cereus CER057]
gi|423498465|ref|ZP_17475082.1| ribosome maturation factor rimM [Bacillus cereus CER074]
gi|423511876|ref|ZP_17488407.1| ribosome maturation factor rimM [Bacillus cereus HuA2-1]
gi|423522328|ref|ZP_17498801.1| ribosome maturation factor rimM [Bacillus cereus HuA4-10]
gi|423592162|ref|ZP_17568193.1| ribosome maturation factor rimM [Bacillus cereus VD048]
gi|423598847|ref|ZP_17574847.1| ribosome maturation factor rimM [Bacillus cereus VD078]
gi|423661318|ref|ZP_17636487.1| ribosome maturation factor rimM [Bacillus cereus VDM022]
gi|423669416|ref|ZP_17644445.1| ribosome maturation factor rimM [Bacillus cereus VDM034]
gi|423674405|ref|ZP_17649344.1| ribosome maturation factor rimM [Bacillus cereus VDM062]
gi|401082747|gb|EJP91012.1| ribosome maturation factor rimM [Bacillus cereus VD142]
gi|401150836|gb|EJQ58288.1| ribosome maturation factor rimM [Bacillus cereus CER057]
gi|401160514|gb|EJQ67892.1| ribosome maturation factor rimM [Bacillus cereus CER074]
gi|401175022|gb|EJQ82225.1| ribosome maturation factor rimM [Bacillus cereus HuA4-10]
gi|401232295|gb|EJR38797.1| ribosome maturation factor rimM [Bacillus cereus VD048]
gi|401237117|gb|EJR43574.1| ribosome maturation factor rimM [Bacillus cereus VD078]
gi|401298543|gb|EJS04143.1| ribosome maturation factor rimM [Bacillus cereus VDM034]
gi|401301359|gb|EJS06948.1| ribosome maturation factor rimM [Bacillus cereus VDM022]
gi|401309956|gb|EJS15289.1| ribosome maturation factor rimM [Bacillus cereus VDM062]
gi|402432266|gb|EJV64325.1| ribosome maturation factor rimM [Bacillus cereus BtB2-4]
gi|402450137|gb|EJV81971.1| ribosome maturation factor rimM [Bacillus cereus HuA2-1]
Length = 221
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 54 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEK-GTDYL-TVKVTSHRQH- 110
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LT EG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 111 --KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 168 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 208
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 209 NKLVTIHVMEGLL 221
>gi|456012680|gb|EMF46368.1| 16S rRNA processing protein RimM [Planococcus halocryophilus Or1]
Length = 171
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + +VG + + HG++GE+ V TDFPE RF GT+ ++ I VK+ R+
Sbjct: 1 MQWFNVGKIVNTHGIRGEVRVLSRTDFPEERFAV-GTKLGLFTPDAKKPIM-VKIASYRQ 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H + +LTFEG + P S L E D ELE+ FY +++G V E E
Sbjct: 59 HKNFE--LLTFEGYPNINDVEPFKESYLRIAEHDLTELEENAFYHHEILGCAVFSIEGQE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G + + +GAND+ V + G+ +IP+ EEIV VD+
Sbjct: 117 L-GKITEILETGANDVWEV-------------------TPEKGKKHYIPYTEEIVKEVDI 156
Query: 255 NGREMQITPPKGLL 268
+ +++ I +GLL
Sbjct: 157 DEKKVIIEVIEGLL 170
>gi|309809535|ref|ZP_07703393.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|312874410|ref|ZP_07734440.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
gi|312874549|ref|ZP_07734574.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|349612302|ref|ZP_08891523.1| ribosome maturation factor rimM [Lactobacillus sp. 7_1_47FAA]
gi|308170207|gb|EFO72242.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN
2503V10-D]
gi|311089940|gb|EFQ48359.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2053A-b]
gi|311090022|gb|EFQ48436.1| 16S rRNA processing protein RimM [Lactobacillus iners LEAF 2052A-d]
gi|348608898|gb|EGY58865.1| ribosome maturation factor rimM [Lactobacillus sp. 7_1_47FAA]
Length = 173
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HGL+GE+ VK TDFP+ RF ++ +G + ++ + + R H ++
Sbjct: 7 VGKIINTHGLKGEVKVKAETDFPQQRFCPNSNLYIS---VGDQKVK-MTVETARFH--KQ 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F I+ +++A +V L + D+ +L G +Y L+G+ V ET +G +
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKTKIGIL 120
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ GAND+ + + G++ WIP + +V VD+ +++
Sbjct: 121 TDIEMPGANDIWEI-------------------TPNKGKIFWIPNISSVVKQVDLVNKKI 161
Query: 260 QITPPKGLLELN 271
++ +GL + N
Sbjct: 162 EVILLEGLRDEN 173
>gi|168032188|ref|XP_001768601.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680100|gb|EDQ66539.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 9/149 (6%)
Query: 476 LFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLL 535
F ++F +VWF++++ LP V E N IL++SPW+ AP G+GG+FS L
Sbjct: 96 FFEKKEYFGLKESQVWFVKQDSLPCVDYK--EGNA--ILLESPWKLAVAPTGNGGLFSAL 151
Query: 536 SSHNIIKNLDELGVEYIQICTA-NPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEE-- 592
+ NI L E GV+Y+Q+ + N +G+ +F G+ AD+G ++ + E
Sbjct: 152 HAQNITDRLSEEGVQYVQVYSVDNALVRVGDPVFFGYAHEQKADVGVKVVKRTSSDEAVG 211
Query: 593 -RFNTMLSMNVM-KKLTNHINKLEFYATP 619
+ L++N+ +++H LE+ P
Sbjct: 212 VVCDERLAINIHGNSISSHYRVLEYNEMP 240
>gi|5738538|emb|CAB52820.1| hypothetical protein [Prochlorococcus marinus]
Length = 103
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL G++ + PS+DFPE RF G RWL+ E ++++L GR+ P
Sbjct: 7 WLTIGKIVAPQGLSGKVRINPSSDFPE-RFIKSGDRWLQYD---NEEPQKIQLNSGRQIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEF 177
G+ +++ F+GID E+A+ LVG LL RP L GEF
Sbjct: 63 GKSIYVVEFQGIDDREKAKALVGKKLLIDSSHRPTLAPGEF 103
>gi|315658472|ref|ZP_07911344.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
gi|315496801|gb|EFU85124.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
M23590]
Length = 173
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 32/194 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK +DF + RF L+ + + E+ + R H G
Sbjct: 10 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEVLTLKHN---NDNV-ELTVTSYRIHKG 65
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
+L FEG D + G L R+ + EL + EFY D++G V GE+
Sbjct: 66 FH--MLKFEGFDNINDVESFKGDYLYQERDHEGIELAEHEFYYSDIIGCTVF---NGEIP 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+N+ +GAND V V++G +E IP++ ++V VD+
Sbjct: 121 IGRVINIIETGAND---------VWVVKGDKE------------YMIPYIADVVKDVDIE 159
Query: 256 GREMQITPPKGLLE 269
+ + ITP +GLL+
Sbjct: 160 NKMIMITPLEGLLD 173
>gi|227503361|ref|ZP_03933410.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
gi|227075864|gb|EEI13827.1| 16S rRNA-processing protein [Corynebacterium accolens ATCC 49725]
Length = 165
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 34/193 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG--REHPG 137
+G V HG++GE+ V+P+TD PE+RF + +++ GR+ +E +L R H G
Sbjct: 5 IGRVIKSHGIKGEVVVEPTTDEPEVRFA------VGEKLQGRQGRKEHELTISAVRSHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++T + I QA L G+ A E +D FY +L G+RV+ GE +G
Sbjct: 59 R--LLVTCKEIADRTQADSLRGTQFFAAP---LEDDDEGFYDHELEGLRVI--RDGEDIG 111
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
VV+V + + DLL V E S+ +S +PFV IVP VD+
Sbjct: 112 AVVSVVHGPSQDLLEV-------------ELSTGSS------ALVPFVHAIVPEVDVEAG 152
Query: 258 EMQITPPKGLLEL 270
I PP+GLL+L
Sbjct: 153 TCTIEPPEGLLDL 165
>gi|163941580|ref|YP_001646464.1| 16S rRNA-processing protein RimM [Bacillus weihenstephanensis
KBAB4]
gi|229013025|ref|ZP_04170190.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
gi|229061445|ref|ZP_04198790.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|229134650|ref|ZP_04263459.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|229168581|ref|ZP_04296304.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|229485581|sp|A9VT80.1|RIMM_BACWK RecName: Full=Ribosome maturation factor RimM
gi|163863777|gb|ABY44836.1| 16S rRNA processing protein RimM [Bacillus weihenstephanensis
KBAB4]
gi|228614987|gb|EEK72089.1| Ribosome maturation factor rimM [Bacillus cereus AH621]
gi|228648696|gb|EEL04722.1| Ribosome maturation factor rimM [Bacillus cereus BDRD-ST196]
gi|228717868|gb|EEL69516.1| Ribosome maturation factor rimM [Bacillus cereus AH603]
gi|228748279|gb|EEL98139.1| Ribosome maturation factor rimM [Bacillus mycoides DSM 2048]
Length = 171
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEK-GTDYL-TVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LT EG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|126698852|ref|YP_001087749.1| 16S rRNA-processing protein RimM [Clostridium difficile 630]
gi|254974800|ref|ZP_05271272.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-66c26]
gi|255092188|ref|ZP_05321666.1| putative 16S rRNA processing protein [Clostridium difficile CIP
107932]
gi|255306212|ref|ZP_05350384.1| putative 16S rRNA processing protein [Clostridium difficile ATCC
43255]
gi|255313927|ref|ZP_05355510.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-76w55]
gi|255516606|ref|ZP_05384282.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-97b34]
gi|255649706|ref|ZP_05396608.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-37x79]
gi|260682862|ref|YP_003214147.1| 16S rRNA processing protein [Clostridium difficile CD196]
gi|260686460|ref|YP_003217593.1| 16S rRNA processing protein [Clostridium difficile R20291]
gi|306519819|ref|ZP_07406166.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-32g58]
gi|384360451|ref|YP_006198303.1| 16S rRNA processing protein RimM [Clostridium difficile BI1]
gi|123174578|sp|Q18BB6.1|RIMM_CLOD6 RecName: Full=Ribosome maturation factor RimM
gi|115250289|emb|CAJ68111.1| 16S rRNA processing protein RimM [Clostridium difficile 630]
gi|260209025|emb|CBA62124.1| putative 16S rRNA processing protein [Clostridium difficile CD196]
gi|260212476|emb|CBE03385.1| putative 16S rRNA processing protein [Clostridium difficile R20291]
Length = 171
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L VG + + GL+GE+ V P TD E RF +L + + + + +V+
Sbjct: 5 LTHFKVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLGKDLNNKLAVEKVR------ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G I+ +GID++E+A L + D ELE+GEF+ D++GM V+ + G+
Sbjct: 58 YKGSMV-IMKIKGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVD-GK 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG + +V AND V V++G E+ + IP +++ VP +D+
Sbjct: 116 YVGILEDVLQYSAND---------VYVVKGEED----------KEFMIPAIKKFVPTIDI 156
Query: 255 NGREMQITPPKGLLE 269
+ R+M I P KG+++
Sbjct: 157 DERKMIIDPIKGMID 171
>gi|311063761|ref|YP_003970486.1| 16S rrNA processing protein [Bifidobacterium bifidum PRL2010]
gi|310866080|gb|ADP35449.1| RimM 16S rRNA processing protein [Bifidobacterium bifidum PRL2010]
Length = 200
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 31/193 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDGREHPGQKSWILT 144
GL+GE++V+ TD PE RF + R Q E R K WI+
Sbjct: 25 QGLKGEVTVQIFTDEPEYRFAPDSVLYTRDGSQEYVVEYARTFK----------NRWIVK 74
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE-------TGEL 195
FEGID + + G L E D PE LE+ +Y +DLVG+ + E G++
Sbjct: 75 FEGIDDRDASEAANGIELYG-EADDPEDMLEEDAWYPKDLVGLEARLAEGNGLGLPAGQV 133
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV+V +S A LL + S V E S+A +PFV+E+VP +D+
Sbjct: 134 IGKVVDVLDS-AQTLLKIRLVSPVRDSVTGEVTESTA--------LVPFVDELVPDIDLE 184
Query: 256 GREMQITPPKGLL 268
+ I PP GL+
Sbjct: 185 EGYLTIDPPGGLI 197
>gi|225568164|ref|ZP_03777189.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
gi|225162883|gb|EEG75502.1| hypothetical protein CLOHYLEM_04238 [Clostridium hylemonae DSM
15053]
Length = 168
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 39/197 (19%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRET----IREVKLID 131
+ VG + S HG++GE+ V P+TD P RF L+Q +L G++T I VK
Sbjct: 5 LKVGVITSTHGIRGEVKVFPTTDDPG-RFKV-----LKQVILDTGKDTLQLEIENVKFF- 57
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
++ IL F+GID + LL D LEDGE++ D++GM+ V E
Sbjct: 58 ------KQFVILKFKGIDNINDVERYKRCALLVERQDAVPLEDGEYFVADMLGMK-VQTE 110
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
GEL GT+ +V +GAND V VI AS A G V +P + E +
Sbjct: 111 DGELFGTLADVMETGAND---------VYVI---------ASPAHGE-VLVPAIRECIQN 151
Query: 252 VDMNGREMQITPPKGLL 268
+D+ M I +GL+
Sbjct: 152 IDIEQGMMTIHLMEGLI 168
>gi|417901268|ref|ZP_12545144.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21266]
gi|341845107|gb|EGS86309.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus 21266]
Length = 170
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 29/183 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REM 259
+++
Sbjct: 155 KKL 157
>gi|398891574|ref|ZP_10644920.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM55]
gi|398186781|gb|EJM74142.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM55]
Length = 178
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L R+ +R+
Sbjct: 4 TPAIADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKRDGNVRQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELLSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTLGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|383764736|ref|YP_005443718.1| ribosome maturation factor RimM [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381385004|dbj|BAM01821.1| ribosome maturation factor RimM [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 205
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 29/194 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR-WLRQQVLGRETIREVKLIDGREH 135
F+ VG++ VHGL+GE+ ++ TDFPE RF TPG R WL + + EV+++ R H
Sbjct: 35 FLAVGHIVGVHGLRGEVKLESYTDFPE-RF-TPGERLWL------GDDLAEVEIVSVRPH 86
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ ++ FEG+ A L G L E + ELE+G ++ DL+G+ V E+G L
Sbjct: 87 --KNHLLIRFEGVSDRTAAEQLRGLWLFVAEEEAAELEEGAYWIHDLIGLE-VRDESGAL 143
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G +V+V +GAND+ V+ +EG + R + +P + E++ VD+
Sbjct: 144 LGELVDVLITGANDVY------VVHAMEG-----------AAREILLPAIPEVILNVDLT 186
Query: 256 GREMQITPPKGLLE 269
M + +GLL+
Sbjct: 187 AGVMTVRLLEGLLD 200
>gi|423615897|ref|ZP_17591731.1| ribosome maturation factor rimM [Bacillus cereus VD115]
gi|401260434|gb|EJR66607.1| ribosome maturation factor rimM [Bacillus cereus VD115]
Length = 171
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE--KSTDFLPVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LTFEG + V+ A GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTFEGYNNVDDAEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGANDVWVI-------------------KRPKGQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|333899242|ref|YP_004473115.1| ribosome maturation factor rimM [Pseudomonas fulva 12-X]
gi|333114507|gb|AEF21021.1| Ribosome maturation factor rimM [Pseudomonas fulva 12-X]
Length = 178
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVK 128
T A D + +G + SVHG++GEI V TD + P RW L R+ +++V+
Sbjct: 4 TPAPAEDLLVLGKIVSVHGVRGEIKVYSFTDPLDNVLDYP--RW----TLRRDGEVKQVE 57
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
L GR K + +G+D E AR G + PEL+DGEFY L G++V+
Sbjct: 58 LAGGRLQ--GKVLVARLKGLDDREVARTYAGFEICVPRSQLPELDDGEFYWYQLEGLKVI 115
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
+ G+L+G V ++F +GAND++ V + + + D RL +P+ ++
Sbjct: 116 -DQAGQLLGKVDHLFETGANDVMVV-------------KPCADSLDDRERL--LPYTQQC 159
Query: 249 VPIVDMNGREMQI 261
V +++ EMQ+
Sbjct: 160 VLSINLEAGEMQV 172
>gi|145224752|ref|YP_001135430.1| 16S rRNA-processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315445082|ref|YP_004077961.1| 16S rRNA processing protein RimM [Mycobacterium gilvum Spyr1]
gi|189040844|sp|A4TE78.1|RIMM_MYCGI RecName: Full=Ribosome maturation factor RimM
gi|145217238|gb|ABP46642.1| 16S rRNA processing protein RimM [Mycobacterium gilvum PYR-GCK]
gi|315263385|gb|ADU00127.1| 16S rRNA processing protein RimM [Mycobacterium gilvum Spyr1]
Length = 173
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE++V+ TD P+ RF R G E RE + R
Sbjct: 1 MDLV-VGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPPRGGAE--REYVIESVRT 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H + ++ F+G+ + A L G+ L D P +ED EFY L G+ V+ G
Sbjct: 58 HGDR--LLVRFDGVADRDAADALRGTVFLVDSADLPPIEDPDEFYDHQLEGLTVITTSGG 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E VG V V ++ A +LL A +A D V +PFV IV V
Sbjct: 116 E-VGKVAEVLHTAAGELL----------------AVRTADDTE---VLVPFVSAIVLSVS 155
Query: 254 MNGREMQITPPKGLLELN 271
++ + + I PP GLLEL+
Sbjct: 156 LDDQLITIDPPDGLLELD 173
>gi|241889523|ref|ZP_04776822.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
gi|241863830|gb|EER68213.1| 16S rRNA processing protein RimM [Gemella haemolysans ATCC 10379]
Length = 169
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 25/192 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ VG + + H L+GE+ V STDF E RF G+ L + G + ++EV + R H
Sbjct: 3 LKVGKIVNTHSLKGEVKVISSTDFEEQRFKK-GSELLITR--GNQVVKEVVVESYRTH-- 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ + ++ F GIDT+E+A + + ELE+ EFY +++G + V E +++G
Sbjct: 58 KNNLLVKFVGIDTIEEAEKFKNLQIKIDSDNIGELEENEFYFHEIIGCK-VFDENNKILG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V VI+ +G+ + IP++E++V +D+ +
Sbjct: 117 EIAEILTPGAND---------VWVIKAE----------TGKEILIPYIEDVVKKIDVTNK 157
Query: 258 EMQITPPKGLLE 269
+ I +GL++
Sbjct: 158 RIDIEVMEGLID 169
>gi|255100272|ref|ZP_05329249.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-63q42]
gi|423090842|ref|ZP_17079128.1| 16S rRNA processing protein RimM [Clostridium difficile
70-100-2010]
gi|357555957|gb|EHJ37579.1| 16S rRNA processing protein RimM [Clostridium difficile
70-100-2010]
Length = 171
Score = 78.2 bits (191), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L VG + + GL+GE+ V P TD E RF +L + + + + +V+
Sbjct: 5 LTHFKVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLGKDLNNKLAVEKVR------ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G I+ +GID++E+A L + D ELE+GEF+ D++GM V+ + G+
Sbjct: 58 YKGSMV-IMKIKGIDSIEKAEKLKNKFMYVAREDSRELEEGEFFIADMIGMEVLTVD-GK 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG + +V AND V V++G E+ + IP +++ VP +D+
Sbjct: 116 YVGILEDVLQYSAND---------VYVVKGEED----------KEFMIPAIKKFVPTIDI 156
Query: 255 NGREMQITPPKGLLE 269
+ R+M I P KG+++
Sbjct: 157 DERKMIIDPIKGMID 171
>gi|330504638|ref|YP_004381507.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
gi|328918924|gb|AEB59755.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina NK-01]
Length = 178
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ--VLGRE-TIRE 126
T A D + +G + SVHG++GE+ V FT P L Q L R+ +++
Sbjct: 4 TPAVAEDLIVLGKIVSVHGVRGEVKV--------YSFTDPIDNVLDYQNWTLKRDGEVKK 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L GR K ++ +G+D E AR G + + P+LE+GEFY L G++
Sbjct: 56 VELASGRLQ--GKVLVVKLKGLDDREIARTYAGFEICVPRSELPDLEEGEFYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G V ++F +GAND++ V +A + + D RL +P+ +
Sbjct: 114 VI-DQAGQLLGVVDHLFETGANDVMVV-------------KACAGSLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EM++
Sbjct: 158 QCVLSIDLAAGEMRV 172
>gi|423082356|ref|ZP_17070948.1| 16S rRNA processing protein RimM [Clostridium difficile
002-P50-2011]
gi|423087748|ref|ZP_17076134.1| 16S rRNA processing protein RimM [Clostridium difficile
050-P50-2011]
gi|357544062|gb|EHJ26068.1| 16S rRNA processing protein RimM [Clostridium difficile
050-P50-2011]
gi|357548682|gb|EHJ30542.1| 16S rRNA processing protein RimM [Clostridium difficile
002-P50-2011]
Length = 171
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L VG + + GL+GE+ V P TD E RF +L + + + + +V+
Sbjct: 5 LTHFKVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLGKDLNDKLAVEKVR------ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G I+ +GID++E+A L + D ELE+GEF+ D++GM V+ + G+
Sbjct: 58 YKGSMV-IMKIKGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVD-GK 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG + +V AND V V++G E+ + IP +++ VP +D+
Sbjct: 116 YVGILEDVLQYSAND---------VYVVKGEED----------KEFMIPAIKKFVPTIDI 156
Query: 255 NGREMQITPPKGLLE 269
+ R+M I P KG+++
Sbjct: 157 DERKMIIDPIKGMID 171
>gi|375088726|ref|ZP_09735064.1| 16S rRNA processing protein RimM [Dolosigranulum pigrum ATCC 51524]
gi|374561691|gb|EHR33030.1| 16S rRNA processing protein RimM [Dolosigranulum pigrum ATCC 51524]
Length = 172
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR--WLRQQVLGRETIREVKLIDGRE 134
+V+VG + + HG++GE+ V TDFPE R+ PG WL T+ + R+
Sbjct: 4 YVNVGKIVNTHGIKGEVRVISDTDFPEERYQ-PGAELVWLGDSEANTLTL---TVASHRQ 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ ++ FE T+ +A LVG TL E D L+D FY D+VG+ E G
Sbjct: 60 H--KQFDLVKFESYPTINEAESLVGGTLNVTEADLATLDDDTFYWHDIVGL-TAYDEAGA 116
Query: 195 LVGTVVNVFNSGANDL 210
+G V + +SGAND+
Sbjct: 117 EIGQVKEILSSGANDV 132
>gi|333991269|ref|YP_004523883.1| 16S rRNA-processing protein RimM [Mycobacterium sp. JDM601]
gi|333487237|gb|AEF36629.1| 16S rRNA processing protein RimM [Mycobacterium sp. JDM601]
Length = 173
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GE+ V TD P+ RFT R++ E R+V + R H +
Sbjct: 5 VGRVVKAHGITGEVVVDVRTDDPDERFTPGAVLCARKR---GEQPRDVVVDAVRPHGSR- 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPEL-EDGEFYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L GS L+ D P + ED +Y L G+RV E GE +GT
Sbjct: 61 -LLVRLAGVSDRDAADALRGSLLVIDSADLPPIDEDDTYYDHQLEGLRV-RTEAGEDIGT 118
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++GA +LL +V +G+E + +PFV IV V + +
Sbjct: 119 VTEVLHTGAGELL------AVRRTDGAE-------------LLVPFVSAIVTSVSLAEQL 159
Query: 259 MQITPPKGLLELN 271
+ I PP GLLEL+
Sbjct: 160 VWIDPPDGLLELS 172
>gi|345303698|ref|YP_004825600.1| ribosome maturation factor rimM [Rhodothermus marinus
SG0.5JP17-172]
gi|345112931|gb|AEN73763.1| Ribosome maturation factor rimM [Rhodothermus marinus
SG0.5JP17-172]
Length = 179
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 32/195 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR--ETIREVKLIDGREHPG 137
+GYV HG++G V P TD P RF T L +GR ET R V+L + P
Sbjct: 12 MGYVARAHGVRGAFKVVPETDDPT-RFET-----LETIYVGRSPETARPVRLQRVQYQPT 65
Query: 138 QKSWILTFEGIDTVEQ--ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ I+ + + ++ A+ L G + AR+ D P L +GEF+ DL+G+R V E GE
Sbjct: 66 RRGLIVLLQVAEVTDRDAAQALRGLRVYARQSDLPPLAEGEFFLHDLIGLR-VETEAGET 124
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR-LVWIPFVEEIVPIVDM 254
VGTVV V A+ L++V+ GR +P VE V +D+
Sbjct: 125 VGTVVEVLEMPAH-LIYVV-------------------GRPGRPHAMVPDVEVFVRELDL 164
Query: 255 NGREMQITPPKGLLE 269
GR + I P +GLL+
Sbjct: 165 EGRRLVIRPIEGLLD 179
>gi|229019037|ref|ZP_04175878.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
gi|229025283|ref|ZP_04181703.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|423389851|ref|ZP_17367077.1| ribosome maturation factor rimM [Bacillus cereus BAG1X1-3]
gi|423418251|ref|ZP_17395340.1| ribosome maturation factor rimM [Bacillus cereus BAG3X2-1]
gi|228736036|gb|EEL86611.1| Ribosome maturation factor rimM [Bacillus cereus AH1272]
gi|228742277|gb|EEL92436.1| Ribosome maturation factor rimM [Bacillus cereus AH1273]
gi|401106524|gb|EJQ14485.1| ribosome maturation factor rimM [Bacillus cereus BAG3X2-1]
gi|401641942|gb|EJS59659.1| ribosome maturation factor rimM [Bacillus cereus BAG1X1-3]
Length = 171
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYICNEK-GTDYL-PVKVTSHRQH- 60
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LT EG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 --KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 118 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 158
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 159 NKLVTIHVMEGLL 171
>gi|183981814|ref|YP_001850105.1| 16S rRNA-processing protein RimM [Mycobacterium marinum M]
gi|238689244|sp|B2HJL4.1|RIMM_MYCMM RecName: Full=Ribosome maturation factor RimM
gi|183175140|gb|ACC40250.1| 16S rRNA processing protein RimM [Mycobacterium marinum M]
Length = 174
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG+ GE+ V+ TD P+ RFT PG ++ T R + REH +
Sbjct: 5 IGRVVKAHGITGEVVVEIRTDEPDRRFT-PGASLRAKRSRDGGTGRNYVIEGVREHGAR- 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G++ + A L GS + D P +++ + +Y L G+RV G+ VG
Sbjct: 63 -LLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRV-RTTAGQDVGV 120
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++GA +LL V C S V +PFV IV V ++ R
Sbjct: 121 VAEVLHTGAGELLAVKCDSGE--------------------VLVPFVGAIVTSVSLDDRI 160
Query: 259 MQITPPKGLLEL 270
++I PP GLL+L
Sbjct: 161 LEIDPPDGLLDL 172
>gi|398864970|ref|ZP_10620498.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM78]
gi|398244362|gb|EJN29919.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM78]
Length = 178
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A+ D + +G +YSVHG++GE+ V FT P L + L R+ +++
Sbjct: 4 TPAAADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKRDGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTLGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EM++
Sbjct: 158 QCVLAIDLVAGEMKV 172
>gi|229162778|ref|ZP_04290735.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
gi|228620660|gb|EEK77529.1| Ribosome maturation factor rimM [Bacillus cereus R309803]
Length = 171
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 28/194 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET-IREVKLIDGREH 135
+ +VG + + HG++GEI V TDFPE R+ T ++ + ++T VK+ R+H
Sbjct: 4 WFNVGKIVNTHGVRGEIRVISRTDFPEERYKVGNTLYISNE---KDTDYLPVKVTSHRQH 60
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LT EG + V++ L GS + E EL +GE+Y +++G VV +E GE
Sbjct: 61 ---KTFDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCSVVTEE-GE 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 117 ALGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNI 157
Query: 255 NGREMQITPPKGLL 268
+ + I +GLL
Sbjct: 158 ENKLVTIHVMEGLL 171
>gi|398951395|ref|ZP_10674043.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM33]
gi|426411330|ref|YP_007031429.1| 16S rRNA-processing protein RimM [Pseudomonas sp. UW4]
gi|398156782|gb|EJM45196.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM33]
gi|426269547|gb|AFY21624.1| 16S rRNA-processing protein RimM [Pseudomonas sp. UW4]
Length = 178
Score = 77.8 bits (190), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L R+ +++
Sbjct: 4 TPAVADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKRDGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTLGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|271963365|ref|YP_003337561.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
gi|270506540|gb|ACZ84818.1| 16S rRNA processing protein RimM [Streptosporangium roseum DSM
43021]
Length = 171
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + HGL+G++SV+ TD PE RF PGT + E + R H G
Sbjct: 5 IGRIGRPHGLRGDVSVEVRTDDPERRFA-PGTAVATDPASAGPLVIESR----RWHSG-- 57
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ FEG++ +A L G+TL+ D P +D EFY L+G+ V+ + GE VG
Sbjct: 58 VLLVRFEGVNDRNRAEDLRGTTLVIDSADIPPSDDPDEFYDHQLIGLAVLTPD-GERVGE 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V + G DLL V G V++PFV+ +VP+VD++
Sbjct: 117 VSDVLHHG-QDLLVVR--------------------RGGAEVYVPFVKALVPVVDLDKGV 155
Query: 259 MQITPPKGLLE 269
+ + P GLL+
Sbjct: 156 LVVDGPAGLLD 166
>gi|302670921|ref|YP_003830881.1| 16S rRNA-processing protein RimM [Butyrivibrio proteoclasticus
B316]
gi|302395394|gb|ADL34299.1| 16S rRNA processing protein RimM [Butyrivibrio proteoclasticus
B316]
Length = 170
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 25/193 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D VG + S HGLQGE++V P+T+ P RF + L++ L + E++L
Sbjct: 3 DRFQVGVIASTHGLQGEVNVFPTTEDPN-RF-----KKLKKVTLHTQRGEEIELDVQSAR 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+K I+ F+ + + G L D +LE GE+Y DL+G+ +V E G
Sbjct: 57 FFKKFVIVKFKQYNNINDVEKFRGCELTIERKDAIKLEPGEYYCADLMGLDIV-DEDGNK 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ +GAND+ + EGS+E V+IP +++ V +D+N
Sbjct: 116 LGVVTDIIQTGANDVYEM-------AREGSDEK-----------VYIPVIKDCVRNIDVN 157
Query: 256 GREMQITPPKGLL 268
G ++ I +GLL
Sbjct: 158 GGKITIHVLEGLL 170
>gi|354559589|ref|ZP_08978836.1| Ribosome maturation factor rimM [Desulfitobacterium metallireducens
DSM 15288]
gi|353541226|gb|EHC10695.1| Ribosome maturation factor rimM [Desulfitobacterium metallireducens
DSM 15288]
Length = 169
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG+QGE+ V P TD P+ RF L Q + R K++ R H Q
Sbjct: 6 IGEVIKSHGVQGELKVYPITDNPQ-RFKKLDRVSLEQ----KGVTRSFKILKARVH--QD 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
LT EGI+T E+A L GS + D P L++G +Y +L GM+V E +G +
Sbjct: 59 EVYLTLEGIETREEADKLRGSAVKIDRADVPPLKEGWYYF-ELEGMQVFEGEI--CLGVL 115
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V +GAND V +++G + R + +P ++ +V VD+ GR M
Sbjct: 116 TQVIETGAND---------VYLVKGEQ-----------REICVPALKSVVKKVDVPGRRM 155
Query: 260 QITPPKGLLE 269
++ P GLLE
Sbjct: 156 EVELPPGLLE 165
>gi|410089102|ref|ZP_11285730.1| 16S rRNA-processing protein RimM [Pseudomonas viridiflava
UASWS0038]
gi|409763629|gb|EKN48585.1| 16S rRNA-processing protein RimM [Pseudomonas viridiflava
UASWS0038]
Length = 179
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T A D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPAPADDLIVIGKIYSVHGVRGEVKVFSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVAKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
VD+ EM++
Sbjct: 162 LAVDLGAGEMKV 173
>gi|83589818|ref|YP_429827.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
gi|109893023|sp|Q2RJV5.1|RIMM_MOOTA RecName: Full=Ribosome maturation factor RimM
gi|83572732|gb|ABC19284.1| 16S rRNA processing protein RimM [Moorella thermoacetica ATCC
39073]
Length = 176
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ--VLGRE-TIREVKLIDGRE 134
+ VG + HG++GE+ V P TDFPE RF PGTR + +Q GRE V +I R
Sbjct: 6 IGVGKIIGTHGIRGEVKVFPLTDFPE-RF-RPGTRLILEQEGADGREGRTFPVTVISVR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ + IL I+ +QA + G+TL + L +G +Y L+G R V GE
Sbjct: 63 -PGKGNLILKLAEINDADQAGAVRGATLKVEPWEVEPLPEGHYYIYQLLGSR-VYTTGGE 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ +GAND+ V +E+A + IP ++ +V VD+
Sbjct: 121 FLGILRDILATGANDVYVVR----------NEDAGE---------ILIPALKTVVRQVDL 161
Query: 255 NGREMQITPPKGL 267
+E+++ P GL
Sbjct: 162 ARKEIRVELPPGL 174
>gi|389683411|ref|ZP_10174743.1| 16S rRNA processing protein RimM [Pseudomonas chlororaphis O6]
gi|399008225|ref|ZP_10710703.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM17]
gi|425897724|ref|ZP_18874315.1| 16S rRNA processing protein RimM [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388552924|gb|EIM16185.1| 16S rRNA processing protein RimM [Pseudomonas chlororaphis O6]
gi|397892162|gb|EJL08640.1| 16S rRNA processing protein RimM [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398117529|gb|EJM07279.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM17]
Length = 178
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L RE ++++
Sbjct: 4 TPAPADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + +K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--EKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTHGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|70728477|ref|YP_258226.1| 16S rRNA-processing protein RimM [Pseudomonas protegens Pf-5]
gi|109893033|sp|Q4KHQ7.1|RIMM_PSEF5 RecName: Full=Ribosome maturation factor RimM
gi|68342776|gb|AAY90382.1| 16S rRNA processing protein RimM [Pseudomonas protegens Pf-5]
Length = 178
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L RE ++++
Sbjct: 4 TPAPADDLIVIGKIYSVHGVRGEVKV--------FSFTDPIKNLLDYKTWTLKREGSVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRSLFPELTDGEYYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DGLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|146308419|ref|YP_001188884.1| 16S rRNA-processing protein RimM [Pseudomonas mendocina ymp]
gi|166226467|sp|A4XXT6.1|RIMM_PSEMY RecName: Full=Ribosome maturation factor RimM
gi|145576620|gb|ABP86152.1| 16S rRNA processing protein RimM [Pseudomonas mendocina ymp]
Length = 178
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G + SVHG++GE+ V FT P L R L R+ +++
Sbjct: 4 TPAVAEDLIVLGKIVSVHGVRGEVKV--------YSFTDPIDNVLDYRHWTLRRDGEVKK 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L GR K + +G+D E AR G + + P+LE+GEFY L G++
Sbjct: 56 VELASGRLQ--GKVLVAKLKGLDDREIARTYAGFEICVPRSELPDLEEGEFYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G V ++F +GAND++ V +A + + D RL +P+ +
Sbjct: 114 VI-DQAGQLLGVVDHLFETGANDVMVV-------------KACAGSLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EM++
Sbjct: 158 QCVLSIDLAAGEMRV 172
>gi|289550971|ref|YP_003471875.1| 16S rRNA-processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
gi|385784598|ref|YP_005760771.1| 16S rRNA processing protein [Staphylococcus lugdunensis N920143]
gi|418414273|ref|ZP_12987488.1| ribosome maturation factor rimM [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180503|gb|ADC87748.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
HKU09-01]
gi|339894854|emb|CCB54151.1| 16S rRNA processing protein [Staphylococcus lugdunensis N920143]
gi|410876880|gb|EKS24777.1| ribosome maturation factor rimM [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 166
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK +DF + RF L+ + + E+ + R H G
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEVLTLKHN---NDNV-ELTVTSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
+L FEG D + G L R+ + EL + EFY D++G V GE+
Sbjct: 59 FH--MLKFEGFDNINDVESYKGDYLYQERDHEGIELAEHEFYYSDIIGCTVF---NGEIP 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V N+ +GAND V V++G +E IP++ ++V VD+
Sbjct: 114 IGRVTNIIETGAND---------VWVVKGDKE------------YMIPYIADVVKDVDIE 152
Query: 256 GREMQITPPKGLLE 269
+ + ITP +GLL+
Sbjct: 153 NKTIMITPLEGLLD 166
>gi|47097598|ref|ZP_00235125.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258611625|ref|ZP_05234263.2| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258612340|ref|ZP_05270099.2| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
gi|47014029|gb|EAL05035.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a
F6854]
gi|258601991|gb|EEW15316.1| 16S rRNA processing protein RimM [Listeria monocytogenes FSL
N3-165]
gi|258611013|gb|EEW23621.1| 16S rRNA processing protein RimM [Listeria monocytogenes F6900]
Length = 169
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTDLEENEFYFHEIIGCTVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++++ +
Sbjct: 117 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINIDDQ 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|423483432|ref|ZP_17460122.1| ribosome maturation factor rimM [Bacillus cereus BAG6X1-2]
gi|401140983|gb|EJQ48538.1| ribosome maturation factor rimM [Bacillus cereus BAG6X1-2]
Length = 221
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 103/193 (53%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GEI V TDFPE R+ T ++ + G + + VK+ R+H
Sbjct: 54 WFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEK-GTDYL-TVKVTSHRQH- 110
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K++ +LT EG + V++ GS + E EL +GE+Y +++G VV +E GE
Sbjct: 111 --KTFDLLTLEGYNNVDEVEKFKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEE-GEA 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + + GAND V VI+ + G+ + IP+++++V V++
Sbjct: 168 LGTIKEILSPGAND---------VWVIKRPK----------GQDLLIPYIDDVVLQVNIE 208
Query: 256 GREMQITPPKGLL 268
+ + I +GLL
Sbjct: 209 NKLVTIHVMEGLL 221
>gi|398874522|ref|ZP_10629728.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM74]
gi|398194775|gb|EJM81839.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM74]
Length = 178
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G +YSVHG++GE+ V FT P L + L R+ +++
Sbjct: 4 TPAIADDLIVIGKIYSVHGVRGEVKV--------YSFTDPIKNLLDYKTWTLKRDGNVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR + K + +G+D E+AR L G + PEL DGE+Y L G++
Sbjct: 56 VELVSGRGN--DKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ G+L G + ++ +G+ND++ V + + + D RL +P+ E
Sbjct: 114 VI-DTLGQLFGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTE 157
Query: 247 EIVPIVDMNGREMQI 261
+ V VD+ EM++
Sbjct: 158 QCVLAVDLAAGEMKV 172
>gi|56460826|ref|YP_156107.1| 16S rRNA-processing protein RimM [Idiomarina loihiensis L2TR]
gi|67461320|sp|Q5QUU9.1|RIMM_IDILO RecName: Full=Ribosome maturation factor RimM
gi|56179836|gb|AAV82558.1| RimM [Idiomarina loihiensis L2TR]
Length = 174
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + +V+G++G + V+ TD PE F + WL L ++T RE+K+++ R H
Sbjct: 9 VGRIGAVYGVKGWLKVQSFTDDPESIFEY--SPWL----LSQKTEREMKVVEWRRH--NN 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
I EGI ++A L G+ + + P L D EFY RDL+GMRVV G +G V
Sbjct: 61 GLIARLEGISDRDEAARLTGADICITADELPALADDEFYWRDLIGMRVV-NTNGYDMGVV 119
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE-EIVPIVDMNGRE 258
+ + +ND+L V S+ S RL IPF++ E V VD ++
Sbjct: 120 EQIMPTASNDVLVVKA------------NSNDGFGKSERL--IPFIQSEYVTAVDKEAKQ 165
Query: 259 MQITPP 264
+Q+ P
Sbjct: 166 IQVEWP 171
>gi|379020948|ref|YP_005297610.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M013]
gi|359830257|gb|AEV78235.1| 16S rRNA processing protein RimM [Staphylococcus aureus subsp.
aureus M013]
Length = 170
Score = 77.4 bits (189), Expect = 3e-11, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 29/183 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ E+Y D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEYYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REM 259
+++
Sbjct: 155 KKL 157
>gi|309808810|ref|ZP_07702695.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325913425|ref|ZP_08175791.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|329919878|ref|ZP_08276816.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
gi|308167936|gb|EFO70069.1| 16S rRNA processing protein RimM [Lactobacillus iners LactinV
01V1-a]
gi|325477194|gb|EGC80340.1| 16S rRNA processing protein RimM [Lactobacillus iners UPII 60-B]
gi|328936968|gb|EGG33398.1| 16S rRNA processing protein RimM [Lactobacillus iners SPIN 1401G]
Length = 173
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HGL+GE+ VK TDFP+ RF + ++ G + ++ + + R H ++
Sbjct: 7 VGKIINTHGLKGEVKVKAETDFPQQRFCPNSSLYISA---GDQKVK-MTVETARFH--KQ 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F I+ +++A +V L + D+ +L G +Y L+G+ V ET +G +
Sbjct: 61 AYLVKFLQINDIDEANRIVNKNLYVSDEDQTDLPKGSYYIHQLIGLDVFDYETKRKIGIL 120
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ GAND+ + + + G+ WIP + +V VD+ +++
Sbjct: 121 TDIEMPGANDIWEI-------------------TPSKGKPFWIPNISSVVKQVDLVNKKV 161
Query: 260 QITPPKGLLELN 271
++ +GL + N
Sbjct: 162 EVILLEGLRDEN 173
>gi|71029476|ref|XP_764381.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351335|gb|EAN32098.1| hypothetical protein TP04_0745 [Theileria parva]
Length = 803
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI 130
+ S D+V VG + V+GL G + VK T PE+R PG R+L+ E + + L+
Sbjct: 473 TLSNDDYVVVGKILGVYGLHGNVKVKSYTSQPEIRLCEPGYRYLKIP-FNDEKVIPINLL 531
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
GR + +I+ FEG D V QA+ + + L P LE+ +Y RD++G+ + +
Sbjct: 532 RGRISGTKDVYIVKFEGFDNVHQAQRITNTYLTVPLSIMPPLEENTYYARDIIGLGLYL 590
>gi|357057492|ref|ZP_09118352.1| 16S rRNA processing protein RimM [Selenomonas infelix ATCC 43532]
gi|355375396|gb|EHG22683.1| 16S rRNA processing protein RimM [Selenomonas infelix ATCC 43532]
Length = 169
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 35/188 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET--IREVKLIDGREHPG 137
+G V + HG++GE+ V P TDFPE RF LR+ ++G E I VK P
Sbjct: 15 IGRVGAAHGIRGELRVIPLTDFPE-RFAA-----LREVMVGDELLHIESVK-------PQ 61
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++++ F E A+ L G L + L++GE+Y D+VG+ V +E EL G
Sbjct: 62 GKNFLMRFREYAVREDAQKLTGRHLTVARAEAAPLDEGEYYVFDIVGLTVYDEEDNEL-G 120
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV NV +G+ND+ V SE+ GR + IP + +V +D+ G
Sbjct: 121 TVENVLRTGSNDVYAVR----------SED---------GREILIPALRAVVREIDVPGG 161
Query: 258 EMQITPPK 265
M + P+
Sbjct: 162 HMTVRFPQ 169
>gi|302185526|ref|ZP_07262199.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. syringae
642]
Length = 179
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVFSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|418637488|ref|ZP_13199808.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
VCU139]
gi|374838996|gb|EHS02528.1| 16S rRNA processing protein RimM [Staphylococcus lugdunensis
VCU139]
Length = 166
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK +DF + RF L+ + + E+ + R H G
Sbjct: 3 VEVGQIVNTHGIKGEVKVKSHSDFTDTRFQPGEVLTLKHN---NDNV-ELTVTSYRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
+L FEG D + G L R+ + EL + EFY D++G V GE+
Sbjct: 59 FH--MLKFEGFDNINDVESFKGDYLYQERDHEGIELAEHEFYYSDIMGCTVF---NGEIP 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V N+ +GAND V V++G +E IP++ ++V VD+
Sbjct: 114 IGRVTNIIETGAND---------VWVVKGDKE------------YMIPYIADVVKDVDIE 152
Query: 256 GREMQITPPKGLLE 269
+ + ITP +GLL+
Sbjct: 153 NKTIMITPLEGLLD 166
>gi|441206862|ref|ZP_20973284.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis MKD8]
gi|440628170|gb|ELQ89970.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis MKD8]
Length = 173
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V+ TD PE RF PG + G E RE + R
Sbjct: 1 MDLV-VGRVVKAHGISGEVVVEIRTDDPEARFA-PGAVLRGRPRSGAE--REYTIESVRA 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ GI A L G+ L + P ++D EFY +L GMRVV +
Sbjct: 57 HGGR--LLVRLAGIADRNGADELRGTVFLVDTAELPSIDDPDEFYDHELEGMRVVTVDDA 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V V ++ ++L V +D GR + +PFV IV V
Sbjct: 115 P-VGKVAEVLHTAGGEILAV------------------KADEGGREILVPFVGAIVTSVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ I PP+GLL+L
Sbjct: 156 RENATIVIDPPEGLLDL 172
>gi|402699468|ref|ZP_10847447.1| 16S rRNA-processing protein RimM [Pseudomonas fragi A22]
Length = 179
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 32/191 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL----GRETIREVKLID 131
D + +G +YS+HG++GE+ V FT P L + L G E +R+ +L+
Sbjct: 10 DLIVIGKIYSIHGVRGEVKV--------YSFTDPIDNLLDYKKLTLRRGNE-VRQAELVS 60
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
GR H G K ++ +G+D ++A L + PEL DGE+Y L G++V E
Sbjct: 61 GRSHNG-KFLVVKLKGLDDRDEAGLLREFEICVPRNLFPELTDGEYYWYQLQGLKVTNLE 119
Query: 192 TGELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
G+L+G VV++ +G+ND++ V C S+ D RL +P+ E+ V
Sbjct: 120 -GQLLGKVVDLMETGSNDVMEVKPCPGSL--------------DDRDRL--LPYTEQCVL 162
Query: 251 IVDMNGREMQI 261
+D+ EM++
Sbjct: 163 SIDLEAGEMKV 173
>gi|255655266|ref|ZP_05400675.1| putative 16S rRNA processing protein [Clostridium difficile
QCD-23m63]
gi|296451251|ref|ZP_06892991.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296880397|ref|ZP_06904360.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
gi|296259857|gb|EFH06712.1| 16S rRNA processing protein RimM [Clostridium difficile NAP08]
gi|296428638|gb|EFH14522.1| 16S rRNA processing protein RimM [Clostridium difficile NAP07]
Length = 171
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L VG + + GL+GE+ V P TD E RF +L + + + ++ +V+
Sbjct: 5 LTHFKVGQIVNTQGLKGEVRVYPLTDDIE-RFDELKDFYLGKDLNNKLSVEKVR------ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G I+ +GID++E+A L + D ELE+GEF+ D++G+ V+ + G+
Sbjct: 58 YKGSMV-IMKIKGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGIEVLTVD-GK 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG + +V AND V V++G E+ + IP +++ VP +D+
Sbjct: 116 YVGILEDVLQYSAND---------VYVVKGEED----------KEFMIPAIKKFVPTIDI 156
Query: 255 NGREMQITPPKGLLE 269
+ R+M I P KG+++
Sbjct: 157 DERKMIIDPIKGMID 171
>gi|71733889|ref|YP_273613.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257487157|ref|ZP_05641198.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|289625895|ref|ZP_06458849.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289646207|ref|ZP_06477550.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416018127|ref|ZP_11565128.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. B076]
gi|416025669|ref|ZP_11569317.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422403743|ref|ZP_16480800.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422582685|ref|ZP_16657818.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422594742|ref|ZP_16669032.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422679875|ref|ZP_16738148.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|109893032|sp|Q48LV9.1|RIMM_PSE14 RecName: Full=Ribosome maturation factor RimM
gi|71554442|gb|AAZ33653.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157214|gb|EFH98301.1| 16S rRNA processing protein RimM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323177|gb|EFW79266.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329552|gb|EFW85541.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330867525|gb|EGH02234.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330874829|gb|EGH08978.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330985049|gb|EGH83152.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009222|gb|EGH89278.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 179
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVFSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVAKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|254914088|ref|ZP_05264100.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|386047445|ref|YP_005965777.1| 16S rRNA processing protein RimM [Listeria monocytogenes J0161]
gi|293592110|gb|EFG00445.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534436|gb|AEO03877.1| 16S rRNA processing protein RimM [Listeria monocytogenes J0161]
Length = 172
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTDLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINIDDQ 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|294101556|ref|YP_003553414.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
gi|293616536|gb|ADE56690.1| 16S rRNA processing protein RimM [Aminobacterium colombiense DSM
12261]
Length = 176
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 30/198 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTP--GTRWLRQQVLGRETIREVKLIDGR 133
+ V +G + VHGL+G I + P TDFP+ FT ++ L T++++K +DG+
Sbjct: 5 NLVTIGRIVGVHGLRGGIKIFPLTDFPQRFFTMKNLAVYGEDEKPLAVLTVQDMKFLDGK 64
Query: 134 EHPGQKSWILTFEG--IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
I+ E + T + A L + +R LE+GE++ DL+GM+V K
Sbjct: 65 G-------IIVAETRELQTPKSAESLKDCLIKITSEERYSLEEGEYWIDDLIGMKVFEKG 117
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
+G +G V NVF +G ND+ V+ SD G+ +IP V E +
Sbjct: 118 SGRYLGMVHNVFFAGENDIYTVI------------------SD-DGKEHFIPAVSEFIKK 158
Query: 252 VDMNGREMQITPPKGLLE 269
VD++ R M++ +GL E
Sbjct: 159 VDIDNRVMEVEMIEGLWE 176
>gi|269127627|ref|YP_003300997.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
gi|268312585|gb|ACY98959.1| 16S rRNA processing protein RimM [Thermomonospora curvata DSM
43183]
Length = 172
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V VG + HG++GE++V TD P+ RF LG T+ + GR
Sbjct: 4 DQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGR-- 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGE 194
+L F G+D A L G+ L+ GD P LED EF+ +L+G+ V + G
Sbjct: 62 -----LLLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTD-GT 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV ++ + A DLL + +G +PFV +VP VD+
Sbjct: 116 PVGTVRDILHY-AQDLLVI-------------------RRETGGEALVPFVAALVPEVDV 155
Query: 255 NGREMQITPPKGLLE 269
G + I PP GLL+
Sbjct: 156 AGGRIVIDPPPGLLD 170
>gi|337291050|ref|YP_004630071.1| ribosome maturation factor [Corynebacterium ulcerans BR-AD22]
gi|397654311|ref|YP_006494994.1| 16S rRNA-processing protein RimM [Corynebacterium ulcerans 0102]
gi|334699356|gb|AEG84152.1| ribosome maturation factor [Corynebacterium ulcerans BR-AD22]
gi|393403267|dbj|BAM27759.1| 16S rRNA-processing protein RimM [Corynebacterium ulcerans 0102]
Length = 189
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + GR+ +E +L GR H G
Sbjct: 27 IGRVVKSHGIKGEVAVEVTTDEPDIRFA------VGEVLNGRQGKKEHRLTIATGRVHQG 80
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + + E+G FY +L G+ V+ + G+ +G
Sbjct: 81 R--LLIKFEEIPDRTAADSLRGTQFFAEPLENDDDEEG-FYDHELEGLEVL--QDGKKIG 135
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ V + A ++L V G+ V +PFV IVP VD+
Sbjct: 136 EITGVMHGPAGEILEVEL-------------------TGGKQVLVPFVHAIVPEVDLEAG 176
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 177 TCTITPPDGLLEL 189
>gi|120403181|ref|YP_953010.1| 16S rRNA-processing protein RimM [Mycobacterium vanbaalenii PYR-1]
gi|166226458|sp|A1T754.1|RIMM_MYCVP RecName: Full=Ribosome maturation factor RimM
gi|119955999|gb|ABM13004.1| 16S rRNA processing protein RimM [Mycobacterium vanbaalenii PYR-1]
Length = 172
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE++V TD PE RF R G E RE + R
Sbjct: 1 MDLV-VGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRPARGGAE--REFVIESVRS 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H + ++ +G+ + A L G+ L + P +ED EFY L GM V G
Sbjct: 58 HGDRM--LIRLQGVGDRDAADALRGTLFLVDSAELPPIEDPDEFYDHQLEGM-AVSTTGG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ VGTV V ++ A +LL V D G V +PFV IV V
Sbjct: 115 QPVGTVAEVLHTAAGELLAV-------------------RDPDGAEVLVPFVSAIVVSVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ ++I PP+GLL+L
Sbjct: 156 LADNAIEIDPPEGLLDL 172
>gi|184200710|ref|YP_001854917.1| putative 16S rRNA processing protein RimM [Kocuria rhizophila
DC2201]
gi|238689200|sp|B2GFY3.1|RIMM_KOCRD RecName: Full=Ribosome maturation factor RimM
gi|183580940|dbj|BAG29411.1| putative 16S rRNA processing protein RimM [Kocuria rhizophila
DC2201]
Length = 191
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 67/206 (32%), Positives = 91/206 (44%), Gaps = 34/206 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V V + HG++GE++V+ TD P+ RF PG+ Q G + D RE
Sbjct: 3 VRVARIGKPHGVRGEVTVELFTDDPQARFA-PGSVLSIQHARGGRR-GQGSAADAREPLA 60
Query: 138 QKSWILT------------FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
+S +T FE I A G L A D P LED E++ DL+G+
Sbjct: 61 VQSLTVTGHRWNKDVLVARFEEISDRNAAEAARGLELFAEVADLP-LEDDEWHQDDLLGL 119
Query: 186 RVVMKETGEL-VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPF 244
V GE +GTV + A DLL + GR V +PF
Sbjct: 120 VAVDLTRGEARIGTVKALIQGSAQDLLEI------------------TPQGGGRTVLVPF 161
Query: 245 VEEIVPIVDMNGREMQITPPKGLLEL 270
VEEIVP VD++ + ++PP GLLEL
Sbjct: 162 VEEIVPEVDLDRGLVLVSPPPGLLEL 187
>gi|295696072|ref|YP_003589310.1| 16S rRNA processing protein RimM [Kyrpidia tusciae DSM 2912]
gi|295411674|gb|ADG06166.1| 16S rRNA processing protein RimM [Kyrpidia tusciae DSM 2912]
Length = 175
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HGL+GE+ + P TDFPE+RF WL G E+++ R+H +
Sbjct: 10 VGVVVGTHGLRGEVRIFPRTDFPEVRFRQGSVLWLDG---GTGPAMELRVEKARKH--KN 64
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F G +++ P G L E L +G +Y LVG RVV E G +G +
Sbjct: 65 VFIVQFAGFHSIQAVEPWKGRELKVPESALMPLPEGRYYIHQLVGCRVV-DEHGRWLGEL 123
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V GAND+ V + +++ +P + +V V + R M
Sbjct: 124 SEVLQPGANDVYVVRRPGAKDLL-------------------VPAIPSVVKRVSVEDRLM 164
Query: 260 QITPPKGLLEL 270
++ P+GL EL
Sbjct: 165 VVSLPEGLEEL 175
>gi|363420005|ref|ZP_09308101.1| 16S rRNA-processing protein RimM [Rhodococcus pyridinivorans AK37]
gi|359736297|gb|EHK85243.1| 16S rRNA-processing protein RimM [Rhodococcus pyridinivorans AK37]
Length = 196
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 28/215 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR + + E + REH G+
Sbjct: 5 VGRVAKSHGIRGEVVVEVRTDEPEERFAVGAV--LRGRKPRDRHLHEYTVEAAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVM----KETGE 194
+L +GID + A L G + D P +D EFY +L G+ V + + G
Sbjct: 62 -LLLRLQGIDGRDAADALRGVLFVVDSADLPPSDDPDEFYDHELEGLTVRIVAGRPDGGT 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV V ++ A +LL + G L+ +PFV EIVP V +
Sbjct: 121 EVGTVREVLHTAAGELLSI----------------RPTGQERGELL-VPFVTEIVPTVSV 163
Query: 255 NGREMQITPPKGLLELNLRTDERSKKERRQLEWKE 289
++I PP GLL+ + E K+++ E K+
Sbjct: 164 RDGVIEIDPPDGLLDPDF--GEPPSKKKKSTEGKQ 196
>gi|296139336|ref|YP_003646579.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
gi|296027470|gb|ADG78240.1| 16S rRNA processing protein RimM [Tsukamurella paurometabola DSM
20162]
Length = 173
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 25/191 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI V TD PELRF G ++ ++T + + REH G+
Sbjct: 5 VGRVAKSHGIRGEIVVDVRTDSPELRFAD-GAVLTGRRPRAKDT-QTYTVAASREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ EG+ A L G+ + D +P + EFY +L G+ V + G VG
Sbjct: 62 -LLVRLEGVTDRTAADELRGTLFVIDSADVQPSDDPDEFYDHELEGLAVRTAD-GTEVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ V + +LL V A D GR + IPFV IVP+VD+ G
Sbjct: 120 IAEVLHPPGGELLSV-----------------KAPD--GREILIPFVTAIVPVVDVAGGF 160
Query: 259 MQITPPKGLLE 269
++I PP+GLL+
Sbjct: 161 IEIDPPEGLLD 171
>gi|118469073|ref|YP_886777.1| 16S rRNA-processing protein RimM [Mycobacterium smegmatis str. MC2
155]
gi|399986790|ref|YP_006567139.1| ribosome maturation factor rimM [Mycobacterium smegmatis str. MC2
155]
gi|166226453|sp|A0QV39.1|RIMM_MYCS2 RecName: Full=Ribosome maturation factor RimM
gi|118170360|gb|ABK71256.1| 16S rRNA processing protein RimM [Mycobacterium smegmatis str. MC2
155]
gi|399231351|gb|AFP38844.1| Ribosome maturation factor rimM [Mycobacterium smegmatis str. MC2
155]
Length = 173
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V+ TD PE RF PG + G E RE + R
Sbjct: 1 MDLV-VGRVVKAHGISGEVVVEIRTDDPEARFA-PGAVLRGRPRSGAE--REYTIESVRA 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ G+ A L G+ L + P ++D EFY +L GMRVV +
Sbjct: 57 HGGR--LLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDA 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V V ++ ++L V +D GR + +PFV IV V
Sbjct: 115 P-VGKVAEVLHTAGGEILAV------------------KADEGGREILVPFVGAIVTSVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ I PP+GLL+L
Sbjct: 156 RQNATIVIDPPEGLLDL 172
>gi|237785765|ref|YP_002906470.1| 16S rRNA processing protein [Corynebacterium kroppenstedtii DSM
44385]
gi|237758677|gb|ACR17927.1| 16S rRNA processing protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 215
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 102/229 (44%), Gaps = 46/229 (20%)
Query: 69 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTP--------GTRWLRQQVLG 120
+ SA ++V +G V HG++GE V+P+TD PE RF G R R G
Sbjct: 5 DNSADDPNYVQIGRVVKPHGVRGEFVVEPTTDDPEGRFAVGSVVKAMPVGGRQRRNG--G 62
Query: 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFY 178
+ + + R H G+ I+ E I A L G +A P ++ EFY
Sbjct: 63 SQEPFTLTVASVRGHQGR--IIMKAEEIPDRNAAESLRGVRFVAE----PVIDHSGDEFY 116
Query: 179 TRDLVGMRVVM-----------------KETGELVGTVVNVFNSGANDLLHVMCYSSVNV 221
+L G+ V+ + E +G V NV A LL V
Sbjct: 117 DFELEGLHVLTVGPVSAEEAHARAYEGAQPEPEDIGIVKNVLRGPAQRLLEVEI------ 170
Query: 222 IEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
E++ +ASD + R V IPFV+ IVPIVD++ + +TPP+GLL+L
Sbjct: 171 -----ESADTASDGAPRTVLIPFVQAIVPIVDIDNEAIVVTPPEGLLDL 214
>gi|375094077|ref|ZP_09740342.1| 16S rRNA processing protein RimM [Saccharomonospora marina XMU15]
gi|374654810|gb|EHR49643.1| 16S rRNA processing protein RimM [Saccharomonospora marina XMU15]
Length = 170
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 87/195 (44%), Gaps = 31/195 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW--LRQQVLGRETIREVKLIDGREH 135
V VG V HGL GE++V TD P RF LR V R T+ V R H
Sbjct: 3 VVVGRVAKAHGLHGELAVDVRTDSPRERFAQGKVLLASLRDGVTKRVTVAAV-----RPH 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGE 194
G+ ++ F A L G+ LL D P++ED EFY +L G+R + + G
Sbjct: 58 GGR--LLVRFAEAQGRTAAEELRGAMLLVDTADLPQIEDPDEFYDHELEGLRAELTD-GT 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
++GTV V +S +LL A D +PFV IV +VD+
Sbjct: 115 VIGTVREVIHSPGGELL--------------------AVDRDDHEALVPFVAAIVVLVDV 154
Query: 255 NGREMQITPPKGLLE 269
G + I PP+GLL+
Sbjct: 155 TGGRVVIDPPEGLLD 169
>gi|270284299|ref|ZP_05965884.2| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
gi|270277505|gb|EFA23359.1| 16S rRNA processing protein RimM [Bifidobacterium gallicum DSM
20093]
Length = 215
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/206 (32%), Positives = 94/206 (45%), Gaps = 34/206 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D + V V GL+GE++V+ TD PE RF PG+ + G +T + R
Sbjct: 20 MDLLRVARVGRAQGLKGEVTVQSFTDEPEYRF-EPGSELYTKD--GEQT-----FVVERS 71
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMK--- 190
+ WIL FEG+D A + G+ L D + LE+ +Y +DLVG+ V M
Sbjct: 72 RSMKNRWILKFEGVDDRTAAEAINGTVLYGEADDAEDMLEEDVWYAKDLVGLEVRMAPDN 131
Query: 191 ----ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV----WI 242
E L+G VV+V + G LL V V DA G +V +
Sbjct: 132 LLGLEEDRLIGKVVDVID-GPQWLLKVRLAEPVR-------------DADGVVVEKTALV 177
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLL 268
PFVE+IV +D + I PP GL+
Sbjct: 178 PFVEQIVTEIDPEQQVALINPPGGLI 203
>gi|268316591|ref|YP_003290310.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
gi|262334125|gb|ACY47922.1| 16S rRNA processing protein RimM [Rhodothermus marinus DSM 4252]
Length = 179
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 32/195 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR--ETIREVKLIDGREHPG 137
+GYV HG++G V P TD P RF T L +GR ET R V+L + P
Sbjct: 12 MGYVARAHGVRGAFKVVPETDDPT-RFET-----LETIYVGRSPETARPVRLERVQYQPT 65
Query: 138 QKSWILTFEGIDTVEQ--ARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ I+ + + ++ A+ L G + AR D P L +GEF+ DL+G+R V E GE
Sbjct: 66 RRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLPPLAEGEFFLHDLIGLR-VETEAGET 124
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR-LVWIPFVEEIVPIVDM 254
VGTV+ V A+ L++V+ GR +P VE V +D+
Sbjct: 125 VGTVIEVLEMPAH-LIYVV-------------------GRPGRPHAMVPDVEVFVRELDL 164
Query: 255 NGREMQITPPKGLLE 269
GR + I P +GLL+
Sbjct: 165 EGRRLVIRPIEGLLD 179
>gi|284802239|ref|YP_003414104.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284995381|ref|YP_003417149.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
gi|404284289|ref|YP_006685186.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2372]
gi|404411094|ref|YP_006696682.1| 16S rRNA processing protein [Listeria monocytogenes SLCC5850]
gi|404413871|ref|YP_006699458.1| 16S rRNA processing protein [Listeria monocytogenes SLCC7179]
gi|405758844|ref|YP_006688120.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2479]
gi|284057801|gb|ADB68742.1| hypothetical protein LM5578_1995 [Listeria monocytogenes 08-5578]
gi|284060848|gb|ADB71787.1| hypothetical protein LM5923_1946 [Listeria monocytogenes 08-5923]
gi|404230920|emb|CBY52324.1| 16S rRNA processing protein [Listeria monocytogenes SLCC5850]
gi|404233791|emb|CBY55194.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2372]
gi|404236726|emb|CBY58128.1| 16S rRNA processing protein [Listeria monocytogenes SLCC2479]
gi|404239570|emb|CBY60971.1| 16S rRNA processing protein [Listeria monocytogenes SLCC7179]
Length = 169
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTNLEENEFYFHEIIGCTVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++++ +
Sbjct: 117 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINIDDQ 157
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 158 KITIEVMEGLLD 169
>gi|336391216|ref|ZP_08572615.1| 16S rRNA processing protein RimM [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 176
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 30/196 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ VG + + HG++GE+ V +TDFPE RF PG + L + G+ VK H
Sbjct: 5 YYTVGKIVNTHGIRGEVRVMATTDFPEERFQ-PGAK-LYVKPAGKTQALAVK-----THR 57
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGE 194
K++ +L+F + + PL G L D+ +L E FY RD++G+++V + TG
Sbjct: 58 RHKNFNLLSFTELPDLTAVEPLKGQMLYVAGEDQHQLAADEGFYYRDIIGLKIVDQTTGA 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVW-IPFVEEIVPIVD 253
+GTV + + GAND+ V G+ W +P+++++V V+
Sbjct: 118 DLGTVKEILSPGANDVWVVA--------------------RPGKKDWLLPYIKQVVLDVN 157
Query: 254 MNGREMQITPPKGLLE 269
+ ++ + P+GL++
Sbjct: 158 LAAKKAIVDLPEGLID 173
>gi|418293706|ref|ZP_12905612.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379065095|gb|EHY77838.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 178
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIRE 126
TSA D V +G + SVHG++G++ V FT P L R+ L R + +++
Sbjct: 4 TSAPADDLVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLGYRRWTLRRGDEVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
++LI GR K + T +G+D E AR + + P+L+DGE+Y L+G++
Sbjct: 56 IELIKGRLQ--GKILVATLKGLDDREVARTYADFEICVPRSELPDLDDGEYYWYQLLGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V + +L+G V ++ +GAND+L V + + + D RL +P+ +
Sbjct: 114 -VFNQAAQLLGVVDHLLETGANDVLVV-------------QPCAGSLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
V +D+ EMQ+
Sbjct: 158 PCVLKIDLEAGEMQV 172
>gi|333395997|ref|ZP_08477814.1| 16S rRNA processing protein RimM [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|420146779|ref|ZP_14654151.1| Ribosome maturation factor RimM [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398400353|gb|EJN53915.1| Ribosome maturation factor RimM [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 176
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 30/196 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ VG + + HG++GE+ V +TDFPE RF PG + L + G+ VK H
Sbjct: 5 YYTVGKIVNTHGIRGEVRVMATTDFPEERFQ-PGAK-LYVKPAGKTQALTVK-----THR 57
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGE 194
K++ +L+F + + PL G L D+ +L E FY RD++G+++V + TG
Sbjct: 58 RHKNFNLLSFTELPDLTAVEPLKGQMLYVAGEDQHQLAADEGFYYRDIIGLKIVDQTTGA 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVW-IPFVEEIVPIVD 253
+GTV + + GAND+ V G+ W +P+++++V V+
Sbjct: 118 DLGTVKEILSPGANDVWVVA--------------------RPGKKDWLLPYIKQVVLDVN 157
Query: 254 MNGREMQITPPKGLLE 269
+ ++ + P+GL++
Sbjct: 158 LAAKKAIVDLPEGLID 173
>gi|289675161|ref|ZP_06496051.1| 16S rRNA-processing protein RimM, partial [Pseudomonas syringae pv.
syringae FF5]
Length = 171
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 22/185 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVDKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDM 254
+DM
Sbjct: 162 LAIDM 166
>gi|427405530|ref|ZP_18895735.1| 16S rRNA processing protein RimM [Selenomonas sp. F0473]
gi|425708371|gb|EKU71410.1| 16S rRNA processing protein RimM [Selenomonas sp. F0473]
Length = 175
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + +G + + HG+ G++ V P TDFPE RF LR+ ++G E + I+ R
Sbjct: 11 DRIVIGRIGAAHGIAGDVRVIPLTDFPE-RFAD-----LREVMVGDELLH----IE-RTK 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P K+ ++ F E A+ L G L D LE+GE+Y D+VG+ V E L
Sbjct: 60 PQGKNILMRFREYPAREDAQRLTGRLLTVARADAAPLEEGEYYVFDIVGLSVC-DENDAL 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV NV +G+ND+ +V +GSE + IP + +V +D+
Sbjct: 119 LGTVENVIRTGSNDVY------AVRTEDGSE-------------LLIPALRSVVKQIDIG 159
Query: 256 GREMQITPPKGLLEL 270
M + P + E+
Sbjct: 160 AGRMVVCLPDDVDEM 174
>gi|260893267|ref|YP_003239364.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
gi|260865408|gb|ACX52514.1| 16S rRNA processing protein RimM [Ammonifex degensii KC4]
Length = 169
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
DF+ VG + + HG +G + V P TDFPE RF G + + GR T VK R
Sbjct: 4 DFITVGEIVAPHGYRGALKVLPLTDFPE-RFL--GMKEAMVLLKGRRTTYTVK----RAR 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K +L G++ +E+A L G + + L G +Y DL+GM V +E G
Sbjct: 57 LHGKFVLLELVGVERMEEAEALRGGLVQVPREEVYPLPPGHYYIFDLIGMEVFTEE-GAF 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + V ++ AND+ SV EG E + IP ++ +V VD+
Sbjct: 116 LGKIEAVLSTRANDVF------SVRSPEGKE-------------ILIPALKTVVCSVDVP 156
Query: 256 GREMQITPPKGLL 268
GR+M + P+GLL
Sbjct: 157 GRKMTVKLPEGLL 169
>gi|374608476|ref|ZP_09681275.1| 16S rRNA processing protein RimM [Mycobacterium tusciae JS617]
gi|373554008|gb|EHP80595.1| 16S rRNA processing protein RimM [Mycobacterium tusciae JS617]
Length = 171
Score = 76.3 bits (186), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 91/197 (46%), Gaps = 28/197 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+ V TD PE RF PGT LR + G T R + R
Sbjct: 1 MDLV-VGRVVKAHGVTGELVVDVRTDDPETRFA-PGTS-LRARPKG-GTERRFVVDSARP 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ +G+ + A L G+ L + P + D EFY L G+RV G
Sbjct: 57 HGGR--LLVRLDGVADRDSADSLRGALFLVDSAELPAIADPDEFYDHQLEGLRV-RTTAG 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VGTV V ++ A +LL V R V +PFV IV V
Sbjct: 114 ADVGTVAEVLHTAAGELLSVR--------------------TEDREVLVPFVSAIVTSVS 153
Query: 254 MNGREMQITPPKGLLEL 270
+ + ++I PP+GLL+L
Sbjct: 154 LADQIIEIDPPEGLLDL 170
>gi|291563272|emb|CBL42088.1| 16S rRNA processing protein RimM [butyrate-producing bacterium
SS3/4]
Length = 171
Score = 76.3 bits (186), Expect = 6e-11, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG + S HG++GE+ V P+TD +RF L LGR RE+K+ R+
Sbjct: 4 YLRVGVITSPHGVRGEVKVYPTTD-DVMRFKKLDKVILD---LGRGETRELKI---RQVK 56
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K+ IL F+G+DT+ + LL LE+ EF+ DL+G+ VV E GE
Sbjct: 57 FFKNMVILKFDGVDTMNEVEGWRQKDLLITRDQAIPLEEDEFFITDLIGLNVVTDE-GET 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ +V +GAND V C V EG E + +P + + + VD++
Sbjct: 116 LGTLTDVMETGAND---VYC---VKTPEGKE-------------LLLPAIRDCILDVDLD 156
Query: 256 GREMQITPPKGLLEL 270
EM + GLL+L
Sbjct: 157 KEEMLVHVLPGLLDL 171
>gi|373857301|ref|ZP_09600043.1| 16S rRNA processing protein RimM [Bacillus sp. 1NLA3E]
gi|372452951|gb|EHP26420.1| 16S rRNA processing protein RimM [Bacillus sp. 1NLA3E]
Length = 174
Score = 76.3 bits (186), Expect = 6e-11, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 22/192 (11%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + +VHGL+GE+ V +TDF RF +L + E+K++ R H
Sbjct: 4 WFNVGKIVNVHGLKGEVRVISTTDFVAQRFKPGNHLFLFMPGANSNSPIELKVVSHRTHK 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +LTFEG + V L E L++GEFY ++VG +V GE +
Sbjct: 64 NFE--LLTFEGFEDVNLVEKFRDGILKVPEDQLGALDEGEFYFHEIVGC-LVCTVHGEEI 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V + GAND V VI+ +GR + IP++ +IV +D+
Sbjct: 121 GKVTEILTPGAND---------VWVIK----------PKTGRDILIPYIAQIVKKIDVKE 161
Query: 257 REMQITPPKGLL 268
+ + I P +GLL
Sbjct: 162 KIILIEPMEGLL 173
>gi|336395270|ref|ZP_08576669.1| 16S rRNA processing protein RimM [Lactobacillus farciminis KCTC
3681]
Length = 168
Score = 76.3 bits (186), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V P TDFP+ RF + +L+ + + + P +
Sbjct: 8 VGTIVNTHGIKGELRVIPITDFPKDRFKSGAKLFLKDKT---------EFVVESSCPHKN 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++ +G D + V S L A + +LEDGEF ++G+ V+ K GE VG +
Sbjct: 59 FVLVKLKGYDNINDVEKFVKSELFANGEEVSDLEDGEFLYSQIIGLNVIDKNLGE-VGKI 117
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ G+ND+ V + + +P++++++ VD+ +E+
Sbjct: 118 TEIIELGSNDVWVV-------------------KSPKYKEILLPYIDDVIKEVDLENKEV 158
Query: 260 QITPPKGLLE 269
++ P GL++
Sbjct: 159 KVEIPDGLID 168
>gi|312194951|ref|YP_004015012.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
gi|311226287|gb|ADP79142.1| 16S rRNA processing protein RimM [Frankia sp. EuI1c]
Length = 178
Score = 76.3 bits (186), Expect = 6e-11, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 36/200 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G+++V+ TD P+ RF PG++ L + G + + E D R H G+
Sbjct: 7 VGRIGKPHGVRGDVTVEVRTDLPDRRFA-PGSK-LDRSGGGPDLVIE----DSRWHSGR- 59
Query: 140 SWILTFEGIDTVEQARPLVGSTL-----LAREGDRPELED--GEFY-TRDLVGMRVVMKE 191
++ FEG+ A L G L LA + P+ D GEF+ RDLVG+R V +
Sbjct: 60 -LLVRFEGVADRTGAESLRGVVLTIDADLAGDAVDPDEADEGGEFWWDRDLVGLRAVTPD 118
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G +G V +V ++ A +LL ++ G E +PFV EIVP
Sbjct: 119 -GSPLGEVTDVVHTAAGELL------AIGTPTGGEHL-------------VPFVREIVPT 158
Query: 252 VDMNGREMQITPPKGLLELN 271
VD G + + P GLL+L+
Sbjct: 159 VDRAGGLLVVDAPPGLLDLD 178
>gi|16803833|ref|NP_465318.1| 16S rRNA-processing protein RimM [Listeria monocytogenes EGD-e]
gi|386044101|ref|YP_005962906.1| 16S rRNA processing protein RimM [Listeria monocytogenes 10403S]
gi|386050770|ref|YP_005968761.1| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-561]
gi|386054047|ref|YP_005971605.1| 16S rRNA processing protein RimM [Listeria monocytogenes Finland
1998]
gi|21362860|sp|Q8Y6A2.1|RIMM_LISMO RecName: Full=Ribosome maturation factor RimM
gi|16411247|emb|CAC99871.1| lmo1793 [Listeria monocytogenes EGD-e]
gi|345537335|gb|AEO06775.1| 16S rRNA processing protein RimM [Listeria monocytogenes 10403S]
gi|346424616|gb|AEO26141.1| ribosome maturation factor rimM [Listeria monocytogenes FSL R2-561]
gi|346646698|gb|AEO39323.1| 16S rRNA processing protein RimM [Listeria monocytogenes Finland
1998]
gi|441471547|emb|CCQ21302.1| Ribosome maturation factor RimM [Listeria monocytogenes]
gi|441474678|emb|CCQ24432.1| Ribosome maturation factor RimM [Listeria monocytogenes N53-1]
Length = 172
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKETQLTNLEENEFYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP++ ++V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGADKKEK----------LIPYIADVVKEINIDDQ 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|392376124|ref|YP_003207957.1| 16S rRNA processing protein [Candidatus Methylomirabilis oxyfera]
gi|258593817|emb|CBE70158.1| 16S rRNA processing protein, putative function [Candidatus
Methylomirabilis oxyfera]
Length = 175
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V GL GE+ V+P D + T LR T V+ + R +
Sbjct: 9 LGRVVKAWGLNGEVKVQPYADSIVIA-AGAATLHLRAA-----TGDLVEYVVERVRQVGR 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+W+L G+ T+EQA LVG LL + P L DG +Y DL+G+RVV E G +G +
Sbjct: 63 AWVLQLRGVQTIEQAEQLVGRELLISKSTAPTLPDGTYYHADLIGLRVV-TEDGRELGRI 121
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V++ +GAND V V+ G G +P E+V VD+ + M
Sbjct: 122 VDILETGAND---------VYVVHG-----------GGSEWLVPATREVVRKVDLARKMM 161
Query: 260 QITPPKGLLE 269
I +G++E
Sbjct: 162 LIHLLEGMIE 171
>gi|219111979|ref|XP_002177741.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410626|gb|EEC50555.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 341
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 26/216 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+++VG V HG+ G + VKP+T FP R G + L+ + R+V L++G+
Sbjct: 129 YIEVGIVRGAHGVHGWVKVKPTTSFPIDRLCVAGIKHLKPP--KKRAPRKVLLLEGKRRN 186
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK-----E 191
++ +++ E I+ ++A L GS L RE ++ + E+ DLVG V + E
Sbjct: 187 AEE-YLIKLEQINDRDEALKLRGSLLYVREEEKMATDQEEYMVSDLVGSEVFLDTLDTVE 245
Query: 192 TGELVGTVVNVFNSG--------ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
+G V V + +D+L V V+ ++ +S D LV IP
Sbjct: 246 NPLFLGVVNGVVFADEMCSIPGLGHDMLEV-------VLRKGQDGMASLRD---ELVLIP 295
Query: 244 FVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSK 279
V +IV V + I PP GLL+L +ER+K
Sbjct: 296 MVPQIVTHVSAAKGVIHINPPSGLLDLTYLREERAK 331
>gi|296268965|ref|YP_003651597.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
gi|296091752|gb|ADG87704.1| 16S rRNA processing protein RimM [Thermobispora bispora DSM 43833]
Length = 171
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 90/193 (46%), Gaps = 29/193 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++GE++V+ TD PE RF PG+ VL + L R +
Sbjct: 5 VGRIGRPHGVRGEVTVEVRTDEPEARFA-PGS------VLATDPADAGPLTVERARWHRG 57
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ F G+ A L G+ L+ D P D EF+ +L+G+ VV + G+ VG
Sbjct: 58 ILLVAFAGVPDRNAAERLRGTLLVIDSADIPPSGDPDEFHDHELLGLAVVTTD-GQRVGE 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V + G DLL V SG V++PFV+ IVP VD
Sbjct: 117 VADVLHHG-QDLLVV-------------------RRPSGEEVYVPFVKAIVPEVDPGAGR 156
Query: 259 MQITPPKGLLELN 271
+ I PP GLLELN
Sbjct: 157 LVIDPPPGLLELN 169
>gi|289522292|ref|ZP_06439146.1| 16S rRNA processing protein RimM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289504128|gb|EFD25292.1| 16S rRNA processing protein RimM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 176
Score = 75.9 bits (185), Expect = 6e-11, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 38/202 (18%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-------LRFTTP-GTRWLRQQVLGRETIREV 127
+ V VG + HG++GE+ + P TDFPE L P G+ W R TI +
Sbjct: 5 ELVTVGRIVGAHGIKGELRLLPLTDFPERFKDMDYLDVYRPNGSFWCRL------TINSI 58
Query: 128 KLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
REH G+ +I+ + I + A L G ++ R +R EL DG ++ DL+G+ V
Sbjct: 59 -----REHVGKGQFIVGVDEIVDRDAAESLRGGLVMVRPQERVELPDGFYWIDDLLGLAV 113
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
V +TG +GT+V + +G+ND V V+E + G+ +P + E
Sbjct: 114 VDYDTGNNLGTLVEIMPTGSND---------VYVVETEK----------GKRHMLPAISE 154
Query: 248 IVPIVDMNGREMQITPPKGLLE 269
+V ++++ +++ +GL E
Sbjct: 155 VVKEINIDNGFVKVHLLEGLWE 176
>gi|84997315|ref|XP_953379.1| 16S rRNA processing protein (RimM homologue) [Theileria annulata
strain Ankara]
gi|65304375|emb|CAI76754.1| 16S rRNA processing protein (RimM homologue), putative [Theileria
annulata]
Length = 235
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+V VG + +GL+G + VK T PE+R PG R+L+ E + + L+ GR
Sbjct: 90 DYVVVGKILGTYGLKGHVKVKSYTSHPEIRLCEPGYRYLKIP-FNDERVIPINLVTGRFS 148
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ +I+ FEG D ++Q++ + + L P LE+ +Y RD++G+ + +
Sbjct: 149 GNKDVYIVKFEGFDNIQQSQRITNTYLTVPLSIMPPLEENTYYARDIIGLGLYL 202
>gi|422608905|ref|ZP_16680864.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. mori
str. 301020]
gi|330894532|gb|EGH27193.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv. mori
str. 301020]
Length = 179
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++++L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVFSFTD-PIGNLLDYKTWTLRRE---GSVEKQLEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + +G+D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVAKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|429735330|ref|ZP_19269298.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 138
str. F0429]
gi|429159141|gb|EKY01659.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 138
str. F0429]
Length = 172
Score = 75.9 bits (185), Expect = 7e-11, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 35/188 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRET--IREVKLIDGREHPG 137
+G V + HG++G++ + P TDFPE RF LR+ ++G E I VK P
Sbjct: 18 IGRVGAPHGIRGDLRIIPLTDFPE-RFAA-----LREVMVGDELLHIESVK-------PQ 64
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++++ F E A+ L G L + L++GE+Y D+VG+ V E G ++G
Sbjct: 65 GKNFLMRFREYAVREDAQKLTGRLLTVARAEAAPLDEGEYYVFDIVGL-TVYDEEGRVLG 123
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV NV +G+ND+ V SE+ GR + IP + +V +D+ G
Sbjct: 124 TVENVLRTGSNDVYAVR----------SED---------GREILIPALRSVVREIDVPGG 164
Query: 258 EMQITPPK 265
M + P+
Sbjct: 165 RMTVRFPQ 172
>gi|422297426|ref|ZP_16385061.1| 16S rRNA-processing protein RimM [Pseudomonas avellanae BPIC 631]
gi|422587082|ref|ZP_16661753.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330872810|gb|EGH06959.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|407991168|gb|EKG33084.1| 16S rRNA-processing protein RimM [Pseudomonas avellanae BPIC 631]
Length = 179
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K ++ + +D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVVKLKDLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
+DM EM++
Sbjct: 162 LAIDMAAGEMKV 173
>gi|108798935|ref|YP_639132.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MCS]
gi|119868050|ref|YP_938002.1| 16S rRNA-processing protein RimM [Mycobacterium sp. KMS]
gi|126434535|ref|YP_001070226.1| 16S rRNA-processing protein RimM [Mycobacterium sp. JLS]
gi|123178993|sp|Q1BAK8.1|RIMM_MYCSS RecName: Full=Ribosome maturation factor RimM
gi|166226454|sp|A3PXV8.1|RIMM_MYCSJ RecName: Full=Ribosome maturation factor RimM
gi|166226455|sp|A1UEF4.1|RIMM_MYCSK RecName: Full=Ribosome maturation factor RimM
gi|108769354|gb|ABG08076.1| 16S rRNA processing protein RimM [Mycobacterium sp. MCS]
gi|119694139|gb|ABL91212.1| 16S rRNA processing protein RimM [Mycobacterium sp. KMS]
gi|126234335|gb|ABN97735.1| 16S rRNA processing protein RimM [Mycobacterium sp. JLS]
Length = 173
Score = 75.9 bits (185), Expect = 8e-11, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 26/197 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V +G V HG+ GE+ V+ TD P+ RF PG R LR + R + R
Sbjct: 1 MDLV-IGRVAKAHGVTGELVVEVRTDDPDARFV-PGAR-LRGRAPRGGAERAFVVESVRP 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ +L +G+ A L G+ L D P +E+ E+Y L G+ +V G
Sbjct: 58 HGGR--LLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGL-LVRTVDG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VGTV V ++ A +LL SV EG+E + +PFV IVP V
Sbjct: 115 VDVGTVAEVLHTAAGELL------SVKTPEGAE-------------ILVPFVTAIVPRVS 155
Query: 254 MNGREMQITPPKGLLEL 270
+ ++I PP+GLL+L
Sbjct: 156 LADGLVEIDPPEGLLDL 172
>gi|260881183|ref|ZP_05893339.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
gi|260849730|gb|EEX69737.1| 16S rRNA processing protein RimM [Mitsuokella multacida DSM 20544]
Length = 180
Score = 75.5 bits (184), Expect = 8e-11, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 37/193 (19%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK---LIDG 132
D V +G V + HG+ GE+ + P TDF E RF + ++L E+ + K L+
Sbjct: 16 DRVTIGKVGAAHGIHGEMRIIPLTDFTE-RFADMKEVMVGDELLHIESCKYHKQFILLKF 74
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
RE+P + E A L G L + LE+GEFYT D++G+ V ET
Sbjct: 75 REYPVR-------------EDAMRLTGRLLTVDRSEAVPLEEGEFYTFDIIGL-TVYDET 120
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G +GTV NV +G+ND+ A GR + IP ++ +V ++
Sbjct: 121 GNTLGTVENVLRTGSNDVYQ-------------------ARRPDGRELLIPALKAVVKVI 161
Query: 253 DMNGREMQITPPK 265
D+ G M + P+
Sbjct: 162 DVAGGRMVVDLPE 174
>gi|167758977|ref|ZP_02431104.1| hypothetical protein CLOSCI_01323 [Clostridium scindens ATCC 35704]
gi|336422976|ref|ZP_08603115.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663384|gb|EDS07514.1| 16S rRNA processing protein RimM [Clostridium scindens ATCC 35704]
gi|336006822|gb|EGN36854.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
5_1_57FAA]
Length = 168
Score = 75.5 bits (184), Expect = 9e-11, Method: Composition-based stats.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 39/199 (19%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRET----IREVKL 129
+ + VG + S HG++GE+ V P+TD + RF R L+ +L G+ET I VK
Sbjct: 3 ELLQVGVITSTHGIRGEVKVFPTTDDAK-RF-----RELKDVMLDTGKETLSLEIEGVKF 56
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
++ IL F+GID + L D ELE+ E++ D++GM+V+
Sbjct: 57 F-------KQFVILKFKGIDNINDVERYKRCPLFVNREDAVELEEDEYFIADMIGMKVIT 109
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
E GE GT+ +V +GAND V VI A G V IP ++E +
Sbjct: 110 DE-GEEFGTLKDVMETGAND---------VYVIR----------RADGGEVLIPAIKECI 149
Query: 250 PIVDMNGREMQITPPKGLL 268
VD+ GR M+I GL+
Sbjct: 150 LDVDIPGRLMKIHVMAGLV 168
>gi|242277677|ref|YP_002989806.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
gi|242120571|gb|ACS78267.1| 16S rRNA processing protein RimM [Desulfovibrio salexigens DSM
2638]
Length = 185
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 26/198 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++ + V V HGL+GE+ ++ D P L P ++ G++ R V + R+
Sbjct: 1 MEMLVVAEVVKPHGLRGEVCIESHADSPFLFDEVPCLYLAKK---GQKPRRFV-VRSSRK 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G+ +LTF+G++ +QA L G +L RE D PE D E Y +L GM V + E G
Sbjct: 57 HKGR--VLLTFKGVEDRDQAENLRGMEILVREADLPESGDDEVYMYELEGMSVEL-EDGT 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+VGT+ N + + + S A G+ + P VEE V VD+
Sbjct: 114 VVGTISNFILAPGQETWVI-------------------SSAEGKEILFPAVEEFVLSVDL 154
Query: 255 NGREMQITPPKGLLELNL 272
+ ++ + PP+GLL++ L
Sbjct: 155 DAEKVVVEPPEGLLDIYL 172
>gi|336179498|ref|YP_004584873.1| ribosome maturation factor rimM [Frankia symbiont of Datisca
glomerata]
gi|334860478|gb|AEH10952.1| Ribosome maturation factor rimM [Frankia symbiont of Datisca
glomerata]
Length = 208
Score = 75.5 bits (184), Expect = 9e-11, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 34/200 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE+++ TD PE RF PGT + T + + R H G
Sbjct: 35 VVVGRIGRPHGIRGEVTIDVRTDVPERRFA-PGTHLCGEP----PTATPLMVAVARWHAG 89
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLL-----AREGDRPELEDGE--FYTRDLVGMRVVMK 190
+ ++ FEG+ + A L G L A + ED ++ RDLVG+RVV
Sbjct: 90 R--LLVRFEGVGDRDAAEALRGRVLTIAAGQAGQAADDGDEDAGNLWWDRDLVGLRVVTV 147
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
+ + VGTVV+V ++ A +LL V GR V +PFV EIVP
Sbjct: 148 DDAD-VGTVVDVVHTPAGELLAV-------------------EHVGGREVLVPFVREIVP 187
Query: 251 IVDMNGREMQITPPKGLLEL 270
V++ + + PP GL +L
Sbjct: 188 TVEVPVGRIVVDPPPGLFDL 207
>gi|384515962|ref|YP_005711054.1| ribosome maturation factor [Corynebacterium ulcerans 809]
gi|334697163|gb|AEG81960.1| ribosome maturation factor [Corynebacterium ulcerans 809]
Length = 189
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + GR+ +E +L GR H G
Sbjct: 27 IGRVVKSHGIKGEVAVEVTTDEPDIRFA------VGEVLNGRQGKKEHRLTIATGRVHQG 80
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + + E+G FY +L G+ V+ + G+ +G
Sbjct: 81 R--LLIKFEEIPDRTAADSLRGTQFFAAPLENDDDEEG-FYDHELEGLEVL--QDGKKIG 135
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ V + A ++L V G+ V +PFV IVP VD+
Sbjct: 136 EITGVMHGPAGEILEVEL-------------------TGGKQVLVPFVHAIVPEVDLEEG 176
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 177 TCTITPPDGLLEL 189
>gi|325681250|ref|ZP_08160780.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
gi|324107172|gb|EGC01458.1| 16S rRNA processing protein RimM [Ruminococcus albus 8]
Length = 172
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 34/195 (17%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPEL--RFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++ G + SV GL+GE+ V+ D P+ F T + T E++ R
Sbjct: 4 LLEAGKIVSVFGLKGEVKVQAWCDTPDFLCEFDTLYYK--------SGTPVEIE----RS 51
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ ++ +GIDTVE+A+ + + +L + D EL++ ++ +DLVG++VV ++G
Sbjct: 52 RVQKNIVVMKIKGIDTVEEAQK-IRNRVLYIDRDDVELDENTYFVQDLVGLKVVDLDSGR 110
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
GT+ V +GAND+ H+ A G++ +IP + +V D+
Sbjct: 111 EYGTLTEVSETGANDVYHI-------------------KSADGKMYYIPAIPSVVAETDI 151
Query: 255 NGREMQITPPKGLLE 269
G M+ITP +GL +
Sbjct: 152 EGGVMKITPLEGLFD 166
>gi|227504775|ref|ZP_03934824.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
gi|227198625|gb|EEI78673.1| 16S rRNA-processing protein [Corynebacterium striatum ATCC 6940]
Length = 174
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVKLIDGREHPGQ 138
+G V HG++GE+SV+ +TD PE+RF RQ E TI+ V++ GR
Sbjct: 13 IGRVIKSHGIKGELSVEATTDEPEIRFAVGEVLHGRQGKKEHELTIKAVRVHKGR----- 67
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++TFE + A L G+ A D P+ + FY +L G+RV+ G +G
Sbjct: 68 --LLITFEEVKDRTAADSLRGTQFFAPPLDDPDDDG--FYDHELEGLRVI--HDGNDIGE 121
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V + + LL V SG+ IPFVEEIVP VD++
Sbjct: 122 VTGLTHGPTQSLLEVRL-------------------ESGKEALIPFVEEIVPEVDLDEGT 162
Query: 259 MQITPPKGLLEL 270
ITPP+GLL+L
Sbjct: 163 CTITPPEGLLDL 174
>gi|386725704|ref|YP_006192030.1| protein RimM [Paenibacillus mucilaginosus K02]
gi|384092829|gb|AFH64265.1| protein RimM [Paenibacillus mucilaginosus K02]
Length = 174
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ + P TDFPE RF PG++ L + T+ + R+H +
Sbjct: 8 VGKIVNTHGIRGELKIVPETDFPEERF-APGSKLLFVDP-EKGTVLPQTVESARDH--KT 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F+G + + G L E EL + EFY +++G VV E GE +GT+
Sbjct: 64 MYIVRFKGFTNINEVEKYKGWLLKVEEQYLSELPEDEFYHHEILGCTVVTDE-GEELGTI 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + GAND+ V G+ + +P+++E+V VD+ +++
Sbjct: 123 SEILSPGANDVWVV-------------------KRPKGKPLLLPYIDEVVLSVDIEAKKV 163
Query: 260 QITPPKGLLEL 270
+ +GLL+L
Sbjct: 164 TVHIMEGLLDL 174
>gi|375099438|ref|ZP_09745701.1| 16S rRNA processing protein RimM [Saccharomonospora cyanea NA-134]
gi|374660170|gb|EHR60048.1| 16S rRNA processing protein RimM [Saccharomonospora cyanea NA-134]
Length = 174
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG++GE++V+ TD PE RF PG + G + R + + R H G
Sbjct: 3 VVVGRVVKPHGIRGELTVEVRTDSPEERFV-PGAVLTARSRGG--STRPLTVAAVRPHGG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ F + A + G +LL D P ++D EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFTEVPDRSAAEEVRGVSLLVDAEDLPPIDDPDEFYDHELEGLRAELAD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV V +S +LL V EE+ + R V +PFV IVP VD+ G
Sbjct: 117 GTVREVVHSPGGELLAV----------DIEESGAR------REVLVPFVTAIVPRVDVVG 160
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 161 GRIVLDPPEGLLD 173
>gi|453068793|ref|ZP_21972064.1| 16S rRNA-processing protein RimM [Rhodococcus qingshengii BKS
20-40]
gi|452764976|gb|EME23241.1| 16S rRNA-processing protein RimM [Rhodococcus qingshengii BKS
20-40]
Length = 190
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR + T++ + R+H G+
Sbjct: 5 VGRVAKSHGIKGELVVEVRTDEPEDRFAVGSV--LRGRKPRESTLKSYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + +P + EFY +L G++VV+ + E VG+
Sbjct: 62 -LLLRLEGVSDRGDADALRGTLFVIDSSELKPSDDPDEFYDHELEGLKVVLTDGAE-VGS 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + +ASG L+ IPFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRTGEASGELL-IPFVAAIVTSVSIADGV 162
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 163 VVIEPPEGLLD 173
>gi|336325836|ref|YP_004605802.1| ribosome maturation factor [Corynebacterium resistens DSM 45100]
gi|336101818|gb|AEI09638.1| ribosome maturation factor [Corynebacterium resistens DSM 45100]
Length = 199
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 37/210 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GE+ V+ +TD PELRF + ++ G + + L + P
Sbjct: 9 LQIGRVIKPHGVRGEVVVEATTDQPELRFV------VGHELTGIQAGKSRTLTIAKIRPH 62
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV-----VMKET 192
Q ++TFE + QA L G A + P+ E +Y L G+RV V ++T
Sbjct: 63 QGRLLMTFEEVPDRTQAESLRGVRFFADPIEDPDEE--SYYDHQLEGLRVLNCGNVDEQT 120
Query: 193 GEL------------VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
+G V V +S A L V + E +E ++ G +
Sbjct: 121 AYARAYEGAQPEPTDIGEVTGVMHSPAGTTLEV------TIDEDTELPTA------GHTI 168
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
IPF IVPIVD++ + ITPP GLLEL
Sbjct: 169 LIPFRHAIVPIVDLDNDALVITPPDGLLEL 198
>gi|116671027|ref|YP_831960.1| 16S rRNA-processing protein RimM [Arthrobacter sp. FB24]
gi|171855198|sp|A0JXU0.1|RIMM_ARTS2 RecName: Full=Ribosome maturation factor RimM
gi|116611136|gb|ABK03860.1| 16S rRNA processing protein RimM [Arthrobacter sp. FB24]
Length = 197
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 30/187 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQV-LGRETIREVKLIDGREHPGQKSWILTF 145
HG++GE++V+ TD PE RF PGTR++ + G T+ + + +L F
Sbjct: 12 HGIRGEVTVQVLTDAPEDRFI-PGTRFVVEPASAGPLTVDSARW-------NKDILLLGF 63
Query: 146 EGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNS 205
EGI+T QA L G+ L + E +D +Y +LVG+ V + + +VGT+ +
Sbjct: 64 EGIETRNQAEALRGAKLFIETEELEEEDDEGWYEHELVGLDVRVGDA--VVGTISGLRTL 121
Query: 206 GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPK 265
DL+ V+E + G+ + IPFVEEIVP V++ + + +TPP
Sbjct: 122 PVQDLI---------VVESPD----------GKEILIPFVEEIVPEVNVGEKYILVTPPP 162
Query: 266 GLLELNL 272
GL E+N+
Sbjct: 163 GLFEINV 169
>gi|404398321|ref|ZP_10989905.1| 16S rRNA-processing protein RimM [Pseudomonas fuscovaginae UPB0736]
Length = 178
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 23/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ +++V+L
Sbjct: 4 TPASTDDLIVIGKIYSVHGVRGEVKVYSFTD-PIKNLLEYKTWTLRRE----GNVKQVEL 58
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR + K + +G++ E+AR L G + PEL DGE+Y L G++V+
Sbjct: 59 VSGRGN--DKFLVAKLKGLEDREEARLLAGYEICVPSNLFPELTDGEYYWYQLEGLKVI- 115
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
G+L G + ++ +G+ND++ V + + D RL +P+ E+ V
Sbjct: 116 DTLGQLFGKIDHLLETGSNDVMVV-------------KPCPGSLDDRERL--LPYTEQCV 160
Query: 250 PIVDMNGREMQI 261
VD+ EM++
Sbjct: 161 LAVDLAAGEMKV 172
>gi|452852399|ref|YP_007494083.1| Ribosome maturation factor rimM [Desulfovibrio piezophilus]
gi|451896053|emb|CCH48932.1| Ribosome maturation factor rimM [Desulfovibrio piezophilus]
Length = 206
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG V HG++GE +K D P L F + +L+ G + + L REH
Sbjct: 9 FIQVGGVAKPHGIRGEFCIKSYADSPSL-FGSVAALFLQD---GNKPPKPFVLRSWREHK 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G +L +G+D ++A L G +L E D P E+G+ Y +++G RV +++ +L
Sbjct: 65 GLV--LLKCQGVDDRDEAEALRGFAVLVHEDDLPAPEEGQHYLYEMLGCRVRLQDGADL- 121
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GT+ F + D ++ G+ + +P V E V VD++
Sbjct: 122 GTLEQFFETAEQDTWVIIT-------------------DDGKEILLPAVPEFVLDVDLDE 162
Query: 257 REMQITPPKGLLELNLRTDERSKKERRQ 284
+ + PP+GL++L L + KK+ R+
Sbjct: 163 EVILVDPPEGLIDLYLNPEPPQKKKPRR 190
>gi|401564271|ref|ZP_10805175.1| 16S rRNA processing protein RimM [Selenomonas sp. FOBRC6]
gi|400188988|gb|EJO23113.1| 16S rRNA processing protein RimM [Selenomonas sp. FOBRC6]
Length = 169
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 31/186 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V + HG+QG++ + P TDFPE RF LR+ ++G E + R P K
Sbjct: 15 IGRVGAAHGIQGDLRIIPLTDFPE-RFAA-----LREVMVGDELLHV-----ERVKPQGK 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ ++ F E+A+ L G L D L++GE+Y D+VG+ V + EL GTV
Sbjct: 64 NVLMRFREYAVREEAQRLTGRLLTVARADASPLDEGEYYVFDIVGLTVYDEANHEL-GTV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
NV +G+ND+ V A D GR + +P + V +D+ G M
Sbjct: 123 ENVIRTGSNDVYAV-----------------RAED--GREILVPALRTAVLAIDVAGGRM 163
Query: 260 QITPPK 265
+ P+
Sbjct: 164 TVRLPE 169
>gi|407977611|ref|ZP_11158448.1| 16S rRNA-processing protein RimM [Bacillus sp. HYC-10]
gi|407415864|gb|EKF37445.1| 16S rRNA-processing protein RimM [Bacillus sp. HYC-10]
Length = 174
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
LD+++VG + + HG++GE+ V TDFPE R+ ++ +Q G++ +V + R+
Sbjct: 3 LDWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQ--GQKEPLKVTVASHRQ 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ +LTFE + ++ +A L S L + L++GEFY +++G V E +
Sbjct: 61 H--KQFDLLTFEEVGSLNEAEQLKESILKVEKEHLGSLDEGEFYFHEIIGCE-VYDEEDK 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G + + GAND+ V DA IP++ +V +D+
Sbjct: 118 LIGQIKEILTPGANDVWVV--------------GRKGKKDA-----LIPYIPSVVKKIDI 158
Query: 255 NGREMQITPPKGLLE 269
+ +++ I +GL++
Sbjct: 159 SSKKVHIEVMEGLID 173
>gi|443289400|ref|ZP_21028494.1| 16S rRNA processing protein rimM [Micromonospora lupini str. Lupac
08]
gi|385887553|emb|CCH16568.1| 16S rRNA processing protein rimM [Micromonospora lupini str. Lupac
08]
Length = 184
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 94/207 (45%), Gaps = 43/207 (20%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGTR--------WLRQQVLGRETI 124
VG + HG++GE++V+ TD PE RF T PG + QV + TI
Sbjct: 5 VGRIGKPHGVRGEVTVEVRTDEPEARFAPGAVLRTEPGATPPPTSDEPGVPFQVPAKLTI 64
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLV 183
E + GR ++ FEGI A L G+ L+ D P + EF+ LV
Sbjct: 65 EEARFHQGRV-------LIAFEGILDRNTAEALRGTLLVVDSADVAPPDDPEEFHDHQLV 117
Query: 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
G+ VV GE +G V + ++ ++DLL V+ E GR IP
Sbjct: 118 GLAVVTP-AGEQLGEVARIDHAPSSDLL---------VLRRPE----------GRTALIP 157
Query: 244 FVEEIVPIVDMNGREMQITPPKGLLEL 270
FV IVP VD+ G + + PP GLL+L
Sbjct: 158 FVRAIVPEVDLAGGRVIVDPPAGLLDL 184
>gi|433446051|ref|ZP_20410182.1| 16S rRNA processing protein RimM [Anoxybacillus flavithermus
TNO-09.006]
gi|432000796|gb|ELK21688.1| 16S rRNA processing protein RimM [Anoxybacillus flavithermus
TNO-09.006]
Length = 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 27/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V TDF E R+ ++ + + EVK+ R H K
Sbjct: 9 VGKIVNTHGIRGEVRVISRTDFAEERYKIGNVLYI---FMENKPPVEVKVASHRVH---K 62
Query: 140 SW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
S+ +LTFEG D + P G+ + E L +GE+Y +++G VV E GE +G
Sbjct: 63 SFDLLTFEGYDNINLVEPFKGAMIKIPETQLQPLNEGEYYFHEIIGCTVV-TEDGEPIGE 121
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ + GAND+ V G V IP+++++V VD+ +
Sbjct: 122 IKEILTPGANDVWVV-------------------KRKKGGDVLIPYIDDVVKQVDVENKT 162
Query: 259 MQITPPKGLLE 269
+ I +GLL+
Sbjct: 163 ITIHVMEGLLD 173
>gi|212639587|ref|YP_002316107.1| 16S rRNA-processing protein RimM [Anoxybacillus flavithermus WK1]
gi|212561067|gb|ACJ34122.1| RimM protein, required for 16S rRNA processing [Anoxybacillus
flavithermus WK1]
Length = 174
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 27/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V TDF E R+ ++ + + EVK+ R H K
Sbjct: 9 VGKIVNTHGIRGEVRVISRTDFAEERYKIGNVLYI---FMENKPPVEVKVASHRVH---K 62
Query: 140 SW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
S+ +LTFEG D + P G+ + E L +GE+Y +++G VV E GE +G
Sbjct: 63 SFDLLTFEGYDNINLVEPFKGAIIKIPETQLQPLNEGEYYFHEIIGCTVV-TEDGEPIGE 121
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ + GAND+ V G V IP+++++V VD+ +
Sbjct: 122 IKEILTPGANDVWVV-------------------KRKKGGDVLIPYIDDVVKQVDVENKT 162
Query: 259 MQITPPKGLLE 269
+ I +GLL+
Sbjct: 163 ITIHVMEGLLD 173
>gi|403667647|ref|ZP_10932947.1| 16S rRNA-processing protein RimM [Kurthia sp. JC8E]
Length = 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ V TDFPE R+ GT+ L G + V + R+
Sbjct: 1 MNWYNVGKIVNTHGIRGEVRVISQTDFPEDRYEI-GTK-LGIFAPGAKHPTLVVIKTARK 58
Query: 135 HPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K++IL +FEG + GS L E ELE+ EFY ++VG V E G
Sbjct: 59 H---KNFILLSFEGYPNINDVEQFKGSVLKVNENYLAELEEDEFYYHEIVGCD-VFDEEG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G + +F +GAND+ +V ++G E ++P + E++ +D
Sbjct: 115 NEIGKIKEIFETGANDVW------TVKGVDGKEH-------------YLPVIYEVIKEID 155
Query: 254 MNGREMQITPPKGLL 268
+ + + I +GLL
Sbjct: 156 VENKRVTIELMEGLL 170
>gi|421894395|ref|ZP_16324884.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus IE-3]
gi|385272699|emb|CCG90256.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus IE-3]
Length = 171
Score = 74.7 bits (182), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 97/193 (50%), Gaps = 23/193 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +V + + GL+GE+ V TDFPE RF + + + ++ V + + +E
Sbjct: 1 MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKE 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G S+I+T EG++++ G L E +LE+GEFY ++G+ V+ E +
Sbjct: 61 YKG--SFIVTLEGMNSINDVEKFKGMILKVEENQLQDLEEGEFYLHQIIGLDVI--ENDQ 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ V + G ND+ V + +++ +P++++++ VD+
Sbjct: 117 KIGTIKEVLSYGPNDVWVVKRPNQNDLL-------------------LPYLKDVILNVDL 157
Query: 255 NGREMQITPPKGL 267
+Q++ P+GL
Sbjct: 158 EQGAVQVSVPEGL 170
>gi|358060979|ref|ZP_09147667.1| 16S rRNA-processing protein RimM [Staphylococcus simiae CCM 7213]
gi|357256554|gb|EHJ06914.1| 16S rRNA-processing protein RimM [Staphylococcus simiae CCM 7213]
Length = 167
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF ++RF T + ++ I V + R H G
Sbjct: 3 VEVGQIVNTHGIKGELKVKSNSDFTDIRFQPGETLTISHN---KQDIDYV-VKSHRIHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI + + L G+ + R+ D EL + EFY D++G V + +
Sbjct: 59 LH--MLTFEGITNINEIEHLKGNLIYQERDHDDIELGEHEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+++F +GAND V V+EG++E IP++ ++V +D++
Sbjct: 116 GRVIDIFETGAND---------VWVVEGAKE------------YLIPYIADVVKDIDIDN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>gi|431928224|ref|YP_007241258.1| 16S rRNA processing protein RimM [Pseudomonas stutzeri RCH2]
gi|431826511|gb|AGA87628.1| 16S rRNA processing protein RimM [Pseudomonas stutzeri RCH2]
Length = 178
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIRE 126
TSA D V +G + SVHG++G++ V FT P L R+ L R + +++
Sbjct: 4 TSAPVDDLVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLDYRRWTLRRGDEVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + T EG+D E AR + + P L+DGE+Y L G++
Sbjct: 56 VELVKGRLQ--GKILVATLEGLDDREVARTYADFEICIPRSELPALDDGEYYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ ++ +L+G V ++ +GAND+L V + + + D RL +P+ +
Sbjct: 114 VI-NQSAQLLGQVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EMQ+
Sbjct: 158 QCVLKIDLEVGEMQV 172
>gi|116492615|ref|YP_804350.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
gi|122265921|sp|Q03FW4.1|RIMM_PEDPA RecName: Full=Ribosome maturation factor RimM
gi|116102765|gb|ABJ67908.1| 16S rRNA processing protein RimM [Pediococcus pentosaceus ATCC
25745]
Length = 171
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 97/193 (50%), Gaps = 23/193 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +V + + GL+GE+ V TDFPE RF + + + ++ V + + +E
Sbjct: 1 MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKE 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G S+I+T EG++++ G L E +LE+GEFY ++G+ V+ E +
Sbjct: 61 YKG--SFIVTLEGMNSINDVEKFKGMILKVEEDQLQDLEEGEFYLHQIIGLDVI--ENDQ 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GT+ V + G ND+ V + +++ +P++++++ VD+
Sbjct: 117 KIGTIKEVLSYGPNDVWVVKRPNQNDLL-------------------LPYLKDVILNVDL 157
Query: 255 NGREMQITPPKGL 267
+Q++ P+GL
Sbjct: 158 EQGAVQVSVPEGL 170
>gi|78356144|ref|YP_387593.1| 16S rRNA-processing protein RimM [Desulfovibrio alaskensis G20]
gi|109893013|sp|Q313J8.1|RIMM_DESDG RecName: Full=Ribosome maturation factor RimM
gi|78218549|gb|ABB37898.1| 16S rRNA processing protein RimM [Desulfovibrio alaskensis G20]
Length = 176
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL---GRETIREVKLIDGR 133
+V +G + HGL+GE+ V D P L +++++ G+ ++ R
Sbjct: 4 YVQIGLITKPHGLRGEVCVVSYADSPFL---------MQERIFLQAGKGPCVPYRVRSSR 54
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G + +L EGID A L +L + PELED E Y D++G VV+ E G
Sbjct: 55 RHSGTE--LLLLEGIDDRNAAEKLRQHKVLIPHAELPELEDDEVYIEDILGFTVVLDEDG 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+GT + F++ E+ + G+ V P EE V +D
Sbjct: 113 STLGT-LTAFSAPT-----------------PEQEVWEITTPDGKEVLFPAAEEFVAEID 154
Query: 254 MNGREMQITPPKGLLELNL 272
++ ++ITPP GLLE+ L
Sbjct: 155 VDSETIRITPPPGLLEIYL 173
>gi|319790555|ref|YP_004152188.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
gi|317115057|gb|ADU97547.1| 16S rRNA processing protein RimM [Thermovibrio ammonificans HB-1]
Length = 190
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 28/189 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVKLIDGREHPGQ 138
+G V VHGL+GE+ VK +D E + + L + E T+ VK P +
Sbjct: 27 IGKVVGVHGLKGELKVKSESDIFERQLEAVDSLTLYRGTRKEEVTVESVK-------PYK 79
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+++ F+ I+ QA +G L E +R ELE+GEFY +L+G++ V E G +G
Sbjct: 80 DIYLIKFKEINDRSQAEETIGGELWIDENERVELEEGEFYYEELLGLK-VFTEDGRELGV 138
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ N+ A+ +L V + G+ V IPF+E+ V +D+ +
Sbjct: 139 IKNILEQPASHILEV-------------------EKSDGKTVLIPFIEQFVKEIDLKNGK 179
Query: 259 MQITPPKGL 267
+ ++ +G+
Sbjct: 180 VTVSLIEGM 188
>gi|429334417|ref|ZP_19215082.1| 16S rRNA-processing protein RimM [Pseudomonas putida CSV86]
gi|428760866|gb|EKX83115.1| 16S rRNA-processing protein RimM [Pseudomonas putida CSV86]
Length = 178
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG ++SVHG++GE+ V FT P L R L RE +++V+L+ G
Sbjct: 10 DLIVVGKIFSVHGVRGEVKV--------FSFTDPIDNLLQYRHWTLRREGVVKQVELVKG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R GQK + +G+D ++AR L G + P L + E+Y LVG+ V+ +
Sbjct: 62 R--SGQKDLVAKLKGLDDRDEARLLSGFEICISRSLLPNLANDEYYWYQLVGLSVI-NQD 118
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L G V ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 119 GQLFGKVDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTRQCVLAI 163
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 164 DLAAGEMRV 172
>gi|337750079|ref|YP_004644241.1| protein RimM [Paenibacillus mucilaginosus KNP414]
gi|379722925|ref|YP_005315056.1| protein RimM [Paenibacillus mucilaginosus 3016]
gi|336301268|gb|AEI44371.1| RimM [Paenibacillus mucilaginosus KNP414]
gi|378571597|gb|AFC31907.1| RimM [Paenibacillus mucilaginosus 3016]
Length = 174
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ + P TDFPE RF PG++ L + T+ + R+H +
Sbjct: 8 VGKIVNTHGIRGELKIVPETDFPEERF-APGSKLLFVDP-EKGTVLPQIVESARDH--KT 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F+G + + G L E EL + EFY +++G VV E GE +GT+
Sbjct: 64 MYIVRFKGFTNINEVEKYKGWLLKVEEQYLSELPEDEFYHHEILGCTVVTDE-GEELGTI 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + GAND+ V G+ + +P+++E+V VD+ +++
Sbjct: 123 SEILSPGANDVWVV-------------------KRPKGKPLLLPYIDEVVLNVDIEAKKV 163
Query: 260 QITPPKGLLEL 270
+ +GLL+L
Sbjct: 164 TVHIMEGLLDL 174
>gi|229491346|ref|ZP_04385170.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
gi|229321631|gb|EEN87428.1| 16S rRNA processing protein RimM [Rhodococcus erythropolis SK121]
Length = 190
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR + T++ + R+H G+
Sbjct: 5 VGRVAKSHGIKGELVVEVRTDEPEDRFAVGSV--LRGRKPRESTLKSYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G++VV+ + E VG+
Sbjct: 62 -LLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGAE-VGS 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A + SG L+ IPFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRAGETSGELL-IPFVAAIVTSVSIADGV 162
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 163 VVIEPPEGLLD 173
>gi|374298880|ref|YP_005050519.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
gi|332551816|gb|EGJ48860.1| Ribosome maturation factor rimM [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++V +G V HGL+GE SVK D P L G WL GR +++ G
Sbjct: 5 EWVLIGEVAKSHGLKGEFSVKYYADSP-LLLDEVGHVWL-STAGGRPKRFQIRAWRGH-- 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
Q +L GID +QA G+ +L +E + P E+G Y DL G+ V++ E G
Sbjct: 61 --QDRVLLWLTGIDGRDQADDWRGAEVLLKESELPAPEEGGVYLHDLQGLTVLL-EDGSR 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GT+ + I +E S +D G V P V E+VP +D+
Sbjct: 118 LGTITDF-------------------ILEPQELWSITTD-KGEEVLFPAVPELVPNIDLE 157
Query: 256 GREMQITPPKGLLELNLRTDE 276
+ I PP GLL+L L+ +E
Sbjct: 158 AGTVTIAPPPGLLDLYLKKEE 178
>gi|407275739|ref|ZP_11104209.1| 16S rRNA-processing protein RimM [Rhodococcus sp. P14]
Length = 185
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 64/198 (32%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG V HG++GE+ V+ TD PE RF R R+Q L T+ REH
Sbjct: 5 VGRVAKSHGIKGEVVVEIRTDEPEERFAVGAVLHGRKPREQTLQTYTVEA-----AREHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKE---- 191
G+ +L G+ A L G+ + D P +D EFY +L G+ V + E
Sbjct: 60 GR--LLLRVRGVTDRSAADALRGTLFVVDSADLPPSDDPDEFYDHELEGLSVRIVEGRPD 117
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G +GTV V ++ A +LL V A D L+ IPFV IVP
Sbjct: 118 AGTEIGTVREVLHTAAGELLSV----------------RPAGDEQRELL-IPFVTAIVPT 160
Query: 252 VDMNGREMQITPPKGLLE 269
V + ++I PP+GLL+
Sbjct: 161 VSLAAGVVEIDPPEGLLD 178
>gi|399521708|ref|ZP_10762448.1| Ribosome maturation factor rimM [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399110946|emb|CCH39008.1| Ribosome maturation factor rimM [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 178
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIRE 126
T A D + +G + SVHG++GE+ V FT P L R L R+ +++
Sbjct: 4 TPAVAEDLIVLGKIVSVHGVKGEVKV--------YSFTDPIDNVLDYRNWTLKRDGEVKK 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L GR K + +G+D E AR G + + PELEDGEFY L G++
Sbjct: 56 VELASGRLQ--GKVLVAKLKGLDDREIARTYAGFEICVPRSELPELEDGEFYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + +L+G V ++F +GAND++ V + + + D RL +P+
Sbjct: 114 VI-DQAEQLLGVVDHLFETGANDVMVV-------------KPCAGSLDDRERL--LPYTG 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EM++
Sbjct: 158 QCVLSIDLAAGEMRV 172
>gi|403510518|ref|YP_006642156.1| 16S rRNA processing protein RimM [Nocardiopsis alba ATCC BAA-2165]
gi|402802759|gb|AFR10169.1| 16S rRNA processing protein RimM [Nocardiopsis alba ATCC BAA-2165]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 29/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G+++V TD P+ RF+ +G TI + R H G+
Sbjct: 5 VGRIGRAHGIRGDVAVDVRTDDPDARFSEGAVLHTDPASVGPLTIASI-----RRHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ F+G+ + A L G+TLL D L+D EF+ +L+G+ V + GE VG
Sbjct: 59 -LLVRFKGMADRDAAEALRGTTLLVDSEDIAPLDDPDEFHDHELIGLTAVTTD-GETVGR 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ +D+LH + +V+ + EA G V +PFV +VP VD+
Sbjct: 117 I--------DDVLH----HAQDVLVITAEA--------GHEVLVPFVAALVPEVDVAAGR 156
Query: 259 MQITPPKGLLEL 270
+ + PP GLL+L
Sbjct: 157 LTLDPPPGLLDL 168
>gi|334128349|ref|ZP_08502242.1| 16S rRNA processing protein RimM [Centipeda periodontii DSM 2778]
gi|333387770|gb|EGK58963.1| 16S rRNA processing protein RimM [Centipeda periodontii DSM 2778]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V + HG++G++ + P TDFPE RF LR+ ++G E + I+ + G K
Sbjct: 18 IGRVGAAHGIRGDLRIIPLTDFPE-RFAA-----LREVMVGDELLH----IESMKQQG-K 66
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++ F E A+ L G L + L++GE+Y D+VG+ V E G +GTV
Sbjct: 67 NFLMRFREYTVREAAQRLTGQLLTVTRAEAAPLDEGEYYVFDIVGL-TVYDEEGHELGTV 125
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
NV +G+ND V V+ + GR + IP + +V +D+ G M
Sbjct: 126 ENVLKTGSND---------VYVVRAED----------GREILIPALRAVVLAIDVPGGRM 166
Query: 260 QITPP 264
+ P
Sbjct: 167 TVRLP 171
>gi|420928126|ref|ZP_15391406.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 6G-1108]
gi|392129244|gb|EIU54991.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 6G-1108]
Length = 170
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 2 VGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 56
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 57 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLD-GAA 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V GSE R + +PFV IV + +
Sbjct: 114 VGTVSEVLHTPGGELLSV---------RGSER----------REILVPFVSAIVTSISLA 154
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 155 DKVIEIDPPEGLLDLS 170
>gi|386740657|ref|YP_006213837.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
31]
gi|384477351|gb|AFH91147.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
31]
Length = 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + G++ +E +L GR H G
Sbjct: 2 IGRVVKSHGIKGEVAVEVTTDDPDIRFA------VGEVLNGKQGKKEHRLTISTGRVHQG 55
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + ++G FY +L G+ V+ + GE +G
Sbjct: 56 R--LLIKFEEIPDRTAADSLRGTQFFAEPLKNDDGDEG-FYDHELEGLGVI--QEGEKIG 110
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + A ++L V G+ V IPFV IVP V++
Sbjct: 111 EVTGVMHGPAGEILEVKL-------------------TEGKQVLIPFVHAIVPEVNLEEG 151
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 152 TCTITPPDGLLEL 164
>gi|422419411|ref|ZP_16496366.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL N1-067]
gi|313632802|gb|EFR99758.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL N1-067]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDF + RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + TL E +LE+ E+Y +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTDLEENEYYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G + IP++EE+V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGKDNKEK----------LIPYIEEVVKEINISDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|239917434|ref|YP_002956992.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|281414076|ref|ZP_06245818.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
gi|239838641|gb|ACS30438.1| 16S rRNA processing protein RimM [Micrococcus luteus NCTC 2665]
Length = 200
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 70/209 (33%), Positives = 98/209 (46%), Gaps = 30/209 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL-RQQVLGRETIREVK 128
+ A+ D V V + HG++GE++V+ TD P+ RF PG R + R G +
Sbjct: 2 SPAAQDDLVRVARIGKPHGIRGEVTVQVFTDDPDARFA-PGERLVVRDGAPGLPA----E 56
Query: 129 LIDGREHPGQKSWILTF-EGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
L R ++ ++ F E +D A L G+ L A PE E E+Y DLV + V
Sbjct: 57 LTVTRARWNKQILVVGFAESLDR-NVAETLRGAQLFAVPA-APE-ESDEWYEEDLVDLEV 113
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
+ GE VG V + DLLHV ++G EE + +PFVEE
Sbjct: 114 RID--GERVGVVTALTTGAVQDLLHV-------AVDGVEEEA-----------LVPFVEE 153
Query: 248 IVPIVDMNGREMQITPPKGLLELNLRTDE 276
IVP +D + +TPP GLLEL DE
Sbjct: 154 IVPEIDPKAGVLVLTPPPGLLELATGEDE 182
>gi|419709535|ref|ZP_14237003.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus M93]
gi|420864653|ref|ZP_15328042.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 4S-0303]
gi|420869442|ref|ZP_15332824.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0726-RA]
gi|420873887|ref|ZP_15337263.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0726-RB]
gi|420988795|ref|ZP_15451951.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 4S-0206]
gi|421040777|ref|ZP_15503785.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0116-R]
gi|421044241|ref|ZP_15507241.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0116-S]
gi|382943416|gb|EIC67730.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus M93]
gi|392063369|gb|EIT89218.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 4S-0303]
gi|392065362|gb|EIT91210.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0726-RB]
gi|392068912|gb|EIT94759.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0726-RA]
gi|392183074|gb|EIV08725.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 4S-0206]
gi|392221705|gb|EIV47228.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0116-R]
gi|392233694|gb|EIV59192.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
4S-0116-S]
Length = 173
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 5 VGRIAKAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 60 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLD-GAA 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V GSE R + +PFV IV + +
Sbjct: 117 VGTVSEVLHTPGGELLSV---------RGSER----------REILVPFVSAIVTSISLA 157
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 158 DKVIEIDPPEGLLDLS 173
>gi|85712461|ref|ZP_01043510.1| RimM [Idiomarina baltica OS145]
gi|85693739|gb|EAQ31688.1| RimM [Idiomarina baltica OS145]
Length = 181
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV-KLIDGRE 134
D + VG++ +V+G++G + ++ T+ PE F T W Q R+T EV ++ R
Sbjct: 7 DALVVGHIGAVYGVKGWLKIQSFTENPEDIFDY--TPWTLQGNAARQTTEEVINVVQWRR 64
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H I EGI+ E A G ++ PEL D EFY RDL+G+RVV K+ G
Sbjct: 65 H--NNGLIAQLEGINDRELAATKTGLSICINAEKLPELADDEFYWRDLIGLRVVNKQ-GY 121
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE-EIVPIVD 253
+G V + + AND+L V S+ A S RL IPFV+ + V VD
Sbjct: 122 DMGVVEQIMPTAANDVLVVTA------------NSNDAFGKSERL--IPFVQSQYVLDVD 167
Query: 254 MNGREMQITPP 264
+++Q+ P
Sbjct: 168 NEKQQIQVDWP 178
>gi|358445275|ref|ZP_09155885.1| 16S rRNA-processing protein RimM [Corynebacterium casei UCMA 3821]
gi|356608721|emb|CCE54128.1| 16S rRNA-processing protein RimM [Corynebacterium casei UCMA 3821]
Length = 166
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE+SV +TD PE R+ PG L + G++ +K + R H G+
Sbjct: 5 IGRVIKSHGIKGEVSVDVTTDSPEQRYY-PGAV-LNGKQGGKQVEFTIKTV--RAHKGR- 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+LTF+ + A L G A + E +D FY +L G++VV++ G +G V
Sbjct: 60 -LLLTFDEVKDRTAADSLRGVQFFAEPIE--EEDDEGFYDHELEGLKVVLE--GASIGEV 114
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + LL + +G+ IPFVEEIVP +D+
Sbjct: 115 TGITHGTQQSLLEIKL-------------------DNGKEALIPFVEEIVPEIDLEEGTC 155
Query: 260 QITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 156 TITPPEGLLEL 166
>gi|422650994|ref|ZP_16713793.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964076|gb|EGH64336.1| 16S rRNA-processing protein RimM [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 179
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 22/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T AS D + +G +YSVHG++GE+ V TD P T LR++ ++V+L
Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTD-PIGNLLDYKTWTLRRE---GSVEKQVEL 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K ++ + +D E+AR L G + P+L+DGE+Y L G++V+
Sbjct: 60 VSGRLQ--SKFLVVKLKDLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVI- 116
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G+L+G + ++ +G+ND++ V + + + D RL +P+ E+ V
Sbjct: 117 DQLGQLLGKIDHLLETGSNDVMVV-------------KPCAGSLDDRERL--LPYTEQCV 161
Query: 250 PIVDMNGREMQI 261
++M EM++
Sbjct: 162 LAINMAAGEMKV 173
>gi|210622536|ref|ZP_03293229.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
gi|210154171|gb|EEA85177.1| hypothetical protein CLOHIR_01177 [Clostridium hiranonis DSM 13275]
Length = 172
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 28/190 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + GL+G++ V P+TD RF +L + +G++ ++ D R + G
Sbjct: 10 VGKIVKTQGLKGDVRVYPTTD-DIYRFD-----YLEEFYVGKDRENPWEVEDVR-YKGNL 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
I+ +GID VE+A LVG + + ELE+GEF+ D++GM V +GE VG +
Sbjct: 63 V-IMKIKGIDRVEEAEKLVGKDIYVSRDESFELEEGEFFIADMIGMD-VYTVSGEKVGVL 120
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V AND V VI+ E G+ IP V + VP +D+ +M
Sbjct: 121 KEVLQYSAND---------VYVIKNEE----------GKEYLIPAVMKFVPEIDIEEDKM 161
Query: 260 QITPPKGLLE 269
I P KG+L+
Sbjct: 162 IIDPIKGMLD 171
>gi|86742273|ref|YP_482673.1| 16S rRNA-processing protein RimM [Frankia sp. CcI3]
gi|109893016|sp|Q2J6Z8.1|RIMM_FRASC RecName: Full=Ribosome maturation factor RimM
gi|86569135|gb|ABD12944.1| 16S rRNA processing protein RimM [Frankia sp. CcI3]
Length = 179
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 41/203 (20%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE-HPGQ 138
VG + HG++GE++++ TD P RF VLGRE + G H G+
Sbjct: 7 VGRIGRPHGIRGEVTIEIRTDVPHRRFVVGA-------VLGREGGGTALTVSGAHWHSGR 59
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRP--ELEDGE--------FYTRDLVGMRVV 188
+L F G+D A L G LL + D+ L+D + ++ RDLVG+R V
Sbjct: 60 --LLLHFRGVDDRGAAEALRG-VLLTIDADQAGSPLDDADGDGEAVEMWWDRDLVGLRAV 116
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
G L+G V ++ +S A DLL + D LV PFV +I
Sbjct: 117 TT-AGMLLGHVTDIIHSPAGDLLAI-----------------GGPDGGEHLV--PFVRDI 156
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
VP VD + + PP GLL+L+
Sbjct: 157 VPTVDPPAGRIVVDPPPGLLDLD 179
>gi|289704589|ref|ZP_06501022.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
gi|289558709|gb|EFD51967.1| 16S rRNA processing protein RimM [Micrococcus luteus SK58]
Length = 200
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 96/208 (46%), Gaps = 28/208 (13%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL-RQQVLGRETIREVK 128
+ A+ D V V + HG++GE++V+ TD P+ RF PG R + R G +
Sbjct: 2 SPAAQDDLVRVARIGKPHGIRGEVTVQVFTDDPDARFA-PGERLVVRDGAPGLPA----E 56
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
L R ++ ++ F A L G+ L A PE E E+Y DLV + V
Sbjct: 57 LTVTRARWNKQILVVGFAESPDRNVAETLRGAQLFAVPA-APE-ESDEWYEEDLVDLEVR 114
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
++ GE VG V + DLLHV ++G EE + +PFVEEI
Sbjct: 115 VE--GERVGVVTALTTGAVQDLLHV-------ALDGVEEEA-----------LVPFVEEI 154
Query: 249 VPIVDMNGREMQITPPKGLLELNLRTDE 276
VP +D + +TPP GLLEL DE
Sbjct: 155 VPEIDPEAGVLVLTPPPGLLELATGEDE 182
>gi|379715624|ref|YP_005303961.1| ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
316]
gi|387138920|ref|YP_005694899.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|387140911|ref|YP_005696889.1| ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
1/06-A]
gi|389850674|ref|YP_006352909.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
258]
gi|392400853|ref|YP_006437453.1| ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
Cp162]
gi|349735398|gb|AEQ06876.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|355392702|gb|AER69367.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
1/06-A]
gi|377654330|gb|AFB72679.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
316]
gi|388247980|gb|AFK16971.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
258]
gi|390531931|gb|AFM07660.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
Cp162]
Length = 167
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + G++ +E +L GR H G
Sbjct: 5 IGRVVKSHGIKGEVAVEVTTDDPDIRFA------VGEVLNGKQGKKEHRLTISTGRVHQG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + ++G FY +L G+ V+ + GE +G
Sbjct: 59 R--LLIKFEEIPDRTAADSLRGTQFFAEPLKNDDGDEG-FYDHELEGLGVI--QEGEKIG 113
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + A ++L V G+ V IPFV IVP V++
Sbjct: 114 EVTGVMHGPAGEILEVKL-------------------TEGKQVLIPFVHAIVPEVNLEEG 154
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 155 TCTITPPDGLLEL 167
>gi|375288927|ref|YP_005123468.1| ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
3/99-5]
gi|371576216|gb|AEX39819.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
3/99-5]
Length = 164
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + G++ +E +L GR H G
Sbjct: 2 IGRVVKSHGIKGEVAVEVTTDDPDIRFA------VGEVLNGKQGKKEHRLTISTGRVHQG 55
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + ++G FY +L G+ V+ + GE +G
Sbjct: 56 R--LLIKFEEIPDRTAADSLRGTQFFAAPLKNDDGDEG-FYDHELEGLGVI--QEGEKIG 110
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + A ++L V G+ V IPFV IVP V++
Sbjct: 111 EVTGVMHGPAGEILEVKL-------------------TEGKQVLIPFVHAIVPEVNLEEG 151
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 152 TCTITPPDGLLEL 164
>gi|433448717|ref|ZP_20411583.1| 16S rRNA-processing protein RimM [Weissella ceti NC36]
gi|429539644|gb|ELA07680.1| 16S rRNA-processing protein RimM [Weissella ceti NC36]
Length = 167
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V +TDFPE RF ++ V+ +T V + R+H ++
Sbjct: 6 VGNIVNTHGIRGELKVMATTDFPEERFVKG-----QELVIDGQTPVNVTIQTVRQH--KQ 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++++F+ + + G L+ + +L+D EFY ++VG+ V+ E GE +GTV
Sbjct: 59 FFLISFKDMQNINDVEKYKGRELMIDGEELQDLDDDEFYYHEIVGLTVIDNENGETLGTV 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ AND+ V S D +++P++E +V +D++ +
Sbjct: 119 KEIMELPANDVWVV---------------SRKGHDD----IYLPYIESVVTEIDLDAKTA 159
Query: 260 QIT 262
+T
Sbjct: 160 HVT 162
>gi|309775672|ref|ZP_07670671.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
gi|308916578|gb|EFP62319.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
3_1_53]
Length = 167
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+++G + + HGL+GE+ +K TDFP+LRF T L Q+ E ++ + RE G
Sbjct: 4 INIGMLVNTHGLRGEVKIKVLTDFPQLRFHKGATVHL--QLPTGEL--DLCVAGVRESKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
Q I+ FEG D + Q GS L RE + EL+ E Y +L V + G L+G
Sbjct: 60 Q--LIVKFEGYDDINQVEAWKGSMLTIREDELQELDAYEAYYYELQDAAVYTMD-GTLLG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV + +GAN +L V + + + IPFV V D +
Sbjct: 117 TVTEIIETGANAVLRV--------------------KTADKDILIPFVRAFVKEFDRKAK 156
Query: 258 EMQITPPKGLL 268
M++ +GLL
Sbjct: 157 VMKVELLEGLL 167
>gi|452946824|gb|EME52317.1| 16S rRNA-processing protein RimM [Rhodococcus ruber BKS 20-38]
Length = 185
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF +R+ +T++ + REH G+
Sbjct: 5 VGRVAKSHGIKGEVVVEVRTDEPEERFAVGAVLHVRKP--REQTLQTYTVEAAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVM----KETGE 194
+L G+ A L G+ + D P +D EFY +L G+ V + + G
Sbjct: 62 -LLLRLRGVTDRSAADALRGTLFVVDSADLPPSDDPDEFYDHELEGLSVRIVAGRPDAGT 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV V ++ A +LL V A D L+ IPFV IVP V +
Sbjct: 121 EIGTVREVLHTAAGELLSV----------------RPAGDEQRELL-IPFVTAIVPTVSL 163
Query: 255 NGREMQITPPKGLLE 269
++I PP+GLL+
Sbjct: 164 ADGVIEIDPPEGLLD 178
>gi|299536771|ref|ZP_07050079.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
gi|424737021|ref|ZP_18165477.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZB2]
gi|298727783|gb|EFI68350.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZC1]
gi|422948853|gb|EKU43229.1| 16S rRNA-processing protein [Lysinibacillus fusiformis ZB2]
Length = 171
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 104/197 (52%), Gaps = 29/197 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ V +TDF E RFT ++ + T ++ + R
Sbjct: 1 MEWFNVGRIVNTHGIRGEVRVLSTTDFEEERFTVGNKLAAFKKDDKKPTWVTIESV--RR 58
Query: 135 HPGQKSWI-LTFEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE 191
H K++I LTFEG++ + PL L + + LE+ EF+ +++G V+ +E
Sbjct: 59 H---KNFILLTFEGMNNINLVEPLKEGMLKVTKDQMSDDLLEENEFFFHEIIGCTVISEE 115
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
GE +G V ++ +GAND V V++G+++ +IP++E+IV
Sbjct: 116 -GETIGVVADILQTGAND---------VWVVKGTKKEH-----------YIPYIEDIVKD 154
Query: 252 VDMNGREMQITPPKGLL 268
+D+ +++ I +GLL
Sbjct: 155 IDVMDKKIVIHVMEGLL 171
>gi|19553253|ref|NP_601255.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|62390889|ref|YP_226291.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
13032]
gi|24418639|sp|Q8NNX5.1|RIMM_CORGL RecName: Full=Ribosome maturation factor RimM
gi|21324822|dbj|BAB99445.1| RimM protein, required for 16S rRNA processing [Corynebacterium
glutamicum ATCC 13032]
gi|41326228|emb|CAF20390.1| RIMM PROTEIN (16S RRNA PROCESSING PROTEIN) [Corynebacterium
glutamicum ATCC 13032]
gi|385144155|emb|CCH25194.1| 16S rRNA-processing protein [Corynebacterium glutamicum K051]
Length = 171
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 32/195 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL-IDG-REH 135
+ +G V HG++GE+ V+ STD P++RF + + + G++ +E L ID R H
Sbjct: 7 LQIGKVVKSHGIRGEVVVELSTDDPDIRFA------IGEVLNGKQAGKEHSLTIDAARMH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++ F + A L G+ A + + EDG FY +L G+RV+ + GE
Sbjct: 61 QGR--LLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDG-FYDHELEGLRVIHE--GED 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V + A ++L V SG+ IPFV IVP VD+
Sbjct: 116 IGEVTGVMHGPAGEILEVRL-------------------TSGKETLIPFVHAIVPEVDLE 156
Query: 256 GREMQITPPKGLLEL 270
ITPP+GLL+L
Sbjct: 157 EGTATITPPEGLLDL 171
>gi|148265781|ref|YP_001232487.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
gi|209573558|sp|A5G7Z6.1|RIMM_GEOUR RecName: Full=Ribosome maturation factor RimM
gi|146399281|gb|ABQ27914.1| 16S rRNA processing protein RimM [Geobacter uraniireducens Rf4]
Length = 173
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 72 ASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLID 131
+SG + V +G V + HG++G++ + P + + T R + + G E E+ +
Sbjct: 2 SSGNETVLIGKVSATHGVRGQLRITPFSGDVDSLLTL---RSIMVKKPGGEM--EIFAVA 56
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
+ G+K I+T + D + Q LVG L A PEL + E+Y DL+G++VV +E
Sbjct: 57 ASKAHGKKV-IITLKAFDNINQVLHLVGRELYALREQLPELPEDEYYWCDLLGLQVVTEE 115
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
GE +G +V++ +G+ND V V++G SGR + IP + ++V
Sbjct: 116 -GESLGELVDIIVTGSND---------VYVVQG-----------SGREILIPALADVVLD 154
Query: 252 VDMNGREMQITPPKGLLEL 270
VD + + M ++ P+GLL+L
Sbjct: 155 VDSDAKRMTVSLPEGLLDL 173
>gi|169630308|ref|YP_001703957.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus ATCC
19977]
gi|420910845|ref|ZP_15374157.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0125-R]
gi|420917298|ref|ZP_15380601.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0125-S]
gi|420922463|ref|ZP_15385759.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0728-S]
gi|420967733|ref|ZP_15430937.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0810-R]
gi|420978466|ref|ZP_15441643.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 6G-0212]
gi|420983849|ref|ZP_15447016.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0728-R]
gi|421008616|ref|ZP_15471726.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0119-R]
gi|421013822|ref|ZP_15476900.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0122-R]
gi|421018766|ref|ZP_15481823.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0122-S]
gi|421025045|ref|ZP_15488089.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 3A-0731]
gi|421030475|ref|ZP_15493506.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0930-R]
gi|421035923|ref|ZP_15498941.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0930-S]
gi|238688780|sp|B1MDI4.1|RIMM_MYCA9 RecName: Full=Ribosome maturation factor RimM
gi|169242275|emb|CAM63303.1| Probable 16S rRNA processing protein RimM [Mycobacterium abscessus]
gi|392110189|gb|EIU35959.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0125-S]
gi|392112839|gb|EIU38608.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0125-R]
gi|392127116|gb|EIU52866.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0728-S]
gi|392162744|gb|EIU88433.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 6G-0212]
gi|392168845|gb|EIU94523.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
6G-0728-R]
gi|392196764|gb|EIV22380.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0119-R]
gi|392200677|gb|EIV26282.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0122-R]
gi|392207396|gb|EIV32973.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0122-S]
gi|392211842|gb|EIV37408.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 3A-0731]
gi|392223695|gb|EIV49217.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0930-R]
gi|392224418|gb|EIV49939.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0930-S]
gi|392250240|gb|EIV75714.1| 16S rRNA processing protein RimM [Mycobacterium abscessus
3A-0810-R]
Length = 173
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 5 VGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 60 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLD-GAA 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V GSE R + +PFV IV + +
Sbjct: 117 VGTVSEVLHTPGGELLSV---------RGSER----------REILVPFVSAIVTSISLA 157
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 158 DKVIEIDPPEGLLDLS 173
>gi|225419754|ref|ZP_03762057.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
gi|225041591|gb|EEG51837.1| hypothetical protein CLOSTASPAR_06092 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 73.9 bits (180), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 39/201 (19%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETI----REVKL 129
D + VG + S HG++GE+ V P+TD RF T L+Q VL G+ETI VK
Sbjct: 26 DMLRVGVITSPHGVRGEVKVFPTTD-DAARFKT-----LKQVVLDTGKETISLEIEHVKF 79
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ IL F+G D + LL R ELE+ E++ DL+G+ VV
Sbjct: 80 F-------KNMVILKFKGYDNINDIEKYRSKDLLIRREQAVELEEDEYFIADLIGLAVV- 131
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ GE +GTV +V +GAND V ++E + GR + +P + + +
Sbjct: 132 TDAGEALGTVKDVMETGAND---------VYIVEMKD----------GRELLLPAIGDCI 172
Query: 250 PIVDMNGREMQITPPKGLLEL 270
V+++ M + GL++L
Sbjct: 173 LDVNLDEGRMTVHVLDGLMDL 193
>gi|404444975|ref|ZP_11010123.1| 16S rRNA-processing protein RimM [Mycobacterium vaccae ATCC 25954]
gi|403652879|gb|EJZ07895.1| 16S rRNA-processing protein RimM [Mycobacterium vaccae ATCC 25954]
Length = 173
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG+ GE+SV TD PE RF LR + +I+
Sbjct: 1 MDLV-VGRVVKAHGVTGELSVDVRTDDPEGRFVAGAV--LRGRPSRGGGAERAYVIESVR 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
G + ++ +G+ A L G+ L GD P ++D EFY L GM V + G
Sbjct: 58 PHGDRV-LVRLQGVGDRNAADALRGTLFLVDSGDLPPIDDPDEFYDHQLEGMTVTTTD-G 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V V ++ A +LL V D+ G V +PFV IV V
Sbjct: 116 RSLGAVAEVLHTAAGELLAV-------------------RDSEGAEVLVPFVSAIVVSVS 156
Query: 254 MNGREMQITPPKGLLEL 270
+ ++I PP+GLL+L
Sbjct: 157 LADNAIEIDPPEGLLDL 173
>gi|304404223|ref|ZP_07385885.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
gi|304347201|gb|EFM13033.1| 16S rRNA processing protein RimM [Paenibacillus curdlanolyticus
YK9]
Length = 176
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ + P TDFP++RF PG++ L G+ +V+++ R +
Sbjct: 8 VGKLVNTHGIRGEVKIWPQTDFPDVRF-APGSK-LTLFEEGKNGRLDVEVVSSRSQ--KN 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++L +G D + G L E D +L++ E+Y +++G VV+ + GE +GTV
Sbjct: 64 VYVLKLKGYDNINDVEKYKGWILKVSEQDLIDLDEDEYYYHEIIGC-VVITDAGEELGTV 122
Query: 200 VNVFNSGANDL 210
+ + GAND+
Sbjct: 123 TEILSPGANDV 133
>gi|119025225|ref|YP_909070.1| 16S rRNA-processing protein rimM [Bifidobacterium adolescentis ATCC
15703]
gi|154486607|ref|ZP_02028014.1| hypothetical protein BIFADO_00424 [Bifidobacterium adolescentis
L2-32]
gi|171473022|sp|A0ZZV5.1|RIMM_BIFAA RecName: Full=Ribosome maturation factor RimM
gi|118764809|dbj|BAF38988.1| probable 16S rRNA-processing protein rimM [Bifidobacterium
adolescentis ATCC 15703]
gi|154084470|gb|EDN83515.1| 16S rRNA processing protein RimM [Bifidobacterium adolescentis
L2-32]
Length = 195
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 28/203 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF PG VL + E +++
Sbjct: 9 LELLRVCRIGRAQGLKGEVTVQIFTDEPEYRFA-PGA------VLYTKDGEEEYVVES-S 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE- 191
+ WI+ FEGID + + G L E D PE LE E+Y +DL+ + + E
Sbjct: 61 RTFKNRWIIKFEGIDDRDASEAANGVVLYG-EADDPEEMLEADEWYPKDLISLEARLAEG 119
Query: 192 ------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
G +VG VV+V A LL + + V +G +S+ +PFV
Sbjct: 120 NTLGLAPGTVVGKVVDVIEV-AQWLLKIRLANPVKDADGVVVENSAL---------VPFV 169
Query: 246 EEIVPIVDMNGREMQITPPKGLL 268
+E+VP +D+ G + + PP GL+
Sbjct: 170 DELVPDIDLEGGYLTLDPPGGLI 192
>gi|116490847|ref|YP_810391.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290890293|ref|ZP_06553372.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
gi|419759000|ref|ZP_14285312.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB304]
gi|419856776|ref|ZP_14379496.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB202]
gi|419858764|ref|ZP_14381424.1| 16S rRNA processing protein RimM [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421185252|ref|ZP_15642663.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB318]
gi|421187728|ref|ZP_15645072.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB419]
gi|421189521|ref|ZP_15646835.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB422]
gi|421191022|ref|ZP_15648306.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB548]
gi|421194108|ref|ZP_15651343.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB553]
gi|421195504|ref|ZP_15652712.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB568]
gi|421197615|ref|ZP_15654790.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB576]
gi|122276971|sp|Q04FP6.1|RIMM_OENOB RecName: Full=Ribosome maturation factor RimM
gi|116091572|gb|ABJ56726.1| 16S rRNA processing protein RimM [Oenococcus oeni PSU-1]
gi|290480079|gb|EFD88724.1| hypothetical protein AWRIB429_0762 [Oenococcus oeni AWRIB429]
gi|399904455|gb|EJN91911.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB304]
gi|399964433|gb|EJN99074.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB318]
gi|399966974|gb|EJO01473.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB419]
gi|399969726|gb|EJO04048.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB553]
gi|399972611|gb|EJO06810.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB422]
gi|399973718|gb|EJO07883.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB548]
gi|399975224|gb|EJO09292.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB576]
gi|399975929|gb|EJO09964.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB568]
gi|410497921|gb|EKP89389.1| 16S rRNA processing protein RimM [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499227|gb|EKP90663.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB202]
Length = 166
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V + HG+ GE+ + +TDFPE RF + + KL+ P ++
Sbjct: 6 IGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLIAGE----------KLVVQSSRPFKQ 55
Query: 140 SWILTF---EGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
W++ F E I+ VE+ + G + E P L +GEF ++G++V+ E G +
Sbjct: 56 FWLVKFSDHENINLVEKYK---GEDIFINERKEPRLSEGEFLVSQIIGLKVI-DEKGNSI 111
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + F++GAND+ + ++G+ + IP+++++V VD+
Sbjct: 112 GEIADSFHTGANDVWTI-------------------KKSNGKEILIPYIDQVVKKVDLQT 152
Query: 257 REMQITPPKGLLE 269
+ I +GL E
Sbjct: 153 STVTIELLEGLDE 165
>gi|418245569|ref|ZP_12871974.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
14067]
gi|354510480|gb|EHE83404.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum ATCC
14067]
Length = 171
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 32/195 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL-IDG-REH 135
+ +G V HG++GE+ V+ STD P++RF + + + G++ +E L ID R H
Sbjct: 7 LQIGKVVKSHGIRGEVVVELSTDDPDIRFA------IGEVLNGKQAGKEHSLTIDAARMH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++ F + A L G+ A + + EDG FY +L G+RV+ + GE
Sbjct: 61 QGR--LLVKFAEVPDRTAADSLRGTRFFAAPLEGEDDEDG-FYDHELEGLRVIHE--GED 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V + A ++L V SG+ IPFV IVP VD+
Sbjct: 116 IGEVTGVMHGPAGEILEVRL-------------------TSGKETLIPFVHAIVPEVDLE 156
Query: 256 GREMQITPPKGLLEL 270
ITPP+GLL+L
Sbjct: 157 EGTATITPPEGLLDL 171
>gi|255036342|ref|YP_003086963.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
gi|254949098|gb|ACT93798.1| 16S rRNA processing protein RimM [Dyadobacter fermentans DSM 18053]
Length = 186
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 27/199 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+GY+ HG G + + D+PE + T ++ ++ G V I+ ++ Q
Sbjct: 9 LGYIVRTHGTAGNVVIYLDVDYPE-DYGDLETVYV--EIKGELVPYFVDEINLQK---QS 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ I+TFE IDT+E+A+ LVGS+L D EL + EFY ++ G +VV + G+L G V
Sbjct: 63 NAIVTFEDIDTIEKAQKLVGSSLYMPLEDLAELGEDEFYYHEIKGFKVVDQTKGDL-GIV 121
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V++ DL+ A D G V IP +IV D + + +
Sbjct: 122 REVYSLNGQDLI--------------------AMDFQGSEVLIPTANDIVIKADKDAKSL 161
Query: 260 QITPPKGLLELNLRTDERS 278
+ P+GLLE+ L S
Sbjct: 162 LVNLPEGLLEVYLDNSSDS 180
>gi|325840597|ref|ZP_08167078.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
gi|325490246|gb|EGC92579.1| 16S rRNA processing protein RimM [Turicibacter sp. HGF1]
Length = 168
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++F+ VG + + H LQGE+ V ++DF E RF ++ E I EV + RE
Sbjct: 1 MEFLQVGKIVNTHALQGEVKVVSNSDFKEERFKKGNQLFIE---FNGEYI-EVIVATHRE 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G +L F+ ++++ G LL + +L++ EFY +++G V TGE
Sbjct: 57 HKGAD--LLKFKHLNSINDVEKYKGCDLLVSAENLDDLDENEFYYFEIIGC-TVKATTGE 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + + +GAND+ V +G ++A IP++E++V VD+
Sbjct: 114 EIGEITEILETGANDVWVVK-------RKGQKDA------------LIPYIEDVVKSVDV 154
Query: 255 NGREMQITPPKGLL 268
+E+ I +GLL
Sbjct: 155 EAKEVIIEVLEGLL 168
>gi|300858744|ref|YP_003783727.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|383314504|ref|YP_005375359.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
P54B96]
gi|384504921|ref|YP_005681591.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
1002]
gi|384507017|ref|YP_005683686.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
C231]
gi|384509105|ref|YP_005685773.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
I19]
gi|384511196|ref|YP_005690774.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
PAT10]
gi|385807805|ref|YP_005844202.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
267]
gi|387136845|ref|YP_005692825.1| ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
42/02-A]
gi|300686198|gb|ADK29120.1| ribosome maturation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302206451|gb|ADL10793.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
C231]
gi|302331007|gb|ADL21201.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
1002]
gi|308276693|gb|ADO26592.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
I19]
gi|341825135|gb|AEK92656.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
PAT10]
gi|348607290|gb|AEP70563.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
42/02-A]
gi|380870005|gb|AFF22479.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
P54B96]
gi|383805198|gb|AFH52277.1| Ribosome maturation factor rimM [Corynebacterium pseudotuberculosis
267]
Length = 167
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 32/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
+G V HG++GE++V+ +TD P++RF + + + G++ +E +L GR H G
Sbjct: 5 IGRVVKSHGIKGEVAVEVTTDDPDIRFA------VGEVLNGKQGKKEHRLTISTGRVHQG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ FE I A L G+ A + ++G FY +L G+ V+ + GE +G
Sbjct: 59 R--LLIKFEEIPDRTAADSLRGTQFFAAPLKNDDGDEG-FYDHELEGLGVI--QEGEKIG 113
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + A ++L V G+ V IPFV IVP V++
Sbjct: 114 EVTGVMHGPAGEILEVKL-------------------TEGKQVLIPFVHAIVPEVNLEEG 154
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 155 TCTITPPDGLLEL 167
>gi|300172997|ref|YP_003772163.1| 16S rRNA processing protein RimM [Leuconostoc gasicomitatum LMG
18811]
gi|333446977|ref|ZP_08481919.1| 16S rRNA processing protein RimM [Leuconostoc inhae KCTC 3774]
gi|299887376|emb|CBL91344.1| 16S rRNA processing protein RimM [Leuconostoc gasicomitatum LMG
18811]
Length = 173
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ VG + + HG++GE+ + TDF RF + Q+ ++ VK+ D R H
Sbjct: 6 NYFKVGTIVNTHGIRGEVKIMAITDFAADRFK----KGAELQIDTKQGFVPVKVQDSRMH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ W++ FEG+ + + + G R L D E+Y +++G RV+ E +
Sbjct: 62 --KNMWLVLFEGVTNINEIEKYKTHDIYVIGGAREALGDDEYYYNEIIGCRVIDLEDND- 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + +GAND+ V S + S A IP ++++V VD+
Sbjct: 119 IGVISEIMETGANDVWVV-----------SRDGQSDA--------LIPMIDDVVKNVDVA 159
Query: 256 GREMQITPPKGLLE 269
G+ + I +GLL+
Sbjct: 160 GKLVTIDALEGLLD 173
>gi|294500957|ref|YP_003564657.1| 16S rRNA processing protein RimM [Bacillus megaterium QM B1551]
gi|295706303|ref|YP_003599378.1| 16S rRNA processing protein RimM [Bacillus megaterium DSM 319]
gi|294350894|gb|ADE71223.1| 16S rRNA processing protein RimM [Bacillus megaterium QM B1551]
gi|294803962|gb|ADF41028.1| 16S rRNA processing protein RimM [Bacillus megaterium DSM 319]
Length = 170
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + VG + + HG++GE+ + +TDF + R+ ++ ++ EV + R
Sbjct: 1 MKWFKVGKIVNTHGVKGEVRIVSTTDFADERYEKGNKLYIFKEKQSEPV--EVTVASHRR 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H +LTFEG V + E +LEDGEFY +++G V E G
Sbjct: 59 HKNFD--LLTFEGYQNVNDVEQYKNCEVKIPEEQLTDLEDGEFYFHEIIGC-TVKTEDGV 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV + GAND+ V G+ V IP+++++V +D+
Sbjct: 116 EVGTVKEILTPGANDVWVV--------------------KKGGKEVLIPYIDDVVQSIDI 155
Query: 255 NGREMQITPPKGLLE 269
+ +E+ IT +GLL+
Sbjct: 156 DEKEIVITVMEGLLD 170
>gi|365871154|ref|ZP_09410695.1| 16S rRNA-processing protein RimM [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363994957|gb|EHM16175.1| 16S rRNA-processing protein RimM [Mycobacterium massiliense CCUG
48898 = JCM 15300]
Length = 170
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 2 VGRIAKAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 56
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 57 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTGD-GAA 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V G E R + +PFV IV + +
Sbjct: 114 VGTVAEVLHTPGGELLSV---------RGPER----------REILVPFVSAIVTSISLA 154
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 155 DKVIEIDPPEGLLDLS 170
>gi|289435136|ref|YP_003465008.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171380|emb|CBH27924.1| 16S rRNA processing protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 172
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDF + RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + TL E +LE+ E+Y +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTDLEENEYYFHEIIGCIVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G + IP++EE+V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGKDNKEK----------LIPYIEEVVKEINISDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIKVMEGLLD 172
>gi|421050232|ref|ZP_15513226.1| 16S rRNA processing protein RimM [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|392238835|gb|EIV64328.1| 16S rRNA processing protein RimM [Mycobacterium massiliense CCUG
48898]
Length = 173
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 5 VGRIAKAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 60 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTGD-GAA 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V G E R + +PFV IV + +
Sbjct: 117 VGTVAEVLHTPGGELLSV---------RGPER----------REILVPFVSAIVTSISLA 157
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 158 DKVIEIDPPEGLLDLS 173
>gi|226313201|ref|YP_002773095.1| 16S rRNA processing protein [Brevibacillus brevis NBRC 100599]
gi|226096149|dbj|BAH44591.1| probable 16S rRNA processing protein [Brevibacillus brevis NBRC
100599]
Length = 175
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + HGL+GE+ V P+TDFP+ RF +L L +KL P
Sbjct: 9 FYGVGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLS----EPLKLKIASRRP 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ I++F G + + G L ELE+ EFY LVG VV E GE +
Sbjct: 65 HKNFEIVSFHGFEHINDIEKYKGGELKIPAEALMELEEDEFYIHQLVGCVVVTDE-GEEL 123
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G +V+V GAND V V++G + +P+++E + VD+
Sbjct: 124 GKIVDVMQPGAND---------VWVVKGKRGE-----------ILLPYIDECIKEVDITN 163
Query: 257 REMQITPPKGLL 268
+ + +GLL
Sbjct: 164 KRVVCHLMEGLL 175
>gi|296117624|ref|ZP_06836208.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
gi|295969355|gb|EFG82596.1| 16S rRNA processing protein RimM [Corynebacterium ammoniagenes DSM
20306]
Length = 171
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V HG++GE+SV +TD PE RF PG +Q G + + E + R H G+
Sbjct: 9 IGRVIKSHGIKGEVSVDVTTDSPEERFY-PGAVLNGKQ--GAKDL-EFTISTVRAHKGR- 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+LTFE I QA L G A + + +DG FY +L G+ +V+ G ++G V
Sbjct: 64 -LLLTFEEITDRTQADSLRGVQFFAPPLEDDDDDDG-FYDHELEGLNLVLD--GNVIGEV 119
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + LL ++ G+ IPFVEEIVP +D++
Sbjct: 120 TGISHGPVQSLLEAKLHN-------------------GKEALIPFVEEIVPEIDLDEGTC 160
Query: 260 QITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 161 TITPPEGLLEL 171
>gi|402298800|ref|ZP_10818461.1| 16S rRNA processing protein [Bacillus alcalophilus ATCC 27647]
gi|401726008|gb|EJS99263.1| 16S rRNA processing protein [Bacillus alcalophilus ATCC 27647]
Length = 173
Score = 73.6 bits (179), Expect = 4e-10, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 23/194 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ VG V + HG++GE+ V STDF E RF G + Q +E + VK+ R+H
Sbjct: 3 EWFKVGKVVNTHGVKGEVRVIASTDFAEERFAI-GQELMVQDAQTKEKVI-VKVASHRKH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+LTFEG + G L E EL++ E+Y +++G V+ E GE
Sbjct: 61 KNFD--LLTFEGFPNINLVERFKGELLYVSEQFLEELDEHEYYYHEIIG-STVLTEDGEE 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + +GAND+ V G+ V IP++E++V +D+
Sbjct: 118 LGKIKEIIETGANDVWVVQ------------------RLGGGKDVLIPYIEQVVQKIDVE 159
Query: 256 GREMQITPPKGLLE 269
+++ + +GL++
Sbjct: 160 EKKITVHLMEGLID 173
>gi|317484963|ref|ZP_07943847.1| 16S rRNA processing protein RimM [Bilophila wadsworthia 3_1_6]
gi|316923768|gb|EFV44970.1| 16S rRNA processing protein RimM [Bilophila wadsworthia 3_1_6]
Length = 180
Score = 73.6 bits (179), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 34/199 (17%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL----GRETIREVKLID 131
D V++G + HG++GEI V D EL LR V+ G + R++++
Sbjct: 10 DLVEIGTLARPHGIRGEIRVNYYADSLEL---------LRGDVVYLQAGNKPPRKMEIDT 60
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
R H G ++ F A L G TLL E PEL++ E Y D++G+ VV+
Sbjct: 61 VRMHQGTP--LIRFVEAPDRTAAEFLRGQTLLIPESALPELDEDEVYLHDMLGLSVVLDA 118
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
TG+ +G + +V G +L ++ G+ + +P V E V
Sbjct: 119 TGQKLGVLDHVLFHGEQELWSILT-------------------PGGKEILLPAVPEFVAD 159
Query: 252 VDMNGREMQITPPKGLLEL 270
+D++ ++ITPP+GLLEL
Sbjct: 160 IDLDTEIIRITPPEGLLEL 178
>gi|293374722|ref|ZP_06621030.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
gi|292646636|gb|EFF64638.1| 16S rRNA processing protein RimM [Turicibacter sanguinis PC909]
Length = 168
Score = 73.6 bits (179), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 26/194 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++F+ VG + + H LQGE+ V ++DF E RF ++ E I EV + RE
Sbjct: 1 MEFLQVGKIVNTHALQGEVKVVSNSDFKEERFKKGSQLFIE---FNGEYI-EVIVATHRE 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G +L F+ ++++ G LL + +L++ EFY +++G V TGE
Sbjct: 57 HKGAD--LLKFKHLNSINDVEKYKGCDLLVSAENLDDLDENEFYYFEIIGC-TVKATTGE 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + + +GAND+ V +G ++A IP++E++V VD+
Sbjct: 114 EIGEITEILETGANDVWVVK-------RKGQKDA------------LIPYIEDVVKSVDV 154
Query: 255 NGREMQITPPKGLL 268
+E+ I +GLL
Sbjct: 155 EAKEVIIEVLEGLL 168
>gi|421186798|ref|ZP_15644180.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB418]
gi|399965602|gb|EJO00174.1| 16S rRNA processing protein RimM [Oenococcus oeni AWRIB418]
Length = 166
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + + HG+ GE+ + +TDFPE RF + + KL+ P ++
Sbjct: 6 IGRIINTHGIAGELKIDFNTDFPEQRFAKNSELLIAGE----------KLVVQSSRPFKQ 55
Query: 140 SWILTF---EGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
W++ F E I+ VE+ + G + E P L +GEF ++G++V+ E G +
Sbjct: 56 FWLVKFSDHENINLVEKYK---GEDIFINERKEPRLSEGEFLVSQIIGLKVI-DEKGNSI 111
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + F++GAND+ + ++G+ + IP+++++V VD+
Sbjct: 112 GKIADSFHTGANDVWTI-------------------KKSNGKEILIPYIDQVVKKVDLQT 152
Query: 257 REMQITPPKGLLE 269
+ I +GL E
Sbjct: 153 STVTIELLEGLDE 165
>gi|291299690|ref|YP_003510968.1| 16S rRNA processing protein RimM [Stackebrandtia nassauensis DSM
44728]
gi|290568910|gb|ADD41875.1| 16S rRNA processing protein RimM [Stackebrandtia nassauensis DSM
44728]
Length = 169
Score = 73.6 bits (179), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G++ V+ TD PE RF G T+ V+ Q+
Sbjct: 5 VGRIVRSHGVRGDLIVEVRTDEPEQRFAGGSVLHTDPPRFGPVTVERVRWY-------QE 57
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
+LT EG+ + A + G L D ED EF DLVG+ VV +E+G +GT
Sbjct: 58 RLLLTLEGVADRDAAEAMRGVALTVDSEDVEVPEDPDEFRDLDLVGLSVV-EESGAEIGT 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIE--GSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
VV V ++ A+DLL V++ G+ +A IPF++ +VP VD+ G
Sbjct: 117 VVRVEHAPAHDLL---------VVDRPGANQA------------LIPFIQAMVPTVDVAG 155
Query: 257 REMQITPPKGLLEL 270
+ +T P+GLL+L
Sbjct: 156 GRIVVTLPEGLLDL 169
>gi|238063307|ref|ZP_04608016.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
gi|237885118|gb|EEP73946.1| ribosome maturation factor rimM [Micromonospora sp. ATCC 39149]
Length = 185
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGTRWLRQQVLGR----ETIREVK 128
VG + HG++GE++V+ TD PE RF T PG G E+
Sbjct: 5 VGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATEPGAVPPANPASGPGVPFRVPAELT 64
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRV 187
+ R H G+ ++ F+GI + A L G+ L D ED E F+ LVG+ V
Sbjct: 65 VESARWHQGR--LLVVFDGILERDVAEALRGTLLGVDSADVAPPEDPEEFHDHQLVGLAV 122
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
V GE +G VV + ++ A+DLL V+ E GR IPFV+
Sbjct: 123 VTP-AGEHLGEVVKIDHAPASDLL---------VLRRPE----------GRTALIPFVKA 162
Query: 248 IVPIVDMNGREMQITPPKGLLEL 270
IVP VD+ G + + PP GLL+L
Sbjct: 163 IVPEVDLAGGRIVVDPPSGLLDL 185
>gi|256379918|ref|YP_003103578.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
gi|255924221|gb|ACU39732.1| 16S rRNA processing protein RimM [Actinosynnema mirum DSM 43827]
Length = 172
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 26/193 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG++GE++V TD PE RF + L T R++ + R H G
Sbjct: 3 VVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAK---LRDGTSRDLTVAAARYHSG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ FE + T + A L G+ LL P +D EFY L G+ + + G +
Sbjct: 60 R--LLVRFEEVLTRDVAELLRGTLLLGSTDALPPTDDPDEFYDHQLEGLAAELAD-GTRI 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV + + +LL V V E EA +PFV +IVP VD+ G
Sbjct: 117 GTVKEIVHGPGGELL-------VLVREDGSEA------------LVPFVRQIVPTVDVAG 157
Query: 257 REMQITPPKGLLE 269
+ + PP+GLL+
Sbjct: 158 GRVVVDPPEGLLD 170
>gi|335357216|ref|ZP_08549086.1| 16S rRNA-processing protein RimM [Lactobacillus animalis KCTC 3501]
Length = 171
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW--LRQQVLGRETIREVKLIDG 132
++F VG + + HG+ GE+ V +TDFPE RF PG + +Q T E+ +
Sbjct: 1 MEFYQVGKIVNTHGICGEVKVIATTDFPEERF-KPGNKLYAFKQNA---STGTELTIQKS 56
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H ++ +L FEG D + G L + ELEDG +Y ++G+ VV E
Sbjct: 57 RRH--KQFIMLAFEGYDNINLVEKFKGDDLKVSADQQEELEDGSYYYHQIIGLDVV-DEN 113
Query: 193 GELVGTVVNVFNSGANDL 210
G +G + + + GAND+
Sbjct: 114 GNSLGEIKEILSPGANDV 131
>gi|295109863|emb|CBL23816.1| 16S rRNA processing protein RimM [Ruminococcus obeum A2-162]
Length = 168
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 29/194 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + + HG++GE+ V P+TD E R+L + + +T RE++ +D +
Sbjct: 3 DLLKVGVITTTHGVRGEVKVFPTTDDAE--------RFLELEYVLLDTGRELRRLDIKNV 54
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K+ IL F+GID + G L + EL + E+Y DL G+ VV+ E G
Sbjct: 55 RFFKNLVILKFDGIDNINDIEKYKGKDLWIPREEAQELGEDEYYIADLQGLNVVL-EDGT 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
GT+ +V +GAND V +I+ +E V +P ++E + VD+
Sbjct: 114 EFGTLRDVMETGAND---------VYIIDSNEHGE----------VLLPAIKECILDVDL 154
Query: 255 NGREMQITPPKGLL 268
M + KGLL
Sbjct: 155 EKNTMTVHLMKGLL 168
>gi|427428609|ref|ZP_18918649.1| 16S rRNA processing protein RimM [Caenispirillum salinarum AK4]
gi|425881717|gb|EKV30401.1| 16S rRNA processing protein RimM [Caenispirillum salinarum AK4]
Length = 194
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 84/197 (42%), Gaps = 37/197 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPE------LRFTTPGTRWLRQQVLGRETIREVKLIDGR 133
VG + HG++G++ VK T P T G + L +V G
Sbjct: 3 VGVIVGAHGIRGDVKVKSFTADPSDVAAYGPVMTEDGGKRLALRVKGE------------ 50
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKET 192
G+ + +G+ A L G+ L L RE E ED EFY DLVG+ M +
Sbjct: 51 ---GKGTVTCFVKGVADRNAAEALKGTRLYLPRESLPAEAEDDEFYHADLVGLTAEMADG 107
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
VG VV V++ GA D+L E A S + V +PF ++ PIV
Sbjct: 108 SGPVGEVVAVYDFGAGDVL---------------ELKPVAGGVSPKPVMVPFTRDVCPIV 152
Query: 253 DMNGREMQITPPKGLLE 269
D+ R + + PP GL++
Sbjct: 153 DVKKRRLVVDPPPGLID 169
>gi|419714420|ref|ZP_14241836.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus M94]
gi|382945539|gb|EIC69833.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus M94]
Length = 173
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 5 VGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSLRFTVESV-----REHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 60 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLD-GAA 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V GSE R + +PFV IV + +
Sbjct: 117 VGTVSEVLHTPGGELLSV---------RGSER----------REILVPFVSAIVTSISLA 157
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 158 DKVIEIDPPEGLLDLS 173
>gi|425736825|ref|ZP_18855101.1| 16S rRNA-processing protein RimM [Staphylococcus massiliensis S46]
gi|425483297|gb|EKU50449.1| 16S rRNA-processing protein RimM [Staphylococcus massiliensis S46]
Length = 170
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GE+ VK ++DF + RF PG + V + + + R H G
Sbjct: 3 VEVGTIVNTHGIKGEVKVKSNSDFTDTRF-QPGETLM---VDYKGDMLTFTVKSYRMHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI + + L GS LL R+ + EL + E+Y D++G V E +
Sbjct: 59 FH--MLTFEGITNINEIEYLKGSVLLQERDHEDIELGEHEYYYSDIIGC-TVFDEADTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +F +GAND V VI+G +E IP++EE+V VD+ G
Sbjct: 116 GRVTEIFETGAND---------VWVIKGDKE------------YMIPYIEEVVREVDVEG 154
Query: 257 REMQITPPKGLLE 269
+++ I P +GL +
Sbjct: 155 KKVIIRPMEGLFD 167
>gi|111023496|ref|YP_706468.1| 16S rRNA-processing protein RimM [Rhodococcus jostii RHA1]
gi|122955113|sp|Q0S2C6.1|RIMM_RHOSR RecName: Full=Ribosome maturation factor RimM
gi|110823026|gb|ABG98310.1| 16S rRNA processing protein [Rhodococcus jostii RHA1]
Length = 183
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI V+ TD PE RF LR +T+ + R+H G+
Sbjct: 5 VGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAV--LRGHKPREQTVSTYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G+ V + + G VGT
Sbjct: 62 -LLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLAD-GTEVGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A D SG L+ +PFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRAGDQSGELL-VPFVAAIVTSVSVADGV 162
Query: 259 MQITPPKGLLE 269
I PP+GLL+
Sbjct: 163 ALIDPPEGLLD 173
>gi|392422202|ref|YP_006458806.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri CCUG 29243]
gi|390984390|gb|AFM34383.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri CCUG 29243]
Length = 178
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIRE 126
TSA D V +G + SVHG++G++ V FT P L R+ L R + +++
Sbjct: 4 TSAPVDDLVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLGYRRWTLRRGDEVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + T G+D E AR + + P L+DGE+Y L G++
Sbjct: 56 VELVKGRLQ--GKILVATLSGLDDREVARTYADFEICIPRSELPALDDGEYYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ V + + + D RL +P+ +
Sbjct: 114 VI-NQAGQLLGQIDHLLETGANDVMVV-------------KPCAESLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EMQ+
Sbjct: 158 QCVLKIDLVAGEMQV 172
>gi|421860557|ref|ZP_16292663.1| RimM protein [Paenibacillus popilliae ATCC 14706]
gi|410829743|dbj|GAC43100.1| RimM protein [Paenibacillus popilliae ATCC 14706]
Length = 172
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++G+ + STDFPE RF + GT + Q ET + + R P +
Sbjct: 8 VGKLVNTHGIRGDAKILTSTDFPEERFAS-GTELILQH---PETKESLTVTVERARPQKN 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F+ D + G L + EL + E+Y +++G RVV E EL G +
Sbjct: 64 VYIIKFKNFDNINDVERYKGWILYVTAAQQKELAENEYYYHEIIGCRVVTDEEKEL-GVI 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ GAND+ V A G+ + +P + +++ VD+ G+ +
Sbjct: 123 SEILAPGANDVWVV-------------------QPAKGKPILLPAIPDVILDVDIVGKLV 163
Query: 260 QITPPKGLL 268
++ +GLL
Sbjct: 164 KVHLMEGLL 172
>gi|431794554|ref|YP_007221459.1| 16S rRNA processing protein RimM [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784780|gb|AGA70063.1| 16S rRNA processing protein RimM [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 168
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 34/197 (17%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI-REVKLIDGR 133
+D V +G V HG+QGEI V P T P+ RF L++ +L R + R +K+++ +
Sbjct: 1 MDKVLIGEVIKPHGVQGEIKVHPLTGNPK-RFKK-----LQEVILVRNQLQRRLKVLNAK 54
Query: 134 EHPGQKSWI-LTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
Q+S I LT EG+++ ++A L G + + P LE+G +Y +L GM+V ET
Sbjct: 55 V---QESEIYLTLEGVNSRDEADKLRGWAIKVDRSEVPPLEEGWYYF-ELEGMQVYEGET 110
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
L+GT+ V +GAND V +++G+E R V +P ++ +V V
Sbjct: 111 --LLGTLTRVIETGAND---------VYLVKGNE-----------REVCVPALKTVVKRV 148
Query: 253 DMNGREMQITPPKGLLE 269
D+ GR M++ P GLL+
Sbjct: 149 DVPGRRMEVELPLGLLD 165
>gi|429730841|ref|ZP_19265487.1| 16S rRNA processing protein RimM [Corynebacterium durum F0235]
gi|429147279|gb|EKX90309.1| 16S rRNA processing protein RimM [Corynebacterium durum F0235]
Length = 167
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 28/193 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GE++V STD P++RF + + + GR+ +E L
Sbjct: 3 LKIGRVVKSHGIKGEVTVDISTDEPDIRFA------VGEVLHGRQGSKEHTLTVEAARAH 56
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
Q+ ++ FE I A L G+ A D + +DG FY +L G+ V+ G +G
Sbjct: 57 QRRLLVKFEEITDRNAADSLRGTVFYAPPLDSDDDDDG-FYDHELEGLHVI--HDGADIG 113
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V + A ++L V + G+ V +PFV IVP VD++
Sbjct: 114 EVTGVLHGPAGEILEVRL-------------------SGGKDVLVPFVHAIVPEVDLDAG 154
Query: 258 EMQITPPKGLLEL 270
ITPP GLLEL
Sbjct: 155 TCTITPPDGLLEL 167
>gi|303257145|ref|ZP_07343159.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
gi|302860636|gb|EFL83713.1| 16S rRNA processing protein RimM [Burkholderiales bacterium 1_1_47]
Length = 174
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG 132
SG + + +G ++ +GL+G + V+P F W Q VL +R V+L
Sbjct: 7 SGAEPIVLGALHGAYGLKGWVRVQP---FQGTSALLGSKHW--QHVLPDGEVRPVELEKA 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
+ H + F+GIDT E A L G+ L R+ D PE E+ E+Y DL+G VV KE
Sbjct: 62 KLHGA--GIVAKFQGIDTPEDAAALRGAVALYRK-DFPEAEENEYYWVDLIGCEVVNKE- 117
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+ +G V + ++G +D+L+V A G+ V IPFVE+ + V
Sbjct: 118 GQSIGQVKGMIDNGVHDILNV-------------------KRADGKEVLIPFVEDYLAEV 158
Query: 253 DMNGREMQI 261
++ +++ +
Sbjct: 159 NVEAKKIVV 167
>gi|418052927|ref|ZP_12691004.1| Ribosome maturation factor rimM [Mycobacterium rhodesiae JS60]
gi|353179715|gb|EHB45272.1| Ribosome maturation factor rimM [Mycobacterium rhodesiae JS60]
Length = 176
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GE+ V TD P+ RF PG R + G R+V + R H +
Sbjct: 5 VGRVAKAHGITGELVVDVRTDDPDERFA-PGNRLHLKPSRGGGG-RDVVVESVRPHGAR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ +G+ A L G+ + GD PE++D EFY L G+ V + G +GT
Sbjct: 62 -LLVRLDGVSDRNAADALRGNLFVVDSGDLPEIDDPDEFYDHQLEGLAVRTVD-GRAIGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ +LL V +A G V +PFV IV V +
Sbjct: 120 VAEVLHTAGGELLAV-------------------RNADGAEVLVPFVGAIVTSVSLADGV 160
Query: 259 MQITPPKGLLELN 271
++I PP GLL+L+
Sbjct: 161 VEIDPPDGLLDLD 173
>gi|337286602|ref|YP_004626075.1| 16S rRNA processing protein RimM [Thermodesulfatator indicus DSM
15286]
gi|335359430|gb|AEH45111.1| 16S rRNA processing protein RimM [Thermodesulfatator indicus DSM
15286]
Length = 177
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRF--TTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ +G V HG++GE+ V P +P L F T R+ R+ LGRE +++ R
Sbjct: 7 IPIGKVARAHGIKGEVKVLP---YPLLNFEVITRIPRFYRR--LGREDYEILEVEKFRPA 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ ++ F+GID + A L L D P E+ EFY +L+G++V++ + EL
Sbjct: 62 PGE-GYLFKFKGIDDRDAAEKLHDIELFVNLEDLPPKEENEFYVFELIGLKVILPDGKEL 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G VV + G +LL V + +++P VE+I+ +D+
Sbjct: 121 -GEVVGLMPVGPYELLEVRVEPR-------------------KTIYLPMVEDIISEIDLK 160
Query: 256 GREMQITPPKGLLELNL 272
+ TPP LLE L
Sbjct: 161 KGVIYATPPPDLLESQL 177
>gi|336432672|ref|ZP_08612503.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017954|gb|EGN47707.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
2_1_58FAA]
Length = 172
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 35/198 (17%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG + S HG++GE+ V P+TD P RF + L++ +L ET +E KL E
Sbjct: 4 FLQVGVISSTHGIRGEVKVFPTTDDPN-RF-----KKLKKVIL--ETKKE-KL--SLEVQ 52
Query: 137 GQKSW----ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
G K + I+ F+GID + G +L D LE+ E++ DL+GM V E
Sbjct: 53 GVKFFKQFVIVKFKGIDNINDIEQYKGCSLFVSREDAVALEEDEYFIADLIGMEVYTNEN 112
Query: 193 -GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
EL GT+ +V +GAN++ V S G V IP + + +
Sbjct: 113 PEELFGTLKDVIETGANEVYLV------------------ESKTHGE-VLIPAIRQCILS 153
Query: 252 VDMNGREMQITPPKGLLE 269
VD+ ++MQ+ GLL+
Sbjct: 154 VDVKAQKMQVHLLNGLLD 171
>gi|384045191|ref|YP_005493208.1| L-serine dehydratase, iron-sulfur-dependent subunit alpha [Bacillus
megaterium WSH-002]
gi|345442882|gb|AEN87899.1| L-serine dehydratase, iron-sulfur-dependent, alpha subunit
[Bacillus megaterium WSH-002]
Length = 170
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + VG + + HG++GE+ + +TDF + R+ ++ ++ EV + R+
Sbjct: 1 MKWFKVGKIVNTHGVKGEVRIVSTTDFADERYEKGNKLYIFKEKQSEPV--EVTVASHRK 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H +LTFEG V + E +LEDGEFY +++G V E G
Sbjct: 59 HKNFD--LLTFEGYQNVNDVEQYKNCEVKIPEEQLTDLEDGEFYFHEIIGC-TVKTEDGV 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV + GAND+ V G+ V IP+++++V +D+
Sbjct: 116 EVGTVKEILTPGANDVWVV--------------------KKGGKEVLIPYIDDVVQSIDI 155
Query: 255 NGREMQITPPKGLLE 269
+E+ IT +GLL+
Sbjct: 156 EEKEIVITVMEGLLD 170
>gi|330466289|ref|YP_004404032.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
gi|328809260|gb|AEB43432.1| 16S rRNA-processing protein RimM [Verrucosispora maris AB-18-032]
Length = 187
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 95/205 (46%), Gaps = 36/205 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGTRWLRQQVLGRETIREVKLIDG 132
VG + HG++GE++V+ TD P+ RF T PG Q E ++ D
Sbjct: 5 VGRIGKPHGIRGEVTVEVRTDEPDTRFAPGVVLATMPGVVPRGGQEPAAEPGERYEVPDA 64
Query: 133 ------REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGM 185
R H G+ ++ FEG+ + A L G+ L D ED EF+ LVG+
Sbjct: 65 LTVEAVRWHQGR--LLVAFEGVLDRDVAEALRGTLLTVDSADVAPPEDPEEFHDHQLVGL 122
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
VV +GE +G V + ++ A+DLL V+ E GR IPFV
Sbjct: 123 AVVTP-SGERLGEVARIDHAPASDLL---------VLRRPE----------GRTALIPFV 162
Query: 246 EEIVPIVDMNGREMQITPPKGLLEL 270
+ IVP VD+ G + + PP GLL+L
Sbjct: 163 KAIVPEVDLAGGRVVVDPPGGLLDL 187
>gi|418421342|ref|ZP_12994516.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus subsp.
bolletii BD]
gi|363996422|gb|EHM17637.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus subsp.
bolletii BD]
Length = 173
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGT---RWLRQQVLGRETIREVKLIDGREHP 136
VG + HG+ GE+SV+ TD P+ RF R R R T+ V REH
Sbjct: 5 VGRIAKAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESV-----REHS 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGEL 195
G+ ++ F G+ + A L G+ + D P +ED EFY L G+ V + G
Sbjct: 60 GR--LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTVD-GAA 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTV V ++ +LL V G E R + +PFV IV + +
Sbjct: 117 VGTVAEVLHTPGGELLSV---------RGPER----------REILVPFVSAIVTSISLA 157
Query: 256 GREMQITPPKGLLELN 271
+ ++I PP+GLL+L+
Sbjct: 158 DKVIEIDPPEGLLDLS 173
>gi|407786594|ref|ZP_11133739.1| 16S rRNA-processing protein RimM [Celeribacter baekdonensis B30]
gi|407201315|gb|EKE71316.1| 16S rRNA-processing protein RimM [Celeribacter baekdonensis B30]
Length = 169
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
VG + G+ GE+ +K PE + +P T + R +K
Sbjct: 8 VGAIAGAFGVHGEVRIKSFCADPEAIGDYSPLTSEDGKTTYNLTLTRAIK---------- 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+ EG+ T E+A L G L A P L D E+Y DL+G+ V+ G ++GT
Sbjct: 58 NGFAADLEGVTTKEEADALKGVVLYAERDVLPSLPDDEYYHADLIGL-TVLDTGGAVLGT 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V NV N GA DLL E S A AS V +PF +VP VD+
Sbjct: 117 VSNVLNHGAGDLL---------------EVSGPALKAS---VLMPFTMAVVPTVDLASGR 158
Query: 259 MQITPPKGLLE 269
+ PP+GL E
Sbjct: 159 IIADPPEGLFE 169
>gi|355639818|ref|ZP_09051398.1| 16S rRNA processing protein RimM [Pseudomonas sp. 2_1_26]
gi|354831657|gb|EHF15666.1| 16S rRNA processing protein RimM [Pseudomonas sp. 2_1_26]
Length = 178
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 10 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 62 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 118
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 119 GQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 163
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 164 DLAAGEMRV 172
>gi|282855358|ref|ZP_06264684.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
gi|282586819|gb|EFB92061.1| 16S rRNA processing protein RimM [Pyramidobacter piscolens W5455]
Length = 175
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HGL+GEI ++P TDFPE F + R G+ ++ R+
Sbjct: 7 VVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRD---GKHA-GSYRVTGMRDALT 62
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+ ++ EG++T+EQA L G ++ +R L GEF+ DL+G+ + G +G
Sbjct: 63 RGCFLAALEGVETIEQAELLRGCSVEIAPDERVPLAPGEFWISDLIGLEAC-DDRGSKLG 121
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V ++ +SGA+ L+ V D G+ IP E + D+ R
Sbjct: 122 VVKDIVDSGASQLVVV-------------------RDDGGKDHLIPAAPEFLLGADLEAR 162
Query: 258 EMQITPPKGLLEL 270
+ + +GL EL
Sbjct: 163 RVTLRLIEGLWEL 175
>gi|107103259|ref|ZP_01367177.1| hypothetical protein PaerPA_01004328 [Pseudomonas aeruginosa PACS2]
gi|116051742|ref|YP_789419.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889978|ref|YP_002438842.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa LESB58]
gi|254236653|ref|ZP_04929976.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|254242435|ref|ZP_04935757.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|296387747|ref|ZP_06877222.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAb1]
gi|313109151|ref|ZP_07795122.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
gi|386057268|ref|YP_005973790.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa M18]
gi|386067781|ref|YP_005983085.1| 16S rRNA-processing protein [Pseudomonas aeruginosa NCGM2.S1]
gi|392982531|ref|YP_006481118.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa DK2]
gi|416857083|ref|ZP_11912502.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa 138244]
gi|416874706|ref|ZP_11918313.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa 152504]
gi|419754663|ref|ZP_14281021.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
PADK2_CF510]
gi|420138058|ref|ZP_14646000.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa CIG1]
gi|421158450|ref|ZP_15617706.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
25324]
gi|421166013|ref|ZP_15624287.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
700888]
gi|421173019|ref|ZP_15630774.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa CI27]
gi|424939395|ref|ZP_18355158.1| 16S rRNA processing protein [Pseudomonas aeruginosa NCMG1179]
gi|451985455|ref|ZP_21933672.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa 18A]
gi|122260885|sp|Q02RL7.1|RIMM_PSEAB RecName: Full=Ribosome maturation factor RimM
gi|226734091|sp|B7UYK7.1|RIMM_PSEA8 RecName: Full=Ribosome maturation factor RimM
gi|115586963|gb|ABJ12978.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168584|gb|EAZ54095.1| 16S rRNA processing protein [Pseudomonas aeruginosa C3719]
gi|126195813|gb|EAZ59876.1| 16S rRNA processing protein [Pseudomonas aeruginosa 2192]
gi|218770201|emb|CAW25963.1| 16S rRNA processing protein [Pseudomonas aeruginosa LESB58]
gi|310881624|gb|EFQ40218.1| 16S rRNA processing protein [Pseudomonas aeruginosa 39016]
gi|334841017|gb|EGM19656.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa 138244]
gi|334842951|gb|EGM21549.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa 152504]
gi|346055841|dbj|GAA15724.1| 16S rRNA processing protein [Pseudomonas aeruginosa NCMG1179]
gi|347303574|gb|AEO73688.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa M18]
gi|348036340|dbj|BAK91700.1| 16S rRNA-processing protein [Pseudomonas aeruginosa NCGM2.S1]
gi|384398481|gb|EIE44886.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318036|gb|AFM63416.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa DK2]
gi|403249207|gb|EJY62721.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa CIG1]
gi|404536690|gb|EKA46326.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa CI27]
gi|404539316|gb|EKA48804.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
700888]
gi|404549583|gb|EKA58433.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
25324]
gi|451756851|emb|CCQ86195.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa 18A]
gi|453047248|gb|EME94962.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa
PA21_ST175]
Length = 175
Score = 73.2 bits (178), Expect = 5e-10, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 GQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|298707273|emb|CBJ25900.1| Probable 16S rRNA-processing protein rimM [Ectocarpus siliculosus]
Length = 422
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 57 SLLHSSATQEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQ 116
L+ ++I S +++VG++ HG++GE+ V+ STDF R TPG + ++
Sbjct: 194 GLVEYPDEEDIDPYDPSTFGYIEVGHIQGAHGIKGEVKVRSSTDFAINRLCTPGIKHIKA 253
Query: 117 QVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE 176
R R+++LI GR ++ ++L EG+ T + A L G + E + +LE+ E
Sbjct: 254 P--NRRFPRDIELIGGRWQK-EEIFLLQLEGVKTRDAAAALRGHKVYVLEDEEVDLEENE 310
Query: 177 FYTRDLVGMRVVMKET-----GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSS 231
+ RDLVG R ++ GE+VG V+ ND+ +S +++E +
Sbjct: 311 YMVRDLVGGRAYRQDDESVYIGEVVGVVL------GNDISPTAGLAS-DLLELRLPLENP 363
Query: 232 ASDASGRLVWIPFVEEIVPIVDMNGREMQI--TPPKGLLELNLRTDER 277
+ +IPFV +VP+V + I P+GLL+L + +E+
Sbjct: 364 GDIP--KECYIPFVPALVPVVRVEEGNCTILMDLPEGLLDLAVEVEEK 409
>gi|398814565|ref|ZP_10573246.1| 16S rRNA processing protein RimM [Brevibacillus sp. BC25]
gi|398036834|gb|EJL30043.1| 16S rRNA processing protein RimM [Brevibacillus sp. BC25]
Length = 172
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 25/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + HGL+GE+ V P+TDFP+ RF +L L +KL P
Sbjct: 6 FYGVGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLS----EPLKLKIASRRP 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ I++F G + + G L ELE+ EFY LVG VV E GE +
Sbjct: 62 HKNFEIVSFHGFEHINDIEKYKGGELKIPAEALMELEEDEFYIHQLVGCVVVTDE-GEEL 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G +V+V GAND V V++G+ + +P+++E + VD+
Sbjct: 121 GEIVDVMQPGAND---------VWVVKGNRGE-----------ILLPYIDECIKEVDIAN 160
Query: 257 REMQITPPKGLL 268
+ + +GLL
Sbjct: 161 KRVVCHLMEGLL 172
>gi|345019913|ref|ZP_08783526.1| 16S rRNA-processing protein RimM [Ornithinibacillus scapharcae
TW25]
Length = 172
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++G++ V +DF E RF T +L + + +RE+++ R H G
Sbjct: 9 VGKIINTHGIRGDLKVLRVSDFEE-RFELGNTLYL---ITDDKIVRELEIDGHRIHKGFD 64
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
++ F+G+D + GS L E LE+ EFY +++G V + G+ +G V
Sbjct: 65 --LVHFKGLDNINDVEHFKGSYLKIPESQLQALEENEFYYHEIIGCEVFTND-GKKIGIV 121
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + GAND+ V G+ + IP++EE+V ++++ + +
Sbjct: 122 KEILSPGANDVWVV-------------------KQPKGKDILIPYIEEVVTDINVSEKRI 162
Query: 260 QITPPKGLLE 269
I P +GLL+
Sbjct: 163 VIDPMEGLLD 172
>gi|259585650|sp|C0ZXR9.1|RIMM_RHOE4 RecName: Full=Ribosome maturation factor RimM
gi|226185050|dbj|BAH33154.1| probable 16S rRNA processing protein RimM [Rhodococcus erythropolis
PR4]
Length = 190
Score = 72.8 bits (177), Expect = 6e-10, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR + T++ + R+H G+
Sbjct: 5 VGRVAKSHGIKGELVVEVRTDEPEDRFAVGSV--LRGRKPRESTLKSYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G++VV+ + G VG+
Sbjct: 62 -LLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTD-GTEVGS 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + + SG L+ IPFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRTGETSGELL-IPFVAAIVTSVSIADGV 162
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 163 VMIEPPEGLLD 173
>gi|331000897|ref|ZP_08324534.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
gi|329569856|gb|EGG51613.1| 16S rRNA processing protein RimM [Parasutterella excrementihominis
YIT 11859]
Length = 174
Score = 72.8 bits (177), Expect = 6e-10, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG 132
SG + + +G ++ +GL+G + V+P F W Q VL +R V+L
Sbjct: 7 SGAEPIVLGALHGAYGLKGWVRVQP---FQGTSALLGSKHW--QHVLPDGEVRPVELEKA 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
+ H + F+GIDT E A L G+ L R+ D PE E+ E+Y DL+G VV KE
Sbjct: 62 KLHGA--GIVAKFQGIDTPEDAAALRGAVALYRK-DFPEAEENEYYWVDLIGCDVVNKE- 117
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+ +G V + ++G +D+L+V A G+ V IPFVE+ + V
Sbjct: 118 GQSIGQVKGMIDNGVHDILNV-------------------KRADGKEVLIPFVEDYLAEV 158
Query: 253 DMNGREMQI 261
++ +++ +
Sbjct: 159 NVEAKKIVV 167
>gi|315639579|ref|ZP_07894720.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
gi|315484678|gb|EFU75133.1| 16S rRNA processing protein RimM [Enterococcus italicus DSM 15952]
Length = 174
Score = 72.8 bits (177), Expect = 6e-10, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDF R+ PG + VL RE + L
Sbjct: 3 EYLNVGKIVNTHGIRGEVRVISQTDFALERYQ-PG----KTLVLFRENQAPLTLTIDTYR 57
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +L+FEG ++ Q L + DR EL + EFY +++G VV +E G++
Sbjct: 58 RHKNFDLLSFEGYPSINQVESFRDGILKVAKEDRVELAENEFYYYEIIGAEVVTEE-GKV 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND+ V +G ++A +P+++ ++ VD+
Sbjct: 117 IGKVKEILSPGANDVWVVQ-------RKGKKDA------------LLPYIDSVIKEVDVT 157
Query: 256 GREMQITPPKGLLE 269
+++ + P+GLL+
Sbjct: 158 AQKIIVEIPEGLLD 171
>gi|397736933|ref|ZP_10503609.1| 16S rRNA processing protein RimM [Rhodococcus sp. JVH1]
gi|396927217|gb|EJI94450.1| 16S rRNA processing protein RimM [Rhodococcus sp. JVH1]
Length = 202
Score = 72.8 bits (177), Expect = 6e-10, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI V+ TD PE RF LR +T+ + R+H G+
Sbjct: 24 VGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAV--LRGHKPREQTVSTYTVEAARDHSGR- 80
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G+ V + + G VGT
Sbjct: 81 -LLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLAD-GTEVGT 138
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A D SG L+ +PFV IV V +
Sbjct: 139 VIEVLHSAAGELLSI----------------RRAGDQSGELL-VPFVAAIVTSVSVADGV 181
Query: 259 MQITPPKGLLE 269
I PP+GLL+
Sbjct: 182 ALIDPPEGLLD 192
>gi|307244387|ref|ZP_07526498.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
gi|306492206|gb|EFM64248.1| 16S rRNA processing protein RimM [Peptostreptococcus stomatis DSM
17678]
Length = 172
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTD----FPELRFTTPGTRWLRQQVLGRETIREVK-L 129
L++ +G + + GL+GEI + P TD F +L + G RE K L
Sbjct: 5 LEYFKLGKIVTTRGLKGEIKIYPHTDKIDRFKDLEYFFIGND------------REKKYL 52
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
++ S ++ +G DT+E + L+G + +L++ EF+ D++GM V
Sbjct: 53 VERAVTASNNSIVVKLKGYDTIESVQALIGKFIFVDREMSYQLDEDEFFIADMIGMDVET 112
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
E G+ +G +V+V AND V V++G + + IP EIV
Sbjct: 113 IE-GQKIGKLVDVLQYAAND---------VYVVKGEDS----------KEYLIPATYEIV 152
Query: 250 PIVDMNGREMQITPPKGLLE 269
P +D R M+I P GLL+
Sbjct: 153 PDIDTENRLMKIKPIPGLLD 172
>gi|85860172|ref|YP_462374.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
gi|109893058|sp|Q2LVU6.1|RIMM_SYNAS RecName: Full=Ribosome maturation factor RimM
gi|85723263|gb|ABC78206.1| 16S rRNA processing protein [Syntrophus aciditrophicus SB]
Length = 166
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 47/203 (23%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F ++G + HGL+G + K + E ++ E ++ G+E
Sbjct: 1 MKFFEIGEIVKSHGLKGRMKAKSYVENGE----------------DLSSVHEAMIVKGKE 44
Query: 135 HP-GQK---------SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVG 184
P G K + L E IDTVE A LVGST+L E DR L E+Y RDL+G
Sbjct: 45 EPRGYKVRKIVLHKTYFFLELETIDTVESADSLVGSTVLIPEDDRAALSGDEYYWRDLMG 104
Query: 185 MRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPF 244
++VV +E G +G + ++F +G+ND+ +C GS E + +P
Sbjct: 105 LQVVTEE-GRFLGRIESIFPTGSNDVY--VCAG------GSRE------------ILLPA 143
Query: 245 VEEIVPIVDMNGREMQITPPKGL 267
+ +++ +D++ +EM + GL
Sbjct: 144 ISDVILKIDLDKKEMVVRLLPGL 166
>gi|443632729|ref|ZP_21116908.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347552|gb|ELS61610.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 174
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF E R+ T +L GR EV + R H
Sbjct: 5 WFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMD--GRNEPVEVTVNTHRLH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L F+ ++ + L + + E D EL +GEFY +++G V E GEL+
Sbjct: 62 -KQFHLLQFKERQSLNEVEELKNAIIKVPEEDLGELNEGEFYFHEIIGCE-VFTEDGELI 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + GAND+ V A DA IP++E +V +D++
Sbjct: 120 GNIKEILTPGANDVWVV--------------ARKGKKDA-----LIPYIESVVKHIDVSE 160
Query: 257 REMQITPPKGLLE 269
++++I +GL++
Sbjct: 161 KKIEIELMEGLID 173
>gi|384101486|ref|ZP_10002525.1| 16S rRNA-processing protein RimM [Rhodococcus imtechensis RKJ300]
gi|432336066|ref|ZP_19587600.1| 16S rRNA-processing protein RimM [Rhodococcus wratislaviensis IFP
2016]
gi|383841040|gb|EID80335.1| 16S rRNA-processing protein RimM [Rhodococcus imtechensis RKJ300]
gi|430777021|gb|ELB92410.1| 16S rRNA-processing protein RimM [Rhodococcus wratislaviensis IFP
2016]
Length = 183
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR +T+ + R+H G+
Sbjct: 5 VGRVAKSHGIKGEVVVEVRTDEPEDRFAVGAV--LRGHKPREQTVSTYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G+ V + + G VGT
Sbjct: 62 -LLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLAD-GTEVGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A + SG L+ +PFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRAGEQSGELL-VPFVAAIVTSVSVADGV 162
Query: 259 MQITPPKGLLE 269
++I PP+GLL+
Sbjct: 163 VEIDPPEGLLD 173
>gi|407795758|ref|ZP_11142716.1| 16S rRNA processing protein RimM [Salimicrobium sp. MJ3]
gi|407020099|gb|EKE32813.1| 16S rRNA processing protein RimM [Salimicrobium sp. MJ3]
Length = 172
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 37/200 (18%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE------LRFTTPGTRWLRQQVLGRETIREVKL 129
++++VG + + HG++GE+ +K TDF E + + +PG G + + +
Sbjct: 4 EYLNVGRIINTHGIKGEVKIKRITDFEERFREGNILYWSPG---------GTGEVTRLTV 54
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
R H G +L F+G T+ + PL L+ + D L E+Y +++G V
Sbjct: 55 EAHRIHKGFD--LLKFQGYPTINEVEPLKNGILMIHKEDTTPLGAEEYYFHEIIGCH-VY 111
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
G VG V + GAND V VI+ EE + IP++EE+V
Sbjct: 112 TTAGHYVGEVKEIMTPGAND---------VWVIDRKEEGDA----------LIPYIEEVV 152
Query: 250 PIVDMNGREMQITPPKGLLE 269
VD++ + + I P +GLL+
Sbjct: 153 VQVDVSKKTIIIEPMEGLLD 172
>gi|219669775|ref|YP_002460210.1| 16S rRNA-processing protein RimM [Desulfitobacterium hafniense
DCB-2]
gi|219540035|gb|ACL21774.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense
DCB-2]
Length = 170
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 32/196 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR-ETIREVKLIDGR 133
+D V +G V HG+QGEI V P TD P+ RF R L++ +L + + R +K++
Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPK-RF-----RKLKEVILVQNQEQRRLKVLHAN 54
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H Q LT EGI+T ++A + G + A P L++G +Y +L GM+V E
Sbjct: 55 VH--QSEVYLTLEGINTRDEAEAIRGWAVKADRDQVPPLKEGWYYF-ELEGMQVY--EGD 109
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
L+GT+ V +GAND V +++G + + +P ++ +V VD
Sbjct: 110 VLLGTLAQVIQTGAND---------VYLVKGDQGE-----------ICVPALKTVVKHVD 149
Query: 254 MNGREMQITPPKGLLE 269
+ G+ M + P GL++
Sbjct: 150 VAGKRMDVELPPGLID 165
>gi|389573276|ref|ZP_10163351.1| 16S rRNA-processing protein RimM [Bacillus sp. M 2-6]
gi|388426973|gb|EIL84783.1| 16S rRNA-processing protein RimM [Bacillus sp. M 2-6]
Length = 174
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 98/195 (50%), Gaps = 24/195 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L++++VG + + HG++GE+ V TDFPE R+ ++ +Q ++ +V + R+
Sbjct: 3 LEWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQ--NQKEPLKVTVASHRQ 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ +LTFE + ++ +A L S L + L++GEFY +++G V E +
Sbjct: 61 H--KQFDLLTFEEVGSLNEAEQLKESILKVEKEHLGSLDEGEFYFHEIIGCE-VYDEEDK 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G + V GAND+ V DA IP++ +V VD+
Sbjct: 118 LIGQIKEVLTPGANDVWVV--------------GRKGKKDA-----LIPYIPSVVKTVDI 158
Query: 255 NGREMQITPPKGLLE 269
+ +++ I +GL++
Sbjct: 159 SSKKVHIEVMEGLID 173
>gi|398310697|ref|ZP_10514171.1| 16S rRNA-processing protein RimM [Bacillus mojavensis RO-H-1]
Length = 174
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 28/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF E R+ T +L GR+ EV + R H
Sbjct: 5 WFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMD--GRQEPIEVTVNTYRLH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L F+ ++ + L + + E D EL +GEFY +++G V +E GEL+
Sbjct: 62 -KQFHLLQFKERQSLNEVEELKNAIIKVPEEDLGELNEGEFYFHEIIGCEVFTEE-GELI 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIE--GSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G V + GAND V VIE G ++A IP++E +V +D+
Sbjct: 120 GKVKEILTPGAND---------VWVIERKGKKDA------------LIPYIESVVKQIDV 158
Query: 255 NGREMQITPPKGLLE 269
+ ++++I +GL++
Sbjct: 159 SEKKIEIQLMEGLID 173
>gi|163796730|ref|ZP_02190688.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
gi|159177984|gb|EDP62531.1| 50S ribosomal protein L19 [alpha proteobacterium BAL199]
Length = 179
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 41/197 (20%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTP-----GTRWLRQQVLGRETIREVK 128
+D V +G V HG++G++ VKP T+ P+ + P G R + V GR
Sbjct: 2 VDRVCLGAVAGAHGVRGQVKVKPFTENPDDVAAYGPVEDERGDRRFKLSVTGRH------ 55
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ + I+ +G+ A L G+ L PE E+G FY DL+G+ VV
Sbjct: 56 ---------KDTVIVRIDGVSDRNAAEALRGTRLYVARAVLPEPEEGAFYHADLIGLSVV 106
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
GE +G V +V + GA DL+ + DASG +PF +
Sbjct: 107 -SVGGETLGRVTSVHDFGAGDLVEYV-------------------DASGGQHMLPFTLAM 146
Query: 249 VPIVDMNGREMQITPPK 265
VP VD+ G M + PP+
Sbjct: 147 VPEVDLAGGRMVVDPPE 163
>gi|118591421|ref|ZP_01548819.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
gi|118436093|gb|EAV42736.1| 16S rRNA processing protein RimM [Stappia aggregata IAM 12614]
Length = 184
Score = 72.4 bits (176), Expect = 7e-10, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 85 SVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILT 144
+ HG++GE+ VKP D P L F G + R+ R ++ R QK+ ++T
Sbjct: 16 AAHGIRGEVRVKPYGDDP-LSFADYGI------LTTRDGKRSFEVERARV---QKTVVIT 65
Query: 145 -FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF 203
F+GI QA L G L PE E+ EFY DL G+ V + +TGE +G ++ V
Sbjct: 66 KFKGITDRNQAEELNGIDLFIDRDQLPEPEEDEFYYSDLTGLDV-LDQTGETLGKIIAVQ 124
Query: 204 NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM-NGR 257
+ GA DLL V GR +IPF ++ VP +D+ NGR
Sbjct: 125 DFGAGDLLEV-------------------RPKRGRSFYIPFTKDFVPEIDLENGR 160
>gi|260654908|ref|ZP_05860396.1| 16S rRNA processing protein RimM [Jonquetella anthropi E3_33 E1]
gi|260630410|gb|EEX48604.1| 16S rRNA processing protein RimM [Jonquetella anthropi E3_33 E1]
Length = 172
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V + V HG++G + V P TDFPE T R+ R E + + L + E
Sbjct: 3 DRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDG----EEVGQYPLKNVGEL 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ IL G+ +A L G + + L +G+++ RDLVG++ ETGE+
Sbjct: 59 RSKGQIILELGGLSDAAEAEALRGCFICVPPDEMVPLPEGQYWIRDLVGLQ-AKDETGEV 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V +GA+D+ IEG + G+ +PFV++ + V ++
Sbjct: 118 LGVVRDVLTTGASDIFE---------IEGLD----------GKKHLVPFVDQFIRQVSLD 158
Query: 256 GREMQITPPKGL 267
RE+ I+ +GL
Sbjct: 159 RRELVISMMEGL 170
>gi|452750054|ref|ZP_21949809.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri NF13]
gi|452006056|gb|EMD98333.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri NF13]
Length = 178
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIRE 126
TSA D V +G + SVHG++G++ V FT P L R+ L R + +++
Sbjct: 4 TSAPVDDLVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLDYRRWTLRRGDEVKQ 55
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
V+L+ GR K + T +G+D E AR + + P L+DGE+Y L G++
Sbjct: 56 VELVKGRLQ--GKILVATLKGLDDREVARTYADFEICIPRSELPALDDGEYYWYQLQGLK 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ + G+L+G + ++ +GAND++ + + + + D RL +P+ +
Sbjct: 114 VI-NQAGQLLGQIDHLLETGANDVMVL-------------KPCAESLDDRERL--LPYTD 157
Query: 247 EIVPIVDMNGREMQI 261
+ V +D+ EMQ+
Sbjct: 158 QCVLKIDLVAGEMQV 172
>gi|47216641|emb|CAG04839.1| unnamed protein product [Tetraodon nigroviridis]
Length = 530
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 440 LQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLP 499
LQ L QR ++ S+P ++ M+ E F +D+F D K V F ++ LP
Sbjct: 136 LQELAEQKQR-----SKCSIPWYIMTSGRTMEATENFFSKHDYFGLDKKDVIFFQQGMLP 190
Query: 500 IVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTAN 558
+ + + KI+++S + AP G+GG++ L + ++++++ G+++I + C N
Sbjct: 191 AMDQ------RGKIILESKGKVSMAPDGNGGLYRALGNQGVLEDMERRGIKFIHVYCVDN 244
Query: 559 PRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE 591
+ + +F+GF GAD G ++ E +E
Sbjct: 245 ILVKVADPVFVGFCVQRGADCGAKVVEKTNPTE 277
>gi|400536998|ref|ZP_10800532.1| 16S rRNA-processing protein RimM [Mycobacterium colombiense CECT
3035]
gi|400330011|gb|EJO87510.1| 16S rRNA-processing protein RimM [Mycobacterium colombiense CECT
3035]
Length = 175
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GE+ V+ TD P+ RF + G E RE+ + REH G+
Sbjct: 5 VGRVVKAHGITGEVVVEVRTDDPDARFAPGNALRAKHSRAGWE--RELTVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L G+ + P +++ + +Y L G+RV GE VG
Sbjct: 62 -LLVRLAGVTDRDAADALRGTLFVVDSEALPAIDEADTYYDHQLEGLRV-RTIAGEQVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V A D R V +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELLAV---------------RQDAGDEK-REVLVPFVSAIVTSVSLDDGT 163
Query: 259 MQITPPKGLLEL 270
+ I PP+GLL+L
Sbjct: 164 VDIDPPEGLLDL 175
>gi|160880538|ref|YP_001559506.1| 16S rRNA-processing protein RimM [Clostridium phytofermentans ISDg]
gi|189040130|sp|A9KLM3.1|RIMM_CLOPH RecName: Full=Ribosome maturation factor RimM
gi|160429204|gb|ABX42767.1| 16S rRNA processing protein RimM [Clostridium phytofermentans ISDg]
Length = 169
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 35/198 (17%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTD----FPELRFTTPGTRWLRQQVLGRETIREVKLID 131
D + VG + S HG++GE+ V P+TD F +L+ T T ++++ I VK
Sbjct: 3 DLLRVGVISSTHGIKGEVKVFPTTDDMNRFKKLKMVTLDTGKEQKEL----EIENVKFF- 57
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
++ IL F+GID + G LL + +L +GEF+ DL+G++ +E
Sbjct: 58 ------KQFVILKFKGIDNINDIEKYKGKDLLISRENAVDLAEGEFFIFDLIGLQ-AEEE 110
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G +G + V +GAND+ VI+ + G+ + IP++++ V
Sbjct: 111 DGNSLGELTEVLQTGANDVF---------VIKTKQ----------GKEILIPYIDDCVKK 151
Query: 252 VDMNGREMQITPPKGLLE 269
+D+N +++ + GL+E
Sbjct: 152 IDLNEKKLVVHLIPGLVE 169
>gi|403736835|ref|ZP_10949796.1| ribosome maturation factor RimM [Austwickia chelonae NBRC 105200]
gi|403192930|dbj|GAB76566.1| ribosome maturation factor RimM [Austwickia chelonae NBRC 105200]
Length = 170
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HGL+GE++V+ TD PE RF+ PG ++ V G E+ L R H G
Sbjct: 5 VARIGKAHGLRGEVTVQIHTDDPENRFS-PGAVFV---VEGLPDTEELVLSTARVHNG-- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
W+L FEG A L G L+ E DGE +Y +L+G+ V +GE +G
Sbjct: 59 IWLLGFEGHPDRTAAEALRGGRLVLP----AEESDGEGWYESELIGLSV-FSLSGERLGQ 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V + A D L V GR +PFVE +VPIVD+
Sbjct: 114 VTGLSIGAAQDRLSVRL-------------------DDGRTGSVPFVEALVPIVDLANER 154
Query: 259 MQITPPKGLLELN 271
+ I P GL +L+
Sbjct: 155 VVIDAPDGLFDLD 167
>gi|268609627|ref|ZP_06143354.1| putative 16S rRNA processing protein [Ruminococcus flavefaciens
FD-1]
Length = 167
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++ G + + HG++GE+ + P TD PEL + +G+ R+ ++I R
Sbjct: 4 EYLEAGKIVTTHGIRGEVKIMPYTDSPELLAE------FDRLFIGKN--RD-EVIITRSR 54
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ + I EG+DT E A L L D EL+D ++ +DL+G+ V +T ++
Sbjct: 55 VFKNTVIAKIEGVDTPEAAEKLRNKVLYMHRDDL-ELDDDTYFIQDLIGLEVRDADTDKV 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G + +V +GAND V VI+G + R IP + ++V D++
Sbjct: 114 YGKIADVLETGAND---------VYVIKGED-----------REYLIPAIADVVVSTDID 153
Query: 256 GREMQITPPKGLLE 269
M I P GL +
Sbjct: 154 NNLMTIRPLDGLFD 167
>gi|424852001|ref|ZP_18276398.1| 16S rRNA processing protein RimM [Rhodococcus opacus PD630]
gi|356666666|gb|EHI46737.1| 16S rRNA processing protein RimM [Rhodococcus opacus PD630]
Length = 183
Score = 72.4 bits (176), Expect = 8e-10, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI V+ TD PE RF LR +T+ + R+H G+
Sbjct: 5 VGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAV--LRGHKPREQTVSTYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L +G+ A L G+ + + P + EFY +L G+ V + + G VGT
Sbjct: 62 -LLLRLDGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLAD-GTEVGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A + SG L+ +PFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRAGEQSGELL-VPFVAAIVTSVSVADGV 162
Query: 259 MQITPPKGLLE 269
++I PP+GLL+
Sbjct: 163 VEIDPPEGLLD 173
>gi|386758325|ref|YP_006231541.1| 16S rRNA-processing protein RimM [Bacillus sp. JS]
gi|384931607|gb|AFI28285.1| 16S rRNA-processing protein RimM [Bacillus sp. JS]
Length = 174
Score = 72.0 bits (175), Expect = 8e-10, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 28/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF E R+ T +L GR EV + R H
Sbjct: 5 WFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMD--GRNEPVEVTVNTHRLH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L F+ ++ + L + + E D EL +GEFY +++G V +E GEL+
Sbjct: 62 -KQFHLLQFKERQSLNEVEELKNAIIKVPEEDLGELNEGEFYFHEIIGCEVFTEE-GELI 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIE--GSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G V + GAND V VIE G ++A IP++E +V +D+
Sbjct: 120 GKVKEILTPGAND---------VWVIERKGKKDA------------LIPYIESVVKHIDV 158
Query: 255 NGREMQITPPKGLLE 269
+ ++++I +GL++
Sbjct: 159 SEKKIEIDLMEGLID 173
>gi|389871990|ref|YP_006379409.1| 16S rRNA-processing protein RimM [Advenella kashmirensis WT001]
gi|388537239|gb|AFK62427.1| 16S rRNA-processing protein RimM [Advenella kashmirensis WT001]
Length = 196
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG--- 132
D V++G + S +G++G + ++P +D E +W L R + R L+
Sbjct: 7 DLVELGRIVSAYGVKGMVKIQPYSD--ERSALLDIDQWW----LARVSPRNGALLSAHTP 60
Query: 133 ----REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
R + EG+ +QA + G+++ A P D E+Y DL+G RV
Sbjct: 61 VRAQRVREQGSDLVAALEGVADRDQAEAMKGTSIFASRSLFPSAPDDEYYWVDLIGSRVY 120
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV-W-IPFVE 246
+++ G+L G V+ V ++GA+ +L V + + ++ + DA GR+ W +PFV
Sbjct: 121 LEDDGQLAGIVLEVMDNGAHGVLRVARHQA-----DAQGEPTPLLDAKGRVQEWLVPFVN 175
Query: 247 EIVPIVDMNGREM 259
E VP VD+ R +
Sbjct: 176 EHVPQVDVAARRI 188
>gi|376257423|ref|YP_005145314.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae VA01]
gi|372119940|gb|AEX83674.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae VA01]
Length = 166
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + ++L GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEILNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFQEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|118463723|ref|YP_882934.1| 16S rRNA-processing protein RimM [Mycobacterium avium 104]
gi|166226451|sp|A0QJ46.1|RIMM_MYCA1 RecName: Full=Ribosome maturation factor RimM
gi|118165010|gb|ABK65907.1| 16S rRNA processing protein RimM [Mycobacterium avium 104]
Length = 175
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P RF T + G E R + REH G+
Sbjct: 5 VGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPE--RSCVIESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L G+ + + P++++ + +Y L G++V G+ VG
Sbjct: 62 -LLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQV-RTTGGQRVGA 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL A +D + R V +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELL----------------AVRDDADGAPREVLVPFVSAIVTAVSLDDGL 163
Query: 259 MQITPPKGLLEL 270
++I PP GLL+L
Sbjct: 164 IEIDPPDGLLDL 175
>gi|345886829|ref|ZP_08838053.1| 16S rRNA processing protein RimM [Bilophila sp. 4_1_30]
gi|345037922|gb|EGW42420.1| 16S rRNA processing protein RimM [Bilophila sp. 4_1_30]
Length = 180
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL----GRETIREVKLID 131
D V++G + HG++GEI V D EL LR V+ G + R++++
Sbjct: 10 DLVEIGTLARPHGIRGEIRVNYYADSLEL---------LRGDVVYLQAGNKPPRKMEIDT 60
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
R H G ++ F A L G TLL E PEL++ E Y D++G+ VV+
Sbjct: 61 VRMHQGTP--LIRFVEAPDRTAAEFLRGQTLLIPESALPELDEDEVYLHDMLGLSVVLDA 118
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
TG+ +G + +V G + ++ G+ + +P V E V
Sbjct: 119 TGQKLGVLDHVLFHGEQEFWSILT-------------------PEGKEILLPAVPEFVAD 159
Query: 252 VDMNGREMQITPPKGLLEL 270
+D++ ++ITPP+GLLEL
Sbjct: 160 IDLDTEIIRITPPEGLLEL 178
>gi|288574572|ref|ZP_06392929.1| 16S rRNA processing protein RimM [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570313|gb|EFC91870.1| 16S rRNA processing protein RimM [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 177
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 48/210 (22%)
Query: 74 GLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG- 132
G D V+VG V + HG++GE V P TDFP+ RF E++ E+ L DG
Sbjct: 3 GDDLVEVGKVIAPHGVKGEFKVFPLTDFPD-RF---------------ESMDELNLYDGK 46
Query: 133 ------------REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTR 180
R P + ++T I ++A L G + + R +L +GE++
Sbjct: 47 GRFIKAVPISSVRFRPDKGEVMITSPKICDRDEAESLRGLLIKVSKDQRRDLPEGEYWID 106
Query: 181 DLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
DL+G+ V+ + +GE +GT+ +V +G +D+ V GR +
Sbjct: 107 DLIGLSVIDEGSGETIGTLCDVMVTGGSDVYTV-------------------KRPDGRNM 147
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
IP V E V VD+ +++ +GL +L
Sbjct: 148 MIPAVGEYVSSVDIASGVLKVKNIEGLRDL 177
>gi|422422496|ref|ZP_16499449.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL S4-171]
gi|313637368|gb|EFS02847.1| 16S rRNA processing protein RimM [Listeria seeligeri FSL S4-171]
Length = 172
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDF + RF T L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFADERFQVGNTVXLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + TL E +LE+ E+Y +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKITEKQLTDLEENEYYFHEIIGCTVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G + IP++EE+V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGKDNKEK----------LIPYIEEVVKEINISDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|89895341|ref|YP_518828.1| hypothetical protein DSY2595 [Desulfitobacterium hafniense Y51]
gi|423074818|ref|ZP_17063542.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense DP7]
gi|122482320|sp|Q24UA8.1|RIMM_DESHY RecName: Full=Ribosome maturation factor RimM
gi|89334789|dbj|BAE84384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361854208|gb|EHL06296.1| 16S rRNA processing protein RimM [Desulfitobacterium hafniense DP7]
Length = 170
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 32/196 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR-ETIREVKLIDGR 133
+D V +G V HG+QGEI V P TD P+ RF R L++ +L + + R +K++
Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPK-RF-----RKLKEVILVQNQEQRRLKVLHAN 54
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H Q LT EGI+T ++A + G + A P L++G +Y +L GM+V E
Sbjct: 55 VH--QSEVYLTLEGINTRDKAEAIRGWAVKADRDQVPPLKEGWYYF-ELEGMQVY--EGD 109
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
L+GT+ V +GAND V +++G + + +P ++ +V VD
Sbjct: 110 VLLGTLAQVIQTGAND---------VYLVKGDKGE-----------ICVPALKTVVKHVD 149
Query: 254 MNGREMQITPPKGLLE 269
+ G+ M + P GL++
Sbjct: 150 VAGKRMDVELPPGLID 165
>gi|407695255|ref|YP_006820043.1| ribosome maturation factor rimM [Alcanivorax dieselolei B5]
gi|407252593|gb|AFT69700.1| Ribosome maturation factor rimM [Alcanivorax dieselolei B5]
Length = 167
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V +VHG++G + V TD E F W + GR+ EVKL R P K
Sbjct: 1 MGRVMAVHGIKGWVKVYSHTDPMENIFEY--QPWYLSK--GRDW-EEVKLAGAR--PQGK 53
Query: 140 SWILTFEGIDTVEQA-RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+GI EQA R LVG + E P DGEFY RDL+G+RV++ + G +G
Sbjct: 54 GLVVAFDGIGDREQAARELVGREIAVSESLLPRSGDGEFYWRDLIGLRVLLPD-GRDLGR 112
Query: 199 VVNVFNSGANDLLHVM 214
V + +GAND+L V+
Sbjct: 113 VDRLMETGANDVLVVI 128
>gi|421179093|ref|ZP_15636689.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa E2]
gi|404547336|gb|EKA56334.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa E2]
Length = 175
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPLSELPSLEEGEYYWHQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 GQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|134102488|ref|YP_001108149.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|291004121|ref|ZP_06562094.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
gi|166226476|sp|A4FME9.1|RIMM_SACEN RecName: Full=Ribosome maturation factor RimM
gi|133915111|emb|CAM05224.1| 16S rRNA processing protein [Saccharopolyspora erythraea NRRL 2338]
Length = 180
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++GE+ V+ TD PELRF +R++ G + R H G+
Sbjct: 11 VGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRR--GAHASENFTVAAARPHAGR- 67
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ EG++ E A L G+ L + +D EF+ L G+RVV GE G
Sbjct: 68 -LLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFP-AGEEAGV 125
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V R V +PFV E+VP +D+
Sbjct: 126 VAEVVHTPAGELLAV-------------------RTPDDREVLVPFVSEMVPEIDLEAGR 166
Query: 259 MQITPPKGLLE 269
+ + PP+GL +
Sbjct: 167 IVVDPPEGLFD 177
>gi|424844774|ref|ZP_18269385.1| 16S rRNA processing protein RimM [Jonquetella anthropi DSM 22815]
gi|363986212|gb|EHM13042.1| 16S rRNA processing protein RimM [Jonquetella anthropi DSM 22815]
Length = 172
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V + V HG++G + V P TDFPE T R+ R E + + L E
Sbjct: 3 DRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDG----EEVGQYPLKSVGEL 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ IL G+ +A L G + + L +G+++ RDLVG++ ETGE+
Sbjct: 59 RSKGQIILELGGLSDAAEAEALRGCFICVPPDEMVPLPEGQYWIRDLVGLQ-AKDETGEV 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V +GA+D+ IEG + G+ +PFV++ + V ++
Sbjct: 118 LGVVRDVLTTGASDIFE---------IEGLD----------GKKHLVPFVDQFIRQVSLD 158
Query: 256 GREMQITPPKGL 267
RE+ I+ +GL
Sbjct: 159 RRELVISMMEGL 170
>gi|302558141|ref|ZP_07310483.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
gi|302475759|gb|EFL38852.1| 16S rRNA processing protein RimM [Streptomyces griseoflavus Tu4000]
Length = 191
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTDPASAGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L + L+A +RPE ED E+Y L+ + VV K+ GE VG
Sbjct: 59 -LLLRFEGVRDRNGAEALRNTLLIADVDPDERPEDED-EYYDHQLIDLDVVTKD-GEEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + DL V +GSE V++PFVEEIV +D+ +
Sbjct: 116 RITEISHLPTQDLF------VVERPDGSE-------------VYVPFVEEIVTEIDLEEQ 156
Query: 258 EMQITPPKGLLE 269
I PP GL++
Sbjct: 157 RAVIDPPPGLID 168
>gi|403383364|ref|ZP_10925421.1| 16S rRNA-processing protein RimM [Kurthia sp. JC30]
Length = 171
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ V TDFPE R+ + + T+ +K R+
Sbjct: 1 MNWYNVGKIVNTHGIRGEVRVISQTDFPEDRYEVGSKLGIFAPGEKKPTVVIIK--TARK 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H + +L+FE + GS L E EL+D EFY ++VG V G
Sbjct: 59 H--KNFMLLSFENYPNINDVEKFKGSMLKVNENYLEELDDDEFYYHEIVGCD-VFDTDGN 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + +F +GAND+ ++ ++G E +IP + E++ VD+
Sbjct: 116 EIGKIKEIFETGANDVW------TIKGVDGKEH-------------YIPVIYEVIKEVDV 156
Query: 255 NGREMQITPPKGLL 268
+ + I +GLL
Sbjct: 157 EAKRVTIELMEGLL 170
>gi|433455526|ref|ZP_20413607.1| 16S rRNA-processing protein RimM [Arthrobacter crystallopoietes
BAB-32]
gi|432197528|gb|ELK53903.1| 16S rRNA-processing protein RimM [Arthrobacter crystallopoietes
BAB-32]
Length = 181
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V V + HG++GE++V+ TD PE RF + + LG T+R +
Sbjct: 3 VQVARIGKPHGIRGEVTVQVLTDAPEERFVAGSQFVVEPERLGPLTLRTARW-------N 55
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELV 196
++ +L FE + A L G+ L D E ED + +Y +LVG++ + + E V
Sbjct: 56 KEILLLGFEEVADRNGAEELRGAKLFV---DSEEHEDEDAWYEHELVGLKAFIGD--EEV 110
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV + A D L VIE A+G V +PFVE+IVP VD
Sbjct: 111 GRVVALNTMPAQDQL---------VIEA----------ANGEEVLVPFVEQIVPEVDTEA 151
Query: 257 REMQITPPKGLLEL----NLRTDERSKKER 282
+++TPP GL EL NL T + + ER
Sbjct: 152 GFVRLTPPPGLFELNSPGNLSTPDDGEGER 181
>gi|421616890|ref|ZP_16057891.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri KOS6]
gi|409781120|gb|EKN60724.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri KOS6]
Length = 178
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 23/192 (11%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
TSA D V +G + SVHG++G++ V TD + RW ++ G E +++V+L
Sbjct: 4 TSAPVDDLVVIGKIVSVHGVRGDVKVYSFTD--PIDNLLDYRRWTLRR--GAE-VKQVEL 58
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR K + T +G+D E AR + + P L+DGE+Y L G++ V
Sbjct: 59 VKGRLQ--GKILVATLKGLDDREVARTYADFEICIPRSELPSLDDGEYYWYQLQGLK-VF 115
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
++ +L+G V ++ +GAND+L V + + + D RL +P+ ++ V
Sbjct: 116 NQSAQLLGRVDHLLETGANDVLVV-------------QPCAGSLDDRERL--LPYTDQCV 160
Query: 250 PIVDMNGREMQI 261
+D+ EMQ+
Sbjct: 161 LKIDLEVGEMQV 172
>gi|377556902|ref|ZP_09786579.1| Ribosome maturation factor rimM [Lactobacillus gastricus PS3]
gi|376167153|gb|EHS86013.1| Ribosome maturation factor rimM [Lactobacillus gastricus PS3]
Length = 169
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V +TDF E RF W+ Q G+ I V + R H G
Sbjct: 6 VGKIVNTHGIRGEVKVITTTDFVEERFQVGNQLWIEQA--GQAPI-AVTIKQARPHKG-- 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ ++ F D + + + L E D+ ELE+G++Y R ++G++V + G +GT+
Sbjct: 61 TMLVKFAEFDNINEVEHFRNAQLSVTEADQAELEEGQYYYRQIIGLKVQTID-GRSLGTI 119
Query: 200 VNVFNSGANDL 210
+ GAND+
Sbjct: 120 KEILAPGANDV 130
>gi|365925207|ref|ZP_09447970.1| 16S rRNA processing protein [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420266518|ref|ZP_14768980.1| Ribosome maturation factor rimM [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425214|gb|EJE98214.1| Ribosome maturation factor rimM [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 169
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRETIREVKLI 130
+ F +VG + + HG+ GE+ VK TDFP+ RF +L R+ VL +R+VK
Sbjct: 1 MSFYEVGQIINTHGIHGEVKVKIITDFPDERFKKGKMLYLLLPDRELVLKIMAVRKVK-- 58
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
+ ++LTFE + G L +E + +L D FY +++G++V +
Sbjct: 59 --------QFYLLTFENYQDINLVEKFKGLKLAVKEEQQQKLADNNFYHHEIIGLKVFDE 110
Query: 191 ETGELVGTVVNVFNSGANDLLHV 213
E E +G + V + GAND+ V
Sbjct: 111 ENNE-IGEISEVMSLGANDVWSV 132
>gi|317057389|ref|YP_004105856.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
gi|315449658|gb|ADU23222.1| 16S rRNA processing protein RimM [Ruminococcus albus 7]
Length = 172
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 34/195 (17%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ G + SV GL+GE+ V+P D P+ + + E R K I
Sbjct: 4 LLEAGKIVSVFGLKGEVKVQPWCDTPDFLCEFDTLYYKSGTPVEVERARVQKNI------ 57
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGE 194
++ +G+D+VE+A+ + L DR ++E GE ++ +DL+G++V+ +G+
Sbjct: 58 ----VVMKIKGVDSVEEAQKIRNRVLYL---DREDVELGEDTYFVQDLIGLKVIDLNSGK 110
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G + V +GAND+ H+ SG++ +IP + ++ D+
Sbjct: 111 EYGVLTEVSETGANDVYHI-------------------KSESGKMYYIPAIPSVIAETDV 151
Query: 255 NGREMQITPPKGLLE 269
G M+ITP +GL +
Sbjct: 152 EGGVMKITPLEGLFD 166
>gi|381209999|ref|ZP_09917070.1| 16S rRNA-processing protein RimM [Lentibacillus sp. Grbi]
Length = 170
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 30/196 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL-IDG-R 133
D ++VG + + HG++G++ V+ TDF E RF Q +L +E + + L IDG R
Sbjct: 3 DMLNVGKIVNTHGIKGDVKVQRITDFEE-RFDIG-----NQLILEKENGQTLNLEIDGHR 56
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
+H G +L F+ D + G L +L + EFY +++G V + +G
Sbjct: 57 DHKGFG--LLHFKSYDNINDVEQFKGRLLKIPRDQLADLAENEFYYHEIIGCAVYLT-SG 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E +GT+ + GAND V V E E G+ V +P++ ++V VD
Sbjct: 114 EKLGTIKEILAPGAND---------VWVTEREE----------GKDVLVPYIADVVKEVD 154
Query: 254 MNGREMQITPPKGLLE 269
++ +++ I P +GLL+
Sbjct: 155 VSDKKVVIEPMEGLLD 170
>gi|418069041|ref|ZP_12706321.1| 16S rRNA processing protein RimM [Pediococcus acidilactici MA18/5M]
gi|357537774|gb|EHJ21797.1| 16S rRNA processing protein RimM [Pediococcus acidilactici MA18/5M]
Length = 171
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +V + + GL+GE+ V TDFPE RF L + + V + +
Sbjct: 1 MNYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAK- 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P + W++ G+D++ + G L E EL DGEFY +++G+ V+ E G+
Sbjct: 60 -PFKGMWLIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHEIIGLTVI--EDGQ 116
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V + + G ND V V+E + + +P++ ++V VD+
Sbjct: 117 TLGKVKEILSYGPND---------VWVVERPGKKD----------LLLPYLNDVVLKVDL 157
Query: 255 NGREMQITPPKGL 267
+ +++ P+GL
Sbjct: 158 DKSIVEVAVPEGL 170
>gi|409385083|ref|ZP_11237804.1| 16S rRNA processing protein RimM [Lactococcus raffinolactis 4877]
gi|399207461|emb|CCK18719.1| 16S rRNA processing protein RimM [Lactococcus raffinolactis 4877]
Length = 171
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D+ VG + + GLQGE+ + TDF E R+ + L + + V+ + +
Sbjct: 1 MDYYKVGTIVNTQGLQGEVRIISVTDFSEERYQKNA-----ELALFDKDDKFVRTLKVKT 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKET 192
H QK++ I+ F+G+ ++ +L +R LE D EFY D++G+ V ET
Sbjct: 56 HRKQKNFDIVKFDGLYSINDVEKFRDFSLKVAAENRAALESDDEFYYDDIIGLDVFENET 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+GTVV + GAND+ + +++ +PF+++++ V
Sbjct: 116 K--IGTVVEILQPGANDVWVIKRQGKKDLL-------------------LPFIDDVILSV 154
Query: 253 DMNGREMQITPPKGL 267
D+ G ++ + P+GL
Sbjct: 155 DIAGNQVTVEIPEGL 169
>gi|226365998|ref|YP_002783781.1| 16S rRNA-processing protein RimM [Rhodococcus opacus B4]
gi|254797760|sp|C1B2R9.1|RIMM_RHOOB RecName: Full=Ribosome maturation factor RimM
gi|226244488|dbj|BAH54836.1| putative 16S rRNA processing protein RimM [Rhodococcus opacus B4]
Length = 183
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GEI V+ TD PE RF LR +T+ ++ REH G+
Sbjct: 5 VGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAV--LRGHKPREQTVNTYRVEAAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDR-PELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G+ V + + EL G
Sbjct: 62 -LLLRLEGVPDRTAADALRGTLFVIDSAELVPSDDPDEFYDHELEGLSVRLADGTEL-GA 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + A + SG L+ +PFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRAGEQSGELL-VPFVAAIVTSVSVADGV 162
Query: 259 MQITPPKGLLE 269
+ I PP+GLL+
Sbjct: 163 VVIDPPEGLLD 173
>gi|218132455|ref|ZP_03461259.1| hypothetical protein BACPEC_00314 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992565|gb|EEC58567.1| 16S rRNA processing protein RimM [[Bacteroides] pectinophilus ATCC
43243]
Length = 169
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/133 (39%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKL-IDGREHPG 137
VG + S HG++GE+ V P+TD P+ RF +L + ++ + RE VKL I+G ++
Sbjct: 7 VGVITSTHGIRGEVKVFPTTDDPK-RFD-----YLEEVIV--DMKREPVKLEIEGVKYFK 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
Q IL F+G D + + V LL + ELEDGEF+ DLVG++VV E EL G
Sbjct: 59 QFV-ILKFKGYDNINDIQQFVKKDLLVTRENAVELEDGEFFICDLVGLKVVTDEGVEL-G 116
Query: 198 TVVNVFNSGANDL 210
+ ++ +GAND+
Sbjct: 117 VLKDIMQTGANDV 129
>gi|399047104|ref|ZP_10739236.1| 16S rRNA processing protein RimM [Brevibacillus sp. CF112]
gi|433546089|ref|ZP_20502427.1| 16S rRNA processing protein [Brevibacillus agri BAB-2500]
gi|398054937|gb|EJL47035.1| 16S rRNA processing protein RimM [Brevibacillus sp. CF112]
gi|432182705|gb|ELK40268.1| 16S rRNA processing protein [Brevibacillus agri BAB-2500]
Length = 172
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + HGL+GE+ V +TDFP+ RF +L L ++K+ R H
Sbjct: 6 FYTVGKLVNTHGLKGEVRVTSTTDFPDQRFRKGSELFLFHPSLSEPV--KLKIATRRAH- 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ IL+FEG + G L E ELE+ EFY L+G VV E GE +
Sbjct: 63 -KDFEILSFEGYGHINDIEKYKGGELKIPEDALMELEEDEFYIHQLIGCEVVTDE-GEEL 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G +V+V GAND V V++G + +PF+++ + VD+
Sbjct: 121 GKIVDVMQPGAND---------VWVVKGRRGE-----------ILLPFIDDCIKEVDIAN 160
Query: 257 REMQITPPKGLL 268
+ + +GLL
Sbjct: 161 KRVVCHLMEGLL 172
>gi|339497682|ref|ZP_08658658.1| 16S rRNA-processing protein RimM [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 173
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F VG + + HG++GE+ + TDF E RF + ++ + GR V + R H
Sbjct: 6 NFFKVGTIVNTHGIRGEVKIMAITDFAEERFQKGASLFIDTK-QGRVP---VTVKSSRLH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +W++ F+G+ + + G + RPEL D E+Y +++ VV +G
Sbjct: 62 --KNAWLVLFDGVSNINEIEKYKGDDVYVEGNSRPELGDDEYYYDEIIDSEVV-DLSGNH 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +GAND+ V E S A IP ++++V +++N
Sbjct: 119 IGIVKEIMTTGANDVWIV-----------KREGQSDA--------LIPLIDDVVKEINVN 159
Query: 256 GREMQITPPKGLLE 269
+ + I +GLL+
Sbjct: 160 DKLITIDVLEGLLD 173
>gi|410903329|ref|XP_003965146.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like protein
1-like [Takifugu rubripes]
Length = 526
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 455 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL 514
+R ++P ++ + E F +N++F D + E+ +P V+ K++
Sbjct: 160 SRCTVPWYIMTSEFTLAPTENFFKENNYFGLDPSNIIMFEQRMIPAVTFDG------KMI 213
Query: 515 MKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVK 573
++ + AP G+GG++ L H I++++D+ GVEY+ + C N + + +F+GF
Sbjct: 214 LQDKGKVAMAPDGNGGLYQALMDHKILQDMDKRGVEYLHVYCVDNILVKMADPVFIGFCV 273
Query: 574 SCGADIGFQISEYAKHSE 591
S GAD G ++ E E
Sbjct: 274 SRGADCGAKVVERTNPGE 291
>gi|442321383|ref|YP_007361404.1| 16S rRNA processing protein RimM [Myxococcus stipitatus DSM 14675]
gi|441489025|gb|AGC45720.1| 16S rRNA processing protein RimM [Myxococcus stipitatus DSM 14675]
Length = 184
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+++GYV HGL+GE++V+P E T R +R + G E R++++ R P
Sbjct: 6 LLELGYVSRAHGLRGELAVRPFDPASETLGTVDRVR-VRTRA-GEE--RDLQIESLRPTP 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
K I+ FEGI++ QA VG+T+ D E+GEF+ DL+G+ V E+G +
Sbjct: 62 --KEDIVVFEGIESRTQAEGFVGATVFVYREDLEPPEEGEFFQGDLIGLEAV-DESGVSL 118
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL-VWIPFVEEIVPIVDMN 255
G V ++ + E + A+GR + +PF +E VP VD+
Sbjct: 119 GRVEEIW--------------------ATSEVPNLVIRAAGRQELVVPFADEFVPTVDIA 158
Query: 256 GREMQITPPKGLLELNLRTDERSKKER 282
+ + I PP+ +E+ R D + E+
Sbjct: 159 AQRIVIRPPE-YVEVGRRDDGPEESEQ 184
>gi|312139214|ref|YP_004006550.1| 16S rRNA processing protein rimm [Rhodococcus equi 103S]
gi|325673479|ref|ZP_08153170.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
gi|311888553|emb|CBH47865.1| 16S rRNA processing protein RimM [Rhodococcus equi 103S]
gi|325555500|gb|EGD25171.1| 16S rRNA processing protein RimM [Rhodococcus equi ATCC 33707]
Length = 188
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 26/195 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR + + + REH G+
Sbjct: 5 VGRVAKSHGIRGELVVEVRTDEPEERFAVGAE--LRGRKPRENKLHTYTVEAAREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMK----ETGE 194
+L EG+ A L G+ + D P + EFY +L G+ V M + G
Sbjct: 62 -LLLRLEGVADRTAADNLRGTLFVIDTADLTPSDDPDEFYDHELEGLTVRMAAGRPDAGT 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VGTV+ V +S A +LL + SG L+ +PFV IVP V +
Sbjct: 121 PVGTVLEVLHSAAGELLSI----------------RPEGQTSGELL-VPFVTAIVPTVSV 163
Query: 255 NGREMQITPPKGLLE 269
++I PP+GLL+
Sbjct: 164 ADGLIEIDPPEGLLD 178
>gi|41409073|ref|NP_961909.1| 16S rRNA-processing protein [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417749403|ref|ZP_12397802.1| 16S rRNA processing protein RimM [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778431|ref|ZP_20957190.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp.
paratuberculosis S5]
gi|59798798|sp|Q73VN8.1|RIMM_MYCPA RecName: Full=Ribosome maturation factor RimM
gi|41397432|gb|AAS05292.1| RimM [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459034|gb|EGO37984.1| 16S rRNA processing protein RimM [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721225|gb|ELP45392.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 175
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P RF T + G E R + REH G+
Sbjct: 5 VGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPE--RSCVIESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L G+ + + P++++ + +Y L G++V G VG
Sbjct: 62 -LLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQV-RTTGGRRVGA 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL A +D + R V +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELL----------------AVRDDADGAPREVLVPFVSAIVTAVSLDDGL 163
Query: 259 MQITPPKGLLEL 270
++I PP GLL+L
Sbjct: 164 IEIDPPDGLLDL 175
>gi|406664622|ref|ZP_11072397.1| Ribosome maturation factor rimM [Bacillus isronensis B3W22]
gi|405387470|gb|EKB46894.1| Ribosome maturation factor rimM [Bacillus isronensis B3W22]
Length = 173
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + +TDF E RF ++ + T V + R
Sbjct: 1 MEWFNVGRIVNTHGIRGELRILSTTDFEEERFAVGSKLAAFKKDDKKPTW--VTISSSRR 58
Query: 135 HPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDR---PELEDGEFYTRDLVGMRVVMK 190
H K++IL TFEG++ + P LL D+ ELED E+Y ++ V
Sbjct: 59 H---KNFILVTFEGMENINLVEPF-KEGLLKVSMDQLAEDELEDNEYYHFEIKDCE-VFS 113
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
E GEL+G V ++ +GAND+ V +G+ +IP++E+IV
Sbjct: 114 EEGELIGVVTDILETGANDVWEVKA-------------------QNGKKHYIPYIEDIVK 154
Query: 251 IVDMNGREMQITPPKGLLE 269
+D++ +++ I +GLLE
Sbjct: 155 DIDVDEKKIIIHVMEGLLE 173
>gi|291550680|emb|CBL26942.1| 16S rRNA processing protein RimM [Ruminococcus torques L2-14]
Length = 169
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 38/198 (19%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRET----IREVKLI 130
F+ VG + S HGL+GE+ V P+TD RF T L+ VL GRE I+ V+
Sbjct: 4 FLQVGVISSTHGLRGEVKVFPTTD-DAARFQT-----LKNVVLDTGREKLDLEIQSVRFF 57
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
++ I+ F+GID + G +L + ELE+ E+Y DL+GM V
Sbjct: 58 -------KQFVIVKFKGIDNINDIEKYKGKSLFVTRENAVELEEDEYYIGDLIGMEVYTD 110
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
++ E G + +V +GAN++ + S+ G V +P + E +
Sbjct: 111 DSEERFGVLKDVMETGANEVYII------------------TSENHGE-VLLPAIHECIL 151
Query: 251 IVDMNGREMQITPPKGLL 268
+D+ ++M++ +GLL
Sbjct: 152 DIDVEAKKMKVHLMEGLL 169
>gi|145296016|ref|YP_001138837.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum R]
gi|417970846|ref|ZP_12611775.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum S9114]
gi|166226437|sp|A4QFB9.1|RIMM_CORGB RecName: Full=Ribosome maturation factor RimM
gi|140845936|dbj|BAF54935.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044726|gb|EGV40401.1| 16S rRNA-processing protein RimM [Corynebacterium glutamicum S9114]
Length = 171
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 32/195 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL-IDG-REH 135
+ +G V HG++GE+ V+ STD P++RF + + + G++ +E L ID R H
Sbjct: 7 LQIGKVVKSHGIRGEVVVELSTDDPDIRFA------IGEVLNGKQAGKEHSLTIDAARMH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G+ ++ F + A L G+ A + + EDG FY +L +RV+ + GE
Sbjct: 61 QGR--LLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDG-FYDHELESLRVIHE--GED 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V V + A ++L V SG+ IPFV IVP VD+
Sbjct: 116 IGEVTGVMHGPAGEILEVRL-------------------TSGKETLIPFVHAIVPEVDLE 156
Query: 256 GREMQITPPKGLLEL 270
ITPP+GLL+L
Sbjct: 157 EGTATITPPEGLLDL 171
>gi|397904006|ref|ZP_10504938.1| 16S rRNA processing protein RimM [Caloramator australicus RC3]
gi|343178752|emb|CCC57837.1| 16S rRNA processing protein RimM [Caloramator australicus RC3]
Length = 169
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 34/198 (17%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTD----FPELRFTTPGTRWLRQQVLGRETIREVKLI 130
+ ++ +G + + HG++GE+ + P TD F +L+F + R + + ++ VK
Sbjct: 2 IKYLKIGKIINTHGIKGEVKIYPLTDDIKRFDKLKFVF----FKRGDLYEKVNVQGVKYF 57
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
+ IL EGID + A + + + EL + ++ DL+GM VV
Sbjct: 58 -------KNLVILKLEGIDDMNAAEKIKNDYIYIDRENAVELPEDTYFIADLIGMDVVNI 110
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
ET E VG +++VF++G+ND+ + +G+++ IP ++++V
Sbjct: 111 ETDEKVGRIISVFSTGSNDVYEIKM-------------------DNGKIILIPAIKDVVK 151
Query: 251 IVDMNGREMQITPPKGLL 268
VD+ M+I +GL+
Sbjct: 152 HVDVENSLMKIKLIEGLI 169
>gi|325273827|ref|ZP_08140012.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
gi|324101033|gb|EGB98694.1| 16S rRNA-processing protein RimM [Pseudomonas sp. TJI-51]
Length = 178
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 25/187 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + G+ +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE--GK--VKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y LVG++V+ ++
Sbjct: 63 -GSQKGLVVKLKGLDDRDEARLLSGYEICIARSLLPNLAADEYYWYQLVGLKVINQDE-H 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G V ++ +GAND++ V + + + D RL +P+ E+ V +D+
Sbjct: 121 LFGKVDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTEQCVLAIDL 165
Query: 255 NGREMQI 261
M++
Sbjct: 166 EAGTMRV 172
>gi|258653300|ref|YP_003202456.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
gi|258556525|gb|ACV79467.1| 16S rRNA processing protein RimM [Nakamurella multipartita DSM
44233]
Length = 167
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HGL+G++++ +TD P+ RF VLG + R + R G
Sbjct: 3 VVVGRIGRPHGLRGDVTIAVNTDDPDARFAA-------GSVLGTDPDRGPLTVVTRRRSG 55
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+L FEGI+ + A L G++L PE +D EFY L+G+ V +G+ +
Sbjct: 56 -GVLLLRFEGIEDRDAAEALRGTSLTVPAETLPESDDPDEFYDHQLIGL-AVRDPSGQDL 113
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV V++ A+ +L V +GS+EA +PFV +VP VD+
Sbjct: 114 GKVVEVWHPPASPVL------LVRRPDGSDEA-------------VPFVRALVPTVDLAQ 154
Query: 257 REMQITPPKGLL 268
+ + PP+G+
Sbjct: 155 SYLVVDPPEGMF 166
>gi|339486041|ref|YP_004700569.1| 16S rRNA-processing protein RimM [Pseudomonas putida S16]
gi|431801084|ref|YP_007227987.1| 16S rRNA-processing protein RimM [Pseudomonas putida HB3267]
gi|338836884|gb|AEJ11689.1| 16S rRNA-processing protein RimM [Pseudomonas putida S16]
gi|430791849|gb|AGA72044.1| 16S rRNA-processing protein RimM [Pseudomonas putida HB3267]
Length = 178
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 11/147 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + G+ +++V+L++GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE--GK--VKQVELVNGRG 63
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y LVG++V+ ++ +
Sbjct: 64 --SQKGLVVKLKGLDDRDEARLLSGYEICIPRSLLPNLAADEYYWYQLVGLKVINQDE-Q 120
Query: 195 LVGTVVNVFNSGANDLLHVM-CYSSVN 220
L G V ++ +GAND++ V C S++
Sbjct: 121 LFGKVDHLLETGANDVMVVKPCAGSLD 147
>gi|310821319|ref|YP_003953677.1| ribosome maturation factor rimm [Stigmatella aurantiaca DW4/3-1]
gi|309394391|gb|ADO71850.1| Ribosome maturation factor RimM [Stigmatella aurantiaca DW4/3-1]
Length = 173
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 34/191 (17%)
Query: 77 FVDVGYVYSVHGLQGEISVK----PSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG 132
++ GYV HG++GEI+++ S + + TR ++VL E +R
Sbjct: 6 LLEFGYVARAHGIRGEIAIRTFDAASEALDVVERLSVRTRAGEERVLRIEDVR------- 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
P K I+ EG+DT E A LVG+ + A D ++GEF+ DLVG+ V E
Sbjct: 59 ---PTPKENIVALEGVDTREAAEALVGAAVFAYREDLEPPQEGEFFQGDLVGLTAV-DEA 114
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+ +GTV ++N+G L VI + +A + +PF +E VP V
Sbjct: 115 GQALGTVEEIWNTGEVPNL---------VIRSAGQAE----------LIVPFADEFVPSV 155
Query: 253 DMNGREMQITP 263
D+ ++ I P
Sbjct: 156 DLPQGKIVIRP 166
>gi|299066904|emb|CBJ38099.1| 16S rRNA processing protein [Ralstonia solanacearum CMR15]
Length = 213
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L GT WL+ G + R + +
Sbjct: 43 DLVEVGYVGGAYGVRGWIKVQPHGDAEALLHA--GTWWLKPAA-GAPAVSSDWRVLPIGT 99
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G T+ R D P D EFY DL+G VV E
Sbjct: 100 SREHSG--SVVAGSPAVPDRNVAEALRGCTVWVRRADFPTPADDEFYWVDLIGSTVV-NE 156
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L ++ D SG +PFVE V
Sbjct: 157 QQETLGTVAGLIDNGAHQILRIV-------------------DESGTERLVPFVEVYVKS 197
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 198 VDVAGKRIVV 207
>gi|374853166|dbj|BAL56081.1| 16S rRNA processing protein RimM [uncultured Acidobacteria
bacterium]
Length = 194
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 31/208 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F+ + + G++GE+ + TD PE RF TR + G+ + E ++ H
Sbjct: 6 EFLTIARIVRPRGVKGEVVAEIVTDRPE-RFAAV-TRVRLEASDGQ--VVESRVERYWFH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
GQ IL EG +T+E A L G + +AR+ P LE+ E++ +L+G V E+G+
Sbjct: 62 RGQV--ILKLEGCETIEAASRLRGWWVKIARQEAIP-LEEDEYFLFELIGCEV-WTESGQ 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG V V + LL V EG+EE V IPF I P+VD+
Sbjct: 118 HVGRVREVMETAEVPLLVVEG-------EGAEE------------VLIPFARAICPVVDI 158
Query: 255 NGREMQITPPKGLLELNLRTDERSKKER 282
+ R + ITPP GLL+LN ERS +ER
Sbjct: 159 SARRILITPPDGLLDLN---RERSLRER 183
>gi|452878737|ref|ZP_21955918.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa VRFPA01]
gi|452184616|gb|EME11634.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa VRFPA01]
Length = 175
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ R+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGETRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 GQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|329902140|ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
gi|327548863|gb|EGF33491.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium
IMCC9480]
Length = 187
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRETIREVKLIDGR 133
D V VGYV +GL G + +KP F++ G L R L + + +V ++ +
Sbjct: 18 DLVQVGYVSGAYGLNGWVRIKP--------FSSTGDALLNARTWWLDKPALHDVDVMQAK 69
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G ++ G+ + A L G+++ P L DGEFY DL+G+ V G
Sbjct: 70 MHSGDV--VVQLAGVAGRDAAEALKGTSVQIPRSRFPALPDGEFYWVDLIGL-AVENLQG 126
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E +G V ++ ++GA+ +L V +I G+++A + IPFV + V VD
Sbjct: 127 ESIGVVHDMMDNGAHPILRV----EAAIIPGADKADE---------ILIPFVGQFVRTVD 173
Query: 254 MNGREMQI 261
+++ +
Sbjct: 174 QQAKKITV 181
>gi|226325146|ref|ZP_03800664.1| hypothetical protein COPCOM_02938 [Coprococcus comes ATCC 27758]
gi|225206494|gb|EEG88848.1| 16S rRNA processing protein RimM [Coprococcus comes ATCC 27758]
Length = 170
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 31/195 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKLIDGR 133
D++ VG + S HG++GE+ V P+TD P RF R L+ VL G+E I I+G
Sbjct: 5 DYLQVGVITSTHGIKGEVKVFPTTDDPN-RF-----RALKDVVLDTGKEQIP--LEIEGV 56
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
+ Q IL F+GID + LL + ELE+ E+Y D++GM V E G
Sbjct: 57 KFFKQYV-ILKFKGIDNINDIEKYRKMPLLVSRENAVELEEDEYYMADIIGMD-VYTEDG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E G + ++ +GAND+ V S EA + V +P + + + VD
Sbjct: 115 EKFGVLEDIMETGANDVYVV-----------STEAHTE--------VLLPAIHDCILDVD 155
Query: 254 MNGREMQITPPKGLL 268
R+M + GL+
Sbjct: 156 TENRKMTVHLMDGLI 170
>gi|417317896|ref|ZP_12104498.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J1-220]
gi|328473830|gb|EGF44663.1| 16S rRNA-processing protein RimM [Listeria monocytogenes J1-220]
Length = 140
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDFPE RF T +L + + + + KLI R H
Sbjct: 3 NVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 57
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + L +E +LE+ EFY +++G VV + GE +G
Sbjct: 58 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCIVVTTD-GEELG 116
Query: 198 TVVNVFNSGANDL 210
+ + GAND+
Sbjct: 117 EITEILTPGANDV 129
>gi|378550802|ref|ZP_09826018.1| hypothetical protein CCH26_11974 [Citricoccus sp. CH26A]
Length = 185
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/203 (31%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 69 ETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK 128
E++ S D V V + HG++G+++V+ TD PE RF PG L + +
Sbjct: 3 ESTTSPQDSVRVARIGKPHGIRGDVTVQLYTDDPESRFV-PGAV-LEGRRGSGGRDGNLT 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
++ R + + +L F+ + A L G+ L A D P ED +Y DL+G+ VV
Sbjct: 61 VVRARWN--KDILLLAFDEVTDRNGAEQLRGTELFAAP-DEPG-EDEGWYEEDLIGLSVV 116
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
+ G VG V + DLL V SG +PFVEEI
Sbjct: 117 VD--GARVGAVSGLVTGEVQDLLQVTL-------------------DSGAEALVPFVEEI 155
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
VP VD++ + + PP GLL LN
Sbjct: 156 VPEVDLDAGTVTLDPPPGLLTLN 178
>gi|72161068|ref|YP_288725.1| 16S rRNA-processing protein RimM [Thermobifida fusca YX]
gi|109893064|sp|Q47S65.1|RIMM_THEFY RecName: Full=Ribosome maturation factor RimM
gi|71914800|gb|AAZ54702.1| 16S rRNA processing protein RimM [Thermobifida fusca YX]
Length = 170
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++GE++V+ TD PE RF +G TI + R
Sbjct: 5 VGRIGRPHGVKGEVTVEVRTDSPEERFVVGKALETDPADVGPLTITAQRWHKDR------ 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ FE + A L G L+ + P L+D EF+ +L+G+RV + GE VG
Sbjct: 59 -LLVRFEEVPDRTAAEQLRGVFLVVDSAELPPLDDPDEFHDHELIGLRVETVD-GEAVGE 116
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
VV+V + A D+L V S G V +PFV E+VP VD
Sbjct: 117 VVDVLHH-AQDMLVV-------------------SGEKGSEVLVPFVRELVPDVDTAAGR 156
Query: 259 MQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 157 VVIDPPPGLLEL 168
>gi|399116862|emb|CCG19673.1| ribosome maturation factor RimM [Taylorella asinigenitalis 14/45]
Length = 205
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR---WLRQQVLGRE-TIREVKLID 131
D V VG + +G++G++ + FP + T + W Q+ E I +K I+
Sbjct: 18 DLVIVGRISDANGVRGKVKI-----FPHSKENTQLVKIKNWYLQKFDEDEHPITPIKPIN 72
Query: 132 GREHPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
+ S IL +FEGI +QA L G ++LA + P + EFY DL+G V
Sbjct: 73 VLQKTLIGSHILASFEGITDRDQALLLKGYSILASRSEFPLPDSDEFYWIDLIGCFVYSN 132
Query: 191 ETGE--LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL--VWIPFVE 246
+ E L+G V N+ SGA+ LLH+ SE+ S ++ GR + IPFV+
Sbjct: 133 NSSEPSLIGIVKNLSESGAHTLLHIYQIH-------SEDDLSPRLNSKGRPIEILIPFVK 185
Query: 247 EIVPIVDMNGREM 259
+IVP+VD+ +++
Sbjct: 186 DIVPVVDIKNKKI 198
>gi|256390712|ref|YP_003112276.1| 16S rRNA-processing protein RimM [Catenulispora acidiphila DSM
44928]
gi|256356938|gb|ACU70435.1| 16S rRNA processing protein RimM [Catenulispora acidiphila DSM
44928]
Length = 187
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 36/197 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG++G+ +V+ TD PELRF PG+R L + + + D R H G
Sbjct: 19 VGRIGRAHGIRGQATVEVRTDDPELRFA-PGSRLLTEPAERGPLV----VTDMRFHSG-- 71
Query: 140 SWILTFEGI---DTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGE 194
+L FEG+ + VE R +T+L E D E + EFY LVG+ V + + G
Sbjct: 72 ILLLAFEGVADRNAVEALR----NTILVVEADPDETPEDPEEFYDHQLVGLPVELAD-GT 126
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
++G + ++ + D+L V V+ IPF+++ VP+VD+
Sbjct: 127 VLGEIADLLHLPGQDVLAVKRPDRPEVL-------------------IPFIKQFVPVVDV 167
Query: 255 NGREMQITPPKGLLELN 271
+ + + PP GLL+L+
Sbjct: 168 ANKRIVVDPPAGLLDLD 184
>gi|171741403|ref|ZP_02917210.1| hypothetical protein BIFDEN_00486 [Bifidobacterium dentium ATCC
27678]
gi|283455250|ref|YP_003359814.1| 16S rRNA processing protein RimM [Bifidobacterium dentium Bd1]
gi|171277017|gb|EDT44678.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27678]
gi|283101884|gb|ADB08990.1| rimM 16S rRNA processing protein [Bifidobacterium dentium Bd1]
Length = 195
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
GL+GE++V+ TD PE RF PG + + + R WI+ FE
Sbjct: 21 QGLKGEVTVQIFTDEPEYRFA-PGAVLYTKDGEEEYVVEHSRTFKNR-------WIIKFE 72
Query: 147 GIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMK-------ETGELVG 197
GID + + G T+L E D PE L+ E+Y +DL+G+ + E G +G
Sbjct: 73 GIDNRDSSEAANG-TVLYGEADDPEEMLQADEWYPKDLIGLEARLADDNTLGLEPGMAIG 131
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
VV+V A LL + + V +G +S+ +PFV+E+VP +D+
Sbjct: 132 KVVDVIEV-AQWLLKIRLANPVKDADGVVVENSAL---------VPFVDELVPDIDLEEG 181
Query: 258 EMQITPPKGLL 268
+ + PP GL+
Sbjct: 182 YLTLNPPGGLI 192
>gi|404329160|ref|ZP_10969608.1| 16S rRNA-processing protein RimM [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 175
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 44/200 (22%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTT---------PGTRWLRQQVLGRETIREVKLI 130
VG + + G++GE+ V TDFPE RF + P + +L V G
Sbjct: 7 VGKIVNTRGIKGEVKVISVTDFPEERFASGAVLYAQKEPSSGYLPLTVAGYS-------- 58
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVM 189
R P L FEG T+ + L GS L P LE DG+FY +++G V
Sbjct: 59 --RRAPFD---CLLFEGYPTINEVEKLKGSALFISRDQLPRLEDDGDFYYYEIIGAEVYT 113
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+E EL G + + + GAND+ V D+ G+ + IP++ ++V
Sbjct: 114 EEGREL-GRIKEILSPGANDVWVV--------------------DSGGKDILIPYIIDVV 152
Query: 250 PIVDMNGREMQITPPKGLLE 269
VD+ G+ + + GL++
Sbjct: 153 RHVDVPGKRVTVHLIPGLID 172
>gi|326803874|ref|YP_004321692.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650986|gb|AEA01169.1| 16S rRNA processing protein RimM [Aerococcus urinae
ACS-120-V-Col10a]
Length = 179
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/197 (25%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDGRE 134
+F VG + + GL+GE+ V +TDFPE RF PG++ + + + I V+++ R+
Sbjct: 4 EFYRVGKIVNTQGLKGEVRVIATTDFPEKRF-QPGSQLV---IFDHKNIEAWVEVVSHRQ 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLL--AREGDRPELEDGEFYTRDLVGMRVVMKET 192
H + IL+F+G+ ++ G ++ A+E +L +GEF+ ++G+ VV T
Sbjct: 60 H--KNFHILSFKGMTSINDVEGFKGMEIMVAAKERHSDDLAEGEFFYDQIIGL-VVYDLT 116
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+ +G V + G ND+ + + + V IP+++++V +
Sbjct: 117 GKELGKVKTITQLGPNDVWTI-----------------QRNQPGKKDVLIPYIDDVVKSI 159
Query: 253 DMNGREMQITPPKGLLE 269
D++ +++ I +GL++
Sbjct: 160 DLDDKKIVIDALEGLID 176
>gi|359781974|ref|ZP_09285197.1| 16S rRNA-processing protein RimM [Pseudomonas psychrotolerans L19]
gi|359370344|gb|EHK70912.1| 16S rRNA-processing protein RimM [Pseudomonas psychrotolerans L19]
Length = 178
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Query: 68 VETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TI 124
+ T S D V +G + SV G++GE+ + FT P L R L RE
Sbjct: 1 MSTPTSAPDLVVLGKIVSVFGVRGELKI--------YSFTDPLDNLLDYRTWTLRREGET 52
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVG 184
R+VK++ GR H K + +G+D E+AR + G + + P+L G++Y L G
Sbjct: 53 RQVKVLGGRMH--GKVLTVRLQGLDDREEARLMAGFEICVPRSELPQLGAGDYYWHQLEG 110
Query: 185 MRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPF 244
++V+ +E G+ +G V ++ +GAND++ V + + S D L ++P
Sbjct: 111 LKVINRE-GQWLGVVDHLLETGANDVMVV------------KPCAGSLDDRERLLPYLP- 156
Query: 245 VEEIVPIVDMNGREMQI 261
++ V VD+ EMQ+
Sbjct: 157 -DQYVLAVDLAKGEMQV 172
>gi|392394725|ref|YP_006431327.1| 16S rRNA processing protein RimM [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525803|gb|AFM01534.1| 16S rRNA processing protein RimM [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 170
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 32/196 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE-VKLIDGR 133
+D V +G V HG+QGEI V P TD P+ RF + L++ +L + R +K+++ +
Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPK-RF-----KKLKEVILVQNQERRCLKVLNAK 54
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H Q LT EG++T ++A L G + P L++G +Y +L GM+V E
Sbjct: 55 VH--QSEVYLTLEGVNTRDEADVLRGWAVKTDRDQVPPLKEGWYYF-ELEGMQVYEGEA- 110
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
L+GT+ V +GAND V +++G + + +P ++ +V VD
Sbjct: 111 -LLGTLTQVIQTGAND---------VYLVKGDKGE-----------ICVPALKTVVKHVD 149
Query: 254 MNGREMQITPPKGLLE 269
+ G+ M + P GL++
Sbjct: 150 VAGKRMDVELPSGLID 165
>gi|110635771|ref|YP_675979.1| 16S rRNA-processing protein RimM [Chelativorans sp. BNC1]
gi|122965539|sp|Q11CR1.1|RIMM_MESSB RecName: Full=Ribosome maturation factor RimM
gi|110286755|gb|ABG64814.1| 16S rRNA processing protein RimM [Chelativorans sp. BNC1]
Length = 212
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V + + + HG++GE+ VK T+ P + + +VL IR P
Sbjct: 18 VQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMVDGRVLQVAAIR----------PA 67
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKETGELV 196
++ I+ F+G+D A L G L PE LE+ EFY DL+GM V+ E GE +
Sbjct: 68 KEVVIVRFKGVDGRNAAEALNGEALFVDRSALPEKLEEEEFYYADLIGM-AVLDEKGENL 126
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G VV V N GA DLL + SG V IPF + VP +D++
Sbjct: 127 GRVVAVHNFGAGDLLEF-------------------RENSGPTVIIPFTRDAVPDIDLSN 167
Query: 257 REMQI 261
++I
Sbjct: 168 NTIRI 172
>gi|419964626|ref|ZP_14480580.1| 16S rRNA-processing protein RimM [Rhodococcus opacus M213]
gi|414570021|gb|EKT80760.1| 16S rRNA-processing protein RimM [Rhodococcus opacus M213]
Length = 183
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG++GE+ V+ TD PE RF LR +T+ + R+H G+
Sbjct: 5 VGRVAKSHGIKGEVVVEVRTDEPEDRFAVGAV--LRGHKPREQTVSTYTVEAARDHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+L EG+ A L G+ + + P + EFY +L G+ V + + G VGT
Sbjct: 62 -LLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLAD-GTEVGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V+ V +S A +LL + + SG L+ +PFV IV V +
Sbjct: 120 VIEVLHSAAGELLSI----------------RRVGEQSGELL-VPFVAAIVTSVSVADGV 162
Query: 259 MQITPPKGLLE 269
++I PP+GLL+
Sbjct: 163 VEIDPPEGLLD 173
>gi|306823689|ref|ZP_07457064.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|309802986|ref|ZP_07697087.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
gi|304553396|gb|EFM41308.1| 16S rRNA processing protein RimM [Bifidobacterium dentium ATCC
27679]
gi|308220453|gb|EFO76764.1| 16S rRNA processing protein RimM [Bifidobacterium dentium
JCVIHMP022]
Length = 199
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 28/191 (14%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
GL+GE++V+ TD PE RF PG + + + R WI+ FE
Sbjct: 25 QGLKGEVTVQIFTDEPEYRFA-PGAVLYTKDGEEEYVVEHSRTFKNR-------WIIKFE 76
Query: 147 GIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMK-------ETGELVG 197
GID + + G T+L E D PE L+ E+Y +DL+G+ + E G +G
Sbjct: 77 GIDNRDSSEAANG-TVLYGEADDPEEMLQADEWYPKDLIGLEARLADDNTLGLEPGMAIG 135
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
VV+V A LL + + V +G +S+ +PFV+E+VP +D+
Sbjct: 136 KVVDVIEV-AQWLLKIRLANPVRDADGVVVENSAL---------VPFVDELVPDIDLEEG 185
Query: 258 EMQITPPKGLL 268
+ + PP GL+
Sbjct: 186 YLTLNPPGGLI 196
>gi|329894266|ref|ZP_08270152.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC3088]
gi|328923197|gb|EGG30519.1| 16S rRNA processing protein RimM [gamma proteobacterium IMCC3088]
Length = 173
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG 132
+G D + VG V HG++G + ++ TD PE + +L Q+ G+++ EV+
Sbjct: 2 AGDDLITVGRVLGAHGVKGWVRIRSFTD-PEEQLFEYAPLYLMQR--GKKSAFEVE---- 54
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
K W + +G+D A L G + PEL + EFY RDL+GM VV K
Sbjct: 55 ARKSLTKGWSVKLKGLDDRNAAELLKGVDITMPSAVLPELAEDEFYWRDLIGMTVVTK-- 112
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
G L+G V N+ +GAND+L V +++ + D RL IPF+ E
Sbjct: 113 GVLLGEVSNMLETGANDVLVV-------------KSTEGSVDEQERL--IPFLLE 152
>gi|157692281|ref|YP_001486743.1| 16S rRNA-processing protein RimM [Bacillus pumilus SAFR-032]
gi|166985924|sp|A8FD66.1|RIMM_BACP2 RecName: Full=Ribosome maturation factor RimM
gi|157681039|gb|ABV62183.1| 16S rRNA processing protein [Bacillus pumilus SAFR-032]
Length = 174
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ ++ +Q G+ +V + R+H
Sbjct: 4 EWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQ--GQGEPLKVTVASHRQH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +LTFE I ++ +A L S L + L++GEFY ++G V E +L
Sbjct: 62 --KQFDLLTFEEISSLNEAELLKESILKVEKEHLGSLDEGEFYFHQIIGCE-VYDEENQL 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + + GAND+ V DA IP++ +V +D++
Sbjct: 119 VGQIKEILTPGANDVWVV--------------GRKGKKDA-----LIPYIPSVVKKIDIS 159
Query: 256 GREMQITPPKGLLE 269
+ + I +GL++
Sbjct: 160 SKTIHIEVMEGLID 173
>gi|38234108|ref|NP_939875.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae NCTC
13129]
gi|59798748|sp|Q6NGI4.1|RIMM_CORDI RecName: Full=Ribosome maturation factor RimM
gi|38200370|emb|CAE50057.1| Putative 16s rRNA processing protein [Corynebacterium diphtheriae]
Length = 166
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDVDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|407793738|ref|ZP_11140770.1| 16S rRNA-processing protein RimM [Idiomarina xiamenensis 10-D-4]
gi|407214437|gb|EKE84285.1| 16S rRNA-processing protein RimM [Idiomarina xiamenensis 10-D-4]
Length = 176
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V +G + +V+G++G + V+ TD E F+ + WL +Q ++ REV++ + R H
Sbjct: 8 VVIGRIGAVYGVKGWVKVQTFTDDQEAIFSY--SPWLLRQ---QQQTREVEVAEWRAH-- 60
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K +I +G+ + A L G ++ PEL D EFY DL+G+RV+ + G +G
Sbjct: 61 NKGFIARIDGVSDRDMAAQLTGMDVVVDASRLPELSDDEFYWHDLIGLRVI-NQQGYDMG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV-WIPFVE-EIVPIVDMN 255
V + + +ND+L V ++ +DA GR IPF++ + V VD+
Sbjct: 120 VVEQMMPTASNDVLVV---------------KANDNDAFGRQQRLIPFIQSQYVTAVDLT 164
Query: 256 GREMQITPP 264
+ M + P
Sbjct: 165 EKRMTVDWP 173
>gi|376248810|ref|YP_005140754.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC04]
gi|372115378|gb|AEX81436.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC04]
Length = 166
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|441509933|ref|ZP_20991845.1| ribosome maturation factor RimM [Gordonia aichiensis NBRC 108223]
gi|441445948|dbj|GAC49806.1| ribosome maturation factor RimM [Gordonia aichiensis NBRC 108223]
Length = 173
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD P+ RF R G E + + R+
Sbjct: 1 MDLV-VGRVAKSHGIRGEVVVDVRTDVPDERFAVGTVLRGRPGRGGDE--KNYTVTAARQ 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ +L+ + A L G+ L D D EFY +L G+ V + G
Sbjct: 58 HAGR--LLLSLAEVSDRTAADALRGTLFLIDSADVDSGNDPDEFYDHELEGVAVTTVD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ VG V V + AND+L V + + GR V +PFV EIVP V
Sbjct: 115 DEVGVVAAVLHLPANDVLAV-------------------TTSDGREVLVPFVREIVPTVG 155
Query: 254 MNGREMQITPPKGLLEL 270
++G + I PP GLL++
Sbjct: 156 VDG--IVIDPPDGLLDV 170
>gi|444432128|ref|ZP_21227287.1| ribosome maturation factor RimM [Gordonia soli NBRC 108243]
gi|443886957|dbj|GAC69008.1| ribosome maturation factor RimM [Gordonia soli NBRC 108243]
Length = 172
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 68/198 (34%), Positives = 93/198 (46%), Gaps = 30/198 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD PE RF PG+ LR ++ + + + RE
Sbjct: 1 MDLV-VGRVVKSHGIRGEVVVDVRTDDPEARF-APGSS-LRGRLPKGAGEQTLTVTAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ +L+ E + A L G+ L D D EFY +L G+ V G
Sbjct: 58 HSGR--LLLSLEEVADRSAADALRGTLFLIDSADVDSGTDPDEFYDHELEGVP-VSTVGG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E VGTV +V + ++L V GR V IPFV EIVP V
Sbjct: 115 ESVGTVESVLHLPGGEILAV-------------------RTPDGREVLIPFVREIVPTV- 154
Query: 254 MNGREM-QITPPKGLLEL 270
GRE+ +I PP GLL++
Sbjct: 155 --GRELIEIDPPDGLLDV 170
>gi|15673547|ref|NP_267721.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp. lactis
Il1403]
gi|385831025|ref|YP_005868838.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
CV56]
gi|418037926|ref|ZP_12676284.1| hypothetical protein LLCRE1631_01091 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|13878679|sp|Q9CFB6.1|RIMM_LACLA RecName: Full=Ribosome maturation factor RimM
gi|12724568|gb|AAK05663.1|AE006387_6 16S rRNA processing protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407033|gb|ADZ64104.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
CV56]
gi|354693941|gb|EHE93653.1| hypothetical protein LLCRE1631_01091 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 171
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 25/191 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + GLQGE+ V PSTDF + RF+ L I+++K+ GR P
Sbjct: 4 FYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDD--KDNYIQDLKVKSGR--P 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +++ FEG + G + E ++ +L+DGEFY +++G V E L+
Sbjct: 60 QKNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVY--ENDILI 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + GAND+ V R + +P++ ++ VD+N
Sbjct: 118 GQISEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPVILNVDVNQ 158
Query: 257 REMQITPPKGL 267
+ ++ +GL
Sbjct: 159 HRVDVSIMEGL 169
>gi|381164857|ref|ZP_09874087.1| 16S rRNA processing protein RimM [Saccharomonospora azurea NA-128]
gi|418461533|ref|ZP_13032605.1| 16S rRNA processing protein RimM [Saccharomonospora azurea SZMC
14600]
gi|359738403|gb|EHK87291.1| 16S rRNA processing protein RimM [Saccharomonospora azurea SZMC
14600]
gi|379256762|gb|EHY90688.1| 16S rRNA processing protein RimM [Saccharomonospora azurea NA-128]
Length = 174
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ FV VG V HG++GE++V+ TD PE RF PG + G + R + + R
Sbjct: 1 MQFV-VGRVVKPHGIRGELAVEVRTDSPEERFD-PGVVLTGRSRDG--STRPLTVAAVRP 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ ++ F + A G TLL + P ++D EFY L G+R + + G
Sbjct: 57 HGGR--LLVRFREVPDRTAAEEARGLTLLIDADELPPIDDPDEFYDHQLEGLRAELTD-G 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VGTV V +S +LL SV+V E S R V +PFV IVP VD
Sbjct: 114 TAVGTVREVVHSPGGELL------SVDVGE----------PGSPREVLVPFVTAIVPHVD 157
Query: 254 MNGREMQITPPKGLLE 269
+ + + PP+GLL+
Sbjct: 158 LAEGRIVLDPPEGLLD 173
>gi|441522899|ref|ZP_21004538.1| ribosome maturation factor RimM [Gordonia sihwensis NBRC 108236]
gi|441457539|dbj|GAC62499.1| ribosome maturation factor RimM [Gordonia sihwensis NBRC 108236]
Length = 175
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 93/200 (46%), Gaps = 34/200 (17%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR----QQVLGRETIREVKLI 130
+D V +G V HG++GE+ V TD P RF GTR LR + G ET E ++
Sbjct: 1 MDLV-IGRVVKTHGVRGEVVVDIRTDDPAGRFAV-GTR-LRGRAPRTAGGGET--EYEVT 55
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVM 189
R H G+ +L+ G+ ++A L G+ + D +D EFY +L G+ V
Sbjct: 56 AARMHAGR--LLLSLAGVGGRDEADRLRGTLFVIDAADVDSGDDPDEFYDHELEGLPVAT 113
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
GE VGTV V + +LL S + GR V +PFV EIV
Sbjct: 114 V-GGESVGTVREVLHLPGGELL-------------------SVTTGDGREVLVPFVREIV 153
Query: 250 PIVDMNGREMQITPPKGLLE 269
P V G ++I PP GL++
Sbjct: 154 PTVTREG--IEIDPPDGLID 171
>gi|84498357|ref|ZP_00997154.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
gi|84381857|gb|EAP97740.1| 16S rRNA-processing protein [Janibacter sp. HTCC2649]
Length = 183
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HGL+GE++V+ TD PE R+ PGT + + G R + + R H ++ W+L F
Sbjct: 17 HGLRGEVTVQTHTDDPEARY-VPGTVFDTEAQPGTGVPRTLTVSTARLH--RQIWLLGFA 73
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGE---FYTRDLVGMRVVMKETGELVGTVVNVF 203
I A L G+ L + E+E E FY DLVG+ V +G ++G V +
Sbjct: 74 EIPDRTGAESLRGTQLFLDPDEADEVESDEDDGFYEHDLVGL-AVQDPSGAVLGEVTGLV 132
Query: 204 NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 263
DLL V + +V+ +PFVE IV +D+ + +
Sbjct: 133 LGAVQDLLEVRLTNRRDVL-------------------VPFVEAIVTEIDIEAGHVVVDA 173
Query: 264 PKGLLELN 271
P GL +L+
Sbjct: 174 PAGLFDLD 181
>gi|403378834|ref|ZP_10920891.1| 16S rRNA-processing protein RimM [Paenibacillus sp. JC66]
Length = 180
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HG++GE+ V PSTDF ++RF G++ + + I V++ R+ +
Sbjct: 7 NVGKIVNTHGIRGELKVVPSTDFADIRFAK-GSKLVLTDEHSDQHI-PVEVTSARQQ--K 62
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+++ + + + + G L E + ELE GE+Y ++G R V+ E GE +G
Sbjct: 63 NVFLIKLNDWNDINEVQKYKGWRLKIAESELSELEPGEYYHHQIIGCR-VLTEDGEELGQ 121
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V + + GAND+ V E + + R + IP+++++V VD+ +
Sbjct: 122 VSEILSPGANDVWVV-------------ERTQVSPGGKNRPLLIPYIDDVVLDVDLPQQV 168
Query: 259 MQITPPKGLLEL 270
+ I +GLL+L
Sbjct: 169 ITIRLMEGLLDL 180
>gi|392408763|ref|YP_006445370.1| 16S rRNA processing protein RimM [Desulfomonile tiedjei DSM 6799]
gi|390621899|gb|AFM23106.1| 16S rRNA processing protein RimM [Desulfomonile tiedjei DSM 6799]
Length = 170
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 32/189 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G V G++GEI V+P T+ L R ++ ET EV R H G
Sbjct: 9 IGKAVKVFGIKGEIKVRPYTE--SLTSFENSVR-----LVFDETAYEVAGF--RVHKG-- 57
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ ++ +GIDT E+AR LVG + E + P E+ E+Y +L+GMRVV K+ EL G +
Sbjct: 58 AILVRLQGIDTPEKARELVGKLVKTNEENLPAKEEDEYYWFELLGMRVVTKDGREL-GKI 116
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ +GAND+LHV EG G ++ +P ++++V VD M
Sbjct: 117 SQITPTGANDVLHV---------EGE----------FGEIL-LPMIDDVVLEVDTETETM 156
Query: 260 QITPPKGLL 268
+ P +GL+
Sbjct: 157 TVDPLEGLI 165
>gi|406599651|ref|YP_006744997.1| 16S rRNA processing protein RimM [Leuconostoc gelidum JB7]
gi|406371186|gb|AFS40111.1| 16S rRNA processing protein RimM [Leuconostoc gelidum JB7]
Length = 173
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ VG + + HG++GE+ + TDF RF + Q+ ++ VK+ R H
Sbjct: 6 NYFKVGTIVNTHGIRGEVKIMAITDFAADRFK----KGAELQIDTKQGFVPVKVQASRMH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ W++ FEG+ + + + G R L D E+Y +++G RV+ E +
Sbjct: 62 --KNMWLVLFEGVTNINEIEKYKTHDIYVIGGAREALGDDEYYYNEIIGCRVIDLEDND- 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + +GAND+ V S + S A IP ++++V VD+
Sbjct: 119 IGVISEIMETGANDVWVV-----------SRDGQSDA--------LIPMIDDVVKNVDVA 159
Query: 256 GREMQITPPKGLLE 269
G+ + I +GLL+
Sbjct: 160 GKLVTIDALEGLLD 173
>gi|392407868|ref|YP_006444476.1| 16S rRNA processing protein RimM [Anaerobaculum mobile DSM 13181]
gi|390621004|gb|AFM22151.1| 16S rRNA processing protein RimM [Anaerobaculum mobile DSM 13181]
Length = 186
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 38/210 (18%)
Query: 68 VETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPE-------LRFTTP-GTRWLRQQVL 119
V S S + V +G + HG++GE+ + P TDFP+ L P G+ W R
Sbjct: 7 VNGSMSCKELVTIGRIVGAHGIRGELRLLPLTDFPDRFNHMNHLNVYRPNGSFWCRL--- 63
Query: 120 GRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYT 179
TI + REH G+K +I+ + I ++A L G ++ +R EL +G ++
Sbjct: 64 ---TINSL-----REHVGKKQFIVGVDEIADRDEAENLRGGIVMIDPEERVELPEGFYWV 115
Query: 180 RDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL 239
DL+G+ V+ E G+ +G +V + +G+ND V V+E + G+
Sbjct: 116 DDLIGLDVMDVEGGDRLGVLVEIMPTGSND---------VYVVEACD----------GKR 156
Query: 240 VWIPFVEEIVPIVDMNGREMQITPPKGLLE 269
+P + E+V +++ +++ +GL E
Sbjct: 157 HMLPAISEVVKEINVEEGFIKVHLMEGLWE 186
>gi|397679975|ref|YP_006521510.1| ribosome maturation factor RimM [Mycobacterium massiliense str. GO
06]
gi|414581400|ref|ZP_11438540.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-1215]
gi|418247628|ref|ZP_12874014.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus 47J26]
gi|420881373|ref|ZP_15344740.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0304]
gi|420885419|ref|ZP_15348779.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0421]
gi|420891301|ref|ZP_15354648.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0422]
gi|420895307|ref|ZP_15358646.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0708]
gi|420901730|ref|ZP_15365061.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0817]
gi|420907446|ref|ZP_15370764.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-1212]
gi|420932342|ref|ZP_15395617.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-151-0930]
gi|420938624|ref|ZP_15401893.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-152-0914]
gi|420942601|ref|ZP_15405857.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-153-0915]
gi|420948322|ref|ZP_15411572.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-154-0310]
gi|420952860|ref|ZP_15416103.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0626]
gi|420957031|ref|ZP_15420267.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0107]
gi|420963264|ref|ZP_15426488.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-1231]
gi|420973331|ref|ZP_15436523.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0921]
gi|420992983|ref|ZP_15456129.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0307]
gi|420998755|ref|ZP_15461891.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0912-R]
gi|421003277|ref|ZP_15466400.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0912-S]
gi|353452121|gb|EHC00515.1| 16S rRNA-processing protein RimM [Mycobacterium abscessus 47J26]
gi|392078561|gb|EIU04388.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0422]
gi|392081182|gb|EIU07008.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0421]
gi|392086282|gb|EIU12107.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0304]
gi|392094619|gb|EIU20414.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0708]
gi|392099091|gb|EIU24885.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0817]
gi|392105350|gb|EIU31136.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-1212]
gi|392116552|gb|EIU42320.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-1215]
gi|392137101|gb|EIU62838.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-151-0930]
gi|392144139|gb|EIU69864.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-152-0914]
gi|392147698|gb|EIU73416.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-153-0915]
gi|392155352|gb|EIU81058.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
1S-154-0310]
gi|392156372|gb|EIU82075.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0626]
gi|392164882|gb|EIU90570.1| 16S rRNA processing protein RimM [Mycobacterium abscessus 5S-0921]
gi|392179085|gb|EIV04737.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0307]
gi|392184896|gb|EIV10546.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0912-R]
gi|392193849|gb|EIV19470.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0912-S]
gi|392246177|gb|EIV71654.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-1231]
gi|392251841|gb|EIV77312.1| 16S rRNA processing protein RimM [Mycobacterium massiliense
2B-0107]
gi|395458240|gb|AFN63903.1| Ribosome maturation factor RimM [Mycobacterium massiliense str. GO
06]
Length = 173
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG+ GE+SV+ TD P+ RF R G R+ + REH G+
Sbjct: 5 VGRIAKAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGS--RQFTVESVREHSGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGT 198
++ F G+ + A L G+ + D P ++D EFY L G+ V + G VGT
Sbjct: 62 -LLIRFAGVSDRDAADALRGTLFMVDTTDLPPIDDPDEFYDHQLEGLAVRTLD-GTAVGT 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ +LL V G E R + +PFV IV + + +
Sbjct: 120 VSEVLHTPGGELLSV---------RGPER----------REILVPFVSAIVTSISLADKV 160
Query: 259 MQITPPKGLLELN 271
++I PP+GLL+L+
Sbjct: 161 IEIDPPEGLLDLS 173
>gi|26988196|ref|NP_743621.1| 16S rRNA-processing protein RimM [Pseudomonas putida KT2440]
gi|386013606|ref|YP_005931883.1| protein RimM [Pseudomonas putida BIRD-1]
gi|397695591|ref|YP_006533474.1| ribosome maturation factor rimM [Pseudomonas putida DOT-T1E]
gi|421522719|ref|ZP_15969360.1| 16S rRNA-processing protein RimM [Pseudomonas putida LS46]
gi|37999637|sp|Q88MV5.1|RIMM_PSEPK RecName: Full=Ribosome maturation factor RimM
gi|24982933|gb|AAN67085.1|AE016337_8 16S rRNA processing protein RimM [Pseudomonas putida KT2440]
gi|313500312|gb|ADR61678.1| RimM [Pseudomonas putida BIRD-1]
gi|397332321|gb|AFO48680.1| Ribosome maturation factor rimM [Pseudomonas putida DOT-T1E]
gi|402753819|gb|EJX14312.1| 16S rRNA-processing protein RimM [Pseudomonas putida LS46]
Length = 178
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 25/187 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE----GKVKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y LVG++V+ ++ +
Sbjct: 63 -GSQKGLVVKLKGLDDRDEARLLSGYEICIPRSLLPNLAADEYYWYQLVGLKVINQDE-Q 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G V ++ +GAND++ V + + + D RL +P+ E+ V +D+
Sbjct: 121 LFGKVDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTEQCVLAIDL 165
Query: 255 NGREMQI 261
M++
Sbjct: 166 EAGVMRV 172
>gi|374582900|ref|ZP_09655994.1| 16S rRNA processing protein RimM [Desulfosporosinus youngiae DSM
17734]
gi|374418982|gb|EHQ91417.1| 16S rRNA processing protein RimM [Desulfosporosinus youngiae DSM
17734]
Length = 165
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 36/196 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLR-QQVLGR--ETIREVKLID 131
+D V +G V HG+ GE+ V P T+ P+ R+L+ Q+V+ R +T + K+I
Sbjct: 1 MDEVLIGEVLRPHGIDGEMRVYPVTNSPK--------RFLKLQEVILRCGKTDQRFKIIK 52
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
R ++ +L EGIDTV+QA L G + + P L++G +Y +L GM+V E
Sbjct: 53 ARVQ--MENVLLKVEGIDTVDQAEKLRGCEVRIDRSEVPPLKEGWYYF-ELEGMQVY--E 107
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
L+GT+ V +GAND V V++G + G L +P + +V
Sbjct: 108 GDLLLGTLSQVLETGAND---------VYVVKGPK----------GELC-VPALRSVVRN 147
Query: 252 VDMNGREMQITPPKGL 267
VD+ GR M + P GL
Sbjct: 148 VDVPGRRMDVILPPGL 163
>gi|148549464|ref|YP_001269566.1| 16S rRNA-processing protein RimM [Pseudomonas putida F1]
gi|395445110|ref|YP_006385363.1| 16S rRNA-processing protein RimM [Pseudomonas putida ND6]
gi|166226468|sp|A5W8C2.1|RIMM_PSEP1 RecName: Full=Ribosome maturation factor RimM
gi|148513522|gb|ABQ80382.1| 16S rRNA processing protein RimM [Pseudomonas putida F1]
gi|388559107|gb|AFK68248.1| 16S rRNA-processing protein RimM [Pseudomonas putida ND6]
Length = 178
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 25/187 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE----GKVKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y LVG++V+ ++ +
Sbjct: 63 -GSQKGLVVKLKGLDDRDEARLLSGYEICIPRSLLPNLAADEYYWYQLVGLKVINQDE-Q 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G V ++ +GAND++ V + + + D RL +P+ E+ V +D+
Sbjct: 121 LFGKVDHMLETGANDVMVV-------------KPCAGSLDDRERL--LPYTEQCVLAIDL 165
Query: 255 NGREMQI 261
M++
Sbjct: 166 EAGVMRV 172
>gi|291545205|emb|CBL18314.1| 16S rRNA processing protein RimM [Ruminococcus champanellensis
18P13]
Length = 170
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPEL--RFTTPGTRWLRQQVLGRETIREVKLIDGR 133
+ +++G V ++HGL+G++ ++P D F T L R + ++ R
Sbjct: 4 NLLEIGKVVNIHGLRGDVKIQPWCDSAGFLCEFDT----------LYRADGTPMSVVSAR 53
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G ++ F GIDT EQA L + L D EL+ ++ RDL+G++V+ +TG
Sbjct: 54 AHKGMA--VVRFAGIDTPEQAEALRNTVLYMNRAD-VELDADTYFIRDLIGLQVLDADTG 110
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ G + V +GAND V I E G+ + P + ++V D
Sbjct: 111 AVYGRLEEVLETGAND---------VYTIRTPE----------GKQLLFPAIGDVVVETD 151
Query: 254 MNGREMQITPPKGLLE 269
+ M+I P +GL +
Sbjct: 152 LEQGIMRIRPLEGLFD 167
>gi|152985572|ref|YP_001346759.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PA7]
gi|166226466|sp|A6V124.1|RIMM_PSEA7 RecName: Full=Ribosome maturation factor RimM
gi|150960730|gb|ABR82755.1| 16S rRNA processing protein RimM [Pseudomonas aeruginosa PA7]
Length = 175
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ R+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGETRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWYQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 GQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|419861093|ref|ZP_14383732.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982427|gb|EIK55932.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 166
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDSGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|258406143|ref|YP_003198885.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
gi|257798370|gb|ACV69307.1| 16S rRNA processing protein RimM [Desulfohalobium retbaense DSM
5692]
Length = 182
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
V +G + GL+GE+ ++P DFP F + +L+ + R + ++ R H
Sbjct: 6 LVPIGRIAKPLGLRGEVCLEPHADFP-FVFASLERIYLQFE---RRRPKPYAVLSHRVHK 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +L GI+ + A + G +LAR D PE +D +DL G RV + E G V
Sbjct: 62 GRD--VLLLHGIEGRDAAESIRGREVLARARDLPEPDDAVLLRQDLPGCRVEL-EDGAWV 118
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+ V ++ A D V VI G + G+ + P E V VD+
Sbjct: 119 GEVLEVQDNRAQD---------VWVILGPQ----------GQEILFPVCEAFVLDVDLER 159
Query: 257 REMQITPPKGLLELNLRTDERSK 279
R + I PP+GLL+L L + ++
Sbjct: 160 RVVVIRPPEGLLDLYLHNGDDTR 182
>gi|407718036|ref|YP_006795441.1| 16S rRNA-processing protein RimM [Leuconostoc carnosum JB16]
gi|407241792|gb|AFT81442.1| 16S rRNA-processing protein RimM [Leuconostoc carnosum JB16]
Length = 173
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ VG + + HG++GE+ + TDFPE RF + + Q+ ++ + + + R H
Sbjct: 6 NLFKVGTIVNTHGIRGEVKIMAITDFPENRFK----KGVELQIETKQGLVPMTVQSSRLH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ W++ FEGI + + + +R ELED E+Y +++ RVV TG +
Sbjct: 62 --KNMWLVLFEGIMNINEIEKYKTDDIYVASDERQELEDDEYYYDEIIDSRVV-NLTGNV 118
Query: 196 VGTVVNVFNSGANDL 210
+G V + +GAND+
Sbjct: 119 IGIVSEIMTTGANDV 133
>gi|393757558|ref|ZP_10346382.1| 16S rRNA-processing protein RimM [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165250|gb|EJC65299.1| 16S rRNA-processing protein RimM [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 199
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 25/198 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ-------VLGRETIREVK 128
D V++G + S +G++G + ++P + T WL+ V + R+++
Sbjct: 9 DLVELGRIVSAYGVRGWVKIQPHS-MQTKALLNAKTWWLKTPRPESQAGVFASASPRQIQ 67
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
++H + + FEG+D E A+ L G T+ P +D EFY DL+G R
Sbjct: 68 --TAKQHGA--TIVAQFEGLDNREVAQALKGHTVWVSRAAFPPADDDEFYWVDLIGCRFF 123
Query: 189 MKETG--ELVGTVVNVFNSGANDLL--HVMCYSSVNVIEGSEEASSSASDASGRLV--WI 242
++ G L+G V V ++GA+ +L H C+ + V + D GR + +
Sbjct: 124 GEQEGHAHLLGQVAEVLDNGAHSILVVHRGCWDANGVF-------APEKDEQGRPLEELV 176
Query: 243 PFVEEIVPIVDMNGREMQ 260
PFV+ IV VD+ RE+
Sbjct: 177 PFVQAIVHTVDLPARELH 194
>gi|374603420|ref|ZP_09676400.1| RimM [Paenibacillus dendritiformis C454]
gi|374391016|gb|EHQ62358.1| RimM [Paenibacillus dendritiformis C454]
Length = 172
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 24/189 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++G++ + STDFPE RF + G+ + Q ET + + R P +
Sbjct: 8 VGKLVNTHGIRGDVKIVASTDFPEERFAS-GSELILQH---PETKESLLVTVERARPQKN 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F+ D + G L + EL + E+Y +++G RVV E EL G +
Sbjct: 64 VYIVKFKNFDNINDVERYKGWILYVTAEQQKELPEDEYYYHEIIGCRVVTDEEEEL-GVI 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ GAND+ V A G+ + +P + +++ VD+ G+ +
Sbjct: 123 SEILAPGANDVWVV-------------------KPAKGKPILLPAIPDVILDVDIPGKLV 163
Query: 260 QITPPKGLL 268
++ +GLL
Sbjct: 164 KVHLMEGLL 172
>gi|257055029|ref|YP_003132861.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
gi|256584901|gb|ACU96034.1| 16S rRNA processing protein RimM [Saccharomonospora viridis DSM
43017]
Length = 174
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG + HG++GE++V TD PE RF P T + GR R + + R H G
Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSPEERF-APETVLTGKMRDGR--TRPLTVAAVRPHGG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELV 196
+ ++ F + A + G+TLL + P ++D EFY +L G+R + + G +V
Sbjct: 60 R--LLVRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDD-GTVV 116
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV V +S +LL +V V E R V +PFV IVP V+++
Sbjct: 117 GTVREVVHSPGGELL------AVEVEESGRR----------REVLVPFVAAIVPRVEVDR 160
Query: 257 REMQITPPKGLLEL 270
+ + PP+GLL++
Sbjct: 161 GRIVLDPPEGLLDV 174
>gi|448823460|ref|YP_007416625.1| 16S rRNA processing protein [Corynebacterium urealyticum DSM 7111]
gi|448276957|gb|AGE36381.1| 16S rRNA processing protein [Corynebacterium urealyticum DSM 7111]
Length = 194
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GE+ V PSTD RF LR G+E R++ + R H
Sbjct: 4 LQIGRVIKPHGVKGEVVVDPSTDHVTERFAI--GEALRAVQTGKE--RQLTVAGLRRH-- 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVV------- 188
Q ++TFE + ++A L G+ +A P +D + +Y +L+G+RV+
Sbjct: 58 QNRLLVTFEEVRDRDEAESLRGARFMAA----PLQDDSDDGYYDHELIGLRVLNVGAVDA 113
Query: 189 -----MKETGEL-----VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR 238
GE +G V V + A L V + V++ +G
Sbjct: 114 DTANRRAYEGEQPEPVDIGEVTGVSHGPAGATLEVAVDADVDL------------PTAGS 161
Query: 239 LVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
+ IPF IVPIVD++ + +TPP+GLLEL
Sbjct: 162 TILIPFKLAIVPIVDLDNEALVVTPPEGLLEL 193
>gi|225874366|ref|YP_002755825.1| 16S rRNA processing protein RimM [Acidobacterium capsulatum ATCC
51196]
gi|254797738|sp|C1F3B3.1|RIMM_ACIC5 RecName: Full=Ribosome maturation factor RimM
gi|225791428|gb|ACO31518.1| 16S rRNA processing protein RimM [Acidobacterium capsulatum ATCC
51196]
Length = 213
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 27/213 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+V + ++ G +GE+ + TDFPE +F +L + RE++L R
Sbjct: 6 WVTLAHIVRPQGRRGEVIAELLTDFPE-KFAERRHVFLTRDAASDAAPREMELAGYRL-- 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
Q +L F GID+++ A L G ++ E +R L+ Y DL+G V + G+ V
Sbjct: 63 AQNRVVLHFAGIDSIDAAEMLRGLDVVIPESERAPLDQDAAYISDLIGCDVWDEAAGQRV 122
Query: 197 GTVVNVFNSGAN-DLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G V +V ++ DLL V C +G+ IPFV+ + +D
Sbjct: 123 GIVQDVDRQASHVDLLVVDC-------------------ENGQRAEIPFVKAFLVKLDTT 163
Query: 256 GREMQITPPKGLLELNLRT----DERSKKERRQ 284
G+ + + P+GLLE+N T + R+++ R++
Sbjct: 164 GKRITMRLPEGLLEINASTATAREPRARRTRKR 196
>gi|366053115|ref|ZP_09450837.1| 16S rRNA-processing protein RimM [Lactobacillus suebicus KCTC 3549]
Length = 167
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + +VG + + HG++GE+ V +TDFP+ RF T ++ + T++ ++
Sbjct: 1 MKYYNVGKIVNTHGIRGEVKVVSTTDFPDERFKVGNTLYIEDADPIKVTVKSARM----- 55
Query: 135 HPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
QK++ L TF+ + + Q L+ E D+ +LEDG++Y ++G+ V + G
Sbjct: 56 ---QKNFFLVTFKEFNDINQIEKFKTHQLMVSEDDQQDLEDGKYYHHQIIGLGVQTLD-G 111
Query: 194 ELVGTVVNVFNSGANDL 210
+ +GT+ + + GAND+
Sbjct: 112 KKLGTIKEILSPGANDV 128
>gi|389843181|ref|YP_006345261.1| 16S rRNA processing protein RimM [Mesotoga prima MesG1.Ag.4.2]
gi|387857927|gb|AFK06018.1| 16S rRNA processing protein RimM [Mesotoga prima MesG1.Ag.4.2]
Length = 185
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 10/150 (6%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE--VKLIDGR 133
+ V +G + HGL+GE+ VK + + E F + +++ +L E R V IDG
Sbjct: 11 EMVPIGRIVKPHGLRGEMKVKVALE-DETAF-----KEIQEVLLYDEKTRSRFVTSIDGA 64
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K WIL FEGID++ QA LVG + E PEL+ GE+Y ++G V E
Sbjct: 65 RR-ATKGWILHFEGIDSMGQAERLVGFHIYVEERVLPELKQGEYYYFQILGSS-VFDENR 122
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIE 223
+GTV ++ +GAND++ V+ + V E
Sbjct: 123 RFIGTVNDIIETGANDVMVVVREEDLTVRE 152
>gi|71281652|ref|YP_270723.1| 16S rRNA-processing protein RimM [Colwellia psychrerythraea 34H]
gi|109893008|sp|Q47WU9.1|RIMM_COLP3 RecName: Full=Ribosome maturation factor RimM
gi|71147392|gb|AAZ27865.1| 16S rRNA processing protein RimM [Colwellia psychrerythraea 34H]
Length = 176
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+G V +V+G++G + + TD E L + + LG T + V++ D R+H
Sbjct: 10 LGKVGAVYGIKGWLKIHSFTDETEAILDYFPWSLK------LGNNT-QTVEITDWRKH-- 60
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K I+ GID ++A+ LVGS +L E PEL + +FY RDL+GM VV + +L G
Sbjct: 61 NKVLIVKVAGIDDRDEAQALVGSEILTNEAALPELSEDDFYWRDLIGMSVVTNKGYDL-G 119
Query: 198 TVVNVFNSGANDLLHV 213
V ++ +GAND+L V
Sbjct: 120 VVTDMMETGANDVLVV 135
>gi|59798128|sp|Q5WFN5.2|RIMM_BACSK RecName: Full=Ribosome maturation factor RimM
Length = 173
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + + HG++GE+ V +TDFPE R+ L+ + + E L+ R H
Sbjct: 3 NWYNVGRLVNTHGVRGEVRVLSNTDFPEERYANGSV--LK---VAKSPQAEGTLVTVRSH 57
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LTFEG +++ + GS L E EL++ E+Y +++G VV E G
Sbjct: 58 RTHKNFDLLTFEGYNSINEVECFKGSYLYVSEDQLSELDEHEYYYHEIIGCTVV-DEEGT 116
Query: 195 LVGTVVNVFNSGANDL 210
+G + ++ +GAND+
Sbjct: 117 KLGKIKDIIETGANDV 132
>gi|172040481|ref|YP_001800195.1| 16S rRNA-processing protein RimM [Corynebacterium urealyticum DSM
7109]
gi|209573573|sp|B1VG72.1|RIMM_CORU7 RecName: Full=Ribosome maturation factor RimM
gi|171851785|emb|CAQ04761.1| 16S rRNA processing protein [Corynebacterium urealyticum DSM 7109]
Length = 194
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GE+ V PSTD RF LR G+E R++ + R H
Sbjct: 4 LQIGRVIKPHGVKGEVVVDPSTDHVPERFAI--GEALRAVQTGKE--RQLTVTGMRRH-- 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGEL 195
Q ++TFE I ++A L G+ +A P +D + +Y +L+G+RV+ G +
Sbjct: 58 QNRLLVTFEEIRDRDEAESLRGARFMAA----PLHDDSDDGYYDHELIGLRVL--NVGSV 111
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEAS-SSASDA------SGRLVWIPFVEEI 248
N V V G A+ A DA +G + IPF I
Sbjct: 112 DADTANRRAYEGEQPEPVDIGEVTGVSHGPAGATLEVAVDADADLPTAGSTILIPFKLAI 171
Query: 249 VPIVDMNGREMQITPPKGLLEL 270
VPIVD++ + +TPP+GLLEL
Sbjct: 172 VPIVDLDNEALVVTPPEGLLEL 193
>gi|291542203|emb|CBL15313.1| 16S rRNA processing protein RimM [Ruminococcus bromii L2-63]
Length = 171
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+D G + HG++GE+ + P D PE WL + G E I EVK P
Sbjct: 5 FLDSGKIVGTHGIKGEVRIDPWCDSPEF-LCAFKKLWLDEN--GTEFI-EVK-----SRP 55
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ + +G+DT+E A G + D L +G + +DL+G+ V G +
Sbjct: 56 HKNIALAKIKGVDTIEAAEKYRGKVVYINRDD-INLAEGVHFVQDLIGLEVKDAGNGRVY 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + +V +GAND+ + DA G+ P ++++V +++N
Sbjct: 115 GKISDVLRTGANDVYEI-------------------KDADGKTYLAPVIDDVVKEINVND 155
Query: 257 REMQITPPKGLLE 269
+ I P KG+ +
Sbjct: 156 GYVLIVPMKGIFD 168
>gi|167769123|ref|ZP_02441176.1| hypothetical protein ANACOL_00446 [Anaerotruncus colihominis DSM
17241]
gi|167668763|gb|EDS12893.1| 16S rRNA processing protein RimM [Anaerotruncus colihominis DSM
17241]
Length = 185
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 32/195 (16%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPG--TRWLRQQVLGRETIREVKLIDGRE 134
+++ G + + HG++GE+ V+P D TPG T++ + R + + ++++ R
Sbjct: 20 YLESGKIVTTHGVRGEVRVQPWCD-------TPGFLTQFACLYLDARGS--QARVVE-RA 69
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ I+ FEG++ VE A L G T+ D ELE+GE + +DL+G V +TG
Sbjct: 70 RVHKNIVIVKFEGVENVEDAAGLRGKTVYIDRAD-VELEEGECFVQDLIGCTVRDADTGA 128
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G V +V +GAND+ ++ DA+GR +P + ++V D+
Sbjct: 129 DYGQVYDVRATGANDVYYL-------------------RDAAGRERLVPAIADVVLAKDL 169
Query: 255 NGREMQITPPKGLLE 269
+ + I P +GL +
Sbjct: 170 DAGIITIRPLEGLFD 184
>gi|218283555|ref|ZP_03489545.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
gi|218215823|gb|EEC89361.1| hypothetical protein EUBIFOR_02135 [Eubacterium biforme DSM 3989]
Length = 162
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ V + + HGL+GE + TD P+ RF + +VL E R + ++ RE G
Sbjct: 2 IKVAQIINTHGLKGECKLYLVTDDPQHRFE-------KGRVLHLEDGRTLTVVRYREQKG 54
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
FEGID++E+A L L + D PELE+G++Y +L+ V E E +G
Sbjct: 55 FG--YCYFEGIDSIEKAEQLKTKNLFIAQDDLPELEEGQYYYHELMNC-TVYNEKKENLG 111
Query: 198 TVVNVFNSGANDLLHV 213
VV++ +GAN +L V
Sbjct: 112 EVVDILETGANLVLRV 127
>gi|455651551|gb|EMF30277.1| 16S rRNA-processing protein RimM [Streptomyces gancidicus BKS
13-15]
Length = 192
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 34/194 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE--TIREVKLIDGREHPG 137
V + HG++GE++V+ TD PELR PGT VL + + + + GR H G
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLG-PGT------VLATDPASAGPLTIATGRVHSG 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGEL 195
+ +L FEG+ A L +TLL + D EL +GE +Y L+ + VV E GE
Sbjct: 58 R--LLLRFEGVHDRTGAEAL-RNTLLIADVDPEELPEGEDEYYDHQLIDLDVVT-EDGEP 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + + + DL V+E + G V++PFVEEIV +D+
Sbjct: 114 VGRITEISHLPTQDLF---------VVERPD----------GTEVFVPFVEEIVTEIDLE 154
Query: 256 GREMQITPPKGLLE 269
+ I PP GL++
Sbjct: 155 EQRAVIDPPPGLID 168
>gi|373252390|ref|ZP_09540508.1| 16S rRNA-processing protein RimM [Nesterenkonia sp. F]
Length = 196
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI-REVKLIDGREHPGQ 138
V V HG++GE++V+ TD PE R PG LR GR+T RE + + +
Sbjct: 27 VARVGKPHGVRGEVTVQLFTDDPEHRLA-PGAELLRTP--GRQTPDRETRALTVTSRRWK 83
Query: 139 KS-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K+ +L F +D + A L GS L E + +Y+ + G V GE +G
Sbjct: 84 KAICLLGFAEVDGRDAAEALRGSVLHVEVPAETEGSEDGWYSHQIAGFACV-DPAGETLG 142
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V+ + A DLL V+ D SG + +PFVEEIVP VD R
Sbjct: 143 RVLQLVTGPAQDLLVVV-------------------DESGEEIMVPFVEEIVPEVDAARR 183
Query: 258 EMQITPPKGLL 268
+ + PP GL
Sbjct: 184 VVTLDPPDGLF 194
>gi|145593858|ref|YP_001158155.1| 16S rRNA-processing protein RimM [Salinispora tropica CNB-440]
gi|209573594|sp|A4X4H7.1|RIMM_SALTO RecName: Full=Ribosome maturation factor RimM
gi|145303195|gb|ABP53777.1| 16S rRNA processing protein RimM [Salinispora tropica CNB-440]
Length = 180
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGTRWLRQ----QVLGRETIREVK 128
VG + HG++GE++V+ TD PE RF T PG +V G T+ +
Sbjct: 4 VGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVEAAR 63
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRV 187
GR ++TFEG+ A L G+ + D P + EF+ LVG+ V
Sbjct: 64 WHQGR------VLLVTFEGVLDRNVAEALRGTLVGVDRADVAPPTDPEEFHDHQLVGLAV 117
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
V GE +G + + ++ A DLL + R V IPFV+
Sbjct: 118 VT-SAGERLGEIARIDHAPAADLLVL-------------------RRPGRRDVLIPFVQA 157
Query: 248 IVPIVDMNGREMQITPPKGLLEL 270
IVP +D+ G + + PP GLL+L
Sbjct: 158 IVPEIDLAGGRVVVDPPGGLLDL 180
>gi|238926146|ref|ZP_04657906.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304437005|ref|ZP_07396968.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|238886036|gb|EEQ49674.1| possible 16S rRNA processing protein [Selenomonas flueggei ATCC
43531]
gi|304369956|gb|EFM23618.1| 16S rRNA processing protein RimM [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 169
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 31/186 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + + HG++G++ + P TDFPE RF +R+ + G E + + P +
Sbjct: 15 IGRIGAPHGVRGDLRIIPLTDFPE-RFAQ-----MREVMAGDELLHITAV-----KPQGR 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ ++ F D E A+ L G L + L++GE+Y D+VG+ V E G +GTV
Sbjct: 64 NILMHFREYDVRETAQRLTGRVLTVPRAEAAPLDEGEYYVFDIVGL-TVRDEDGNELGTV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+V +G+ND+ V DA G + +P + +V +D G M
Sbjct: 123 TDVLRTGSNDVYAV-------------------RDAEGHELLVPALRTVVQNIDTAGGCM 163
Query: 260 QITPPK 265
+ P+
Sbjct: 164 TVRLPE 169
>gi|108760176|ref|YP_631740.1| 16S rRNA-processing protein RimM [Myxococcus xanthus DK 1622]
gi|122388855|sp|Q1D6I3.1|RIMM_MYXXD RecName: Full=Ribosome maturation factor RimM
gi|108464056|gb|ABF89241.1| 16S rRNA processing protein RimM [Myxococcus xanthus DK 1622]
Length = 188
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++GYV HGL+GE++++ + D T W+R + G E RE++L R P
Sbjct: 7 YLELGYVARAHGLRGEVAIR-ALDPASETLDTVDRIWVRTRA-GVE--REMRLEALRPTP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
K I+ EG+++ A LVG+ + D +GEF+ DLVG+ V G +
Sbjct: 63 --KEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAV-DANGNAL 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR--LVWIPFVEEIVPIVDM 254
G V ++ +G E + ASGR LV +PF +E VP VD+
Sbjct: 120 GRVEEIWTTG--------------------EVPNLVIRASGREELV-VPFADEFVPTVDL 158
Query: 255 NGREMQITPPK 265
R + I PP+
Sbjct: 159 EARRIVIHPPE 169
>gi|336117294|ref|YP_004572061.1| ribosome maturation factor RimM [Microlunatus phosphovorus NM-1]
gi|334685073|dbj|BAK34658.1| ribosome maturation factor RimM [Microlunatus phosphovorus NM-1]
Length = 176
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 30/199 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V VG V HG++G++ ++ TD PE RF PG+R LR + G R + + R+H G
Sbjct: 7 VIVGIVGRAHGIRGDVGIELRTDEPERRF-APGSR-LRIEGSG----RSLTVTSTRDHSG 60
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAR-EGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ ++ F+ A L G+ L+ + D ++ EFY R L G+RV E V
Sbjct: 61 R--LLVRFDECPDRTAAELLRGAVLVVDVDADERPGDEEEFYDRQLTGLRVFDAADAE-V 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G+V +V + DLL + + RLV PFV IVP VD+
Sbjct: 118 GSVADVIHLPGQDLLEIQ------------------TPTGKRLV--PFVRAIVPKVDLTA 157
Query: 257 REMQITPPKGLLELNLRTD 275
R +Q+ GLL + +D
Sbjct: 158 RLVQLADVPGLLVDEIDSD 176
>gi|338213517|ref|YP_004657572.1| ribosome maturation factor rimM [Runella slithyformis DSM 19594]
gi|336307338|gb|AEI50440.1| Ribosome maturation factor rimM [Runella slithyformis DSM 19594]
Length = 189
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +G++ HG +GE+ + DFPE + + ++ ++ G+ +K I+ ++
Sbjct: 5 DCFQLGHITRTHGTKGEVVIFLDVDFPE-DYDELDSVFV--EIKGQLVPYFIKNINVQK- 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G K+ I+ FE I+++E A PL+ L E EL+ +FY +++G +V+ ++ GEL
Sbjct: 61 -GSKA-IVKFEDINSIEAAVPLLNCALFLPEETLDELDGSQFYYHEIIGFKVMDEKLGEL 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G V V+ DL+ A + G V IP + IVP +D
Sbjct: 119 -GIVTTVYTMSTQDLI--------------------AMEYRGSEVLIPVNDAIVPNIDRA 157
Query: 256 GREMQITPPKGLLELNLRTDERSKKERRQ 284
+ + ++ P+GLL+ + TDE S E Q
Sbjct: 158 LKILHVSLPEGLLD--VYTDETSTPEDGQ 184
>gi|281492128|ref|YP_003354108.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
gi|281375811|gb|ADA65308.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp. lactis
KF147]
gi|374673595|dbj|BAL51486.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp. lactis
IO-1]
Length = 171
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + GLQGE+ V PSTDF + RF+ L I+++K+ GR P
Sbjct: 4 FYKVGTIVNTQGLQGEVRVMPSTDFAQERFSKGSVLALFDD--KDNYIQDLKVKSGR--P 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +++ FEG + G + E ++ +L+DGEFY +++G V E L+
Sbjct: 60 QKNFYVVKFEGFYHINDVEKYKGYIVKIAEENQEDLDDGEFYYHEIIGSDVY--ENDVLI 117
Query: 197 GTVVNVFNSGANDL 210
G + + GAND+
Sbjct: 118 GQISEILQPGANDV 131
>gi|395217617|ref|ZP_10401691.1| 16S rRNA processing protein RimM [Pontibacter sp. BAB1700]
gi|394454920|gb|EJF09495.1| 16S rRNA processing protein RimM [Pontibacter sp. BAB1700]
Length = 187
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 29/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G++ HG++G++ D+PE + + +L QQ R + + P QK
Sbjct: 9 LGHIVKTHGIKGQVVAFFDVDYPE-DYDDLESVFLEQQG------RLIPFFIDKMEPVQK 61
Query: 140 S-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+I+TFE I T+EQA L +L + PELE+G+FY +++G +V+ + G L GT
Sbjct: 62 GRFIITFEDIKTIEQAEKLRNVSLYLPLDELPELEEGQFYFHEVIGYQVIDQNHGPL-GT 120
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V + ++ L+ A + +G+ + +P ++E+ D +
Sbjct: 121 VKDFYDMPQQQLM--------------------AMEYNGQEMLVPVLDEVFVRADHEAKV 160
Query: 259 MQITPPKGLLEL 270
+ + P+GLLE+
Sbjct: 161 LHVNLPEGLLEV 172
>gi|257082272|ref|ZP_05576633.1| 16S rRNA-processing protein [Enterococcus faecalis E1Sol]
gi|256990302|gb|EEU77604.1| 16S rRNA-processing protein [Enterococcus faecalis E1Sol]
Length = 174
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ T L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQE---KKAPIELVVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ S++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRSKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|154503293|ref|ZP_02040353.1| hypothetical protein RUMGNA_01117 [Ruminococcus gnavus ATCC 29149]
gi|153795960|gb|EDN78380.1| 16S rRNA processing protein RimM [Ruminococcus gnavus ATCC 29149]
Length = 172
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG + S HG++GE+ V P+TD P RF + L++ +L ET +E ++ +
Sbjct: 4 FLQVGVISSTHGIRGEVKVFPTTDDPN-RF-----KKLKKVIL--ETKKEKLSLEVQGVK 55
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET-GE 194
K + I+ F+GID + G +L D LE+ E++ DL+GM V E E
Sbjct: 56 FFKQFVIVKFKGIDNINDIEQYKGCSLFVSREDAVALEEDEYFIADLIGMEVYTDENPEE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L GT+ +V +GAN+ V ++E V IP + + + VD+
Sbjct: 116 LFGTLKDVIETGANE---------VYLVESKTHGE----------VLIPAIRQCILSVDV 156
Query: 255 NGREMQITPPKGLLE 269
++MQ+ GLL+
Sbjct: 157 KAQKMQVHLLNGLLD 171
>gi|240146495|ref|ZP_04745096.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|257201351|gb|EEU99635.1| 16S rRNA processing protein RimM [Roseburia intestinalis L1-82]
gi|291535149|emb|CBL08261.1| 16S rRNA processing protein RimM [Roseburia intestinalis M50/1]
Length = 194
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 45/210 (21%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ + VG + + HG++GE+ V P+TD RF + +++V L G+EH
Sbjct: 20 NLLQVGVITTTHGVRGEVKVFPTTD-DAARF---------------KKLKQVILDTGKEH 63
Query: 136 -----PGQKSW----ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
G K + IL F+G D + +L + +L+ E++ DL+G++
Sbjct: 64 LALEIAGVKFFKNMVILKFKGYDNINDVEMFRKKSLYVTRENAVKLKKNEYFIADLIGLK 123
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V+ E GE +G + +V +GAND+ V EG+++ + +P ++
Sbjct: 124 VISDE-GEDLGELTDVLQTGANDVY-------VISKEGADD------------ILLPAIK 163
Query: 247 EIVPIVDMNGREMQITPPKGLLELNLRTDE 276
+ V VD+ G MQ+ GL +LN R +E
Sbjct: 164 DCVKQVDIEGGTMQVHLLDGLRDLNSRREE 193
>gi|94969901|ref|YP_591949.1| 16S rRNA-processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
gi|123079472|sp|Q1IMM5.1|RIMM_KORVE RecName: Full=Ribosome maturation factor RimM
gi|94551951|gb|ABF41875.1| 16S rRNA processing protein RimM [Candidatus Koribacter versatilis
Ellin345]
Length = 209
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
+S + DF+ + + G GE+ + TDFPEL F ++ + R RE++L
Sbjct: 5 SSTNTDDFITIARIQKTQGRVGEVFSELFTDFPEL-FEQRHHLYVLPEKGER---RELEL 60
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV-- 187
D H G +L F+GI+T++ A L+ S + DR +LE+G Y DLVG +
Sbjct: 61 EDHWFHKG--GVVLKFQGIETIDDAEKLLRSEVQIPRQDRAQLEEGATYVSDLVGCELFE 118
Query: 188 VMKETGELVGTVVNV-FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
+ VG V +V F++G LL V++G E IP+VE
Sbjct: 119 IHGSEARKVGVVADVDFSAGEAPLL---------VVKGDREH------------LIPYVE 157
Query: 247 EIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296
+ D + +++ P+G+LEL+ +++KER++ E E ++ +R
Sbjct: 158 SFLKSTDFKAKRIEMVLPQGMLELDAPLS-KAEKERQKSEADETREAGER 206
>gi|331081975|ref|ZP_08331103.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405570|gb|EGG85100.1| ribosome maturation factor rimM [Lachnospiraceae bacterium
6_1_63FAA]
Length = 168
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + + HG++GE+ V P+TD RF +L+ +L +T +E+ +D
Sbjct: 3 DLLQVGVITTTHGIRGEVKVFPTTDDAH-RFD-----YLKSVLL--DTGKELCELDIERV 54
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K + IL F+ +D + P G +L + RE P L++ E+YT DL+GM V + E G
Sbjct: 55 KYFKQYVILKFKDVDDINDIEPYKGKSLYVTREFAVP-LKENEYYTADLIGMEVYL-EDG 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ GT+++V +GAND+ V +G+ V IP +++ + VD
Sbjct: 113 KHFGTLMDVMETGANDVYVVHL-------------------EAGKEVLIPAIKDCIKEVD 153
Query: 254 MNGREMQITPPKGL 267
+ +M + KGL
Sbjct: 154 VENGKMVVHLLKGL 167
>gi|366089285|ref|ZP_09455758.1| 16S rRNA processing protein [Lactobacillus acidipiscis KCTC 13900]
Length = 171
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKLIDG 132
+ + +VG + + HG++GE+ V +TDF E RF PG QVL ++ VKL
Sbjct: 1 MTYFNVGEIVNTHGIRGEVKVLATTDFTEERF-VPG------QVLYVSQKNSSPVKLTVK 53
Query: 133 REHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
R H QK + IL FE I+ + + G+ L + LE+G +Y R+++G+ V E
Sbjct: 54 R-HWSQKQFEILAFEEINDINEVEKYKGAQLQITSEQQSPLEEGAYYYREIIGLEVYSLE 112
Query: 192 TGELVGTVVNVFNSGANDLLHV 213
EL+GT+ V +GAND+ V
Sbjct: 113 D-ELLGTISEVMETGANDVWVV 133
>gi|312898906|ref|ZP_07758294.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
gi|310620068|gb|EFQ03640.1| 16S rRNA processing protein RimM [Megasphaera micronuciformis
F0359]
Length = 166
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F +G + + HG++G++ V P TDFPE RF T ++ + ++ D R H
Sbjct: 5 EFFTIGQIVAPHGVRGDVRVYPDTDFPE-RFLTMKYAYIDGV--------KYEITDARFH 55
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ ++ F GI PL+ L D LE+G+ Y D++G RV KE +
Sbjct: 56 --KRVVLMKFVGIHDRNGVEPLLHKELQVTRQDLMPLEEGQHYVFDIIGCRVFDKEN-NV 112
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ +G+ND+ V +D G+ + + + +++ VD +
Sbjct: 113 LGTVTDILKTGSNDVYIV-------------------TDEDGKELLLAVIPQVILSVDTD 153
Query: 256 GREMQITPPK 265
+ + PP+
Sbjct: 154 TKTIIADPPE 163
>gi|49081574|gb|AAT50187.1| PA3744, partial [synthetic construct]
Length = 176
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 RQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|15598939|ref|NP_252433.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAO1]
gi|418586020|ref|ZP_13150066.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa MPAO1/P1]
gi|418589552|ref|ZP_13153474.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa MPAO1/P2]
gi|421152448|ref|ZP_15612028.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
14886]
gi|421518288|ref|ZP_15964962.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAO579]
gi|14423891|sp|Q9HXQ0.1|RIMM_PSEAE RecName: Full=Ribosome maturation factor RimM
gi|9949912|gb|AAG07131.1|AE004793_8 16S rRNA processing protein [Pseudomonas aeruginosa PAO1]
gi|375043694|gb|EHS36310.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa MPAO1/P1]
gi|375051786|gb|EHS44252.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa MPAO1/P2]
gi|404347770|gb|EJZ74119.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa PAO579]
gi|404525208|gb|EKA35484.1| 16S rRNA-processing protein RimM [Pseudomonas aeruginosa ATCC
14886]
Length = 175
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 7 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 59 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+L+G + ++ +GAND++ V + + + D RL +P+ + V +
Sbjct: 116 RQLLGVIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTGQCVLSI 160
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 161 DLAAGEMRV 169
>gi|338534781|ref|YP_004668115.1| 16S rRNA processing protein RimM [Myxococcus fulvus HW-1]
gi|337260877|gb|AEI67037.1| 16S rRNA processing protein RimM [Myxococcus fulvus HW-1]
Length = 187
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++GYV HGL+GE++++ + D T W+R + G E RE++L R P
Sbjct: 6 YLELGYVSRAHGLRGEVAIR-ALDPASETLDTVDRIWVRTRA-GVE--RELRLEALRPTP 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
K ++ EG++T A LVG+ + D E+GE++ DLVG+ V + G +
Sbjct: 62 --KENLVVLEGVETRNDAEALVGAKVFVFREDLEPPEEGEYFQGDLVGLEAVDAQ-GNAL 118
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR--LVWIPFVEEIVPIVDM 254
G V ++ +G E + A+GR LV +PF +E VP VD+
Sbjct: 119 GRVEEIWATG--------------------EVPNLVIRAAGREELV-VPFADEFVPTVDL 157
Query: 255 NGREMQITPPK 265
R + I PP+
Sbjct: 158 AARRIVIHPPE 168
>gi|410460653|ref|ZP_11314327.1| 16S rRNA-processing protein RimM [Bacillus azotoformans LMG 9581]
gi|409926707|gb|EKN63861.1| 16S rRNA-processing protein RimM [Bacillus azotoformans LMG 9581]
Length = 170
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 25/192 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + G++GEI V STDFPE RF ++ + + EVK+ R H
Sbjct: 4 YFNVGKIVNTQGIKGEIRVISSTDFPEERFRKGNILYIE---VAPNDLIEVKVSSHRLH- 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +LTF G + + G L E +L++GEFY +++ V + GE +
Sbjct: 60 -KNFHLLTFAGFNNINDVEKYKGKMLKISEDQLNDLDEGEFYYHEIIDCE-VFTDDGEKL 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GT+ + + GAND+ V + + +P++E++V VD+
Sbjct: 118 GTIKEILSPGANDVWVV-------------------KRPGDKDLLLPYIEDVVKEVDVEN 158
Query: 257 REMQITPPKGLL 268
+++ + +GLL
Sbjct: 159 KKVIVHLMEGLL 170
>gi|226939294|ref|YP_002794365.1| 16S rRNA-processing protein RimM [Laribacter hongkongensis HLHK9]
gi|226714218|gb|ACO73356.1| RimM [Laribacter hongkongensis HLHK9]
Length = 168
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 30/187 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVKLIDGRE 134
D V +GYV G++G + ++ T++ + F P T W+ GRE + +E ++++G+
Sbjct: 5 DLVVMGYVSGAFGVRGWVRIQADTEYADGLFDYP-TWWI-----GREDSWQEYRVVEGKA 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P K + EG+D + A L G + PE D EFY DL+GM V G
Sbjct: 59 QP--KGVVAQLEGVDDRDVACALRGCEVAIPRSALPETGDNEFYWADLIGM-AVSNPAGT 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
G V ++ +GAND+L V +G ++ IPFV+ + VD+
Sbjct: 116 AFGVVDSLMQTGANDVLVVR--------DGKQQ------------TLIPFVKAFILDVDL 155
Query: 255 NGREMQI 261
R + +
Sbjct: 156 QARRLTV 162
>gi|330717907|ref|ZP_08312507.1| 16S rRNA-processing protein RimM [Leuconostoc fallax KCTC 3537]
Length = 169
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ VG + + HG++GE+ V TDF E RF T +++ E I V + R
Sbjct: 1 MEYYKVGTIVNTHGIRGEVKVAAITDFAEQRFQKGNTLFIQ---FNDEKI-PVVIQSTRV 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G ++LTFE + + + S LL R L +G++Y ++G +V+ E
Sbjct: 57 HKGM--YLLTFEAFNNINEVEKYKQSDLLVSAEQRDTLTEGQYYYDQIIGSQVINMAHDE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV + +GAND+ V A + DA +P +++++ VD+
Sbjct: 115 -IGTVKEIMVTGANDVWVV--------------ARDNKKDA-----LLPVIDDVIKAVDI 154
Query: 255 NGREMQITPPKGLLE 269
+ + I +GLL+
Sbjct: 155 ENQIITIDEMEGLLD 169
>gi|169827101|ref|YP_001697259.1| 16S rRNA-processing protein [Lysinibacillus sphaericus C3-41]
gi|209573567|sp|B1HQI2.1|RIMM_LYSSC RecName: Full=Ribosome maturation factor RimM
gi|168991589|gb|ACA39129.1| Probable 16S rRNA-processing protein [Lysinibacillus sphaericus
C3-41]
Length = 171
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 103/197 (52%), Gaps = 29/197 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + +TDF + RF ++ + T ++ + R
Sbjct: 1 MEWFNVGRIVNTHGIRGEVRILSTTDFEKERFAVGNKLAAFKKDDKKPTGVTIQSV--RR 58
Query: 135 HPGQKSWI-LTFEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE 191
H K++I LTFEG++ + P L + + LE+ EF+ +++G VV +E
Sbjct: 59 H---KNFILLTFEGMNNINLVEPFKEGLLKVTKDQMTDDLLEENEFFFHEIIGCTVVSEE 115
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
GE +G V ++ +GAND V V++GS++ +IP++E+IV
Sbjct: 116 -GETIGVVNDILQTGAND---------VWVVKGSKKEH-----------YIPYIEDIVKD 154
Query: 252 VDMNGREMQITPPKGLL 268
+D++ +++ I +GLL
Sbjct: 155 IDVDEKKIVIHVMEGLL 171
>gi|146281576|ref|YP_001171729.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri A1501]
gi|166226469|sp|A4VIT6.1|RIMM_PSEU5 RecName: Full=Ribosome maturation factor RimM
gi|145569781|gb|ABP78887.1| 16S rRNA processing protein [Pseudomonas stutzeri A1501]
Length = 178
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 29/194 (14%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIREV 127
SA + V +G + SVHG++G++ V FT P L R+ L R + +++V
Sbjct: 5 SAPSDELVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLDYRRWTLRRGDEVKQV 56
Query: 128 KLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
+L+ GR K + + +G+ E AR + + P L+DGE+Y L G++
Sbjct: 57 ELVKGRLQ--GKILVASLKGLTDREVARTYADFEICVPRSELPALDDGEYYWYQLQGLK- 113
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
V+ + G+L+G V ++ +GAND+L V + + + D RL +P+ +
Sbjct: 114 VLNQAGQLLGQVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTDH 158
Query: 248 IVPIVDMNGREMQI 261
V VD++ EMQ+
Sbjct: 159 CVLKVDLDSGEMQV 172
>gi|375291191|ref|YP_005125731.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae 241]
gi|376246024|ref|YP_005136263.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC01]
gi|371580862|gb|AEX44529.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae 241]
gi|372108654|gb|AEX74715.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC01]
Length = 166
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E+ L Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKELFLTIASVRTHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|402818510|ref|ZP_10868093.1| ribosome maturation factor RimM [Paenibacillus alvei DSM 29]
gi|402503976|gb|EJW14508.1| ribosome maturation factor RimM [Paenibacillus alvei DSM 29]
Length = 172
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 24/190 (12%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HG++GE+ + P+TDFPE RF L+Q ++ V + R +
Sbjct: 7 NVGKLVNTHGIRGEVKIIPTTDFPETRFAQKSELILQQP----DSNINVPVTIERSRLHK 62
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+I+ F D + G L E EL+D E+Y +++G +VV E GE +G
Sbjct: 63 NMYIVKFTQFDNINDVEKYKGWVLKVSEEQLDELDDDEYYYHEIIGCKVVTDE-GEELGV 121
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ + + GAND+ V A G+ + +P ++++V V++ +
Sbjct: 122 IEEILSPGANDVWVV-------------------KPAKGKSILLPVIDDVVLEVNVQEKI 162
Query: 259 MQITPPKGLL 268
+++ +GL+
Sbjct: 163 VKVHIMEGLI 172
>gi|213691294|ref|YP_002321880.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384198409|ref|YP_005584152.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213522755|gb|ACJ51502.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320457361|dbj|BAJ67982.1| putative 16S rRNA-processing protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 204
Score = 69.7 bits (169), Expect = 5e-09, Method: Composition-based stats.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF P + Q +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFE-PDSVLYSQDGEAEYIV 61
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+ R WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 62 EGSRTFKDR-------WILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VVNV +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVEE+VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEELVPDIDLEEQYLTLDPPGGLI 201
>gi|408500569|ref|YP_006864488.1| 16S rRNA-processing protein rimM [Bifidobacterium asteroides
PRL2011]
gi|408465393|gb|AFU70922.1| 16S rRNA-processing protein rimM [Bifidobacterium asteroides
PRL2011]
Length = 201
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 35/192 (18%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLR--QQVLGRETIREVKLIDGREHPGQKSWILT 144
GL+GE++V TD PE RF PGTR +QV + R K + WI+
Sbjct: 31 QGLKGEVNVYAYTDEPERRFA-PGTRLQTKDEQVFTVVSSRRFK----------QRWIIL 79
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPEL-EDGEFYTRDLVGMRVVM-------KETGELV 196
F+G++ + L G L + EL ++ +Y DL+G+ V M + +G +V
Sbjct: 80 FKGVEDRNASEALNGLELYVQADPAEELAQEDAWYPEDLIGLEVRMAPGNSLGEPSGRVV 139
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +V + A L + + E EEA IPFVE +VP VD+
Sbjct: 140 GQVSDVLDGVAQQQLQI----RMTTKESDEEAEG----------LIPFVEALVPRVDIEN 185
Query: 257 REMQITPPKGLL 268
+ I PP GLL
Sbjct: 186 GYVAIDPPGGLL 197
>gi|398782185|ref|ZP_10546003.1| 16S rRNA-processing protein RimM [Streptomyces auratus AGR0001]
gi|396996922|gb|EJJ07901.1| 16S rRNA-processing protein RimM [Streptomyces auratus AGR0001]
Length = 176
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 34/187 (18%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE--TIREVKLIDGREHPGQKSWILT 144
HG++GE++V+ TD PELR PG VL E ++ + + GR H G+ +L
Sbjct: 8 HGIKGEVTVEVRTDEPELRLG-PGA------VLATEPSSVGPLTITAGRVHSGR--LLLR 58
Query: 145 FEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNV 202
FEG+ A L + L+A D PE + EFY L+ + VV ++ G VG + V
Sbjct: 59 FEGVADRTAAEALRNTLLIAEVDPEDVPE-DPEEFYDHQLIDLDVVTRD-GTAVGRISEV 116
Query: 203 FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQIT 262
+ DLL V +GSE V IPFV EIVP +D++ + I
Sbjct: 117 SHLPYQDLL------IVRRPDGSE-------------VMIPFVAEIVPEIDLDEQRAVID 157
Query: 263 PPKGLLE 269
PP GLL+
Sbjct: 158 PPPGLLD 164
>gi|226945996|ref|YP_002801069.1| 16S rRNA-processing protein RimM [Azotobacter vinelandii DJ]
gi|259585642|sp|C1DDY6.1|RIMM_AZOVD RecName: Full=Ribosome maturation factor RimM
gi|226720923|gb|ACO80094.1| 16S rRNA processing protein RimM [Azotobacter vinelandii DJ]
Length = 178
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 33/197 (16%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTD----FPELRFTTPGTRWLRQQVLGRETIR 125
T AS + +G + SVHG++GE+ V TD + RF T LR+ G E R
Sbjct: 4 TPASADGLIVLGKITSVHGVRGEVKVYSFTDPIDNLLDYRFWT-----LRR---GDER-R 54
Query: 126 EVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
+++L+ GR P + + +GI+ + AR L + P L++GEFY L G+
Sbjct: 55 QIELVRGR--PQGRLLVARLKGIEDRDGARALADFEVCVPIAQLPRLDEGEFYWHQLEGL 112
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPF 244
RVV +E G L G V ++ +GAND+L V C S+ D RL +P+
Sbjct: 113 RVVDRE-GRLFGKVDHLLETGANDVLVVRPCTGSL--------------DDRERL--LPY 155
Query: 245 VEEIVPIVDMNGREMQI 261
++ V VD+ E+++
Sbjct: 156 TDQCVLRVDLAAGEIRV 172
>gi|436840517|ref|YP_007324895.1| Ribosome maturation factor rimM [Desulfovibrio hydrothermalis AM13
= DSM 14728]
gi|432169423|emb|CCO22791.1| Ribosome maturation factor rimM [Desulfovibrio hydrothermalis AM13
= DSM 14728]
Length = 178
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 28/199 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQ-QVLGRETIREVKLIDGREHPGQ 138
V V HGL+GE+ + D P L P ++ Q R +R R+H G+
Sbjct: 6 VAEVVKSHGLRGEVCIDSHADSPFLFSEVPCLYLAKKGQKPRRFVVRST-----RKHKGR 60
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+GID +QA L G ++ REGD P + + + +L G+ V + E G +VGT
Sbjct: 61 --MLIIFDGIDDRDQADSLRGMEVMIREGDLPRSSEEDVFMYELEGLSVEL-EDGAVVGT 117
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
+ + + + VI SE G+ + P VEE V VD+ ++
Sbjct: 118 ISDFIMAPGQETW---------VITSSE----------GKEILFPAVEEFVLSVDLESQK 158
Query: 259 MQITPPKGLLELNLRTDER 277
+ I PP+GL++L L+ +++
Sbjct: 159 VVIDPPEGLIDLYLKKNDK 177
>gi|406865370|gb|EKD18412.1| UDP-N-acetylglucosamine pyrophosphorylase [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 512
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 48/234 (20%)
Query: 474 EKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFS 533
EK F +ND+F + + + E+ LP +S N KIL++S + AP G+GG++
Sbjct: 204 EKYFQENDYFGLEKENIVIFEQGVLPCIS------NDGKILLESKGKVAVAPDGNGGIYQ 257
Query: 534 LLSSHNIIKNLDELGVEYIQ-ICTANPRNAIGNSMFLGFVKSCGADIGFQI--------- 583
L + N++ ++ + G+E+I C N + + +F+GF S DI ++
Sbjct: 258 ALVTSNVMSDMRKRGIEHIHAYCVDNCLVKVADPVFIGFAASKDVDIATKVVRKRNATES 317
Query: 584 ----------------SEYAKHSEERFNTMLSMNVMK----KLTNHINKLEFYAT----- 618
SE K + E + +V+K + NH F +
Sbjct: 318 VGLILLKNGKPDVVEYSEIDKETAEAKDAK-QPDVLKFRAANIVNHYYSFRFLESIPEWA 376
Query: 619 PKLNSHVEKVDKEFID------VIPAAPNSYELRSSIYSCLNACSLDKVCVMEI 666
KL HV + ++D + P PN +L ++ C L++ ME+
Sbjct: 377 HKLPHHVARKKIPYVDTDKGTTIKPEKPNGIKLEQFVFDCFPLLKLEQFACMEV 430
>gi|407781870|ref|ZP_11129086.1| 16S rRNA processing protein RimM [Oceanibaculum indicum P24]
gi|407206909|gb|EKE76853.1| 16S rRNA processing protein RimM [Oceanibaculum indicum P24]
Length = 201
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 68 VETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRF---TTPGTRWLRQQVLGRE-T 123
V+ A+G V +G V HG++G++ V+ T P F T G R R GR T
Sbjct: 15 VDDGAAG-HLVLLGVVVGAHGIRGQLRVRSFTGEPAAIFGYGTLTGKR--RDSDAGRSLT 71
Query: 124 IREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLV 183
++ P K + + G+ A L G L P LE+ EFY DL+
Sbjct: 72 LKPAG------QPKGKVVLASMSGVADRNAAEALKGLRLYVSRDALPALEEDEFYHADLI 125
Query: 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
G+ V + G+ +GTV V + GA D+L V+ EE S V++P
Sbjct: 126 GLGV-DQVAGDRLGTVKAVHDFGAGDVLEVI----------REEGGS---------VFLP 165
Query: 244 FVEEIVPIVDMNGREMQITPPKGLLE 269
F +VP+VD+ G + PP LLE
Sbjct: 166 FTRAVVPVVDIAGGRLVADPPAELLE 191
>gi|194014273|ref|ZP_03052890.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
gi|194013299|gb|EDW22864.1| 16S rRNA processing protein RimM [Bacillus pumilus ATCC 7061]
Length = 174
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + HG++GE+ V TDFPE R+ ++ +Q G+ +V + R+H
Sbjct: 4 EWLNVGKIVNTHGVRGEVRVVSKTDFPEERYKKGSVLYIFKQ--GQGEPLKVTVASHRQH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +LTFE I ++ +A L S L + L++GEFY ++G V E +L
Sbjct: 62 --KQFDLLTFEEISSLNEAELLKESILKVEKEHLGSLDEGEFYFHQIIGCE-VYDEEDQL 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + + GAND+ V DA IP++ +V +D+
Sbjct: 119 VGQIKEILTPGANDVWVV--------------GRKGKKDA-----LIPYIPSVVKKIDIA 159
Query: 256 GREMQITPPKGLLE 269
+ + I +GL++
Sbjct: 160 SKTIHIEVMEGLID 173
>gi|119505222|ref|ZP_01627297.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2080]
gi|119458913|gb|EAW40013.1| 16S rRNA processing protein RimM [marine gamma proteobacterium
HTCC2080]
Length = 180
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 83 VYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWI 142
V HG++G + ++P + P G + + R VK+ + R P + W+
Sbjct: 10 VLGAHGIKGWLKIRPLVEDPTFLEGLEGLVLASGPKMRQADSRGVKVTNLR--PQGRGWV 67
Query: 143 LTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK--ETGELVGTVV 200
+ G+D QA L G L P+LEDG+FY RDL G+RV + E L+G +
Sbjct: 68 IQVSGVDDRTQAEALRGMVLRGSAALLPDLEDGDFYWRDLEGLRVWCEAPEGLCLLGEID 127
Query: 201 NVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV-WIPFVEEIVPIVDMNGREM 259
++ +GAND+L V EGS D RL+ W+ V+E+V VDM+ +
Sbjct: 128 HLLETGANDVL------VVRPCEGS-------MDDKERLIPWL--VDEVVHSVDMDAGTV 172
Query: 260 QI 261
++
Sbjct: 173 RV 174
>gi|348590007|ref|YP_004874469.1| 16S rRNA processing protein RimM [Taylorella asinigenitalis MCE3]
gi|347973911|gb|AEP36446.1| 16S rRNA processing protein RimM [Taylorella asinigenitalis MCE3]
Length = 205
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTR---WLRQQVLGRE-TIREVKLID 131
D V VG + +G++G++ + FP + T + W Q+ E I +K I+
Sbjct: 18 DLVIVGRISDANGVRGKVKI-----FPHSKENTQLVKIKNWYLQKFDEDEHPITPIKSIN 72
Query: 132 GREHPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
+ S I+ +FEGI +QA L G ++LA + P + EFY DL+G V
Sbjct: 73 VLQKTLIGSHIVASFEGITDRDQALLLKGYSILASRSEFPLPDSDEFYWIDLIGCFVYSN 132
Query: 191 ETGE--LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRL--VWIPFVE 246
+ E L+G V N+ SGA+ LLH+ SE+ S ++ GR + IPFV+
Sbjct: 133 NSSEPSLIGIVKNLSESGAHTLLHIYQIH-------SEDDLSPRLNSKGRPIEILIPFVK 185
Query: 247 EIVPIVDMNGREM 259
+IVP+VD+ +++
Sbjct: 186 DIVPVVDIKNKKI 198
>gi|383456469|ref|YP_005370458.1| 16S rRNA processing protein RimM [Corallococcus coralloides DSM
2259]
gi|380734148|gb|AFE10150.1| 16S rRNA processing protein RimM [Corallococcus coralloides DSM
2259]
Length = 182
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 30/192 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+++GYV HGL+GE++VK E T R LR + G E RE L R P
Sbjct: 7 LELGYVARAHGLRGEVAVKSFDPASETLGTVERVR-LRLRS-GEE--REYALETFR--PA 60
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K ++ FEG+++ A LVG+ + D E+GEF+ DLVG+ V E G +G
Sbjct: 61 NKEDLVCFEGVESRTAAEALVGAKVFVYREDLEPPEEGEFFQGDLVGLNAV-DEQGASLG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR--LVWIPFVEEIVPIVDMN 255
TV V+ +G E + A GR LV +PF +E VP VD+
Sbjct: 120 TVEEVWATG--------------------EVPNLVIRAKGRPELV-VPFADEFVPTVDVP 158
Query: 256 GREMQITPPKGL 267
+ I PP+ L
Sbjct: 159 AGRIVIRPPEYL 170
>gi|393201745|ref|YP_006463587.1| RimM protein required for 16S rRNA processing [Solibacillus
silvestris StLB046]
gi|327441076|dbj|BAK17441.1| RimM protein required for 16S rRNA processing [Solibacillus
silvestris StLB046]
Length = 173
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + +TDF E RF ++ + T V + R
Sbjct: 1 MEWFNVGRIVNTHGIRGELRILSTTDFEEERFAVGSKLAAFKKDDKKPTW--VTISSSRR 58
Query: 135 HPGQKSWIL-TFEGIDTVEQARPLVGSTLLAREGDR---PELEDGEFYTRDLVGMRVVMK 190
H K++IL TFEG++ + P LL D+ ELED E+Y ++ V
Sbjct: 59 H---KNFILVTFEGMENINLVEPF-KEGLLKVSMDQLAEDELEDNEYYHFEIKDCE-VFS 113
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
E GEL+G V ++ +GAND+ V +G+ +IP++E+IV
Sbjct: 114 EEGELIGVVTDILETGANDVWEVKA-------------------QNGKKHYIPYIEDIVK 154
Query: 251 IVDMNGREMQITPPKGLLE 269
++++ +++ I +GLLE
Sbjct: 155 DINVDEKKIIIHVMEGLLE 173
>gi|104783232|ref|YP_609730.1| 16S rRNA-processing protein RimM [Pseudomonas entomophila L48]
gi|122402143|sp|Q1I5Y9.1|RIMM_PSEE4 RecName: Full=Ribosome maturation factor RimM
gi|95112219|emb|CAK16946.1| 16S rRNA processing protein [Pseudomonas entomophila L48]
Length = 178
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE----GKVKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y LVG++V+ ++
Sbjct: 63 -GSQKGLVVKLKGLDDRDEARLLSGHEICISRSLLPNLATDEYYWYQLVGLKVINQDE-H 120
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G + ++ +GAND+L V + + + D RL +P+ + V VD+
Sbjct: 121 LFGKIDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTGQCVLAVDL 165
Query: 255 NGREMQI 261
M++
Sbjct: 166 EAGVMRV 172
>gi|126724933|ref|ZP_01740776.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium
HTCC2150]
gi|126706097|gb|EBA05187.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium
HTCC2150]
Length = 102
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 19/121 (15%)
Query: 148 IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGA 207
++T EQA L G L A P+L D E+Y DL+GM +V+ G+ +G V +V N GA
Sbjct: 1 MNTKEQADALKGVRLYAPREALPDLPDEEYYHADLIGM-IVLDTGGKELGKVSDVMNHGA 59
Query: 208 NDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 267
+DLL V + +G+ IPF EIVP VDM + I PP+GL
Sbjct: 60 DDLLEV---RGKGIKDGA---------------LIPFTREIVPTVDMASGRIIIDPPEGL 101
Query: 268 L 268
L
Sbjct: 102 L 102
>gi|83855064|ref|ZP_00948594.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83941588|ref|ZP_00954050.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
gi|83842907|gb|EAP82074.1| 16S rRNA processing protein RimM [Sulfitobacter sp. NAS-14.1]
gi|83847408|gb|EAP85283.1| 16S rRNA processing protein RimM [Sulfitobacter sp. EE-36]
Length = 173
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + +G++GE+ +K PE + +P + + R L R
Sbjct: 3 DKISVGAISGAYGVRGELRIKSYCAVPEDIESYSP--------LSSEDGTRSFNLALVR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P + ++ + + E+A L G+ L A+ P L D EFY DL+G+ V G
Sbjct: 54 -PVKNGFVARITDVTSKEEADALRGTVLFAQRDQLPSLPDDEFYHTDLIGLE-VYDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V V N GA+DLL S + V++PF + VP VD+
Sbjct: 112 LIGKVKTVQNHGADDLLETQL------------------AGSAQTVFLPFTKAAVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
+ PP+G+L
Sbjct: 154 ATGRIIADPPEGIL 167
>gi|375293392|ref|YP_005127931.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae INCA
402]
gi|376243124|ref|YP_005133976.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae CDCE
8392]
gi|376293524|ref|YP_005165198.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC02]
gi|371583063|gb|AEX46729.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae INCA
402]
gi|372106366|gb|AEX72428.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae CDCE
8392]
gi|372110847|gb|AEX76907.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC02]
Length = 166
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE+ ++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVVIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|260432698|ref|ZP_05786669.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416526|gb|EEX09785.1| 16S rRNA processing protein RimM [Silicibacter lacuscaerulensis
ITI-1157]
Length = 167
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG V +G++GE+ +K PE + +P T + R +K
Sbjct: 3 DLICVGSVAGSYGVRGEVRLKSYCAVPEDIETYSPLTDESGTERYPLIITRAIK------ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G++T EQA L G L AR P L D EFY DL+G+ V G
Sbjct: 57 ----NGFAARLGGVETKEQADALKGLRLYARRAQLPSLPDDEFYHADLIGLE-VYDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V +V N GA+DLL + G ++ V +PF + VP VD+
Sbjct: 112 LLGKVKSVQNHGADDLLE---------LHGPGLKTT---------VLLPFTKAAVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
+ PP GLL
Sbjct: 154 EAGRIVADPPDGLL 167
>gi|254821201|ref|ZP_05226202.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare ATCC
13950]
Length = 171
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 26/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P+ RF T + G E R+ + REH G+
Sbjct: 5 VGRVVKAHGIGGEIVVEIRTDDPDARFATGNALRGKASRGGGE--RDFVVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ GI + A L G+ + D P +++ + +Y +L G+ V TG VG
Sbjct: 62 -LLVRLAGISDRDAADALRGTLFVVDSDDLPPIDEADTYYDHELEGLH-VRTITGRDVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V SG + +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELLAV-------------------RRESGEAL-VPFVTAIVTSVSLDDGT 159
Query: 259 MQITPPKGLLEL 270
++I PP+GLL+L
Sbjct: 160 IEIDPPEGLLDL 171
>gi|259503523|ref|ZP_05746425.1| 16S rRNA processing protein RimM [Lactobacillus antri DSM 16041]
gi|259168601|gb|EEW53096.1| 16S rRNA processing protein RimM [Lactobacillus antri DSM 16041]
Length = 168
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F +VG + + HG++GE+ V P+TDF + RF P + Q+ G E+ + R+
Sbjct: 1 MQFYNVGKIVNTHGIRGEVRVLPTTDFVKERF-APQQKLYLQEADGP---LELTVEGARQ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G ++ F G D + G L+ D+ LEDG++Y ++G+ V GE
Sbjct: 57 HKG--FILVKFAGYDNINAVEGFRGHELMVSAADQQPLEDGQYYYHQIIGL-AVKTVAGE 113
Query: 195 LVGTVVNVFNSGANDL 210
+G + + GAND+
Sbjct: 114 ELGRIKEILAPGANDV 129
>gi|357038754|ref|ZP_09100551.1| Ribosome maturation factor rimM [Desulfotomaculum gibsoniae DSM
7213]
gi|355359546|gb|EHG07308.1| Ribosome maturation factor rimM [Desulfotomaculum gibsoniae DSM
7213]
Length = 187
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 27/195 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + G +GE+ V P TDFP+ RF+T + G+ + V+ + +
Sbjct: 20 YITIGKIVNTQGHRGEVRVIPLTDFPQ-RFSTMNKVHVGHN--GKTDLMNVE----KTYQ 72
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+K I+ F GI+ + A L G+ LL + L + FY D+VGM V E G +
Sbjct: 73 HKKFIIIKFMGIEDMNTAETLKGAHLLIPRDELMPLPEDSFYIFDIVGME-VFTEDGRFL 131
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +V +GAND+ ++EG + R + +P ++++V VDM
Sbjct: 132 GQVRDVLQTGANDVF---------IVEGVVK----------RPLLLPALKKVVRNVDMVH 172
Query: 257 REMQITPPKGLLELN 271
++M + +GL EL+
Sbjct: 173 KKMIVCLLEGLEELS 187
>gi|171778252|ref|ZP_02919458.1| hypothetical protein STRINF_00300 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282952|gb|EDT48376.1| 16S rRNA processing protein RimM [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 182
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 67 IVETSASG--LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
+V+T SG +++ +VG + + GLQGE+ V TDF E RF G++ + +
Sbjct: 1 MVKTKLSGVNMNYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKK-GSKL----AIFDDKD 55
Query: 125 REVKLIDGREHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLV 183
R + ++ H QK++ I+ F+G+ + G TL E + ELEDGEFY +++
Sbjct: 56 RFIIEVEIASHRKQKNFDIIKFKGMYHINDIEKYKGCTLKVAEENLSELEDGEFYYHEII 115
Query: 184 GMRVVMKETGELVGTVVNVFNSGANDL 210
G+ V E LVG V + GAND+
Sbjct: 116 GLDVY--ENDVLVGQVKEILQPGANDV 140
>gi|56964055|ref|YP_175786.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
gi|56910298|dbj|BAD64825.1| 16S rRNA processing protein [Bacillus clausii KSM-K16]
Length = 190
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + + HG++GE+ V +TDFPE R+ L+ + + E L+ R H
Sbjct: 20 NWYNVGRLVNTHGVRGEVRVLSNTDFPEERYANGSV--LK---VAKSPQAEGTLVTVRSH 74
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K++ +LTFEG +++ + GS L E EL++ E+Y +++G VV E G
Sbjct: 75 RTHKNFDLLTFEGYNSINEVECFKGSYLYVSEDQLSELDEHEYYYHEIIGCTVV-DEEGT 133
Query: 195 LVGTVVNVFNSGANDL 210
+G + ++ +GAND+
Sbjct: 134 KLGKIKDIIETGANDV 149
>gi|376254609|ref|YP_005143068.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae PW8]
gi|376290723|ref|YP_005162970.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae C7
(beta)]
gi|372104119|gb|AEX67716.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae C7
(beta)]
gi|372117693|gb|AEX70163.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae PW8]
Length = 166
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGMRFFA--APLDDDDDDGFYDHELEGLAVIYGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDSGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|296330817|ref|ZP_06873292.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674335|ref|YP_003866007.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151822|gb|EFG92696.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412579|gb|ADM37698.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 174
Score = 69.3 bits (168), Expect = 7e-09, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF E R+ T +L G EV + R H
Sbjct: 5 WFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMD--GSNEPVEVTVNTHRLH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L F+ ++ + L + + E D EL +GEFY +++G V E GEL+
Sbjct: 62 -KQFHLLQFKERQSLNEVEKLKNAIIKVPEEDLGELNEGEFYFHEIIGCE-VFTEDGELI 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V + GAND+ + DA IP++E +V +D++
Sbjct: 120 GKVKEILTPGANDVWVI--------------GRKGKKDA-----LIPYIESVVKYIDVSE 160
Query: 257 REMQITPPKGLLE 269
++++I +GL++
Sbjct: 161 KKIEIELMEGLID 173
>gi|424776111|ref|ZP_18203096.1| 16S rRNA-processing protein RimM [Alcaligenes sp. HPC1271]
gi|422888571|gb|EKU30957.1| 16S rRNA-processing protein RimM [Alcaligenes sp. HPC1271]
Length = 199
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 21/204 (10%)
Query: 68 VETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQ-------VLG 120
++ SA D V++G + S +G++G + ++P + T WL+ V
Sbjct: 1 MKQSAIPADLVELGRIVSAYGVRGWVKIQPHS-MQTKALLNAKTWWLKTPRPESQAGVFA 59
Query: 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTR 180
+ R+++ ++H + + FEG+D E A+ L G T+ P+ ++ EFY
Sbjct: 60 SVSPRQIQ--TAKQHGA--TIVAQFEGLDNRELAQALKGHTVWVSRAAFPKADEDEFYWV 115
Query: 181 DLVGMRVVMKETG--ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR 238
DL+G R ++ G E +G VV V ++GA+ +L V +E + D GR
Sbjct: 116 DLIGCRFFGEQDGQAESLGEVVEVLDNGAHAILVVH-----RGFWDAEGVFTPVKDEQGR 170
Query: 239 LV--WIPFVEEIVPIVDMNGREMQ 260
+ +PFV+ IV VDM+ RE+
Sbjct: 171 PLEELVPFVQAIVHTVDMSARELH 194
>gi|312869889|ref|ZP_07730028.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
gi|417886254|ref|ZP_12530401.1| 16S rRNA processing protein RimM [Lactobacillus oris F0423]
gi|311094474|gb|EFQ52779.1| 16S rRNA processing protein RimM [Lactobacillus oris PB013-T2-3]
gi|341593752|gb|EGS36577.1| 16S rRNA processing protein RimM [Lactobacillus oris F0423]
Length = 168
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ F +VG + + HG++GE+ V P+TDF + RF +L+ G E+ + R+
Sbjct: 1 MQFYNVGKIVNTHGIRGEVRVLPTTDFVDERFAPQQKLYLQ----GTGAPVELTIERSRQ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G ++ F G D + L+ D+ LEDG++Y ++G+ V GE
Sbjct: 57 HKG--FILVKFVGYDNINDVESFRNHELMVSAADQQPLEDGQYYYHQIIGL-TVKTVAGE 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V + GAND V V+E +A + +P ++++V VD+
Sbjct: 114 ELGKVKEILAPGAND---------VWVVERPGKAD----------LLLPVIDDVVKQVDL 154
Query: 255 NGREMQITPPKGL 267
+ ++ + +GL
Sbjct: 155 DNGQVLVELMEGL 167
>gi|153854840|ref|ZP_01996063.1| hypothetical protein DORLON_02068 [Dorea longicatena DSM 13814]
gi|149752542|gb|EDM62473.1| 16S rRNA processing protein RimM [Dorea longicatena DSM 13814]
Length = 187
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ + VG + S HG++GE+ V P+TD P RF + L+ +L +T RE K ++ +
Sbjct: 22 ELLQVGVITSTHGVRGEVKVFPTTDDPN-RFKS-----LKHVLL--DTGREKKSLEVQGV 73
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
K + IL F+GID + LL D ELE+ E++ D++G+ VV E +
Sbjct: 74 KFFKQFVILKFKGIDNINDIERYKRCPLLVERKDAVELEEDEYFIADMIGIEVV-TEDDK 132
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
GT+ +V +GAND V VI+ E V +P + E + VD+
Sbjct: 133 PFGTLKDVMETGAND---------VYVIDTDEHGE----------VLVPAIRECILDVDI 173
Query: 255 NGREMQITPPKGLL 268
++M+I GL+
Sbjct: 174 ENQKMKIHLMDGLI 187
>gi|376285026|ref|YP_005158236.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae 31A]
gi|376288039|ref|YP_005160605.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae BH8]
gi|371578541|gb|AEX42209.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae 31A]
gi|371585373|gb|AEX49038.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae BH8]
Length = 166
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ P++RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPKIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G+ A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGTRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDAGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|376251609|ref|YP_005138490.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC03]
gi|372113113|gb|AEX79172.1| 16S rRNA-processing protein RimM [Corynebacterium diphtheriae HC03]
Length = 166
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRETIREVKLIDGREHPGQ 138
+G V HG++GE++++ +T+ PE+RF + +VL GR+ +E L P Q
Sbjct: 5 IGRVVKSHGIRGEVAIEVTTEEPEIRFA-------QGEVLNGRQGGKEHSLTIASVRPHQ 57
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
++ F+ I A L G A + +D FY +L G+ V+ E E +G
Sbjct: 58 NRLLVKFKEIADRTAADSLRGMRFFA--APLDDDDDDGFYDHELEGLAVIHGE--EKIGE 113
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V + A LL V SG+ V IPFV +IVP VD++
Sbjct: 114 VSGVIHGPAQSLLEVTL-------------------ESGKEVLIPFVHDIVPEVDLDSGT 154
Query: 259 MQITPPKGLLEL 270
ITPP+GLLEL
Sbjct: 155 CVITPPEGLLEL 166
>gi|350265914|ref|YP_004877221.1| 16S rRNA-processing protein RimM [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598801|gb|AEP86589.1| 16S rRNA processing protein RimM [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 174
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF E R+ T +L GR EV + R H
Sbjct: 5 WFNVGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFMD--GRNEPVEVTVNTHRLH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L F+ + + L + + E D EL +GEFY +++G V E GEL+
Sbjct: 62 -KQFHLLQFKERQGLNEVEELKNAIIKVPEEDLGELNEGEFYFHEIIGCE-VFTEGGELI 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + + GAND+ + DA IP++E +V +D++
Sbjct: 120 GKIKEILTPGANDVWVI--------------GRKGKKDA-----LIPYIESVVKHIDVSE 160
Query: 257 REMQITPPKGLLE 269
++++I +GL++
Sbjct: 161 KKIEIELMEGLID 173
>gi|89069752|ref|ZP_01157088.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
gi|89044698|gb|EAR50809.1| putative 16S rRNA processing protein [Oceanicola granulosus
HTCC2516]
Length = 175
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 63/203 (31%), Positives = 85/203 (41%), Gaps = 38/203 (18%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVK-----PSTDFPELRFTTPGTRWLRQQVLGRETIR 125
S G V VG + G++GE+ +K P+ T R + Q V+ ET
Sbjct: 2 SGDGDSRVVVGSIAGAFGVRGEVRLKSYCADPAAIADYTPLHTEDGRTIAQVVITGET-- 59
Query: 126 EVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
+ + I +GI T EQA L G+ L A P L D EFY DL+G+
Sbjct: 60 ------------KGALIARLDGIATKEQADALRGTALHAARDRLPSLPDDEFYHADLLGL 107
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
V G ++GTV V + GA DLL V G S+ V +PF
Sbjct: 108 P-VYDGGGTMLGTVKAVHDHGAGDLLEV---------HGPGLKST---------VLLPFT 148
Query: 246 EEIVPIVDMNGREMQITPPKGLL 268
EIVP VD+ + PP+GL
Sbjct: 149 REIVPTVDLAAGRIVADPPEGLF 171
>gi|422846775|ref|ZP_16893458.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK72]
gi|325687583|gb|EGD29604.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK72]
Length = 172
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKEQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDVLLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|422862410|ref|ZP_16909042.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK408]
gi|327474393|gb|EGF19799.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK408]
Length = 172
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G++V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLKVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDILLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|359771845|ref|ZP_09275287.1| ribosome maturation factor RimM [Gordonia effusa NBRC 100432]
gi|359310959|dbj|GAB18065.1| ribosome maturation factor RimM [Gordonia effusa NBRC 100432]
Length = 173
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 67/199 (33%), Positives = 94/199 (47%), Gaps = 36/199 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD P+ RF PGT+ LR + + + R
Sbjct: 1 MDLV-VGRVVKSHGIRGEMVVDVRTDDPDTRF-APGTK-LRGRAPRGGGEQTYTVTAARN 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLL-----AREGDRPELEDGEFYTRDLVGMRVVM 189
H G+ +L+ I + A + G L GD P+ EFY +L G+ VV
Sbjct: 58 HSGR--LLLSLNEIADRDSADAMRGVLFLIDTTDVSSGDDPD----EFYDHELEGVDVVT 111
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G VG V +V + GA+DLL V A+D GR + IPFV EIV
Sbjct: 112 VD-GANVGAVESVLHLGASDLLSV-----------------RATD--GREILIPFVAEIV 151
Query: 250 PIVDMNGREMQITPPKGLL 268
P +++ + I PP GLL
Sbjct: 152 P--EVSTARIVIDPPDGLL 168
>gi|347755575|ref|YP_004863139.1| 16S rRNA processing protein RimM [Candidatus Chloracidobacterium
thermophilum B]
gi|347588093|gb|AEP12623.1| 16S rRNA processing protein RimM [Candidatus Chloracidobacterium
thermophilum B]
Length = 180
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ V + + GL+GE+ +D+PE RF WLR R T R + H
Sbjct: 10 ELVTIAAIRRPRGLRGEVVATSLSDYPE-RFAPGVPVWLRPP---RGTARAAVIERAWFH 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
G + IL F G+D + L G + R EF+ DL+G RV + E+GE+
Sbjct: 66 KG--NVILKFVGLDHINAVESLAGHQVCVPLSARVIPPPDEFFQDDLIGCRVEL-ESGEV 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV+V G L V+E D + +PFV I VD+
Sbjct: 123 VGTVVDVAPYGGGTL----------VVE------RIHPDGRRQECLVPFVRAICTSVDVV 166
Query: 256 GREMQITPPKGLLE 269
+ ++I+PP+GLL+
Sbjct: 167 AKWIRISPPEGLLD 180
>gi|347549190|ref|YP_004855518.1| putative 16S rRNA processing protein RimM [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982261|emb|CBW86255.1| Putative 16S rRNA processing protein RimM [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 172
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDF + RF +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFADERFQVGNAVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + TL E +L + E+Y +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKISEKQLTDLAENEYYFHEIIGCSVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++GS++ IP++ ++V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGSDKKEK----------LIPYIADVVKEINISDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|339493176|ref|YP_004713469.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338800548|gb|AEJ04380.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 175
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIREV 127
SA + V +G + SVHG++G++ V FT P L R+ L R + +++V
Sbjct: 2 SAPSDELVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLDYRRWTLRRGDEVKQV 53
Query: 128 KLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
+L+ GR K + + +G+ E AR + + P L+DGE+Y L G++
Sbjct: 54 ELVKGRLQ--GKILVASLKGLTDREVARTYADFEICVPRSELPALDDGEYYWYQLQGLK- 110
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
V+ + G+L+G V ++ +GAND+L V + + + D RL +P+ +
Sbjct: 111 VLNQAGQLLGQVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTDH 155
Query: 248 IVPIVDMNGREMQI 261
V VD+ EMQ+
Sbjct: 156 CVLKVDLESGEMQV 169
>gi|254437096|ref|ZP_05050590.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
gi|198252542|gb|EDY76856.1| 16S rRNA processing protein RimM [Octadecabacter antarcticus 307]
Length = 183
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 64/207 (30%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + G+ G++ +K PE L TP TR Q++ TI +I G+
Sbjct: 6 DRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIM---TI----VIKGQT 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ S I +GI T E+A L G L A+ P L D EFY DLVG+ + G
Sbjct: 59 ---KGSLIARVDGITTKEEADGLRGMDLYAQRDQLPSLPDDEFYHTDLVGL-MTYDTGGA 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V V +GA+DLL ++ S S D V +PF + VP VD+
Sbjct: 115 KLGRVKAVQTNGADDLLEII--------------SPSDKDT----VLVPFTKANVPTVDL 156
Query: 255 NGREMQITPPKGLLELNLRTDERSKKE 281
+ + PP+GL T + S +
Sbjct: 157 ASGRIVVDPPRGLFADEADTQDTSAAD 183
>gi|399517475|ref|ZP_10759025.1| 16S rRNA processing protein RimM [Leuconostoc pseudomesenteroides
4882]
gi|398647599|emb|CCJ67052.1| 16S rRNA processing protein RimM [Leuconostoc pseudomesenteroides
4882]
Length = 173
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F VG + + HG++GE+ + TDF E RF + ++ + GR V + R H
Sbjct: 6 NFFKVGTIVNTHGIRGEVKIMAITDFAEERFQKGASLFIDTK-QGRVP---VTVKSSRLH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +W++ F+G+ + + G + RPEL D E+Y +++ VV +G
Sbjct: 62 --KNAWLVLFDGVSNINEIEKYKGDDVYVEGNSRPELGDDEYYYDEIIDSEVV-DLSGNH 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +GAND+ V E S A IP ++++V ++ +
Sbjct: 119 IGIVKEIMTTGANDVWIV-----------KREGQSDA--------LIPLIDDVVKEINAD 159
Query: 256 GREMQITPPKGLLE 269
+ + I +GLL+
Sbjct: 160 DKLITIDVLEGLLD 173
>gi|311745562|ref|ZP_07719347.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
gi|126578122|gb|EAZ82342.1| 16S rRNA processing protein RimM [Algoriphagus sp. PR1]
Length = 176
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH---- 135
+GYV VHGL+GE+ V TD PE + +L Q+ R V EH
Sbjct: 9 LGYVAKVHGLRGEVVVVLDTDNPE-DYEDLEHLFLEQKS------RLVPFF--LEHFVLQ 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG K + FE D++ QA LVGS + PELED ++Y +L+G V ET L
Sbjct: 60 PGNKV-LAKFEDYDSLNQAEELVGSEVYLPLTALPELEDDQYYFHELIGFE-VFDETIGL 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV V++ DLL V G+ V IP + I+ VD
Sbjct: 118 IGTVQVVYDLETQDLLGVT--------------------HQGKEVLIPIQDGIIQEVDKT 157
Query: 256 GREMQITPPKGLLELNL 272
+++ P+GLLE+ L
Sbjct: 158 AKKVFCHLPEGLLEIYL 174
>gi|399912590|ref|ZP_10780904.1| 16S rRNA-processing protein RimM [Halomonas sp. KM-1]
Length = 191
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V +G + S +G++G + V T + + W+ +Q T+ +L+ GR H
Sbjct: 18 DHVVLGKLTSPYGVKGWLKVYSHTG--PMDGILEYSEWVLRQ---GGTLSRHRLLQGRRH 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K + EG+D+ E A + G+ +L + + P+LE E+Y L G+ VV +E G +
Sbjct: 73 --GKGLVALLEGVDSREAAERVSGAEILLPKTELPQLEGDEYYWHQLEGLTVVTRE-GTV 129
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV-EEIVPIVDM 254
+G V +F +GAND+L V+ G+ + A D RL +PF+ +E++ VD+
Sbjct: 130 LGRVAYLFETGANDVL---------VVRGNPQGEPPAIDDRERL--LPFLPDEVIVEVDL 178
Query: 255 NGREMQI 261
G M +
Sbjct: 179 AGGTMTV 185
>gi|398846251|ref|ZP_10603246.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM84]
gi|398252782|gb|EJN37944.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM84]
Length = 178
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG ++SVHG++GE+ V TD E P RW+ + T+++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWMLRH---EGTVKQVELVSGR-- 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
QK ++ +G+D ++AR L G + P L E+Y L G++V+ ++ L
Sbjct: 63 GSQKGLVVKLKGLDDRDEARLLSGYEICIARSLLPNLAADEYYWYQLQGLKVINQDE-HL 121
Query: 196 VGTVVNVFNSGANDLLHVM-CYSSVN 220
G V ++ +GAND++ V C S++
Sbjct: 122 FGKVDHLLETGANDVMVVKPCAGSLD 147
>gi|384196551|ref|YP_005582295.1| 16S rRNA processing protein RimM [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110442|gb|AEF27458.1| 16S rRNA processing protein RimM [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 204
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPERRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEADDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVEE+VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEELVPDIDLEEQYLTLDPPGGLI 201
>gi|260886931|ref|ZP_05898194.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
gi|260862993|gb|EEX77493.1| 16S rRNA processing protein RimM [Selenomonas sputigena ATCC 35185]
Length = 169
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V +G + HGL+GE+ V P TDFPE RF + LR+ +G E + V+ + H
Sbjct: 6 VVIGKAGAPHGLRGEVRVIPLTDFPE-RFES-----LREVFIG-ERVFHVEHV----HYH 54
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
++ +LT + E A L G L D L +GEFYT D++G+ V+ GE +G
Sbjct: 55 RQFVLLTLAECTSREAAAKLTGELLRVAREDAAPLAEGEFYTFDIIGL-AVLDMAGERLG 113
Query: 198 TVVNVFNSGANDL 210
V NV +G+ND+
Sbjct: 114 EVTNVLKTGSNDV 126
>gi|408827431|ref|ZP_11212321.1| 16S rRNA-processing protein RimM [Streptomyces somaliensis DSM
40738]
Length = 196
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPASAGPLTIES-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+L F G+ A L + L+A +RPE E E+Y L+ + VV+ + G VG
Sbjct: 59 -LLLRFAGVRDRNAAEALRNTLLIAEVDPDERPE-EPDEYYDHQLIDLDVVLAD-GTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ V + DL V+E + G V IPFVEEIV VD+ G+
Sbjct: 116 RITEVSHLPYQDLF---------VVERPD----------GGEVLIPFVEEIVTEVDLEGQ 156
Query: 258 EMQITPPKGLLE 269
I PP GL++
Sbjct: 157 RAVIVPPPGLID 168
>gi|414154254|ref|ZP_11410573.1| Ribosome maturation factor rimM [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411454045|emb|CCO08477.1| Ribosome maturation factor rimM [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 169
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 39/198 (19%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG + + G +GE+ V P+TDFPE RF ++ +L R I
Sbjct: 5 FITVGEIVNTQGHRGEVRVLPATDFPE-RFAVN-----KKLILFLNNQRSCLTI------ 52
Query: 137 GQKSW------ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
+K W IL F I + A L G L + L + +Y ++G++V+ K
Sbjct: 53 -EKVWQHKQFIILKFAEITDMTAAEKLKGGLLQVTPEELMPLPEDRYYIFQIIGLKVIDK 111
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
E GEL G VV V +GAND+ V G+ + IP ++ +V
Sbjct: 112 EVGEL-GQVVQVLQTGANDVYVV-------------------KPPQGKEILIPAIKSVVK 151
Query: 251 IVDMNGREMQITPPKGLL 268
+D++G M++ P+GL+
Sbjct: 152 KIDVSGGRMEVELPEGLI 169
>gi|330839280|ref|YP_004413860.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
gi|329747044|gb|AEC00401.1| Ribosome maturation factor rimM [Selenomonas sputigena ATCC 35185]
Length = 172
Score = 68.9 bits (167), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V +G + HGL+GE+ V P TDFPE RF + LR+ +G E + V+ + H
Sbjct: 9 VVIGKAGAPHGLRGEVRVIPLTDFPE-RFES-----LREVFIG-ERVFHVEHV----HYH 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
++ +LT + E A L G L D L +GEFYT D++G+ V+ GE +G
Sbjct: 58 RQFVLLTLAECTSREAAAKLTGELLRVAREDAAPLAEGEFYTFDIIGL-AVLDMAGERLG 116
Query: 198 TVVNVFNSGANDL 210
V NV +G+ND+
Sbjct: 117 EVTNVLKTGSNDV 129
>gi|379748322|ref|YP_005339143.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare ATCC
13950]
gi|379755610|ref|YP_005344282.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare
MOTT-02]
gi|387876982|ref|YP_006307286.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MOTT36Y]
gi|443306779|ref|ZP_21036566.1| 16S rRNA-processing protein RimM [Mycobacterium sp. H4Y]
gi|378800686|gb|AFC44822.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare ATCC
13950]
gi|378805826|gb|AFC49961.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare
MOTT-02]
gi|386790440|gb|AFJ36559.1| 16S rRNA-processing protein RimM [Mycobacterium sp. MOTT36Y]
gi|442764147|gb|ELR82145.1| 16S rRNA-processing protein RimM [Mycobacterium sp. H4Y]
Length = 171
Score = 68.6 bits (166), Expect = 9e-09, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P+ RF PG LR + R+ + REH G+
Sbjct: 5 VGRVVKAHGIGGEIVVEIRTDDPDARF-APGNT-LRGKASRGGGERDFVVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ GI + A L G+ + D P +++ + +Y +L G+ V TG VG
Sbjct: 62 -LLVRLAGITDRDAADALRGTLFVVDSDDLPPIDEADTYYDHELEGLH-VRTITGHDVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V SG + +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELLAV-------------------RRESGEAL-VPFVTAIVTSVSLDDGT 159
Query: 259 MQITPPKGLLEL 270
++I PP+GLL+L
Sbjct: 160 IEIDPPEGLLDL 171
>gi|118579529|ref|YP_900779.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
gi|118502239|gb|ABK98721.1| 16S rRNA processing protein RimM [Pelobacter propionicus DSM 2379]
Length = 152
Score = 68.6 bits (166), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 23/135 (17%)
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F+G+D ++QA+ LVGS + R PE E+ E+Y DL+G+ V E G
Sbjct: 41 PGK--FLIGFKGVDHIDQAQTLVGSEICLRRDQLPEPEEDEYYWCDLIGLEVATVE-GMA 97
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + +F +G++D + V+ G +GR IP + +++ VD+
Sbjct: 98 LGVLEEIFKAGSSD---------IYVVRG-----------AGREYLIPAIADVIHSVDLE 137
Query: 256 GREMQITPPKGLLEL 270
M ITP +GLL+L
Sbjct: 138 MGRMLITPLEGLLDL 152
>gi|406031864|ref|YP_006730756.1| ribosome maturation factor rimM [Mycobacterium indicus pranii MTCC
9506]
gi|405130411|gb|AFS15666.1| Ribosome maturation factor rimM [Mycobacterium indicus pranii MTCC
9506]
Length = 171
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 26/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P+ RF T + G E R+ + REH G+
Sbjct: 5 VGRVVKAHGIGGEIVVEIRTDDPDARFAQGNTLRGKASRGGGE--RDFVVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ GI + A L G+ + D P +++ + +Y +L G+ V TG VG
Sbjct: 62 -LLVRLAGISDRDAADALRGTLFVVDSDDLPPIDEADTYYDHELEGLH-VRTITGRDVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V SG + +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELLAV-------------------RRESGEAL-VPFVTAIVTSVSLDDGT 159
Query: 259 MQITPPKGLLEL 270
++I PP+GLL+L
Sbjct: 160 IEIDPPEGLLDL 171
>gi|209573737|sp|A1AN01.2|RIMM_PELPD RecName: Full=Ribosome maturation factor RimM
Length = 173
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 23/135 (17%)
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F+G+D ++QA+ LVGS + R PE E+ E+Y DL+G+ V E G
Sbjct: 62 PGK--FLIGFKGVDHIDQAQTLVGSEICLRRDQLPEPEEDEYYWCDLIGLEVATVE-GMA 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + +F +G++D + V+ G +GR IP + +++ VD+
Sbjct: 119 LGVLEEIFKAGSSD---------IYVVRG-----------AGREYLIPAIADVIHSVDLE 158
Query: 256 GREMQITPPKGLLEL 270
M ITP +GLL+L
Sbjct: 159 MGRMLITPLEGLLDL 173
>gi|315303689|ref|ZP_07874207.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
gi|313627938|gb|EFR96553.1| 16S rRNA processing protein RimM [Listeria ivanovii FSL F6-596]
Length = 172
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
+VG + + HGL GEI V +TDF RF T +L + + + + KLI R H
Sbjct: 6 NVGKIVNTHGLIGEIRVIATTDFANERFQVGNTVYLFE----KNSKKPEKLII-RSHRKH 60
Query: 139 KSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K++ +L FEG + Q + TL E +LE+ EFY +++G VV + GE +G
Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGTLKISEKQLTDLEENEFYFHEIIGCSVVTTD-GEELG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + GAND V V++G+++ IP ++V ++++ +
Sbjct: 120 EITEILTPGAND---------VWVVKGNDKKEK----------LIPXXXDVVKEINISDK 160
Query: 258 EMQITPPKGLLE 269
++ I +GLL+
Sbjct: 161 KITIEVMEGLLD 172
>gi|313901161|ref|ZP_07834649.1| 16S rRNA processing protein RimM [Clostridium sp. HGF2]
gi|373121393|ref|ZP_09535261.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
21_3]
gi|422327409|ref|ZP_16408436.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
6_1_45]
gi|312954119|gb|EFR35799.1| 16S rRNA processing protein RimM [Clostridium sp. HGF2]
gi|371663249|gb|EHO28439.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
6_1_45]
gi|371665411|gb|EHO30576.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
21_3]
Length = 167
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+++G + + HGL+GE+ VK TDFP+LRF L Q G+ ++K+ RE G
Sbjct: 4 INIGMLVNTHGLRGEMKVKVLTDFPQLRFQKGAVVHL-QLAQGQ---FDLKVQHVRESKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
Q ++ FEG D + Q GS L RE + EL++ E Y +L VV G +G
Sbjct: 60 Q--LLVKFEGYDDINQVEGWKGSMLTIREEELQELDEFEAYFHELQDA-VVYDMEGVQLG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV + +GAN +L V + + IPFV V D +
Sbjct: 117 TVSEIIETGANAILRV--------------------KTKDKDILIPFVRAFVKEFDRKNK 156
Query: 258 EMQITPPKGLL 268
M++ +GL+
Sbjct: 157 VMKVELMEGLV 167
>gi|443673504|ref|ZP_21138567.1| Ribosome maturation factor rimM [Rhodococcus sp. AW25M09]
gi|443413931|emb|CCQ16905.1| Ribosome maturation factor rimM [Rhodococcus sp. AW25M09]
Length = 182
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-REHPGQ 138
+G V HG++GE+ V+ TD P+ RF LR + +D REH G+
Sbjct: 5 IGRVAKSHGIKGEVVVEVRTDDPDDRFAAGNV--LRGRKPRSSAAPASYTVDAVREHSGR 62
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVG 197
+L GI+ A L G + D P +D EFY +L G+ V++ + G +VG
Sbjct: 63 --LLLRLNGIEDKTAADQLRGILFVVESTDLPPSDDPDEFYDHELEGLTVILTD-GSVVG 119
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V +S A +LL + ++ A + A + +PFV IV V + +
Sbjct: 120 NVREVLHSAAGELLSI-----TPALDLGRSAPTRAE------ILVPFVAAIVTSVSLADK 168
Query: 258 EMQITPPKGLLE 269
++I PP+GLL+
Sbjct: 169 TIEIDPPEGLLD 180
>gi|237809703|ref|YP_002894143.1| 16S rRNA-processing protein RimM [Tolumonas auensis DSM 9187]
gi|259585653|sp|C4LD26.1|RIMM_TOLAT RecName: Full=Ribosome maturation factor RimM
gi|237501964|gb|ACQ94557.1| 16S rRNA processing protein RimM [Tolumonas auensis DSM 9187]
Length = 173
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + +V+G++G + V TD PE F W ++ + RE++L + H
Sbjct: 7 VGRLGAVYGIKGWLKVNSFTDNPESIFDY--APWF---IMDKGMWREIQLTGWKRH--NN 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
I +G+D+ E A+ L G+ + P L G++Y RDL+G VV + G +GTV
Sbjct: 60 GLICKIDGVDSREDAQALTGADIAVLSDQLPALPKGDYYWRDLIGCAVVTTK-GYQLGTV 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV-EEIVPIVDMNGRE 258
+ +G+ND+L V +++N G +E RL IPF+ E+++ +D+ R
Sbjct: 119 SELMETGSNDVLVVQ--ANLNDAFGMKE----------RL--IPFIDEQVIKHIDITARL 164
Query: 259 MQI 261
+++
Sbjct: 165 IEV 167
>gi|339478625|gb|ABE95079.1| 16S rRNA processing protein rimM [Bifidobacterium breve UCC2003]
Length = 199
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF P + Q E + I
Sbjct: 8 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFE-PDSVLYSQD-------GETEYIVENS 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG D A L G L D E LE E+Y +DL+G+ + E
Sbjct: 60 RTFKDRWILKLEGTDDRTAAEALNGVELYGEADDAEEMLEADEWYPKDLIGLEARLSEGN 119
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG VV+V +S A LL + V + G + S D + +PFVE
Sbjct: 120 GLGLPAGQVVGKVVDVVDSPAQSLLKIRLVEPV--VTGQD---SKGEDVIEKTALVPFVE 174
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D++ + + + PP GL+
Sbjct: 175 ALVPEIDLDEQYLTLDPPGGLI 196
>gi|227551891|ref|ZP_03981940.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257895518|ref|ZP_05675171.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|293378383|ref|ZP_06624552.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
gi|293570324|ref|ZP_06681384.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|430841654|ref|ZP_19459573.1| ribosome maturation factor rimM [Enterococcus faecium E1007]
gi|431076948|ref|ZP_19494984.1| ribosome maturation factor rimM [Enterococcus faecium E1604]
gi|431108310|ref|ZP_19497461.1| ribosome maturation factor rimM [Enterococcus faecium E1613]
gi|431586228|ref|ZP_19520743.1| ribosome maturation factor rimM [Enterococcus faecium E1861]
gi|431737200|ref|ZP_19526154.1| ribosome maturation factor rimM [Enterococcus faecium E1972]
gi|431739686|ref|ZP_19528606.1| ribosome maturation factor rimM [Enterococcus faecium E2039]
gi|431752189|ref|ZP_19540873.1| ribosome maturation factor rimM [Enterococcus faecium E2620]
gi|227178963|gb|EEI59935.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1330]
gi|257832083|gb|EEV58504.1| ribosome maturation factor rimM [Enterococcus faecium Com12]
gi|291609603|gb|EFF38865.1| 16S rRNA processing protein RimM [Enterococcus faecium E980]
gi|292643247|gb|EFF61388.1| 16S rRNA processing protein RimM [Enterococcus faecium PC4.1]
gi|430494430|gb|ELA70680.1| ribosome maturation factor rimM [Enterococcus faecium E1007]
gi|430566403|gb|ELB05516.1| ribosome maturation factor rimM [Enterococcus faecium E1604]
gi|430569434|gb|ELB08438.1| ribosome maturation factor rimM [Enterococcus faecium E1613]
gi|430593406|gb|ELB31392.1| ribosome maturation factor rimM [Enterococcus faecium E1861]
gi|430598857|gb|ELB36573.1| ribosome maturation factor rimM [Enterococcus faecium E1972]
gi|430604302|gb|ELB41793.1| ribosome maturation factor rimM [Enterococcus faecium E2039]
gi|430614113|gb|ELB51106.1| ribosome maturation factor rimM [Enterococcus faecium E2620]
Length = 174
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + G++GE+ V +TDFPE R+ L Q G+ I E+ + R+H
Sbjct: 3 EYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQD--GKAPI-ELTVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+L+FEG ++ L + + +L++ EFY +++G+RVV +E G
Sbjct: 60 KNFD--LLSFEGHPSINDVEKYRDGILKVSKDNSVDLDENEFYYHEIIGLRVV-EEDGTE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND V V++ ++A + +P++ +V VD+
Sbjct: 117 LGKVKEILSPGAND---------VWVVQRPKKAD----------ILLPYIASVVKEVDLE 157
Query: 256 GREMQITPPKGLLE 269
+++ P+GL++
Sbjct: 158 AGVIRVEIPEGLID 171
>gi|418977016|ref|ZP_13524854.1| 16S rRNA processing protein RimM [Streptococcus mitis SK575]
gi|383350542|gb|EID28408.1| 16S rRNA processing protein RimM [Streptococcus mitis SK575]
Length = 172
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H QK++ I+ F+ + + G +L EGD +L+DGEFY +++G+ V E
Sbjct: 56 HRKQKNFDIIKFKDMYHINAIEKYKGYSLKVAEGDLNDLDDGEFYYHEIIGLEVY--EGD 113
Query: 194 ELVGTVVNVFNSGANDL 210
L+GT+ + GAND+
Sbjct: 114 NLIGTIKEILQPGANDV 130
>gi|291456064|ref|ZP_06595454.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|291382473|gb|EFE89991.1| 16S rRNA processing protein RimM [Bifidobacterium breve DSM 20213 =
JCM 1192]
Length = 204
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF P + Q E + I
Sbjct: 13 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFE-PDSVLYSQD-------GETEYIVENS 64
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG D A L G L D E LE E+Y +DL+G+ + E
Sbjct: 65 RTFKDRWILKLEGTDDRTAAEALNGVELYGEADDAEEMLEADEWYPKDLIGLEARLSEGN 124
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG VV+V +S A LL + V + G + S D + +PFVE
Sbjct: 125 GLGLPAGQVVGKVVDVVDSPAQSLLKIRLVEPV--VTGQD---SKGEDVIEKTALVPFVE 179
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D++ + + + PP GL+
Sbjct: 180 ALVPEIDLDEQYLTLDPPGGLI 201
>gi|402834350|ref|ZP_10882952.1| 16S rRNA processing protein RimM [Selenomonas sp. CM52]
gi|402277968|gb|EJU27034.1| 16S rRNA processing protein RimM [Selenomonas sp. CM52]
Length = 169
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V +G + HGL+GE+ V P TDFPE RF + LR+ +G E + V+ + H
Sbjct: 6 VVIGKAGAPHGLRGEVRVIPLTDFPE-RFES-----LREVFIG-ERVFHVEHV----HYH 54
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
++ +LT + E A L G L D L +GEFYT D++G+ V+ GE +G
Sbjct: 55 RQFVLLTLAECTSREAAAKLTGELLRVAREDAAPLAEGEFYTFDIIGL-AVLDMAGERLG 113
Query: 198 TVVNVFNSGANDL 210
V NV +G+ND+
Sbjct: 114 EVTNVLKTGSNDV 126
>gi|422860004|ref|ZP_16906648.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK330]
gi|327470887|gb|EGF16343.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK330]
Length = 172
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGTIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDILLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|418961240|ref|ZP_13513127.1| 16S rRNA processing protein [Lactobacillus salivarius SMXD51]
gi|380344907|gb|EIA33253.1| 16S rRNA processing protein [Lactobacillus salivarius SMXD51]
Length = 168
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + TDFPE RF ++R G+ E+K
Sbjct: 1 MNYYEVGKIVNTHGIKGELKIISKTDFPEDRFKPGNILYIRDN--GKINSYEIK-----S 53
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K + ++TF+G++ + L G TL E + L DG +Y ++G+ V E
Sbjct: 54 HRTHKQFEMITFKGLENINLVENLKGKTLEISEEQQESLSDGNYYHHQIIGLD-VFSEDN 112
Query: 194 ELVGTVVNVFNSGANDL 210
+G + + + GAND+
Sbjct: 113 NYIGVIKEIMSPGANDV 129
>gi|291539679|emb|CBL12790.1| 16S rRNA processing protein RimM [Roseburia intestinalis XB6B4]
Length = 194
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 45/210 (21%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+ + VG + + HG++GE+ V P+TD RF + +++V L G+EH
Sbjct: 20 NLLQVGVITTTHGVRGEVKVFPTTD-DAARF---------------KKLKQVILDTGKEH 63
Query: 136 -----PGQKSW----ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
G K + IL F+G D + +L + +L+ E++ DL+G++
Sbjct: 64 LALEIAGVKFFKNMVILKFKGYDNINDVEMFRKKSLYVTRENAVKLKKNEYFIADLIGLK 123
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
++ E GE +G + +V +GAND+ V EG+++ + +P ++
Sbjct: 124 MISDE-GEDLGELTDVLQTGANDVY-------VISKEGADD------------ILLPAIK 163
Query: 247 EIVPIVDMNGREMQITPPKGLLELNLRTDE 276
+ V VD+ G MQ+ GL +LN R +E
Sbjct: 164 DCVKQVDIEGGTMQVHLLDGLRDLNSRREE 193
>gi|347750520|ref|YP_004858085.1| 16S rRNA-processing protein RimM [Bacillus coagulans 36D1]
gi|347583038|gb|AEO99304.1| 16S rRNA processing protein RimM [Bacillus coagulans 36D1]
Length = 172
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDF R+ T +L + GR+ V + R H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISQTDFKAERYKPGNTLYLF--LPGRDEPLAVTIESHRVH- 60
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ +L FEG D++E+A G L E EL + EFY +++G VV GE V
Sbjct: 61 -KQFDLLKFEGFDSIEEAEKWKGGMLKVSEEQLDELGENEFYFHEIIGCEVVTT-AGEKV 118
Query: 197 GTVVNVFNSGANDL 210
GTV + GAND+
Sbjct: 119 GTVKEILTPGANDV 132
>gi|323702670|ref|ZP_08114331.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
gi|333923306|ref|YP_004496886.1| ribosome maturation factor rimM [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532333|gb|EGB22211.1| 16S rRNA processing protein RimM [Desulfotomaculum nigrificans DSM
574]
gi|333748867|gb|AEF93974.1| Ribosome maturation factor rimM [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 169
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 27/193 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F+ VG + + G++GE+ V P+TDFPE RF +L Q G+ R++ + EH
Sbjct: 4 EFITVGEIVNTQGIRGEVRVLPTTDFPE-RFKQTKKIFLLLQ--GQR--RQLTINRAWEH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ IL F+ + + +A L G L + +L +Y ++VG++V+ E G+
Sbjct: 59 --KQFIILKFDEVADMSEAEKLKGGLLQVPRTELTDLPKDCYYIFEIVGLKVI-DERGQE 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V +GAND V V++ + G+ + IP ++ +V +D+
Sbjct: 116 LGKVADVLRTGAND---------VYVVKRDQ----------GKDILIPALKSVVKKIDVP 156
Query: 256 GREMQITPPKGLL 268
MQ+ P+GL+
Sbjct: 157 AGLMQVELPEGLI 169
>gi|323351452|ref|ZP_08087108.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
gi|401681678|ref|ZP_10813575.1| 16S rRNA processing protein RimM [Streptococcus sp. AS14]
gi|322122676|gb|EFX94387.1| 16S rRNA processing protein RimM [Streptococcus sanguinis VMC66]
gi|400185826|gb|EJO20048.1| 16S rRNA processing protein RimM [Streptococcus sp. AS14]
Length = 172
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDILLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|422823464|ref|ZP_16871652.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK405]
gi|324992791|gb|EGC24711.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK405]
Length = 172
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --EDDVLLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|254487378|ref|ZP_05100583.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
gi|214044247|gb|EEB84885.1| 16S rRNA processing protein RimM [Roseobacter sp. GAI101]
Length = 194
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + +G++GE+ +K PE + +P T + +R +K
Sbjct: 16 DKIPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALALVRPIK------ 69
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
++ + + E+A L G+ L A P L D EFY DL+G+ V G
Sbjct: 70 ----NGFVARITDVTSKEEADALRGTLLYADRAQLPSLPDDEFYHADLLGLE-VYDTGGT 124
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V V N GA+DLL ++ A +SA+ V++PF + VP VD+
Sbjct: 125 LIGKVKTVQNHGADDLLE------------TQLAGTSAT------VFLPFTKAAVPTVDL 166
Query: 255 NGREMQITPPKGLL 268
+ PP G+L
Sbjct: 167 ASGRIIADPPDGIL 180
>gi|340786358|ref|YP_004751823.1| 16S rRNA processing protein [Collimonas fungivorans Ter331]
gi|340551625|gb|AEK61000.1| 16S rRNA processing protein [Collimonas fungivorans Ter331]
Length = 193
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 62 SATQEIVETSASGL----DFVDVGYVYSVHGLQGEISVKP-STDFPELRFTTPGTRWLRQ 116
SA+ + T+ +G D V VGY+ +G+ G + +KP S D L T WL +
Sbjct: 2 SASVNLSATAPAGTAIPSDLVVVGYITGAYGINGWVRIKPYSADADALLHAK--TWWLNR 59
Query: 117 QVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE 176
Q + +V+++ + H G + G+ + A + GS + P L D E
Sbjct: 60 Q--NAPELHDVEMMQAKNHSG--DIVARLMGVAGRDAAEAMKGSVVHIPRSHFPALADDE 115
Query: 177 FYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
FY DL+GM +V GE +G V ++ ++GA+ +L + +++ D +
Sbjct: 116 FYWVDLIGM-MVENLQGEQLGVVADLMDNGAHPILRITV------------PAAADQDKA 162
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQI 261
+ +PFVE+ V VD +++ +
Sbjct: 163 APELLVPFVEQFVKTVDQAAKKITV 187
>gi|256831067|ref|YP_003159795.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
gi|256580243|gb|ACU91379.1| 16S rRNA processing protein RimM [Desulfomicrobium baculatum DSM
4028]
Length = 182
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 26/196 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ V++G V HGL+GE+ ++P D P F G + ++ G++ + L R
Sbjct: 9 VKLVELGRVQKPHGLRGELCIEPYADSP---FIFEGLTRVYLRLPGKKP-KPCVLEGWRA 64
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G+ ++T + +QA G+ +LARE D P L++ EF DL+G+ VM G
Sbjct: 65 HQGRA--LITVDRSQGRDQAEAWRGADVLARERDLPPLDEDEFRPEDLLGLP-VMHVNGS 121
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + +L ++ D +G + +P V+E + +D+
Sbjct: 122 RIGVLEDIRDVAGQELWFIL-------------------DDAGNEIMLPAVDEFILDIDL 162
Query: 255 NGREMQITPPKGLLEL 270
+ + PP GLLEL
Sbjct: 163 EAGVILVDPPDGLLEL 178
>gi|296133546|ref|YP_003640793.1| 16S rRNA processing protein RimM [Thermincola potens JR]
gi|296032124|gb|ADG82892.1| 16S rRNA processing protein RimM [Thermincola potens JR]
Length = 174
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +G + + HG +GE+ V P TD P R + +LG E+ RE+ + R H
Sbjct: 8 LIAIGKIINTHGHKGEVKVFPLTDDPR-RMEELEKVYF---ILG-ESTRELTIKQVRYH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ IL+FE I + A L + + + L +G +Y D++G+ V E G +
Sbjct: 62 -KNFVILSFEEIKDMNAAELLKNGEICITKDELRSLPEGSYYIFDIIGLNVFTNE-GRYL 119
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + +V +GAND+ V SG+ IP +++IV +D
Sbjct: 120 GEITDVIQTGANDVYEVR------------------DSKSGKHYLIPALKQIVKSIDTEK 161
Query: 257 REMQITPPKGLLE 269
+EM I P +GLLE
Sbjct: 162 KEMIICPMEGLLE 174
>gi|379763156|ref|YP_005349553.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare
MOTT-64]
gi|378811098|gb|AFC55232.1| 16S rRNA-processing protein RimM [Mycobacterium intracellulare
MOTT-64]
Length = 171
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P+ RF PG LR + R+ + REH G+
Sbjct: 5 VGRVVKAHGIGGEIVVEIRTDDPDARF-APGNT-LRGKASRGGGERDFVVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L G+ + D P +++ + +Y +L G+ V TG VG
Sbjct: 62 -LLVRLAGVTDRDAADALRGTLFVVDSDDLPPIDEADTYYDHELEGLH-VRTITGHDVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V SG + +PFV IV V ++
Sbjct: 120 VAEVLHTAAGELLAV-------------------RRESGEAL-VPFVTAIVTSVSLDDGT 159
Query: 259 MQITPPKGLLEL 270
++I PP+GLL+L
Sbjct: 160 IEIDPPEGLLDL 171
>gi|296171461|ref|ZP_06852747.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894147|gb|EFG73907.1| 16S rRNA processing protein RimM [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 173
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GE+ V+ TD P RF T R G E R+ + REH G+
Sbjct: 5 VGRVAKAHGIGGEVVVEIRTDDPGARFAPGNTLRGRASRGGGE--RDFVVESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
+L G+ + A L G+ + D P +++ + +Y L G+ V G VG
Sbjct: 62 -LLLRLAGVTDRDSADALRGTVFVVDSDDLPPIDEPDTYYDHQLEGLHV-RTVAGHDVGV 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL V G +PFV IV V ++ R
Sbjct: 120 VAEVLHTAAGELLAV-------------------RRGDGGEALVPFVGAIVTSVSLDDRV 160
Query: 259 MQITPPKGLLEL 270
++I PP+GLL+L
Sbjct: 161 VEIDPPEGLLDL 172
>gi|256762839|ref|ZP_05503419.1| 16S rRNA processing protein RimM [Enterococcus faecalis T3]
gi|256964818|ref|ZP_05568989.1| 16S rRNA processing protein RimM [Enterococcus faecalis HIP11704]
gi|257422301|ref|ZP_05599291.1| 16S rRNA processing protein rimM [Enterococcus faecalis X98]
gi|307272900|ref|ZP_07554147.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0855]
gi|307287946|ref|ZP_07567979.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0109]
gi|384513530|ref|YP_005708623.1| 16S rRNA processing protein RimM [Enterococcus faecalis OG1RF]
gi|422704813|ref|ZP_16762623.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1302]
gi|422705498|ref|ZP_16763300.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0043]
gi|422735834|ref|ZP_16792100.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1341]
gi|430361700|ref|ZP_19426777.1| 16S rRNA processing protein RimM [Enterococcus faecalis OG1X]
gi|430368559|ref|ZP_19428300.1| 16S rRNA processing protein RimM [Enterococcus faecalis M7]
gi|256684090|gb|EEU23785.1| 16S rRNA processing protein RimM [Enterococcus faecalis T3]
gi|256955314|gb|EEU71946.1| 16S rRNA processing protein RimM [Enterococcus faecalis HIP11704]
gi|257164125|gb|EEU94085.1| 16S rRNA processing protein rimM [Enterococcus faecalis X98]
gi|306501091|gb|EFM70398.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0109]
gi|306510514|gb|EFM79537.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0855]
gi|315157026|gb|EFU01043.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0043]
gi|315163844|gb|EFU07861.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1302]
gi|315167369|gb|EFU11386.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1341]
gi|327535419|gb|AEA94253.1| 16S rRNA processing protein RimM [Enterococcus faecalis OG1RF]
gi|429512253|gb|ELA01861.1| 16S rRNA processing protein RimM [Enterococcus faecalis OG1X]
gi|429516315|gb|ELA05809.1| 16S rRNA processing protein RimM [Enterococcus faecalis M7]
Length = 174
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ T L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQE---KKAPIELVVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVEKDNLAELAEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ ++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRPKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|417942277|ref|ZP_12585551.1| Ribosome maturation factor rimM [Bifidobacterium breve CECT 7263]
gi|376167313|gb|EHS86164.1| Ribosome maturation factor rimM [Bifidobacterium breve CECT 7263]
Length = 204
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF P + Q E + I
Sbjct: 13 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFE-PDSVLYSQD-------GETEYIVENS 64
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG D A L G L D E LE E+Y +DL+G+ + E
Sbjct: 65 RTFKDRWILKLEGTDDRTAAEALNGVELYGEADDAEEMLEADEWYPKDLIGLEARLSEGN 124
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG VV+V +S A LL + V + G +S D + +PFVE
Sbjct: 125 GLGLPAGQVVGKVVDVVDSPAQSLLKIRLVEPV--VTGQ---NSKGEDVIEKTALVPFVE 179
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D++ + + + PP GL+
Sbjct: 180 ALVPEIDLDEQYLTLDPPGGLI 201
>gi|111225150|ref|YP_715944.1| 16S rRNA-processing protein RimM [Frankia alni ACN14a]
gi|122953795|sp|Q0RDP3.1|RIMM_FRAAA RecName: Full=Ribosome maturation factor RimM
gi|111152682|emb|CAJ64423.1| 16S rRNA processing protein rimM [Frankia alni ACN14a]
Length = 180
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 40/203 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI-REVKLIDGREHPGQ 138
VG + HG++G+++++ TD P+ RF VLGRE + + + R H G+
Sbjct: 7 VGRIGRPHGVRGDVTIEVRTDLPQRRFALGA-------VLGREGGGAPLTVAEARWHSGR 59
Query: 139 KSWILTFEGIDTVEQARPL--VGSTLLAREGDRP--ELEDGE------FYTRDLVGMRVV 188
+L F+G++ A L V T+ + E P + ED E ++ RDLVG+ V
Sbjct: 60 --LLLRFQGVEDRGAAEALRDVLLTIDSAEAGPPVDDDEDAEGEGGDIWWDRDLVGLEAV 117
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
G +G V +V ++ A DLL +V G E +PFV EI
Sbjct: 118 TT-AGATLGRVTDVIHAPAGDLL------AVGRPGGGEHL-------------VPFVREI 157
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
VP VD + + PP GLL+L+
Sbjct: 158 VPTVDPAAGRIVVDPPPGLLDLD 180
>gi|322418206|ref|YP_004197429.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
gi|320124593|gb|ADW12153.1| 16S rRNA processing protein RimM [Geobacter sp. M18]
Length = 172
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG 132
SG V +G + HG++G++ V P + + +L+ + + E ++
Sbjct: 2 SGSKKVLIGKIQGPHGIRGQLRVIPFAGDAS-SISQLNSVFLKSP---KGAMEEYSVVSA 57
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
+ + K ILT + D + Q LVGS + A P+L D EFY DL+G++VV +
Sbjct: 58 KNN--GKRIILTLKPFDNINQVLHLVGSEIYADRVALPDLPDDEFYWSDLLGLQVVTSD- 114
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
GE +G +V++ +G+ND ++V+ + +GR V IP +E++V V
Sbjct: 115 GEELGELVDIIETGSND-VYVVKH-------------------NGREVLIPALEDVVLSV 154
Query: 253 DMNGREMQITPPKGLLEL 270
D+ M ++ P+GLL+L
Sbjct: 155 DLAEGRMTVSLPEGLLDL 172
>gi|422882403|ref|ZP_16928859.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK355]
gi|332359632|gb|EGJ37449.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK355]
Length = 172
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMHVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDILLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLRIDIEQGRVDVEIPEGLDDEN 172
>gi|172057908|ref|YP_001814368.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
gi|229564322|sp|B1YIM5.1|RIMM_EXIS2 RecName: Full=Ribosome maturation factor RimM
gi|171990429|gb|ACB61351.1| 16S rRNA processing protein RimM [Exiguobacterium sibiricum 255-15]
Length = 169
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 27/195 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++++V + + HGL+GE+ + STDFPE RF +L + + R+
Sbjct: 1 MEWLEVAKIANTHGLKGELKLLASTDFPEQRFKVGNEVFLESNGI----YTPFMISSYRK 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ ++TF+G+ + G L EL + EFY +++G V E +
Sbjct: 57 H--KQFIMVTFKGMQHINDVEKYKGLKLYVHPEALQELGEHEFYYHEIIGCTVFDGE--D 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V + +GAND+ + + V IP++E++V +D+
Sbjct: 113 EIGVVSEILETGANDVW-------------------TIKRPGKKDVLIPYIEQVVASIDV 153
Query: 255 NGREMQITPPKGLLE 269
+ +QITP GL+E
Sbjct: 154 EAKRIQITPLPGLIE 168
>gi|410594767|ref|YP_006951494.1| Ribosome maturation factor rimM [Streptococcus agalactiae SA20-06]
gi|421531909|ref|ZP_15978284.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae
STIR-CD-17]
gi|403642809|gb|EJZ03615.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae
STIR-CD-17]
gi|410518406|gb|AFV72550.1| Ribosome maturation factor rimM [Streptococcus agalactiae SA20-06]
Length = 172
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG--RETIREVKLIDG 132
+++ +VG + + GLQGE+ V TDF E RF + QVL E + V I+
Sbjct: 1 MEYFNVGKIVNTQGLQGEMRVLSVTDFVEERFK-------KGQVLALFDEKNQFVMDIEI 53
Query: 133 REHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
H QK++ I+ F+G+ + G TL E +L+DGEFY +++G+ V E
Sbjct: 54 ASHRKQKNFDIIKFKGMYHINDIEKYKGFTLKVAENQLSDLKDGEFYYHEIIGLDVYEGE 113
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
EL+G + + GAND V V+E + R + +P++ +V
Sbjct: 114 --ELIGKIKEILQPGAND---------VWVVERHGK----------RDLLLPYIPPVVLE 152
Query: 252 VDMNGREMQITPPKGL 267
VD++ + +Q+ +GL
Sbjct: 153 VDLSNQRVQVELMEGL 168
>gi|304384769|ref|ZP_07367115.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
gi|427441883|ref|ZP_18925461.1| 16S rRNA processing protein RimM [Pediococcus lolii NGRI 0510Q]
gi|304328963|gb|EFL96183.1| 16S rRNA processing protein RimM [Pediococcus acidilactici DSM
20284]
gi|425786909|dbj|GAC46249.1| 16S rRNA processing protein RimM [Pediococcus lolii NGRI 0510Q]
Length = 192
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 23/193 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +V + + GL+GE+ V TDFPE RF L + + V + +
Sbjct: 22 MNYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAK- 80
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P + W++ G+D++ + G L E EL DGEFY +++G+ V+ E G+
Sbjct: 81 -PFKGMWLIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHEIIGLTVI--EDGQ 137
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V + + G ND V V+E + + +P++ ++V VD+
Sbjct: 138 TLGKVKEILSYGPND---------VWVVERPGKKD----------LLLPYLNDVVLKVDL 178
Query: 255 NGREMQITPPKGL 267
+ +++ P+GL
Sbjct: 179 DKSIVEVAVPEGL 191
>gi|254447247|ref|ZP_05060714.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
gi|198263386|gb|EDY87664.1| 16S rRNA processing protein RimM [gamma proteobacterium HTCC5015]
Length = 170
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + HG++G I V TD E F T WL ++ R + ++
Sbjct: 4 DTLIVGKLGGPHGVRGWIKVLSYTDPRENLFEY--TPWLIERPSDRGAQWQGYDVES-AR 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P K W++ + ID + A L+ S + RE PELE+GE+Y R+L+G+ VV + G++
Sbjct: 61 PQGKGWVVKLKDIDDRDAALQLMHSRVSVREDQLPELEEGEYYWRELIGLEVVTSQ-GQV 119
Query: 196 VGTVVNVFNSGANDLLHV 213
+G V + +GAND+L V
Sbjct: 120 LGKVSQLLETGANDVLVV 137
>gi|302554428|ref|ZP_07306770.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
gi|302472046|gb|EFL35139.1| 16S rRNA processing protein RimM [Streptomyces viridochromogenes
DSM 40736]
Length = 180
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLTTDPAATGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L +TLL E D EL +GE +Y L+ + VV + G VG
Sbjct: 59 -LLLRFEGVSDRTGAEAL-RNTLLIAEIDPDELPEGEDEYYDHQLIDLDVVTAD-GTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + DL V +GSE V IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPTQDLF------IVERPDGSE-------------VLIPFVEEIVAEIDLEEQ 156
Query: 258 EMQITPPKGLLE 269
+ ITPP GL++
Sbjct: 157 KAVITPPPGLID 168
>gi|124003528|ref|ZP_01688377.1| 16S rRNA processing protein RimM [Microscilla marina ATCC 23134]
gi|123991097|gb|EAY30549.1| 16S rRNA processing protein RimM [Microscilla marina ATCC 23134]
Length = 177
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +VGY+ +G++GEI D E ++ + + I +V+ + G
Sbjct: 5 DCYEVGYIAKTYGVKGEIHAVFDVDNSEEYREIESIFVVKDRHMVPYFIEQVRFVQGYVR 64
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
L FE ID V+QA+ LVGS L+ PE E+ E+Y D++G VV + GE
Sbjct: 65 -------LKFEEIDDVDQAKMLVGSKLMLPIDVLPETEEEEYYFHDILGYMVVDADKGE- 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV-EEIVPIVDM 254
+G V +++S DL+ V G+ V IP++ ++I+ +D
Sbjct: 117 IGKVTQLYDSTNQDLIGVT--------------------HQGKEVLIPYIKDQIIQKLDH 156
Query: 255 NGREMQITPPKGLLELNLRTD 275
+ + +T P GLL++ L +
Sbjct: 157 EQKVIVVTLPGGLLDVYLEDE 177
>gi|334336699|ref|YP_004541851.1| ribosome maturation factor rimM [Isoptericola variabilis 225]
gi|334107067|gb|AEG43957.1| Ribosome maturation factor rimM [Isoptericola variabilis 225]
Length = 189
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V V HGL+GE+++ TD PE R G T+ V++ GR
Sbjct: 5 VARVGRAHGLRGEVALDLRTDAPEERLAVGERLETDPPSAGPLTVTRVRVHQGR------ 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
W++TF A L G L+ + D + ED +Y +L G+R + E G +VG V
Sbjct: 59 -WLVTFAEAADRSAAEALRGVELVV-DADASDEEDA-WYPHELRGLRAEL-EDGTVVGEV 114
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + + A+D L + + G +PFV +IVP+VD+ G +
Sbjct: 115 VGLEHLPAHDALAI-------------------RETGGERTLVPFVRQIVPVVDVEGGRV 155
Query: 260 QITPPKGLL 268
+TPP GLL
Sbjct: 156 VLTPPGGLL 164
>gi|254776207|ref|ZP_05217723.1| 16S rRNA-processing protein RimM [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 175
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 22/192 (11%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V HG+ GEI V+ TD P R T + G E R + REH G+
Sbjct: 5 VGRVVKAHGISGEIVVEIRTDDPAARLAPGNTLRAKPSRGGPE--RSCVIESAREHGGR- 61
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVGT 198
++ G+ + A L G+ + + P++++ + +Y L G++V G VG
Sbjct: 62 -LLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQV-RTTGGRRVGA 119
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V V ++ A +LL A +D + R V +PFV IV V +
Sbjct: 120 VAEVLHTAAGELL----------------AVRDDADGAPREVLVPFVSAIVTAVSLEDGL 163
Query: 259 MQITPPKGLLEL 270
++I PP GLL+L
Sbjct: 164 IEIDPPDGLLDL 175
>gi|229545511|ref|ZP_04434236.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1322]
gi|255975553|ref|ZP_05426139.1| 16S rRNA processing protein RimM [Enterococcus faecalis T2]
gi|256619383|ref|ZP_05476229.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 4200]
gi|256853423|ref|ZP_05558793.1| ribosome maturation factor rimM [Enterococcus faecalis T8]
gi|256959221|ref|ZP_05563392.1| 16S rRNA processing protein RimM [Enterococcus faecalis DS5]
gi|257079289|ref|ZP_05573650.1| ribosome maturation factor rimM [Enterococcus faecalis JH1]
gi|257084889|ref|ZP_05579250.1| 16S rRNA processing protein RimM [Enterococcus faecalis Fly1]
gi|257090191|ref|ZP_05584552.1| 16S rRNA processing protein rimM [Enterococcus faecalis CH188]
gi|257416344|ref|ZP_05593338.1| 16S rRNA processing protein RimM [Enterococcus faecalis ARO1/DG]
gi|294779809|ref|ZP_06745196.1| 16S rRNA processing protein RimM [Enterococcus faecalis PC1.1]
gi|300861299|ref|ZP_07107386.1| 16S rRNA processing protein RimM [Enterococcus faecalis TUSoD Ef11]
gi|307268249|ref|ZP_07549633.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4248]
gi|307275653|ref|ZP_07556794.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2134]
gi|307280517|ref|ZP_07561566.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0860]
gi|307295976|ref|ZP_07575808.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0411]
gi|312900945|ref|ZP_07760239.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0470]
gi|312902686|ref|ZP_07761890.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0635]
gi|384518912|ref|YP_005706217.1| 16S rRNA processing protein RimM [Enterococcus faecalis 62]
gi|397700138|ref|YP_006537926.1| 16S rRNA processing protein RimM [Enterococcus faecalis D32]
gi|421513574|ref|ZP_15960337.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29212]
gi|422686321|ref|ZP_16744519.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4000]
gi|422690124|ref|ZP_16748196.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0630]
gi|422708725|ref|ZP_16766253.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0027]
gi|422719399|ref|ZP_16776040.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0017]
gi|422730177|ref|ZP_16786570.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0012]
gi|422732487|ref|ZP_16788818.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0645]
gi|422741780|ref|ZP_16795802.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2141]
gi|422868899|ref|ZP_16915424.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1467]
gi|424759965|ref|ZP_18187620.1| 16S rRNA processing protein RimM [Enterococcus faecalis R508]
gi|428767309|ref|YP_007153420.1| 16S rRNA processing protein RimM [Enterococcus faecalis str.
Symbioflor 1]
gi|229309427|gb|EEN75414.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1322]
gi|255968425|gb|EET99047.1| 16S rRNA processing protein RimM [Enterococcus faecalis T2]
gi|256598910|gb|EEU18086.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 4200]
gi|256711882|gb|EEU26920.1| ribosome maturation factor rimM [Enterococcus faecalis T8]
gi|256949717|gb|EEU66349.1| 16S rRNA processing protein RimM [Enterococcus faecalis DS5]
gi|256987319|gb|EEU74621.1| ribosome maturation factor rimM [Enterococcus faecalis JH1]
gi|256992919|gb|EEU80221.1| 16S rRNA processing protein RimM [Enterococcus faecalis Fly1]
gi|256999003|gb|EEU85523.1| 16S rRNA processing protein rimM [Enterococcus faecalis CH188]
gi|257158172|gb|EEU88132.1| 16S rRNA processing protein RimM [Enterococcus faecalis ARO1/DG]
gi|294453183|gb|EFG21598.1| 16S rRNA processing protein RimM [Enterococcus faecalis PC1.1]
gi|300850338|gb|EFK78088.1| 16S rRNA processing protein RimM [Enterococcus faecalis TUSoD Ef11]
gi|306496307|gb|EFM65886.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0411]
gi|306504065|gb|EFM73281.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0860]
gi|306507758|gb|EFM76887.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2134]
gi|306515409|gb|EFM83940.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4248]
gi|310633740|gb|EFQ17023.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0635]
gi|311292044|gb|EFQ70600.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0470]
gi|315028951|gb|EFT40883.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4000]
gi|315033330|gb|EFT45262.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0017]
gi|315036710|gb|EFT48642.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0027]
gi|315143553|gb|EFT87569.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2141]
gi|315149306|gb|EFT93322.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0012]
gi|315161511|gb|EFU05528.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0645]
gi|315576950|gb|EFU89141.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0630]
gi|323481045|gb|ADX80484.1| 16S rRNA processing protein RimM [Enterococcus faecalis 62]
gi|329572862|gb|EGG54487.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1467]
gi|397336777|gb|AFO44449.1| 16S rRNA processing protein RimM [Enterococcus faecalis D32]
gi|401673305|gb|EJS79700.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29212]
gi|402404036|gb|EJV36670.1| 16S rRNA processing protein RimM [Enterococcus faecalis R508]
gi|427185482|emb|CCO72706.1| 16S rRNA processing protein RimM [Enterococcus faecalis str.
Symbioflor 1]
Length = 174
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ T L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQE---KKAPIELVVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ ++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRPKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|296453527|ref|YP_003660670.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
gi|296182958|gb|ADG99839.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum JDM301]
Length = 204
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSHDG------- 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
E + I + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 -ETEYIVEGSRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVEE+VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEELVPDIDLEEQYLTLDPPGGLI 201
>gi|422854384|ref|ZP_16901048.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK160]
gi|325695879|gb|EGD37770.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK160]
Length = 172
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIERFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+GT+ + GAND+ V R + +P++ +
Sbjct: 111 --ENDILLGTIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|417810404|ref|ZP_12457083.1| 16S rRNA processing protein [Lactobacillus salivarius GJ-24]
gi|335349200|gb|EGM50700.1| 16S rRNA processing protein [Lactobacillus salivarius GJ-24]
Length = 168
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + TDFPE RF ++R G+ E+K R
Sbjct: 1 MNYYEVGKIVNTHGIKGELKIISKTDFPEDRFKPGNILYIRDN--GKINSYEIK--SYRT 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ ++TF+G++ + L G TL E + L DG +Y ++G+ V E
Sbjct: 57 H--KQFEMITFKGLENINLVENLKGKTLEISEEQQESLSDGNYYHHQIIGLD-VFSEDNN 113
Query: 195 LVGTVVNVFNSGANDL 210
+G + + + GAND+
Sbjct: 114 YIGVIKEIMSPGANDV 129
>gi|300767273|ref|ZP_07077185.1| 16S rRNA processing protein RimM [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180487|ref|YP_003924615.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380032472|ref|YP_004889463.1| 16S rRNA processing protein [Lactobacillus plantarum WCFS1]
gi|418275236|ref|ZP_12890559.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum NC8]
gi|38258523|sp|Q88WJ3.1|RIMM_LACPL RecName: Full=Ribosome maturation factor RimM
gi|300495092|gb|EFK30248.1| 16S rRNA processing protein RimM [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045978|gb|ADN98521.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342241715|emb|CCC78949.1| 16S rRNA processing protein [Lactobacillus plantarum WCFS1]
gi|376008787|gb|EHS82116.1| 16S rRNA processing protein [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 174
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE------VK 128
+D+ VG + + HG++GE+ V TDFPE RF + QQ+ +T E VK
Sbjct: 1 MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFK------VGQQLSLFKTPDETTGGITVK 54
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ RE G + LTFEG+D + G T+ L GE+Y +VG++VV
Sbjct: 55 IAKAREQKGL--YFLTFEGLDNINDVERYKGWTIKVPAEALHALPAGEYYYHQIVGLQVV 112
Query: 189 MKETGELVGTVVNVFNSGANDL 210
E +GT+ + + GAND+
Sbjct: 113 TT-ADEPLGTIKEILSPGANDV 133
>gi|34499129|ref|NP_903344.1| 16S rRNA-processing protein RimM [Chromobacterium violaceum ATCC
12472]
gi|48474349|sp|Q7NRV6.1|RIMM_CHRVO RecName: Full=Ribosome maturation factor RimM
gi|34104980|gb|AAQ61336.1| 16S rRNA processing protein [Chromobacterium violaceum ATCC 12472]
Length = 169
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V +G+V G++G + + T++ + F P T WL + + + +G
Sbjct: 5 DLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYP-TWWLGKN----GSWKPYAFENGAVQ 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P K+ EG+D + A L G+ + + PE DGE+Y DL+G+ VV + GE
Sbjct: 60 P--KALAAKLEGVDDRDAAEALRGTQIAIPRSELPEAGDGEYYWADLIGLSVV-NQQGET 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE-IVPIVDM 254
+G V ++ +GAND+L V++G D RL IPFV++ ++ +V
Sbjct: 117 LGKVDSLLETGANDVL---------VVKG--------GDGQQRL--IPFVDQYVLEVVPA 157
Query: 255 NGR 257
GR
Sbjct: 158 EGR 160
>gi|339009349|ref|ZP_08641921.1| ribosome maturation factor RimM [Brevibacillus laterosporus LMG
15441]
gi|338773827|gb|EGP33358.1| ribosome maturation factor RimM [Brevibacillus laterosporus LMG
15441]
Length = 173
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + GL+GE+ V +TDFP++RF L L I V++ REH
Sbjct: 6 FYTVGKLVNTQGLRGEMRVVSTTDFPDVRFKKGNKLHLFHPSLTEPVI--VEIASYREH- 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ ILTF+G ++ G L E + ELE+ EFY L+G V+ +TGE++
Sbjct: 63 -KDFTILTFKGYSSINDVEKYKGGELKVPETELLELEEDEFYIHQLIGCEVI-TDTGEVL 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + V GAND V V++G++ G+ + +PF+++ + VD+
Sbjct: 121 GKITEVLQPGAND---------VWVVKGNK----------GKEIMLPFIDDCIKEVDVQN 161
Query: 257 REMQITPPKGLL 268
+++ GLL
Sbjct: 162 KKVICHLMDGLL 173
>gi|253573495|ref|ZP_04850838.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847023|gb|EES75028.1| 16S rRNA processing protein RimM [Paenibacillus sp. oral taxon 786
str. D14]
Length = 172
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 26/183 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V TDFPE+RF P +R L ++ ET +++ P ++
Sbjct: 8 VGKIVNTHGIRGELRVLLQTDFPEVRF-APKSRLL---IVHPETGERLEVTVQSARPYKQ 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+I+ F + G L + + EL + E+Y +++G RVV E GE +G +
Sbjct: 64 MYIVKFVEFSNINDVERFKGRDLKVSKAESVELPENEYYFHEIIGCRVVSDE-GEELGEI 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + GAND+ A +G+ + +P ++++V +D+N +E
Sbjct: 123 VEILRPGANDVW-------------------VAKLPNGKQLLLPVIDDVV--LDVNVKEK 161
Query: 260 QIT 262
IT
Sbjct: 162 IIT 164
>gi|153813991|ref|ZP_01966659.1| hypothetical protein RUMTOR_00198 [Ruminococcus torques ATCC 27756]
gi|317501514|ref|ZP_07959712.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088011|ref|ZP_08336933.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439700|ref|ZP_08619306.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848387|gb|EDK25305.1| 16S rRNA processing protein RimM [Ruminococcus torques ATCC 27756]
gi|316897143|gb|EFV19216.1| 16S rRNA-processing protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409159|gb|EGG88614.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015292|gb|EGN45110.1| 16S rRNA processing protein RimM [Lachnospiraceae bacterium
1_1_57FAA]
Length = 168
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F+ VG + S HG++GE+ V P+TD P RF + L++ +L R++ +
Sbjct: 4 FLQVGAITSTHGIRGEVKVFPTTDDPA-RF-----KKLKKVILDTGK-RQIDMEIQSVRF 56
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ I+ F+GID + GS+L + LE+ E+Y DL+GM V +E G
Sbjct: 57 FKQFVIVKFKGIDNINDVEQYKGSSLFVSRENAVSLEENEYYIADLIGMEVFTEE-GHF- 114
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V +V +GAN+ V +I+ SD G V +P +++ + VD+
Sbjct: 115 GIVKDVMETGANE---------VYIID---------SDVHGE-VLVPAIKQCIENVDVEN 155
Query: 257 REMQITPPKGLL 268
+MQI +GL+
Sbjct: 156 GKMQIRLLEGLI 167
>gi|335040126|ref|ZP_08533262.1| Ribosome maturation factor rimM [Caldalkalibacillus thermarum
TA2.A1]
gi|334179951|gb|EGL82580.1| Ribosome maturation factor rimM [Caldalkalibacillus thermarum
TA2.A1]
Length = 175
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 28/196 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL---RQQVLGRETIREVKLIDGR 133
+ VG + + HG++GE+ V +DF + R+ T + QQ G+ + + R
Sbjct: 4 YYTVGKIVNTHGIRGEVRVITVSDFKDKRYQPGNTLYFFASHQQAEGKP----LTVASHR 59
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H ++ +L FE ++ G L E +R L +GE+Y ++G VV +TG
Sbjct: 60 TH--KQFDLLAFEDHHSINDVEQYKGGWLKIPEDEREPLPEGEYYFDQIIGCEVV-TDTG 116
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+++GTV + GAND+ V S + + IP++E++V VD
Sbjct: 117 QMLGTVETILTPGANDVWVV------------------KSPGRKKEILIPYIEDVVKEVD 158
Query: 254 MNGREMQITPPKGLLE 269
++ + + I +GLL+
Sbjct: 159 VDQKRITIHVIEGLLD 174
>gi|386842795|ref|YP_006247853.1| 16S rRNA processing protein [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103096|gb|AEY91980.1| 16S rRNA processing protein [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796087|gb|AGF66136.1| 16S rRNA processing protein [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 185
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLAPGAVLATDPASAGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+L F G+ A L + L+A +RPE ED E+Y L+ + VV E G VG
Sbjct: 59 -LLLRFAGVTDRNAAEALRNTLLIAEVDPEERPEGED-EYYDHQLIDLDVVT-EDGTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + DL V A G V IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPTQDLFIV-------------------ERADGSEVLIPFVEEIVTEIDLAEQ 156
Query: 258 EMQITPPKGLLE 269
+ I PP GL++
Sbjct: 157 KAVIAPPPGLID 168
>gi|22537502|ref|NP_688353.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae 2603V/R]
gi|25011467|ref|NP_735862.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae NEM316]
gi|77407214|ref|ZP_00784183.1| 16S rRNA processing protein RimM [Streptococcus agalactiae H36B]
gi|77409298|ref|ZP_00786003.1| 16S rRNA processing protein RimM [Streptococcus agalactiae COH1]
gi|406709748|ref|YP_006764474.1| 16S rRNA processing protein RimM [Streptococcus agalactiae
GD201008-001]
gi|421148179|ref|ZP_15607845.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae GB00112]
gi|424049190|ref|ZP_17786741.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae ZQ0910]
gi|48474455|sp|Q8DYW8.1|RIMM_STRA5 RecName: Full=Ribosome maturation factor RimM
gi|48474456|sp|Q8E4H6.1|RIMM_STRA3 RecName: Full=Ribosome maturation factor RimM
gi|22534382|gb|AAN00226.1|AE014254_6 16S rRNA processing protein RimM [Streptococcus agalactiae 2603V/R]
gi|24413005|emb|CAD47084.1| unknown [Streptococcus agalactiae NEM316]
gi|77172095|gb|EAO75259.1| 16S rRNA processing protein RimM [Streptococcus agalactiae COH1]
gi|77174176|gb|EAO77076.1| 16S rRNA processing protein RimM [Streptococcus agalactiae H36B]
gi|389649390|gb|EIM70872.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae ZQ0910]
gi|401685155|gb|EJS81169.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae GB00112]
gi|406650633|gb|AFS46034.1| 16S rRNA processing protein RimM [Streptococcus agalactiae
GD201008-001]
Length = 172
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG--RETIREVKLIDG 132
+++ +VG + + GLQGE+ V TDF E RF + QVL E + V I+
Sbjct: 1 MEYFNVGKIVNTQGLQGEMRVLSVTDFVEERFK-------KGQVLALFDEKNQFVMDIEI 53
Query: 133 REHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
H QK++ I+ F+G+ + G TL E +L+DGEFY +++G+ V E
Sbjct: 54 ASHRKQKNFDIIKFKGMYHINDIEKYKGFTLKVAEDQLSDLKDGEFYYHEIIGLDVYEGE 113
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
EL+G + + GAND V V+E + R + +P++ +V
Sbjct: 114 --ELIGKIKEILQPGAND---------VWVVERHGK----------RDLLLPYIPPVVLE 152
Query: 252 VDMNGREMQITPPKGL 267
VD++ + +Q+ +GL
Sbjct: 153 VDLSNQRVQVELMEGL 168
>gi|225018484|ref|ZP_03707676.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
gi|224948755|gb|EEG29964.1| hypothetical protein CLOSTMETH_02431 [Clostridium methylpentosum
DSM 5476]
Length = 174
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 47/203 (23%)
Query: 77 FVDVGYVYSVHGLQGEISVKP-------STDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
F++ G + + HG+ GE+ ++P T+F L F G +T R V+
Sbjct: 6 FLETGKIVATHGIAGEVRIQPWCDEAEFLTEFDALYFDAAG-----------KTQRTVE- 53
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE--DGEFYTRDLVGMRV 187
R + ++ F+G+D+VE+A+ L + DR ELE +G ++ +DL+G+ V
Sbjct: 54 ---RARVHKNVVVVKFKGVDSVEEAQSLRNQIVYI---DREELELPEGTYFIQDLIGLEV 107
Query: 188 VMKETGELV-GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
+ + + V GT+ V GAND+ H + +G+E IP +
Sbjct: 108 LDADDPQTVYGTLCEVSQPGANDVYH------IRRPDGTENL-------------IPAIP 148
Query: 247 EIVPIVDMNGREMQITPPKGLLE 269
++V D++G M I P KGL +
Sbjct: 149 DVVVQTDLDGNRMFIRPLKGLFD 171
>gi|94309694|ref|YP_582904.1| 16S rRNA-processing protein RimM [Cupriavidus metallidurans CH34]
gi|209573590|sp|Q1LQE1.1|RIMM_RALME RecName: Full=Ribosome maturation factor RimM
gi|93353546|gb|ABF07635.1| 16S rRNA processing protein [Cupriavidus metallidurans CH34]
Length = 220
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW--LRQQVLG--------RETIR 125
D V+VGYV + +G++G I V+P D + RW LR G E +
Sbjct: 40 DLVEVGYVGAAYGIRGWIKVQPHAD--DASALLHARRWWLLRAPPAGVVSAPAQSAEAV- 96
Query: 126 EVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
+K+ REH G + + G+ A L G + R D P E+GEFY DL+G
Sbjct: 97 SIKISQSREHSG--TVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGC 154
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
VV E GE +G V + ++GA+ +L V + + +G A+ RL IPFV
Sbjct: 155 AVV-NEQGEALGEVTGLIDNGAHQILQV----AYELPDGK---------AAERL--IPFV 198
Query: 246 EEIVPIVDMNGREMQI 261
+ + VD R + +
Sbjct: 199 DAFLRTVDTPARRIVV 214
>gi|254556544|ref|YP_003062961.1| 16S rRNA processing protein [Lactobacillus plantarum JDM1]
gi|254045471|gb|ACT62264.1| 16S rRNA processing protein [Lactobacillus plantarum JDM1]
Length = 174
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE------VK 128
+D+ VG + + HG++GE+ V TDFPE RF + QQ+ +T E VK
Sbjct: 1 MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFK------VGQQLSLFKTPDETTGGITVK 54
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ RE G + LTFEG+D + G T+ L GE+Y +VG++VV
Sbjct: 55 IAKAREQKGL--YFLTFEGLDNINDVERYKGWTIKVPAEALHPLPAGEYYYHQIVGLQVV 112
Query: 189 MKETGELVGTVVNVFNSGANDL 210
E +GT+ + + GAND+
Sbjct: 113 TT-ADEPLGTIKEILSPGANDV 133
>gi|75676965|ref|YP_319386.1| 16S rRNA-processing protein RimM [Nitrobacter winogradskyi Nb-255]
gi|109893027|sp|Q3SNV7.1|RIMM_NITWN RecName: Full=Ribosome maturation factor RimM
gi|74421835|gb|ABA06034.1| 16S rRNA processing protein RimM [Nitrobacter winogradskyi Nb-255]
Length = 173
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V V + + HGL+GE+ + T+ P + T G + ++ R++++ R
Sbjct: 5 VCVARIGAAHGLRGEVRLWTFTEDP-MSVTRYGP------LSTKDGARQLEVSHAR--AA 55
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
I T G+ T E+A L G+ L PE ++GEFY DL+G+ G +G
Sbjct: 56 SDHLIATLTGVTTREEAERLNGTELYVARDKLPETDEGEFYHADLIGL-AAFDAAGTALG 114
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV + N GA D++ + + A G + +PF + +VPIVD+ G
Sbjct: 115 TVAAIHNFGAGDIIEI-------------------APARGPTLMLPFTDAVVPIVDIAGG 155
Query: 258 EMQITPP 264
+ I P
Sbjct: 156 RVVIEAP 162
>gi|76787824|ref|YP_329996.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae A909]
gi|109893056|sp|Q3K0F7.1|RIMM_STRA1 RecName: Full=Ribosome maturation factor RimM
gi|76562881|gb|ABA45465.1| 16S rRNA processing protein RimM [Streptococcus agalactiae A909]
Length = 172
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG--RETIREVKLIDG 132
+++ +VG + + GLQGE+ V TDF E RF + QVL E + V I+
Sbjct: 1 MEYFNVGKIVNTQGLQGEMRVLSVTDFVEERFK-------KGQVLALFDEKNQFVMDIEI 53
Query: 133 REHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
H QK++ I+ F+G+ + G TL E +L+DGEFY +++G+ V E
Sbjct: 54 ASHRKQKNFDIIKFKGMYHINDIEKYKGFTLKVAEDQLSDLKDGEFYYHEIIGLGVYEGE 113
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
EL+G + + GAND V V+E + R + +P++ +V
Sbjct: 114 --ELIGKIKEILQPGAND---------VWVVERHGK----------RDLLLPYIPPVVLE 152
Query: 252 VDMNGREMQITPPKGL 267
VD++ + +Q+ +GL
Sbjct: 153 VDLSNQRVQVELMEGL 168
>gi|259047125|ref|ZP_05737526.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
gi|259036175|gb|EEW37430.1| 16S rRNA processing protein RimM [Granulicatella adiacens ATCC
49175]
Length = 171
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + GL+GE+ V +TDF E R+ + + E + V + R H
Sbjct: 4 FYKVGKIVNTQGLRGEVRVISTTDFAEERYKKGTELAIFKD---GEFLTFVTVASHRRHK 60
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEG++ +E L E ELED EFY +++G+ +V E GE++
Sbjct: 61 NFD--LLTFEGMNRIEDVEKYKECLLKVAEEQLTELEDDEFYYHEIIGLEIVTDE-GEVL 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V + + G+ND+ V +G +E + IPF+E +V VD
Sbjct: 118 GKVTEILSPGSNDVWVVK-------QKGKKE------------LLIPFIEPVVYKVDKEE 158
Query: 257 REMQITPPKGLLE 269
++ I +GL++
Sbjct: 159 KKAYIHLLEGLID 171
>gi|156845588|ref|XP_001645684.1| hypothetical protein Kpol_1043p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156116351|gb|EDO17826.1| hypothetical protein Kpol_1043p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 478
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 126/268 (47%), Gaps = 25/268 (9%)
Query: 327 LANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEGSLGPCARAK 386
L H G+ + + + ++ ++R T+L+ K + +S S +GS+ P +
Sbjct: 19 LFGHFDGLGADEQDELIHDLSSVAQRVEPTKLVKDCKDAIQLSKANGSNKGSIEPLPSSS 78
Query: 387 --KVVTNSSLQKK----GNHLVSEGKKAMVLVV--HNSEEGNECDPHSVVSESTANKSLA 438
++ N S +++ G +S G+ A++L+ + G+ ++KSL
Sbjct: 79 YHSIIGNESAEREYWDLGMKAISNGEVAVILMAGGQGTRLGSSLPKGCYDIGLPSHKSLF 138
Query: 439 LLQTLLSDDQRFVKIENRAS------MPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWF 492
+Q ++ ++++N A +P ++ + E F +N +F ++ ++ F
Sbjct: 139 QIQA-----EKLIRLQNLAGTNNSIQIPWYIMTSEPTRKSTEAFFKENSYFGLEASQIMF 193
Query: 493 LEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYI 552
+ LP + N K+L+ SP +Q+P G+GG++ + +NI++N ++ ++++
Sbjct: 194 FNQGTLPAF-----DLNGEKLLLSSPTRLVQSPDGNGGLYRAIKDNNILQNFEKRNIKHV 248
Query: 553 QI-CTANPRNAIGNSMFLGFVKSCGADI 579
+ C N + + + +F+GF G ++
Sbjct: 249 YMYCVDNVLSKVADPVFIGFAIKYGFEL 276
>gi|333398154|ref|ZP_08479967.1| 16S rRNA processing protein RimM [Leuconostoc gelidum KCTC 3527]
Length = 173
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ VG + + HG++GE+ + TDF RF GT Q+ ++ VK+ R H
Sbjct: 6 NYFKVGTIVNTHGIRGEVKIMAITDFAADRFKK-GTEL---QINTKQGFVPVKVQASRMH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ W++ FEG+ + + + G R L E+Y +++G RV+ G
Sbjct: 62 --KNMWLVLFEGVTNINEIEKYKTHDIYVIGGAREALGADEYYYNEIIGCRVI-DLAGND 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + +GAND+ V S + S A IP ++++V VD+
Sbjct: 119 IGVISEIMETGANDVWVV-----------SRDGQSDA--------LIPMIDDVVKNVDVA 159
Query: 256 GREMQITPPKGLLE 269
G+ + I +GLL+
Sbjct: 160 GKLVTIDALEGLLD 173
>gi|85714455|ref|ZP_01045443.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
gi|85698902|gb|EAQ36771.1| 16S rRNA processing protein RimM [Nitrobacter sp. Nb-311A]
Length = 202
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPE--LRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
V V + + HGL+GE+ + T+ P +R+ TR + R++++ R
Sbjct: 34 VCVARIGAAHGLRGEVRLWTFTEDPMSVMRYGPLTTR---------DGARQLEVAHAR-- 82
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ + TF G+ T E+A L G+ L P+ +D EFY DL+G+ V G
Sbjct: 83 AAKDHLVATFTGVTTREEAERLNGTELYVARDKLPKTDDDEFYHADLIGLAAV-DAAGTT 141
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV + N GA D++ + + A G + +PF + +VP VD+
Sbjct: 142 LGTVAAIHNFGAGDIIEI-------------------APAQGPTLLLPFTDAVVPTVDIA 182
Query: 256 GREMQITPP 264
G + I P
Sbjct: 183 GGRVVIEIP 191
>gi|448821155|ref|YP_007414317.1| Ribosome maturation factor RimM [Lactobacillus plantarum ZJ316]
gi|448274652|gb|AGE39171.1| Ribosome maturation factor RimM [Lactobacillus plantarum ZJ316]
Length = 174
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIRE------VK 128
+D+ VG + + HG++GE+ V TDFPE RF + QQ+ +T E VK
Sbjct: 1 MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFK------VGQQLNLFKTPDETTGGITVK 54
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
+ RE G + LTFEG+D + G T+ L GE+Y +VG++VV
Sbjct: 55 IAKAREQKGL--YFLTFEGLDNINDVERYKGWTIKVPAEALHALPAGEYYYHQIVGLQVV 112
Query: 189 MKETGELVGTVVNVFNSGANDL 210
E +GT+ + + GAND+
Sbjct: 113 TT-ADEPLGTIKEILSPGANDV 133
>gi|422697121|ref|ZP_16755067.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1346]
gi|315174247|gb|EFU18264.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1346]
Length = 174
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ T L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQE---KKAPIELVVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVAKDNLAELGEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ ++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRPKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|260588676|ref|ZP_05854589.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
gi|260541151|gb|EEX21720.1| 16S rRNA processing protein RimM [Blautia hansenii DSM 20583]
Length = 168
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + + HG++GE+ V P+TD RF +L+ +L +T +E+ +D
Sbjct: 3 DLLQVGVITTTHGIRGEVKVFPTTDDAH-RFD-----YLKSVLL--DTGKELCELDIERV 54
Query: 136 PGQKSW-ILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K + IL F+ +D + P G +L + RE P L++ E+Y DL+GM V + E G
Sbjct: 55 KYFKQYVILKFKDVDDINDIEPYKGKSLYVTREFAVP-LKENEYYIADLIGMEVYL-EDG 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ GT+++V +GAND+ V +G+ V IP +++ + VD
Sbjct: 113 KHFGTLMDVMETGANDVYVVHL-------------------EAGKEVLIPAIKDCIKEVD 153
Query: 254 MNGREMQITPPKGL 267
+ +M + KGL
Sbjct: 154 VENGKMVVHLLKGL 167
>gi|254449413|ref|ZP_05062850.1| 16S rRNA processing protein RimM [Octadecabacter arcticus 238]
gi|198263819|gb|EDY88089.1| 16S rRNA processing protein RimM [Octadecabacter arcticus 238]
Length = 183
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + G+ G++ +K PE L TP TR ++ TI +I G+
Sbjct: 6 DRIVVGTLAGSFGVNGDVRLKSFCADPEALADYTPLTRADGSEI---TTI----VIKGQT 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ S I +GI T E+A L G L AR P L D E+Y DLVG+ + G
Sbjct: 59 ---KGSLIARVDGITTKEEADGLRGMELYARRDQLPSLPDDEYYHADLVGL-MTYDTGGA 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V V +GA+DLL ++ S S D V +PF + IVP VD+
Sbjct: 115 KLGRVKAVQTNGADDLLEII--------------SPSDKDT----VLVPFTKVIVPTVDL 156
Query: 255 NGREMQITPPKGLL 268
+ + PP+GL
Sbjct: 157 ASGRIVLDPPRGLF 170
>gi|326791388|ref|YP_004309209.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
gi|326542152|gb|ADZ84011.1| 16S rRNA processing protein RimM [Clostridium lentocellum DSM 5427]
Length = 173
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V PSTD P RF L++ + R+ + ++ R H G
Sbjct: 7 VGKIVNTHGVKGELKVMPSTDDPT-RFEQ-----LKEIYVERKKLESYEIQSVRYHKGMV 60
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+L +GID + A G+ L D LE+ E+Y DL GM+V + +G +
Sbjct: 61 --LLKLKGIDDMTTAELFKGALLKIDRKDSLPLEEDEYYIADLYGMQVYTYDEERYLGEI 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V+V +G+ND+ V A D + +P +++++ VD+ +M
Sbjct: 119 VDVIYTGSNDVYAV-------------RKEDRAKD-----LLLPAIKQVIKSVDVKQNKM 160
Query: 260 QIT 262
+T
Sbjct: 161 HVT 163
>gi|15900672|ref|NP_345276.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae TIGR4]
gi|111658333|ref|ZP_01409021.1| hypothetical protein SpneT_02000473 [Streptococcus pneumoniae
TIGR4]
gi|418129943|ref|ZP_12766827.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07643]
gi|418186782|ref|ZP_12823312.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47360]
gi|418229515|ref|ZP_12856122.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP01]
gi|419477441|ref|ZP_14017266.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA18068]
gi|421226948|ref|ZP_15683662.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2072047]
gi|421242770|ref|ZP_15699292.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2081074]
gi|421247031|ref|ZP_15703518.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2082170]
gi|421270199|ref|ZP_15721056.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR48]
gi|21362870|sp|Q97RM5.1|RIMM_STRPN RecName: Full=Ribosome maturation factor RimM
gi|14972254|gb|AAK74916.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae TIGR4]
gi|353803235|gb|EHD83527.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07643]
gi|353853368|gb|EHE33351.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47360]
gi|353889701|gb|EHE69469.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP01]
gi|379566823|gb|EHZ31810.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA18068]
gi|395598018|gb|EJG58224.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2072047]
gi|395610090|gb|EJG70171.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2081074]
gi|395614667|gb|EJG74685.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2082170]
gi|395870851|gb|EJG81964.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR48]
Length = 172
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + VL E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELVLFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|409427395|ref|ZP_11261904.1| 16S rRNA-processing protein RimM [Pseudomonas sp. HYS]
Length = 178
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG ++SVHG++GE+ V FT P L R L E +++V+L+ G
Sbjct: 10 DLIVVGKIFSVHGVRGEVKV--------FSFTDPIENLLDYRHWTLRHEGKVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R QK + +G+D ++AR L G + P L E+Y LVG++V+ ++
Sbjct: 62 R--STQKDLVAKLKGLDDRDEARLLSGYEICISRSLLPNLSADEYYWYQLVGLKVINQDE 119
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+L G + ++ +GAND++ V + + + D RL +P+ E+ V +
Sbjct: 120 -QLFGKIDHLLETGANDVMVV-------------KPCAGSLDDRERL--LPYTEQCVLKI 163
Query: 253 DMNGREMQI 261
D+ EM++
Sbjct: 164 DLVAGEMRV 172
>gi|374328635|ref|YP_005078819.1| 16S rRNA processing protein RimM [Pseudovibrio sp. FO-BEG1]
gi|359341423|gb|AEV34797.1| 16S rRNA processing protein RimM [Pseudovibrio sp. FO-BEG1]
Length = 185
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 32/196 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + + + + HG++GE+ VKP D P L F G ++ + R+ K+ R
Sbjct: 7 DRILMAQIGAAHGIRGEVRVKPFGDDP-LSFGDYG------KLESEDGSRKFKVKRARV- 58
Query: 136 PGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
QK+ ++T FEG++ +A L G L PE ED EFY DL+G++ + E
Sbjct: 59 --QKNVVVTKFEGVNDRNEAEALNGLKLYIPRERLPETEDEDEFYHSDLIGLKA-LDENK 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E +GTV+ + + GA DL+ + + SG+ + PF + +VP+++
Sbjct: 116 EQIGTVLALLDFGAGDLIEI-------------------APKSGKSLLFPFTKAVVPVIN 156
Query: 254 MNGREMQITPPKGLLE 269
+ +++ P+G E
Sbjct: 157 LKEGFVEVHAPEGFYE 172
>gi|408356885|ref|YP_006845416.1| ribosome maturation factor RimM [Amphibacillus xylanus NBRC 15112]
gi|407727656|dbj|BAM47654.1| ribosome maturation factor RimM [Amphibacillus xylanus NBRC 15112]
Length = 170
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 25/194 (12%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++F +VG + + HG++GE+ V TDF + RF +L L +T +KL+ R
Sbjct: 1 MEFFNVGKIVNTHGIKGEVKVVRITDFDQ-RFQPGNQLYL---FLPNQT-TPIKLMIERH 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
++ +LTF+G ++ L E D LE+G +Y +++G VV +GE
Sbjct: 56 RKHKQFDMLTFKGYYSINDVEHFKQGMLKISEADLHPLEEGSYYYHEIIGCEVVTT-SGE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V V GAND+ V + +++ IP++++IV V++
Sbjct: 115 KLGPVAEVLAPGANDVWVVKRKNQKDLL-------------------IPYIDDIVKEVNI 155
Query: 255 NGREMQITPPKGLL 268
+++ I P +GLL
Sbjct: 156 EQKQITIEPMEGLL 169
>gi|315502433|ref|YP_004081320.1| 16S rRNA processing protein rimm [Micromonospora sp. L5]
gi|315409052|gb|ADU07169.1| 16S rRNA processing protein RimM [Micromonospora sp. L5]
Length = 179
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 44/205 (21%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGT------RWLRQQVLGRETIRE 126
VG + HG++GE++V+ TD PE RF T PG W L E+
Sbjct: 5 VGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLTTEPGVVPSEPGAWRVPPTLTVES--- 61
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGM 185
R H G+ ++ FEG+ + A L + L D ED E F+ LVG+
Sbjct: 62 -----ARWHQGR--LLVAFEGVLERDVAEALRNTLLGVDSADVAPPEDPEEFHDHQLVGL 114
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
VV ++ GE VG V + ++ A+D+L V+ E GR +PFV
Sbjct: 115 TVVTRD-GEHVGEVARIDHAPASDML---------VLRRPE----------GRTALVPFV 154
Query: 246 EEIVPIVDMNGREMQITPPKGLLEL 270
+ IVP VD+ G + + P GLL+L
Sbjct: 155 KAIVPEVDLAGGRVVVDLPGGLLDL 179
>gi|270290353|ref|ZP_06196578.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
gi|270281134|gb|EFA26967.1| 16S rRNA processing protein RimM [Pediococcus acidilactici 7_4]
Length = 192
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 23/193 (11%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +V + + GL+GE+ V TDFPE RF L + + V + +
Sbjct: 22 MNYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAK- 80
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P + W++ G+D++ + G L E EL DGEFY ++G+ V+ E G+
Sbjct: 81 -PFKGMWLIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHKIIGLTVI--EDGQ 137
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V + + G ND V V+E + + +P++ ++V VD+
Sbjct: 138 TLGKVKEILSYGPND---------VWVVERPGKKD----------LLLPYLNDVVLKVDL 178
Query: 255 NGREMQITPPKGL 267
+ +++ P+GL
Sbjct: 179 DKSIVEVAVPEGL 191
>gi|452995944|emb|CCQ92345.1| 16S rRNA processing protein [Clostridium ultunense Esp]
Length = 173
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + HG++GE+ V +TDFPE RFT T +L + + + L R H
Sbjct: 5 FYTVGKIVNTHGIRGELRVISTTDFPEERFTPGATLYLFTE--DGSSPLPLSLESHRSH- 61
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ IL F+G D GS L E +R L GE+Y ++G+ V E GE V
Sbjct: 62 -KQFEILKFKGYDDRNTVEKWKGSLLKVSERERKPLPPGEYYFDQIIGL-TVETEEGERV 119
Query: 197 GTVVNVFNSGANDL 210
G V + GAND+
Sbjct: 120 GVVKEILQPGANDV 133
>gi|424780623|ref|ZP_18207496.1| 16S rRNA processing protein RimM [Catellicoccus marimammalium
M35/04/3]
gi|422843025|gb|EKU27472.1| 16S rRNA processing protein RimM [Catellicoccus marimammalium
M35/04/3]
Length = 177
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 24/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + GL+GE+ V TDF E RF PG L +E I + + R H
Sbjct: 8 EYLNVGKIVNTQGLKGEVRVLAVTDFAEERF-APGKELLLFLPKSKEPI-ALTVETSRRH 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +IL F G D + + L D ELE+ EFY +++ V + GEL
Sbjct: 66 --KNFYILKFVGYDHINEVEKFRDGELKVNREDTVELEENEFYYFEIIDCLVEDETRGEL 123
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G + + GAND V V++ + V IP++E +V VD+
Sbjct: 124 -GKITEILTPGAND---------VWVVQSKKYGE----------VLIPYIESVVKSVDVK 163
Query: 256 GREMQITPPKGLLE 269
+++ + P+GL++
Sbjct: 164 NKKVFVDLPEGLID 177
>gi|339301251|ref|ZP_08650359.1| 16S rRNA processing protein RimM [Streptococcus agalactiae ATCC
13813]
gi|417005679|ref|ZP_11944272.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae FSL
S3-026]
gi|319745250|gb|EFV97568.1| 16S rRNA processing protein RimM [Streptococcus agalactiae ATCC
13813]
gi|341577492|gb|EGS27900.1| 16S rRNA-processing protein RimM [Streptococcus agalactiae FSL
S3-026]
Length = 172
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 27/194 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF ++ L E + V I+
Sbjct: 1 MEYFNVGKIVNTQGLQGEMRVLSVTDFVEERFKKG-----QELALFDEKNQFVMDIEIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H QK++ I+ F+G+ + G TL E +L+DGEFY +++G+ V E
Sbjct: 56 HRKQKNFDIIKFKGMYHINDIEKYKGFTLKVAENQLSDLKDGEFYYHEIIGLDVYEGE-- 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
EL+G + + GAND V V+E + R + +P++ +V VD
Sbjct: 114 ELIGKIKEILQPGAND---------VWVVERHGK----------RDLLLPYIPPVVLEVD 154
Query: 254 MNGREMQITPPKGL 267
++ + +Q+ +GL
Sbjct: 155 LSNQRVQVELMEGL 168
>gi|346314315|ref|ZP_08855836.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
2_2_44A]
gi|345906673|gb|EGX76397.1| 16S rRNA processing protein RimM [Erysipelotrichaceae bacterium
2_2_44A]
Length = 167
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 27/191 (14%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+++G + + HGL+GE+ VK TDFP+LRF L Q G+ ++K+ RE G
Sbjct: 4 INIGMLVNTHGLRGEMKVKVLTDFPQLRFQKGAVVHL-QLAQGQ---LDLKIQHVRESKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
Q ++ F+G D + Q GS L RE + EL++ E Y +L VV G +G
Sbjct: 60 Q--LLVKFKGYDDINQVECWKGSMLTIREEELQELDEYEAYFYELQDA-VVYDMDGVQLG 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
TV + +GAN +L V + + IPFV V D +
Sbjct: 117 TVSEIIETGANAILRV--------------------KTKDKDILIPFVRAFVKEFDRKSK 156
Query: 258 EMQITPPKGLL 268
M++ +GL+
Sbjct: 157 VMKVELMEGLV 167
>gi|94987015|ref|YP_594948.1| RimM protein, required for 16S rRNA processing [Lawsonia
intracellularis PHE/MN1-00]
gi|442555849|ref|YP_007365674.1| 16S rRNA processing protein RimM [Lawsonia intracellularis N343]
gi|172046239|sp|Q1MQV0.1|RIMM_LAWIP RecName: Full=Ribosome maturation factor RimM
gi|94731264|emb|CAJ54627.1| RimM protein, required for 16S rRNA processing [Lawsonia
intracellularis PHE/MN1-00]
gi|441493296|gb|AGC49990.1| 16S rRNA processing protein RimM [Lawsonia intracellularis N343]
Length = 173
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI--REVKLIDGRE 134
V VG + HG++GEI + +R+T +L + L + ++ ++I R
Sbjct: 5 LVAVGVLSRPHGIKGEIRL--------IRYTDSIDVFLGEVFLQKSNSLPKKAEIISSRI 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G ++ F+G L G TLL PE+E E Y DL+G VV+ T E
Sbjct: 57 HQGVA--LVCFKGFSDRSAVEVLRGQTLLVSRSFLPEIESNESYLCDLLGFSVVLDNTDE 114
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
++G + V G +L ++ G+ V +P + E V VD
Sbjct: 115 VIGKLEYVSFPGGQELWSIIT-------------------PEGKEVLLPAIPEFVLEVDT 155
Query: 255 NGREMQITPPKGLLEL 270
N + ++I PPKGLLEL
Sbjct: 156 NAQLIRINPPKGLLEL 171
>gi|418472090|ref|ZP_13041861.1| 16S rRNA-processing protein RimM [Streptomyces coelicoflavus
ZG0656]
gi|371547299|gb|EHN75688.1| 16S rRNA-processing protein RimM [Streptomyces coelicoflavus
ZG0656]
Length = 191
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASAGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+L F G+ A L + L+A +RPE ED E+Y L+ + VV E G VG
Sbjct: 59 -LLLRFAGVHDRTGAEALRNTLLIADVDPAERPEDED-EYYDHQLIDLDVVT-EDGTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + DL V+E + G V++PFV EIV +D++ +
Sbjct: 116 RITEISHLPTQDLF---------VVERPD----------GTEVYVPFVSEIVTEIDLDAQ 156
Query: 258 EMQITPPKGLLE 269
I PP GL++
Sbjct: 157 RAVIAPPPGLID 168
>gi|254464202|ref|ZP_05077613.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
gi|206685110|gb|EDZ45592.1| 16S rRNA processing protein RimM [Rhodobacterales bacterium Y4I]
Length = 167
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + G++GE+ +K PE + +P + + R +K
Sbjct: 3 DLICVGAIAGSFGVRGEVRLKSFCAVPEEIEDYSPLSNEDGSKTYSLTITRPIK------ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ EG++T E A + G L AR P L D EFY DL+G+ V G
Sbjct: 57 ----NGFAALLEGVETKEDADAIKGLRLFARRDQLPLLPDDEFYHADLIGLE-VYDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+GTV +V N GA+DLL I G ++ V +PF E VP VD+
Sbjct: 112 LLGTVKSVQNHGASDLLE---------IHGPGLKAT---------VLLPFTLEAVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
+ PP GL
Sbjct: 154 TQGRIIADPPDGLF 167
>gi|85706778|ref|ZP_01037870.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
gi|85668836|gb|EAQ23705.1| 16S rRNA processing protein RimM [Roseovarius sp. 217]
Length = 169
Score = 67.4 bits (163), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 84/202 (41%), Gaps = 40/202 (19%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTP-----GTRWLRQQVLGRETIRE 126
S D + VG + G++GE+ +K T PE + +P GTR + G+ T
Sbjct: 2 SDSDRICVGAIGGAFGVRGEVRLKSFTAMPEDIASYSPLTSEDGTRQFDISLTGQTT--- 58
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
+ GI T E A L G+ L A P L D E+Y DL+G+
Sbjct: 59 ------------NGFTAHLSGIATKEAADALRGTRLYALRAQLPNLPDDEYYHADLIGLE 106
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V G L+G V V N GA+DLL I G +++ V +PF
Sbjct: 107 V-FDTGGTLLGRVKAVLNHGASDLLE---------IHGPGLSAT---------VLLPFTL 147
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
E VP VD+ + PP GL+
Sbjct: 148 EAVPTVDLASGRIIADPPDGLI 169
>gi|256824951|ref|YP_003148911.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
gi|256688344|gb|ACV06146.1| 16S rRNA processing protein RimM [Kytococcus sedentarius DSM 20547]
Length = 182
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 29/183 (15%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
H L+GE++V+ TD PE+R GT Q V E + + R H G +L FE
Sbjct: 26 HALKGEVTVQLHTDEPEVRLAV-GTA--VQTVPAEEG--PLTIASRRVHQGVT--LLGFE 78
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSG 206
+ + A L G L+A + EL+ FY DL G+ VV + GE +G V ++
Sbjct: 79 QVTGRDGAEALRGVVLVAPADE--ELDGEGFYPEDLRGLEVVDGQ-GEPLGAVKDLHLRP 135
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKG 266
A DLL V + +G V +PFVEE+VP VD+ ++ +T P G
Sbjct: 136 AQDLLEV-------------------TTTAGHDVLVPFVEELVPHVDLEAGQVTVTAPAG 176
Query: 267 LLE 269
LLE
Sbjct: 177 LLE 179
>gi|229549757|ref|ZP_04438482.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29200]
gi|255972453|ref|ZP_05423039.1| 16S rRNA processing protein RimM [Enterococcus faecalis T1]
gi|257087114|ref|ZP_05581475.1| 16S rRNA processing protein RimM [Enterococcus faecalis D6]
gi|312950936|ref|ZP_07769846.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0102]
gi|422692762|ref|ZP_16750777.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0031]
gi|422695285|ref|ZP_16753273.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4244]
gi|422723950|ref|ZP_16780440.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2137]
gi|422725134|ref|ZP_16781602.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0312]
gi|424672912|ref|ZP_18109855.1| 16S rRNA processing protein RimM [Enterococcus faecalis 599]
gi|229305026|gb|EEN71022.1| 16S rRNA processing protein RimM [Enterococcus faecalis ATCC 29200]
gi|255963471|gb|EET95947.1| 16S rRNA processing protein RimM [Enterococcus faecalis T1]
gi|256995144|gb|EEU82446.1| 16S rRNA processing protein RimM [Enterococcus faecalis D6]
gi|310631085|gb|EFQ14368.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0102]
gi|315025913|gb|EFT37845.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX2137]
gi|315147568|gb|EFT91584.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX4244]
gi|315152221|gb|EFT96237.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0031]
gi|315159820|gb|EFU03837.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0312]
gi|402353418|gb|EJU88250.1| 16S rRNA processing protein RimM [Enterococcus faecalis 599]
Length = 174
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ T L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGATLLLFQE---KKAPIELVVESHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVAKDNLAELGEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ ++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRPKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|383649258|ref|ZP_09959664.1| 16S rRNA-processing protein RimM [Streptomyces chartreusis NRRL
12338]
Length = 186
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 66/194 (34%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI--DGREHPG 137
V + HG++GE++V+ TD PELR PGT VL + L GR H G
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLA-PGT------VLATDPAAAGPLTIETGRVHSG 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGEL 195
+ +L FEG+ A L +TLL E D EL +GE +Y L+ + VV + G
Sbjct: 58 R--LLLRFEGVGDRTGAEAL-RNTLLIAEIDPEELPEGEDEYYDHQLIDLDVVTAD-GTE 113
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + + + DL V +GSE V IPFVEEIV +D+
Sbjct: 114 VGRITEISHLPTQDLF------IVERPDGSE-------------VMIPFVEEIVSEIDLA 154
Query: 256 GREMQITPPKGLLE 269
++ ITPP GL++
Sbjct: 155 EQKAVITPPPGLID 168
>gi|407477589|ref|YP_006791466.1| ribosome maturation factor RimM [Exiguobacterium antarcticum B7]
gi|407061668|gb|AFS70858.1| Ribosome maturation factor RimM [Exiguobacterium antarcticum B7]
Length = 169
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 41/202 (20%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK------ 128
+++++V + + HGL+GE+ + STDFPE RF +G E EV
Sbjct: 1 MEWLEVAKIANTHGLKGELKLLASTDFPEQRFK-----------VGNEVFLEVNGAYVPF 49
Query: 129 -LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
+ R+H ++ ++TF+ + + G L + EL + E+Y +++G V
Sbjct: 50 TITSYRKH--KQFIMVTFKDMHHINDVEKYKGLKLYVQPEALQELGEHEYYYHEIIGCTV 107
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
E + +G + + +GAND+ + + V IP++E+
Sbjct: 108 FDGE--DEIGVISEILETGANDVWTI-------------------KRPGKKDVLIPYIEQ 146
Query: 248 IVPIVDMNGREMQITPPKGLLE 269
+V +D+ + +QITP GL+E
Sbjct: 147 VVASIDVKAKRIQITPLPGLIE 168
>gi|383782194|ref|YP_005466761.1| putative 16S rRNA processing protein [Actinoplanes missouriensis
431]
gi|381375427|dbj|BAL92245.1| putative 16S rRNA processing protein [Actinoplanes missouriensis
431]
Length = 189
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 65/208 (31%), Positives = 92/208 (44%), Gaps = 40/208 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR----------------ET 123
VG + HG++GE+SV TD PE RFT G+ ++ + R E
Sbjct: 5 VGQIGKPHGIRGEVSVVVRTDEPEERFTA-GSVFITEVPRDRRVNAGPAGAPAPGVPFEV 63
Query: 124 IREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDL 182
+++ L R H G+ I FEGI A L G L D ED EF+ L
Sbjct: 64 PKQLTLESIRWHQGRG--IAVFEGISDRNVAEALRGVFLQVDSADLAPPEDPEEFHDHQL 121
Query: 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWI 242
VG+RV + G L GTV + ++ ++DL+ + A G I
Sbjct: 122 VGLRVESAD-GTLHGTVSRIDHAPSSDLIVL-------------------KKAEGGTALI 161
Query: 243 PFVEEIVPIVDMNGREMQITPPKGLLEL 270
PFV IVP VD+ G + + P+GLL+L
Sbjct: 162 PFVTAIVPTVDLAGGRVIVDLPEGLLDL 189
>gi|21223948|ref|NP_629727.1| 16S rRNA-processing protein RimM [Streptomyces coelicolor A3(2)]
gi|289768842|ref|ZP_06528220.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
gi|61230608|sp|P0A4D3.1|RIMM_STRCO RecName: Full=Ribosome maturation factor RimM
gi|61230611|sp|P0A4D4.1|RIMM_STRLI RecName: Full=Ribosome maturation factor RimM
gi|3191986|emb|CAA19385.1| putative 16S rRNA processing protein [Streptomyces coelicolor
A3(2)]
gi|3336921|emb|CAB06806.1| hypothetical protein [Streptomyces lividans]
gi|289699041|gb|EFD66470.1| 16S rRNA processing protein RimM [Streptomyces lividans TK24]
Length = 188
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASTGPLTIES-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAR--EGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
+L F G+ A L + L+A +RPE ED E+Y L+ + VV E G VG
Sbjct: 59 -LLLRFAGVHDRTGAEALRNTLLIADVDPDERPEDED-EYYDHQLIDLDVVT-EDGTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + DL V +GSE V++PFV EIV +D++ +
Sbjct: 116 RITEISHLPTQDLF------VVERPDGSE-------------VYVPFVSEIVTGIDLDAQ 156
Query: 258 EMQITPPKGLLE 269
I PP GL++
Sbjct: 157 RAVIDPPPGLID 168
>gi|453364546|dbj|GAC79823.1| ribosome maturation factor RimM [Gordonia malaquae NBRC 108250]
Length = 178
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD P+ RF G R + + G V + R
Sbjct: 1 MDLV-VGRVVKTHGVRGELVVDVRTDDPQTRFAV-GARLVGRAPKGAGDTEYV-VTAARN 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
H G+ +L+ +G+ A L G+ + D +D EFY +L G+ V G
Sbjct: 58 HSGR--LLLSLKGVADRTAADALRGTLFVIDAADVDSGDDPDEFYDHELEGV-AVSTVAG 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ VGT+ ++ + D+L + GR V +PFV ++VP V
Sbjct: 115 DPVGTLTSILHLPGGDVLAI-------------------RTEDGREVLVPFVRQMVPTV- 154
Query: 254 MNGREMQITPPKGLLELNLRTDER 277
++I PP+GL++L+ ER
Sbjct: 155 -TRERIEIDPPEGLIDLDTAVSER 177
>gi|56698087|ref|YP_168458.1| 16S rRNA-processing protein RimM [Ruegeria pomeroyi DSS-3]
gi|67461274|sp|Q5LNF0.1|RIMM_SILPO RecName: Full=Ribosome maturation factor RimM
gi|56679824|gb|AAV96490.1| 16S rRNA processing protein RimM [Ruegeria pomeroyi DSS-3]
Length = 167
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG V G++GE+ +K PE + +P T + R I + I
Sbjct: 3 DLICVGSVAGSFGVRGEVRLKSFCAVPEDIEMYSPLTD---ESGTARYPIVLTRAI---- 55
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ + G++T E+A L G L + P L D EFY DL+G+ V G
Sbjct: 56 ---KNGFAAHLGGVETKEEADALKGLRLYTQRDRLPSLPDDEFYHTDLIGLE-VFDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V++V N GA DLL + G S V +PF + VP VD+
Sbjct: 112 LLGKVISVQNHGAADLLEI----------GGAGLKSP--------VLLPFTQAAVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
R + PP+GL
Sbjct: 154 EQRRIVADPPEGLF 167
>gi|152980656|ref|YP_001352282.1| 16S rRNA-processing protein RimM [Janthinobacterium sp. Marseille]
gi|209573563|sp|A6SVI5.1|RIMM_JANMA RecName: Full=Ribosome maturation factor RimM
gi|151280733|gb|ABR89143.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille]
Length = 179
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKP-STDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D V VGY+ +GL G + V+P S D L T T WL + +V+++ +
Sbjct: 6 DLVLVGYISGAYGLNGWVRVRPYSADADAL--LTAKTWWL-----DKPEFHDVEMMQSKI 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G + G+ + A L G+T+ P L D EFY DL+G+ V + GE
Sbjct: 59 HTGDV--VAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQ-GE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V ++ ++GA+ +L V + A ++ A+ + + IPFVE+ V VD
Sbjct: 116 HLGQVSDMMDNGAHPILRVAV---------PQAAETTDPKAAPQELLIPFVEQFVITVDR 166
Query: 255 NGREMQI 261
+++ +
Sbjct: 167 TAKKITV 173
>gi|344174067|emb|CCA85848.1| 16S rRNA processing protein [Ralstonia syzygii R24]
Length = 213
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L + T WL+ G + R + +
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPLGDAEALLHAS--TWWLKPAA-GASAVPSDWRVLPVGT 99
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G + R D P D EFY DL+G +V+ E
Sbjct: 100 SREHSG--SVVAGSPAVPDRNVAEALRGCAVWVRRADFPAPADDEFYWVDLIG-SIVVNE 156
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L + V EG E RLV PFVE V
Sbjct: 157 QQETLGTVAGLIDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKS 197
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 198 VDVAGKRIVV 207
>gi|410921198|ref|XP_003974070.1| PREDICTED: UDP-N-acetylhexosamine pyrophosphorylase-like [Takifugu
rubripes]
Length = 506
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 30/251 (11%)
Query: 355 ATELMNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVH 414
A E+ + +K E M + ++ LG R ++ + + ++ G +SE K A++L+
Sbjct: 54 AMEMSSNSKNEKMDTRMEPVPREVLGSVTRDREGL--KTWEQSGLQCISESKVAVLLLAG 111
Query: 415 NSEEGNE---CDP----------HSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPL 461
+G DP H + + A + L L Q L Q+ + +P
Sbjct: 112 G--QGTRLGVSDPKGMYDVGLPSHKTLFQIQAERILKL-QQLAGQKQK-----TKCCIPW 163
Query: 462 VLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWET 521
++ M+ E F +D+F D K + F ++ LP + + KIL++ +
Sbjct: 164 YIMTSGRTMEATEHFFSKHDYFGLDKKDIIFFQQGMLPAMDYNG------KILLERKGKV 217
Query: 522 LQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKSCGADIG 580
AP G+GG++ L ++ +++ G+E I + C N + + F+GF GAD G
Sbjct: 218 SMAPDGNGGLYRALGRQGVLDDMERRGIELIHVYCVDNILVKVADPAFIGFCVQKGADCG 277
Query: 581 FQISEYAKHSE 591
++ E +E
Sbjct: 278 AKVVEKTNPTE 288
>gi|23335825|ref|ZP_00121057.1| COG0806: RimM protein, required for 16S rRNA processing
[Bifidobacterium longum DJO10A]
gi|189439917|ref|YP_001954998.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|189428352|gb|ACD98500.1| RimM protein for 16S rRNA processing [Bifidobacterium longum
DJO10A]
gi|291517401|emb|CBK71017.1| 16S rRNA processing protein RimM [Bifidobacterium longum subsp.
longum F8]
Length = 204
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHGDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEADDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|354614185|ref|ZP_09032066.1| Ribosome maturation factor rimM [Saccharomonospora paurometabolica
YIM 90007]
gi|353221467|gb|EHB85824.1| Ribosome maturation factor rimM [Saccharomonospora paurometabolica
YIM 90007]
Length = 179
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL-GRE---TIREVKLIDGREHPGQKSWI 142
HG++GE++V TD + G R+ VL GR RE+ + R H G+ +
Sbjct: 21 HGIRGELAVDVHTD-------SLGDRFAEDTVLTGRARNGDTRELTVAAVRPHGGR--LL 71
Query: 143 LTFEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETGELVGTVVN 201
+ F + A L G LLA P LED EFY +L G+R + + G VGTV
Sbjct: 72 VRFAEVPDRSAAEELRGLRLLAEADALPPLEDPDEFYDHELEGLRAELPD-GTAVGTVRG 130
Query: 202 VFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQI 261
V ++ +LL + D SG V +PFV +VP VD+ G + +
Sbjct: 131 VVHAPGGELLVL--------------------DVSGTEVLVPFVAALVPHVDVAGGRLVV 170
Query: 262 TPPKGLLE 269
PP+GLL+
Sbjct: 171 DPPEGLLD 178
>gi|300704719|ref|YP_003746322.1| 16S rRNA processing protein [Ralstonia solanacearum CFBP2957]
gi|299072383|emb|CBJ43721.1| 16S rRNA processing protein [Ralstonia solanacearum CFBP2957]
Length = 213
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L GT WL+ G T+ R + +
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPHGDAEALLHA--GTWWLKPAA-GAPTVSSDWRVLPVGT 99
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G + D P D EFY DL+G VV E
Sbjct: 100 SREHSG--SVVAGSPAVPDRNVAEALRGCAVWISRADFPAPADDEFYWVDLIGSTVV-NE 156
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L + V EG E RLV PFVE V
Sbjct: 157 QQESLGTVAGLLDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKS 197
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 198 VDVAGKRIVV 207
>gi|254510633|ref|ZP_05122700.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
gi|221534344|gb|EEE37332.1| 16S rRNA processing protein RimM [Rhodobacteraceae bacterium KLH11]
Length = 167
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + +G++GE+ +K PE + +P T + R +K
Sbjct: 3 DLICVGSIAGSYGVRGEVRLKSFCAVPEDIEGYSPLTDEAGAKRFPVVLTRTIK------ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G++T E+A L G L AR P L D EFY DL+G+ V G
Sbjct: 57 ----NGFAARLGGVETKEEADALSGLRLFARRDQLPSLPDDEFYHTDLIGLE-VYDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V +V N GA DLL + G S+ V +PF + VP VD+
Sbjct: 112 LLGRVKSVQNHGAADLLE---------LHGPGLKST---------VLLPFTLDAVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
+ + PP+GLL
Sbjct: 154 DKGRIIADPPEGLL 167
>gi|408420799|ref|YP_006762213.1| ribosome maturation factor RimM [Desulfobacula toluolica Tol2]
gi|405108012|emb|CCK81509.1| RimM: ribosome maturation factor [Desulfobacula toluolica Tol2]
Length = 170
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D +G V VHGL G + V F E T R + + E R+ K++ H
Sbjct: 5 DSFTIGQVTGVHGLAGNLKV---WSFAESIDTFCPGRSVLLKSEDEEDGRQYKIVKATAH 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+K IL EG+DT E A L+G +L PE E+ +Y +DL+G+ V E G
Sbjct: 62 --KKGIILFLEGVDTRELAEDLIGKKILIDRDQLPEPEEDTWYWQDLLGLNVFDHEKG-F 118
Query: 196 VGTVVNVFNSGANDLLHV 213
+G + ++F +GAND+L V
Sbjct: 119 IGKITDIFPTGANDVLVV 136
>gi|425735384|ref|ZP_18853698.1| 16S rRNA-processing protein RimM [Brevibacterium casei S18]
gi|425479790|gb|EKU46962.1| 16S rRNA-processing protein RimM [Brevibacterium casei S18]
Length = 166
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 30/183 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HG++GE +V+ TD P+ R PG + +G E+ L R H + +L F+
Sbjct: 12 HGIRGEFTVEVRTDRPDERLV-PGMTYATDPDIG-----ELTLTSARWH--RDRLLLAFD 63
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSG 206
+ +A + +TLL E D ++ + DL+G++ + + E VG +V+V N
Sbjct: 64 EVPDRTRAEE-IRNTLLLAEQDDEADDEEAWLLDDLIGLKAFVGD--EQVGEIVDVTNGT 120
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKG 266
A DLLH+ G V IPFV EIVP VD + + +TPP G
Sbjct: 121 AQDLLHL-------------------RHTDGHEVLIPFVTEIVPEVDTDAGRIALTPPAG 161
Query: 267 LLE 269
LL+
Sbjct: 162 LLD 164
>gi|209573748|sp|B3DTN1.2|RIMM_BIFLD RecName: Full=Ribosome maturation factor RimM
Length = 199
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF VL + +++G
Sbjct: 8 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDGETEYIVEG-S 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG+D A L G L D + LE E+Y +DL+G+ + E
Sbjct: 60 RTFKDRWILKLEGVDDRNAAEALNGVELYGEADDAEDMLEADEWYPKDLIGLEARLVEGN 119
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG VV+V +S A LL + V + G +S D + +PFVE
Sbjct: 120 GLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVVEKTALVPFVE 174
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D+ + + + PP GL+
Sbjct: 175 ALVPDIDLEEQYLTLDPPGGLI 196
>gi|405979913|ref|ZP_11038254.1| 16S rRNA processing protein RimM [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391288|gb|EJZ86352.1| 16S rRNA processing protein RimM [Actinomyces turicensis
ACS-279-V-Col4]
Length = 174
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 32/189 (16%)
Query: 81 GYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKS 140
G + HGL+GE V+ +D PE+ PG + VLG E E+ + R H +
Sbjct: 6 GIIGPAHGLRGEAMVEVRSDDPEI--WAPGFVF---GVLG-EPEMELTVRSARMH--KDR 57
Query: 141 WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVV 200
++ FE + T EQ L G LL E + E+ +Y L G VM + G +GTV
Sbjct: 58 LLVGFEELSTREQVEALRGKKLLVEETE----EEDAWYPHQLKGCVAVMPD-GATLGTVT 112
Query: 201 NVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQ 260
+ A DLL V SG V +PFVEE+VP VD+ + +
Sbjct: 113 GLQFGMAQDLLLV-------------------KPVSGATVMVPFVEELVPEVDVENKRVT 153
Query: 261 ITPPKGLLE 269
+TPP GL +
Sbjct: 154 LTPPPGLFD 162
>gi|404497718|ref|YP_006721824.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
gi|418067999|ref|ZP_12705323.1| 16S rRNA processing protein RimM [Geobacter metallireducens RCH3]
gi|109893018|sp|Q39RN7.1|RIMM_GEOMG RecName: Full=Ribosome maturation factor RimM
gi|78195320|gb|ABB33087.1| 16S rRNA processing protein RimM [Geobacter metallireducens GS-15]
gi|373557778|gb|EHP84164.1| 16S rRNA processing protein RimM [Geobacter metallireducens RCH3]
Length = 173
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 33/198 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL---GRETIREVKLIDG 132
D V +G V + HG++G++SV P F+ + L Q + G + +E +D
Sbjct: 6 DLVLLGKVVATHGIRGQLSVVP--------FSGEFSTILSMQTVYLSGPDNRKESFEVD- 56
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R + +LT +G + + LVG L AR P L++GEFY DL+G+ V E
Sbjct: 57 RAAVHRNRVLLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSE- 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G +G + + +G+ND V V+ E R IP +E+IV V
Sbjct: 116 GLSLGRIEEIIATGSND---------VYVVRDGE-----------REYLIPALEDIVVGV 155
Query: 253 DMNGREMQITPPKGLLEL 270
D++ M ++P +GLL+L
Sbjct: 156 DLDKGIMTVSPTEGLLDL 173
>gi|345561217|gb|EGX44313.1| hypothetical protein AOL_s00193g41 [Arthrobotrys oligospora ATCC
24927]
Length = 515
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 457 ASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK 516
A +P ++ + E+ F+ ND+F + +V F E+ LP +S N KI+++
Sbjct: 185 AQIPWYIMTSGPTRKPTEEYFVKNDYFGLEKNQVVFFEQGVLPCIS------NDGKIILE 238
Query: 517 SPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQ-ICTANPRNAIGNSMFLGFVKSC 575
S + AP G+GG+++ L I+K+L+ G+E++ C N + + +F+GF
Sbjct: 239 SRSKVAVAPDGNGGIYAALDKSGILKDLETRGIEHVHAYCVDNCLVKVADPVFIGFSALK 298
Query: 576 GADIGFQ----------------------ISEYAKHSEERFNTMLSMN--VMK----KLT 607
G I + + EY++ E + N ++K +
Sbjct: 299 GVSIATKVVRKRNAKESVGLILLKNGKPDVVEYSEIDTEMTEELDPENKELLKFRAANIV 358
Query: 608 NHINKLEFYAT-----PKLNSHVEKVDKEFID------VIPAAPNSYELRSSIYSCLNAC 656
NH EF T L H+ + ++D V P PN +L ++
Sbjct: 359 NHYYSTEFLNTIPEWSNNLPHHIARKKIPYLDTETGEQVKPEKPNGIKLEQFVFDVFPLL 418
Query: 657 SLDKVCVMEIT 667
+LDK +E+
Sbjct: 419 ALDKFACLEVA 429
>gi|398412696|ref|XP_003857666.1| hypothetical protein MYCGRDRAFT_106864 [Zymoseptoria tritici
IPO323]
gi|339477551|gb|EGP92642.1| hypothetical protein MYCGRDRAFT_106864 [Zymoseptoria tritici
IPO323]
Length = 514
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 59/285 (20%)
Query: 430 ESTANKSLALLQTLLSDDQRFVKIENRAS---------MPLVLVLPALEMQMLEKLFLDN 480
E ++KSL LQ +R K+++ AS +P ++ + + F +N
Sbjct: 159 ELPSHKSLFQLQA-----ERIWKLQHLASKEHNKEEVVIPWYIMTSGPTRKPTQDFFEEN 213
Query: 481 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNI 540
+F V F E+ LP ++ + KIL++S + AP G+GG++S L I
Sbjct: 214 KYFGLSRHNVIFFEQGVLPCITM------EGKILLESKHKVAVAPDGNGGLYSALIGSGI 267
Query: 541 IKNLDELGVEYIQ-ICTANPRNAIGNSMFLGFVKSCGADIGFQ----------------- 582
+ ++++ GV++I C N + + F+GF G I +
Sbjct: 268 VGDMEKRGVQHIHAYCVDNCLVRVADPTFIGFSAEKGVSIATKVVRKRNAKESVGLIVQK 327
Query: 583 -----ISEYAKHSEERFNTMLSMNV------MKKLTNHINKLEFYAT-----PKLNSHVE 626
+ EY++ EE + N + NH EF + KL HV
Sbjct: 328 NGKPDVVEYSEIDEETAEAKDAKNSELLKFRAANIVNHYYSFEFLNSIPAWMHKLPHHVA 387
Query: 627 K-----VDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEI 666
K VD++ V P PN +L ++ C +DK ME+
Sbjct: 388 KKKIPTVDEKGAPVKPEKPNGIKLEQFVFDCFPFLEMDKFACMEV 432
>gi|254472163|ref|ZP_05085563.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
gi|211958446|gb|EEA93646.1| 16S rRNA processing protein RimM [Pseudovibrio sp. JE062]
Length = 185
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 32/196 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + + + + HG++GE+ VKP D P L F G ++ + R+ K+ R
Sbjct: 7 DRILMAQIGAAHGIRGEVRVKPFGDDP-LSFGDYG------KLESEDGSRKFKVKRARV- 58
Query: 136 PGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPELED-GEFYTRDLVGMRVVMKETG 193
QK+ ++T FEG++ +A L G L PE ED EFY DL+G++ + E
Sbjct: 59 --QKNVVVTKFEGVNDRNEAEALNGLKLYIPRERLPETEDEDEFYHSDLIGLKA-LDENK 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E +GTV+ + + GA DL+ + + SG+ + PF + +VP+++
Sbjct: 116 EQIGTVLALLDFGAGDLIEI-------------------APKSGKSLLFPFTKAVVPVIN 156
Query: 254 MNGREMQITPPKGLLE 269
+ +++ P+G E
Sbjct: 157 LKEGFVEVHAPEGFYE 172
>gi|159036842|ref|YP_001536095.1| 16S rRNA-processing protein RimM [Salinispora arenicola CNS-205]
gi|209573593|sp|A8M679.1|RIMM_SALAI RecName: Full=Ribosome maturation factor RimM
gi|157915677|gb|ABV97104.1| 16S rRNA processing protein RimM [Salinispora arenicola CNS-205]
Length = 180
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 30/199 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRF-------TTPGTRWLRQQVLGRETIREVKLIDG 132
VG + HG++GE++V+ TD PE RF T PG + E+ +
Sbjct: 4 VGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGAN-VPASPGAYRVPSELTVETA 62
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKE 191
R H G + ++ FEG+ A L G+ + D D E F+ LVG+ VV
Sbjct: 63 RWHQG-RLLLVAFEGVLDRNVAEALRGTFVGVDRADVTAPTDPEEFHDHQLVGLAVVT-S 120
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
GE +G +V + ++ A DLL + R V IPFV IVP
Sbjct: 121 AGERLGEIVRIDHAPAADLLVL-------------------RRPGDRDVLIPFVRAIVPE 161
Query: 252 VDMNGREMQITPPKGLLEL 270
VD+ G + + PP GLL+L
Sbjct: 162 VDLAGGRVVVDPPGGLLDL 180
>gi|433635973|ref|YP_007269600.1| Putative 16s rRNA processing protein RimM [Mycobacterium canettii
CIPT 140070017]
gi|432167566|emb|CCK65086.1| Putative 16s rRNA processing protein RimM [Mycobacterium canettii
CIPT 140070017]
Length = 176
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 28/195 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKLIDG-REHP 136
VG V HG+ GE+ V+ TD P RF PGTR + G E +I+ REH
Sbjct: 5 VGRVVKSHGVTGEVVVEIRTDDPADRFA-PGTRLRAKGPFDGGAEGSVVSYVIESVREHG 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGEL 195
G+ ++ G+ + A L GS + D P +++ + +Y LVG+ +V TG+
Sbjct: 64 GR--LLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGL-MVQTATGQG 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG V V ++ A +LL V S+E V +PFV IV V ++
Sbjct: 121 VGVVTEVVHTAAGELLAVK--------RDSDE------------VLVPFVRAIVTSVSLD 160
Query: 256 GREMQITPPKGLLEL 270
++I PP GLL L
Sbjct: 161 DGIIEIDPPHGLLNL 175
>gi|347532237|ref|YP_004839000.1| 16S rRNA-processing protein RimM [Roseburia hominis A2-183]
gi|345502385|gb|AEN97068.1| 16S rRNA-processing protein RimM [Roseburia hominis A2-183]
Length = 173
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 39/202 (19%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKLIDGR 133
D + VG + + HG++GE+ V P+TD P RF + L+ +L G+E +
Sbjct: 3 DLLQVGVITTTHGVRGEVKVFPTTDDPA-RF-----KKLKNVILDTGKEKLE-------L 49
Query: 134 EHPGQKSW----ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
E G K + IL F+GID + +L + +L+ E++ DL+GM+V
Sbjct: 50 EIAGVKFFKNMVILKFKGIDDINDVEKYRKKSLYVTRENAVKLKKDEYFIADLIGMKVST 109
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
E GE +GT+ +V +GAND+ +++ +G E V IP + + +
Sbjct: 110 DE-GEELGTLSDVMQTGANDVY------VISMTDGEE-------------VLIPAIRDCI 149
Query: 250 PIVDMNGREMQITPPKGLLELN 271
VD+ +M + GLL++N
Sbjct: 150 RDVDVEQGQMCVHLLPGLLDIN 171
>gi|17545653|ref|NP_519055.1| 16S rRNA-processing protein RimM [Ralstonia solanacearum GMI1000]
gi|21362859|sp|Q8Y0V9.1|RIMM_RALSO RecName: Full=Ribosome maturation factor RimM
gi|17427946|emb|CAD14636.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
GMI1000]
Length = 184
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L + T WL+ G + R + +
Sbjct: 14 DLVEVGYVGGAYGVRGWIKVQPHGDAEALLHAS--TWWLKPAA-GAPAVSSDWRVLPVGT 70
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G T+ R + P D EFY DL+G VV E
Sbjct: 71 SREHSG--SVVAGSPAVPDRNVAEALRGCTVWVRRAEFPAPADDEFYWVDLIGSTVV-NE 127
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L + V EG E RLV PFVE V
Sbjct: 128 QQETLGTVAGLIDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKS 168
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 169 VDVAGKHIVV 178
>gi|308177296|ref|YP_003916702.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
gi|307744759|emb|CBT75731.1| 16S rRNA-processing protein RimM [Arthrobacter arilaitensis Re117]
Length = 180
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 36/195 (18%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI---REVKLIDGREHP 136
V + HG++GE++ + TD P+ RFT+ G E I VK + +
Sbjct: 5 VARIGKPHGIRGEVTAQVMTDTPDERFTS-----------GEELIVVDGPVKTLTVKSAR 53
Query: 137 GQKS-WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K+ +L+F+ I+ QA L G+ L + PE + E+Y +L+ ++V++ GE
Sbjct: 54 WNKTILLLSFKEINDRNQAETLRGARLEIDVSEEPEDDSDEWYEHELLDLKVMLD--GEQ 111
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG + + + A DLL V E SE G+ +++PFV+E VP +D
Sbjct: 112 VGVITALRTNPAQDLL---------VFENSE----------GQEIYLPFVDEFVPEIDPE 152
Query: 256 GREMQITPPKGLLEL 270
+ ITPP GLL L
Sbjct: 153 AGIVVITPPAGLLTL 167
>gi|400755879|ref|YP_006564247.1| 16S rRNA processing protein RimM [Phaeobacter gallaeciensis 2.10]
gi|398655032|gb|AFO89002.1| putative 16S rRNA-processing protein RimM [Phaeobacter
gallaeciensis 2.10]
Length = 167
Score = 67.0 bits (162), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 30/190 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQ 138
VG + +G++GE+ +K PE + +P + Q +R +K
Sbjct: 7 VGAISGSYGVRGEVRLKSFCAMPEDIEDYSPLSTEDGSQTYTITLVRAIK---------- 56
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+ GI+T EQA L G L A P L D E+Y DL+G+ V G L+GT
Sbjct: 57 NGFTARIGGIETKEQADALKGIRLFAPRDRLPSLPDDEYYHTDLMGLE-VYDTGGTLLGT 115
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V N GA+DLL + A + V +PF VP VD+
Sbjct: 116 VKSVQNHGASDLLEITI------------------PADSKTVLLPFTLAAVPTVDLAAGR 157
Query: 259 MQITPPKGLL 268
+ PP+GL
Sbjct: 158 IIADPPEGLF 167
>gi|392946620|ref|ZP_10312262.1| 16S rRNA processing protein RimM [Frankia sp. QA3]
gi|392289914|gb|EIV95938.1| 16S rRNA processing protein RimM [Frankia sp. QA3]
Length = 190
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 40/213 (18%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI-REVK 128
T S + + VG + HG++G+++++ TD P+ RF VLGRE +
Sbjct: 7 TPTSVAEAIVVGRIGRPHGVRGDVTIEVRTDVPQRRFAVGA-------VLGREGGGAPLT 59
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPL--VGSTLLAREGDRP--ELEDGE------FY 178
+ H G+ ++ F+G++ A L V T+ A E P E ED E ++
Sbjct: 60 VTAAHWHSGR--LLIRFDGVEDRNAAEALRDVLLTIDAAEAGPPVDEDEDAEGDAGDTWW 117
Query: 179 TRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGR 238
RDLVG+ V G +G V +V ++ A DLL +V G E
Sbjct: 118 DRDLVGLEAVTT-AGAPLGRVTDVIHAPAGDLL------AVGRPGGGEHL---------- 160
Query: 239 LVWIPFVEEIVPIVDMNGREMQITPPKGLLELN 271
+PFV EIVP VD + + PP GLL+L+
Sbjct: 161 ---VPFVREIVPTVDPAAGRIVVDPPPGLLDLD 190
>gi|266625654|ref|ZP_06118589.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
gi|288862441|gb|EFC94739.1| 16S rRNA processing protein RimM [Clostridium hathewayi DSM 13479]
Length = 170
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 33/194 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRETIREVKL-IDGREHP 136
VG + S HG++GE+ V P+TD RF + L+Q +L G+E ++KL I+G +
Sbjct: 7 VGVISSTHGVKGEVKVFPTTD-DAARF-----KKLKQVILDTGKE---QLKLEIEGVKF- 56
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ IL F+G DT+E G +L +L E + DL+G++VV E GE
Sbjct: 57 FKNMVILKFKGYDTIEDIEKYKGKDILVTRDQAVKLGPDENFIVDLIGLKVV-TEDGEPF 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GT+ +V +GAND+ V A G+ V P + E + VD+
Sbjct: 116 GTLTDVIKTGANDVYEV-------------------KTAEGKEVLFPAIRECIRNVDLEA 156
Query: 257 REMQITPPKGLLEL 270
+ + GLL+L
Sbjct: 157 GVVTVHIMDGLLDL 170
>gi|358421775|ref|XP_003585121.1| PREDICTED: UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Bos
taurus]
gi|359070762|ref|XP_002691757.2| PREDICTED: UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Bos
taurus]
Length = 504
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 455 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVS---RSPTEQNKF 511
R ++P ++ ++ K F ++D F D V E+ LP VS R+ E+ K
Sbjct: 159 TRCTVPWYIMTSEFTLEPTAKFFKEHDFFHLDPNNVIMFEQRMLPAVSFDGRAILER-KD 217
Query: 512 KILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLG 570
K+ M AP G+GG++S L H I+++++ GVE++ + C N + + +F+G
Sbjct: 218 KVAM--------APDGNGGLYSALEDHQILEDMERRGVEFVHVYCVDNILVRLADPLFIG 269
Query: 571 FVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNH 609
F GAD G ++ E A + EE + ++ + ++ +
Sbjct: 270 FCVLRGADCGAKVVEKA-YPEEPVGVVCQVDGVPQVVEY 307
>gi|339636841|emb|CCC15647.1| ribosome maturation factor RimM [Lactobacillus pentosus IG1]
Length = 174
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D+ VG + + HG++GE+ V TDFPE RF L + V + RE
Sbjct: 1 MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLVLFKSPDATTGGITVTVAKARE 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
G + LTFEG+D + G T+ +L GE+Y +VG+ VV + E
Sbjct: 61 QKGL--YFLTFEGLDNINDVEGYKGWTIKVPAEALHQLPAGEYYYHQIVGLDVVTTDD-E 117
Query: 195 LVGTVVNVFNSGANDL 210
+GT+ + + GAND+
Sbjct: 118 PLGTIKEILSPGANDV 133
>gi|357410924|ref|YP_004922660.1| 16S rRNA-processing protein RimM [Streptomyces flavogriseus ATCC
33331]
gi|320008293|gb|ADW03143.1| 16S rRNA processing protein RimM [Streptomyces flavogriseus ATCC
33331]
Length = 210
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAGTGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L +TLL E D EL D EFY L+ + VV+ + G +G
Sbjct: 59 -LLLRFEGVRDRSAAEAL-RNTLLIAEVDPAELPDDPEEFYDHQLMDLDVVLGD-GTEIG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + + DL V +GSE V IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPSQDLF------IVERPDGSE-------------VMIPFVEEIVTEIDLEEQ 156
Query: 258 EMQITPPKGLLE 269
+ I PP GL++
Sbjct: 157 RIVIAPPPGLID 168
>gi|354806996|ref|ZP_09040473.1| 16S rRNA processing protein RimM [Lactobacillus curvatus CRL 705]
gi|354514501|gb|EHE86471.1| 16S rRNA processing protein RimM [Lactobacillus curvatus CRL 705]
Length = 176
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ VG + + HG++GE+ V +TDF + RF + ++ V + +VK+ R+H
Sbjct: 5 YYQVGKIVNTHGIRGEVRVIATTDFTDSRFK----KGVQLAVEMPNGLVDVKVAAMRQH- 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ ++L FEG+ + L +A +LED EFY D++G+ VV + G
Sbjct: 60 -KQFYLLQFEGMGNINDVEQFKDHNLKIAASQREDDLEDDEFYYGDIIGLEVVEEADGTS 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G V + + G ND V VI+ SD + +PF++ +V +D+
Sbjct: 119 YGKVSEIIDPGPND---------VWVIK-----RRGRSD-----LLLPFLKSVVKKIDIE 159
Query: 256 GREMQITPPKGLLE 269
+ + P+GL++
Sbjct: 160 AGKAYVEVPEGLID 173
>gi|23464908|ref|NP_695511.1| Rim-like protein involved in efficient processing of 16S rRNA
[Bifidobacterium longum NCC2705]
gi|23325500|gb|AAN24147.1| possible Rim-like protein involved in efficient processing of 16S
rRNA [Bifidobacterium longum NCC2705]
Length = 207
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 65 QEIVETSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
Q+ + L+ + V + GL+GE++V+ TD PE RF VL +
Sbjct: 3 QQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDG 55
Query: 125 REVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLV 183
+++G + WIL EG+D A L G L D + LE E+Y +DL+
Sbjct: 56 ETEYIVEG-SRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLI 114
Query: 184 GMRVVMKE-------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236
G+ + E G++VG VV+V +S A LL + V + G +S D
Sbjct: 115 GLEARLVEGNGLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVV 169
Query: 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKGLL 268
+ +PFVE +VP +D+ + + + PP GL+
Sbjct: 170 EKTALVPFVEALVPDIDLEEQYLTLDPPGGLI 201
>gi|359420963|ref|ZP_09212894.1| ribosome maturation factor RimM [Gordonia araii NBRC 100433]
gi|358243236|dbj|GAB10963.1| ribosome maturation factor RimM [Gordonia araii NBRC 100433]
Length = 178
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 35/203 (17%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPG-TRWLRQQVLG--RETIREVKLID 131
+D V +G V HG++GE+ V TD P+ RF R L + G R +E +
Sbjct: 1 MDLV-IGRVIKPHGVRGELVVDIRTDAPDERFAAGAVVRGLLPRAKGAHRSKEQEFTITA 59
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLL-----AREGDRPELEDGEFYTRDLVGMR 186
R H G+ +++ +G+ A L G + GD P+ EFY +L+G+
Sbjct: 60 ARNHSGR--LLVSLDGVADRTAADELRGVLFVIDAAEVDSGDDPD----EFYDHELIGLP 113
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V TG VG V +V + ++DLL A ++A D GR + IPFV
Sbjct: 114 -VRTVTGADVGQVADVIHLPSSDLL----------------AVTAADD--GREILIPFVT 154
Query: 247 EIVPIVDMNGREMQITPPKGLLE 269
IVP V + I PP GLLE
Sbjct: 155 AIVPTVS-RAEGIVIDPPDGLLE 176
>gi|257886946|ref|ZP_05666599.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257898133|ref|ZP_05677786.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
gi|424766388|ref|ZP_18193741.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1337RF]
gi|431033217|ref|ZP_19491063.1| ribosome maturation factor rimM [Enterococcus faecium E1590]
gi|431757036|ref|ZP_19545667.1| ribosome maturation factor rimM [Enterococcus faecium E3083]
gi|431762294|ref|ZP_19550856.1| ribosome maturation factor rimM [Enterococcus faecium E3548]
gi|257823000|gb|EEV49932.1| ribosome maturation factor rimM [Enterococcus faecium 1,141,733]
gi|257836045|gb|EEV61119.1| ribosome maturation factor rimM [Enterococcus faecium Com15]
gi|402410635|gb|EJV43031.1| 16S rRNA processing protein RimM [Enterococcus faecium TX1337RF]
gi|430564318|gb|ELB03502.1| ribosome maturation factor rimM [Enterococcus faecium E1590]
gi|430619325|gb|ELB56152.1| ribosome maturation factor rimM [Enterococcus faecium E3083]
gi|430624986|gb|ELB61636.1| ribosome maturation factor rimM [Enterococcus faecium E3548]
Length = 174
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + + G++GE+ V +TDFPE R+ L Q G+ + E+ + R+H
Sbjct: 3 EYLNVGKIVNTQGIKGEVRVISTTDFPEERYKKGTVLTLFQD--GKAPV-ELTVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+L+FEG ++ L + + +L + EFY +++G+RVV +E G
Sbjct: 60 KNFD--LLSFEGHPSINDVEKYRDGILKVSKDNSVDLAENEFYYHEIIGLRVV-EEDGTE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + + GAND V V++ ++A + +P++ +V VD+
Sbjct: 117 LGKVKEILSPGAND---------VWVVQRPKKAD----------ILLPYIASVVKEVDLE 157
Query: 256 GREMQITPPKGLLE 269
+++ P+GL++
Sbjct: 158 AGVVRVEIPEGLID 171
>gi|339627522|ref|YP_004719165.1| 16S rRNA processing protein RimM [Sulfobacillus acidophilus TPY]
gi|379008104|ref|YP_005257555.1| 16S rRNA processing protein RimM [Sulfobacillus acidophilus DSM
10332]
gi|339285311|gb|AEJ39422.1| 16S rRNA processing protein RimM [Sulfobacillus acidophilus TPY]
gi|361054366|gb|AEW05883.1| 16S rRNA processing protein RimM [Sulfobacillus acidophilus DSM
10332]
Length = 179
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVK-LIDGREHP 136
V VG + + HG+ G V P+TDFPE RW + Q + + + + +I R P
Sbjct: 12 VLVGQITAPHGIDGTFRVYPTTDFPE--------RWRQWQSVVIDRLGGSRAVIQSRLTP 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+L EGI T + A L G+ ++ E P+L GE+Y L+G+ VV TG ++
Sbjct: 64 TMV--LLKVEGIQTRDAAEALRGALVMVPETALPDLPPGEYYWHQLIGLTVVEVGTGRVL 121
Query: 197 GTVVNVFNSGA 207
GT+ +V +GA
Sbjct: 122 GTLAHVLRTGA 132
>gi|90109245|pdb|2F1L|A Chain A, Crystal Structure Of A Putative 16s Ribosomal Rna
Processing Protein Rimm (Pa3744) From Pseudomonas
Aeruginosa At 2.46 A Resolution
Length = 187
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D V +G + SV+G++GE+ V FT P L R+ L R+ IR+ +L+ G
Sbjct: 19 DLVVIGKIVSVYGIRGEVKV--------YSFTDPLDNLLDYRRWTLRRDGEIRQAELVRG 70
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R H K +G+D E+AR G + + P LE+GE+Y L G++V+ +
Sbjct: 71 RLH--GKVLAAKLKGLDDREEARTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVI-DQG 127
Query: 193 GELVGTVVNVFNSGANDL 210
+L+G + ++ +GAND+
Sbjct: 128 RQLLGVIDHLLETGANDV 145
>gi|296481969|tpg|DAA24084.1| TPA: UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Bos
taurus]
Length = 508
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 455 NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVS---RSPTEQNKF 511
R ++P ++ ++ K F ++D F D V E+ LP VS R+ E+ K
Sbjct: 159 TRCTVPWYIMTSEFTLEPTAKFFKEHDFFHLDPNNVIMFEQRMLPAVSFDGRAILER-KD 217
Query: 512 KILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLG 570
K+ M AP G+GG++S L H I+++++ GVE++ + C N + + +F+G
Sbjct: 218 KVAM--------APDGNGGLYSALEDHQILEDMERRGVEFVHVYCVDNILVRLADPLFIG 269
Query: 571 FVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTNH 609
F GAD G ++ E A + EE + ++ + ++ +
Sbjct: 270 FCVLRGADCGAKVVEKA-YPEEPVGVVCQVDGVPQVVEY 307
>gi|306831607|ref|ZP_07464765.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|306833750|ref|ZP_07466876.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304424087|gb|EFM27227.1| 16S rRNA processing protein RimM [Streptococcus bovis ATCC 700338]
gi|304426392|gb|EFM29506.1| 16S rRNA processing protein RimM [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 182
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 29/204 (14%)
Query: 67 IVETSASG--LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI 124
+V+T SG +++ +VG + + GLQGE+ V TDF E RF G++ + +
Sbjct: 1 MVKTKLSGVNMNYFNVGKIVNTQGLQGEMRVLSVTDFTEERFKK-GSKL----AIFDDKD 55
Query: 125 REVKLIDGREHPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLV 183
R + ++ H QK++ I+ F+G+ + G TL E + +L+DGEFY +++
Sbjct: 56 RFIIEVEIASHRKQKNFDIVKFKGMYHINDIEKYKGCTLKVAEENLSDLDDGEFYYHEII 115
Query: 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
G+ V E L+G V + GAND+ V R + +P
Sbjct: 116 GLDVY--ENDVLIGQVKEILQPGANDVWVV-------------------KRKGKRDLLLP 154
Query: 244 FVEEIVPIVDMNGREMQITPPKGL 267
++ +V VD+ G + + +GL
Sbjct: 155 YIPPVVLNVDVAGNRIDVDVLEGL 178
>gi|217076195|ref|YP_002333911.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
gi|419760755|ref|ZP_14287023.1| 16S rRNA processing protein RimM [Thermosipho africanus H17ap60334]
gi|226734093|sp|B7IEQ6.1|RIMM_THEAB RecName: Full=Ribosome maturation factor RimM
gi|217036048|gb|ACJ74570.1| 16S rRNA processing protein RimM [Thermosipho africanus TCF52B]
gi|407514119|gb|EKF48970.1| 16S rRNA processing protein RimM [Thermosipho africanus H17ap60334]
Length = 178
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 22/144 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE--------TIREVKL 129
V V + HGL+GE+ + P T+FPE+ L + L E T+ ++L
Sbjct: 13 VAVAILGKTHGLKGELKLHPFTNFPEI------IESLEEIFLYNEKTKQFMVATVENLRL 66
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
DG +I+ G++ VE AR VGS + + + P L E+Y ++VG +V+
Sbjct: 67 ADG-------YYIIKLNGVENVENARKFVGSKVYINKDELPNLSKDEYYFFEIVGSQVI- 118
Query: 190 KETGELVGTVVNVFNSGANDLLHV 213
E+G+++G V V +G+ND++ V
Sbjct: 119 DESGKVLGVVDEVIQTGSNDVIVV 142
>gi|48474469|sp|Q8G7F9.2|RIMM_BIFLO RecName: Full=Ribosome maturation factor RimM
Length = 202
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 21/202 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
L+ + V + GL+GE++V+ TD PE RF VL + +++G
Sbjct: 8 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEP-------DSVLYSQDGETEYIVEG-S 59
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVMKE-- 191
+ WIL EG+D A L G L D + LE E+Y +DL+G+ + E
Sbjct: 60 RTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARLVEGN 119
Query: 192 -----TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
G++VG VV+V +S A LL + V + G +S D + +PFVE
Sbjct: 120 GLGLPAGQVVGKVVDVVDSPAQSLLKIRLTEPV--VTGQ---NSKGEDVVEKTALVPFVE 174
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
+VP +D+ + + + PP GL+
Sbjct: 175 ALVPDIDLEEQYLTLDPPGGLI 196
>gi|209573745|sp|Q1GYT7.2|RIMM_METFK RecName: Full=Ribosome maturation factor RimM
Length = 173
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 36/192 (18%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR------ETIREVKL 129
+ V +G + + +G+ G + V+P+T++ + F RW+ LGR E + ++
Sbjct: 6 ELVIMGRIVAPYGVYGWVKVQPATEYVDSLFDY--GRWM----LGRGDPKQPEQWQSCEV 59
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ H ++ +GID +QA G + + PE E+GE+Y DL+G++V
Sbjct: 60 EKAKVH--NDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELPEPEEGEYYWSDLIGLQVRN 117
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
++ + G VV+VF +GAND+L V++G E RLV PF+ ++V
Sbjct: 118 QQEVDF-GQVVDVFATGANDVL---------VVKGDRE----------RLV--PFIGQVV 155
Query: 250 PIVDMNGREMQI 261
VD +G+ M +
Sbjct: 156 LEVDTDGKTMLV 167
>gi|440694139|ref|ZP_20876777.1| 16S rRNA processing protein RimM [Streptomyces turgidiscabies Car8]
gi|440283909|gb|ELP71109.1| 16S rRNA processing protein RimM [Streptomyces turgidiscabies Car8]
Length = 187
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 30/185 (16%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HG++GE++V+ TD PELR +G TI GR H G+ +L FE
Sbjct: 12 HGIKGEVTVEVRTDEPELRLPPGAVLATDPASVGPLTIET-----GRVHSGR--LLLRFE 64
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGELVGTVVNVFN 204
G+ A L +TLL + D E+ +GE +Y L+ + VV+ + G VG + + +
Sbjct: 65 GVHDRTGAEAL-RNTLLIADVDPEEMPEGEDEYYDHQLMDLDVVLVD-GTEVGRITEISH 122
Query: 205 SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPP 264
+ DL V+E A G V+IPFVEEIV +D+ + I PP
Sbjct: 123 LPSQDLF---------VVE----------RADGSEVYIPFVEEIVVEIDLEKQRAVIDPP 163
Query: 265 KGLLE 269
GL++
Sbjct: 164 PGLID 168
>gi|167032081|ref|YP_001667312.1| 16S rRNA-processing protein RimM [Pseudomonas putida GB-1]
gi|189040848|sp|B0KRI2.1|RIMM_PSEPG RecName: Full=Ribosome maturation factor RimM
gi|166858569|gb|ABY96976.1| 16S rRNA processing protein RimM [Pseudomonas putida GB-1]
Length = 178
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 11/147 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE----GKVKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G++ ++AR L G + P L E+Y LVG++V+ ++
Sbjct: 63 -GSQKGLVVKLKGLEDRDEARLLSGYEICIARSLLPNLAADEYYWYQLVGLKVINQDE-H 120
Query: 195 LVGTVVNVFNSGANDLLHVM-CYSSVN 220
L G V ++ +GAND++ V C S++
Sbjct: 121 LFGKVDHLLETGANDVMVVKPCAGSLD 147
>gi|300692087|ref|YP_003753082.1| 16S rRNA processing protein [Ralstonia solanacearum PSI07]
gi|299079147|emb|CBJ51815.1| 16S rRNA processing protein [Ralstonia solanacearum PSI07]
gi|344170708|emb|CCA83134.1| 16S rRNA processing protein [blood disease bacterium R229]
Length = 213
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L + T WL+ G + R + +
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPLGDAEALLHAS--TWWLKPAA-GAPAVPSDWRVLPVGT 99
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G + R D P D EFY DL+G +V+ E
Sbjct: 100 SREHSG--SVVAGSPAVPDRNVAEALRGCAVWVRRADFPAPADDEFYWVDLIG-SIVVNE 156
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L + V EG E RLV PFVE V
Sbjct: 157 QQETLGTVAGLIDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKS 197
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 198 VDVAGKRIVV 207
>gi|403069209|ref|ZP_10910541.1| 16S rRNA processing protein [Oceanobacillus sp. Ndiop]
Length = 170
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + + HG++GE+ V +DF E RF PG V E ++K+ R H G
Sbjct: 8 IGKIVNTHGIKGEVKVLRISDFDE-RFN-PGEL---VYVFKDEQPIKLKIAAHRIHKGFD 62
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+L FEG + G L E EL++ EFY +++G V + L G +
Sbjct: 63 --LLQFEGYGNINLVESFKGCELKIGEDQLSELDEDEFYYHEIIGCEVFTADERRL-GKI 119
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + GAND+ V SG+ + IP++E++V +D++ R++
Sbjct: 120 KEILSPGANDVWVV-------------------KQESGKDLLIPYIEQVVKNIDIDSRKV 160
Query: 260 QITPPKGLLE 269
I P +GLL+
Sbjct: 161 VIEPMEGLLD 170
>gi|227513454|ref|ZP_03943503.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227524597|ref|ZP_03954646.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
gi|227083327|gb|EEI18639.1| 16S rRNA processing protein RimM [Lactobacillus buchneri ATCC
11577]
gi|227088272|gb|EEI23584.1| 16S rRNA processing protein RimM [Lactobacillus hilgardii ATCC
8290]
Length = 174
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 27/199 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D+ +VG + + GL+GE+ V TDFPE RF T + Q + + +++ R+
Sbjct: 1 MDYYNVGKIVNTQGLKGEVRVIAITDFPEKRFKKGNT--IFAQTEKSKALISLEIDGVRK 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLL--AREGDRPELEDGEFYTRDLVGMRVVMKET 192
H G +L F+G T+ L STLL A +L+ GE+Y ++G+ V E
Sbjct: 59 HKG--FVLLHFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVY--EG 114
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
LVG V + + GAND+ V + +++ +P ++ ++ V
Sbjct: 115 DNLVGQVKEILSPGANDVWVVQRKAKKDLL-------------------LPKIDSVIKEV 155
Query: 253 DMNGREMQITPPKGLLELN 271
D+ ++ + P+GL + N
Sbjct: 156 DLKNHKINVEIPEGLDDAN 174
>gi|404214614|ref|YP_006668809.1| RimM protein, required for 16S rRNA processing [Gordonia sp. KTR9]
gi|403645413|gb|AFR48653.1| RimM protein, required for 16S rRNA processing [Gordonia sp. KTR9]
Length = 177
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GEI V TD PE+RF LR ++ R+ + RE
Sbjct: 1 MDLV-VGRVVKSHGIRGEIVVDVRTDEPEVRFAPNAV--LRGRLPRGAGERDFTITAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETG 193
H G+ +++ G+ A L G+ L P + EFY +L G+ V + + G
Sbjct: 58 HSGR--LLVSLAGVTDRNSADALRGTLFLIDSSQVEPSDDPDEFYDHELEGVPVQLVD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V +V + +LL S GR V +PFV EIVP V
Sbjct: 115 AAVGVVESVLHLPGGELL-------------------SVRTTDGREVLVPFVREIVPSVS 155
Query: 254 MNGREM-QITPPKGLLE 269
RE+ I PP+GLL+
Sbjct: 156 ---RELIVIDPPEGLLD 169
>gi|119357325|ref|YP_911969.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides DSM
266]
gi|166226433|sp|A1BGL8.1|RIMM_CHLPD RecName: Full=Ribosome maturation factor RimM
gi|119354674|gb|ABL65545.1| 16S rRNA processing protein RimM [Chlorobium phaeobacteroides DSM
266]
Length = 167
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D G + GL+GE+ V P TDFPEL + R+ L ++ V ++ +
Sbjct: 1 MDLFLTGTILKPKGLKGEVKVLPVTDFPELFLS-------RKSYLAGKSDASVMPLNVLK 53
Query: 135 HPGQKSWI-LTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
K + L FEG+DT+E+A L G L E + G Y +L+GM+V+
Sbjct: 54 ASLSKGFAWLFFEGVDTLEKAEKLSGMHLFVEEKELARQPTGRAYLHELIGMKVLDGNRY 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E G + ++ A+++ V A+GR + IP VEE V +D
Sbjct: 114 E-AGVISDILKMPAHEVYEV--------------------QANGRKILIPAVEEFVEEID 152
Query: 254 MNGREMQI 261
M GR M +
Sbjct: 153 MAGRYMVV 160
>gi|50955113|ref|YP_062401.1| 16S rRNA-processing protein RimM [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|59798682|sp|Q6AEA0.1|RIMM_LEIXX RecName: Full=Ribosome maturation factor RimM
gi|50951595|gb|AAT89296.1| 16S rRNA processing protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 217
Score = 66.6 bits (161), Expect = 5e-08, Method: Composition-based stats.
Identities = 61/198 (30%), Positives = 88/198 (44%), Gaps = 39/198 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE------TIREVKLIDGR 133
VG + HGL+G I ++ TD P RF PG + Q + +RE++ +G
Sbjct: 22 VGRLTKAHGLKGAIKLELFTDEPGKRFV-PGAVFTLQVPTASKWHGKTLALRELRWYNG- 79
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDR--PELEDGEFYTRDLVGMRVVMKE 191
HP + F+G+D +A LV + L + R P+ ED +Y LVG+
Sbjct: 80 -HP-----VGFFDGVDDRTEAESLVKAILWVNQDVRELPDEEDA-WYDNQLVGLSA--HR 130
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G +VG +V V + DLL A G V +PFV+ IVP
Sbjct: 131 DGAVVGAIVRVDHLPGQDLL--------------------AIKTPGGEVLVPFVKAIVPE 170
Query: 252 VDMNGREMQITPPKGLLE 269
VD+ R + +TPP GL E
Sbjct: 171 VDLAARTVTLTPPPGLFE 188
>gi|423204076|ref|ZP_17190632.1| ribosome maturation factor rimM [Aeromonas veronii AMC34]
gi|404628070|gb|EKB24858.1| ribosome maturation factor rimM [Aeromonas veronii AMC34]
Length = 173
Score = 66.6 bits (161), Expect = 5e-08, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V +G + +V+G++G + V TD E F WL Q RE+++ + H
Sbjct: 5 VVLGTLGTVYGIKGWLKVNSFTDVAEAIFDY--NPWLINQ---NGVWREIQVSSWKRH-- 57
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVG 197
K I +GID E A L + PEL +GEFY RDL+G VV + +L G
Sbjct: 58 NKGLICKLDGIDVREDALALTNVEIGVAADLLPELPEGEFYWRDLIGCSVVTTKGYDL-G 116
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE-IVPIVDMNG 256
V + +G+ND+L V E A A RL IPF+EE ++ +D+
Sbjct: 117 KVTELMETGSNDVLVV------------EANVKDAFGAKERL--IPFLEEQVIKNIDLTA 162
Query: 257 REMQI 261
R +++
Sbjct: 163 RTIEV 167
>gi|309811487|ref|ZP_07705269.1| 16S rRNA processing protein RimM [Dermacoccus sp. Ellin185]
gi|308434538|gb|EFP58388.1| 16S rRNA processing protein RimM [Dermacoccus sp. Ellin185]
Length = 190
Score = 66.6 bits (161), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 89/196 (45%), Gaps = 30/196 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V V + HGL+GE++V+ TD PE RF T G T+R ++ +G
Sbjct: 1 MDDVVVARIGKAHGLKGEVTVQLHTDSPEQRFVPGETFETEPASRGPLTLRLARVHNGLH 60
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+L F+ A L G + ED +Y DL+G VV+ GE
Sbjct: 61 -------LLAFDEAPDRTAAEGLRG--IKLLAEADDLDEDDAWYEEDLLGFDVVV--AGE 109
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG V + + DLL V++G E G + +PFVEEIVP +D
Sbjct: 110 KVGVVKALESREVQDLL---------VVDGVE----------GYDILVPFVEEIVPEIDE 150
Query: 255 NGREMQITPPKGLLEL 270
+ R + +TPP GLL+L
Sbjct: 151 DARVVVVTPPPGLLDL 166
>gi|47086791|ref|NP_997786.1| UDP-N-acetylhexosamine pyrophosphorylase [Danio rerio]
gi|28279882|gb|AAH44137.1| UDP-N-acteylglucosamine pyrophosphorylase 1 [Danio rerio]
gi|182891278|gb|AAI64218.1| Uap1 protein [Danio rerio]
Length = 504
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 456 RASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM 515
+ +P ++ M M + F+ + +F + V F ++ LP + + KI++
Sbjct: 156 KCCIPWYIMTSGRTMDMTKDFFIQHKYFGLKEENVVFFQQGMLPAMDFNG------KIIL 209
Query: 516 KSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKS 574
+ + AP G+GG++ L + NI+K+++ G+ YI + C N + + F+GF
Sbjct: 210 EGKCKLAMAPDGNGGLYRALGTQNIVKDMETRGISYIHVYCVDNILVKVADPAFIGFCTL 269
Query: 575 CGADIGFQISEYAKHSE 591
GAD G ++ E +E
Sbjct: 270 KGADCGAKVVEKTNPTE 286
>gi|210615862|ref|ZP_03290824.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
gi|210150065|gb|EEA81074.1| hypothetical protein CLONEX_03043 [Clostridium nexile DSM 1787]
Length = 168
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 39/198 (19%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRET----IREVKLI 130
+ VG + S HG++GE+ V P+TD + RF + L++ +L G+E I VK
Sbjct: 4 LLQVGVISSTHGVRGEVKVFPTTDDVK-RF-----KKLKKVILDTGKEQLPLEIEGVKFF 57
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
++ IL F GID + G LL +L+ E++ D++GM V
Sbjct: 58 -------KQFVILKFRGIDNINDIEKYKGKRLLVDREHAVKLKKDEYFIADMIGMD-VFT 109
Query: 191 ETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVP 250
E GEL G + +V +GAND V +IE S+ G+ V +P +++ +
Sbjct: 110 EDGELFGALKDVMETGAND---------VYIIEMSD----------GKEVLVPAIKQCIL 150
Query: 251 IVDMNGREMQITPPKGLL 268
VD+ R+M I +GL+
Sbjct: 151 DVDIENRKMVIHLLEGLV 168
>gi|421878857|ref|ZP_16310333.1| Ribosome maturation factor rimM [Leuconostoc citreum LBAE C11]
gi|390447160|emb|CCF26453.1| Ribosome maturation factor rimM [Leuconostoc citreum LBAE C11]
Length = 172
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ VG + + HG++GE+ + TDF RF Q+ ++ V + R H
Sbjct: 5 NYFKVGTIVNTHGIRGEVKIMAITDFAADRFKKGAA----LQIETKQGFVPVTVQSSRLH 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ W++ FEG+ + + + + R EL D E+Y +++ RVV +GE
Sbjct: 61 --KNMWLVLFEGVTNINEIEKYKTNDIYVYGETRAELGDDEYYYDEIIDSRVV-SLSGEA 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +GAND+ V SDA IP ++++V VD+
Sbjct: 118 IGVVSEIMTTGANDVWVV--------------KRPGQSDA-----LIPMIDDVVKSVDVA 158
Query: 256 GREMQITPPKGLLE 269
+ + I +GLL+
Sbjct: 159 NKLITIDVLEGLLD 172
>gi|422858342|ref|ZP_16904992.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1057]
gi|327460228|gb|EGF06565.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1057]
Length = 172
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLADLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+G + + GAND+ V R + +P++ +
Sbjct: 111 --ENDVLLGRIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|414169585|ref|ZP_11425318.1| ribosome maturation factor rimM [Afipia clevelandensis ATCC 49720]
gi|410885317|gb|EKS33132.1| ribosome maturation factor rimM [Afipia clevelandensis ATCC 49720]
Length = 177
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 29/186 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V V + HG++GE+ + P T+ P + G + ++ R+ +++ R +
Sbjct: 9 VAKVGAAHGVRGEVRLWPFTEDP-MSVIDYGP------LSTKDGARQFEVV--RARIAKD 59
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+ +GI T E A + G L PE EDGE+Y DL+G+R + G +G V
Sbjct: 60 HLVAVIKGIATREDAERINGLELYIDRDKLPETEDGEYYHADLIGLR-ALDPAGAEIGKV 118
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ + N GA D++ + + G + +PF E+VP VD++G +
Sbjct: 119 LAIHNFGAGDIIEI-------------------APLQGATLLLPFTNEVVPTVDLSGGHV 159
Query: 260 QITPPK 265
I P+
Sbjct: 160 VIVRPQ 165
>gi|403251246|ref|ZP_10917597.1| RimM protein, required for 16S rRNA processing [actinobacterium
SCGC AAA027-L06]
gi|402915454|gb|EJX36426.1| RimM protein, required for 16S rRNA processing [actinobacterium
SCGC AAA027-L06]
Length = 166
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 31/191 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + HG+ GE +++ +D P+LRF G + L E +E+ + R H +
Sbjct: 5 VGRIGRAHGVLGEATIEVQSDDPDLRFKV-GNK------LTLENGKELTIRSARWH--NQ 55
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+L F+GID + L LL+ + D L GE++ + L+G +V++ +GEL+G V
Sbjct: 56 ILLLAFDGIDDRNEIESL-RDELLSADVDLSTLAPGEYHYQQLLGSKVLLT-SGELIGEV 113
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V DLL V G+ V IP V++ + +D++ + +
Sbjct: 114 DEVVKLPGQDLLSVTQL--------------------GKQVLIPMVKQFIVSIDIDSKTI 153
Query: 260 QITPPKGLLEL 270
I PP+GLL++
Sbjct: 154 VINPPEGLLDV 164
>gi|421872831|ref|ZP_16304448.1| 16S rRNA processing protein RimM [Brevibacillus laterosporus GI-9]
gi|372458246|emb|CCF13997.1| 16S rRNA processing protein RimM [Brevibacillus laterosporus GI-9]
Length = 173
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
F VG + + GL+GE+ V +TDFP++RF L L I V++ REH
Sbjct: 6 FYTVGKLVNTQGLRGEMRVVSTTDFPDVRFKKGNKLHLFHPSLTEPVI--VEIASYREH- 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ ILTF+G ++ G L E + ELE+ EFY L+G V+ +TGE++
Sbjct: 63 -KDFTILTFKGYLSINDVEKYKGGELKVPETELLELEEDEFYIHQLIGCEVI-TDTGEVL 120
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G + V GAND V V++G++ G+ + +PF+++ + VD+
Sbjct: 121 GKITEVLQPGAND---------VWVVKGNK----------GKEIMLPFIDDCIKEVDVQN 161
Query: 257 REMQITPPKGLL 268
+++ GLL
Sbjct: 162 KKVICHLMDGLL 173
>gi|417788152|ref|ZP_12435835.1| 16S rRNA processing protein RimM [Lactobacillus salivarius NIAS840]
gi|334308329|gb|EGL99315.1| 16S rRNA processing protein RimM [Lactobacillus salivarius NIAS840]
Length = 168
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + TDFP+ RF ++R G+ E+K
Sbjct: 1 MNYYEVGKIVNTHGIKGELKIISKTDFPKDRFKPGNILYIRDN--GKINSYEIK-----S 53
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K + ++TF+G++ + L G TL E + L DG +Y ++G+ V E
Sbjct: 54 HRTHKQFEMITFKGLENINLVENLKGKTLEISEEQQESLSDGNYYHHQIIGLD-VFSEDN 112
Query: 194 ELVGTVVNVFNSGANDL 210
+G + + + GAND+
Sbjct: 113 NYIGVIKEIMSPGANDV 129
>gi|15827851|ref|NP_302114.1| 16S rRNA-processing protein RimM [Mycobacterium leprae TN]
gi|221230328|ref|YP_002503744.1| 16S rRNA-processing protein RimM [Mycobacterium leprae Br4923]
gi|3914643|sp|O33016.1|RIMM_MYCLE RecName: Full=Ribosome maturation factor RimM
gi|254797758|sp|B8ZRW7.1|RIMM_MYCLB RecName: Full=Ribosome maturation factor RimM
gi|2251157|emb|CAB10628.1| hypothetical protein MLCB250.34 [Mycobacterium leprae]
gi|13093403|emb|CAC30567.1| 16S rRNA processing protein [Mycobacterium leprae]
gi|219933435|emb|CAR71711.1| 16S rRNA processing protein [Mycobacterium leprae Br4923]
Length = 179
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVKLIDGREHPGQ 138
+G V HG+ GE+ V+ TD P RF PG LR + R R ++ REH +
Sbjct: 12 IGRVVKAHGIGGEVVVEIRTDDPASRFC-PGN-ILRAKDFPRGGPERRYTVVYAREHGAR 69
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGELVG 197
++ G+ + A L GS + D P +++ + +Y L G++V G VG
Sbjct: 70 --LLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQV-RTMMGRDVG 126
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V V ++ A +LL V C S V +PFV IV +V ++
Sbjct: 127 VVAEVLHTAAGELLAVRCDSGE--------------------VLVPFVGAIVKLVSLDDG 166
Query: 258 EMQITPPKGLLEL 270
++I PPKGLL+L
Sbjct: 167 IVEIDPPKGLLDL 179
>gi|430806143|ref|ZP_19433258.1| 16S rRNA-processing protein RimM [Cupriavidus sp. HMR-1]
gi|429501676|gb|ELA00007.1| 16S rRNA-processing protein RimM [Cupriavidus sp. HMR-1]
Length = 220
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW--LRQQVLG--------RETIR 125
D V+VGYV + +G++G I V+P D + RW LR G E +
Sbjct: 40 DLVEVGYVGAAYGIRGWIKVQPHAD--DASALLHARRWWLLRAPPAGVVSAPAQSAEAV- 96
Query: 126 EVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGM 185
+K+ REH G + + G+ A L G + R D P E+GEFY DL+G
Sbjct: 97 SIKISQSREHSG--TVVAQPAGVSDRGVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGC 154
Query: 186 RVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV 245
VV E GE +G V + ++GA+ +L V + + +G A+ RL IPFV
Sbjct: 155 AVV-NEQGESLGEVTGLIDNGAHQILQV----AYELPDGK---------AAERL--IPFV 198
Query: 246 EEIVPIVDMNGREMQI 261
+ + VD R + +
Sbjct: 199 DAFLRTVDTPARRIVV 214
>gi|404258884|ref|ZP_10962201.1| ribosome maturation factor RimM [Gordonia namibiensis NBRC 108229]
gi|403402664|dbj|GAC00611.1| ribosome maturation factor RimM [Gordonia namibiensis NBRC 108229]
Length = 177
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD PELRF R G E R + RE
Sbjct: 1 MDLV-VGRVVKSHGIRGELVVDVRTDEPELRFARGSVLRGRLPRGGGE--RGFTVTAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETG 193
H G+ +++ EGI + + A + G+ L + P + EFY +L G+ V + + G
Sbjct: 58 HSGR--LLVSLEGIASRDAADAMRGTLFLIDSSEVEPSDDPDEFYDHELEGVPVQLAD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V +V + +LL S R V IPFV EIVP V
Sbjct: 115 TEVGVVESVLHMPGGELL-------------------SVRTPDKREVLIPFVREIVPTVT 155
Query: 254 MNGREMQIT-PPKGLLE 269
RE+ + PP+GLL+
Sbjct: 156 ---RELIVVDPPEGLLD 169
>gi|115377061|ref|ZP_01464277.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
gi|115365900|gb|EAU64919.1| 16S rRNA processing protein RimM [Stigmatella aurantiaca DW4/3-1]
Length = 163
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HG++GEI+++ P R +R + G E R +++ D R P K I+ E
Sbjct: 5 HGIRGEIAIRTFEXRPRRRSMVVERLSVRTRA-GEE--RVLRIEDVRPTP--KENIVALE 59
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSG 206
G+DT E A LVG+ + A D ++GEF+ DLVG+ V E G+ +GTV ++N+G
Sbjct: 60 GVDTREAAEALVGAAVFAYREDLEPPQEGEFFQGDLVGLTAV-DEAGQALGTVEEIWNTG 118
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 263
L VI + +A + +PF +E VP VD+ ++ I P
Sbjct: 119 EVPNL---------VIRSAGQAE----------LIVPFADEFVPSVDLPQGKIVIRP 156
>gi|386019782|ref|YP_005937806.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri DSM 4166]
gi|327479754|gb|AEA83064.1| 16S rRNA-processing protein RimM [Pseudomonas stutzeri DSM 4166]
Length = 175
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGR-ETIREVKLIDG 132
+ V +G + SVHG++G++ V FT P L R+ L R + +++V+L+ G
Sbjct: 7 ELVVIGKIVSVHGVRGDVKV--------YSFTDPIDNLLDYRRWTLRRGDEVKQVELVKG 58
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R + + +G+ E AR + + P L+DGE+Y L G++ V+ +
Sbjct: 59 RLQ--GNILVASLKGLTDREVARTYADFEICVPRSELPALDDGEYYWYQLQGLK-VLNQA 115
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+L+G V ++ +GAND+L V + + + D RL +P+ + V V
Sbjct: 116 GQLLGQVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTDHCVLKV 160
Query: 253 DMNGREMQI 261
D++ EMQ+
Sbjct: 161 DLDSGEMQV 169
>gi|225562592|gb|EEH10871.1| UDP-N-acetylglucosamine pyrophosphorylase [Ajellomyces capsulatus
G186AR]
Length = 515
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 48/249 (19%)
Query: 459 MPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSP 518
+P ++ Q + F +++ F D K V E+ LP +S N+ KILM+S
Sbjct: 188 IPWYVMTSGPTRQPTQSFFEEHNFFGLDKKNVIIFEQGVLPCIS------NEGKILMESK 241
Query: 519 WETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQ-ICTANPRNAIGNSMFLGFVKSCGA 577
+ AP G+GG++ L + I ++ G+E+I C N + + +FLGF S G
Sbjct: 242 SKVAVAPDGNGGIYQALLTWGIRTDMKNRGIEHIHAYCVDNCLVKVADPIFLGFAASKGV 301
Query: 578 DIGFQI-----------------------------SEYAKHSEERFNTMLSMNVMKKLTN 608
DI ++ E A+ + + +L + N
Sbjct: 302 DIATKVVRKRNATESVGLILLRNGKPDVVEYSEIDKETAEAQDPKHPDVLKFRAA-NIVN 360
Query: 609 HINKLEFYAT-----PKLNSHVEK-----VDKEFIDVI-PAAPNSYELRSSIYSCLNACS 657
H F + P L HV + +D + DVI P PN +L ++
Sbjct: 361 HYYSFHFLESIEVWAPNLPHHVARKKIPCIDTKTGDVIKPERPNGIKLEQFVFDVFPLLP 420
Query: 658 LDKVCVMEI 666
LDK +E+
Sbjct: 421 LDKFASIEV 429
>gi|90961609|ref|YP_535525.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227890696|ref|ZP_04008501.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|301299256|ref|ZP_07205542.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|385840302|ref|YP_005863626.1| Ribosome maturation factor rimM [Lactobacillus salivarius CECT
5713]
gi|122449137|sp|Q1WU93.1|RIMM_LACS1 RecName: Full=Ribosome maturation factor RimM
gi|90820803|gb|ABD99442.1| 16S rRNA processing protein [Lactobacillus salivarius UCC118]
gi|227867634|gb|EEJ75055.1| 16S rRNA processing protein [Lactobacillus salivarius ATCC 11741]
gi|300214423|gb|ADJ78839.1| Ribosome maturation factor rimM [Lactobacillus salivarius CECT
5713]
gi|300853100|gb|EFK80698.1| 16S rRNA processing protein RimM [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 168
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HG++GE+ + TDFPE RF ++R G+ E+K
Sbjct: 1 MNYYEVGKIVNTHGIKGELKIISKTDFPEDRFKPGNILYIRDN--GKINSYEIK-----S 53
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K + ++TF+G++ + L G L E + L DG +Y ++G+ V E
Sbjct: 54 HRTHKQFEMITFKGLENINLVENLKGKILEISEEQQENLSDGNYYHHQIIGLD-VFSEDN 112
Query: 194 ELVGTVVNVFNSGANDL 210
+G + + + GAND+
Sbjct: 113 NYIGVIKEIMSPGANDV 129
>gi|398307426|ref|ZP_10511012.1| 16S rRNA-processing protein RimM [Bacillus vallismortis DV1-F-3]
Length = 174
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 24/190 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + + HG++GE+ V TDF E R+ T +L + G EV + R H ++
Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFRD--GHNEPVEVTVNTHRLH--KQ 63
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+L F+ ++ + L + + E D EL++GEFY +++G V + G+L+G V
Sbjct: 64 FHLLQFKERQSLNEVEELKNAIIKVPEEDLGELDEGEFYFHEIIGCEVFTGD-GQLIGKV 122
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
+ GAND+ + + DA IP++E +V +D++ +++
Sbjct: 123 KEILTPGANDVWVI--------------GRNGKKDA-----LIPYIESVVKHIDVSEKKI 163
Query: 260 QITPPKGLLE 269
++ +GL++
Sbjct: 164 EVELMEGLID 173
>gi|409391171|ref|ZP_11242863.1| ribosome maturation factor RimM [Gordonia rubripertincta NBRC
101908]
gi|403198984|dbj|GAB86097.1| ribosome maturation factor RimM [Gordonia rubripertincta NBRC
101908]
Length = 177
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 65/197 (32%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD PELRF R G E R + RE
Sbjct: 1 MDLV-VGRVVKSHGIRGELVVDVRTDEPELRFARGSVLRGRLPRGGGE--RGFTVTAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD-RPELEDGEFYTRDLVGMRVVMKETG 193
H G+ +++ +GI + A L G+ L + P + EFY +L G+ V + +
Sbjct: 58 HSGR--LLVSLDGIAGRDAADALRGTLFLIDSSEVEPSDDPDEFYDHELEGVPVQLADGA 115
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
E VG V +V + +LL S R V IPFV EIVP V
Sbjct: 116 E-VGVVESVLHMPGGELL-------------------SVRTPDKREVLIPFVREIVPTVT 155
Query: 254 MNGREM-QITPPKGLLE 269
RE+ I PP+GLL+
Sbjct: 156 ---RELIVIDPPEGLLD 169
>gi|29829184|ref|NP_823818.1| 16S rRNA-processing protein RimM [Streptomyces avermitilis MA-4680]
gi|48474815|sp|Q82JW2.1|RIMM_STRAW RecName: Full=Ribosome maturation factor RimM
gi|29606290|dbj|BAC70353.1| putative 16S rRNA processing protein [Streptomyces avermitilis
MA-4680]
Length = 186
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR +G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASVGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L +TLL E D E+ + E+Y L+ + VV K+ G VG
Sbjct: 59 -LLLRFEGVRDRNGAEAL-RNTLLIAEVDPDEVPEDPDEYYDHQLMDLDVVTKD-GTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + + DL V+E S+ G V+IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPSQDLF---------VVERSD----------GSEVYIPFVEEIVVEIDLEEQ 156
Query: 258 EMQITPPKGLLELNLRTD 275
I PP GL++ D
Sbjct: 157 RAVIDPPPGLIDDRAEVD 174
>gi|422876289|ref|ZP_16922759.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1056]
gi|332361097|gb|EGJ38901.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1056]
Length = 172
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+G + + GAND+ V R + +P++ +
Sbjct: 111 --ENDVLLGRIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|302389632|ref|YP_003825453.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
gi|302200260|gb|ADL07830.1| 16S rRNA processing protein RimM [Thermosediminibacter oceani DSM
16646]
Length = 170
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 25/192 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ +G V + G++G++ V+ TD RF R L+ ++ + + +++
Sbjct: 3 EYIAIGRVLAPWGVRGQVKVEALTDDVN-RF-----RKLKSVLVEEDEALKSYVVNSVVF 56
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ L EGIDTVE A L G L+ D +L +G ++ D++GM V +E GEL
Sbjct: 57 LKKDFVALKLEGIDTVESAERLRGRYLMVHRKDAVKLPEGHYFICDIIGMEVYREEDGEL 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +V +GAND+ V GR + +P + ++V +D+
Sbjct: 117 LGRVRDVLKTGANDVYVV-------------------DLKGGRELLLPAIRDVVRKIDLE 157
Query: 256 GREMQITPPKGL 267
+M + +G+
Sbjct: 158 NNKMVVKLMEGM 169
>gi|298253303|ref|ZP_06977095.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
gi|297532698|gb|EFH71584.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 5-1]
Length = 197
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + V + GL+GE++V+ TD P RF PG + + RE + + R
Sbjct: 17 DLLRVCRIGKAQGLKGEVTVQIFTDEPYERFE-PGNV-----LCTADGEREFVIENARTF 70
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKE--- 191
+ WIL FE A L G+ L D EL + +Y +DLVG++ + E
Sbjct: 71 --KNRWILLFEESQNRNDAEALNGTELYVHAEDAQELAAENAWYIKDLVGLQARLCEENQ 128
Query: 192 ---TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
T +++G VV+V + GA LL + V D + +PFVE I
Sbjct: 129 LGLTPKIIGKVVDVLD-GAQSLLKIRLDHPV--------------DEEHKTALVPFVEAI 173
Query: 249 VPIVDMNGREMQITPPKGLL 268
VP VD+ + I PP GL+
Sbjct: 174 VPEVDVANGYLTINPPGGLI 193
>gi|227510445|ref|ZP_03940494.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190097|gb|EEI70164.1| 16S rRNA processing protein RimM [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 174
Score = 66.2 bits (160), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 27/199 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D+ +VG + + GL+GE+ V TDFPE RF T + Q + + +++ R+
Sbjct: 1 MDYYNVGKIVNTQGLKGEVRVIAITDFPEKRFKKGNT--IFAQTEKSKALISLEIDGVRK 58
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLL--AREGDRPELEDGEFYTRDLVGMRVVMKET 192
H G +L F+G T+ L STLL A +L+ GE+Y ++G+ V E
Sbjct: 59 HKG--FVLLHFKGYPTINDVEFLKPSTLLIGATSLSDDDLKPGEYYYHQIIGLDVY--EG 114
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
L+G + + + GAND+ V + +++ +P ++ +V V
Sbjct: 115 DNLIGQIKEILSPGANDVWVVQRKAKKDLL-------------------LPKIDSVVKEV 155
Query: 253 DMNGREMQITPPKGLLELN 271
D+ ++ + P+GL + N
Sbjct: 156 DLKNHKINVEIPEGLDDAN 174
>gi|237649420|ref|ZP_04523672.1| 16S rRNA-processing protein [Streptococcus pneumoniae CCRI 1974]
gi|237821918|ref|ZP_04597763.1| 16S rRNA-processing protein [Streptococcus pneumoniae CCRI 1974M2]
Length = 172
Score = 66.2 bits (160), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|239623997|ref|ZP_04667028.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47_FAA]
gi|239522028|gb|EEQ61894.1| 16S rRNA processing protein RimM [Clostridiales bacterium
1_7_47FAA]
Length = 170
Score = 66.2 bits (160), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + VG + S HG++GE+ V P+TD P RF + ++EV L G+EH
Sbjct: 3 DMLRVGVIASTHGVRGEVKVFPTTDDPS-RF---------------KQLKEVILDTGKEH 46
Query: 136 PG---------QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
+ IL F+G D + LL ELE E++ DL+G+
Sbjct: 47 LPLEIQQVKFFKNMVILKFKGYDNINDIEKYKSKDLLIPRDQAVELEPDEYFITDLIGLE 106
Query: 187 VVMKETGELVGTVVNVFNSGANDL 210
V E GE++GT+ +V +GAND+
Sbjct: 107 -VRTEDGEILGTMKDVLETGANDV 129
>gi|415727325|ref|ZP_11471423.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 00703Dmash]
gi|388062222|gb|EIK84840.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis 00703Dmash]
Length = 197
Score = 66.2 bits (160), Expect = 6e-08, Method: Composition-based stats.
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 30/200 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + V + GL+GE++V+ TD P RF PG E + + R
Sbjct: 17 DLLRVCRIGKAQGLKGEVTVQVFTDEPYERFE-PGNVLCTAD-------GEREFVIERAR 68
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGE 194
+ WIL FE A L G L A D EL + +Y +DLVG++ + E +
Sbjct: 69 TFKNRWILLFEESQNRNDAEALNGLELYAPAEDSQELAAENAWYIKDLVGLQARLCEENQ 128
Query: 195 L------VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
L +G VV+V + GA LL + + V D + +PFVE +
Sbjct: 129 LGLPACTIGKVVDVLD-GAQSLLKIRLNNPV--------------DDDNKTALVPFVEAL 173
Query: 249 VPIVDMNGREMQITPPKGLL 268
VP VD++ + I PP GL+
Sbjct: 174 VPEVDVDEGYLTIDPPGGLI 193
>gi|163744763|ref|ZP_02152123.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
gi|161381581|gb|EDQ05990.1| 16S rRNA processing protein RimM [Oceanibulbus indolifex HEL-45]
Length = 175
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 40/202 (19%)
Query: 73 SGLDFVDVGYVYSVHGLQGEISVKPSTDFPE------LRFTTPGTRWLRQQVLGRETIRE 126
S D + VG + +G++GE+ VK PE +T G+R +L
Sbjct: 2 SDQDLICVGAIAGAYGVRGEVRVKSYCAAPEDIETYRPLYTEDGSRTFNLALL------- 54
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
H + + I T E+A + G +L A P L D EFY DL+G+
Sbjct: 55 --------HQVKNGFAARIAEITTKEEADEMRGLSLFAARDQLPSLPDDEFYHADLIGLE 106
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V G L+G V V N GA+DLL + ++G+ + ++PF +
Sbjct: 107 V-YDTGGTLLGRVKTVQNHGADDLLELQ-------LKGTSATT-----------FLPFTK 147
Query: 247 EIVPIVDMNGREMQITPPKGLL 268
VP VD+ + PP G+L
Sbjct: 148 AAVPTVDLASGRIVADPPHGVL 169
>gi|197303268|ref|ZP_03168309.1| hypothetical protein RUMLAC_01991 [Ruminococcus lactaris ATCC
29176]
gi|197297694|gb|EDY32253.1| 16S rRNA processing protein RimM [Ruminococcus lactaris ATCC 29176]
Length = 178
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 19/140 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL--GRET----IREVKLI 130
F+ VG + S HGL+GE+ V P+TD RF T L++ +L G+E I+ V+
Sbjct: 13 FLQVGVISSTHGLRGEVKVFPTTD-DAARFQT-----LKEVILDTGKEKLDLEIQSVRFF 66
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
++ I+ F+GID + G +L + ELE+ E+Y DL+GM V
Sbjct: 67 -------KQFVIVKFKGIDDINDIEKYKGKSLFVARENAVELEEDEYYIGDLIGMDVYTD 119
Query: 191 ETGELVGTVVNVFNSGANDL 210
E+ E G + +V +GAN++
Sbjct: 120 ESEERFGVLKDVMETGANEV 139
>gi|114763698|ref|ZP_01443092.1| 16S rRNA processing protein RimM [Pelagibaca bermudensis HTCC2601]
gi|114543699|gb|EAU46712.1| 16S rRNA processing protein RimM [Pelagibaca bermudensis HTCC2601]
Length = 173
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 83/206 (40%), Gaps = 40/206 (19%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELR------FTTPGTRWLRQQVLGRET 123
+ AS + + VG + G+ GE+ +K T PE T G+R Q+
Sbjct: 2 SEASVSETICVGTIAGAFGVNGEVRLKSFTAEPEALAEYAPLTTEDGSRSFEVQI----- 56
Query: 124 IREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLV 183
R VK + G+ + E+A L G+ L A P L D EFY DL+
Sbjct: 57 TRSVK----------GGFAARLSGVRSKEEADALRGTGLYAPRDRLPTLPDDEFYHTDLI 106
Query: 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIP 243
G+ V G +G V V N GA DLL + + + V +P
Sbjct: 107 GL-AVFDTGGAELGRVKAVLNHGATDLLEL------------------TAPGQSKTVLLP 147
Query: 244 FVEEIVPIVDMNGREMQITPPKGLLE 269
F E VP VD+ + PP+GLLE
Sbjct: 148 FTREAVPTVDLASGRIVADPPEGLLE 173
>gi|407773726|ref|ZP_11121026.1| Ribosome maturation factor rimM [Thalassospira profundimaris
WP0211]
gi|407283172|gb|EKF08713.1| Ribosome maturation factor rimM [Thalassospira profundimaris
WP0211]
Length = 224
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 45/225 (20%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPE------LRFTTPGTRWLRQQVLGRETIREVKLI 130
+V VG + + HG++G + VK T P+ F G + +G +R+
Sbjct: 13 YVCVGMITAPHGVRGAVRVKSYTVDPDNLVGYGPLFDAKGRVKYKLSPVGH--VRD---- 66
Query: 131 DGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPE-LEDGEFYTRDLVGMRVVM 189
I EG+D + A L G+ L P+ +E+ EFY DLVG++
Sbjct: 67 ---------QLIAKIEGVDDRDAAERLRGTKLHVPRAALPDTVEEDEFYLADLVGLKAFH 117
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ G + GTV V + GA D++ V EEA + ++V +PF +E+V
Sbjct: 118 ID-GSVFGTVRGVADFGAGDVIEVAL----------EEAKN-------KVVVLPFTKEVV 159
Query: 250 PIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQ 294
P V ++ R+M + PP+GLL+ DE R + K RK Q
Sbjct: 160 PEVILSERKMVVNPPEGLLQ-----DEDGPGNRNRRPNKPRKDSQ 199
>gi|424921580|ref|ZP_18344941.1| RimM [Pseudomonas fluorescens R124]
gi|404302740|gb|EJZ56702.1| RimM [Pseudomonas fluorescens R124]
Length = 178
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG ++SVHG++GE+ V FT P L R L RE +++V+L+ G
Sbjct: 10 DLIVVGKIFSVHGVRGEVKV--------FSFTDPIENLLDYRNWTLRREGVVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R QK + +G+D ++AR L G + P L E+Y L G+ V+ ++
Sbjct: 62 RST--QKDLVAKLKGLDDRDEARLLSGYEICISRSLLPNLTGDEYYWYQLQGLSVINQDE 119
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+L G V ++ +GAND+L V + + + D RL +P+ E+ V +
Sbjct: 120 -QLFGKVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTEQCVLAI 163
Query: 253 DMNGREMQI 261
D++ M++
Sbjct: 164 DLDAGVMRV 172
>gi|418114262|ref|ZP_12751253.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5787-06]
gi|353787560|gb|EHD67962.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5787-06]
Length = 172
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|387879663|ref|YP_006309966.1| 16S rRNA-processing protein [Streptococcus parasanguinis FW213]
gi|386793116|gb|AFJ26151.1| 16S rRNA-processing protein [Streptococcus parasanguinis FW213]
Length = 172
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E R V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDRFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K++ I+ F+ + + G +L E D +LEDGEFY +++G+ V E
Sbjct: 56 HRKHKNFDIIKFKDMYHINAIEKFKGFSLKVAEEDLTDLEDGEFYYHEIIGLDVY--END 113
Query: 194 ELVGTVVNVFNSGANDL 210
+L+G + + GAND+
Sbjct: 114 QLIGQIKEILQPGANDV 130
>gi|345849779|ref|ZP_08802786.1| 16S rRNA-processing protein RimM [Streptomyces zinciresistens K42]
gi|345638760|gb|EGX60260.1| 16S rRNA-processing protein RimM [Streptomyces zinciresistens K42]
Length = 183
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G T+ GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLTTDPAATGPLTVAT-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE--FYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L + L+A + D EL +GE +Y LV + VV + G VG
Sbjct: 59 -LLLRFEGVHDRTGAEALRNTVLIA-DVDPEELPEGEDEYYDHQLVDLDVVTAD-GTEVG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + + DL V +GSE V IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPSQDLF------IVERPDGSE-------------VMIPFVEEIVAEIDLAEQ 156
Query: 258 EMQITPPKGLLE 269
ITPP GL++
Sbjct: 157 RAVITPPPGLID 168
>gi|422826451|ref|ZP_16874630.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK678]
gi|422855407|ref|ZP_16902065.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1]
gi|324994569|gb|EGC26482.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK678]
gi|327462537|gb|EGF08861.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1]
Length = 172
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+G + + GAND+ V R + +P++ +
Sbjct: 111 --ENDLLLGRIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|300854477|ref|YP_003779461.1| 16S rRNA processing protein [Clostridium ljungdahlii DSM 13528]
gi|300434592|gb|ADK14359.1| predicted 16S rRNA processing protein [Clostridium ljungdahlii DSM
13528]
Length = 162
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
DF+ VG + + HG++GE+ V P TD E RF + ++ + + I E KL
Sbjct: 3 DFITVGQIINTHGIKGELKVYPLTDDIE-RFKKLKSAYIDGTL---KNIIECKL------ 52
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
K IL EGID++E+A + D +LE+G ++ D++G VV E G
Sbjct: 53 -QSKKVILKIEGIDSIEEAMAYKQKYIEIPRNDAVKLEEGTYFITDIIGCSVV-DEDGTF 110
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G V +V ++ ND V I+G E + IP +E +V +D+
Sbjct: 111 YGKVGDVIHTHNND---------VYWIKGENE------------LLIPAIENVVVSIDVE 149
Query: 256 GREMQITPPK 265
E+ I P K
Sbjct: 150 KEEIVIKPVK 159
>gi|422865384|ref|ZP_16912009.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1058]
gi|327489778|gb|EGF21568.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK1058]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL----RQQVLGRE--TIREVK 128
+++ +VG + + GLQGE+ V TDF E RF T L Q V+ E + R+VK
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNTLALFDKKDQFVMDVEIASHRKVK 60
Query: 129 LIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVV 188
D I+ F+G+ + TL RE D +LEDGEFY +++G+ V
Sbjct: 61 NFD----------IIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY 110
Query: 189 MKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
E L+G + + GAND+ V R + +P++ +
Sbjct: 111 --EDDVLLGRIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPV 149
Query: 249 VPIVDMNGREMQITPPKGLLELN 271
V +D+ + + P+GL + N
Sbjct: 150 VLGIDIEQGRVDVEIPEGLDDEN 172
>gi|307708485|ref|ZP_07644950.1| 16S rRNA processing protein RimM [Streptococcus mitis NCTC 12261]
gi|307615401|gb|EFN94609.1| 16S rRNA processing protein RimM [Streptococcus mitis NCTC 12261]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF GT + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKK-GT----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H QK++ I+ F+ + + G +L E D +L+DGEFY +++G+ V E
Sbjct: 56 HRKQKNFDIIKFKDMYHINAIEKYKGYSLKVAEEDLNDLDDGEFYYHEIIGLEVY--EGD 113
Query: 194 ELVGTVVNVFNSGANDL 210
L+GT+ + GAND+
Sbjct: 114 NLIGTIKEILQPGANDV 130
>gi|429212126|ref|ZP_19203291.1| 16S rRNA-processing protein RimM [Pseudomonas sp. M1]
gi|428156608|gb|EKX03156.1| 16S rRNA-processing protein RimM [Pseudomonas sp. M1]
Length = 177
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRET-IREVKLIDGREHP 136
+G + SVHG++GE+ V FT P L R+ L R T +R+ +L+ GR
Sbjct: 13 LGKIVSVHGIRGEVKVYS--------FTDPLDNLLDYRRWTLKRGTEVRQAELVSGRVQG 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+ +G+D E AR +L + PEL+DGEFY L G++V+ G+L
Sbjct: 65 --NVLVAKLKGLDDREVARTYADFEILVPRSELPELDDGEFYWSQLEGLKVI-DTNGQLF 121
Query: 197 GTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G + ++ +GAND++ V C S+ D RL +P+ E+ V VD+
Sbjct: 122 GILDHMLETGANDVMVVKPCAGSL--------------DDRERL--LPYTEQCVQSVDLA 165
Query: 256 GREMQI 261
E+++
Sbjct: 166 AGEIRV 171
>gi|407925396|gb|EKG18407.1| UTP--glucose-1-phosphate uridylyltransferase [Macrophomina
phaseolina MS6]
Length = 509
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 46/233 (19%)
Query: 474 EKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFS 533
E+ F ++++F D V E+ LP +S N KIL++S + AP G+GG++
Sbjct: 201 EQFFQEHNYFGLDKANVTIFEQGVLPCIS------NDGKILLESKSKVAVAPDGNGGLYQ 254
Query: 534 LLSSHNIIKNLDELGVEYIQ-ICTANPRNAIGNSMFLGFVKSCGADIGFQ---------- 582
L + +++ ++ + G++++ C N + + F+GF S +I +
Sbjct: 255 ALITSSVVADMSKRGIQHVHAYCVDNCLVKVADPTFIGFSASKDVEIATKVVRKRNAKES 314
Query: 583 ------------ISEYAKHSEERFNTMLSMNV------MKKLTNHINKLEFYA-----TP 619
+ EY++ SEE S N + NH F +
Sbjct: 315 VGLIMQRNGKPDVVEYSEISEEMAEARDSSNSELLKFRAANIVNHYYSFRFLESIPQWSH 374
Query: 620 KLNSHVEKVDKEFID------VIPAAPNSYELRSSIYSCLNACSLDKVCVMEI 666
+L H+ + ++D V P PN +L ++ C S+DK ME+
Sbjct: 375 RLPHHIARKKIPYVDTESGNTVKPEKPNGIKLEQFVFDCFPFLSMDKFACMEV 427
>gi|156089129|ref|XP_001611971.1| 16S rRNA processing protein RimM domain containing protein [Babesia
bovis]
gi|154799225|gb|EDO08403.1| 16S rRNA processing protein RimM domain containing protein [Babesia
bovis]
Length = 527
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S HGL+G + V + P++ PG ++L+ E + +K+ GR +
Sbjct: 209 EYIVVGKILSPHGLKGHVKVMSLSSCPDIHLCQPGYKFLKIPYRN-ERVMPIKIEYGRLY 267
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM--KETG 193
G K + L EG+DT +QA L G+ L D P L++ +Y+RDL+ M + + T
Sbjct: 268 DGIKMYRLKLEGVDTRDQAIRLNGAYLSVSIRDVPPLQEDCYYSRDLLDMDLYLFNDNTK 327
Query: 194 ELVGTVVN 201
+G V++
Sbjct: 328 TRLGKVID 335
>gi|407798321|ref|ZP_11145229.1| 16S rRNA-processing protein RimM [Oceaniovalibus guishaninsula
JLT2003]
gi|407059757|gb|EKE45685.1| 16S rRNA-processing protein RimM [Oceaniovalibus guishaninsula
JLT2003]
Length = 173
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
+ P + + GI T E A L G L A P L D E+Y DL+G+ VV G
Sbjct: 51 QRPIKDGYAARLSGIATPEAAEALRGKRLFAPRDRLPALPDEEYYHADLIGLGVV-GPGG 109
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
++G V+ V N GA+DLL + A + G V +PF + VP VD
Sbjct: 110 AMLGRVLAVVNHGADDLLEI------------------APEGGGETVLLPFTRKAVPTVD 151
Query: 254 MNGREMQITPPKGLL 268
+ + PP G+
Sbjct: 152 LAAGRIVADPPDGIF 166
>gi|421206221|ref|ZP_15663285.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2090008]
gi|421229422|ref|ZP_15686098.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2061376]
gi|421233774|ref|ZP_15690396.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2061617]
gi|421249078|ref|ZP_15705541.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2082239]
gi|421291581|ref|ZP_15742321.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA56348]
gi|421311523|ref|ZP_15762130.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58981]
gi|395577301|gb|EJG37846.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2090008]
gi|395596926|gb|EJG57135.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2061376]
gi|395602671|gb|EJG62813.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2061617]
gi|395615707|gb|EJG75723.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2082239]
gi|395894883|gb|EJH05860.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA56348]
gi|395912101|gb|EJH22964.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58981]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELTLFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|116512362|ref|YP_809578.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp.
cremoris SK11]
gi|385837910|ref|YP_005875540.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp.
cremoris A76]
gi|414074615|ref|YP_006999832.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp.
cremoris UC509.9]
gi|123125479|sp|Q02Y16.1|RIMM_LACLS RecName: Full=Ribosome maturation factor RimM
gi|116108016|gb|ABJ73156.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp.
cremoris SK11]
gi|358749138|gb|AEU40117.1| 16S rRNA processing protein RimM [Lactococcus lactis subsp.
cremoris A76]
gi|413974535|gb|AFW91999.1| 16S rRNA-processing protein RimM [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 171
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F VG + + GLQGE+ V PSTDF RF+ L I+++K+ GR
Sbjct: 3 NFYKVGTIVNTQGLQGEVRVLPSTDFANERFSKGAVLALFDD--KDNYIQDLKVKSGRLQ 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +++ FEG + G + + ++ EL DGEFY +++G V E L
Sbjct: 61 --KNFYVVKFEGFYHINDVEKYKGYVVKIAQENQEELNDGEFYYHEIIGSDVY--ENDIL 116
Query: 196 VGTVVNVFNSGANDL 210
+G + + GAND+
Sbjct: 117 IGQISEILQPGANDV 131
>gi|156403095|ref|XP_001639925.1| predicted protein [Nematostella vectensis]
gi|156227056|gb|EDO47862.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 433 ANKSLALLQTLLSDDQRFVKIENRAS--------MPLVLVLPALEMQMLEKLFLDNDHFA 484
+ K+L LQ +R K+E A+ +P L+ + K F DND+F
Sbjct: 130 SGKTLYQLQA-----ERIRKVEELAAKKSGKKCIVPWYLMTSEHTKESTSKFFSDNDYFG 184
Query: 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNL 544
D + E+ +P +S KI++ + +AP G+GG+++ L +H I++++
Sbjct: 185 LDKENFVVFEQNTIPCMSFEG------KIILADKGKLARAPDGNGGLYAALLTHKILEDM 238
Query: 545 DELGVEYIQICTA-NPRNAIGNSMFLGFVKSCGADIGFQISE 585
++ GVEYI + N + + +F+GF GAD G ++ E
Sbjct: 239 EKRGVEYIHVYGVDNILVKMADPVFIGFCIGKGADCGAKVVE 280
>gi|167751815|ref|ZP_02423942.1| hypothetical protein ALIPUT_00056 [Alistipes putredinis DSM 17216]
gi|167660056|gb|EDS04186.1| 16S rRNA processing protein RimM [Alistipes putredinis DSM 17216]
Length = 163
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 36/196 (18%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGR-EH 135
+ V V + G++G + + T FP+ F+T +++ L V L R E
Sbjct: 2 LLSVARVSKLFGVEGGVLLNLYTTFPD-DFSTEEPLFVKIDSLA------VPLFCDRFER 54
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
G+ + + TF ID+ +A +G L L E D E+ EFY DL+G RV G
Sbjct: 55 RGKTNALATFADIDSARRAEEFIGRELYLEHEDD----ENDEFYLEDLIGFRV---RIGT 107
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L G + + ++S AN L V + G+ + +P VEE + +D
Sbjct: 108 LKGEITDYYDSEANPLFEV--------------------EIGGKRILVPAVEEFIAGIDF 147
Query: 255 NGREMQITPPKGLLEL 270
GR +++ P+GL+EL
Sbjct: 148 EGRTVKMVLPEGLIEL 163
>gi|220912967|ref|YP_002488276.1| 16S rRNA-processing protein RimM [Arthrobacter chlorophenolicus A6]
gi|219859845|gb|ACL40187.1| 16S rRNA processing protein RimM [Arthrobacter chlorophenolicus A6]
Length = 181
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 28/185 (15%)
Query: 87 HGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFE 146
HG++GE++V+ TD P RF PG ++ E + L + +L FE
Sbjct: 12 HGIRGEVTVQVMTDAPGDRFV-PGVEFVV------EPAQSGPLTVSSARWNKDILLLAFE 64
Query: 147 GIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSG 206
I+ QA L G+ L + E ++ +Y +LVG+ + T +VG V + +
Sbjct: 65 EIEDRNQAETLRGAKLFIETAELDEDDEDGWYEHELVGLEARVGST--VVGKVTALNTAP 122
Query: 207 ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKG 266
A DLL V + G + IPFVE+IVP V++ + +TPP G
Sbjct: 123 AQDLLMV-------------------TTPDGEEILIPFVEQIVPEVNVGEGYILLTPPDG 163
Query: 267 LLELN 271
L E+N
Sbjct: 164 LFEVN 168
>gi|15902730|ref|NP_358280.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae R6]
gi|116516249|ref|YP_816172.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae D39]
gi|148985872|ref|ZP_01818966.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP3-BS71]
gi|148989860|ref|ZP_01821154.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP6-BS73]
gi|148992443|ref|ZP_01822138.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP9-BS68]
gi|148997144|ref|ZP_01824798.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP11-BS70]
gi|149003399|ref|ZP_01828288.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS69]
gi|149007660|ref|ZP_01831277.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP18-BS74]
gi|149010594|ref|ZP_01831965.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP19-BS75]
gi|149021644|ref|ZP_01835675.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP23-BS72]
gi|168484436|ref|ZP_02709388.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1873-00]
gi|168488447|ref|ZP_02712646.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SP195]
gi|168492929|ref|ZP_02717072.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC3059-06]
gi|168575439|ref|ZP_02721375.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae MLV-016]
gi|169834325|ref|YP_001694237.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
Hungary19A-6]
gi|182683696|ref|YP_001835443.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae CGSP14]
gi|194397767|ref|YP_002037423.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae G54]
gi|221231571|ref|YP_002510723.1| 16S rRNA processing protein [Streptococcus pneumoniae ATCC 700669]
gi|225856451|ref|YP_002737962.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae P1031]
gi|225858585|ref|YP_002740095.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae 70585]
gi|225861320|ref|YP_002742829.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230989|ref|ZP_06964670.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254138|ref|ZP_06977724.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503218|ref|YP_003725158.1| 16S rRNA-processing protein [Streptococcus pneumoniae TCH8431/19A]
gi|303255809|ref|ZP_07341850.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS455]
gi|303260244|ref|ZP_07346215.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP-BS293]
gi|303261450|ref|ZP_07347398.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS292]
gi|303264118|ref|ZP_07350039.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS397]
gi|303266271|ref|ZP_07352162.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS457]
gi|303268710|ref|ZP_07354500.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS458]
gi|307127673|ref|YP_003879704.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 670-6B]
gi|387757202|ref|YP_006064181.1| 16S rRNA processing protein [Streptococcus pneumoniae OXC141]
gi|387759033|ref|YP_006066011.1| 16S rRNA processing protein [Streptococcus pneumoniae INV200]
gi|387788539|ref|YP_006253607.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae ST556]
gi|405760940|ref|YP_006701536.1| 16S rRNA processing protein [Streptococcus pneumoniae SPNA45]
gi|410476218|ref|YP_006742977.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
gamPNI0373]
gi|415697784|ref|ZP_11456899.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 459-5]
gi|415749183|ref|ZP_11477127.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SV35]
gi|415751865|ref|ZP_11478976.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SV36]
gi|417312348|ref|ZP_12099062.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04375]
gi|417676526|ref|ZP_12325939.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17545]
gi|417678719|ref|ZP_12328116.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17570]
gi|417686219|ref|ZP_12335497.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41301]
gi|417695934|ref|ZP_12345114.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47368]
gi|417698199|ref|ZP_12347372.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41317]
gi|418074115|ref|ZP_12711371.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11184]
gi|418075883|ref|ZP_12713122.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47502]
gi|418078266|ref|ZP_12715489.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 4027-06]
gi|418080219|ref|ZP_12717434.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6735-05]
gi|418083288|ref|ZP_12720485.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44288]
gi|418085477|ref|ZP_12722656.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47281]
gi|418086515|ref|ZP_12723686.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47033]
gi|418089168|ref|ZP_12726326.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43265]
gi|418091391|ref|ZP_12728536.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44452]
gi|418093616|ref|ZP_12730745.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49138]
gi|418095878|ref|ZP_12732993.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16531]
gi|418098142|ref|ZP_12735242.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6901-05]
gi|418100944|ref|ZP_12738028.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7286-06]
gi|418102493|ref|ZP_12739569.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP070]
gi|418104825|ref|ZP_12741885.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44500]
gi|418109740|ref|ZP_12746769.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49447]
gi|418112122|ref|ZP_12749125.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41538]
gi|418116500|ref|ZP_12753474.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6963-05]
gi|418118925|ref|ZP_12755882.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA18523]
gi|418120853|ref|ZP_12757799.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44194]
gi|418123041|ref|ZP_12759976.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44378]
gi|418125381|ref|ZP_12762297.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44511]
gi|418127628|ref|ZP_12764524.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP170]
gi|418132617|ref|ZP_12769490.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11304]
gi|418134509|ref|ZP_12771367.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11426]
gi|418136800|ref|ZP_12773643.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11663]
gi|418139091|ref|ZP_12775922.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13338]
gi|418141374|ref|ZP_12778187.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13455]
gi|418143587|ref|ZP_12780387.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13494]
gi|418145997|ref|ZP_12782781.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13637]
gi|418148207|ref|ZP_12784972.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13856]
gi|418150992|ref|ZP_12787738.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14798]
gi|418152515|ref|ZP_12789255.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16121]
gi|418154808|ref|ZP_12791539.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16242]
gi|418157763|ref|ZP_12794479.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16833]
gi|418159418|ref|ZP_12796120.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17227]
gi|418161816|ref|ZP_12798507.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17328]
gi|418166389|ref|ZP_12803045.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17971]
gi|418168870|ref|ZP_12805516.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19077]
gi|418171619|ref|ZP_12808243.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19451]
gi|418173138|ref|ZP_12809752.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41277]
gi|418177800|ref|ZP_12814384.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41565]
gi|418180132|ref|ZP_12816704.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41688]
gi|418182373|ref|ZP_12818934.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43380]
gi|418189001|ref|ZP_12825516.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47373]
gi|418191325|ref|ZP_12827829.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47388]
gi|418196113|ref|ZP_12832591.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47688]
gi|418197609|ref|ZP_12834073.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47778]
gi|418202053|ref|ZP_12838483.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA52306]
gi|418213947|ref|ZP_12840682.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA54644]
gi|418216225|ref|ZP_12842949.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Netherlands15B-37]
gi|418218515|ref|ZP_12845183.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP127]
gi|418220697|ref|ZP_12847353.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47751]
gi|418223686|ref|ZP_12850326.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5185-06]
gi|418225199|ref|ZP_12851828.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP112]
gi|418227365|ref|ZP_12853984.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 3063-00]
gi|418231842|ref|ZP_12858430.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07228]
gi|418233967|ref|ZP_12860547.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA08780]
gi|418236141|ref|ZP_12862710.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19690]
gi|418238349|ref|ZP_12864905.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419422290|ref|ZP_13962509.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43264]
gi|419424809|ref|ZP_13965008.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7533-05]
gi|419427546|ref|ZP_13967727.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5652-06]
gi|419429685|ref|ZP_13969849.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11856]
gi|419431175|ref|ZP_13971321.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP05]
gi|419433434|ref|ZP_13973553.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40183]
gi|419435653|ref|ZP_13975747.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 8190-05]
gi|419437734|ref|ZP_13977806.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13499]
gi|419439986|ref|ZP_13980040.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40410]
gi|419442265|ref|ZP_13982296.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13224]
gi|419444995|ref|ZP_13985010.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19923]
gi|419447138|ref|ZP_13987143.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7879-04]
gi|419451126|ref|ZP_13991112.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP02]
gi|419452720|ref|ZP_13992694.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP03]
gi|419455181|ref|ZP_13995141.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP04]
gi|419457148|ref|ZP_13997094.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02254]
gi|419459622|ref|ZP_13999558.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02270]
gi|419461902|ref|ZP_14001818.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02714]
gi|419464496|ref|ZP_14004389.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04175]
gi|419466744|ref|ZP_14006627.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05248]
gi|419468648|ref|ZP_14008519.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA06083]
gi|419470737|ref|ZP_14010596.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07914]
gi|419472831|ref|ZP_14012682.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13430]
gi|419475170|ref|ZP_14015011.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14688]
gi|419479611|ref|ZP_14019419.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19101]
gi|419481799|ref|ZP_14021593.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40563]
gi|419484359|ref|ZP_14024135.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43257]
gi|419486281|ref|ZP_14026048.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44128]
gi|419488519|ref|ZP_14028272.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44386]
gi|419490704|ref|ZP_14030444.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47179]
gi|419495072|ref|ZP_14034792.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47461]
gi|419496957|ref|ZP_14036668.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47522]
gi|419499304|ref|ZP_14039003.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47597]
gi|419501515|ref|ZP_14041201.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47628]
gi|419503586|ref|ZP_14043257.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47760]
gi|419505719|ref|ZP_14045380.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49194]
gi|419507841|ref|ZP_14047495.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49542]
gi|419512171|ref|ZP_14051805.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05578]
gi|419514332|ref|ZP_14053960.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
England14-9]
gi|419516455|ref|ZP_14056073.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02506]
gi|419518580|ref|ZP_14058187.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA08825]
gi|419520715|ref|ZP_14060312.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05245]
gi|419523077|ref|ZP_14062658.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13723]
gi|419525519|ref|ZP_14065084.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14373]
gi|419527822|ref|ZP_14067365.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17719]
gi|419532012|ref|ZP_14071530.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47794]
gi|419534218|ref|ZP_14073724.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17457]
gi|421208608|ref|ZP_15665632.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070005]
gi|421210727|ref|ZP_15667715.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070035]
gi|421217271|ref|ZP_15674172.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070335]
gi|421219960|ref|ZP_15676815.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070425]
gi|421222291|ref|ZP_15679085.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070531]
gi|421224635|ref|ZP_15681380.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070768]
gi|421231541|ref|ZP_15688188.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2080076]
gi|421235933|ref|ZP_15692534.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2071004]
gi|421238410|ref|ZP_15694979.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2071247]
gi|421240342|ref|ZP_15696889.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2080913]
gi|421244604|ref|ZP_15701107.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2081685]
gi|421265806|ref|ZP_15716689.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR27]
gi|421267981|ref|ZP_15718853.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR95]
gi|421272420|ref|ZP_15723267.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR55]
gi|421274687|ref|ZP_15725519.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA52612]
gi|421278541|ref|ZP_15729351.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17301]
gi|421280758|ref|ZP_15731557.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04672]
gi|421282962|ref|ZP_15733751.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04216]
gi|421285491|ref|ZP_15736268.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60190]
gi|421287756|ref|ZP_15738519.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58771]
gi|421289419|ref|ZP_15740171.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA54354]
gi|421293636|ref|ZP_15744360.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA56113]
gi|421297381|ref|ZP_15748084.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58581]
gi|421298242|ref|ZP_15748931.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60080]
gi|421300630|ref|ZP_15751301.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19998]
gi|421302586|ref|ZP_15753251.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17484]
gi|421304739|ref|ZP_15755395.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA62331]
gi|421306962|ref|ZP_15757608.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60132]
gi|421309206|ref|ZP_15759835.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA62681]
gi|421313950|ref|ZP_15764540.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47562]
gi|444387404|ref|ZP_21185426.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS125219]
gi|444390104|ref|ZP_21188019.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS70012]
gi|444393074|ref|ZP_21190734.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS81218]
gi|444394263|ref|ZP_21191816.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0002]
gi|444397214|ref|ZP_21194701.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0006]
gi|444401099|ref|ZP_21198409.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0007]
gi|444401607|ref|ZP_21198791.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0008]
gi|444406101|ref|ZP_21202901.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0009]
gi|444408889|ref|ZP_21205519.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0010]
gi|444410745|ref|ZP_21207264.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0076]
gi|444411886|ref|ZP_21208212.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0153]
gi|444414993|ref|ZP_21211240.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0199]
gi|444416654|ref|ZP_21212739.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0360]
gi|444419758|ref|ZP_21215597.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0427]
gi|444422620|ref|ZP_21218269.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0446]
gi|32171636|sp|Q8DQG3.1|RIMM_STRR6 RecName: Full=Ribosome maturation factor RimM
gi|122278942|sp|Q04LC6.1|RIMM_STRP2 RecName: Full=Ribosome maturation factor RimM
gi|238688282|sp|B1IAV2.1|RIMM_STRPI RecName: Full=Ribosome maturation factor RimM
gi|238690810|sp|B5E3G0.1|RIMM_STRP4 RecName: Full=Ribosome maturation factor RimM
gi|238691145|sp|B2INF5.1|RIMM_STRPS RecName: Full=Ribosome maturation factor RimM
gi|254797763|sp|C1C6B9.1|RIMM_STRP7 RecName: Full=Ribosome maturation factor RimM
gi|254797764|sp|B8ZND1.1|RIMM_STRPJ RecName: Full=Ribosome maturation factor RimM
gi|254797767|sp|C1CJM4.1|RIMM_STRZP RecName: Full=Ribosome maturation factor RimM
gi|254797768|sp|C1CSA7.1|RIMM_STRZT RecName: Full=Ribosome maturation factor RimM
gi|15458275|gb|AAK99490.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae R6]
gi|116076825|gb|ABJ54545.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae D39]
gi|147756844|gb|EDK63884.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP11-BS70]
gi|147758582|gb|EDK65580.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS69]
gi|147760815|gb|EDK67786.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP18-BS74]
gi|147765075|gb|EDK72004.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP19-BS75]
gi|147922018|gb|EDK73142.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
SP3-BS71]
gi|147924802|gb|EDK75886.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP6-BS73]
gi|147928760|gb|EDK79773.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP9-BS68]
gi|147930105|gb|EDK81091.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP23-BS72]
gi|168996827|gb|ACA37439.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Hungary19A-6]
gi|172042310|gb|EDT50356.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1873-00]
gi|182629030|gb|ACB89978.1| 16S rRNA-processing protein [Streptococcus pneumoniae CGSP14]
gi|183573191|gb|EDT93719.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SP195]
gi|183576939|gb|EDT97467.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC3059-06]
gi|183578450|gb|EDT98978.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae MLV-016]
gi|194357434|gb|ACF55882.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae G54]
gi|220674031|emb|CAR68544.1| 16S rRNA processing protein [Streptococcus pneumoniae ATCC 700669]
gi|225721207|gb|ACO17061.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 70585]
gi|225724530|gb|ACO20382.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae P1031]
gi|225726909|gb|ACO22760.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238813|gb|ADI69944.1| 16S rRNA-processing protein [Streptococcus pneumoniae TCH8431/19A]
gi|301799791|emb|CBW32360.1| 16S rRNA processing protein [Streptococcus pneumoniae OXC141]
gi|301801622|emb|CBW34320.1| 16S rRNA processing protein [Streptococcus pneumoniae INV200]
gi|302597193|gb|EFL64298.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS455]
gi|302637584|gb|EFL68071.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP14-BS292]
gi|302638568|gb|EFL69032.1| 16S rRNA-processing protein [Streptococcus pneumoniae SP-BS293]
gi|302641770|gb|EFL72127.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS458]
gi|302644201|gb|EFL74457.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS457]
gi|302646523|gb|EFL76749.1| 16S rRNA-processing protein [Streptococcus pneumoniae BS397]
gi|306484735|gb|ADM91604.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 670-6B]
gi|327390134|gb|EGE88477.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04375]
gi|332073098|gb|EGI83577.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17570]
gi|332076056|gb|EGI86522.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41301]
gi|332077191|gb|EGI87653.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17545]
gi|332202640|gb|EGJ16709.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41317]
gi|332203931|gb|EGJ17998.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47368]
gi|353747457|gb|EHD28113.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 4027-06]
gi|353749615|gb|EHD30259.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11184]
gi|353749672|gb|EHD30315.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47502]
gi|353753830|gb|EHD34446.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6735-05]
gi|353754508|gb|EHD35120.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44288]
gi|353756186|gb|EHD36787.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47281]
gi|353759778|gb|EHD40361.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47033]
gi|353762855|gb|EHD43413.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43265]
gi|353765492|gb|EHD46034.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49138]
gi|353766764|gb|EHD47304.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44452]
gi|353770507|gb|EHD51020.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6901-05]
gi|353770865|gb|EHD51376.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16531]
gi|353771405|gb|EHD51914.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7286-06]
gi|353776659|gb|EHD57134.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP070]
gi|353779259|gb|EHD59725.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44500]
gi|353785033|gb|EHD65453.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49447]
gi|353785771|gb|EHD66189.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41538]
gi|353790338|gb|EHD70721.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 6963-05]
gi|353790877|gb|EHD71258.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA18523]
gi|353793680|gb|EHD74039.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44194]
gi|353798514|gb|EHD78844.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44378]
gi|353799425|gb|EHD79744.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44511]
gi|353800089|gb|EHD80403.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP170]
gi|353805625|gb|EHD85899.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13455]
gi|353806573|gb|EHD86846.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11304]
gi|353809328|gb|EHD89588.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13494]
gi|353812882|gb|EHD93115.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13856]
gi|353814202|gb|EHD94428.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14798]
gi|353815565|gb|EHD95781.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13637]
gi|353819160|gb|EHD99358.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16121]
gi|353823100|gb|EHE03275.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16242]
gi|353824211|gb|EHE04385.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA16833]
gi|353824770|gb|EHE04938.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17227]
gi|353829985|gb|EHE10115.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17971]
gi|353831406|gb|EHE11535.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17328]
gi|353835356|gb|EHE15450.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19451]
gi|353836789|gb|EHE16877.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19077]
gi|353839837|gb|EHE19911.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41277]
gi|353844574|gb|EHE24617.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41565]
gi|353846098|gb|EHE26133.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA41688]
gi|353850610|gb|EHE30614.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43380]
gi|353856143|gb|EHE36112.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47373]
gi|353857226|gb|EHE37189.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47388]
gi|353860731|gb|EHE40671.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47688]
gi|353864360|gb|EHE44276.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47778]
gi|353867856|gb|EHE47746.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA52306]
gi|353871230|gb|EHE51101.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA54644]
gi|353873276|gb|EHE53137.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
Netherlands15B-37]
gi|353876712|gb|EHE56561.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP127]
gi|353877566|gb|EHE57409.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47751]
gi|353878484|gb|EHE58314.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5185-06]
gi|353882507|gb|EHE62318.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP112]
gi|353882966|gb|EHE62775.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 3063-00]
gi|353888148|gb|EHE67924.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07228]
gi|353889406|gb|EHE69177.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA08780]
gi|353894070|gb|EHE73815.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19690]
gi|353894772|gb|EHE74513.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353902728|gb|EHE78256.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11663]
gi|353903099|gb|EHE78625.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11426]
gi|353905928|gb|EHE81344.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13338]
gi|379138281|gb|AFC95072.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae ST556]
gi|379532634|gb|EHY97859.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02254]
gi|379534494|gb|EHY99706.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02270]
gi|379534793|gb|EHZ00004.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02714]
gi|379539715|gb|EHZ04894.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04175]
gi|379540188|gb|EHZ05362.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13499]
gi|379540618|gb|EHZ05790.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05245]
gi|379544867|gb|EHZ10011.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05248]
gi|379545453|gb|EHZ10592.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA07914]
gi|379546751|gb|EHZ11889.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA06083]
gi|379549863|gb|EHZ14965.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA11856]
gi|379552338|gb|EHZ17427.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13430]
gi|379554232|gb|EHZ19312.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13224]
gi|379558616|gb|EHZ23649.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA13723]
gi|379559910|gb|EHZ24937.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14373]
gi|379561508|gb|EHZ26525.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA14688]
gi|379565975|gb|EHZ30966.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17719]
gi|379567262|gb|EHZ32248.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17457]
gi|379572688|gb|EHZ37645.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19923]
gi|379573265|gb|EHZ38221.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19101]
gi|379577564|gb|EHZ42483.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40183]
gi|379580597|gb|EHZ45487.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40410]
gi|379581478|gb|EHZ46363.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40563]
gi|379583870|gb|EHZ48747.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43257]
gi|379589190|gb|EHZ54030.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44128]
gi|379589621|gb|EHZ54460.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA43264]
gi|379590634|gb|EHZ55472.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA44386]
gi|379594283|gb|EHZ59093.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47179]
gi|379597436|gb|EHZ62239.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47461]
gi|379601471|gb|EHZ66244.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47522]
gi|379601876|gb|EHZ66648.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47628]
gi|379602358|gb|EHZ67129.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47597]
gi|379607633|gb|EHZ72379.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49194]
gi|379608768|gb|EHZ73513.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47794]
gi|379609184|gb|EHZ73925.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47760]
gi|379612686|gb|EHZ77403.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA49542]
gi|379614678|gb|EHZ79388.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7879-04]
gi|379616189|gb|EHZ80888.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 8190-05]
gi|379617739|gb|EHZ82419.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 5652-06]
gi|379620138|gb|EHZ84797.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 7533-05]
gi|379622831|gb|EHZ87465.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP02]
gi|379627304|gb|EHZ91916.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP03]
gi|379629638|gb|EHZ94232.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP04]
gi|379632419|gb|EHZ96995.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae EU-NP05]
gi|379636641|gb|EIA01199.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA05578]
gi|379638822|gb|EIA03367.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
England14-9]
gi|379640458|gb|EIA04997.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA02506]
gi|379641559|gb|EIA06094.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA08825]
gi|381309561|gb|EIC50394.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SV36]
gi|381317477|gb|EIC58202.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SV35]
gi|381318481|gb|EIC59202.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 459-5]
gi|395574600|gb|EJG35177.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070035]
gi|395576065|gb|EJG36624.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070005]
gi|395584757|gb|EJG45149.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070335]
gi|395589615|gb|EJG49933.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070531]
gi|395590035|gb|EJG50350.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070425]
gi|395590966|gb|EJG51265.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070768]
gi|395596640|gb|EJG56856.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2080076]
gi|395602997|gb|EJG63138.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2071247]
gi|395604852|gb|EJG64984.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2071004]
gi|395608924|gb|EJG69014.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2080913]
gi|395610262|gb|EJG70341.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2081685]
gi|395868542|gb|EJG79659.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR27]
gi|395871405|gb|EJG82511.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR95]
gi|395875415|gb|EJG86496.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA52612]
gi|395877979|gb|EJG89048.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae SPAR55]
gi|395881913|gb|EJG92961.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17301]
gi|395882828|gb|EJG93872.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04216]
gi|395884115|gb|EJG95157.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA04672]
gi|395886319|gb|EJG97335.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58771]
gi|395887470|gb|EJG98485.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60190]
gi|395890679|gb|EJH01685.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA54354]
gi|395892955|gb|EJH03945.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA58581]
gi|395894968|gb|EJH05944.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA56113]
gi|395900054|gb|EJH10993.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA19998]
gi|395903400|gb|EJH14332.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA17484]
gi|395903514|gb|EJH14444.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60080]
gi|395905401|gb|EJH16306.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA62331]
gi|395908925|gb|EJH19802.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA60132]
gi|395911950|gb|EJH22814.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA62681]
gi|395914450|gb|EJH25294.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47562]
gi|404277829|emb|CCM08385.1| 16S rRNA processing protein [Streptococcus pneumoniae SPNA45]
gi|406369163|gb|AFS42853.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae
gamPNI0373]
gi|429317633|emb|CCP37421.1| 16S rRNA processing protein [Streptococcus pneumoniae SPN034156]
gi|429319175|emb|CCP32414.1| 16S rRNA processing protein [Streptococcus pneumoniae SPN034183]
gi|429320990|emb|CCP34388.1| 16S rRNA processing protein [Streptococcus pneumoniae SPN994039]
gi|429322810|emb|CCP30429.1| 16S rRNA processing protein [Streptococcus pneumoniae SPN994038]
gi|444253278|gb|ELU59736.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS125219]
gi|444256567|gb|ELU62905.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS70012]
gi|444261330|gb|ELU67634.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0002]
gi|444262445|gb|ELU68743.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0006]
gi|444262520|gb|ELU68816.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
PCS81218]
gi|444264176|gb|ELU70280.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0007]
gi|444267931|gb|ELU73814.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0008]
gi|444269183|gb|ELU74998.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0010]
gi|444270191|gb|ELU75976.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0009]
gi|444275218|gb|ELU80845.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0153]
gi|444276690|gb|ELU82233.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0076]
gi|444280793|gb|ELU86144.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0199]
gi|444285413|gb|ELU90479.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0360]
gi|444286172|gb|ELU91170.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0427]
gi|444288048|gb|ELU92951.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae PNI0446]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|417917253|ref|ZP_12560815.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
SK236]
gi|342830902|gb|EGU65227.1| 16S rRNA processing protein RimM [Streptococcus parasanguinis
SK236]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E R V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDRFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K++ I+ F+ + + G +L E D +LEDGEFY +++G+ V E
Sbjct: 56 HRKHKNFDIIKFKDMYHINAIEKFKGFSLKVAEEDLTDLEDGEFYYHEIIGLDVY--END 113
Query: 194 ELVGTVVNVFNSGANDL 210
+L+G + + GAND+
Sbjct: 114 QLIGQIKEILQPGANDV 130
>gi|29376428|ref|NP_815582.1| 16S rRNA processing protein RimM [Enterococcus faecalis V583]
gi|227519247|ref|ZP_03949296.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0104]
gi|227555546|ref|ZP_03985593.1| 16S rRNA processing protein RimM [Enterococcus faecalis HH22]
gi|256961602|ref|ZP_05565773.1| 16S rRNA-processing protein [Enterococcus faecalis Merz96]
gi|257419593|ref|ZP_05596587.1| 16S rRNA-processing protein [Enterococcus faecalis T11]
gi|293384455|ref|ZP_06630335.1| 16S rRNA processing protein RimM [Enterococcus faecalis R712]
gi|293389164|ref|ZP_06633629.1| 16S rRNA processing protein RimM [Enterococcus faecalis S613]
gi|312908378|ref|ZP_07767341.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 512]
gi|312910550|ref|ZP_07769392.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 516]
gi|422702066|ref|ZP_16759906.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1342]
gi|422713216|ref|ZP_16769969.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309A]
gi|422717247|ref|ZP_16773937.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309B]
gi|424678920|ref|ZP_18115757.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV103]
gi|424681777|ref|ZP_18118563.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV116]
gi|424684560|ref|ZP_18121271.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV129]
gi|424687733|ref|ZP_18124362.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV25]
gi|424690984|ref|ZP_18127511.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV31]
gi|424694704|ref|ZP_18131100.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV37]
gi|424697277|ref|ZP_18133607.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV41]
gi|424702135|ref|ZP_18138298.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV62]
gi|424704355|ref|ZP_18140457.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV63]
gi|424712821|ref|ZP_18144990.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV65]
gi|424715934|ref|ZP_18145256.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV68]
gi|424722326|ref|ZP_18151390.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV72]
gi|424724502|ref|ZP_18153445.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV73]
gi|424726696|ref|ZP_18155350.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV81]
gi|424740449|ref|ZP_18168831.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV85]
gi|424755233|ref|ZP_18183118.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV93]
gi|48474386|sp|Q833P4.1|RIMM_ENTFA RecName: Full=Ribosome maturation factor RimM
gi|29343892|gb|AAO81652.1| 16S rRNA processing protein RimM [Enterococcus faecalis V583]
gi|227073303|gb|EEI11266.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0104]
gi|227175322|gb|EEI56294.1| 16S rRNA processing protein RimM [Enterococcus faecalis HH22]
gi|256952098|gb|EEU68730.1| 16S rRNA-processing protein [Enterococcus faecalis Merz96]
gi|257161421|gb|EEU91381.1| 16S rRNA-processing protein [Enterococcus faecalis T11]
gi|291078238|gb|EFE15602.1| 16S rRNA processing protein RimM [Enterococcus faecalis R712]
gi|291081503|gb|EFE18466.1| 16S rRNA processing protein RimM [Enterococcus faecalis S613]
gi|310625598|gb|EFQ08881.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 512]
gi|311289098|gb|EFQ67654.1| 16S rRNA processing protein RimM [Enterococcus faecalis DAPTO 516]
gi|315169547|gb|EFU13564.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX1342]
gi|315574505|gb|EFU86696.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309B]
gi|315581833|gb|EFU94024.1| 16S rRNA processing protein RimM [Enterococcus faecalis TX0309A]
gi|402350245|gb|EJU85150.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV103]
gi|402350461|gb|EJU85364.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV116]
gi|402360896|gb|EJU95489.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV129]
gi|402363050|gb|EJU97559.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV31]
gi|402363525|gb|EJU98003.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV25]
gi|402370141|gb|EJV04381.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV62]
gi|402370250|gb|EJV04473.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV37]
gi|402376215|gb|EJV10174.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV41]
gi|402379698|gb|EJV13490.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV65]
gi|402382444|gb|EJV16111.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV63]
gi|402389208|gb|EJV22609.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV68]
gi|402389333|gb|EJV22732.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV72]
gi|402394773|gb|EJV27923.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV73]
gi|402398772|gb|EJV31692.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV81]
gi|402401106|gb|EJV33899.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV93]
gi|402402113|gb|EJV34846.1| 16S rRNA processing protein RimM [Enterococcus faecalis ERV85]
Length = 174
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D+++VG + + G++GE+ V TDFPE R+ L Q+ ++ E+ + R+H
Sbjct: 3 DYLNVGKIVNTQGIKGEVRVISKTDFPEERYQKGAMLLLFQE---KKAPIELVVKSHRKH 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
IL+FEG + L + + EL + EFY ++G V ETG
Sbjct: 60 KNFD--ILSFEGHPNINDVEKYRDGILKVAKDNLAELAEDEFYYHQIIGA-TVYDETGSE 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + + + GAND V V++ ++ + +P++E +V VD+
Sbjct: 117 LGKIKEILSPGAND---------VWVVQRPKKKD----------LLLPYIEGVVTKVDVE 157
Query: 256 GREMQITPPKGLLE 269
+ + + P+GL++
Sbjct: 158 NQRIDVDIPEGLID 171
>gi|325263006|ref|ZP_08129742.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
gi|324032100|gb|EGB93379.1| 16S rRNA processing protein RimM [Clostridium sp. D5]
Length = 168
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 46/201 (22%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH- 135
F+ VG + S HG++GE+ V P+TD RF +++++V L G+EH
Sbjct: 4 FLQVGVISSTHGIRGEVKVFPTTD-DAARF---------------KSLKQVILDTGKEHI 47
Query: 136 ----PGQKSW----ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRV 187
G K + I+ F+GID + G LL D LE+ E+Y DL+GM+V
Sbjct: 48 PMEIQGVKFFKQFVIVKFKGIDNINDVEKYKGKRLLVDREDAVSLEEDEYYIADLIGMKV 107
Query: 188 VMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEE 247
+E GE G + +V +GAN+ V V+E + V IP + +
Sbjct: 108 YTEE-GEF-GMLKDVIETGANE---------VYVVESPDHGE----------VLIPAIHD 146
Query: 248 IVPIVDMNGREMQITPPKGLL 268
+ V++ + M++ +GL+
Sbjct: 147 CILDVNVEEQTMKVHLLEGLI 167
>gi|168486209|ref|ZP_02710717.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1087-00]
gi|168490867|ref|ZP_02715010.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC0288-04]
gi|418184544|ref|ZP_12821092.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47283]
gi|418193413|ref|ZP_12829906.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47439]
gi|419492922|ref|ZP_14032649.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47210]
gi|419510064|ref|ZP_14049708.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP141]
gi|419529887|ref|ZP_14069418.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40028]
gi|421212776|ref|ZP_15669738.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070108]
gi|421214963|ref|ZP_15671894.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070109]
gi|183570742|gb|EDT91270.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC1087-00]
gi|183574762|gb|EDT95290.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae
CDC0288-04]
gi|353852142|gb|EHE32132.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47283]
gi|353860136|gb|EHE40083.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47439]
gi|379574627|gb|EHZ39565.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA40028]
gi|379594960|gb|EHZ59769.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae GA47210]
gi|379633257|gb|EHZ97826.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae NP141]
gi|395581183|gb|EJG41656.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070108]
gi|395582522|gb|EJG42984.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae 2070109]
Length = 172
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
>gi|441515337|ref|ZP_20997141.1| ribosome maturation factor RimM [Gordonia amicalis NBRC 100051]
gi|441449899|dbj|GAC55102.1| ribosome maturation factor RimM [Gordonia amicalis NBRC 100051]
Length = 177
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+D V VG V HG++GE+ V TD P+LRF R G E RE + RE
Sbjct: 1 MDLV-VGRVVKSHGIRGELVVDVRTDNPDLRFARGAVLRGRLPRGGGE--REFTVTAARE 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREG-DRPELEDGEFYTRDLVGMRVVMKETG 193
H G+ +++ +G+ + + A L G+ L P + EFY +L G+ V + + G
Sbjct: 58 HSGR--LLVSLDGVASRDAADALRGTLFLIDSSLVEPSDDPDEFYDHELEGVPVQLTD-G 114
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
VG V +V + +LL V R V IPFV EIVP V
Sbjct: 115 TEVGVVESVLHMPGGELLAV-------------------RTPDKREVLIPFVREIVPTVT 155
Query: 254 MNGREM-QITPPKGLLE 269
RE+ I PP+GLL+
Sbjct: 156 ---RELIVIDPPEGLLD 169
>gi|427392692|ref|ZP_18886697.1| 16S rRNA processing protein RimM [Alloiococcus otitis ATCC 51267]
gi|425731202|gb|EKU94023.1| 16S rRNA processing protein RimM [Alloiococcus otitis ATCC 51267]
Length = 174
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGT-RWLRQQVLGRETIREVKLIDGRE 134
++ VG + + HG++GE+ V+ T +PE R+ WL Q G + + V +
Sbjct: 3 EYYRVGDIVNTHGIKGEVRVQSVTSYPEERYQKGQVLTWLNQA--GEQALDLVV----QA 56
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTL--LAREGDRPELEDGEFYTRDLVGMRVVMKE 191
H K++ +LTFEG + + VG +L A + D + + G FY D+VG++VV E
Sbjct: 57 HRLHKNFHLLTFEGYSNINEVEAFVGGSLNIEASQVDDFDFDQGVFYQHDIVGLKVV-DE 115
Query: 192 TGELVGTVVNVFNSGANDL 210
TG+ +G V + + AND+
Sbjct: 116 TGQPLGQVKEIIETPANDV 134
>gi|207743715|ref|YP_002260107.1| 16s rrna processing protein rimm [Ralstonia solanacearum IPO1609]
gi|206595114|emb|CAQ62041.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
IPO1609]
Length = 184
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 85/190 (44%), Gaps = 29/190 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETI----REVKLID 131
D V+VGYV +G++G I V+P D L GT WL+ G + R + +
Sbjct: 14 DLVEVGYVGGAYGIRGWIKVQPHGDAEALLHA--GTWWLKPAA-GAPAVSSDWRVLPVGT 70
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
REH G S + + A L G + D P D EFY DL+G VV E
Sbjct: 71 SREHSG--SVVAGSPAVPDRNVAEALRGCAVWVSRADFPAPADDEFYWVDLIGSAVV-NE 127
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
E +GTV + ++GA+ +L + V EG E RLV PFVE V
Sbjct: 128 QQESLGTVAGLLDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKS 168
Query: 252 VDMNGREMQI 261
VD+ G+ + +
Sbjct: 169 VDVAGKRIVV 178
>gi|422884074|ref|ZP_16930523.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK49]
gi|332362172|gb|EGJ39974.1| 16S rRNA processing protein RimM [Streptococcus sanguinis SK49]
Length = 172
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 27/198 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + GLQGE+ V TDF E RF T L + R V ++
Sbjct: 1 MNYFNVGKIVNTQGLQGEMRVLSVTDFAEERFKKGNT-----LALFDKKDRFVMDVEIAS 55
Query: 135 HPGQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H K++ I+ F+G+ + TL RE D +LEDGEFY +++G+ V E
Sbjct: 56 HRKVKNFDIIKFKGMYHINDIEKFRDFTLKVREEDLTDLEDGEFYYHEIIGLEVY--EDD 113
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
L+G + + GAND+ V R + +P++ +V +D
Sbjct: 114 VLLGRIKEILQPGANDVWVV-------------------KRKGKRDLLLPYIPPVVLGID 154
Query: 254 MNGREMQITPPKGLLELN 271
+ + + P+GL + N
Sbjct: 155 IEQGRVDVEIPEGLDDEN 172
>gi|339324993|ref|YP_004684686.1| 16S rRNA-processing protein RimM [Cupriavidus necator N-1]
gi|338165150|gb|AEI76205.1| 16S rRNA processing protein RimM [Cupriavidus necator N-1]
Length = 222
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 85/195 (43%), Gaps = 29/195 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW---------LRQQVLGRETIRE 126
D V+VGY+ + +G++G I V P D + RW L R
Sbjct: 42 DLVEVGYIGAAYGIRGWIKVLPHAD--DASALLHARRWWLLAPPQAGLVVADASRAQPVC 99
Query: 127 VKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMR 186
VK+ REH G + + G+ A L G + R D P E+ EFY DL+G
Sbjct: 100 VKIAQSREHSG--TVVAQASGVADRNLAEALKGRRVWIRRADFPAPEEDEFYWVDLIGC- 156
Query: 187 VVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVE 246
V E GEL+G V + ++GA+ +L V C + +G A RL IPFV+
Sbjct: 157 TVSNEQGELLGEVSGLIDNGAHQILQVACV----LPDGK---------AGERL--IPFVD 201
Query: 247 EIVPIVDMNGREMQI 261
+ VD GR + +
Sbjct: 202 AFLRSVDTAGRRIVV 216
>gi|376261086|ref|YP_005147806.1| 16S rRNA processing protein RimM [Clostridium sp. BNL1100]
gi|373945080|gb|AEY66001.1| 16S rRNA processing protein RimM [Clostridium sp. BNL1100]
Length = 169
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 33/198 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL---RQQVLGRETIREVKLID 131
L+++ VG + + HG++GE+ TD P+ RF +W+ + L + I VK
Sbjct: 2 LEYLIVGQLVNTHGVKGELKATAQTDDPQ-RFKK--LKWVYIDKNGSLEKYNISGVKFF- 57
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
++ I+ FEGID++E+A L G + + +L F+ D++G++ V E
Sbjct: 58 ------KQFVIIKFEGIDSIEEAEKLKGFYIKVDRANAVKLPKNSFFITDIIGLK-VYDE 110
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
+L+G + +V +G+ND+ V D+ + + IP ++ +V
Sbjct: 111 NNQLLGELKDVIQTGSNDVYVV-------------------RDSESKEILIPALKSVVKE 151
Query: 252 VDMNGREMQITPPKGLLE 269
+ + ++ + PKGLL+
Sbjct: 152 ISIEEGKISVILPKGLLD 169
>gi|365853517|ref|ZP_09393784.1| 16S rRNA processing protein RimM [Lactobacillus parafarraginis
F0439]
gi|363712142|gb|EHL95841.1| 16S rRNA processing protein RimM [Lactobacillus parafarraginis
F0439]
Length = 180
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ ++G + + GL+GE+ V TDFPE RF T + ++ E + +++ R+
Sbjct: 5 MNYYNIGKIVNTQGLKGEVRVISITDFPEKRFVKGNT--IYAKLPKSEKMMALQIDGVRK 62
Query: 135 HPGQKSWILT-FEGIDTVEQARPLVGSTLLAREGDRPE--LEDGEFYTRDLVGMRVVMKE 191
H KS+IL F+G ++ L STL E E L+ GE+Y ++G+ V +
Sbjct: 63 H---KSFILLHFKGYPSINDVEFLKPSTLFVDETSLSEDDLKPGEYYYHQIIGLD-VFDD 118
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
G+ +G V + + GAND+ V + SD + +P ++ ++
Sbjct: 119 NGQKIGQVKEILSPGANDVWVVQ--------------RPAKSD-----LLLPKIDSVIKK 159
Query: 252 VDMNGREMQITPPKGL 267
VD++ + + ++ P+GL
Sbjct: 160 VDLDQKRIDVSIPEGL 175
>gi|346991535|ref|ZP_08859607.1| 16S rRNA-processing protein RimM [Ruegeria sp. TW15]
Length = 167
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 30/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPE-LRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
D + VG + +G++GE+ +K PE + +P T + R +K
Sbjct: 3 DLICVGSIAGSYGVRGEVRLKSFCAVPEDIEGYSPLTDETGKDRYPVVLTRAIK------ 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
+ G++T E+A L G L AR P L D EFY DL+G+ V G
Sbjct: 57 ----NGFAARLGGVETKEEADALNGLRLYARRDQLPSLPDDEFYHTDLIGLE-VYDTGGT 111
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
L+G V +V N GA DLL E A+ V +PF E VP VD+
Sbjct: 112 LLGRVKSVQNHGAADLL---------------ELHGPGLKAT---VLLPFTLESVPTVDL 153
Query: 255 NGREMQITPPKGLL 268
+ + PP+GLL
Sbjct: 154 DKGRIIADPPEGLL 167
>gi|170723317|ref|YP_001751005.1| 16S rRNA-processing protein RimM [Pseudomonas putida W619]
gi|229564325|sp|B1JDE4.1|RIMM_PSEPW RecName: Full=Ribosome maturation factor RimM
gi|169761320|gb|ACA74636.1| 16S rRNA processing protein RimM [Pseudomonas putida W619]
Length = 178
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 11/147 (7%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRW-LRQQVLGRETIREVKLIDGRE 134
D + VG ++SVHG++GE+ V TD E P RW LR + +++V+L+ GR
Sbjct: 10 DLIVVGKIFSVHGVRGEVKVYSFTDPIENLLDYP--RWTLRHE----GKVKQVELVSGR- 62
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
QK ++ +G+D ++AR L G + P L E+Y L G++V+ ++ +
Sbjct: 63 -GSQKGLVVKLKGLDDRDEARLLSGFEICIPRSLLPNLAADEYYWYQLQGLKVINQDE-Q 120
Query: 195 LVGTVVNVFNSGANDLLHVM-CYSSVN 220
L G V ++ +GAND++ V C S++
Sbjct: 121 LFGKVDHLLETGANDVMVVKPCAGSLD 147
>gi|291514579|emb|CBK63789.1| 16S rRNA processing protein RimM [Alistipes shahii WAL 8301]
Length = 187
Score = 65.9 bits (159), Expect = 8e-08, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 87/213 (40%), Gaps = 49/213 (23%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGR-EHP 136
V G + + G +G + + FPE FTT + L EV L R E
Sbjct: 3 VPAGRINKLFGTEGGVMLSLYPAFPE-DFTTDTPLRVTIDAL------EVPLWCERFERR 55
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE----- 191
GQ TF DT +A+ LVG L R E +D EFY DL+G VV +E
Sbjct: 56 GQSGATATFADFDTERRAQELVG--LEFRIEMNGEEDDDEFYLEDLIGFAVVAEEAGASS 113
Query: 192 --------------TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASG 237
+G+L GTV + ++S AN L + + G
Sbjct: 114 GRAATAAGETGACASGKLCGTVTDYYDSDANPLFEL--------------------EIGG 153
Query: 238 RLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
R V +P VEE + +D GR M + P+GLL L
Sbjct: 154 RQVLVPAVEEFIARIDFEGRTMHLVLPEGLLTL 186
>gi|160933332|ref|ZP_02080720.1| hypothetical protein CLOLEP_02177 [Clostridium leptum DSM 753]
gi|156867209|gb|EDO60581.1| 16S rRNA processing protein RimM [Clostridium leptum DSM 753]
Length = 171
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+++ G + GL+GEI V P D E +++ E +E+K++ R
Sbjct: 5 YLEAGKITGTQGLRGEIRVDPWCDSAEALCRL-------KRLYFEEGKQELKVVSARTQ- 56
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
++ IL EG+D++EQA L L A D +LE G ++ +DL+G++ V ++G
Sbjct: 57 -KRMAILKLEGVDSIEQADLLRNRVLYASRQDF-KLEPGRYFIQDLLGVKAVDADSGRDY 114
Query: 197 GTVVNVFNSGANDLLHV 213
G V +V +GAND+ +
Sbjct: 115 GAVTDVLKTGANDVYEI 131
>gi|297242900|ref|ZP_06926838.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
gi|296889111|gb|EFH27845.1| 16S rRNA-processing protein rimM [Gardnerella vaginalis AMD]
Length = 199
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + V + GL+GE++V+ TD P RF PG + + RE + + R
Sbjct: 19 DLLRVCRIGKAQGLKGEVTVQIFTDEPYERFE-PG-----NVLCTADGEREFVIENARTF 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGE 194
+ WIL FE A L G+ L D EL + +Y +DLVG++ + E +
Sbjct: 73 --KNRWILLFEESQNRNDAEALNGTELYVHAEDAQELAAENAWYIKDLVGLQARLCEENQ 130
Query: 195 L------VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
L +G VV+V + GA LL + + D + +PFVE I
Sbjct: 131 LGLTPKVIGKVVDVLD-GAQSLLKIRLDHPI--------------DEENKTALVPFVEAI 175
Query: 249 VPIVDMNGREMQITPPKGLL 268
VP VD+ + I PP GL+
Sbjct: 176 VPEVDVANGYLTIDPPGGLI 195
>gi|326204804|ref|ZP_08194658.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
gi|325985016|gb|EGD45858.1| 16S rRNA processing protein RimM [Clostridium papyrosolvens DSM
2782]
Length = 169
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL---RQQVLGRETIREVKLID 131
L+++ VG + + HG++GE+ TD P+ RF +W+ + L + I VK
Sbjct: 2 LEYLIVGQLVNTHGVKGELKATAQTDDPQ-RFRK--LKWVYIDKNGSLEKCNISGVKFF- 57
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
++ I+ FEGID++E+A L G L + +L + F+ D++G++ V E
Sbjct: 58 ------KQFVIIKFEGIDSIEEAEKLKGFYLKVDRANAVKLPENSFFIADILGLK-VYDE 110
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
+L+G + +V +G+ND+ V D+ + + +P ++ +V
Sbjct: 111 NNQLLGELKDVIQTGSNDVYVV-------------------RDSEAKEILVPALKSVVKE 151
Query: 252 VDMNGREMQITPPKGLLE 269
+ + ++ + PKGLL+
Sbjct: 152 ISIEEGKISVILPKGLLD 169
>gi|283782824|ref|YP_003373578.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
gi|283441158|gb|ADB13624.1| 16S rRNA processing protein RimM [Gardnerella vaginalis 409-05]
Length = 199
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 30/200 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D + V + GL+GE++V+ TD P RF PG + + RE + + R
Sbjct: 19 DLLRVCRIGKAQGLKGEVTVQIFTDEPYERFE-PG-----NVLCTADGEREFVIENARTF 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGE 194
+ WIL FE A L G+ L D EL + +Y +DLVG++ + E +
Sbjct: 73 --KNRWILLFEESQNRNDAEALNGTELYVHAEDAQELAAENAWYIKDLVGLQARLCEENQ 130
Query: 195 L------VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248
L +G VV+V + GA LL + + + D + +PFVE +
Sbjct: 131 LGLPACTIGKVVDVLD-GAQSLLKIRLNNPI--------------DDDNKTALVPFVEAL 175
Query: 249 VPIVDMNGREMQITPPKGLL 268
VP VD+ + I PP GL+
Sbjct: 176 VPEVDVANGYLTIDPPGGLI 195
>gi|81428332|ref|YP_395332.1| 16S rRNA-processing protein RimM [Lactobacillus sakei subsp. sakei
23K]
gi|109893021|sp|Q38XQ8.1|RIMM_LACSS RecName: Full=Ribosome maturation factor RimM
gi|78609974|emb|CAI55021.1| 16S rRNA processing protein, RimM [Lactobacillus sakei subsp. sakei
23K]
Length = 176
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ VG + + HG++GE+ V +TDF E RF GT + G + V + R+H
Sbjct: 5 YYQVGKIVNTHGIRGEVRVIATTDFTEERFKK-GTHLAVEMPNG---LTPVTVSAMRQH- 59
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRP-ELEDGEFYTRDLVGMRVVMKETGEL 195
++ ++L FEG+ + G L +R +LED E+Y D++G+ V+ + G
Sbjct: 60 -KQFYLLQFEGLGNINDVELFKGHNLKIAASERDDQLEDDEYYYGDIIGLEVIEESDGTS 118
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
G V + + G ND V VI+ SD + +PF++ ++ +D+
Sbjct: 119 YGKVSEIIDPGPND---------VWVIK-----RRGRSD-----LLLPFLKSVIKKIDIE 159
Query: 256 GREMQITPPKGLLE 269
+ + P+GL++
Sbjct: 160 AGKAYVEVPEGLID 173
>gi|357588955|ref|ZP_09127621.1| ribosome maturation factor [Corynebacterium nuruki S6-4]
Length = 191
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 11/196 (5%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
+ +G V HG++GEI V P+TD P+ RF RQ G RE+ L P
Sbjct: 4 LQIGRVIKPHGVRGEIVVDPTTDDPDARFAVGTVLTGRQGGRGGRGGRELSLTVASVRPH 63
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE---FYTRDLVGMRVVMKETGE 194
Q ++TF+ + A + G A P + D + +Y +L G+ V+ +
Sbjct: 64 QGRLLITFDEVPDRTAAESMRGLKFFA-----PPVFDADDDGYYDHELEGLHVLDCGPVD 118
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+ + + + V + + GR V IPF IVPIVD+
Sbjct: 119 AATASARAYEGAQPEPVDI---GEVTGVTHGPAGTLLEVAVDGRTVLIPFRHAIVPIVDL 175
Query: 255 NGREMQITPPKGLLEL 270
+ + ITPP+GLLEL
Sbjct: 176 DNGALVITPPEGLLEL 191
>gi|307943455|ref|ZP_07658799.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
gi|307773085|gb|EFO32302.1| 16S rRNA processing protein RimM [Roseibium sp. TrichSKD4]
Length = 179
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 85 SVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILT 144
+ HG++GE+ VK D P L FT G + +T EV+ R + +
Sbjct: 16 AAHGIRGEVRVKAFGDDP-LSFTDYGELITKSG----DTTFEVE----RARIQKTVVVTK 66
Query: 145 FEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFN 204
F+GI+ A L G L PELED EFY DLVGM V E +L G VV V +
Sbjct: 67 FKGINDRNAAEELNGVELFVHRDQLPELEDDEFYHDDLVGMAVTDLEGTDL-GKVVMVQD 125
Query: 205 SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPP 264
GA DLL V G ++PF + VP +D+ R ++ P
Sbjct: 126 FGAGDLLEV-------------------RPKRGPTFYMPFSKAFVPEIDIENRVVKADLP 166
Query: 265 KGLLELNLRTDER 277
++ +ER
Sbjct: 167 DDYFSVSSSDEER 179
>gi|213624487|gb|AAI71173.1| UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Xenopus
(Silurana) tropicalis]
gi|213627350|gb|AAI71160.1| UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 511
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 50/238 (21%)
Query: 458 SMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTE--QNKFKILM 515
++P ++ + K F D+ +F D V E+ LP V ++K K+ M
Sbjct: 168 TVPWYIMTSEFTLGPTRKFFEDHAYFGLDRSDVVMFEQRMLPAVGFDGAAILEDKAKLAM 227
Query: 516 KSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKS 574
AP G+GG++ LS + I+++++ G++Y+ + C N + + +F+GF S
Sbjct: 228 --------APDGNGGLYRALSDNRILEDMEGRGIQYVHVYCVDNILVKMADPVFIGFCVS 279
Query: 575 CGADIG----------------------FQISEYAKHSEERF-----NTMLSMNVMKKLT 607
GAD G +Q+ EY++ S E N L+ +
Sbjct: 280 KGADCGAKVVEKGYPAEPVGVVCRVDGVYQVVEYSEISPETAEKRNPNGALTFTA-GNIC 338
Query: 608 NHINKLEFYAT------PKLNSHVE-----KVDKEFIDVIPAAPNSYELRSSIYSCLN 654
NH + F P+LN HV VD E V P +PN ++ ++
Sbjct: 339 NHFFTVPFLRAVIGSLEPRLNYHVAIKKVPYVDNEGNLVKPTSPNGIKMEKFVFDVFQ 396
>gi|167756886|ref|ZP_02429013.1| hypothetical protein CLORAM_02435 [Clostridium ramosum DSM 1402]
gi|237734596|ref|ZP_04565077.1| ribosome maturation factor rimM [Mollicutes bacterium D7]
gi|167703061|gb|EDS17640.1| 16S rRNA processing protein RimM [Clostridium ramosum DSM 1402]
gi|229382416|gb|EEO32507.1| ribosome maturation factor rimM [Coprobacillus sp. D7]
Length = 169
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
++ + +G + HGL+GE+ ++ ++DF + RF +R Q ++ + K+I R
Sbjct: 1 MEKLKIGKIVGTHGLKGELKIRSNSDFADKRFKKGNEIIIRYQ--NQDLV--YKIITSRI 56
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H G +++++F + +GS + + D D FYT DL+GM+VV E G
Sbjct: 57 HKG--NYLVSFRDNQDINLVEKYIGSFVYGYKDDELLDADEYFYT-DLIGMQVVSTE-GT 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V +++++ +D+L++ D +G+ V IP+V+ + VD+
Sbjct: 113 KIGPVTSIYDNTRHDILNI--------------------DHNGKNVAIPYVDAFIKDVDV 152
Query: 255 NGREMQITPPKGLLE 269
+ + + KGL++
Sbjct: 153 EKKIIVVMLIKGLID 167
>gi|91776685|ref|YP_546441.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
gi|91710672|gb|ABE50600.1| 16S rRNA processing protein RimM [Methylobacillus flagellatus KT]
Length = 164
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 36/188 (19%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR------ETIREVKLIDGR 133
+G + + +G+ G + V+P+T++ + F RW+ LGR E + ++ +
Sbjct: 1 MGRIVAPYGVYGWVKVQPATEYVDSLFDY--GRWM----LGRGDPKQPEQWQSCEVEKAK 54
Query: 134 EHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H ++ +GID +QA G + + PE E+GE+Y DL+G++V ++
Sbjct: 55 VH--NDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELPEPEEGEYYWSDLIGLQVRNQQEV 112
Query: 194 ELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+ G VV+VF +GAND+L V++G E RLV PF+ ++V VD
Sbjct: 113 DF-GQVVDVFATGANDVL---------VVKGDRE----------RLV--PFIGQVVLEVD 150
Query: 254 MNGREMQI 261
+G+ M +
Sbjct: 151 TDGKTMLV 158
>gi|379058002|ref|ZP_09848528.1| 16S rRNA processing protein RimM [Serinicoccus profundi MCCC
1A05965]
Length = 173
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQV-LGRETIREVKLIDGREHPGQ 138
V V HGL+GE++V+ TD P RF PG ++ G T+ V++ G
Sbjct: 7 VARVGKPHGLRGEVTVQVHTDDPTGRFE-PGASFVTDPPERGPLTLTTVRVHQG------ 59
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLARE--GDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+++L FEG A L G+ LL + G E D + DL+G VV+ + G V
Sbjct: 60 -TYLLGFEGHTDRTAAESLRGTRLLVDDEAGVPDEDPDEGWREEDLLGFSVVLTD-GRRV 117
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+ + DLL V + +++ PFVEEIVP VD
Sbjct: 118 GEVIALHVRPVQDLLEVRTPAGTSLV--------------------PFVEEIVPEVDEES 157
Query: 257 REMQITPPKGLLEL 270
R + + PP GLLEL
Sbjct: 158 RTVVLDPPPGLLEL 171
>gi|77457247|ref|YP_346752.1| 16S rRNA-processing protein RimM [Pseudomonas fluorescens Pf0-1]
gi|109893035|sp|Q3KHJ3.1|RIMM_PSEPF RecName: Full=Ribosome maturation factor RimM
gi|77381250|gb|ABA72763.1| 16S rRNA processing protein [Pseudomonas fluorescens Pf0-1]
Length = 178
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 31/190 (16%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG ++SVHG++GE+ V FT P L R L RE +++V+L+ G
Sbjct: 10 DLIVVGKIFSVHGVRGEVKV--------FSFTDPIENLLGYRNWTLRREGVVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R QK ++ +G+D ++AR L G + P+L E+Y L G+ V+ ++
Sbjct: 62 RST--QKDLVVKLKGLDDRDEARLLSGYEICIPRSLLPDLTADEYYWYQLEGLSVINQDE 119
Query: 193 GELVGTVVNVFNSGANDLLHVM-CYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
+L G V ++ +GAND+L V C S+ D RL +P+ E+ V
Sbjct: 120 -QLFGKVDHLLETGANDVLVVKPCVGSL--------------DDRERL--LPYTEQCVLA 162
Query: 252 VDMNGREMQI 261
+D+ M++
Sbjct: 163 IDLEAGVMRV 172
>gi|398969188|ref|ZP_10682762.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM30]
gi|398142541|gb|EJM31435.1| 16S rRNA processing protein RimM [Pseudomonas sp. GM30]
Length = 178
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL--RQQVLGRE-TIREVKLIDG 132
D + VG ++SVHG++GE+ V FT P L R L RE +++V+L+ G
Sbjct: 10 DLIVVGKIFSVHGVRGEVKV--------FSFTDPIENLLNYRNWTLRREGVVKQVELVSG 61
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
R QK + +G+D ++AR L G + P L E+Y L G+ V+ ++
Sbjct: 62 RST--QKDLVAKLKGLDDRDEARLLSGYEICISRSLLPNLTGDEYYWYQLQGLSVINQDE 119
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
+L G V ++ +GAND+L V + + + D RL +P+ E+ V +
Sbjct: 120 -QLFGKVDHLLETGANDVLVV-------------KPCAGSLDDRERL--LPYTEQCVLAI 163
Query: 253 DMNGREMQI 261
D+ M++
Sbjct: 164 DLEAGVMRV 172
>gi|389690744|ref|ZP_10179637.1| 16S rRNA processing protein RimM [Microvirga sp. WSM3557]
gi|388588987|gb|EIM29276.1| 16S rRNA processing protein RimM [Microvirga sp. WSM3557]
Length = 187
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 30/197 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D V VG HGL+GE+ +K T P+ R + +K + R
Sbjct: 6 DLVLVGEFGRAHGLKGEVRLKSHTGDPQ------AIAQYRPLIASNGKTFSLKTV--RPA 57
Query: 136 PGQKSWILT--FEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKET 192
PG +L +G+ T E + L L + R+ P E+ EF DL+G+ V E
Sbjct: 58 PGAAPDLLIAIVDGVTTREASEALNRVQLYVERDKLPPPDEEDEFLLADLIGL-TVTSEA 116
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
G+++GTVV+V N G DLL + A G +PF + VP V
Sbjct: 117 GDMIGTVVDVPNYGGGDLLEI------------------APAQKGPTALLPFTKAFVPHV 158
Query: 253 DMNGREMQITPPKGLLE 269
D+ GR + PP L E
Sbjct: 159 DLAGRRIVAHPPDDLFE 175
>gi|339253446|ref|XP_003371946.1| UDP-N-acetylglucosamine diphosphorylase [Trichinella spiralis]
gi|316967718|gb|EFV52109.1| UDP-N-acetylglucosamine diphosphorylase [Trichinella spiralis]
Length = 552
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 461 LVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWE 520
L++V PA ++ EK F ++ +F D ++ F + +P S + K+L S
Sbjct: 238 LIMVSPAT-VRKTEKFFQEHSYFGLDKAQIHFFRQGAMPCFSFTK------KVLFDSVDA 290
Query: 521 TLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKSCGADI 579
AP G+GG+F+ LS N++ +++ G+E++ + C N +G+ +F G+ K AD
Sbjct: 291 IAMAPDGNGGMFAALSKSNLLDMMEKRGIEFVHVYCVDNILVRVGDPLFFGYCKYMKADC 350
Query: 580 GFQISEYAKHSEE 592
++ + A +E+
Sbjct: 351 ATKVIKKASPTEQ 363
>gi|320527193|ref|ZP_08028379.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
gi|320132384|gb|EFW24928.1| 16S rRNA processing protein RimM [Solobacterium moorei F0204]
Length = 169
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ ++ +G + + HG++GE+ ++ +DF E R+T + + E V + R+
Sbjct: 1 MAYICIGKIINTHGIKGEVKIESYSDFDEERYTKSKQVY----ICVDEKYLPVTVASYRK 56
Query: 135 HPG-QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETG 193
H G + + I+ VEQ + G + E DR +L+ GE+Y +DLVG+ VV E G
Sbjct: 57 HKGFPLVSFVDLQNINFVEQYK---GCEIYIDEADRKQLKKGEYYRKDLVGLTVV-DEEG 112
Query: 194 ELVGTVVNVFNS-GANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
VG +++V + GA + L + +E ++E V IP++ IV V
Sbjct: 113 ITVGKIISVEETLGAQNNLRLQ-------LEDAKE------------VLIPYIPMIVKNV 153
Query: 253 DMNGREMQITPPKGLL 268
D+ + M I GLL
Sbjct: 154 DLEKKVMTIHRMGGLL 169
>gi|149911443|ref|ZP_01900060.1| 16S rRNA-processing protein [Moritella sp. PE36]
gi|149805474|gb|EDM65481.1| 16S rRNA-processing protein [Moritella sp. PE36]
Length = 168
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 30/174 (17%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + +V+G++G + + TD PE F + WL +Q + EV L D + H K
Sbjct: 3 VGRLGAVYGIKGWMKINSFTDIPEGIFNY--SPWLIEQ---KGEWVEVALEDFKRH--GK 55
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
I GID E+A+ L G+ + P LED EFY RDL+G V + G +G V
Sbjct: 56 GLIAKLAGIDIREEAQSLTGAEIAINADQLPALED-EFYWRDLIGCS-VETDKGYTLGKV 113
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
++ +G+ND+L + ++A+DA G+ E +VP +D
Sbjct: 114 TDMMETGSNDVLVI---------------KANATDAFGK------KERLVPYLD 146
>gi|421899373|ref|ZP_16329738.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
MolK2]
gi|206590579|emb|CAQ37541.1| probable 16s rrna processing protein rimm [Ralstonia solanacearum
MolK2]
Length = 213
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI---DG 132
D V+VGYV +G++G I V+P D L GT WL+ + +++
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPHGDAEALLHA--GTWWLKPAAGAPAVSSDWRVLPVGTS 100
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
REH G S + + A L G + D P D EFY DL+G VV E
Sbjct: 101 REHSG--SVVAGSPAVPDRNVAEALRGCAVWVSRADFPAPADDEFYWVDLIGSAVV-NEQ 157
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
E +GTV + ++GA+ +L + V EG E RLV PFVE V V
Sbjct: 158 QESLGTVAGLLDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKSV 198
Query: 253 DMNGREMQI 261
D+ G+ + +
Sbjct: 199 DVAGKRIVV 207
>gi|254382008|ref|ZP_04997370.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
gi|194340915|gb|EDX21881.1| 16S rRNA processing protein [Streptomyces sp. Mg1]
Length = 196
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
V + HG++GE++V+ TD PELR G TI GR H G+
Sbjct: 5 VARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLETEPASAGPLTIET-----GRVHSGR- 58
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPEL--EDGEFYTRDLVGMRVVMKETGELVG 197
+L FEG+ A L L+A E D EL E+ E+Y L+ + VV+ E G +G
Sbjct: 59 -LLLRFEGVKDRTGAEALRNILLIA-EVDPTELPEEEDEYYDHQLMDLDVVL-EDGTEIG 115
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
+ + + + DL ++E + G V IPFVEEIV +D+ +
Sbjct: 116 RITEISHLPSQDLF---------IVERPD----------GTEVMIPFVEEIVAEIDLEEQ 156
Query: 258 EMQITPPKGLLE 269
ITPP GL++
Sbjct: 157 RCVITPPPGLID 168
>gi|83745801|ref|ZP_00942858.1| RimM [Ralstonia solanacearum UW551]
gi|83727491|gb|EAP74612.1| RimM [Ralstonia solanacearum UW551]
Length = 213
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLI---DG 132
D V+VGYV +G++G I V+P D L GT WL+ + +++
Sbjct: 43 DLVEVGYVGGAYGIRGWIKVQPHGDAEALLHA--GTWWLKPAAGAPAVSSDWRVLPVGTS 100
Query: 133 REHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKET 192
REH G S + + A L G + D P D EFY DL+G VV E
Sbjct: 101 REHSG--SVVAGSPAVPDRNVAEALRGCAVWVSRADFPAPADDEFYWVDLIGSAVV-NEQ 157
Query: 193 GELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252
E +GTV + ++GA+ +L + V EG E RLV PFVE V V
Sbjct: 158 QESLGTVAGLLDNGAHQILRI-------VDEGGTE----------RLV--PFVEVYVKSV 198
Query: 253 DMNGREMQI 261
D+ G+ + +
Sbjct: 199 DVAGKRIVV 207
>gi|52354762|gb|AAH82877.1| LOC494771 protein, partial [Xenopus laevis]
Length = 511
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 136/339 (40%), Gaps = 75/339 (22%)
Query: 366 LMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEGNECDPH 425
L++ S++ S G L S +++G H +++ K A++L+ G
Sbjct: 83 LLLGSVRHSSTGEL------------DSWERQGFHQIAQNKVAVLLLAG----GQGTRLG 126
Query: 426 SVVSESTANKSLALLQTLLS-DDQRFVKIENRAS--------MPLVLVLPALEMQMLEKL 476
+ + L +TL +R +++++ AS +P ++ + K
Sbjct: 127 VMYPKGMYRVGLPSAKTLYQIQAERILRVQHLASEQHGVSCIVPWYIMTSEFTLGPTRKF 186
Query: 477 FLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLS 536
F ++D+F + V E+ LP V K +++ + AP G+GG++ LS
Sbjct: 187 FEEHDYFGLERSDVIMFEQRMLPAVGFDG------KAILEDKAKLAMAPDGNGGLYRALS 240
Query: 537 SHNIIKNLDELGVEYIQI-CTANPRNAIGNSMFLGFVKSCGADIG--------------- 580
+ I+++++ G++YI + C N + + +F+GF S GAD G
Sbjct: 241 DNRILEDMEGRGIQYIHVYCVDNILVKMADPVFIGFCVSKGADCGAKVVEKGYPAEPVGV 300
Query: 581 -------FQISEYAKHSEERFNTMLSMNVMKKLT-------NHINKLEFYAT------PK 620
+Q+ EY++ S E T+ N LT NH + F P+
Sbjct: 301 VCQVDGIYQVVEYSEISPE---TVEKRNPDGSLTFSAGNICNHFFTVPFLRAVTGSLEPR 357
Query: 621 LNSHVE-----KVDKEFIDVIPAAPNSYELRSSIYSCLN 654
LN HV VD E V P PN ++ ++
Sbjct: 358 LNYHVAIKKIPYVDNEGNLVKPTRPNGIKMEKFVFDVFQ 396
>gi|350566791|ref|ZP_08935428.1| 16S rRNA processing protein RimM [Peptoniphilus indolicus ATCC
29427]
gi|348661453|gb|EGY78139.1| 16S rRNA processing protein RimM [Peptoniphilus indolicus ATCC
29427]
Length = 165
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 31/194 (15%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +G + + G++GE+ V P T E RF ++ ++ + IR+V++
Sbjct: 3 NYTVIGQIINTRGIKGELKVLPLTSRNE-RFNNLENVYIGDDLM-HQKIRKVQVT----- 55
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ L F+G++ + + + D+ ELE+GE++ D++G V K G+L
Sbjct: 56 --ERFVYLFFDGLNNINDVEKFKTCYIYVSDEDKIELEEGEYFISDIIGCE-VYKTDGQL 112
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG VV++ + AND V V+ G +E IP V E V +D+
Sbjct: 113 VGEVVDLIENPAND---------VYVVNGDKE------------YLIPQVSEFVKDIDVK 151
Query: 256 GREMQITPPKGLLE 269
+++ I P +G+LE
Sbjct: 152 SKKIIIEPIEGMLE 165
>gi|220928162|ref|YP_002505071.1| 16S rRNA-processing protein RimM [Clostridium cellulolyticum H10]
gi|254797746|sp|B8I7T4.1|RIMM_CLOCE RecName: Full=Ribosome maturation factor RimM
gi|219998490|gb|ACL75091.1| 16S rRNA processing protein RimM [Clostridium cellulolyticum H10]
Length = 169
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWL---RQQVLGRETIREVKLID 131
L+++ VG + + HG++GE+ TD P+ RF +W+ + L + I VK
Sbjct: 2 LEYLIVGQLINTHGVKGELKATSQTDDPQ-RFKK--LKWVYIDKNGSLEKYDINGVKFF- 57
Query: 132 GREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE 191
++ I+ F+G+D++E+A L G + + +L + F+ D++G++ V E
Sbjct: 58 ------KQFIIIKFQGVDSIEEAEKLKGFYIKVDRANAVKLPENSFFISDIIGLK-VYDE 110
Query: 192 TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPI 251
+L+G + +V +G+ND+ V D+ + + IP ++ +V
Sbjct: 111 NNQLLGELKDVIQTGSNDVYVV-------------------RDSDSKEILIPALKSVVKE 151
Query: 252 VDMNGREMQITPPKGLLE 269
V + ++ + PKGLL+
Sbjct: 152 VSIEEGKISVILPKGLLD 169
>gi|433632002|ref|YP_007265630.1| Putative 16s rRNA processing protein RimM [Mycobacterium canettii
CIPT 140070010]
gi|432163595|emb|CCK61015.1| Putative 16s rRNA processing protein RimM [Mycobacterium canettii
CIPT 140070010]
Length = 176
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 30/196 (15%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVL---GRETIREVKLIDG-REH 135
+G V HG+ GE+ V+ TD P RF PGTR LR + G E +I+ REH
Sbjct: 5 IGRVVKSHGVTGEVVVEIRTDDPADRFA-PGTR-LRAKGPREGGAEGSAVGYVIESVREH 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGE-FYTRDLVGMRVVMKETGE 194
G+ ++ G+ + A L GS + D P +++ + +Y LVG+ +V TG+
Sbjct: 63 GGR--LLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGL-MVQTVTGQ 119
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
VG V V ++ A +LL V S+E V +PFV IV V +
Sbjct: 120 GVGVVTEVVHTAAGELLAVK--------RDSDE------------VLVPFVRAIVTSVSL 159
Query: 255 NGREMQITPPKGLLEL 270
+ ++I PP GLL L
Sbjct: 160 DDSIIEIDPPHGLLNL 175
>gi|225854285|ref|YP_002735797.1| 16S rRNA-processing protein RimM [Streptococcus pneumoniae JJA]
gi|254797766|sp|C1CDC6.1|RIMM_STRZJ RecName: Full=Ribosome maturation factor RimM
gi|225722534|gb|ACO18387.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae JJA]
Length = 172
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ ++G + + GLQGE+ V TDF E RF + L E + V+ +
Sbjct: 1 MNYFNIGKIVNTQGLQGEMRVLSVTDFAEERFKKGA-----ELALFDEKDQFVQTVTIAS 55
Query: 135 HPGQKSW-ILTFEG---IDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMK 190
H QK++ I+ F+ I+T+E+ + G +L E D +L+DGEFY +++G+ V
Sbjct: 56 HRKQKNFDIIKFKDMYHINTIEKYK---GYSLKVAEEDLNDLDDGEFYYHEIIGLEVY-- 110
Query: 191 ETGELVGTVVNVFNSGANDL 210
E LVGT+ + GAND+
Sbjct: 111 EGDSLVGTIKEILQPGANDV 130
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,243,351,829
Number of Sequences: 23463169
Number of extensions: 430598418
Number of successful extensions: 1334461
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 3122
Number of HSP's that attempted gapping in prelim test: 1328832
Number of HSP's gapped (non-prelim): 3921
length of query: 668
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 519
effective length of database: 8,863,183,186
effective search space: 4599992073534
effective search space used: 4599992073534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)