BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005946
(668 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5GI62|RIMM_SYNPW Ribosome maturation factor RimM OS=Synechococcus sp. (strain
WH7803) GN=rimM PE=3 SV=1
Length = 175
Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V +V GL+GE+ V P++DFPE RFT PG+RWL+ + + RE++L GR+
Sbjct: 5 DWLPVGKVVAVQGLKGELRVNPASDFPE-RFTEPGSRWLKAR---GQAPREIELTSGRQL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G+++ + A LVG TL+ DRPEL +GEF+ DLVG+ + G+
Sbjct: 61 PGKSVFVVRFAGVESRDAAEALVGQTLMVPADDRPELAEGEFHLLDLVGLEARLSADGDA 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL V+E + GR + IPFVE IVP V +
Sbjct: 121 IGTVKDLI-SGGNDLL---------VLERPD----------GRTLMIPFVEAIVPDVHLE 160
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 161 QGWLRLTPPPGLLEL 175
>sp|B7K5W1|RIMM_CYAP8 Ribosome maturation factor RimM OS=Cyanothece sp. (strain PCC 8801)
GN=rimM PE=3 SV=1
Length = 186
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 15/195 (7%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + + GL+GE+ V S+DFPE RF PGTRWL Q R +I+EV+L+ GR P
Sbjct: 7 WLEIGRIVAAQGLKGELKVMSSSDFPE-RFEKPGTRWL--QSPDRLSIQEVELVRGRYVP 63
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ I QA L TLL DRP+L +GE++ DL+ + V ++TGE +
Sbjct: 64 GKNLYVIKLAEIADRTQAETLRDYTLLVPSSDRPQLNEGEYHVSDLINLTVYHQQTGEEI 123
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ ++G NDLL V +N + SE SS + V IPFV EIVP+VD+
Sbjct: 124 GVVTDMLSAG-NDLLEV----QLNTLNSSENTSS-------KKVLIPFVYEIVPVVDLVN 171
Query: 257 REMQITPPKGLLELN 271
+ ++I PP GLLEL+
Sbjct: 172 KRIEINPPVGLLELS 186
>sp|B2J3X9|RIMM_NOSP7 Ribosome maturation factor RimM OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=rimM PE=3 SV=1
Length = 235
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 119/211 (56%), Gaps = 20/211 (9%)
Query: 65 QEIVETSASGL----DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG 120
Q IV + S + +++++G + S GL GE+ V P +DFPE RF PG RWL L
Sbjct: 40 QPIVPNTQSPVPNLDNWLEIGKIVSPQGLSGELKVYPVSDFPE-RFEVPGKRWLLH--LD 96
Query: 121 RETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTR 180
+ ++L+ GR + +++ G++ +QA L G L+ DRP+L + E++
Sbjct: 97 GTEPQPIQLLTGRYISNKNLYVIKLAGVENCDQAEALRGCKLMVPASDRPQLAEDEYHVL 156
Query: 181 DLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLV 240
DL+G+ V M+ +GELVGTVV++ +G NDLL V + S +D + V
Sbjct: 157 DLIGLEVFMQASGELVGTVVDIIPAG-NDLLEVKLHPSF------------TTDKKQKTV 203
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLELN 271
IPFVE I P+VD+ ++ITPP GLLE+N
Sbjct: 204 LIPFVEAIAPVVDLKSNRIEITPPPGLLEIN 234
>sp|Q8YTB1|RIMM_NOSS1 Probable 16S rRNA-processing protein RimM OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=rimM PE=3 SV=1
Length = 246
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 16/202 (7%)
Query: 70 TSASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKL 129
T+ + +++ +G + S GL GE+ V P +DFPE RF PGTRWL + G+ + ++L
Sbjct: 58 TTPNPDEWLQIGKIVSAQGLSGEVRVYPDSDFPE-RFEVPGTRWLLRP--GQTEPQPIEL 114
Query: 130 IDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVM 189
+ GR + ++L G++ Q+ L G L DRPEL + E++ DL+GM V +
Sbjct: 115 LHGRYLENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFL 174
Query: 190 KETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249
+ +G+LVG VV+V +G NDLL V + V SD + V IPFV+ I
Sbjct: 175 QASGDLVGAVVDVIPAG-NDLLEVSLHEPVT------------SDKKPKTVLIPFVKAIA 221
Query: 250 PIVDMNGREMQITPPKGLLELN 271
P+VD+ R ++ITPP GLLEL
Sbjct: 222 PVVDLQTRRIEITPPPGLLELG 243
>sp|Q3ME71|RIMM_ANAVT Probable 16S rRNA-processing protein RimM OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rimM PE=3 SV=1
Length = 233
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ +G + S GL GE+ V P +DFPE RF PGTRWL + G+ + ++L+ GR
Sbjct: 51 EWLQIGKIVSAQGLSGEVRVYPDSDFPE-RFEVPGTRWLLRP--GQTEPQPIELLHGRYL 107
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ ++L G++ Q+ L G L DRPEL + E++ DL+GM V ++ +G+L
Sbjct: 108 ENKNLYVLQLAGVENRTQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFLQTSGDL 167
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VGTVV+V +G NDLL V + V SD + V IPFV+ I P+VD+
Sbjct: 168 VGTVVDVIPAG-NDLLEVSLHEPV------------PSDKKPKTVLIPFVKAIAPVVDLE 214
Query: 256 GREMQITPPKGLLELN 271
R ++ITPP GLLEL
Sbjct: 215 TRRIEITPPPGLLELG 230
>sp|Q7V4K0|RIMM_PROMM Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9313) GN=rimM PE=3 SV=2
Length = 176
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 6 DWLTVGKVVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 62 PGRSLYVVKFAGVNNRNAAEALVGQKLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 122 IGHVIDLTTAG-NDLLEIELL-------------------TGRRVLVPFVEAIVPEVQLN 161
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 162 QGWLRLTPPPGLLEL 176
>sp|A2CCX2|RIMM_PROM3 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9303) GN=rimM PE=3 SV=2
Length = 176
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + + G+QGE+ + PS+DFPE RFT PG RWL+++ R ++L+ GR+
Sbjct: 6 DWLTVGKLVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQL 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ F G++ A LVG LL DRP L +GEF+ DLVG+ ++ G
Sbjct: 62 PGRSLYVVKFAGVNNRNAAEALVGQNLLVPSSDRPSLAEGEFHLLDLVGLEARLQAEGPA 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V+++ +G NDLL + +GR V +PFVE IVP V +N
Sbjct: 122 IGHVIDLTTAG-NDLLEIELL-------------------AGRRVLVPFVEAIVPEVQLN 161
Query: 256 GREMQITPPKGLLEL 270
+++TPP GLLEL
Sbjct: 162 QGWLRLTPPPGLLEL 176
>sp|Q10VX5|RIMM_TRIEI Ribosome maturation factor RimM OS=Trichodesmium erythraeum (strain
IMS101) GN=rimM PE=3 SV=1
Length = 208
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 122/210 (58%), Gaps = 19/210 (9%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+G++ V PS+DFPE RFT PG RWL G+ ++L+ GR
Sbjct: 3 EWIEIGKIVAPQGLKGDLRVYPSSDFPE-RFTEPGKRWLLSP--GQVEPISIELLSGRYV 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ GI + +QA L S LL +GDRP+LE EFY DL+G+ V+ + G+
Sbjct: 60 PGKGLYVIELAGIKSRQQAEALRNSQLLIEKGDRPQLEADEFYVPDLIGLTVINQLNGKT 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSS-----VNVIEGSEEASSSAS----------DASGRLV 240
+G V+N+ +G NDLL V S+ V+E + + S S + +
Sbjct: 120 IGKVINIIFAG-NDLLEVEKISTDTPVISEVVENNLPSKSKRSRDTKNQKKNQSPPSKKI 178
Query: 241 WIPFVEEIVPIVDMNGREMQITPPKGLLEL 270
IPFV+EIVPIV+ ++ITPP GL++L
Sbjct: 179 LIPFVKEIVPIVNFEQSIIEITPPDGLIDL 208
>sp|A5GQ79|RIMM_SYNR3 Ribosome maturation factor RimM OS=Synechococcus sp. (strain
RCC307) GN=rimM PE=3 SV=1
Length = 175
Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats.
Identities = 75/194 (38%), Positives = 113/194 (58%), Gaps = 23/194 (11%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+F+ VG V + GL+GE+ + P++DFP+ RFT PG+RWLR++ + +V+L+ GR+
Sbjct: 4 EFLVVGQVVAAQGLKGEVRILPASDFPQ-RFTEPGSRWLRRRGHNEQ---QVQLLSGRQL 59
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++ +++ FEGI+ A LV L D PELEDGEF+ RDL G+ V + +
Sbjct: 60 PGKELFVVRFEGINDRTAAESLVHQEFLVAADDIPELEDGEFHVRDLQGLSVRLDTESDP 119
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++ + G NDLL + A GR +PFV+ IVP V++
Sbjct: 120 IGVVVDL-HHGGNDLLEIEL------------------KADGRRCLVPFVDAIVPQVELE 160
Query: 256 GREMQITPPKGLLE 269
+ ITPPKGLL+
Sbjct: 161 EGWLLITPPKGLLD 174
>sp|B0JU07|RIMM_MICAN Ribosome maturation factor RimM OS=Microcystis aeruginosa (strain
NIES-843) GN=rimM PE=3 SV=1
Length = 192
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 121/197 (61%), Gaps = 9/197 (4%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + GL+GE+ V +DFPE RF G R ++ G IRE+ L+ GRE
Sbjct: 4 NWLEIGTIVAPQGLEGELRVLSVSDFPE-RFQKRGMRGIQGPQGGE--IREITLLRGREL 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ EG++ EQA L G L A + ++P L+ E++ +LV + V TGE
Sbjct: 61 PGKNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G VV++F +G ND+L V +++ S + S +SD+ R + +PFV+EIVP+VD+
Sbjct: 121 IGVVVDIFWAG-NDILAVQLEANL----ASVKKKSPSSDSEARAL-VPFVKEIVPLVDLK 174
Query: 256 GREMQITPPKGLLELNL 272
++I PP GLLE+NL
Sbjct: 175 AARIEIAPPPGLLEINL 191
>sp|Q5N0Z1|RIMM_SYNP6 Ribosome maturation factor RimM OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=rimM PE=3 SV=1
Length = 182
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/192 (42%), Positives = 114/192 (59%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV-KLIDGREHPGQ 138
+G + + GL+GE+ V PS+DFPE RF PG RWLR+ R+T EV +L GR G+
Sbjct: 15 IGQIVAPQGLRGEMRVNPSSDFPE-RFLIPGPRWLRRP---RQTEPEVVELERGRAIAGK 70
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+I+ GI + EQA L G LL DRPEL++GEF+ DL+ + V+ + + +G
Sbjct: 71 NLYIVQLAGITSREQAEALRGCELLVPASDRPELDEGEFHVLDLIDLSVIDQASSTPLGI 130
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V ++G NDLL V+E ++ GR V+IPFVE IVP+VD+
Sbjct: 131 VRDVVSAG-NDLL---------VVELTD----------GREVYIPFVEAIVPVVDLAQGR 170
Query: 259 MQITPPKGLLEL 270
++ITPP GLLEL
Sbjct: 171 IEITPPPGLLEL 182
>sp|Q31KY0|RIMM_SYNE7 Ribosome maturation factor RimM OS=Synechococcus elongatus (strain
PCC 7942) GN=rimM PE=3 SV=1
Length = 182
Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/192 (42%), Positives = 114/192 (59%), Gaps = 25/192 (13%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREV-KLIDGREHPGQ 138
+G + + GL+GE+ V PS+DFPE RF PG RWLR+ R+T EV +L GR G+
Sbjct: 15 IGQIVAPQGLRGEMRVNPSSDFPE-RFLIPGPRWLRRP---RQTEPEVVELERGRAIAGK 70
Query: 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGT 198
+I+ GI + EQA L G LL DRPEL++GEF+ DL+ + V+ + + +G
Sbjct: 71 NLYIVQLAGITSREQAEALRGCELLVPASDRPELDEGEFHVLDLIDLSVIDQASSTPLGI 130
Query: 199 VVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258
V +V ++G NDLL V+E ++ GR V+IPFVE IVP+VD+
Sbjct: 131 VRDVVSAG-NDLL---------VVELTD----------GREVYIPFVEAIVPVVDLAQGR 170
Query: 259 MQITPPKGLLEL 270
++ITPP GLLEL
Sbjct: 171 IEITPPPGLLEL 182
>sp|Q7U9V4|RIMM_SYNPX Ribosome maturation factor RimM OS=Synechococcus sp. (strain
WH8102) GN=rimM PE=3 SV=1
Length = 177
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 23/180 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + GLQGE+ V P++DFPE RFTTPG+RWLR + G +EV+L GR+
Sbjct: 6 DWLIVGKLVGAQGLQGELRVNPASDFPE-RFTTPGSRWLRGRKGGEP--KEVQLKKGRQL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +IL EGID+ + A LVG LL DRPELE+GEF+ DLVG+ +
Sbjct: 63 PGKSLFILRLEGIDSRDAAEALVGQELLVPASDRPELEEGEFHLLDLVGLEARLHADEPA 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V ++ SG NDLL + ++GR + IPFVE IVP V +
Sbjct: 123 IGVVTDLI-SGGNDLLELKT-------------------SAGRTLLIPFVESIVPEVHLE 162
>sp|B0CFM3|RIMM_ACAM1 Ribosome maturation factor RimM OS=Acaryochloris marina (strain
MBIC 11017) GN=rimM PE=3 SV=1
Length = 192
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++++VG + HGL GE+ V P +DFPE RFT PG RWL T E++LI GR
Sbjct: 19 EWLEVGTIVGAHGLNGEVKVYPDSDFPE-RFTQPGLRWLVSPTEA-STPEEIQLIRGRFV 76
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
+ +++ ++ +Q+ L G+ LL R DRP L +GE+Y DL+G+ VV +T +
Sbjct: 77 ERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAV 136
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
VG+VV++ ++G NDLL + D + + + +PFV +VPIVD+
Sbjct: 137 VGSVVSLASAG-NDLLEIQL------------------DNTTKTILLPFVSALVPIVDIA 177
Query: 256 GREMQITPPKGLL 268
+ ++ITPPKGL+
Sbjct: 178 TKRIEITPPKGLI 190
>sp|Q3ANC6|RIMM_SYNSC Ribosome maturation factor RimM OS=Synechococcus sp. (strain
CC9605) GN=rimM PE=3 SV=1
Length = 177
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 102/179 (56%), Gaps = 23/179 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + +V GL GE+ V P++DFPE RFT PG RWLR + G + E++L GR+
Sbjct: 6 DWLSVGKIVAVQGLLGELRVNPASDFPE-RFTVPGPRWLRSRQGGEPS--EIQLKKGRQL 62
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ FEG+D A LVG LL DRPEL +GEF+ DLVG++ + G
Sbjct: 63 PGKSLFVVRFEGVDNRSAAETLVGMELLVPADDRPELAEGEFHLLDLVGLKARLTADGPA 122
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV ++ SG NDLL + + GR + IPFVE IVP V +
Sbjct: 123 IGTVSDLI-SGGNDLLEITT-------------------SDGRKLLIPFVEAIVPEVKL 161
>sp|Q0IDP0|RIMM_SYNS3 Ribosome maturation factor RimM OS=Synechococcus sp. (strain
CC9311) GN=rimM PE=3 SV=1
Length = 187
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 24/179 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG + GL+GE+ + P++DFPE RFT PGTRWL+ + +EV+L++GR+
Sbjct: 17 DWLPVGTLVGAQGLKGELRLNPASDFPE-RFTEPGTRWLQAK---GSAPKEVELLEGRQL 72
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ +G++ A LVG T+L DRPEL +GEF+ DLVG+ + + E
Sbjct: 73 PGKSLYVVRLKGVNNRASAEALVGCTVLVPAKDRPELAEGEFHLLDLVGLEARLAGSDEP 132
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+GTV N+ SG NDLL + SG+ V +PFVE IVP V +
Sbjct: 133 IGTVSNLI-SGGNDLLEIKLN-------------------SGKTVLVPFVEAIVPDVQL 171
>sp|Q3B0H7|RIMM_SYNS9 Ribosome maturation factor RimM OS=Synechococcus sp. (strain
CC9902) GN=rimM PE=3 SV=1
Length = 180
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + V GLQGE+ V P++DFPE RFT PG RW+R + RE++L GR+
Sbjct: 10 EWLTVGKIVGVQGLQGELRVNPASDFPE-RFTVPGPRWVRSK---GSPPREMQLKTGRQL 65
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ + +D + A LVGS + DRP+L +GEF+ DLVG+ + +
Sbjct: 66 PGKSLFVVRLDSVDNRDAAEALVGSDWMVPADDRPQLGEGEFHLLDLVGLEARLSPDSDP 125
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV ++ SG NDLL + +D S L IPFVE IVP V +
Sbjct: 126 IGTVTDLI-SGGNDLLEI-----------------KRTDGSKLL--IPFVEAIVPEVHLK 165
Query: 256 GREMQITPPKGLLEL 270
+ +TPP GL++L
Sbjct: 166 DGWLLLTPPPGLMDL 180
>sp|A9BD47|RIMM_PROM4 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9211) GN=rimM PE=3 SV=1
Length = 176
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 110/194 (56%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + GL+GE+ V PS+DFPE RF PG RWL++ E ++L GR+ P
Sbjct: 7 WLTIGKLVGAQGLRGEVKVNPSSDFPE-RFINPGERWLQKNT---EEPSRIELKSGRQLP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I++F GI +A +VG+ LL +P+L++GEF+ DL+G++ + G V
Sbjct: 63 GKSIYIVSFIGITDRNKAESIVGNKLLVPSDQKPKLKEGEFHLVDLLGLKAKFTQDGSDV 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+++ ++G NDLL + G+ V IPFV+EIVP++++
Sbjct: 123 GEVIDLTSAG-NDLLVIKL-------------------VEGKTVLIPFVKEIVPVINLKQ 162
Query: 257 REMQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 163 GWLLIKPPPGLLEL 176
>sp|B1XKY8|RIMM_SYNP2 Ribosome maturation factor RimM OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=rimM PE=3 SV=1
Length = 175
Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 24/195 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ +G V + GL+GE+ + PSTDFPE RF PG RWL+ L + + V+L GR+
Sbjct: 5 DWIIIGQVVAAQGLKGEVRINPSTDFPE-RFEVPGQRWLQ---LPNQDPQSVELERGRQI 60
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +++ FE I QA + G+ +L R GDRPELE E++ DL+G+ V T
Sbjct: 61 PGKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAK 120
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +++ + A D+L V +DA+ + +PFV+ IVP+VD+
Sbjct: 121 LGIVSDLY-TAAQDVLEV-------------------TDANQKKHLVPFVKAIVPVVDLV 160
Query: 256 GREMQITPPKGLLEL 270
+++ P GL E+
Sbjct: 161 ENRLEVDAPPGLFEI 175
>sp|Q8DK05|RIMM_THEEB Ribosome maturation factor RimM OS=Thermosynechococcus elongatus
(strain BP-1) GN=rimM PE=3 SV=1
Length = 183
Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 105/189 (55%), Gaps = 20/189 (10%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
+G + HGL+GE+ VKP +DFPE RFT PG RWLR + V L+ GR P +
Sbjct: 14 IGQIVGAHGLRGEVKVKPFSDFPE-RFTVPGCRWLRSP--RQPQPYAVTLLRGRFLPRAE 70
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++TF I A L G+ +L DRP L E++ DL+G+ V + GE VG V
Sbjct: 71 QFVVTFAEISDRTAAEALKGAEILVPASDRPPLAANEYHLMDLIGLAVYHQ--GERVGEV 128
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
V + N+G NDLL V +++ + +A S V+IPFV IVP+VD+ R +
Sbjct: 129 VGLVNAG-NDLLE------VQLLDPAPKAPQS--------VYIPFVPAIVPVVDLAARRI 173
Query: 260 QITPPKGLL 268
+I PP GLL
Sbjct: 174 EIDPPLGLL 182
>sp|Q7V9R4|RIMM_PROMA Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
SARG / CCMP1375 / SS120) GN=rimM PE=3 SV=1
Length = 176
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL G++ + PS+DFPE RF G RWL+ E ++++L GR+ P
Sbjct: 7 WLTIGKIVAPQGLSGKVRINPSSDFPE-RFIKSGDRWLQYD---NEEPQKIQLNSGRQIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +++ F+GID E+A+ LVG LL RP L GEF+ DL+G++V +K +
Sbjct: 63 GKSIYVVEFQGIDDREKAKALVGKKLLIDSSHRPTLAPGEFHLLDLLGLKVRLKNDHREI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V N+ ++G NDLL V SG+ V +PFV+EIVP + +
Sbjct: 123 GEVTNLTSAG-NDLLEVRLL-------------------SGKKVLVPFVKEIVPEIKLQE 162
Query: 257 REMQITPPKGLLEL 270
+ + PP GL +L
Sbjct: 163 GWLMVCPPPGLFDL 176
>sp|Q7UZQ3|RIMM_PROMP Ribosome maturation factor RimM OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rimM PE=3 SV=1
Length = 179
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S G+ G+I +K +DF E RFT PG RW+++ G ET E +L G +
Sbjct: 6 EWLIVGLITSPQGINGKIKIKSLSDFEE-RFTKPGKRWIQK---GNETPIEFELTHGFKK 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++S+I+TF+GI+ QA L G +L + P+L GE++ +L+ + V + E +L
Sbjct: 62 PGKESFIITFKGINNRTQAENLKGQKILVKVDAIPKLSHGEYHLTELINLNVKISENNQL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N L+ + +++ ++E V IPFV+EIVPIVD
Sbjct: 122 HIIGKVINLSNEKNNLLV-------IQLLKNNKE------------VLIPFVKEIVPIVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + +TPP GLLEL
Sbjct: 163 IKKNFILLTPPSGLLEL 179
>sp|B1WZK0|RIMM_CYAA5 Ribosome maturation factor RimM OS=Cyanothece sp. (strain ATCC
51142) GN=rimM PE=3 SV=1
Length = 191
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 13/194 (6%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++++G + S GL+GE+ V STDFPE RF PG RWL Q + ++LI G+
Sbjct: 8 WLEIGTIVSARGLKGELKVLSSTDFPE-RFEIPGKRWL--QPPHDPYPQAIELISGKSVA 64
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ +I+ EGI+ QA L G LL + + PELE+ E++ L+ ++V +TGEL+
Sbjct: 65 GKNIYIVRLEGIENRNQAETLRGYKLLIMDQELPELEEEEYHVSQLINVQVYHHKTGELL 124
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
GTV+++F +G +DLL + +I SE + + R V IPFV EIVP+VD+
Sbjct: 125 GTVIDLFTTG-HDLL------EIQLINNSEREAKKTKE---RKVLIPFVYEIVPVVDLEN 174
Query: 257 REMQITPPKGLLEL 270
++I PPKGLL L
Sbjct: 175 NRIEINPPKGLLSL 188
>sp|Q049R7|RIMM_LACDB Ribosome maturation factor RimM OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rimM PE=3 SV=1
Length = 167
Score = 113 bits (282), Expect = 6e-24, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDKNGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>sp|Q1G9L3|RIMM_LACDA Ribosome maturation factor RimM OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=rimM PE=3
SV=1
Length = 167
Score = 113 bits (282), Expect = 6e-24, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 112/193 (58%), Gaps = 27/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ +VG + + HGL+GE+ V +TDFPE RF G+R LG ++ REV + GR
Sbjct: 1 MNYYNVGKIIATHGLKGEVKVALTTDFPEDRFRA-GSRLY----LGDDS-REVTVAAGR- 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++TF I ++QA L G+ +L E D+ EL DG +Y R+L+G +V+ E+GE
Sbjct: 54 -PFKQFWLVTFAEITDIDQAEKLKGTEILISEEDQGELPDGVYYYRELLGCKVLDDESGE 112
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ GAND+ V +D +G+ W+P++ ++V VD+
Sbjct: 113 EIGELTDIEAPGANDIWEV-------------------TDKNGKSFWLPYIPQVVKSVDI 153
Query: 255 NGREMQITPPKGL 267
+ +E+++ +GL
Sbjct: 154 DKKEVRVELMEGL 166
>sp|Q7NKH3|RIMM_GLOVI Ribosome maturation factor RimM OS=Gloeobacter violaceus (strain
PCC 7421) GN=rimM PE=3 SV=1
Length = 181
Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 28/195 (14%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGR--ETIREVKLIDGRE 134
++++G V + GL+GE+ V+P+TDF E R T PG R ++GR + R +L GR
Sbjct: 4 WLEIGKVVAAQGLRGEVRVQPATDFAE-RLTRPGAR-----LVGRSLDDGRVFRLQSGRA 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
PG+ ++ FEG++ A LVGSTL +RP L GEF+ DL+G+RV ++TGE
Sbjct: 58 IPGKDLFVCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGE 117
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V ++ +G NDLL + + G+ V +PFV +VP+VD+
Sbjct: 118 AIGEVSDMTRAG-NDLLVIRL-------------------SGGKTVMVPFVHALVPVVDL 157
Query: 255 NGREMQITPPKGLLE 269
+++ GLL+
Sbjct: 158 EAGRIEVVAIPGLLD 172
>sp|A2BTI7|RIMM_PROMS Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
AS9601) GN=rimM PE=3 SV=1
Length = 179
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG++ S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G +
Sbjct: 6 EWLIVGFITSCHGINGQLKVKSLSDFEE-RFLKPGMRWLQKE---SEHPSKIELISGFKQ 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++ +I+ F+GI+T A L LL + P+L+ EF+ +L+ + V E EL
Sbjct: 62 PGKEIFIVKFKGINTRNHAEQLKKCKLLVKSDKLPKLKKEEFHLLELIDLEVKTLENDEL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N+LL + + + + V IPFV+EIVP+VD
Sbjct: 122 KIIGKVINLENE-KNNLLIIELFK------------------NQKKVLIPFVKEIVPLVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 IKNNFLIINPPNGLLEL 179
>sp|A2C552|RIMM_PROM1 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
NATL1A) GN=rimM PE=3 SV=1
Length = 176
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL+G++ +KPS+DFPE RFT PG RW+++ E E+KL G+ P
Sbjct: 7 WMSIGEIVAPQGLRGDLRIKPSSDFPE-RFTKPGKRWIQKT---DELPTEIKLTKGKLIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++L+ EG+ T A ++G L+ RP L E++ DL+G+ + L+
Sbjct: 63 GKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ G NDLL + G+ V +PFV+EIVP +++
Sbjct: 123 GYVTDLIK-GGNDLLEIEL-------------------VEGKKVLVPFVKEIVPEIEIKE 162
Query: 257 REMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 KWLLINPPPGLLEL 176
>sp|Q46IK7|RIMM_PROMT Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
NATL2A) GN=rimM PE=3 SV=1
Length = 176
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ +G + + GL+G++ +KPS+DFPE RFT PG RW+++ E E+KL G+ P
Sbjct: 7 WMTIGEIVAPQGLRGDLRIKPSSDFPE-RFTKPGKRWIQKT---DELPTEIKLTKGKLIP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
G+ ++L+ EG+ T A ++G L+ RP L E++ DL+G+ + L+
Sbjct: 63 GKSIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARRGPSKALI 122
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V ++ G NDLL + G+ V +PFV+EIVP +++
Sbjct: 123 GYVTDLIK-GGNDLLEIEL-------------------VEGKKVLVPFVKEIVPEIEIKE 162
Query: 257 REMQITPPKGLLEL 270
+ + I PP GLLEL
Sbjct: 163 KWLLINPPPGLLEL 176
>sp|A2BYY9|RIMM_PROM5 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9515) GN=rimM PE=3 SV=1
Length = 179
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S G+ G+I VK +DF E RFT PG RW++++ E+ ++++LI G +
Sbjct: 6 EWLIVGLITSPQGINGKIKVKSLSDFEE-RFTKPGIRWIQKET---ESPKKLQLISGFQK 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++S+++TF+ I +A L G LL + + P+L EF+ +L+ ++V + E +L
Sbjct: 62 PGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNKL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G VVN+ N N+LL + + + + V +PFV+EI+P +D
Sbjct: 122 KIIGKVVNLENE-KNNLLVIKLLT------------------NDKEVLVPFVKEIIPEID 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + + ITPP GLLEL
Sbjct: 163 IKNKFLIITPPPGLLEL 179
>sp|A3PF96|RIMM_PROM0 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9301) GN=rimM PE=3 SV=1
Length = 179
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++ VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G +
Sbjct: 6 EWLTVGLITSCHGINGQVKVKSLSDFEE-RFLKPGMRWLQKE---NEPPSKIELISGFKQ 61
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG++++I+ +GI+T A L +L R P+L+ EF+ +L+ + V E EL
Sbjct: 62 PGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDEL 121
Query: 196 --VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVD 253
+G V+N+ N N+LL + + + + V IPFV+EIVP+VD
Sbjct: 122 KTIGKVINLENE-KNNLLIIELFK------------------NQKKVLIPFVKEIVPLVD 162
Query: 254 MNGREMQITPPKGLLEL 270
+ + + I PP GLLEL
Sbjct: 163 IKNQFVIINPPNGLLEL 179
>sp|Q318D6|RIMM_PROM9 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9312) GN=rimM PE=3 SV=1
Length = 179
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 25/193 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++L G + PG++
Sbjct: 10 VGLITSCHGINGQLKVKSLSDFEE-RFLKPGIRWLQKE---NEPPSKIELTSGFKQPGKE 65
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL--VG 197
++I+ +GI+ QA L +L + P+L+ EF+ +L+ + V E EL +G
Sbjct: 66 TFIIKLQGINNRNQAERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEELKIIG 125
Query: 198 TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGR 257
V+N+ N N+LL V + + + V IPFV+EIVP+VD+
Sbjct: 126 KVINLENE-KNNLLVVELFK------------------NKKKVLIPFVKEIVPLVDIKNN 166
Query: 258 EMQITPPKGLLEL 270
+ I PP GLL+L
Sbjct: 167 FLIINPPNGLLDL 179
>sp|A8G7B1|RIMM_PROM2 Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain
MIT 9215) GN=rimM PE=3 SV=1
Length = 179
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 109/196 (55%), Gaps = 25/196 (12%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
++ VG + S HG+ G++ VK +DF E RF PG RWL+++ E +++LI G + P
Sbjct: 7 WLTVGLITSCHGINGQVKVKSLSDFEE-RFLKPGMRWLQKE---DEPPSKIELISGFKQP 62
Query: 137 GQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL- 195
G++++++ + I++ A L +L + + P+L+ EF+ +L+ ++V E +L
Sbjct: 63 GKQTFVIKLKDINSRNHAEQLKKFKILVKTNEIPKLKKEEFHLLELINLKVNTLENDKLN 122
Query: 196 -VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G V+N+ N N+LL + + + + V+IPFV+EIVPIVD+
Sbjct: 123 TIGKVINLENE-KNNLLVIKLFKN------------------QKEVFIPFVKEIVPIVDI 163
Query: 255 NGREMQITPPKGLLEL 270
+ I PP GLLEL
Sbjct: 164 KNNFIIINPPNGLLEL 179
>sp|P74035|RIMM_SYNY3 Ribosome maturation factor RimM OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rimM PE=3 SV=1
Length = 185
Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
+++++G + + G+QGE+ V ++DFP RF T G RW+R+ +ET + + L G++
Sbjct: 13 NWLEIGTIVAAQGIQGEVRVLSASDFPA-RFLTKGQRWIRKT--PQETPQPLTLKKGKQI 69
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
PG+ +IL F I QA LV LL DR LE GEF+ DL+G+ V + G+
Sbjct: 70 PGKNLYILRFTEITDRNQAEALVNYQLLVPATDRLPLEPGEFHVTDLLGLIVYDHDNGDR 129
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +++G NDLL + + + V +PFVE IVP V++
Sbjct: 130 LGIVTDFYSAG-NDLLGI-----------------TLDKNPDKEVLVPFVEAIVPTVELA 171
Query: 256 GREMQITPPKGLLE 269
+ ++I GLL+
Sbjct: 172 EQRLEIKTIPGLLD 185
>sp|Q2JPG6|RIMM_SYNJB Ribosome maturation factor RimM OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rimM PE=3 SV=1
Length = 179
Score = 99.8 bits (247), Expect = 7e-20, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
D++ VG V + HGL+G + V+ +DFPE RFT PG RWL++ + LI+G+
Sbjct: 7 DWLLVGQVVAAHGLRGWLRVRCWSDFPE-RFTEPGPRWLQRDTDPEPLLH--PLIEGQFF 63
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
P + +++ EGI A VG+ LL R L+ E++ RDL+G+ V + GEL
Sbjct: 64 PAKGLYLVRLEGIPNRTVAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQ--GEL 121
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V + +G D+L + + + R V IPFV+ +VP+VD+
Sbjct: 122 LGQVSGILAAG-QDVLEI-------------------TTSDHRQVLIPFVKALVPVVDLE 161
Query: 256 GREMQITPPKGLLE 269
+ + PP GL+E
Sbjct: 162 KGALHVQPPPGLVE 175
>sp|Q044E4|RIMM_LACGA Ribosome maturation factor RimM OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=rimM PE=3 SV=1
Length = 173
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDG-RE 134
++ +VG + S HGL+GE+ V +TDFPE R +++ +E I +DG R
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELI-----VDGARR 57
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
H ++ +++ FE ID ++QA + G L E D+ EL +G +Y +D++ V ETGE
Sbjct: 58 H--KQFYLVKFEEIDGIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGE 115
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 116 KLGVLANIETPGANDIWEI-------------------KPEHGKSFWIPNIESVVNKVDL 156
Query: 255 NGREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 157 ANKRIEVTLLEGLRDEN 173
>sp|A8YVT3|RIMM_LACH4 Ribosome maturation factor RimM OS=Lactobacillus helveticus (strain
DPC 4571) GN=rimM PE=3 SV=1
Length = 171
Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+++ DV + + HGL GE+ V TDFPE RF LR +T R + + R
Sbjct: 1 MEYFDVARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRS-----DTNRTLTVEKSR- 54
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W++ F+ I ++QA L G L+ E DR EL DG +Y +D+ V+ +ETG+
Sbjct: 55 -PFKQFWLIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G +V++ + GAND+ V + G+ WIP + ++V VD+
Sbjct: 114 RIGKIVDIQSPGANDIWLV-------------------REDDGKEYWIPNIADVVKKVDV 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 AAKKVYVELMEGL 167
>sp|Q74IQ5|RIMM_LACJO Ribosome maturation factor RimM OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=rimM PE=3 SV=1
Length = 173
Score = 95.1 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREH 135
++ +VG + S HGL+GE+ V +TDFPE R T +++ E I E + R H
Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNKQYEELIVE----NTRRH 58
Query: 136 PGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
++ +++ FE ID ++QA + L E D+ EL +G +Y +D++ V ETGE
Sbjct: 59 --KQFYLVKFEKIDDIDQAEKICSKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEK 116
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G + N+ GAND+ + G+ WIP +E +V VD+
Sbjct: 117 LGVLENIETPGANDIWEI-------------------KPEKGKSFWIPNIESVVKKVDLA 157
Query: 256 GREMQITPPKGLLELN 271
+ +++T +GL + N
Sbjct: 158 NKRIEVTLLEGLRDEN 173
>sp|Q2JUD0|RIMM_SYNJA Ribosome maturation factor RimM OS=Synechococcus sp. (strain
JA-3-3Ab) GN=rimM PE=3 SV=1
Length = 186
Score = 95.1 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 80 VGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQK 139
VG V + HGL+G + VK +DFPE R T PG RWL++ + LI+G+ P +
Sbjct: 12 VGQVVAAHGLRGWLRVKCWSDFPE-RLTEPGPRWLQRDSDPEPLLH--PLIEGQFFPAKG 68
Query: 140 SWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTV 199
+++ EGI A VG+ +L R LE E++ DL+G+ V + G L+G V
Sbjct: 69 LYLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYHQ--GRLLGHV 126
Query: 200 VNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREM 259
++ +G D+L + + R V IPFV+ +VP+VD+ E+
Sbjct: 127 SAIWAAG-QDVLEI-------------------ATPDKRQVLIPFVKALVPVVDLEKGEL 166
Query: 260 QITPPKGLLELNLRTD 275
Q+ PP GL+E L D
Sbjct: 167 QVQPPPGLVESFLGQD 182
>sp|Q5FJK6|RIMM_LACAC Ribosome maturation factor RimM OS=Lactobacillus acidophilus
(strain ATCC 700396 / NCK56 / N2 / NCFM) GN=rimM PE=3
SV=1
Length = 171
Score = 92.4 bits (228), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGRE 134
+ + DV + + HGL GE+ V TDFPE RF L+ + TI+ +
Sbjct: 1 MQYFDVARILTTHGLHGEVKVNVITDFPEDRFAEGMQLELKDDIDRVLTIK-------KS 53
Query: 135 HPGQKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGE 194
P ++ W+L F+ I +++A L G L+ E DR EL DG +Y +D+ V+ ETG+
Sbjct: 54 RPFKQFWLLQFDEITDIDEAEKLRGKILVISEKDRGELPDGVYYYKDIFDCGVIDNETGK 113
Query: 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDM 254
+G + ++ + GAND+ V + +G+ WIP + ++V +D+
Sbjct: 114 RLGKITDIQSPGANDIWLV-------------------HEDNGKEYWIPNIADVVKKIDI 154
Query: 255 NGREMQITPPKGL 267
+++ + +GL
Sbjct: 155 ADKKVYVELMEGL 167
>sp|Q49X25|RIMM_STAS1 Ribosome maturation factor RimM OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=rimM PE=3 SV=1
Length = 168
Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 30/194 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V++G + + HG++GEI VK ++DF E RF PG + ++ +E + E + R H G
Sbjct: 3 VEIGKIVNTHGIKGEIKVKSNSDFTETRF-QPGELVIIERK-NKEPL-EFTIASYRMHKG 59
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDG--EFYTRDLVGMRVVMKETGEL 195
+LTFEGI+ + L G T++ +E D E+E G EFY D++G V +
Sbjct: 60 LH--MLTFEGINNINDIEYLKGETIM-QERDHEEIELGEHEFYYSDIIGC-TVFDDDDTP 115
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+G V +F +GAND V V++G +E IP++ ++V +D+
Sbjct: 116 IGRVTEIFETGAND---------VWVVKGDKE------------YLIPYIADVVKDIDVE 154
Query: 256 GREMQITPPKGLLE 269
GR +QITP +GLL+
Sbjct: 155 GRRIQITPMEGLLD 168
>sp|C5D8U4|RIMM_GEOSW Ribosome maturation factor RimM OS=Geobacillus sp. (strain WCH70)
GN=rimM PE=3 SV=1
Length = 172
Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHP 136
+ +VG + + HG++GE+ V TDFPE R+ T ++ E +E + + H
Sbjct: 4 WFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNTLYIFM-----EKSKEPVAVTVKSHR 58
Query: 137 GQKSW-ILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGEL 195
KS+ +L FEG D + G+ L E EL++GE+Y +++G VV +E GE
Sbjct: 59 VHKSFDLLAFEGYDNINLVEKFKGAMLKVPESQLGELDEGEYYFHEIIGCTVVTEE-GET 117
Query: 196 VGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255
+GTV + GAND+ V +G+ V IP++E++V VD+
Sbjct: 118 IGTVKEILTPGANDVWVV-------------------KRDNGKEVLIPYIEDVVKNVDVE 158
Query: 256 GREMQITPPKGLLE 269
+ + I P +GLLE
Sbjct: 159 TKTITIRPMEGLLE 172
>sp|Q2FZ44|RIMM_STAA8 Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
NCTC 8325) GN=rimM PE=3 SV=1
Length = 167
Score = 89.4 bits (220), Expect = 9e-17, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-AVFDDQKTPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|P66657|RIMM_STAAW Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
MW2) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|Q6G9X4|RIMM_STAAS Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
MSSA476) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|P66656|RIMM_STAAN Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
N315) GN=rimM PE=1 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|P66655|RIMM_STAAM Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|A6QGD9|RIMM_STAAE Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
Newman) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|Q5HGJ3|RIMM_STAAC Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
COL) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
>sp|A5ISC4|RIMM_STAA9 Ribosome maturation factor RimM OS=Staphylococcus aureus (strain
JH9) GN=rimM PE=3 SV=1
Length = 167
Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPG 137
V+VG + + HG++GEI VK ++DF ++RF PG V+ E + R H G
Sbjct: 3 VEVGQIVNTHGIKGEIKVKSNSDFTDVRF-QPGQVL---TVVHNNNDLEYTVKSHRVHKG 58
Query: 138 QKSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELV 196
+LTFEGI+ + L GS++ R+ + LE+ EFY D++G V + +
Sbjct: 59 LH--MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGC-TVFDDQETPI 115
Query: 197 GTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256
G V+N+F +GAND V VI+GS+E IP++ ++V VD+
Sbjct: 116 GRVINIFETGAND---------VWVIKGSKE------------YLIPYIADVVKEVDVEN 154
Query: 257 REMQITPPKGLLE 269
+++ ITP +GLL+
Sbjct: 155 KKIIITPMEGLLD 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,209,634
Number of Sequences: 539616
Number of extensions: 10400189
Number of successful extensions: 33793
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 32463
Number of HSP's gapped (non-prelim): 723
length of query: 668
length of database: 191,569,459
effective HSP length: 124
effective length of query: 544
effective length of database: 124,657,075
effective search space: 67813448800
effective search space used: 67813448800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)