Query 005946
Match_columns 668
No_of_seqs 310 out of 1722
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 3.6E-81 7.8E-86 689.8 30.6 330 296-667 21-411 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 1.3E-74 2.8E-79 639.3 26.8 339 301-667 2-402 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 8.1E-72 1.8E-76 600.8 18.0 335 298-667 4-393 (477)
4 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.4E-65 3.1E-70 546.1 22.9 258 393-667 2-311 (323)
5 PLN02830 UDP-sugar pyrophospho 100.0 8.8E-59 1.9E-63 524.8 26.8 278 293-600 23-324 (615)
6 cd00897 UGPase_euk Eukaryotic 100.0 8.3E-58 1.8E-62 479.8 22.5 231 405-667 2-277 (300)
7 cd06424 UGGPase UGGPase cataly 100.0 1.2E-57 2.6E-62 480.2 17.7 238 407-667 1-303 (315)
8 COG4284 UDP-glucose pyrophosph 100.0 1.6E-53 3.4E-58 460.5 21.0 331 297-667 15-395 (472)
9 PF01704 UDPGP: UTP--glucose-1 100.0 1.3E-53 2.9E-58 467.1 18.5 242 396-667 46-335 (420)
10 PLN02474 UTP--glucose-1-phosph 100.0 4.8E-51 1E-55 448.4 23.4 232 399-667 74-352 (469)
11 cd04180 UGPase_euk_like Eukary 100.0 1.3E-42 2.8E-47 361.5 17.9 243 407-667 1-256 (266)
12 PRK00122 rimM 16S rRNA-process 100.0 1.3E-41 2.8E-46 332.7 20.3 172 71-269 1-172 (172)
13 COG0806 RimM RimM protein, req 100.0 1.9E-41 4.2E-46 329.6 18.5 174 71-269 1-174 (174)
14 PRK14590 rimM 16S rRNA-process 100.0 1.3E-40 2.9E-45 324.9 18.4 169 78-270 1-171 (171)
15 PRK14591 rimM 16S rRNA-process 100.0 3.2E-40 6.9E-45 321.9 19.6 167 75-267 3-169 (169)
16 PRK14592 rimM 16S rRNA-process 100.0 6.8E-40 1.5E-44 318.4 18.3 163 76-267 1-163 (165)
17 PRK14593 rimM 16S rRNA-process 100.0 1.2E-39 2.7E-44 321.8 17.9 176 75-270 2-183 (184)
18 TIGR02273 16S_RimM 16S rRNA pr 100.0 3.9E-39 8.5E-44 313.1 19.7 165 77-266 1-165 (165)
19 PRK14594 rimM 16S rRNA-process 100.0 5.4E-39 1.2E-43 312.4 19.0 163 77-265 1-163 (166)
20 PRK13829 rimM 16S rRNA-process 100.0 2E-37 4.3E-42 300.3 17.7 161 76-269 2-162 (162)
21 PRK13828 rimM 16S rRNA-process 100.0 7.2E-37 1.6E-41 296.1 18.2 156 89-272 1-156 (161)
22 KOG2638 UDP-glucose pyrophosph 100.0 1.3E-29 2.8E-34 267.8 23.9 325 279-666 11-377 (498)
23 PF01782 RimM: RimM N-terminal 99.7 8.8E-18 1.9E-22 145.5 10.8 84 79-168 1-84 (84)
24 PF05239 PRC: PRC-barrel domai 98.6 2.9E-07 6.3E-12 78.2 9.3 78 174-268 1-79 (79)
25 cd00226 PRCH Photosynthetic re 96.7 0.004 8.6E-08 64.2 6.9 67 180-270 146-216 (246)
26 KOG2388 UDP-N-acetylglucosamin 95.8 0.00013 2.7E-09 81.1 -9.9 140 139-296 70-209 (477)
27 TIGR02092 glgD glucose-1-phosp 95.0 0.18 3.9E-06 55.1 11.2 139 405-581 1-146 (369)
28 cd02508 ADP_Glucose_PP ADP-glu 94.3 0.74 1.6E-05 45.7 12.9 155 409-607 1-163 (200)
29 PF01128 IspD: 2-C-methyl-D-er 94.3 0.12 2.6E-06 53.2 7.1 64 407-479 1-65 (221)
30 COG1213 Predicted sugar nucleo 93.9 0.12 2.7E-06 53.2 6.3 66 407-482 4-70 (239)
31 cd04197 eIF-2B_epsilon_N The N 93.8 0.73 1.6E-05 46.5 11.8 130 409-583 3-143 (217)
32 TIGR02623 G1P_cyt_trans glucos 93.8 1 2.2E-05 46.8 13.1 146 409-584 2-153 (254)
33 cd02503 MobA MobA catalyzes th 93.7 1.3 2.9E-05 42.8 13.1 135 408-608 2-141 (181)
34 cd04189 G1P_TT_long G1P_TT_lon 93.3 0.28 6E-06 49.7 7.8 66 408-485 2-72 (236)
35 PRK13385 2-C-methyl-D-erythrit 93.3 0.28 6E-06 50.0 7.8 64 407-479 3-67 (230)
36 PRK05293 glgC glucose-1-phosph 93.0 1.5 3.2E-05 48.1 13.4 71 405-486 2-77 (380)
37 PRK00844 glgC glucose-1-phosph 92.8 1.7 3.7E-05 48.3 13.8 141 405-582 4-150 (407)
38 PLN02241 glucose-1-phosphate a 92.7 1.1 2.5E-05 50.3 12.3 147 406-581 3-154 (436)
39 cd02509 GDP-M1P_Guanylyltransf 92.6 0.25 5.4E-06 52.1 6.5 64 408-479 2-70 (274)
40 cd06422 NTP_transferase_like_1 92.4 0.4 8.8E-06 48.1 7.5 64 409-485 2-70 (221)
41 COG0836 {ManC} Mannose-1-phosp 92.4 0.27 5.9E-06 52.9 6.4 85 407-502 2-94 (333)
42 PRK14359 glmU bifunctional N-a 92.3 2.3 5.1E-05 47.2 14.1 61 406-479 2-64 (430)
43 PF12804 NTP_transf_3: MobA-li 92.2 1.6 3.5E-05 41.3 11.0 139 409-608 1-143 (160)
44 cd04198 eIF-2B_gamma_N The N-t 92.1 1.6 3.6E-05 43.9 11.5 129 409-585 3-137 (214)
45 PRK15480 glucose-1-phosphate t 91.8 0.57 1.2E-05 50.1 8.2 76 406-495 3-83 (292)
46 cd02540 GT2_GlmU_N_bac N-termi 91.8 2.4 5.1E-05 42.6 12.2 60 409-479 1-61 (229)
47 PF00483 NTP_transferase: Nucl 91.7 0.25 5.5E-06 50.2 5.1 126 409-579 2-133 (248)
48 cd02538 G1P_TT_short G1P_TT_sh 91.7 0.63 1.4E-05 47.5 8.0 67 408-485 2-73 (240)
49 PRK02862 glgC glucose-1-phosph 91.7 2 4.4E-05 48.2 12.7 139 406-582 3-149 (429)
50 PLN02728 2-C-methyl-D-erythrit 91.6 0.47 1E-05 49.7 7.0 65 405-478 23-88 (252)
51 cd04181 NTP_transferase NTP_tr 91.4 2.5 5.4E-05 41.8 11.8 126 409-585 1-132 (217)
52 cd02524 G1P_cytidylyltransfera 91.1 2.5 5.3E-05 43.7 11.7 142 409-584 1-153 (253)
53 TIGR01207 rmlA glucose-1-phosp 91.0 0.73 1.6E-05 49.1 7.9 73 409-495 2-79 (286)
54 TIGR00454 conserved hypothetic 90.8 0.49 1.1E-05 47.0 6.0 60 408-479 2-62 (183)
55 COG1208 GCD1 Nucleoside-diphos 90.8 0.71 1.5E-05 50.8 7.8 76 407-497 2-82 (358)
56 PRK14356 glmU bifunctional N-a 89.9 4 8.6E-05 45.8 13.1 61 406-477 5-66 (456)
57 cd06915 NTP_transferase_WcbM_l 89.9 0.91 2E-05 45.0 7.1 60 409-480 1-65 (223)
58 TIGR01208 rmlA_long glucose-1- 89.4 1.2 2.7E-05 48.3 8.2 67 409-485 2-72 (353)
59 TIGR01105 galF UTP-glucose-1-p 89.4 1.1 2.3E-05 48.2 7.5 62 406-479 3-69 (297)
60 cd06426 NTP_transferase_like_2 89.3 1 2.2E-05 45.0 7.0 65 409-484 1-69 (220)
61 cd06425 M1P_guanylylT_B_like_N 89.2 5.8 0.00013 40.2 12.6 59 409-479 3-66 (233)
62 PRK05450 3-deoxy-manno-octulos 88.8 6.8 0.00015 39.9 12.8 59 406-479 2-60 (245)
63 COG1209 RfbA dTDP-glucose pyro 88.1 1.2 2.7E-05 47.0 6.7 157 409-593 3-166 (286)
64 PRK15460 cpsB mannose-1-phosph 87.7 1.2 2.7E-05 50.9 7.0 85 406-502 5-96 (478)
65 cd02517 CMP-KDO-Synthetase CMP 87.7 12 0.00027 37.8 13.8 60 406-479 1-60 (239)
66 COG1873 Protein implicated in 87.3 1.8 4E-05 38.1 6.3 71 176-263 5-78 (87)
67 cd04182 GT_2_like_f GT_2_like_ 87.2 1.1 2.4E-05 43.1 5.5 50 407-468 1-51 (186)
68 PRK00725 glgC glucose-1-phosph 86.3 8.1 0.00018 43.4 12.5 138 406-583 15-163 (425)
69 TIGR01479 GMP_PMI mannose-1-ph 86.2 1.9 4.2E-05 49.1 7.6 62 409-479 3-69 (468)
70 COG0746 MobA Molybdopterin-gua 86.1 11 0.00023 38.0 12.0 141 406-608 4-145 (192)
71 PRK14489 putative bifunctional 86.1 9.1 0.0002 42.2 12.5 142 406-608 5-151 (366)
72 cd02513 CMP-NeuAc_Synthase CMP 85.8 21 0.00046 35.5 14.1 133 406-587 1-138 (223)
73 PRK10122 GalU regulator GalF; 85.5 2.8 6.2E-05 44.8 8.0 61 406-478 3-68 (297)
74 COG2266 GTP:adenosylcobinamide 84.9 2.2 4.7E-05 42.4 6.1 61 408-480 2-62 (177)
75 cd06428 M1P_guanylylT_A_like_N 84.4 15 0.00032 37.9 12.5 60 410-480 2-68 (257)
76 KOG1322 GDP-mannose pyrophosph 84.3 11 0.00024 41.1 11.5 137 406-587 9-150 (371)
77 cd02516 CDP-ME_synthetase CDP- 84.2 2 4.4E-05 42.8 5.9 56 407-471 1-57 (218)
78 PRK00155 ispD 2-C-methyl-D-ery 84.1 2.4 5.2E-05 42.9 6.4 55 406-469 3-58 (227)
79 TIGR00453 ispD 2-C-methyl-D-er 83.5 2.1 4.5E-05 42.9 5.6 61 408-477 1-62 (217)
80 cd02523 PC_cytidylyltransferas 83.5 7.8 0.00017 39.0 9.8 59 409-479 1-64 (229)
81 TIGR03310 matur_ygfJ molybdenu 83.2 2.6 5.7E-05 40.8 6.0 142 409-608 2-147 (188)
82 PRK13368 3-deoxy-manno-octulos 82.4 25 0.00055 35.5 13.2 59 406-479 2-61 (238)
83 PRK14355 glmU bifunctional N-a 82.3 18 0.00039 40.8 13.1 63 406-479 3-66 (459)
84 COG1211 IspD 4-diphosphocytidy 82.0 2.8 6E-05 43.5 5.9 65 405-478 3-68 (230)
85 PRK00560 molybdopterin-guanine 81.7 1.7 3.7E-05 43.4 4.1 52 404-466 6-57 (196)
86 TIGR01150 puhA photosynthetic 80.4 4.9 0.00011 41.7 6.9 59 181-264 150-212 (252)
87 PRK14360 glmU bifunctional N-a 80.1 4.3 9.3E-05 45.4 7.1 62 407-479 2-64 (450)
88 PRK09382 ispDF bifunctional 2- 79.9 3.2 6.9E-05 46.1 5.9 57 406-471 5-62 (378)
89 COG2451 Ribosomal protein L35A 78.8 3.3 7.1E-05 36.9 4.3 27 139-165 26-52 (100)
90 PRK14352 glmU bifunctional N-a 78.5 3.7 7.9E-05 46.8 6.0 63 406-479 4-67 (482)
91 TIGR03202 pucB xanthine dehydr 77.0 4.2 9.1E-05 39.9 5.2 68 529-608 82-153 (190)
92 PRK14353 glmU bifunctional N-a 76.8 4.4 9.6E-05 45.3 6.0 63 406-479 5-68 (446)
93 PRK00317 mobA molybdopterin-gu 76.3 3.1 6.7E-05 41.0 4.1 51 405-467 2-53 (193)
94 TIGR01173 glmU UDP-N-acetylglu 76.1 4.1 8.8E-05 45.5 5.4 61 408-479 2-63 (451)
95 PRK04337 50S ribosomal protein 75.8 2.9 6.3E-05 36.9 3.2 29 138-166 19-48 (87)
96 PRK14358 glmU bifunctional N-a 75.7 4.8 0.0001 46.0 6.0 61 406-478 7-69 (481)
97 TIGR02665 molyb_mobA molybdopt 75.4 3 6.5E-05 40.6 3.6 56 548-608 87-146 (186)
98 TIGR01099 galU UTP-glucose-1-p 75.3 5.6 0.00012 41.0 5.8 60 408-479 2-66 (260)
99 cd02541 UGPase_prokaryotic Pro 74.4 5.7 0.00012 41.1 5.6 59 409-479 3-66 (267)
100 COG1093 SUI2 Translation initi 72.8 11 0.00025 39.6 7.2 90 195-305 15-115 (269)
101 PTZ00041 60S ribosomal protein 72.0 8.8 0.00019 35.8 5.5 30 138-167 38-68 (120)
102 PF01247 Ribosomal_L35Ae: Ribo 67.7 5.4 0.00012 35.8 3.1 60 138-215 19-79 (95)
103 TIGR02888 spore_YlmC_YmxH spor 66.9 15 0.00032 31.7 5.5 25 179-203 2-28 (76)
104 PRK14490 putative bifunctional 66.2 5.8 0.00013 43.8 3.7 34 405-442 173-207 (369)
105 PRK13389 UTP--glucose-1-phosph 64.0 13 0.00028 40.0 5.8 61 407-479 9-74 (302)
106 PRK02726 molybdopterin-guanine 62.8 8.1 0.00018 38.6 3.8 48 406-466 7-55 (200)
107 TIGR00466 kdsB 3-deoxy-D-manno 62.2 20 0.00043 37.0 6.6 30 409-442 2-31 (238)
108 COG0448 GlgC ADP-glucose pyrop 61.3 51 0.0011 36.9 9.7 144 405-584 4-154 (393)
109 KOG0887 60S ribosomal protein 60.3 11 0.00024 34.3 3.7 51 139-205 30-81 (111)
110 PRK09451 glmU bifunctional N-a 60.1 16 0.00035 41.1 6.0 62 406-478 5-67 (456)
111 PRK14500 putative bifunctional 60.0 11 0.00023 41.6 4.3 34 405-442 159-193 (346)
112 cd02507 eIF-2B_gamma_N_like Th 58.6 23 0.0005 35.7 6.2 61 409-480 3-67 (216)
113 COG1210 GalU UDP-glucose pyrop 58.3 13 0.00029 39.5 4.5 49 409-468 7-60 (291)
114 PF13106 DUF3961: Domain of un 57.2 5.7 0.00012 30.0 1.1 15 480-494 4-21 (40)
115 TIGR02091 glgC glucose-1-phosp 56.9 9 0.0002 41.6 3.1 59 410-479 2-65 (361)
116 PRK14357 glmU bifunctional N-a 56.7 20 0.00044 40.1 6.0 58 408-478 2-61 (448)
117 PRK14354 glmU bifunctional N-a 56.7 21 0.00045 40.1 6.1 61 407-478 3-64 (458)
118 cd04183 GT2_BcE_like GT2_BcbE_ 52.9 11 0.00024 37.9 2.8 31 409-442 1-36 (231)
119 PTZ00041 60S ribosomal protein 51.1 17 0.00036 34.0 3.4 30 77-106 78-107 (120)
120 PRK04337 50S ribosomal protein 49.4 19 0.00041 31.9 3.2 28 77-104 51-78 (87)
121 COG3881 PRC-barrel domain cont 48.8 12 0.00027 36.5 2.2 67 180-265 5-72 (176)
122 COG4750 LicC CTP:phosphocholin 47.3 20 0.00043 36.5 3.4 28 409-442 3-30 (231)
123 COG1588 POP4 RNase P/RNase MRP 44.9 81 0.0018 28.4 6.5 81 175-283 8-93 (95)
124 PF09939 DUF2171: Uncharacteri 40.7 1.3E+02 0.0028 25.4 6.8 56 184-263 5-60 (67)
125 PF14134 DUF4301: Domain of un 40.1 25 0.00054 40.4 3.3 88 459-562 201-296 (513)
126 COG3277 GAR1 RNA-binding prote 39.9 87 0.0019 28.4 6.0 32 183-215 27-58 (98)
127 COG3881 PRC-barrel domain cont 39.5 32 0.0007 33.7 3.4 67 141-213 51-120 (176)
128 PRK13149 H/ACA RNA-protein com 39.4 57 0.0012 27.8 4.6 33 183-216 26-58 (73)
129 KOG1460 GDP-mannose pyrophosph 39.2 5E+02 0.011 28.5 12.4 128 523-667 86-244 (407)
130 cd02518 GT2_SpsF SpsF is a gly 37.5 1.2E+02 0.0025 30.7 7.5 142 409-608 2-148 (233)
131 PF01247 Ribosomal_L35Ae: Ribo 35.7 35 0.00076 30.8 2.9 30 75-104 57-86 (95)
132 PF14969 DUF4508: Domain of un 30.7 43 0.00092 30.3 2.6 37 309-345 59-96 (98)
133 COG1207 GlmU N-acetylglucosami 30.4 1.3E+02 0.0029 34.1 6.8 131 406-587 2-136 (460)
134 COG2451 Ribosomal protein L35A 28.7 67 0.0015 28.9 3.4 29 76-104 57-85 (100)
135 PLN02917 CMP-KDO synthetase 28.6 1.7E+02 0.0036 31.4 7.2 60 406-479 47-106 (293)
136 TIGR00752 slp outer membrane l 28.3 1.3E+02 0.0028 30.3 5.8 67 182-261 46-112 (182)
137 KOG2193 IGF-II mRNA-binding pr 26.5 53 0.0011 36.9 2.9 77 93-171 456-535 (584)
138 PF03641 Lysine_decarbox: Poss 26.5 1.1E+02 0.0023 28.8 4.7 50 407-478 55-104 (133)
139 PRK10834 vancomycin high tempe 24.9 34 0.00074 35.8 1.1 81 396-485 71-162 (239)
140 COG2938 Uncharacterized conser 24.4 2.3E+02 0.0049 25.6 6.0 57 279-343 12-68 (94)
141 COG2068 Uncharacterized MobA-r 21.2 2.7E+02 0.0058 28.5 6.5 58 403-471 2-59 (199)
142 COG4014 Uncharacterized protei 20.4 1.4E+02 0.0031 26.6 3.8 35 179-214 7-41 (97)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=3.6e-81 Score=689.76 Aligned_cols=330 Identities=18% Similarity=0.310 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCC
Q 005946 296 RLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISG 375 (668)
Q Consensus 296 ~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 375 (668)
.+++++++|.++||+|||+||++|+++||++|++||.++|++++.+..+....++. . ..+.++|+|.
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~---~----------~~~~i~P~p~ 87 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQG---L----------PVPAIEPVPE 87 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC---C----------chhccCCCCh
Confidence 34678999999999999999999999999999999999999998877664332111 0 0124677766
Q ss_pred CCCCCCC--cchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHH
Q 005946 376 EGSLGPC--ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFV 451 (668)
Q Consensus 376 ~~~l~~~--~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~ 451 (668)
. .+.+. .+.+.. .+|+++|+++|++||||||+|||||||| |+..||+ ++|++++++||||+++ ++|+
T Consensus 88 ~-~~~~~~~~~~~~~---~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~-----e~I~ 158 (493)
T PLN02435 88 N-SVSTVEERTPEDR---ERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQA-----ERIL 158 (493)
T ss_pred h-hccchhccChHHH---HHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHH-----HHHH
Confidence 5 33321 222222 4799999999999999999999999999 6777995 7899999999999999 5555
Q ss_pred hhc------------CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCC
Q 005946 452 KIE------------NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW 519 (668)
Q Consensus 452 ~~~------------~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~ 519 (668)
+++ .++.||||||||+.||++|++||++|+|||++++||+||+|+++||++.+ |+++|++|+
T Consensus 159 ~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~d------g~i~l~~~~ 232 (493)
T PLN02435 159 CVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKD------GKFIMETPF 232 (493)
T ss_pred HHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCC------CCcccCCCc
Confidence 542 25789999999999999999999999999999999999999999999987 899999999
Q ss_pred CcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc-----
Q 005946 520 ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER----- 593 (668)
Q Consensus 520 ~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~----- 593 (668)
+++|+|+||||+|.||+++|+|++|.++||+|+||+||||+|+ .+||.|||||+.+++||++|||+|+ .|+|+
T Consensus 233 ~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~-~~~EkvG~i~ 311 (493)
T PLN02435 233 KVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKA-YPQEKVGVFV 311 (493)
T ss_pred ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecC-CCCCceeEEE
Confidence 9999999999999999999999999999999999999999998 5999999999999999999999998 45442
Q ss_pred --------------------------------------cceeeeHHHHHHHhhcc-cCccccccccCCCccccCCCCcce
Q 005946 594 --------------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFID 634 (668)
Q Consensus 594 --------------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kki~~~d~~~~~~~~ 634 (668)
|+|+||++||+++++.+ ..||||+|+|||||+|
T Consensus 312 ~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~-------- 383 (493)
T PLN02435 312 RRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIH-------- 383 (493)
T ss_pred EecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccC--------
Confidence 37999999999998654 4699999999999984
Q ss_pred eccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 635 VIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 635 v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
.+|||||||+||||+||+|+ +++++||.
T Consensus 384 ---~~~ngiK~E~FiFDvf~~a~--~~~~~eV~ 411 (493)
T PLN02435 384 ---GYTMGLKLEQFIFDAFPYAP--STALFEVL 411 (493)
T ss_pred ---CCcceEEeeeeeecchhhcC--ceEEEEEc
Confidence 35799999999999999998 99999995
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.3e-74 Score=639.34 Aligned_cols=339 Identities=16% Similarity=0.256 Sum_probs=283.2
Q ss_pred HHHHHHcCcccccccccCCCHHHHHHHHHHH-h---cCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCC
Q 005946 301 KKKLREMEQQHVFHGFRFGEKYQTSLLANHI-V---GINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGE 376 (668)
Q Consensus 301 ~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql-~---~id~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~ 376 (668)
.++|.++||+|||+||++|+++||++|.+|| . ++|++.+++.++......+....+. .. ..+.....++|+|..
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~~~ 79 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVG-ID-IDSIHNCNIEPPNNN 79 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhcccccc-cc-cccccccccCCCCcc
Confidence 3579999999999999999999999999999 5 8999988887764321111000000 00 000112346788775
Q ss_pred CCCCCCc-chhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhh
Q 005946 377 GSLGPCA-RAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFVKI 453 (668)
Q Consensus 377 ~~l~~~~-~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~ 453 (668)
.+.+.. +++++ .+|++.|+++|++||||+|+||||+||| |...|| ++++++++++||||+++ ++|.++
T Consensus 80 -~~~~~~~~~~~~---~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~-----erI~~l 150 (482)
T PTZ00339 80 -TFIDIYEKEKER---KELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHC-----EKVRRL 150 (482)
T ss_pred -cccccccCHHHH---HHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHH-----HHHHHH
Confidence 444322 23333 5899999999999999999999999999 555699 57888889999999998 677665
Q ss_pred c----------CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCccc
Q 005946 454 E----------NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQ 523 (668)
Q Consensus 454 ~----------~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~ 523 (668)
+ .++.||||||||..||+.|++||++|+|||++++||+||+|+++||++.+ + |+++|+++++++|
T Consensus 151 ~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~-~----g~ill~~~~~i~~ 225 (482)
T PTZ00339 151 EEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDEN-T----GRFIMSSQGSLCT 225 (482)
T ss_pred hhhhhcccccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecC-C----CCcccCCCCceee
Confidence 2 24679999999999999999999999999999999999999999999876 3 7999999999999
Q ss_pred ccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCC-cEEEEEeeccCCCCcc--------
Q 005946 524 APVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGA-DIGFQISEYAKHSEER-------- 593 (668)
Q Consensus 524 ~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~-d~~~kvV~k~~~~~E~-------- 593 (668)
+|+||||+|.+|+++|+|++|.++|++|+||+||||+|+ .+||.|||||+++++ +|++||| |+ .++|+
T Consensus 226 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~-~~~EkvG~~~~~~ 303 (482)
T PTZ00339 226 APGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KR-EDDESVGVFCLKD 303 (482)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cC-CCCCceeEEEEeC
Confidence 999999999999999999999999999999999999999 599999999999999 9999999 55 34453
Q ss_pred ---------------------------------cceeeeHHHHHHHhh-c-ccCccccccccCCCccccCCCCcceeccC
Q 005946 594 ---------------------------------FNTMLSMNVMKKLTN-H-INKLEFYATPKLNSHVEKVDKEFIDVIPA 638 (668)
Q Consensus 594 ---------------------------------~~h~fs~~fl~~~~~-~-~~~L~~H~a~Kki~~~d~~~~~~~~v~P~ 638 (668)
++|+||++||+++++ . ..+||||+|+|||||+| .+ . +
T Consensus 304 g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~---~~--~---~ 375 (482)
T PTZ00339 304 YEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYIN---GP--T---D 375 (482)
T ss_pred CcccEEEEeccChhhhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeC---CC--C---C
Confidence 379999999999864 3 35799999999999995 21 1 7
Q ss_pred CCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 639 APNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 639 ~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+|||||||+||||+||+|+ +++++||.
T Consensus 376 ~png~K~E~FiFDvf~~~~--~~~~~ev~ 402 (482)
T PTZ00339 376 KTMGIKLEAFIFDIFRYAK--NVLILEVD 402 (482)
T ss_pred CcceeeehhhhhhHHHhcc--ccceeeec
Confidence 8999999999999999998 99999996
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.1e-72 Score=600.76 Aligned_cols=335 Identities=21% Similarity=0.290 Sum_probs=290.3
Q ss_pred HHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCCC
Q 005946 298 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 377 (668)
Q Consensus 298 ~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~ 377 (668)
..++..|.++||+|||++|++|+++++.+|++||+.+|+.++...+. .+++ +.. .....+.|+|...
T Consensus 4 ~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~---~~a~-----~~~-----~~~~~~~p~p~~~ 70 (477)
T KOG2388|consen 4 TKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQR---ISAN-----EDS-----KPVGEIRPVPESK 70 (477)
T ss_pred hHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhh---cChh-----hcc-----CcccccCCCCccc
Confidence 56788999999999999999999999999999999999987766554 1111 100 1123466666641
Q ss_pred CCCC-CcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhc
Q 005946 378 SLGP-CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIE 454 (668)
Q Consensus 378 ~l~~-~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~ 454 (668)
.... ....++. +.|+..|+.+|++|++|++++||||||| |...||+ +++++++++||||+|+ ++|++++
T Consensus 71 ~~~~~~~~~~d~---d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qa-----e~il~lq 142 (477)
T KOG2388|consen 71 SWPLKERGLDDV---DQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQA-----ERILKLQ 142 (477)
T ss_pred cceecccCchhh---hHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhH-----HHHHHHH
Confidence 2221 1112222 3599999999999999999999999999 6666994 7999999999999999 6666652
Q ss_pred --------CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccC
Q 005946 455 --------NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPV 526 (668)
Q Consensus 455 --------~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~ 526 (668)
+++.||||||||+.|++.|++||+.|+|||++++||+||+|+++||++.+ ||++|+.+.+++++|+
T Consensus 143 ~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~------gk~~le~k~~~a~ap~ 216 (477)
T KOG2388|consen 143 ELASMAVSDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLD------GKFILEQKNSLAAAPD 216 (477)
T ss_pred HHHhhhhccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccC------CceeccCccchhcCCC
Confidence 46899999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred CCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc-cCHHHHHHHHHcCCcEEEEEeeccCCCCcc------------
Q 005946 527 GSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-GNSMFLGFVKSCGADIGFQISEYAKHSEER------------ 593 (668)
Q Consensus 527 G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~------------ 593 (668)
||||+|.|+..+ |.+|.+|||.|+|||||||+|++ +||.|||||+.+++||++|+|+|.+ |.|.
T Consensus 217 gngg~y~ai~~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~-p~E~vG~~~~~~~G~~ 293 (477)
T KOG2388|consen 217 GNGGLYRAIKDQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKIN-PGEVVGIVALKGQGTP 293 (477)
T ss_pred CCcHHHHHHHhh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccC-CCCceEEEEecCCCce
Confidence 999999999998 99999999999999999999995 9999999999999999999999995 3442
Q ss_pred ------------------------------cceeeeHHHHHHHhhccc-CccccccccCCCccccCCCCcceeccCCCCe
Q 005946 594 ------------------------------FNTMLSMNVMKKLTNHIN-KLEFYATPKLNSHVEKVDKEFIDVIPAAPNS 642 (668)
Q Consensus 594 ------------------------------~~h~fs~~fl~~~~~~~~-~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~ 642 (668)
|||+|+++||+++++.+. .||||+|.|||||+ |.+|.+++|++|||
T Consensus 294 ~vvEYsEi~~~~a~~~~~d~g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~---~~~g~~~kP~kpnG 370 (477)
T KOG2388|consen 294 LVVEYSELDAELAKAKAPDGGRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYV---DSTGKLVKPTKPNG 370 (477)
T ss_pred eEEEecccCHHHHhhcccccCccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhcccccc---ccCCcccCCCCCCc
Confidence 379999999999988754 59999999999999 55688999999999
Q ss_pred EEEEEEEecccCCCCCCceEEEEec
Q 005946 643 YELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 643 ~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
||+|+||||+||+++ +|++|||.
T Consensus 371 ik~E~fifdvf~~~k--~f~~meV~ 393 (477)
T KOG2388|consen 371 IKLEQFIFDVFPSAK--KFGLMEVP 393 (477)
T ss_pred eeEEeeeeeeccccc--ceeEEecc
Confidence 999999999999998 99999985
No 4
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.4e-65 Score=546.10 Aligned_cols=258 Identities=24% Similarity=0.407 Sum_probs=237.0
Q ss_pred hHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhc--------CCCcccEE
Q 005946 393 SLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIE--------NRASMPLV 462 (668)
Q Consensus 393 ~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~--------~~~~iPl~ 462 (668)
+|+++|+++|++|+||+|+||||+||| |...|| ++++++++++|+|++++ +++++++ .++.||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~-----e~l~~l~~~~~~~~~~~~~ip~~ 76 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQA-----ERILKLQELAGEASGKKVPIPWY 76 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHH-----HHHHHHHHHHhhccCCCCCceEE
Confidence 689999999999999999999999999 566699 57888889999999988 6666552 34789999
Q ss_pred EeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHH
Q 005946 463 LVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIK 542 (668)
Q Consensus 463 IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~ 542 (668)
||||+.||+.|++||++|+|||+++++|+||.|+++||++.+ |+++|+++++++|+|+||||+|.+|+++|+|+
T Consensus 77 imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~------g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~ 150 (323)
T cd04193 77 IMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFD------GKILLEEKGKIAMAPNGNGGLYKALQTAGILE 150 (323)
T ss_pred EEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCC------CccccCCCCccccCCCCchHHHHHHHHCChHH
Confidence 999999999999999999999999999999999999999987 79999999999999999999999999999999
Q ss_pred HHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc----------------------------
Q 005946 543 NLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER---------------------------- 593 (668)
Q Consensus 543 ~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~---------------------------- 593 (668)
+|.++|++|++|+||||+|+ .+||.|||||+++++||++|||+|+ .++|+
T Consensus 151 ~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~ 229 (323)
T cd04193 151 DMKKRGIKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVDGKPQVVEYSEISDELAEKRD 229 (323)
T ss_pred HHHhCCCEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEECCeEEEEEeecCCHHHHhccC
Confidence 99999999999999999998 6999999999999999999999999 55553
Q ss_pred ------------cceeeeHHHHHHHhhccc-CccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccCCCCCCc
Q 005946 594 ------------FNTMLSMNVMKKLTNHIN-KLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDK 660 (668)
Q Consensus 594 ------------~~h~fs~~fl~~~~~~~~-~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~~ 660 (668)
++|+||++||+++++... .||||+|+||+||+| .+|..|+|++|||||||+||||+|++|+ +
T Consensus 230 ~~g~l~f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d---~~~~~~~p~~~n~~klE~fifd~~~~~~--~ 304 (323)
T cd04193 230 ADGELQYNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVD---LEGGLVKPDEPNGIKLELFIFDVFPFAK--N 304 (323)
T ss_pred cCCcEecccchHhhheeCHHHHHHHHhhccccCCceEeccccCccc---CcCcEeccCCCcEEEeHHHHHHHHHhCC--c
Confidence 268999999999987532 699999999999984 4456899999999999999999999997 9
Q ss_pred eEEEEec
Q 005946 661 VCVMEIT 667 (668)
Q Consensus 661 ~~v~ev~ 667 (668)
++++||+
T Consensus 305 ~~~~eV~ 311 (323)
T cd04193 305 FVCLEVD 311 (323)
T ss_pred eEEEEEC
Confidence 9999996
No 5
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=8.8e-59 Score=524.75 Aligned_cols=278 Identities=16% Similarity=0.239 Sum_probs=236.5
Q ss_pred hhHHHHHHHHHHHHcCcccccccccCC--CHHHHHHHHHHHhcCCHH-------HHHHHHHhccCCccccchhhhhhhhh
Q 005946 293 FQKRLIAAKKKLREMEQQHVFHGFRFG--EKYQTSLLANHIVGINSK-------LLQQALQNIEIPSKRWNATELMNATK 363 (668)
Q Consensus 293 ~~~~~~~l~~~L~~~gQ~HL~~~~~~l--~~~ek~~L~~ql~~id~~-------~l~~a~~~~~~~~~~~~~~~~~~~~~ 363 (668)
+..+.++|+++|.++||+|||+||+++ +++||++|++||..+|.. ++..+.+.+..+.. +.+
T Consensus 23 ~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~--~~~------- 93 (615)
T PLN02830 23 LSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKE--GVN------- 93 (615)
T ss_pred CChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc--CCC-------
Confidence 445668899999999999999999998 899999999999999987 55555554432211 111
Q ss_pred hhhhccccc-CCCCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHH
Q 005946 364 AELMISSLK-ISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALL 440 (668)
Q Consensus 364 ~~~~~~~~~-vp~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l 440 (668)
..+.+.| +|.+ .+...++ +++ .+|++.|+++| ||||||+|||||||| |+.+|| ++++++++++||||+
T Consensus 94 --~~~~i~P~vp~~-~~~~~~~-~~~---~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql 164 (615)
T PLN02830 94 --PFEGWTPSVPEG-EVLEYGS-EEF---VELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQL 164 (615)
T ss_pred --chhhcccCCCcc-ccccccc-hhh---hHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHH
Confidence 1134677 4665 3332333 223 47999999999 799999999999999 777899 578888999999999
Q ss_pred HHHhhhhHHHHhh---------cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccc
Q 005946 441 QTLLSDDQRFVKI---------ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKF 511 (668)
Q Consensus 441 ~~ll~~~e~i~~~---------~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~g 511 (668)
++ ++|.++ +.++.||||||||+.||++|++||++|+|||++++||+||+|+++||++.+ + |
T Consensus 165 ~~-----e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~-~----g 234 (615)
T PLN02830 165 YI-----ESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDN-D----A 234 (615)
T ss_pred HH-----HHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecC-C----C
Confidence 98 555554 246889999999999999999999999999999999999999999999876 4 7
Q ss_pred eeccCC--CCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccC
Q 005946 512 KILMKS--PWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAK 588 (668)
Q Consensus 512 kill~~--~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~ 588 (668)
+++|++ +++++|+|+||||+|.+|+++|+|++|.++|++|++|+||||+|+ .+||.|||||+.++++|++|||+|+
T Consensus 235 ~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~- 313 (615)
T PLN02830 235 RLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRK- 313 (615)
T ss_pred cccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECC-
Confidence 999998 899999999999999999999999999999999999999999999 5999999999999999999999996
Q ss_pred CCCcccceeeeH
Q 005946 589 HSEERFNTMLSM 600 (668)
Q Consensus 589 ~~~E~~~h~fs~ 600 (668)
+.|+++.++.+
T Consensus 314 -~~E~vGvi~~~ 324 (615)
T PLN02830 314 -AKEAIGAIAKL 324 (615)
T ss_pred -CCcccceEEEE
Confidence 67999877764
No 6
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=8.3e-58 Score=479.79 Aligned_cols=231 Identities=15% Similarity=0.213 Sum_probs=207.8
Q ss_pred CCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhc--CCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 405 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIE--NRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 405 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~--~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+|||||+|||||||| |+..||++ +++++++||||+++ +++++++ .++.||||||||+.||++|++||++|+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~-~~v~~~~s~l~l~~-----~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~ 75 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSL-IEVRDGKTFLDLTV-----QQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA 75 (300)
T ss_pred CcEEEEEecCCcccccCCCCCcee-eecCCCCcHHHHHH-----HHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC
Confidence 689999999999999 66779963 45579999999998 6776663 468899999999999999999999987
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceeccC---CCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCC
Q 005946 482 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK---SPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 558 (668)
Q Consensus 482 ~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~---~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vD 558 (668)
+ +++||.||+|+++||++.+ |++.++ ++++++|+|+||||+|.+|+++|+|++|.++|+||++|+|||
T Consensus 76 ~---~~~~v~~F~Q~~~P~~~~~------~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvD 146 (300)
T cd00897 76 G---VNVDIHTFNQSRYPRISKE------TLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNID 146 (300)
T ss_pred C---CccCeEEEecCCcccCccc------cCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecc
Confidence 6 7899999999999999998 688887 789999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHcCCcEEEEEeeccCCCCcc--------------------------------------cceeeeH
Q 005946 559 PRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEER--------------------------------------FNTMLSM 600 (668)
Q Consensus 559 N~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------------~~h~fs~ 600 (668)
|+++.+||.|||||+.+++++++|||+|+ .++|+ +||+|++
T Consensus 147 NL~a~~Dp~~lg~~~~~~~~~~~evv~Kt-~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l 225 (300)
T cd00897 147 NLGATVDLRILNHMVDNKAEYIMEVTDKT-RADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNL 225 (300)
T ss_pred cccccCCHHHHHHHHhcCCceEEEEeecC-CCCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEH
Confidence 96667999999999999999999999999 55553 2699999
Q ss_pred HHHHHHhhcc-cCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 601 NVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 601 ~fl~~~~~~~-~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+||+++++.. .+||||+|.|+++ |+ ||+||||+||||+|++++ +++++||.
T Consensus 226 ~~L~~~~~~~~~~lp~h~~~K~v~-------------p~-~~~~qlE~~i~da~~~~~--~~~~~eV~ 277 (300)
T cd00897 226 KAVKRVVEENALDLEIIVNPKTVD-------------GG-LNVIQLETAVGAAIKNFD--NALGVNVP 277 (300)
T ss_pred HHHHHHHHhccCCCCeeecccccC-------------CC-CCEEEeHhHhhhHHHhCC--CcEEEEEC
Confidence 9999997643 3699999999973 33 999999999999999998 99999996
No 7
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=1.2e-57 Score=480.17 Aligned_cols=238 Identities=15% Similarity=0.153 Sum_probs=209.3
Q ss_pred eEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhh------cCCCcccEEEeCCccchHHHHHHHH
Q 005946 407 KAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKI------ENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~------~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
+|+|+|||||||| |+..||+ +++++++++||||+++ ++|+++ +.++.||||||||+.||++|++||+
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~-----~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe 75 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYL-----NYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLE 75 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHH-----HHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHH
Confidence 5999999999999 6677994 7889999999999999 555554 3468899999999999999999999
Q ss_pred HCCCCCCCCCcEEEEecCCcccccCCCCcccccee--ccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEc
Q 005946 479 DNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKI--LMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICT 556 (668)
Q Consensus 479 ~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gki--ll~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~ 556 (668)
+|+|||++++||+||+|+++||++.. + |++ +++++++++|+|+||||+|+||+++|+||+|.++|++|++|+|
T Consensus 76 ~n~yFGl~~~~V~fF~Q~~~P~l~~~-~----g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~ 150 (315)
T cd06424 76 ENNYFGLEKDQVHILKQEKVFCLIDN-D----AHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQ 150 (315)
T ss_pred HCCccCCCcccEEEEecCceEEEecC-C----CCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEe
Confidence 99999999999999999999999743 3 688 6899999999999999999999999999999999999999999
Q ss_pred CCccccc-cCHHHHHHHHHcCCcEEEEEeeccCCCCcc------------------------------------------
Q 005946 557 ANPRNAI-GNSMFLGFVKSCGADIGFQISEYAKHSEER------------------------------------------ 593 (668)
Q Consensus 557 vDN~l~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~------------------------------------------ 593 (668)
|||+|++ +||.|||||+++++||++|||+|. |.|+
T Consensus 151 vdN~L~~~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~ 228 (315)
T cd06424 151 DTNALAFKAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKT 228 (315)
T ss_pred cchhhhhccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccc
Confidence 9999995 999999999999999999999865 3342
Q ss_pred ---------cceeeeHHHHHHHhhcccCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecc---cCCCCCCce
Q 005946 594 ---------FNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSC---LNACSLDKV 661 (668)
Q Consensus 594 ---------~~h~fs~~fl~~~~~~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~---f~~~~~~~~ 661 (668)
++|+|+++|+.+..+. .+++|..+++++|.|. ..|..++|+ |||+||||+ |+.+. ++
T Consensus 229 ~~s~f~gNi~~~~f~l~~~~~~l~~--~~~~~~~~~n~ky~d~--~~~~~~~p~-----rlE~~m~D~~~~f~~~~--~~ 297 (315)
T cd06424 229 GFSPFPGNINQLVFSLGPYMDELEK--TKGAIPEFINPKYKDA--TKTAFKSPT-----RLECMMQDIPLLFEEDY--RV 297 (315)
T ss_pred ccccCCCeeeeEEEeHHHHHHHHhh--ccccCeeeecCCcccC--CCCeecCch-----HHHHHHHHHHHhhcccc--ee
Confidence 1599999999998764 3566666778888842 236788784 999999999 77786 99
Q ss_pred EEEEec
Q 005946 662 CVMEIT 667 (668)
Q Consensus 662 ~v~ev~ 667 (668)
+++||.
T Consensus 298 ~~~~~~ 303 (315)
T cd06424 298 GFTVLD 303 (315)
T ss_pred EEEEEc
Confidence 999986
No 8
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-53 Score=460.53 Aligned_cols=331 Identities=18% Similarity=0.213 Sum_probs=264.2
Q ss_pred HHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCC--HHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCC
Q 005946 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGIN--SKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKIS 374 (668)
Q Consensus 297 ~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 374 (668)
+......+.+..|.|++..|..+++.+..+..+++..+| +.++++++.. .+.+. .. ...++.|..
T Consensus 15 f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d~~f~l~~~~ll~---~s~~s-~~---------~~~ki~~~~ 81 (472)
T COG4284 15 FNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLDIFFFLFSRYLLN---TSKAS-TQ---------EWDKIRPPN 81 (472)
T ss_pred hhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhHHHHHHHHHHHhh---cCccc-ce---------eecccCCCC
Confidence 456677888999999999999999966666677755555 4566666643 11110 00 011233322
Q ss_pred CCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhh
Q 005946 375 GEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKI 453 (668)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~ 453 (668)
.+ .+. ..++.. .+++ |+..|..||+|||+|||||||| |+..||++ +++..++|||+|++ ++|..+
T Consensus 82 ~d-~~~---~~~~~~--~~~~--~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl-~~V~~gks~~dl~~-----~qIk~l 147 (472)
T COG4284 82 PD-DVV---DYEKKI--LEGW--GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGL-FEVKDGKSLFDLQA-----EQIKYL 147 (472)
T ss_pred hh-hhc---cchhhc--cchh--hhhhhhcCceEEEEecCCcccccccCCCcee-EEecCCCcHHHHHH-----HHHHHH
Confidence 12 222 111111 1222 8888889999999999999999 77789974 56669999999998 555544
Q ss_pred --cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCccc-ccCCCCccccceeccCCCCC-cccccCCCc
Q 005946 454 --ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPI-VSRSPTEQNKFKILMKSPWE-TLQAPVGSG 529 (668)
Q Consensus 454 --~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~-v~~~~~g~~~gkill~~~~~-i~~~P~G~G 529 (668)
+.+++|||||||| .|++.|..||+.|+|||+++++|.||.|+.+|| ++.+ |+.++.+.++ ++|+|+|||
T Consensus 148 n~~~~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~s------g~~~~~~~~~~~~~~P~GnG 220 (472)
T COG4284 148 NRQYNVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDS------GLPFLESDDSNLAWYPPGNG 220 (472)
T ss_pred HHHhCCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeeccc------CccccccCCcccccCCCCCc
Confidence 3569999999999 999999999999999999999999999999995 5554 7888877777 999999999
Q ss_pred hHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCCccc---------------
Q 005946 530 GVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERF--------------- 594 (668)
Q Consensus 530 gv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~--------------- 594 (668)
|+|.+|..||++++|.++|++|++|+||||+.+.+||.|+|+++.+++++++|++.|+ .++|++
T Consensus 221 ~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~g~~rllEy 299 (472)
T COG4284 221 DLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLKFLGFMAETNYEYLMETTDKT-KADEKVGILVTYDGKLRLLEY 299 (472)
T ss_pred cHHHHHHhcchHHHHHhcCceEEEEecccccccccCHHHHHHHHhcCcceeEEEeecc-cccccceEEEEeCCceEEEEE
Confidence 9999999999999999999999999999994447999999999999999999999999 455531
Q ss_pred --------------------------ceeeeHHHHHHHhhcccCccccccccCCCccccCCCCcceeccCCCCeEEEEE-
Q 005946 595 --------------------------NTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRS- 647 (668)
Q Consensus 595 --------------------------~h~fs~~fl~~~~~~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~- 647 (668)
.|+++++||.+.... .||+|.|+||||+.+ .-.+.-+|..||++|||.
T Consensus 300 sev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~~~l--~Lpi~~a~Kki~~~~---~~~~~~t~i~~~i~kfe~~ 374 (472)
T COG4284 300 SEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEAAYL--NLPIHKAIKKIPQLD---NIIQLTTAIGKNISKFENE 374 (472)
T ss_pred ecCChhHhhhhccccceeeeccccceeehhHHHHHHhhhcc--CCcchhhhcccCccc---cceeeccccccchhhcccc
Confidence 499999999887664 799999999999984 224678899999999996
Q ss_pred EE-ecccCCCCCCceEEEEec
Q 005946 648 SI-YSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 648 fI-fD~f~~~~~~~~~v~ev~ 667 (668)
|| ||+|.+.+.++++++.|+
T Consensus 375 FI~fDlF~~~s~~~~~~~~vp 395 (472)
T COG4284 375 FIPFDLFLYKSDENGGLLLVP 395 (472)
T ss_pred ccceeeeEEEecCCCceEecc
Confidence 99 999999966699998875
No 9
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.3e-53 Score=467.08 Aligned_cols=242 Identities=18% Similarity=0.302 Sum_probs=202.2
Q ss_pred HhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhh--cCCCcccEEEeCCccchHH
Q 005946 396 KKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKI--ENRASMPLVLVLPALEMQM 472 (668)
Q Consensus 396 ~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~--~~~~~iPl~IMTS~~t~~~ 472 (668)
+.|+.+++.||||||+|||||||| |+.+||++ +++.+++||+++++ +++.++ ..++.||||||||+.||++
T Consensus 46 ~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~-~~v~~~~t~ldl~~-----~qi~~l~~~~~~~iPl~iMtS~~T~~~ 119 (420)
T PF01704_consen 46 DEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGL-IPVREGKTFLDLIV-----EQIEALNKKYGVDIPLYIMTSFNTHED 119 (420)
T ss_dssp HHHHHHHHTTCEEEEEEEESBSGCCTESSBGGG-SEEETTEEHHHHHH-----HHHHHHHHHHTTT-EEEEEEETTTHHH
T ss_pred ccchhHHhhCCEEEEEEcCcccCccCCCCCCcc-eecCCcccHHHHHH-----HHHHHHhccccccceEEEecCcccHHH
Confidence 789999999999999999999999 77789974 56789999999987 444443 2468999999999999999
Q ss_pred HHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCC-----cccccCCCchHhHHHhhCchHHHHHHc
Q 005946 473 LEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWE-----TLQAPVGSGGVFSLLSSHNIIKNLDEL 547 (668)
Q Consensus 473 T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~-----i~~~P~G~Ggv~~aL~~~gil~~l~~~ 547 (668)
|++||++ |||++.+ |++|+|+++||++.+ |++.++++.+ -.|+|+||||+|.+|++||+|++|.++
T Consensus 120 T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~d------~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~ 190 (420)
T PF01704_consen 120 TRKFLEK--YFGLDVD-VFFFKQSKLPAIDAD------GKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLAR 190 (420)
T ss_dssp HHHHHHH--GCGSSCC-EEEEEE-EEEEEETT------TTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHH--hcCCCcc-eEEEeecCcceEeCC------CccccccccccccchhhccCCCCcceehhhhccChHHHHHHc
Confidence 9999999 9999988 999999999999998 6888877652 247899999999999999999999999
Q ss_pred CceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCccc--------------------------------
Q 005946 548 GVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEERF-------------------------------- 594 (668)
Q Consensus 548 Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~-------------------------------- 594 (668)
|++|+||+|||| |+ .+||.||||+++++++|++|||+|+ .++|+.
T Consensus 191 G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~evv~Kt-~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~ 268 (420)
T PF01704_consen 191 GIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEVVPKT-SPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGF 268 (420)
T ss_dssp T--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEEEE-C-STTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTS
T ss_pred CCeEEEEEecCC-cccccCHHHHHHHHhccchhheeeeecC-CCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccc
Confidence 999999999999 65 7999999999999999999999999 566641
Q ss_pred ------ceeeeHHHHHHHhhc-ccCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 595 ------NTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 595 ------~h~fs~~fl~~~~~~-~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
|++|+++||+++.+. ..+||||+|+|+|||+| ..+|++|||+||++.+...+ +..++||.
T Consensus 269 ~~FntnNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d-----------~~~~~~q~Et~i~~~i~~f~--~~~~v~V~ 335 (420)
T PF01704_consen 269 LLFNTNNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVD-----------NGIKVIQFETAIGFAIFQFD--NSFAVEVP 335 (420)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEEC-----------TEEEEEEEECGGGGGGGGCT--SEEEEEE-
T ss_pred eEEEeceeeEEHHHHHHHHHhccccCccEEcchhccccc-----------CCccEEeehhhhhchHhhcc--CcEEEEEc
Confidence 588999999999765 34799999999999984 44789999999977665555 67777985
No 10
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=4.8e-51 Score=448.44 Aligned_cols=232 Identities=14% Similarity=0.164 Sum_probs=203.3
Q ss_pred hhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhh--cCCCcccEEEeCCccchHHHHH
Q 005946 399 NHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKI--ENRASMPLVLVLPALEMQMLEK 475 (668)
Q Consensus 399 l~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~--~~~~~iPl~IMTS~~t~~~T~~ 475 (668)
.++| +|+|||+|||||||| |+..||++ +++++++|||||++ +++.++ ..++.||||||||+.||++|++
T Consensus 74 ~~~L--~k~avlkLnGGlGTrmG~~~PKs~-i~v~~~~sfldl~~-----~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~ 145 (469)
T PLN02474 74 KKLL--DKLVVLKLNGGLGTTMGCTGPKSV-IEVRNGLTFLDLIV-----IQIENLNKKYGCNVPLLLMNSFNTHDDTQK 145 (469)
T ss_pred HHHH--hcEEEEEecCCcccccCCCCCcee-EEcCCCCcHHHHHH-----HHHHHHHHHcCCCceEEEECCCchhHHHHH
Confidence 3356 699999999999999 77789974 46789999999988 555544 3578999999999999999999
Q ss_pred HHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCC---CcccccCCCchHhHHHhhCchHHHHHHcCceEE
Q 005946 476 LFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW---ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYI 552 (668)
Q Consensus 476 ~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~---~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi 552 (668)
||++|+||+ .+|++|+|+++||++.+ |++.+++++ +.+|+|+||||+|.+|++||+|++|.++|+||+
T Consensus 146 ~l~k~~~~~---~~i~~F~Q~~~P~l~~~------~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyi 216 (469)
T PLN02474 146 IVEKYTNSN---IEIHTFNQSQYPRVVAD------DFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYV 216 (469)
T ss_pred HHHHcCCCc---cceEEEecCceeeEecC------CCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEE
Confidence 999999985 58999999999999998 688888776 455999999999999999999999999999999
Q ss_pred EEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCCcc--------------------------------------c
Q 005946 553 QICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEER--------------------------------------F 594 (668)
Q Consensus 553 ~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------------------------------------~ 594 (668)
+|+|+||+++.+||.||||++.+++++++||++|+ .++|+ +
T Consensus 217 fv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt-~~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtn 295 (469)
T PLN02474 217 FIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKT-LADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTN 295 (469)
T ss_pred EEEecCccccccCHHHHHHHHhcCCceEEEEeecC-CCCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeee
Confidence 99999997668999999999999999999999999 55543 2
Q ss_pred ceeeeHHHHHHHhhcccCccccccccCCCccccCCCCcceeccCCCCeEEEEE---EEecccCCCCCCceEEEEec
Q 005946 595 NTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRS---SIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 595 ~h~fs~~fl~~~~~~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~---fIfD~f~~~~~~~~~v~ev~ 667 (668)
||+|+++||+++.+. ..||+|+. ++|+++||+|+|+ ||||+|++.+ +++++||.
T Consensus 296 n~w~~L~~l~~~~~~-~~l~~~~I----------------~n~k~~~g~kv~q~Et~ig~ai~~f~--~~~~v~Vp 352 (469)
T PLN02474 296 NLWVNLKAIKRLVEA-DALKMEII----------------PNPKEVDGVKVLQLETAAGAAIRFFD--NAIGINVP 352 (469)
T ss_pred eEEEEHHHHHHHhhc-CCCCceee----------------cCCCCCCCeeEEEeHHHHHHHHHhCC--CceEEEEc
Confidence 799999999999764 45999962 3567778888888 6999999998 99999996
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.3e-42 Score=361.51 Aligned_cols=243 Identities=13% Similarity=0.113 Sum_probs=199.3
Q ss_pred eEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcC----CCcccEEEeCCccchHHHHHHHHHC
Q 005946 407 KAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIEN----RASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~----~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
||+|+||||+||| |...|| ++++.+++++|||++++ +++.+++. ++.|||+||||+.||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~-----~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIG-----EKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHH-----HHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHc
Confidence 6999999999999 555699 57888899999999988 66666532 6789999999999999999999999
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcc
Q 005946 481 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPR 560 (668)
Q Consensus 481 ~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~ 560 (668)
+ ++.++|++|+|+++||++.+ |.++++++++++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~~~------~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~ 146 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKNDD------DARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNL 146 (266)
T ss_pred C---CCCCceEEEEeCCceEEeCC------CCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCcc
Confidence 8 56789999999999999998 57788999999999999999999999999999999999999999999999
Q ss_pred ccc-cCHHHHHHHHHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh-cccCccccccccCCCccccCCCCcceeccC
Q 005946 561 NAI-GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN-HINKLEFYATPKLNSHVEKVDKEFIDVIPA 638 (668)
Q Consensus 561 l~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~-~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~ 638 (668)
|++ +||.++||++.+++++++|||+|+ .++|+.++++..+ -.++.. .|+++|--.+.+..+.-+..+.......|.
T Consensus 147 la~v~DP~~lG~~~~~~~~~~~kvv~K~-~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (266)
T cd04180 147 LVKVADPLFIGIAIQNRKAINQKVVPKT-RNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLF 224 (266)
T ss_pred CccccCHHHHHHHHHcCCCEEEEEEECC-CCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccc
Confidence 996 699999999999999999999999 7899999988654 112222 245676555555433221112223455666
Q ss_pred CCCeEEEEEEEe-----cccCCCCCCceEEEEec
Q 005946 639 APNSYELRSSIY-----SCLNACSLDKVCVMEIT 667 (668)
Q Consensus 639 ~pN~~KlE~fIf-----D~f~~~~~~~~~v~ev~ 667 (668)
+.|.+=|..--. |+|++++ +++++||.
T Consensus 225 n~~~~~~~l~~l~~~~~d~~~~~~--~~~~~~v~ 256 (266)
T cd04180 225 NTNNLINFLVEFKDRVDDIIEFTD--DIVGVMVH 256 (266)
T ss_pred eEEEEEEEHHHHHHHHHHHHhccC--ceEEEEeC
Confidence 666664442222 8999998 99999996
No 12
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.3e-41 Score=332.69 Aligned_cols=172 Identities=39% Similarity=0.637 Sum_probs=153.6
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 005946 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 150 (668)
Q Consensus 71 ~~~~~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~ 150 (668)
|+.+++++.||+|++|||+||||||+|+||+|+.+|. .+.+|+ .. ....+++++++.|.++ +.+++||+||+|
T Consensus 1 m~~~~~~v~iG~i~~~hGlkGevkv~~~td~p~~~~~-~~~~~~-~~---~~~~~~~~v~~~~~~~--~~~lvkf~gi~~ 73 (172)
T PRK00122 1 MSKPEDLLVVGKIVSAHGIKGEVKVKSFTDFPERIFD-YGPWLL-GK---GGEWQEVEIESGRFHK--GFLIVKFEGVDD 73 (172)
T ss_pred CCCccceEEEEEEECCCcccEEEEEEEecCCHHHHcC-cCcEEE-cc---CCceEEEEEEEEEEEC--CEEEEEECCCCC
Confidence 5677899999999999999999999999999986554 566666 32 1234678999999885 469999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccc
Q 005946 151 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASS 230 (668)
Q Consensus 151 re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~ 230 (668)
||+|++|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||+|+|+.
T Consensus 74 ~~~Ae~l~g~~l~i~~~~lp~l~~~e~y~~dLiG~~V~d-~~g~~lG~V~~v~~~~a~dll~I~~--------------- 137 (172)
T PRK00122 74 RNAAEALKGCELFVPRSQLPELEEDEYYWHDLIGLEVVD-EDGEELGKVTDILETGANDVLVVLK--------------- 137 (172)
T ss_pred HHHHHHhCCCEEEEEHHHCCCCCCCCEEHHHhCCcEEEe-CCCcEEEEEEEEccCCCceEEEEEC---------------
Confidence 999999999999999999999999999999999999996 5688899999999999999999962
Q ss_pred cCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 005946 231 SASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (668)
Q Consensus 231 ~~~~~~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLe 269 (668)
.+++++||||+++||++||+++++|+|++|+||||
T Consensus 138 ----~~~~e~liP~~~~~V~~iD~~~~~I~v~~p~gLld 172 (172)
T PRK00122 138 ----DKKEERLIPFVEEVVKEVDLEAKRITVDWPEGLLD 172 (172)
T ss_pred ----CCCCEEEEecChhhCCEEECCCCEEEEeCCCcccC
Confidence 15689999999999999999999999999999986
No 13
>COG0806 RimM RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-41 Score=329.58 Aligned_cols=174 Identities=37% Similarity=0.651 Sum_probs=154.5
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 005946 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 150 (668)
Q Consensus 71 ~~~~~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~ 150 (668)
|.+.++++.||+|+++||+||||||+|+||+|+.+|.+ +..++..+ +. ..+.+++.++|.|+ +.+|++|+||+|
T Consensus 1 m~~~~~~~~vGkI~~t~Gi~GevrV~s~Td~~~~~~~~-~~~~~~~~--~~-~~~~~~v~~~r~~~--~~~i~kf~gi~d 74 (174)
T COG0806 1 MTKPENLLLVGKIVSTHGIRGEVRVKSFTDFPESLFDY-GPWLLLKP--GG-EWQELTVESVRKHK--NLLILKFKGIDD 74 (174)
T ss_pred CCCccceEEEEEEEecccccEEEEEEECCCCHHHhcCc-CcEEEecC--CC-ceEEEEEEEeeecC--CEEEEEeCCCCC
Confidence 55667999999999999999999999999999987764 55555432 22 33678899988875 589999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccc
Q 005946 151 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASS 230 (668)
Q Consensus 151 re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~ 230 (668)
|++|++|+|++|+++++++|+++||||||+|||||+|++ ++|+.||+|++|+++||||+|+|+..
T Consensus 75 r~~ae~l~G~~i~v~~~~~p~l~EdEfY~~DLiG~~V~~-~~g~~lG~V~~i~~~Ga~Dvl~V~~~-------------- 139 (174)
T COG0806 75 RNAAEALKGYEIFVDRSELPELEEDEFYYHDLIGLEVVT-EDGELLGKVTEILETGANDVLVVKAK-------------- 139 (174)
T ss_pred HHHHHHhcCcEEEEEHHHCCCCCCCcEEeEeecCcEEEc-CCCcEEEEEEEEeeCCCccEEEEEec--------------
Confidence 999999999999999999999999999999999999996 56999999999999999999999841
Q ss_pred cCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 005946 231 SASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (668)
Q Consensus 231 ~~~~~~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLe 269 (668)
..++++||||+++||++||+++|+|.|++++||+|
T Consensus 140 ----~~~k~~LIPf~~~~V~~Vd~~~k~I~v~~~~~ll~ 174 (174)
T COG0806 140 ----GGKKERLIPFVDAVVKEVDLEAKKIEVDPDEGLLD 174 (174)
T ss_pred ----CCCcEEEecchHheeeEEecCCCEEEEeccchhcC
Confidence 14589999999999999999999999999999986
No 14
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.3e-40 Score=324.92 Aligned_cols=169 Identities=27% Similarity=0.464 Sum_probs=149.5
Q ss_pred EEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhcc
Q 005946 78 VDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPL 157 (668)
Q Consensus 78 v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~L 157 (668)
+.||+|++|||+||||||+++||+|+ +|...+.+|+..+ .+....++++++++|.|++ .++++|+||+|||+|++|
T Consensus 1 ~~vG~I~~~hGlkGevkv~~~td~pe-~~~~~~~~~~~~~-~~~~~~~~~~v~~~r~~~~--~~lv~f~gi~~~e~Ae~L 76 (171)
T PRK14590 1 ISLGQLGKPFGIKGWLRVNVRGETLH-TLKAPATLKLGKE-DPQFPESEIALLEIRPHGG--KFLVRFEGYDTPEEAVKW 76 (171)
T ss_pred CeEEEEeCCEeeCeEEEEEEccCCHH-HhcCCCEEEEecC-CCCCCeeEEEEEEEEEECC--EEEEEECCCCCHHHHHHh
Confidence 46999999999999999999999999 6766777777432 1222346799999999854 589999999999999999
Q ss_pred cCCeEEEeCCCCCCCC-CCccchhccCCcEEEEccCCeEeE-EEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 005946 158 VGSTLLAREGDRPELE-DGEFYTRDLVGMRVVMKETGELVG-TVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (668)
Q Consensus 158 ~G~~l~v~~~dlp~L~-edEfY~~DLIG~~V~d~~~G~~lG-~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~ 235 (668)
+|+.||++++++|+|+ +|||||+|||||+|+| ++|..+| +|++|+++||||+|+|.. .
T Consensus 77 ~g~~l~i~~~~lp~l~~e~e~y~~dLiG~~V~d-~~g~~lGG~V~~v~~~~a~dllvV~~-------------------~ 136 (171)
T PRK14590 77 RGGSLFLPQELLPKIETKGEFYSEDLIGLQAID-ETGKPLNWKLTDVQDNPAHPILVFIK-------------------G 136 (171)
T ss_pred cCCEEEEEHHHCCCCCCCCCEEhHHccCcEEEe-CCCCEeeeEEEEEecCCCceEEEEEC-------------------C
Confidence 9999999999999985 9999999999999997 5677897 999999999999999963 1
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCcccc
Q 005946 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270 (668)
Q Consensus 236 ~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLel 270 (668)
+++++||||+++||++||+++++|+|++|+||.+|
T Consensus 137 ~~ke~LiP~v~~~V~~iD~~~k~I~v~~pegl~~~ 171 (171)
T PRK14590 137 EGEEILIPFLNVFVGDLDLEKQTIVLIQPEQWNEL 171 (171)
T ss_pred CCCEEEEechHHhcceEecCCCEEEEECCchHhcC
Confidence 46899999999999999999999999999999876
No 15
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=3.2e-40 Score=321.89 Aligned_cols=167 Identities=20% Similarity=0.345 Sum_probs=148.3
Q ss_pred CCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHH
Q 005946 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQA 154 (668)
Q Consensus 75 ~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~A 154 (668)
.+++.||+|++||||||||||+|+||+|+ +|...+.+|+..+ +....+++++++.|.|+ +.++++|+||+|||+|
T Consensus 3 ~~~v~vG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~l~~~--~~~~~~~~~v~~~~~~~--~~~lv~f~gi~dr~~A 77 (169)
T PRK14591 3 QDFVEIAKIGATYKLNGELNLYPLANSIE-TLLSYGDWYIQLP--ATNVWQQLKGESVLKRA--DKVYIKLANINNADTA 77 (169)
T ss_pred CcEEEEEEEeCCccccEEEEEEECCCCHH-HhcCCCeEEEEec--CCCceeEEEEEEEEEEC--CEEEEEEcCCCCHHHH
Confidence 35899999999999999999999999999 5666777777532 11234578889999885 4789999999999999
Q ss_pred hcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCC
Q 005946 155 RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 234 (668)
Q Consensus 155 e~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~ 234 (668)
++|+|+.||++++++|+|++|||||+|||||+|+| ++|..+|+|++|+++||||||+|+.
T Consensus 78 e~l~g~~l~v~~~~lp~l~e~E~Y~~dLiG~~V~d-~~g~~lG~V~~v~~~ga~dll~I~~------------------- 137 (169)
T PRK14591 78 KKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKN-INNDSFGVVVDIIETGANEVLVCKE------------------- 137 (169)
T ss_pred HHhcCCEEEEEHHHCCCCCCCCEEeeeecCcEEEe-CCCCEEEEEEEEeecCCceEEEEEc-------------------
Confidence 99999999999999999999999999999999997 5678899999999999999999973
Q ss_pred CCCcEEEEecccCccceeecCCCEEEEeCCCCc
Q 005946 235 ASGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (668)
Q Consensus 235 ~~gkevLIPfv~~fV~~VDle~k~I~V~~peGL 267 (668)
+++++||||+++||++||+++|+|+|+++.++
T Consensus 138 -~~ke~LIP~~~~~V~~iD~e~k~I~v~~~~~~ 169 (169)
T PRK14591 138 -DNSEYLIPYVKQYIVSEDLNSKKIVVDWEYDY 169 (169)
T ss_pred -CCeEEEEeChhheeeeEEcCCCEEEEecCCCC
Confidence 46899999999999999999999999998764
No 16
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=6.8e-40 Score=318.45 Aligned_cols=163 Identities=26% Similarity=0.475 Sum_probs=142.3
Q ss_pred CeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 005946 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (668)
Q Consensus 76 ~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae 155 (668)
|++.||+|++|||+||||||+|+||+|+ +|.....+|+ +. .++++...|.++ ++.++++|+||+|||+|+
T Consensus 1 ~~v~iG~I~~~hGlkGevkv~~~td~p~-~~~~~~~~~~-----~~---~~~~v~~~~~~~-~~~~lv~f~gi~~~~~Ae 70 (165)
T PRK14592 1 DLICLGVITSPHGIKGHVKIKTFTEDPE-NISAYGKLTD-----GS---NTYKISVVSVIG-ANLVIAKISGINSRTEAE 70 (165)
T ss_pred CEEEEEEEECCCccCEEEEEEECCCCHH-HhcCCceEEE-----CC---EEEEEEEEEEec-CCEEEEEEcCCCCHHHHH
Confidence 6899999999999999999999999999 5655554443 21 245666666653 467899999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 005946 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (668)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~ 235 (668)
+|+|+.||++++++|+|++|||||+|||||+|++ ++|..+|+|++|+++||||+|+|+.. .
T Consensus 71 ~l~g~~l~v~~~~lp~l~e~e~y~~dLiG~~V~~-~~g~~lG~V~~v~~~ga~dvlvI~~~------------------~ 131 (165)
T PRK14592 71 LLRNKKLYVERSKLPNLNEDEFYQSDLIGMEVKL-EDNTIYGYIKKIYNFGSCDIIEISLT------------------S 131 (165)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEHHHcCCcEEEc-CCCCEEEEEEEEccCCCccEEEEEEC------------------C
Confidence 9999999999999999999999999999999996 56788999999999999999999821 1
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCc
Q 005946 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (668)
Q Consensus 236 ~gkevLIPfv~~fV~~VDle~k~I~V~~peGL 267 (668)
+++++||||+++||++||+++|+|+|+||+.+
T Consensus 132 ~~ke~LIP~v~~~V~~IDle~k~I~v~~pe~~ 163 (165)
T PRK14592 132 TKKSTMLPFTKEIFPHINVKERYIILVPPEII 163 (165)
T ss_pred CCcEEEEecchhcccEEECCCCEEEEECcccc
Confidence 46899999999999999999999999999964
No 17
>PRK14593 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=1.2e-39 Score=321.84 Aligned_cols=176 Identities=23% Similarity=0.378 Sum_probs=146.3
Q ss_pred CCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecC---cceeEEEEEEEeeeeCCCceEEEEecCCCCH
Q 005946 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLG---RETIREVKLIDGREHPGQKSWILTFEGIDTV 151 (668)
Q Consensus 75 ~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g---~~~~~~v~v~~~r~~~~~~~~ivkf~gId~r 151 (668)
-+|+.||+|++|||+||||||+++||+|+ +|......|+ .+... ....+++++++.|.+++ +++|+||+||
T Consensus 2 ~~~i~iG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~r~~~~----~v~f~gi~dr 75 (184)
T PRK14593 2 VSMLLVGRIGKSVGLNGGLKLHLESDFPE-CLKKGVKVSV-APLNAFSCASSFKDYVIHSYEHAKN----LLFLETIHTP 75 (184)
T ss_pred ccEEEEEEEECCEeeeEEEEEEECCCCHH-HhccCCEEEE-cccccccccCCceEEEEEEEEeeCC----EEEEcCCCCH
Confidence 46999999999999999999999999999 5665444444 32110 01245789999998742 5899999999
Q ss_pred HHHhcccCCeEEEeCCCCC---CCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccc
Q 005946 152 EQARPLVGSTLLAREGDRP---ELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEA 228 (668)
Q Consensus 152 e~Ae~L~G~~l~v~~~dlp---~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~ 228 (668)
|+|++|+|+.||++++++| +|++|||||+|||||+|++ + |..||+|++|+++||||+|+|+.... .
T Consensus 76 ~~Ae~l~g~~l~i~~~~l~~lp~l~edEyY~~dLiGl~V~~-~-g~~lG~V~~v~~~ga~dvlvV~~~~~---~------ 144 (184)
T PRK14593 76 EKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVE-E-NEILGKVIEIQRISQTDYFMVETTLS---L------ 144 (184)
T ss_pred HHHHHhcCCEEEEEHHHccccCCCCCCcEEeehccCcEEEE-C-CEEeEEEEEEccCCCceEEEEEeccc---c------
Confidence 9999999999999999976 8999999999999999995 4 88999999999999999999984100 0
Q ss_pred cccCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCcccc
Q 005946 229 SSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLEL 270 (668)
Q Consensus 229 ~~~~~~~~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLel 270 (668)
..+..++++||||+++||++||+++++|+|++|+||||-
T Consensus 145 ---~~~~~~ke~LIP~~~~~V~~VDle~k~I~v~~~~glle~ 183 (184)
T PRK14593 145 ---VEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTLLEN 183 (184)
T ss_pred ---ccCCCCcEEEEeChhhhhceEecCCCEEEEeChHHHhhc
Confidence 000124899999999999999999999999999999984
No 18
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=100.00 E-value=3.9e-39 Score=313.12 Aligned_cols=165 Identities=39% Similarity=0.623 Sum_probs=145.9
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 156 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~ 156 (668)
|+.||+|++|||+||||||+++||+|+.+|.. ..+|+... ....+++++++.|.++ +.++++|+||+|||+|++
T Consensus 1 ~v~iG~I~~~hGlkGevkv~~~td~p~~~~~~-~~~~~~~~---~~~~~~~~v~~~~~~~--~~~lv~f~gi~~~~~Ae~ 74 (165)
T TIGR02273 1 LLVVGKIGGPHGIKGEVKVKSFTDFPESLFDY-GPWLILKG---SKQWQTVKVARVRKQN--NKLIVKFEGIDDREAAEA 74 (165)
T ss_pred CEEEEEEECCcccCEEEEEEEcCCCHHHHcCC-CcEEEEcC---CCceEEEEEEEEEEEC--CEEEEEECCCCCHHHHHH
Confidence 58999999999999999999999999976654 44554432 2234578999998874 479999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 005946 157 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236 (668)
Q Consensus 157 L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~ 236 (668)
|+|+.||++++++|+|++||||++|||||+|+| ++|..+|+|++|+++||||+|+|+.. .+
T Consensus 75 L~g~~l~i~~~~lp~l~e~e~y~~dLiG~~V~d-~~~~~lG~V~~v~~~~a~dll~V~~~------------------~~ 135 (165)
T TIGR02273 75 LKGLELFVPREALPELEEDEYYWTDLIGLEVVT-EEGEELGKVVEILETGANDVLVVRSK------------------KG 135 (165)
T ss_pred hcCCEEEEEHHHCCCCCCCCEEhhHhCCcEEEc-CCCcEEEEEEEEecCCCccEEEEEEC------------------CC
Confidence 999999999999999999999999999999996 56778999999999999999999841 14
Q ss_pred CcEEEEecccCccceeecCCCEEEEeCCCC
Q 005946 237 GRLVWIPFVEEIVPIVDMNGREMQITPPKG 266 (668)
Q Consensus 237 gkevLIPfv~~fV~~VDle~k~I~V~~peG 266 (668)
++++||||+++||++||+++++|+|++|+|
T Consensus 136 ~ke~liP~~~~fv~~ID~~~~~I~v~~p~G 165 (165)
T TIGR02273 136 KKEVLIPFVEEIVKEIDLEKKIITVDWPEG 165 (165)
T ss_pred CcEEEEECchhhCCEEeCCCCEEEEECCCC
Confidence 689999999999999999999999999997
No 19
>PRK14594 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=5.4e-39 Score=312.35 Aligned_cols=163 Identities=23% Similarity=0.355 Sum_probs=142.3
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 156 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~ 156 (668)
++.||+|++|||+||||||+|+||+|+..+......|+..+ .+...++++++++|.|+ +.++++|+||+||++|++
T Consensus 1 ~~~iG~I~~~hGlkGevkV~~~td~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~Ae~ 76 (166)
T PRK14594 1 MFVKGIILSSYGINGYAKVKSISNNFCDFINLKNNKLVLKK--SNCSSIEVKVEDVSLKN--NSLLLKFEEFNAPEPIKP 76 (166)
T ss_pred CEEEEEEECceeeeEEEEEEEccCCHHHhhcccCcEEEEec--CCCcEEEEEEEEEEEEC--CEEEEEEcCCCCHHHHHH
Confidence 47899999999999999999999977753333333343322 12235678999999985 469999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 005946 157 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236 (668)
Q Consensus 157 L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~ 236 (668)
|+|+.||++++++|+|++|||||+|||||+|++ + |..+|+|++|+++||||+|+|+. +
T Consensus 77 L~g~~l~v~~~~lp~l~edE~Y~~dLiG~~V~~-~-g~~lG~V~~v~~~ga~dll~V~~--------------------~ 134 (166)
T PRK14594 77 LIGFELWVDDELASKLEEGEYYFGKLIGYAIVN-D-GKELGEVVSFFECLNSVLLEVKV--------------------G 134 (166)
T ss_pred hcCCEEEEEHHHCCCCCCCcEeHhHccCeEEEE-C-CEEEEEEEEEeeCCCcEEEEEEe--------------------C
Confidence 999999999999999999999999999999996 4 78899999999999999999973 4
Q ss_pred CcEEEEecccCccceeecCCCEEEEeCCC
Q 005946 237 GRLVWIPFVEEIVPIVDMNGREMQITPPK 265 (668)
Q Consensus 237 gkevLIPfv~~fV~~VDle~k~I~V~~pe 265 (668)
++++||||+++||++||+++++|+|++|+
T Consensus 135 ~ke~LIPfv~~~V~~VD~~~k~I~v~~~~ 163 (166)
T PRK14594 135 IKLFFVPFLSIYLGDINRELKTIELKVLD 163 (166)
T ss_pred CEEEEEeChHheeeeEEcCCCEEEEEeHH
Confidence 68999999999999999999999999987
No 20
>PRK13829 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=2e-37 Score=300.28 Aligned_cols=161 Identities=24% Similarity=0.378 Sum_probs=137.8
Q ss_pred CeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 005946 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (668)
Q Consensus 76 ~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae 155 (668)
|++.||+|++|||+||||||+ |+|+ ++ ..+.+|+... + .++++++|.|+ +.++++|+||+|||+|+
T Consensus 2 ~~i~iG~I~~~hGikGevkv~---d~p~-~~-~~~~~~~~~~--~-----~~~v~~~r~~~--~~~l~~f~gi~~r~~Ae 67 (162)
T PRK13829 2 RRTEIGRFGGPYGVQGGLKFR---GEPV-VL-DLPRVYVEGL--G-----WRAIERAERVG--PELVLHLAGVTSREGAE 67 (162)
T ss_pred CEEEEEEEeCCeeecEEEEEe---cchH-hc-cCCEEEEcCC--C-----EEEEEEEEEEC--CEEEEEECCCCCHHHHH
Confidence 899999999999999999999 8898 44 4566676421 1 24688888885 46899999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 005946 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (668)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~ 235 (668)
+|+|+.||++++++|+|++|||||+|||||+|+ ++|+.+|+|++|+++||||+|+|+.. ++. ..
T Consensus 68 ~l~g~~l~v~~~~lp~L~e~EyY~~dLiG~~V~--~~g~~lG~V~~v~~~ga~dvlvV~~~--------~~~------~~ 131 (162)
T PRK13829 68 ALVGLRVYADDADLPPLEEGSYYYHELRGLPVY--VDGEPLGEVVDVEDAGAQDLLVIRHV--------GGS------LR 131 (162)
T ss_pred HhcCCEEEEEHHHCCCCCCCCEEehhccCeEEE--ECCEeeEEEEEEecCCCceEEEEEeC--------CCC------Cc
Confidence 999999999999999999999999999999999 57889999999999999999999842 000 00
Q ss_pred CCcEEEEecccCccceeecCCCEEEEeCCCCccc
Q 005946 236 SGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (668)
Q Consensus 236 ~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLe 269 (668)
+.+++||||+++|| |+++++|+|+||+||||
T Consensus 132 ~~k~~LIP~v~~~V---~~~~~~I~v~~peGlld 162 (162)
T PRK13829 132 ARATYFVPLQAPYV---RVELDGITADAIPGLLD 162 (162)
T ss_pred cCceEEEccccceE---EccCCEEEEeCCccccC
Confidence 13799999999986 58999999999999985
No 21
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=100.00 E-value=7.2e-37 Score=296.11 Aligned_cols=156 Identities=29% Similarity=0.466 Sum_probs=138.3
Q ss_pred eeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhcccCCeEEEeCCC
Q 005946 89 LQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLVGSTLLAREGD 168 (668)
Q Consensus 89 lkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~L~G~~l~v~~~d 168 (668)
|||||||+++||+|+ +|.....+|+ . .+ .++++++++|.|+ +.+|++|+||+||++|++|+|+.||+++++
T Consensus 1 ikGevkv~~~td~p~-~~~~~~~~~~-~--~~---~~~~~v~~~r~~~--~~~lv~f~gi~dr~~Ae~L~g~~l~i~~~~ 71 (161)
T PRK13828 1 VRGEVRLKSFTEDPL-AIADYGPLTT-E--DG---ARSFTVALARPAK--DGLVARLKGVATREAAEALRGLELYVPRDR 71 (161)
T ss_pred CcEEEEEEEcCCCHH-HhccCCeEEE-C--CC---CEEEEEEEEEEEC--CEEEEEECCCCCHHHHHHhcCCEEEEEHHH
Confidence 699999999999999 5665555443 2 12 2478999999985 469999999999999999999999999999
Q ss_pred CCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCc
Q 005946 169 RPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEI 248 (668)
Q Consensus 169 lp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~f 248 (668)
+|+|++|||||+|||||+|++ ++|..+|+|++|+++||||+|+|+.. .+++++||||+++|
T Consensus 72 lp~l~e~e~y~~dLiG~~V~d-~~g~~lG~V~~V~~~ga~dvlvV~~~------------------~~~ke~LIP~v~~~ 132 (161)
T PRK13828 72 LPELDDDEFYHADLIGLAAVD-TGGALLGRVKAVHNFGAGDILEIAPP------------------GGGPTLLLPFTRAV 132 (161)
T ss_pred CCCCCCCCEEhhhccCCEEEe-CCCCEEEEEEEEccCCCccEEEEEEC------------------CCCcEEEEeccccc
Confidence 999999999999999999996 56888999999999999999999731 14689999999999
Q ss_pred cceeecCCCEEEEeCCCCcccccC
Q 005946 249 VPIVDMNGREMQITPPKGLLELNL 272 (668)
Q Consensus 249 V~~VDle~k~I~V~~peGLLel~~ 272 (668)
|++||+++++|+|++|+||||+.-
T Consensus 133 V~~VDl~~~~I~v~~peGLl~~~~ 156 (161)
T PRK13828 133 VPTVDLAAGRVVADPPAEIEGDEP 156 (161)
T ss_pred cCeEECCCCEEEEeCCccccCCCC
Confidence 999999999999999999999864
No 22
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=267.84 Aligned_cols=325 Identities=15% Similarity=0.199 Sum_probs=240.2
Q ss_pred hhHHHhhhhHHhHhhhHHHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhh
Q 005946 279 KKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATEL 358 (668)
Q Consensus 279 ~~~~r~~e~~e~~k~~~~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~ 358 (668)
.|-++..+|.++.+.+.. ..++..|. |++. +-..++|+.+-.++..+ +.+++|+++.-. +.-.|
T Consensus 11 ~~~~~~~~F~~~~~~~~~-s~mk~~l~-----~l~~---~~~~~~k~~~~~e~~~F-~~Lf~RyL~~~~-~~~~w----- 74 (498)
T KOG2638|consen 11 GKQESSEEFDSVTKDEAL-SQMKNELD-----KLLS---TSEPEDKNHFKTELSGF-FNLFSRYLREKA-PTIDW----- 74 (498)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHH-----hccc---cCchhhhhcchhhHHHH-HHHHHHHHhccC-Cccch-----
Confidence 344557899998887654 67777776 4333 33345666666666553 245555554211 11122
Q ss_pred hhhhhhhhhcccccCCCCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchh
Q 005946 359 MNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSL 437 (668)
Q Consensus 359 ~~~~~~~~~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl 437 (668)
+.+++.|.+ .+.+ .+++. .. +.+-.+++ |.||+.|+||+||. ||.+||++ |++..+.||
T Consensus 75 ---------dkI~~p~~d-~vv~---y~~i~---~~-~~~~~~L~--KLavlKLNGGlGttmGc~gPKS~-ieVR~g~tF 134 (498)
T KOG2638|consen 75 ---------DKIRPPPED-AVVP---YDDIK---NV-ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKSV-IEVRDGLTF 134 (498)
T ss_pred ---------hhccCCChh-hccc---ccccc---ch-hhHHHhhh--heEEEEecCCcCCccccCCCcee-EEEcCCCch
Confidence 235555555 3221 22232 23 55666675 89999999999999 99999976 889999999
Q ss_pred HHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecc-C
Q 005946 438 ALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM-K 516 (668)
Q Consensus 438 ~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill-~ 516 (668)
++|.. +|+|.+.+ ...+.+|+++|+|+.|+++|.++++++.++. -+|..|.|.+.|.++.++-. .+-. +
T Consensus 135 LDL~V--~QIe~LN~-~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k---v~i~TF~QS~~PRi~~etlL----Pv~~~~ 204 (498)
T KOG2638|consen 135 LDLTV--RQIENLNK-TYNVDVPLVLMNSFNTDEDTQKILKKYAGSK---VDIKTFNQSKYPRIDKETLL----PVPKLE 204 (498)
T ss_pred hHHHH--HHHHHHHh-hcCCCCCEEEecccccchHHHHHHHHhcCCc---eeEEEeccccCCcccccccc----CCCccc
Confidence 98865 55566655 4679999999999999999999999988775 48999999999999988211 1111 2
Q ss_pred CC-CCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCC----
Q 005946 517 SP-WETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSE---- 591 (668)
Q Consensus 517 ~~-~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~---- 591 (668)
.+ ..-+|.|+|||++|.+|+.||+||+|.++|.||++|.|+||++|.+|--+|.+.+.++++..++|++|+ .++
T Consensus 205 ~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~i~~~~ey~MEvTdKT-~aDvKgG 283 (498)
T KOG2638|consen 205 ADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHVINNNIEYLMEVTDKT-RADVKGG 283 (498)
T ss_pred CCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHHhcCCCceEEEecccc-hhhcccc
Confidence 22 346999999999999999999999999999999999999999999999999999999999999999999 332
Q ss_pred -------------------cc---------------cceeeeHHHHHHHhhcc-cCccccccccCCCccccCCCCcceec
Q 005946 592 -------------------ER---------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVEKVDKEFIDVI 636 (668)
Q Consensus 592 -------------------E~---------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kki~~~d~~~~~~~~v~ 636 (668)
|. -|.++.+.-++++.+.. -+|+.|..+|++-+
T Consensus 284 tLi~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLkavKrlve~~~l~meIi~N~kti~~------------ 351 (498)
T KOG2638|consen 284 TLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKAVKKLVEENALNMEIIVNPKTIDR------------ 351 (498)
T ss_pred eEEeecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHHHHHHhhcCcccceeecChhhccC------------
Confidence 21 16889999999987653 37899999999843
Q ss_pred cCCCCeEEEEEEEecccCCCCCCceEEEEe
Q 005946 637 PAAPNSYELRSSIYSCLNACSLDKVCVMEI 666 (668)
Q Consensus 637 P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev 666 (668)
.-|.+.||.-|=++..+-+ +.+.+.|
T Consensus 352 --~~~viQleTa~GaaIk~F~--na~gv~V 377 (498)
T KOG2638|consen 352 --GIEVIQLETAAGAAIKFFD--NAIGVNV 377 (498)
T ss_pred --CceEEEEhhhhhHHHHhCC--Cceeeec
Confidence 1246777777777766654 5555554
No 23
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=99.74 E-value=8.8e-18 Score=145.49 Aligned_cols=84 Identities=39% Similarity=0.576 Sum_probs=69.0
Q ss_pred EEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhccc
Q 005946 79 DVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARPLV 158 (668)
Q Consensus 79 ~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~L~ 158 (668)
+||+|++|||+||||||.++||+|+. |...+.+|+... ....++++++++|.| ++.++++|+||+|||+|++|+
T Consensus 1 ~vG~I~~~hGlkG~vkv~~~td~~~~-~~~~~~~~~~~~---~~~~~~~~v~~~~~~--~~~~i~~~~gi~~r~~Ae~l~ 74 (84)
T PF01782_consen 1 VVGRIGKPHGLKGEVKVRPFTDFPER-LFNLKQVYLEKR---NGEWRPLKVESVRPH--GKSLIVKFEGIDDREAAEALR 74 (84)
T ss_dssp EEEEEEEEETTTTEEEEEE-SSSGGG-GGGSSCEEEE-E---TTEEEEEEEEEEEEE--TTEEEEEETT--SHHHHHTTT
T ss_pred CEEEECCCEecCEEEEEEEecCCHHH-HcCCCeEEEEEc---CCceEEEEEEEEEEe--CCEEEEEEcCCCCHHHHHhhC
Confidence 58999999999999999999999995 555677887632 235678999999988 358999999999999999999
Q ss_pred CCeEEEeCCC
Q 005946 159 GSTLLAREGD 168 (668)
Q Consensus 159 G~~l~v~~~d 168 (668)
|+.|||+++|
T Consensus 75 g~~l~v~r~~ 84 (84)
T PF01782_consen 75 GCELYVPRDD 84 (84)
T ss_dssp T-EEEEEGCG
T ss_pred CCEEEEECCC
Confidence 9999999985
No 24
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=98.59 E-value=2.9e-07 Score=78.23 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=59.8
Q ss_pred CCccchhccCCcEEEEccCCeEeEEEEEe-ccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 005946 174 DGEFYTRDLVGMRVVMKETGELVGTVVNV-FNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252 (668)
Q Consensus 174 edEfY~~DLIG~~V~d~~~G~~lG~V~dV-~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~V 252 (668)
+++||++||+|++|++ .+|+.+|+|.|| ++..++.+..+.... ++. .+..++.++||+. ..+
T Consensus 1 ~~~~~~s~l~g~~V~~-~~G~~iG~V~di~id~~~~~i~~i~v~~-------~~~-----~~~~~~~~~iP~~----~~v 63 (79)
T PF05239_consen 1 MDEFRLSELIGKEVID-RDGEKIGKVKDIVIDPKTGKIVGIVVSS-------GGF-----FGIGGKKVLIPWD----QIV 63 (79)
T ss_dssp -CHGCHHHHTTSEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEEE-------TTS-----TCSSSEEEEEEGG----EEE
T ss_pred CCeEEhHHccCCEEEc-CCCCEEEEEEEEEEeCCCCCEEEEEEcC-------CCc-----cCcCCcEEEEcCe----EeE
Confidence 5899999999999997 559999999999 788788876665421 100 0113589999999 679
Q ss_pred ecCCCEEEEeCCCCcc
Q 005946 253 DMNGREMQITPPKGLL 268 (668)
Q Consensus 253 Dle~k~I~V~~peGLL 268 (668)
+..+++|.|++++++|
T Consensus 64 ~~~~~~i~v~~~~~~~ 79 (79)
T PF05239_consen 64 DIGGDRIIVDPPKEQL 79 (79)
T ss_dssp EECTTEEEESSSTG--
T ss_pred EecCCEEEEcCCCCCC
Confidence 9999999999999876
No 25
>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase. Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.
Probab=96.67 E-value=0.004 Score=64.23 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=51.4
Q ss_pred hccCCcEEEEccCCeEeEEEEEecc---CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCC
Q 005946 180 RDLVGMRVVMKETGELVGTVVNVFN---SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (668)
Q Consensus 180 ~DLIG~~V~d~~~G~~lG~V~dV~~---~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~ 256 (668)
.|++||+|+. .+|+.+|+|+|++- .+.-..|+|++. + .++.+|||+.- +++++
T Consensus 146 ~DprGl~V~g-~DGevvGtV~Dv~vD~~e~~iRYLeVdtg-----------------~-~gkkVLLPi~~-----~rId~ 201 (246)
T cd00226 146 VDPRGLPVVG-ADGEVAGKVTDLWVDRPEQLFRYLEVELA-----------------G-GGRTVLLPMGF-----AKVKS 201 (246)
T ss_pred CCCCCCEeEc-CCCcEeEEEEEEEEcCCcceEEEEEEEcC-----------------C-CCCEEEEEeEE-----EEecC
Confidence 4899999995 57999999999954 457799999851 0 36899999765 34458
Q ss_pred CEEEEe-CCCCcccc
Q 005946 257 REMQIT-PPKGLLEL 270 (668)
Q Consensus 257 k~I~V~-~peGLLel 270 (668)
++|.|+ +..+.++-
T Consensus 202 ~~V~V~~Lt~~Q~~~ 216 (246)
T cd00226 202 DRVKVTAILSEHFAN 216 (246)
T ss_pred CEEEEecccHHHHhc
Confidence 999998 56666653
No 26
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=95.81 E-value=0.00013 Score=81.06 Aligned_cols=140 Identities=21% Similarity=0.097 Sum_probs=111.9
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccc
Q 005946 139 KSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSS 218 (668)
Q Consensus 139 ~~~ivkf~gId~re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~ 218 (668)
..|.+++.+-+++++ -...|..+.-..+..+.|-.|.++..++.++.+-..+.|... ...+++.+|++++.+...+.
T Consensus 70 ~~~~~~~~~~~d~d~-~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~--~~slf~~qae~il~lq~~a~ 146 (477)
T KOG2388|consen 70 KSWPLKERGLDDVDQ-WWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPS--GKSLFQIQAERILKLQELAS 146 (477)
T ss_pred ccceecccCchhhhH-HHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCcc--ccchhhhhHHHHHHHHHHHh
Confidence 467888999999999 888999998888888999999999999999988765556544 56788889999887763221
Q ss_pred cccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEEeCCCCcccccCCcchhhhhHHHhhhhHHhHhhhHH
Q 005946 219 VNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITPPKGLLELNLRTDERSKKERRQLEWKERKKFQKR 296 (668)
Q Consensus 219 ~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~k~I~V~~peGLLel~~~~~~~~~~~~r~~e~~e~~k~~~~ 296 (668)
.-. . ..+...|++++.++..+.+++--. .+.+-||.+-+....++.+.++++.+|| ...-+++
T Consensus 147 ~~~--~----------~~~~I~w~ImtS~~T~e~T~~~f~--~~~~FGl~~~qv~~f~Q~~l~c~~~~gk-~~le~k~ 209 (477)
T KOG2388|consen 147 MAV--S----------DGVDIPWYIMTSAFTHEATLEYFE--SHKYFGLKPEQVTFFQQGKLPCLDLDGK-FILEQKN 209 (477)
T ss_pred hhh--c----------cCCceEEEEecCCCccHHhHhHHh--hcCCCCCChhHeeeeecccccccccCCc-eeccCcc
Confidence 111 1 125667999999999998876544 8899999999999999999999999999 5555544
No 27
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=94.99 E-value=0.18 Score=55.11 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=78.4
Q ss_pred CCeEEEEeccCCCCCC--CCC--CC-cccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEGN--ECD--PH-SVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 405 gkvavvllAGG~GtRg--~~~--pK-~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
+++.+|+||||.|||+ .+. || +++ + .++ .+++... +.+.+.+ .. -++|.|+..-.+.+++||.
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlp--V-~gk~PlIe~~l-----~~L~~~G--i~-~I~iv~~~~~~~~I~~~l~ 69 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLP--F-GGRYRLIDFPL-----SNMVNAG--IR-NVFIFFKNKERQSLFDHLG 69 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccc--c-CCeeeEEEEEh-----hhhhccC--CC-EEEEEeCCCcHHHHHHHHh
Confidence 3678899999999994 222 99 444 3 456 6776654 5555432 21 4677777665569999998
Q ss_pred HCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCC
Q 005946 479 DNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 558 (668)
Q Consensus 479 ~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vD 558 (668)
+...||++..+. .+..+-.. . ..|-|.||.+..... ++.+...+-+++.+.+-|
T Consensus 70 ~~~~~~~~~~~~------~~~~~~~~------------e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnGD 123 (369)
T TIGR02092 70 SGREWDLHRKRD------GLFVFPYN------------D-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNSH 123 (369)
T ss_pred CCCCCCcccccC------cEEEEecc------------C-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECCC
Confidence 877777643211 00000000 0 123344554432222 222322233688888999
Q ss_pred ccccc-cCHHHHHHHHHcCCcEEE
Q 005946 559 PRNAI-GNSMFLGFVKSCGADIGF 581 (668)
Q Consensus 559 N~l~~-~DP~flG~~~~~~~d~~~ 581 (668)
++.-. ... ++-+|.++++++..
T Consensus 124 ~l~~~dl~~-ll~~h~~~~a~~tl 146 (369)
T TIGR02092 124 MVCNIDLKA-VLKYHEETGKDITV 146 (369)
T ss_pred EEEecCHHH-HHHHHHHcCCCEEE
Confidence 84332 333 45777777887643
No 28
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=94.35 E-value=0.74 Score=45.72 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=88.8
Q ss_pred EEEeccCCCCCCC----CCCCcccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
+|+||||.|||.. ..||.+ +++. ++ ++++... +.+.+. +. =.++|+|+.. .+.+.++|.+...|
T Consensus 1 avILAaG~gtRl~plt~~~pK~l-lpv~-g~~pli~~~l-----~~l~~~--gi-~~iivv~~~~-~~~i~~~~~~~~~~ 69 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPA-VPFG-GRYRLIDFPL-----SNMVNS--GI-RNVGVLTQYK-SRSLNDHLGSGKEW 69 (200)
T ss_pred CEEeCCCCCcccchhhcCCccee-eEEC-CeeeeHHHHH-----HHHHHC--CC-CEEEEEeCCC-hHHHHHHHhCCCcc
Confidence 3789999999953 349942 2343 44 7766654 455442 22 2567777765 67888899876556
Q ss_pred CCCCC--cEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccc
Q 005946 484 AFDSK--KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 561 (668)
Q Consensus 484 Gl~~~--qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l 561 (668)
|++.. .+.+.. .. ...-...|-|.|+-...-.. .+.+.+-+++.|.+-|++.
T Consensus 70 ~~~~~~~~~~~~~--------~~-------------~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD~v~ 123 (200)
T cd02508 70 DLDRKNGGLFILP--------PQ-------------QRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGDHIY 123 (200)
T ss_pred cCCCCCCCEEEeC--------cc-------------cCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCCEEE
Confidence 65311 121110 00 00012356687775543322 3433344778899999954
Q ss_pred cc-cCHHHHHHHHHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHh
Q 005946 562 AI-GNSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 607 (668)
Q Consensus 562 ~~-~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 607 (668)
.. .. .++-++.++++++..-+. . -.-.++|+.+++..+.
T Consensus 124 ~~~~~-~~l~~~~~~~~~~t~~~~--~----~~g~yi~~~~~~~~~l 163 (200)
T cd02508 124 NMDYR-EMLDFHIESGADITVVYK--A----SMGIYIFSKDLLIELL 163 (200)
T ss_pred ecCHH-HHHHHHHHcCCCEEEEEh--h----cCEEEEEEHHHHHHHH
Confidence 33 33 456777888888765444 1 1124889988876553
No 29
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=94.25 E-value=0.12 Score=53.18 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=43.0
Q ss_pred eEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 407 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
|++|++|||.|+| |...||-+ +++ .++++++... +.+.+. ..-=-++|++++...+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf-~~l-~Gkpvl~~tl-----~~f~~~--~~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQF-LEL-GGKPVLEYTL-----EAFLAS--PEIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGG-SEE-TTEEHHHHHH-----HHHHTT--TTESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCee-eEE-CCeEeHHHHH-----HHHhcC--CCCCeEEEEecchhHHHHHHhhcC
Confidence 6899999999999 66669953 334 5888876544 555542 111246777787777888888877
No 30
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.85 E-value=0.12 Score=53.23 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=48.9
Q ss_pred eEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 005946 407 KAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (668)
Q Consensus 407 vavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~ 482 (668)
+..|+||.|.|+|+ ...||.+ +++. +++++..+. +++.+.+ .--++|+|+....+...+|+.++++
T Consensus 4 ~kavILAAG~GsRlg~~~PK~L-vev~-gr~ii~~~i-----~~L~~~g---i~e~vvV~~g~~~~lve~~l~~~~~ 70 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKAL-VEVG-GREIIYRTI-----ENLAKAG---ITEFVVVTNGYRADLVEEFLKKYPF 70 (239)
T ss_pred eeEEEEecccccccCCCCCchh-hhcC-CeEeHHHHH-----HHHHHcC---CceEEEEeccchHHHHHHHHhcCCc
Confidence 45789999999995 4359954 4554 888766554 5665532 2357999999999999999998764
No 31
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.78 E-value=0.73 Score=46.45 Aligned_cols=130 Identities=10% Similarity=0.008 Sum_probs=74.3
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
+|+||||.|||+. ..|| ++++ .++.+++... +.+.+.+ . =-++|.|.. ..+.++++|.+...+
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l-----~~l~~~G--i-~~I~iv~~~-~~~~i~~~l~~~~~~ 70 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTL-----EFLALNG--V-EEVFVFCCS-HSDQIKEYIEKSKWS 70 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEE---CCEehHHHHH-----HHHHHCC--C-CeEEEEeCC-CHHHHHHHHhhcccc
Confidence 5889999999943 2389 4443 3567776655 5555532 2 135777775 678899999986655
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA- 562 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~- 562 (668)
++... ...+..+.. ..+.|-|+.++.+...+.+ -+++.+.+-|++.-
T Consensus 71 ~~~~~------~~~i~~~~~-------------------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~ 118 (217)
T cd04197 71 KPKSS------LMIVIIIMS-------------------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNI 118 (217)
T ss_pred ccccC------cceEEEEeC-------------------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeeecc
Confidence 54311 000111110 1234556666655443322 24556777787654
Q ss_pred ccCHHHHHHHHHc-----CCcEEEEE
Q 005946 563 IGNSMFLGFVKSC-----GADIGFQI 583 (668)
Q Consensus 563 ~~DP~flG~~~~~-----~~d~~~kv 583 (668)
.... ++-+|... ++++.+-+
T Consensus 119 dl~~-~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 119 DLKE-ILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred CHHH-HHHHHHHhhccccCceEEEEE
Confidence 2333 56788773 77776543
No 32
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=93.78 E-value=1 Score=46.80 Aligned_cols=146 Identities=10% Similarity=0.131 Sum_probs=74.2
Q ss_pred EEEeccCCCCCC-C-C--CCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGN-E-C--DPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg-~-~--~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
+|++|||.|||. . + -|| ++++ .++++++... +.+.+. .|.-+++......+.+.++|.+...+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l-----~~l~~~----gi~~i~iv~~~~~~~i~~~~~~~~~~ 69 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIM-----KIYSHH----GINDFIICCGYKGYVIKEYFANYFLH 69 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHH-----HHHHHC----CCCEEEEEcCCCHHHHHHHHHhhhhc
Confidence 477899999994 2 2 399 4443 4577664433 444432 23333444445678889999764333
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~ 563 (668)
|.+ -++. ++++.+...... .+. ..+-.. ....|-|.||-+.+... .+ +-+++.+.+-|++.-.
T Consensus 70 ~~~-~~~~-~~~~~~~~~~~~--~~~-~~~~~~----~~~~~~gt~~al~~~~~-----~i---~~e~flv~~gD~i~~~ 132 (254)
T TIGR02623 70 MSD-VTFH-MADNTMEVHHKR--VEP-WRVTLV----DTGESTQTGGRLKRVRE-----YL---DDEAFCFTYGDGVADI 132 (254)
T ss_pred ccC-eeEE-eccccccccccc--CCc-cceeee----ecCCcCCcHHHHHHHHH-----hc---CCCeEEEEeCCeEecC
Confidence 221 1222 233333332211 000 001000 01246788776543332 12 1356678888885432
Q ss_pred -cCHHHHHHHHHcCCcEEEEEe
Q 005946 564 -GNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 564 -~DP~flG~~~~~~~d~~~kvV 584 (668)
.. -++-++...++++...++
T Consensus 133 dl~-~~~~~h~~~~~d~tl~~~ 153 (254)
T TIGR02623 133 DIK-ALIAFHRKHGKKATVTAV 153 (254)
T ss_pred CHH-HHHHHHHHcCCCEEEEEe
Confidence 32 345677788888765444
No 33
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=93.69 E-value=1.3 Score=42.81 Aligned_cols=135 Identities=10% Similarity=0.105 Sum_probs=74.4
Q ss_pred EEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCC
Q 005946 408 AMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFD 486 (668)
Q Consensus 408 avvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~ 486 (668)
+.|+||||.|+|.+. +|. +++ .++++++... +++.+. .-+++|.|+..... + .. ++.
T Consensus 2 ~~iILAgG~s~Rmg~-~K~ll~~---~g~~ll~~~i-----~~l~~~----~~~iivv~~~~~~~----~-~~---~~~- 59 (181)
T cd02503 2 TGVILAGGKSRRMGG-DKALLEL---GGKPLLEHVL-----ERLKPL----VDEVVISANRDQER----Y-AL---LGV- 59 (181)
T ss_pred cEEEECCCccccCCC-CceeeEE---CCEEHHHHHH-----HHHHhh----cCEEEEECCCChHH----H-hh---cCC-
Confidence 579999999999433 884 433 4688877655 444432 12567777765443 1 11 111
Q ss_pred CCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCC-chHhHHHhhCchHHHHHHcCceEEEEEcCCccccccC
Q 005946 487 SKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGS-GGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 565 (668)
Q Consensus 487 ~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~-Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~D 565 (668)
.+ +..+ .+. .|- ++++.+|... ..+++.|...|.++. +
T Consensus 60 ----~~--------v~~~-------------~~~-----~G~~~si~~~l~~~---------~~~~vlv~~~D~P~i--~ 98 (181)
T cd02503 60 ----PV--------IPDE-------------PPG-----KGPLAGILAALRAA---------PADWVLVLACDMPFL--P 98 (181)
T ss_pred ----cE--------eeCC-------------CCC-----CCCHHHHHHHHHhc---------CCCeEEEEeCCcCCC--C
Confidence 11 1111 000 011 4666666532 368999999999988 5
Q ss_pred HHHHHHHHH---cCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 566 SMFLGFVKS---CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 566 P~flG~~~~---~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
|-.+-...+ ++.++.. +......+.+--+|+.+++..+..
T Consensus 99 ~~~i~~l~~~~~~~~~~~~---~~~~g~~~Pl~~~~~~~~~~~l~~ 141 (181)
T cd02503 99 PELLERLLAAAEEGADAVV---PKSGGRLQPLHALYHKSLLPALEE 141 (181)
T ss_pred HHHHHHHHHhhccCCCEEE---EeeCCceeeEEEEEeHhHHHHHHH
Confidence 655555544 3444433 322111233334799988887754
No 34
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.32 E-value=0.28 Score=49.72 Aligned_cols=66 Identities=9% Similarity=0.135 Sum_probs=44.4
Q ss_pred EEEEeccCCCCCCC----CCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 005946 408 AMVLVVHNSEEGNE----CDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (668)
Q Consensus 408 avvllAGG~GtRg~----~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~ 482 (668)
.+|++|||.|||.. ..||. +++ .++++++... +.+.+.+ . =.++|+|+. ..+.+++++++...
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l-----~~l~~~~--~-~~i~vv~~~-~~~~~~~~~~~~~~ 69 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAI-----EDLREAG--I-EDIGIVVGP-TGEEIKEALGDGSR 69 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEE---CCcchHHHHH-----HHHHHCC--C-CEEEEEcCC-CHHHHHHHhcchhh
Confidence 57899999999942 34894 443 3678877654 4554432 2 146778877 77888899887555
Q ss_pred CCC
Q 005946 483 FAF 485 (668)
Q Consensus 483 FGl 485 (668)
+++
T Consensus 70 ~~~ 72 (236)
T cd04189 70 FGV 72 (236)
T ss_pred cCC
Confidence 664
No 35
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=93.30 E-value=0.28 Score=50.02 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=41.7
Q ss_pred eEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 407 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+++|+||||.|+| |+..||.+ +++ .++++++... +++.+. ..--.++|.|++.......+++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l-~~l-~gkpll~~~i-----~~~~~~--~~~~~ivVv~~~~~~~~~~~~~~~ 67 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMW-LDL-VGEPIFIHAL-----RPFLAD--NRCSKIIIVTQAQERKHVQDLMKQ 67 (230)
T ss_pred eEEEEECCeeccccCCCCCcce-eEE-CCeEHHHHHH-----HHHHcC--CCCCEEEEEeChhhHHHHHHHHHh
Confidence 7899999999999 65568943 233 4788876544 454432 112257777877666666666654
No 36
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=92.96 E-value=1.5 Score=48.07 Aligned_cols=71 Identities=4% Similarity=-0.049 Sum_probs=47.8
Q ss_pred CCeEEEEeccCCCCCCC----CCCCcccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 405 gkvavvllAGG~GtRg~----~~pK~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+++-+|+||||.|||+. ..||.+ +++ .++ ++++... +.+.+.+ .. -++|+|.. ..+.++++|.+
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~l-lpv-~gk~pli~~~l-----~~l~~~G--i~-~i~iv~~~-~~~~i~~~~~~ 70 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPA-VPF-GGKYRIIDFTL-----SNCANSG--ID-TVGVLTQY-QPLELNNHIGI 70 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccce-eee-CCceeehhHHH-----HHHHhCC--CC-EEEEEecC-CHHHHHHHHhC
Confidence 46889999999999943 239942 233 355 6777665 5555532 22 46677764 67889999987
Q ss_pred CCCCCCC
Q 005946 480 NDHFAFD 486 (668)
Q Consensus 480 n~~FGl~ 486 (668)
...|+++
T Consensus 71 ~~~~~~~ 77 (380)
T PRK05293 71 GSPWDLD 77 (380)
T ss_pred CCccccc
Confidence 7677764
No 37
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=92.78 E-value=1.7 Score=48.34 Aligned_cols=141 Identities=10% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCeEEEEeccCCCCCCC---CC-CC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEGNE---CD-PH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 405 gkvavvllAGG~GtRg~---~~-pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.++.+|+||||.|||+. .. || ++| +.....+.++.. +.+.+.+ . =-++|.|. ...+.+.++|.+
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llP--v~gk~plI~~~L-----~~l~~~G--i-~~i~iv~~-~~~~~i~~~~~~ 72 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVP--FGGSYRLIDFVL-----SNLVNSG--Y-LRIYVLTQ-YKSHSLDRHISQ 72 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCccccee--eCCcceEhHHHH-----HHHHHCC--C-CEEEEEec-cCHHHHHHHHHh
Confidence 47889999999999942 33 99 444 433337766654 4554432 1 13456665 568889999974
Q ss_pred CCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCc
Q 005946 480 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 559 (668)
Q Consensus 480 n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN 559 (668)
. +++..-.+.++.. .|. .+ .+ -...|-|.||-+... ++.+....-+++.+.+-|+
T Consensus 73 ~--~~~~~~~~~~~~~--~~~--~~------------~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv~~gD~ 127 (407)
T PRK00844 73 T--WRLSGLLGNYITP--VPA--QQ------------RL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVVFGADH 127 (407)
T ss_pred C--cCccccCCCeEEE--CCc--cc------------CC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEEecCCE
Confidence 2 3332111222110 010 00 00 012255777654322 2234333447888888888
Q ss_pred cccc-cCHHHHHHHHHcCCcEEEE
Q 005946 560 RNAI-GNSMFLGFVKSCGADIGFQ 582 (668)
Q Consensus 560 ~l~~-~DP~flG~~~~~~~d~~~k 582 (668)
+.-. .. -++-+|...++++.+-
T Consensus 128 v~~~dl~-~l~~~h~~~~~~~ti~ 150 (407)
T PRK00844 128 VYRMDPR-QMVDFHIESGAGVTVA 150 (407)
T ss_pred EEcCCHH-HHHHHHHhcCCcEEEE
Confidence 5432 32 3567888888875443
No 38
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=92.72 E-value=1.1 Score=50.32 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=80.1
Q ss_pred CeEEEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 406 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
++.+|+||||.|||+. ..||.+ +++..++.+.++.. +.+.+.+ .. -++|.|. ...+.+.++|++.-
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~l-lpv~g~~plId~~L-----~~l~~~G--i~-~i~iv~~-~~~~~i~~~l~~~~ 72 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPA-VPIGGNYRLIDIPM-----SNCINSG--IN-KIYVLTQ-FNSASLNRHLSRAY 72 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccc-eEeCCcceEehHHH-----HHHHhCC--CC-EEEEEec-cCHHHHHHHHhccC
Confidence 6788999999999952 239942 34444457776655 5555432 11 2456665 46788999998532
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccc
Q 005946 482 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 561 (668)
Q Consensus 482 ~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l 561 (668)
.|+.... +.++.+..+... .+ ..-...|-|.||-+..... .+++...++-+++.+.+-|++.
T Consensus 73 ~~~~~~~----~~~~~~~i~~~~-----------q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~gD~v~ 134 (436)
T PLN02241 73 NFGNGGN----FGDGFVEVLAAT-----------QT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSGDHLY 134 (436)
T ss_pred CCCCCcc----cCCCCEEEcCCc-----------cc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecCCeEE
Confidence 2442111 111111111100 00 0001257898876654332 2332222235789999999864
Q ss_pred cc-cCHHHHHHHHHcCCcEEE
Q 005946 562 AI-GNSMFLGFVKSCGADIGF 581 (668)
Q Consensus 562 ~~-~DP~flG~~~~~~~d~~~ 581 (668)
-. ... ++-+|.++++++..
T Consensus 135 ~~dl~~-ll~~h~~~~a~~ti 154 (436)
T PLN02241 135 RMDYMD-FVQKHRESGADITI 154 (436)
T ss_pred ccCHHH-HHHHHHHcCCCEEE
Confidence 32 333 46788888888654
No 39
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=92.58 E-value=0.25 Score=52.09 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=44.6
Q ss_pred EEEEeccCCCCCCC-----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 408 AMVLVVHNSEEGNE-----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 408 avvllAGG~GtRg~-----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
-+|+||||.|||+. ..||-+ +++..++++++... +++..++ ..=.++|+|+....+.+++++.+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~l-l~l~g~~~li~~~l-----~~l~~~~--~~~~i~vvt~~~~~~~v~~~l~~ 70 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQF-LKLFGDKSLLQQTL-----DRLKGLV--PPDRILVVTNEEYRFLVREQLPE 70 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceE-eEcCCCCcHHHHHH-----HHHhcCC--CCCcEEEEechHHHHHHHHHHhh
Confidence 36899999999952 349942 34555699988766 6665432 11278899998777778888865
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=92.42 E-value=0.4 Score=48.13 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=40.9
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
.|+||||.|||.. ..|| ++++ .++++++... +.+.+.+ . -.++|.| ....+.+.+++.. .++
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l-----~~l~~~g--i-~~i~iv~-~~~~~~i~~~~~~-~~~ 68 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHAL-----DRLAAAG--I-RRIVVNT-HHLADQIEAHLGD-SRF 68 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHH-----HHHHHCC--C-CEEEEEc-cCCHHHHHHHHhc-ccC
Confidence 4889999999943 2388 4443 3668877665 5555532 1 1234545 5678889999876 445
Q ss_pred CC
Q 005946 484 AF 485 (668)
Q Consensus 484 Gl 485 (668)
|+
T Consensus 69 ~~ 70 (221)
T cd06422 69 GL 70 (221)
T ss_pred Cc
Confidence 54
No 41
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.41 E-value=0.27 Score=52.89 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=55.7
Q ss_pred eEEEEeccCCCCCC---CCC--CCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGN---ECD--PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg---~~~--pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+.-|+||||.|||+ +-. ||-+ +.+..++|+||-.. +|+..+.. .-.+++.|+..-..-+++=|.+-+
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQF-l~L~~~~Sllq~T~-----~R~~~l~~--~~~~~vVtne~~~f~v~eql~e~~ 73 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQF-LKLFGDLSLLQQTV-----KRLAFLGD--IEEPLVVTNEKYRFIVKEQLPEID 73 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccc-eeeCCCCcHHHHHH-----HHHhhcCC--ccCeEEEeCHHHHHHHHHHHhhhh
Confidence 35689999999995 322 9953 56667999988776 66655432 235678899888888888887622
Q ss_pred CCCCCCCcEEEE---ecCCccccc
Q 005946 482 HFAFDSKKVWFL---EEEKLPIVS 502 (668)
Q Consensus 482 ~FGl~~~qV~~f---~Q~~lP~v~ 502 (668)
.=.. .. .++ .-++-||+-
T Consensus 74 ~~~~--~~-illEP~gRnTApAIA 94 (333)
T COG0836 74 IENA--AG-IILEPEGRNTAPAIA 94 (333)
T ss_pred hccc--cc-eEeccCCCCcHHHHH
Confidence 1111 12 333 446788873
No 42
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.31 E-value=2.3 Score=47.19 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=39.9
Q ss_pred CeEEEEeccCCCCCC-CCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN-ECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.|||. ...|| ++++ -++++++... +.+.+. . -..+|+++. ..+.+++++.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i-----~~l~~~---~-~~i~Ivv~~-~~~~i~~~~~~ 64 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYIL-----KEAFAI---S-DDVHVVLHH-QKERIKEAVLE 64 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHH-----HHHHHc---C-CcEEEEECC-CHHHHHHHHHh
Confidence 356899999999994 44599 4443 4688766554 444432 1 246677765 46778888875
No 43
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=92.19 E-value=1.6 Score=41.25 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=79.2
Q ss_pred EEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCC
Q 005946 409 MVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDS 487 (668)
Q Consensus 409 vvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~ 487 (668)
+|+||||.|+| |. ||.+ +++ .++++++... +++.+.+ .=+++|++.. +.+.+++... +
T Consensus 1 ~vILa~G~s~Rmg~--~K~l-~~i-~g~~li~~~l-----~~l~~~~---~~~Ivvv~~~---~~~~~~~~~~---~--- 59 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKAL-LPI-GGKPLIERVL-----EALREAG---VDDIVVVTGE---EEIYEYLERY---G--- 59 (160)
T ss_dssp EEEEESSSCGGGTS--CGGG-SEE-TTEEHHHHHH-----HHHHHHT---ESEEEEEEST---HHHHHHHTTT---T---
T ss_pred CEEECCcCcccCCC--Cccc-eeE-CCccHHHHHH-----HHhhccC---CceEEEecCh---HHHHHHHhcc---C---
Confidence 58999999999 54 8853 344 7889877655 5554432 1267787776 3444444221 1
Q ss_pred CcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHc-CceEEEEEcCCcccc-c-c
Q 005946 488 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDEL-GVEYIQICTANPRNA-I-G 564 (668)
Q Consensus 488 ~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~-Gi~yi~v~~vDN~l~-~-~ 564 (668)
+ +++.+ |+-..|...+|.. -+..- +.+++.+..+|-++. . .
T Consensus 60 ----------~-------------~~v~~--------~~~~~G~~~sl~~-----a~~~~~~~~~vlv~~~D~p~~~~~~ 103 (160)
T PF12804_consen 60 ----------I-------------KVVVD--------PEPGQGPLASLLA-----ALSQLPSSEPVLVLPCDQPFLSPEL 103 (160)
T ss_dssp ----------S-------------EEEE---------STSSCSHHHHHHH-----HHHTSTTSSEEEEEETTETTS-HHH
T ss_pred ----------c-------------eEEEe--------ccccCChHHHHHH-----HHHhcccCCCcEEEeCCccccCHHH
Confidence 1 22211 1111233333322 22222 789999999999887 2 3
Q ss_pred CHHHHHHHHHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 565 NSMFLGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 565 DP~flG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
-..++..+...+.++..-+.... ..+.+ +|+.+.+..+..
T Consensus 104 l~~l~~~~~~~~~~i~~~~~~~~--~~~P~--~~~~~~~~~l~~ 143 (160)
T PF12804_consen 104 LRRLLEALEKSPADIVVPVFRGG--RGHPL--IYSRSALPELEA 143 (160)
T ss_dssp HHHHHHHHHHTTTSEEEEEETTE--EEEEE--EEEGGGHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEEECCc--cceeE--EEeHHHHHHHHH
Confidence 34455565666888877555433 23444 677776666543
No 44
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=92.07 E-value=1.6 Score=43.89 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=73.4
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
+|+||||.|+|.. ..|| ++++ .++++++... +.+.+.+ . =.++|.++....+.+++++++.. .
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l-----~~l~~~g--~-~~iivv~~~~~~~~i~~~l~~~~-~ 70 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPL-----DWLEKAG--F-EDVIVVVPEEEQAEISTYLRSFP-L 70 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHH-----HHHHHCC--C-CeEEEEECHHHHHHHHHHHHhcc-c
Confidence 4679999999942 3489 4443 3678877654 5555422 1 24667777665667888887532 0
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~ 563 (668)
..... ..+... ....+.|.|+........ + -+.+.+.+-|.+...
T Consensus 71 ~~~~~----------------------~~~~~~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~~ 115 (214)
T cd04198 71 NLKQK----------------------LDEVTI----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITDL 115 (214)
T ss_pred ccCcc----------------------eeEEEe----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcccccc
Confidence 00000 011110 013467888877766552 1 244667777754432
Q ss_pred -cCHHHHHHHHHcCCcEEEEEee
Q 005946 564 -GNSMFLGFVKSCGADIGFQISE 585 (668)
Q Consensus 564 -~DP~flG~~~~~~~d~~~kvV~ 585 (668)
... ++-.+...++.+.+-+.+
T Consensus 116 ~l~~-~l~~h~~~~~~~t~~~~~ 137 (214)
T cd04198 116 PLIE-LVDLHRSHDASLTVLLYP 137 (214)
T ss_pred CHHH-HHHHHhccCCcEEEEEec
Confidence 433 456777788888775544
No 45
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=91.84 E-value=0.57 Score=50.08 Aligned_cols=76 Identities=5% Similarity=0.121 Sum_probs=48.3
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
.+-.|+||||.|||+. ..|| ++| + -+|.+++... +.+...+ .. -++|++.....+..+++|.+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llp--v-~gkPmI~~~l-----~~l~~aG--i~-~I~ii~~~~~~~~~~~~l~~g 71 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLP--I-YDKPMIYYPL-----STLMLAG--IR-DILIISTPQDTPRFQQLLGDG 71 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeE--E-CCEEHHHHHH-----HHHHHCC--CC-EEEEEecCCchHHHHHHHcCc
Confidence 3678999999999953 2389 444 3 4567766554 5555432 22 345555555556788999877
Q ss_pred CCCCCCCCcEEEEec
Q 005946 481 DHFAFDSKKVWFLEE 495 (668)
Q Consensus 481 ~~FGl~~~qV~~f~Q 495 (668)
..||+ ++.+..|
T Consensus 72 ~~~g~---~i~y~~q 83 (292)
T PRK15480 72 SQWGL---NLQYKVQ 83 (292)
T ss_pred cccCc---eeEEEEC
Confidence 77886 4444444
No 46
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=91.77 E-value=2.4 Score=42.55 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=37.9
Q ss_pred EEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+|+||||.||| +...||.+ +++ .++++++... +.+.+.+ . -.++|.|+.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l-~~v-~gkpli~~~i-----~~l~~~~--i-~~i~iv~~~~-~~~i~~~~~~ 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVL-HPL-AGKPMLEHVL-----DAARALG--P-DRIVVVVGHG-AEQVKKALAN 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhc-cee-CCccHHHHHH-----HHHHhCC--C-CeEEEEECCC-HHHHHHHhCC
Confidence 47899999999 44459943 233 4678876554 5554432 2 2566777655 6777777754
No 47
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=91.73 E-value=0.25 Score=50.24 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=69.0
Q ss_pred EEEeccCCCCCC---C-CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGN---E-CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg---~-~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
.|+||||.|||+ . ..|| +++ +..++++++... +.+.+.+ .. -+++++.....+.+.++|.+...+
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~--i~g~~pli~~~l-----~~l~~~g--~~-~ii~V~~~~~~~~i~~~~~~~~~~ 71 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLP--IGGKYPLIDYVL-----ENLANAG--IK-EIIVVVNGYKEEQIEEHLGSGYKF 71 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSE--ETTEEEHHHHHH-----HHHHHTT--CS-EEEEEEETTTHHHHHHHHTTSGGG
T ss_pred EEEECCCCCccCchhhhccccccce--ecCCCcchhhhh-----hhhcccC--Cc-eEEEEEeecccccccccccccccc
Confidence 366799999993 2 2388 443 334438876654 5665533 22 235555656678899999987656
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcC-ceEEEEEcCCcccc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELG-VEYIQICTANPRNA 562 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~G-i~yi~v~~vDN~l~ 562 (668)
++ +|.+..|. .|.|.|+-..... +.+.... -+++.+.+.|++.-
T Consensus 72 ~~---~i~~i~~~---------------------------~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~i~~ 116 (248)
T PF00483_consen 72 GV---KIEYIVQP---------------------------EPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDIIFD 116 (248)
T ss_dssp TE---EEEEEEES---------------------------SSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEEEES
T ss_pred cc---cceeeecc---------------------------cccchhHHHHHHH-----HHhhhccccceEEEEecccccc
Confidence 62 33322221 1115555444332 2222222 24677777777555
Q ss_pred ccCHHHHHHHHHcCCcE
Q 005946 563 IGNSMFLGFVKSCGADI 579 (668)
Q Consensus 563 ~~DP~flG~~~~~~~d~ 579 (668)
..-.-++-.+...++++
T Consensus 117 ~~~~~~l~~~~~~~~~~ 133 (248)
T PF00483_consen 117 DDLQDMLEFHRESNADG 133 (248)
T ss_dssp TTHHHHHHHHHHHSSCE
T ss_pred chhhhHHHhhhcccccc
Confidence 32244667777777743
No 48
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=91.72 E-value=0.63 Score=47.51 Aligned_cols=67 Identities=6% Similarity=0.115 Sum_probs=44.3
Q ss_pred EEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCC
Q 005946 408 AMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDH 482 (668)
Q Consensus 408 avvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~ 482 (668)
-+|+||||.|||.. ..|| ++++. ++++++... +.+.+.+ . -.++|+++....+.+.++|.....
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l-----~~l~~~g--i-~~i~vv~~~~~~~~~~~~l~~~~~ 70 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPL-----STLMLAG--I-REILIISTPEDLPLFKELLGDGSD 70 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHH-----HHHHHCC--C-CEEEEEeCcchHHHHHHHHhcccc
Confidence 36899999999942 3399 44443 788877655 4554432 2 256677776666788888887555
Q ss_pred CCC
Q 005946 483 FAF 485 (668)
Q Consensus 483 FGl 485 (668)
+|+
T Consensus 71 ~~~ 73 (240)
T cd02538 71 LGI 73 (240)
T ss_pred cCc
Confidence 664
No 49
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=91.69 E-value=2 Score=48.23 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=75.8
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.|||+. .-|| +++ + -++ +++++.. +.+.+.+ . =.++|.|+. ..+.++++|.+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llp--i-~gk~plI~~~L-----~~l~~~G--i-~~vivv~~~-~~~~i~~~l~~ 70 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVP--L-AGKYRLIDIPI-----SNCINSG--I-NKIYVLTQF-NSASLNRHISQ 70 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeE--E-CCeeEEeHHHH-----HHHHHCC--C-CEEEEEecC-CHHHHHHHHhc
Confidence 6889999999999953 3499 444 3 345 7776655 4554432 2 146677774 77889999976
Q ss_pred CCCCCC-CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCC
Q 005946 480 NDHFAF-DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 558 (668)
Q Consensus 480 n~~FGl-~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vD 558 (668)
+..|+. ...-+. .+... +.. .. ...+-|.||-+.... +.+....-+++.|.+-|
T Consensus 71 ~~~~~~~~~g~~~--------i~~~~-------~~~-~~----~~~~lGTa~al~~a~-----~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 71 TYNFDGFSGGFVE--------VLAAQ-------QTP-EN----PSWFQGTADAVRKYL-----WHFQEWDVDEYLILSGD 125 (429)
T ss_pred CcCccccCCCEEE--------EeCCc-------ccC-CC----CccccCcHHHHHHHH-----HHHHhcCCCEEEEecCC
Confidence 422211 001011 11100 000 00 011257776554332 23433334678888889
Q ss_pred ccccc-cCHHHHHHHHHcCCcEEEE
Q 005946 559 PRNAI-GNSMFLGFVKSCGADIGFQ 582 (668)
Q Consensus 559 N~l~~-~DP~flG~~~~~~~d~~~k 582 (668)
++.-. .. .++-++...++++.+-
T Consensus 126 ~l~~~dl~-~ll~~h~~~~a~~tl~ 149 (429)
T PRK02862 126 QLYRMDYR-LFVQHHRETGADITLA 149 (429)
T ss_pred EEEeCCHH-HHHHHHHHcCCCEEEE
Confidence 85432 22 3567777888876443
No 50
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=91.55 E-value=0.47 Score=49.66 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 405 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
.++++|+||||.|+| |...||.+ +++ .++++++... +.+.+.. .+ =.++|.++....+..+..++
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKql-l~l-~Gkpll~~tl-----~~~~~~~-~i-~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQY-LPL-LGQPIALYSL-----YTFARMP-EV-KEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred CceEEEEEcccccccCCCCCCcce-eEE-CCeEHHHHHH-----HHHHhCC-CC-CeEEEEeCHHHHHHHHHHHH
Confidence 368999999999999 65569953 233 4788876544 5554421 11 24666776655555555554
No 51
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=91.39 E-value=2.5 Score=41.80 Aligned_cols=126 Identities=17% Similarity=0.288 Sum_probs=71.5
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
+|++|||.|||.. ..|| ++++ .++++++... +.+.+.+ . -.++|.|.. ..+.+++++.+...+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l-----~~l~~~g--~-~~i~vv~~~-~~~~i~~~~~~~~~~ 68 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYII-----ERLARAG--I-DEIILVVGY-LGEQIEEYFGDGSKF 68 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHH-----HHHHHCC--C-CEEEEEecc-CHHHHHHHHcChhhc
Confidence 3789999999932 2388 4443 4678877665 5555432 1 245677765 456788888764434
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~ 563 (668)
|. .|.+..| ..+.|.|+-+.+... .+ .-+++.|.+-|++.-.
T Consensus 69 ~~---~i~~~~~---------------------------~~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~~~ 110 (217)
T cd04181 69 GV---NIEYVVQ---------------------------EEPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLTDL 110 (217)
T ss_pred Cc---eEEEEeC---------------------------CCCCccHHHHHHhhh-----hc---CCCCEEEEECCeecCc
Confidence 42 2222111 013555544332221 22 3567888888886443
Q ss_pred -cCHHHHHHHHHcCCcEEEEEee
Q 005946 564 -GNSMFLGFVKSCGADIGFQISE 585 (668)
Q Consensus 564 -~DP~flG~~~~~~~d~~~kvV~ 585 (668)
... ++-++...++++..-+.+
T Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~ 132 (217)
T cd04181 111 DLSE-LLRFHREKGADATIAVKE 132 (217)
T ss_pred CHHH-HHHHHHhcCCCEEEEEEE
Confidence 333 456777778887665544
No 52
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=91.06 E-value=2.5 Score=43.67 Aligned_cols=142 Identities=12% Similarity=0.136 Sum_probs=75.0
Q ss_pred EEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
+|++|||.|||.. ..||.+ +++ .++.+++... +.+.+.+ . =.++|.++ ...+.+++|+.+...||
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~l-lpv-~~~p~i~~~~-----~~~~~~g--i-~~i~iv~~-~~~~~i~~~~~~~~~~~ 69 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPM-VEI-GGRPILWHIM-----KIYSHYG--H-NDFILCLG-YKGHVIKEYFLNYFLHN 69 (253)
T ss_pred CEEEecCCccccCCccCCCCceE-EEE-CCEEHHHHHH-----HHHHhCC--C-ceEEEECC-CCHHHHHHHHHhhhhhc
Confidence 4789999999942 239942 233 3566665433 4444422 1 13555555 46788999998755455
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceecc--CCCCCcc----cccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCC
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILM--KSPWETL----QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 558 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill--~~~~~i~----~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vD 558 (668)
. ++.+-.|..- -+++- .++|.+. ..|.|+||-+....+ .+ ..+ +++.+.+-|
T Consensus 70 ~---~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~-~~~-~~~lv~~gD 127 (253)
T cd02524 70 S---DVTIDLGTNR------------IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL-GDD-ETFMLTYGD 127 (253)
T ss_pred C---ceeEeecccc------------eeeecccccccceeecccCcccccHHHHHHHHH-----hc-CCC-CeEEEEcCC
Confidence 3 2222111000 00000 0122211 235667654332221 12 111 789999999
Q ss_pred ccccc-cCHHHHHHHHHcCCcEEEEEe
Q 005946 559 PRNAI-GNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 559 N~l~~-~DP~flG~~~~~~~d~~~kvV 584 (668)
++.-. ... ++=++...++++...++
T Consensus 128 ~i~~~dl~~-ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 128 GVSDVNINA-LIEFHRSHGKLATVTAV 153 (253)
T ss_pred EEECCCHHH-HHHHHHHcCCCEEEEEe
Confidence 87653 544 45677888888876554
No 53
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=90.97 E-value=0.73 Score=49.07 Aligned_cols=73 Identities=5% Similarity=0.101 Sum_probs=46.8
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
.|+||||.|||+. ..|| ++| + -++.+.+... +.+...+ . =.++|+|.....+..+++|.....|
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llp--v-~gkPmI~~~L-----~~l~~aG--i-~~I~iv~~~~~~~~~~~~lg~g~~~ 70 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLP--I-YDKPMIYYPL-----STLMLAG--I-RDILIISTPQDTPRFQQLLGDGSQW 70 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeE--E-CCEEhHHHHH-----HHHHHCC--C-CEEEEEecCCcHHHHHHHhcccccc
Confidence 4789999999953 2399 444 3 3567766554 4444432 1 1455667666777888899876677
Q ss_pred CCCCCcEEEEec
Q 005946 484 AFDSKKVWFLEE 495 (668)
Q Consensus 484 Gl~~~qV~~f~Q 495 (668)
|+ ++.+..|
T Consensus 71 g~---~i~~~~q 79 (286)
T TIGR01207 71 GV---NLSYAVQ 79 (286)
T ss_pred Cc---eEEEEEc
Confidence 86 4555545
No 54
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=90.82 E-value=0.49 Score=47.02 Aligned_cols=60 Identities=5% Similarity=0.032 Sum_probs=39.7
Q ss_pred EEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 408 AMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 408 avvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
..++||||.|||.+..||. +++ .++++++... +.+... .+ =.+++.||. +.+.++.++++
T Consensus 2 ~aIILAgG~gsRmg~~~K~Ll~i---~GkplI~~vi-----~~l~~~--~i-~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPLIEV---CGRCLIDHVL-----SPLLKS--KV-NNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCCCCceEeEE---CCEEHHHHHH-----HHHHhC--CC-CEEEEEeCC-CHHHHHHHHhh
Confidence 5689999999995447884 433 4788877665 455432 11 256777776 45678888764
No 55
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=90.80 E-value=0.71 Score=50.77 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=48.4
Q ss_pred eEEEEeccCCCCCC---CC-CCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGN---EC-DPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg---~~-~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+-.|+||||.|||+ -. -|| ++++. ++.+++.+. +.+.+.+ +-=++++-....+.++++|.+..
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l-----~~L~~~G----v~eivi~~~y~~~~i~~~~~d~~ 69 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVL-----EALAAAG----VEEIVLVVGYLGEQIEEYFGDGE 69 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHH-----HHHHHCC----CcEEEEEeccchHHHHHHHhccc
Confidence 34688999999995 22 299 55433 888877665 4554422 33344445666788999999876
Q ss_pred CCCCCCCcEEEEecCC
Q 005946 482 HFAFDSKKVWFLEEEK 497 (668)
Q Consensus 482 ~FGl~~~qV~~f~Q~~ 497 (668)
.+|+ +|.+..|..
T Consensus 70 ~~~~---~I~y~~e~~ 82 (358)
T COG1208 70 GLGV---RITYVVEKE 82 (358)
T ss_pred ccCC---ceEEEecCC
Confidence 6665 555444433
No 56
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.93 E-value=4 Score=45.84 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=37.8
Q ss_pred CeEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 477 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f 477 (668)
.+++|+||||.|||. ...||.+ +++ .++++++... +.+.+.+ . -.++|.|+.. .+...++|
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~~--~-~~iivv~~~~-~~~i~~~~ 66 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVL-QTL-LGEPMLRFVY-----RALRPLF--G-DNVWTVVGHR-ADMVRAAF 66 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCcee-ccc-CCCcHHHHHH-----HHHHhcC--C-CcEEEEECCC-HHHHHHhc
Confidence 578899999999994 4459942 233 4788877655 5554422 1 1466666653 34455554
No 57
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=89.87 E-value=0.91 Score=45.05 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=37.1
Q ss_pred EEEeccCCCCC-CC---CCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 409 MVLVVHNSEEG-NE---CDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 409 vvllAGG~GtR-g~---~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
+|+||||.|+| +. ..||. +++ .++++++... +.+.+.+ .. .++|.|+ ...+.+++++...
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l-----~~l~~~g--~~-~v~vv~~-~~~~~i~~~~~~~ 65 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLL-----EYLARQG--IS-RIVLSVG-YLAEQIEEYFGDG 65 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHH-----HHHHHCC--CC-EEEEEcc-cCHHHHHHHHcCc
Confidence 47899999999 32 24994 443 3578766654 4554422 21 3566665 4567788888753
No 58
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=89.40 E-value=1.2 Score=48.27 Aligned_cols=67 Identities=9% Similarity=0.184 Sum_probs=45.2
Q ss_pred EEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
+|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ . -.++|+|+....+.++++|.+...|+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l-~pv-~g~pli~~~l-----~~l~~~g--i-~~i~vv~~~~~~~~i~~~~~~~~~~~ 71 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQL-IPV-ANKPILQYAI-----EDLAEAG--I-TDIGIVVGPVTGEEIKEIVGEGERFG 71 (353)
T ss_pred EEEECCcCcCccCccccCCCccc-cEE-CCEeHHHHHH-----HHHHHCC--C-CEEEEEeCCCCHHHHHHHHhcccccC
Confidence 4789999999942 349942 233 3668877655 5555432 1 25678888878899999998755566
Q ss_pred C
Q 005946 485 F 485 (668)
Q Consensus 485 l 485 (668)
+
T Consensus 72 ~ 72 (353)
T TIGR01208 72 A 72 (353)
T ss_pred c
Confidence 4
No 59
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=89.39 E-value=1.1 Score=48.16 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=41.3
Q ss_pred CeEEEEeccCCCCCCC--C--CCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE--C--DPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~--~--~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.+-+|+||||.|||+. + -|| ++++ -++.+.+... +.+...+ .. -++|.|+. ..+.+.+||..
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl-----~~l~~~G--i~-~ivivv~~-~~~~i~~~~~~ 69 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIV-----DEIVAAG--IK-EIVLVTHA-SKNAVENHFDT 69 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHH-----HHHHHCC--CC-EEEEEecC-ChHHHHHHHhc
Confidence 3578999999999953 2 299 5543 4677766654 5555433 21 45677775 66789999964
No 60
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=89.30 E-value=1 Score=44.96 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=38.9
Q ss_pred EEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 409 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
+|+||||.|+|.. ..||.+ +++ .++++++... +.+...+ .. .++|.++. ..+.+++++.+...+|
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~l-l~~-~g~pli~~~l-----~~l~~~~--~~-~iivv~~~-~~~~i~~~~~~~~~~~ 69 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPM-LKV-GGKPILETII-----DRFIAQG--FR-NFYISVNY-LAEMIEDYFGDGSKFG 69 (220)
T ss_pred CEEecCCCccccCcccCCCCCcc-CeE-CCcchHHHHH-----HHHHHCC--Cc-EEEEECcc-CHHHHHHHHCCccccC
Confidence 5899999999942 348942 233 4567766654 5555432 22 34566664 4667778877543334
No 61
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=89.24 E-value=5.8 Score=40.19 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=36.8
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+|+||||.|||.. ..|| +++ + .++++++... +.+...+ . -.++|.|+. .++.+++++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llp--v-~g~pli~~~l-----~~l~~~g--~-~~v~iv~~~-~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVE--F-CNKPMIEHQI-----EALAKAG--V-KEIILAVNY-RPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCccCe--E-CCcchHHHHH-----HHHHHCC--C-cEEEEEeee-CHHHHHHHHhc
Confidence 5889999999942 2489 444 3 3567765544 4554432 1 145677764 55778888874
No 62
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=88.80 E-value=6.8 Score=39.90 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=37.1
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+++++++|||.++|.. +|.+ +++ .++++++... +.+.+.+ . -.++|.|. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~--~K~L-l~i-~Gkpll~~~l-----~~l~~~~--i-~~ivvv~~---~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP--GKPL-ADI-GGKPMIVRVY-----ERASKAG--A-DRVVVATD---DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC--CCcc-ccc-CCcCHHHHHH-----HHHHhcC--C-CeEEEECC---cHHHHHHHHH
Confidence 5789999999999952 5842 223 5788877665 5554431 1 13445443 4677777754
No 63
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=88.06 E-value=1.2 Score=47.04 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=82.8
Q ss_pred EEEeccCCCCCC----CCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 409 MVLVVHNSEEGN----ECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 409 vvllAGG~GtRg----~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
-|+||||.|||+ ...|| ++| + -+|...+.-. +++..++-+ -++|.+++.+-...++++-+-..|
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlp--V-~~KPmi~y~l-----~~L~~aGI~---dI~II~~~~~~~~~~~llGdgs~~ 71 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLP--V-YDKPMIYYPL-----ETLMLAGIR---DILIVVGPEDKPTFKELLGDGSDF 71 (286)
T ss_pred cEEecCcCccccccccccCCcccce--e-cCcchhHhHH-----HHHHHcCCc---eEEEEecCCchhhhhhhhcCcccc
Confidence 378999999995 22378 443 2 3455433322 555554321 466778888888888999888999
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccC-CCCCcccccCCCchHhHHHhhCchHHHHHHcC-ceEEEEEcCCccc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMK-SPWETLQAPVGSGGVFSLLSSHNIIKNLDELG-VEYIQICTANPRN 561 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~-~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~G-i~yi~v~~vDN~l 561 (668)
|. ++++-.|..===+... - ..++=.+. +|.-+. -|.+=++.-| +..+.++.+++ =-.++.+.|+
T Consensus 72 gv---~itY~~Q~~p~GlA~A--v-~~a~~fv~~~~f~l~---LGDNi~~~~l--~~~~~~~~~~~~ga~i~~~~V~--- 137 (286)
T COG1209 72 GV---DITYAVQPEPDGLAHA--V-LIAEDFVGDDDFVLY---LGDNIFQDGL--SELLEHFAEEGSGATILLYEVD--- 137 (286)
T ss_pred Cc---ceEEEecCCCCcHHHH--H-HHHHhhcCCCceEEE---ecCceeccCh--HHHHHHHhccCCCcEEEEEEcC---
Confidence 98 7888888652211000 0 00011111 222111 1211111111 12344444432 2367777877
Q ss_pred cccCHHHHHHHHHcCCcEEEEEeeccCCCCcc
Q 005946 562 AIGNSMFLGFVKSCGADIGFQISEYAKHSEER 593 (668)
Q Consensus 562 ~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~ 593 (668)
||.=.|++.-.+-.-...+++|-..|..+
T Consensus 138 ---dP~rfGV~e~d~~~~v~~l~EKP~~P~SN 166 (286)
T COG1209 138 ---DPSRYGVVEFDEDGKVIGLEEKPKEPKSN 166 (286)
T ss_pred ---CcccceEEEEcCCCcEEEeEECCCCCCCc
Confidence 45556777655222666777776555444
No 64
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=87.70 E-value=1.2 Score=50.90 Aligned_cols=85 Identities=9% Similarity=0.106 Sum_probs=54.0
Q ss_pred CeEEEEeccCCCCCC---CC--CCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 406 KKAMVLVVHNSEEGN---EC--DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 406 kvavvllAGG~GtRg---~~--~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
++-.|+||||.|||+ .. .||-+ +++..++|++|... +++.+++ +.=++ |.|+......+++-+.+.
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~-l~l~~~~sllq~t~-----~r~~~~~--~~~~i-ivt~~~~~~~v~~ql~~~ 75 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQF-LCLKGDLTMLQTTI-----CRLNGVE--CESPV-VICNEQHRFIVAEQLRQL 75 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcce-eECCCCCCHHHHHH-----HHHHhCC--CCCcE-EEeCHHHHHHHHHHHHhc
Confidence 467899999999994 22 28943 34556789988766 6666543 22244 668888888888888764
Q ss_pred CCCCCCCCcEEE--EecCCccccc
Q 005946 481 DHFAFDSKKVWF--LEEEKLPIVS 502 (668)
Q Consensus 481 ~~FGl~~~qV~~--f~Q~~lP~v~ 502 (668)
+. .+.+|.+ ..=++-||+.
T Consensus 76 ~~---~~~~ii~EP~~rnTApaia 96 (478)
T PRK15460 76 NK---LTENIILEPAGRNTAPAIA 96 (478)
T ss_pred CC---ccccEEecCCCCChHHHHH
Confidence 32 1234332 1345677764
No 65
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=87.66 E-value=12 Score=37.80 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.++++|||.++|.. +|.+ +++ .++++++... +.+.+.. .+. -++|.|. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~--~K~l-~~i-~gkpll~~~l-----~~l~~~~-~i~-~ivvv~~---~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP--GKPL-ADI-AGKPMIQHVY-----ERAKKAK-GLD-EVVVATD---DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC--CCCC-ccc-CCcCHHHHHH-----HHHHhCC-CCC-EEEEECC---cHHHHHHHHH
Confidence 4678999999999953 5842 222 5789887765 5555421 111 2344443 4778888764
No 66
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=87.34 E-value=1.8 Score=38.14 Aligned_cols=71 Identities=25% Similarity=0.376 Sum_probs=43.4
Q ss_pred ccchhccCCcEEEEccCCeEeEEEEEec---cCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 005946 176 EFYTRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252 (668)
Q Consensus 176 EfY~~DLIG~~V~d~~~G~~lG~V~dV~---~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~V 252 (668)
.+++.+|.|+.|++ .+|..+|+|.|+. ++|.---|.|...+ .... . ...++.+.|||- .|..|
T Consensus 5 ~~~~s~l~gk~V~~-~~G~~vG~V~dv~ld~~~g~i~~l~v~~~~-~~l~-----~-----~~k~~~v~IP~~--~V~aI 70 (87)
T COG1873 5 MMRLSELLGKEVIT-NDGKYVGTVSDVVLDIKEGKITGLLVIPTN-KGLF-----L-----FGKGKEVIVPYE--YVKAI 70 (87)
T ss_pred hheHHHhcCcEEEc-CCCeEEEEEEeEEEEccCCcEEEEEEecCC-cccc-----c-----cCCCcEEEEehh--HeEEe
Confidence 46899999999996 4899999999974 44544444444210 0000 0 012358999996 23333
Q ss_pred ecCCCEEEEeC
Q 005946 253 DMNGREMQITP 263 (668)
Q Consensus 253 Dle~k~I~V~~ 263 (668)
...|.|..
T Consensus 71 ---Gd~III~~ 78 (87)
T COG1873 71 ---GDIIIIKD 78 (87)
T ss_pred ---cCEEEEec
Confidence 44555554
No 67
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.22 E-value=1.1 Score=43.09 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=32.4
Q ss_pred eEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCcc
Q 005946 407 KAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 468 (668)
Q Consensus 407 vavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~ 468 (668)
+++|+||||.|+|.+. +|. +++ .++++++... +++.+. ++ -.++|.|+..
T Consensus 1 ~~~vIlAgG~s~R~g~-~K~l~~~---~g~~li~~~i-----~~l~~~--~~-~~i~vv~~~~ 51 (186)
T cd04182 1 IAAIILAAGRSSRMGG-NKLLLPL---DGKPLLRHAL-----DAALAA--GL-SRVIVVLGAE 51 (186)
T ss_pred CeEEEECCCCCCCCCC-CceeCee---CCeeHHHHHH-----HHHHhC--CC-CcEEEECCCc
Confidence 4689999999999433 884 433 5788877655 555442 11 2567777654
No 68
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=86.29 E-value=8.1 Score=43.37 Aligned_cols=138 Identities=9% Similarity=0.049 Sum_probs=76.4
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCch-hHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANKS-LALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~ks-l~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.|||+. .-|| ++| + -++. ++++.. +.+.+.+ .. .++|.|.. ..+.++++|.+
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llp--v-~gkp~lI~~~l-----~~l~~~G--i~-~i~vv~~~-~~~~i~~~~~~ 82 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVY--F-GGKFRIIDFAL-----SNCINSG--IR-RIGVLTQY-KAHSLIRHIQR 82 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEE--E-CCEEEEhHHHH-----HHHHHCC--CC-eEEEEecC-CHHHHHHHHHh
Confidence 6899999999999953 2499 444 3 3454 766654 5555432 21 45677764 67888889875
Q ss_pred CCCCCCCCC----cEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEE
Q 005946 480 NDHFAFDSK----KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQIC 555 (668)
Q Consensus 480 n~~FGl~~~----qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~ 555 (668)
. +++... .+.++.+ . ........|-|.||-...- ++.+.+..-+++.|.
T Consensus 83 ~--~~~~~~~~~~~i~i~~~--------~------------~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl 135 (425)
T PRK00725 83 G--WSFFREELGEFVDLLPA--------Q------------QRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVIL 135 (425)
T ss_pred h--hcccccCCCCeEEEeCC--------c------------ccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 3 333111 1111110 0 0000113466877644322 223433334688888
Q ss_pred cCCccccc-cCHHHHHHHHHcCCcEEEEE
Q 005946 556 TANPRNAI-GNSMFLGFVKSCGADIGFQI 583 (668)
Q Consensus 556 ~vDN~l~~-~DP~flG~~~~~~~d~~~kv 583 (668)
+-|++.-. ... ++-+|...++++..-+
T Consensus 136 ~gD~l~~~dl~~-ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 136 AGDHIYKMDYSR-MLADHVESGADCTVAC 163 (425)
T ss_pred cCCeEeccCHHH-HHHHHHHcCCCEEEEE
Confidence 88885432 333 4677778888775543
No 69
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=86.18 E-value=1.9 Score=49.09 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=39.7
Q ss_pred EEEeccCCCCCCC----C-CCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEGNE----C-DPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtRg~----~-~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.|+||||.|||.. . .||-+ +++..++++++... +++.+++ .. ..+|.|+..-...+.+.+++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~-l~l~g~~~ll~~tl-----~~l~~~~--~~-~iviv~~~~~~~~~~~~l~~ 69 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQF-LALVGDLTMLQQTL-----KRLAGLP--CS-SPLVICNEEHRFIVAEQLRE 69 (468)
T ss_pred EEEecCcccccCCccccCCCCCce-eEcCCCCcHHHHHH-----HHHhcCC--Cc-CcEEecCHHHHHHHHHHHHH
Confidence 5899999999953 2 49943 34545689877755 5665432 22 45577776555556666664
No 70
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=86.08 E-value=11 Score=38.00 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=79.2
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
....|+||||+++|- ..|.+ +.+ .++++++... +++.. .+. .++|... .+.+. |. .||
T Consensus 4 ~~~~vILAGG~srRm--~dK~l-~~~-~g~~lie~v~-----~~L~~---~~~-~vvi~~~-~~~~~---~~----~~g- 61 (192)
T COG0746 4 PMTGVILAGGKSRRM--RDKAL-LPL-NGRPLIEHVI-----DRLRP---QVD-VVVISAN-RNQGR---YA----EFG- 61 (192)
T ss_pred CceEEEecCCccccc--ccccc-cee-CCeEHHHHHH-----HHhcc---cCC-EEEEeCC-Cchhh---hh----ccC-
Confidence 578899999999998 66632 223 4688887766 55533 334 4555433 33331 22 233
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccC
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 565 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~D 565 (668)
+|.+.+... +. .| =+|++.+|. .-+-+|+.|..+|.+.+ .
T Consensus 62 ------------~~vv~D~~~------------~~---GP--L~Gi~~al~---------~~~~~~~~v~~~D~P~i--~ 101 (192)
T COG0746 62 ------------LPVVPDELP------------GF---GP--LAGILAALR---------HFGTEWVLVLPCDMPFI--P 101 (192)
T ss_pred ------------CceeecCCC------------CC---CC--HHHHHHHHH---------hCCCCeEEEEecCCCCC--C
Confidence 344433311 10 11 135565554 44588999999999999 5
Q ss_pred HHHHHHHHHcCCcEEEEEeeccCCC-CcccceeeeHHHHHHHhh
Q 005946 566 SMFLGFVKSCGADIGFQISEYAKHS-EERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 566 P~flG~~~~~~~d~~~kvV~k~~~~-~E~~~h~fs~~fl~~~~~ 608 (668)
|-++-+..+....-...++.+..+. .|...-+++.+.+..+..
T Consensus 102 ~~lv~~l~~~~~~~~~~~~~~~~~g~~~Pl~aly~~~l~~~l~~ 145 (192)
T COG0746 102 PELVERLLSAFKQTGAAIVPAHDDGRLEPLFALYHRALLPALEE 145 (192)
T ss_pred HHHHHHHHHhhcccCCcEEEeCCCCceeeEEEEehHHHHHHHHH
Confidence 5566666654443334555554221 244444456666666543
No 71
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=86.05 E-value=9.1 Score=42.21 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=75.3
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++++|+||||+|+|.+..+|. ++ + .++++++... +++.. .+ -+++|.++.. ++....++ .+
T Consensus 5 ~i~~VILAgG~s~Rmgg~~K~ll~--i-~Gkpll~~~i-----~~l~~---~~-~~iivvv~~~-~~~~~~~~-----~~ 66 (366)
T PRK14489 5 QIAGVILAGGLSRRMNGRDKALIL--L-GGKPLIERVV-----DRLRP---QF-ARIHLNINRD-PARYQDLF-----PG 66 (366)
T ss_pred CceEEEEcCCcccCCCCCCCceeE--E-CCeeHHHHHH-----HHHHh---hC-CEEEEEcCCC-HHHHHhhc-----cC
Confidence 688999999999995346884 43 3 4788876654 44432 11 2455545533 22222211 01
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccccc
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 564 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~ 564 (668)
++++..... | + ..| -+|++.+|.. -+.+|+.|...|-+++
T Consensus 67 -------------~~~i~d~~~----g-------~---~G~--~~si~~gl~~---------~~~~~vlv~~~D~P~i-- 106 (366)
T PRK14489 67 -------------LPVYPDILP----G-------F---QGP--LSGILAGLEH---------ADSEYLFVVACDTPFL-- 106 (366)
T ss_pred -------------CcEEecCCC----C-------C---CCh--HHHHHHHHHh---------cCCCcEEEeeCCcCCC--
Confidence 111111100 0 0 001 1446665543 2568899999999888
Q ss_pred CHHHHHHHHH----cCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 565 NSMFLGFVKS----CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 565 DP~flG~~~~----~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
+|-++-.... .++++.. ++.....+.+--+|+.+++..+.+
T Consensus 107 ~~~~i~~L~~~~~~~~~~~v~---~~~g~~g~Pl~aiy~~~~~~~l~~ 151 (366)
T PRK14489 107 PENLVKRLSKALAIEGADIAV---PHDGERAHPLFALYHRSCLPALRR 151 (366)
T ss_pred CHHHHHHHHHHhhccCCeEEE---EecCCCceeeEEEEcHHHHHHHHH
Confidence 5555555444 4555432 332223344444788888877754
No 72
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=85.81 E-value=21 Score=35.47 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=68.3
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++++|++|||.|+|.. .|.+ .++ .++++++... +.+.+.+. .. .++|-| +++.+.++++++ |.
T Consensus 1 ~~~~iIlA~G~s~R~~--~K~l-~~l-~Gkpll~~~l-----~~l~~~~~-~~-~IvV~~---~~~~i~~~~~~~---~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP--GKNI-RPL-GGKPLIAWTI-----EAALESKL-FD-RVVVST---DDEEIAEVARKY---GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC--Cccc-chh-CCccHHHHHH-----HHHHhCCC-CC-EEEEEC---CcHHHHHHHHHh---CC
Confidence 5789999999999952 3632 122 5788877655 55544221 11 244433 346666666542 32
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCch-HhHHHhhCchHHHHHHc--CceEEEEEcCCcccc
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGG-VFSLLSSHNIIKNLDEL--GVEYIQICTANPRNA 562 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Gg-v~~aL~~~gil~~l~~~--Gi~yi~v~~vDN~l~ 562 (668)
. +. + +. + ..++....|.++ +..++ +.+.+. +.+++.+++.|.++.
T Consensus 64 --~-~~-~-------~~-~--------------~~~~~~~~~~~~~i~~~l------~~l~~~~~~~d~vlv~~~D~P~i 111 (223)
T cd02513 64 --E-VP-F-------LR-P--------------AELATDTASSIDVILHAL------DQLEELGRDFDIVVLLQPTSPLR 111 (223)
T ss_pred --C-ce-e-------eC-C--------------hHHCCCCCCcHHHHHHHH------HHHHHhCCCCCEEEEeCCCCCcC
Confidence 0 11 0 10 1 111111112222 33333 233332 368999999999998
Q ss_pred ccCH--HHHHHHHHcCCcEEEEEeecc
Q 005946 563 IGNS--MFLGFVKSCGADIGFQISEYA 587 (668)
Q Consensus 563 ~~DP--~flG~~~~~~~d~~~kvV~k~ 587 (668)
..+- .++-.+...++++..-+++..
T Consensus 112 ~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 112 SAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 3111 234444456778766665544
No 73
>PRK10122 GalU regulator GalF; Provisional
Probab=85.47 E-value=2.8 Score=44.82 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCCCCC---CC-CC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE---CD-PH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg~---~~-pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|++|||.|||.. .. || ++|+ -++.+.+... +.+.+.+ .. .++|+|. ...+.+.+||.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l-----~~l~~~G--i~-~i~iv~~-~~~~~i~~~~~ 68 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIV-----DEIVAAG--IK-EIVLVTH-ASKNAVENHFD 68 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHH-----HHHHHCC--CC-EEEEEcC-CChHHHHHHHh
Confidence 5778999999999942 23 99 5543 3568876655 5665533 21 3566665 47788999996
No 74
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=84.92 E-value=2.2 Score=42.38 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=36.3
Q ss_pred EEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 408 avvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
.+|+||||+|||.+..-|-+ +++ .++.+...-. +.+.+ .+ =-+++-||..| ..|++|+.+-
T Consensus 2 ~~iiMAGGrGtRmg~~EKPl-leV-~GkpLI~~v~-----~al~~---~~-d~i~v~isp~t-p~t~~~~~~~ 62 (177)
T COG2266 2 MAIIMAGGRGTRMGRPEKPL-LEV-CGKPLIDRVL-----EALRK---IV-DEIIVAISPHT-PKTKEYLESV 62 (177)
T ss_pred ceEEecCCcccccCCCcCcc-hhh-CCccHHHHHH-----HHHHh---hc-CcEEEEeCCCC-HhHHHHHHhc
Confidence 57999999999943333411 122 5666643322 33322 11 24677788665 6789998874
No 75
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=84.37 E-value=15 Score=37.94 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=36.5
Q ss_pred EEeccC--CCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 410 VLVVHN--SEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 410 vllAGG--~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
|+|||| .|||.. ..|| +++ + .++++++... +.+.++. +.. -++|.|.. ..+.+.+++.+.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llp--v-~g~plI~~~l-----~~l~~~~-gi~-~i~iv~~~-~~~~i~~~l~~~ 68 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFP--V-AGKPMIHHHI-----EACAKVP-DLK-EVLLIGFY-PESVFSDFISDA 68 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCe--E-CCeeHHHHHH-----HHHHhcC-CCc-EEEEEecC-CHHHHHHHHHhc
Confidence 677888 899942 2399 444 3 3568877655 5554421 121 23455554 678889999753
No 76
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=84.33 E-value=11 Score=41.12 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=80.5
Q ss_pred CeEEEEeccCCCCCC----CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC-
Q 005946 406 KKAMVLVVHNSEEGN----ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN- 480 (668)
Q Consensus 406 kvavvllAGG~GtRg----~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n- 480 (668)
.|+.++|.||-|||+ ..-||.+ +++. ++.+...|. +.+...+ ---+|+.|+..-..-.+.+.+.+
T Consensus 9 ~vkaiILvGG~GTRLrPLT~t~pKPl-Vpfg-n~pmI~hqi-----eal~nsG---i~~I~la~~y~s~sl~~~~~k~y~ 78 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPLTLTRPKPL-VPFG-NKPMILHQI-----EALINSG---ITKIVLATQYNSESLNRHLSKAYG 78 (371)
T ss_pred ceeEEEEecCCCceeeceeccCCCcc-cccC-cchhhHHHH-----HHHHhCC---CcEEEEEEecCcHHHHHHHHHHhh
Confidence 688999999999995 2338842 3454 777766665 5555432 23577888876665556666554
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcc
Q 005946 481 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPR 560 (668)
Q Consensus 481 ~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~ 560 (668)
..||. .|. |.|++- |-|--|-..+-++ .|....+. -++|-|-|-+
T Consensus 79 ~~lgV---ei~-~s~ete--------------------------plgtaGpl~laR~--~L~~~~~~---~ffVLnsDvi 123 (371)
T KOG1322|consen 79 KELGV---EIL-ASTETE--------------------------PLGTAGPLALARD--FLWVFEDA---PFFVLNSDVI 123 (371)
T ss_pred hccce---EEE-EEeccC--------------------------CCcccchHHHHHH--HhhhcCCC---cEEEecCCee
Confidence 34442 222 121111 5555555554443 22222211 4566666644
Q ss_pred ccccCHHHHHHHHHcCCcEEEEEeecc
Q 005946 561 NAIGNSMFLGFVKSCGADIGFQISEYA 587 (668)
Q Consensus 561 l~~~DP~flG~~~~~~~d~~~kvV~k~ 587 (668)
----=-.|+-+|.++++|...-|.+-.
T Consensus 124 ~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 124 CRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred ecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 332334689999999999988776655
No 77
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=84.21 E-value=2 Score=42.79 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.5
Q ss_pred eEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchH
Q 005946 407 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~ 471 (668)
|++|+||||.|+| |...||.+ +++ .++++++... +++.+.+ .+ -.++|.|+....+
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l-~~i-~Gkpll~~~i-----~~l~~~~-~~-~~ivVv~~~~~~~ 57 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQF-LEL-GGKPVLEHTL-----EAFLAHP-AI-DEIVVVVPPDDID 57 (218)
T ss_pred CEEEEECCcccccCCCCCCcce-eEE-CCeEHHHHHH-----HHHhcCC-CC-CEEEEEeChhHHH
Confidence 4679999999999 54468842 223 4788876655 5554421 11 2456767655433
No 78
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=84.10 E-value=2.4 Score=42.89 Aligned_cols=55 Identities=9% Similarity=0.101 Sum_probs=34.6
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccc
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 469 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t 469 (668)
++++|+||||.|+| |+..||.+ .++ .++++++... +++.+.. ..=.++|.|....
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l-~~~-~g~pli~~~l-----~~l~~~~--~~~~ivvv~~~~~ 58 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQY-LPL-GGKPILEHTL-----EAFLAHP--RIDEIIVVVPPDD 58 (227)
T ss_pred ceEEEEEcCccccccCCCCCcee-eEE-CCEEHHHHHH-----HHHHcCC--CCCEEEEEeChHH
Confidence 57889999999999 65568942 222 4788876655 5554321 1125667766443
No 79
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=83.48 E-value=2.1 Score=42.92 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=35.7
Q ss_pred EEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 005946 408 AMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 477 (668)
Q Consensus 408 avvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f 477 (668)
++|+||||.|+| |...||.+ .++ .++++++... +++.+.. .+ =.++|.|+....+.....+
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l-~~l-~gkpll~~~l-----~~l~~~~-~~-~~ivVv~~~~~~~~~~~~~ 62 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQY-LEL-GGRPLLEHTL-----DAFLAHP-AI-DEVVVVVSPEDQEFFQKYL 62 (217)
T ss_pred CEEEEcCcccccCCCCCCccE-eEE-CCeEHHHHHH-----HHHhcCC-CC-CEEEEEEChHHHHHHHHHh
Confidence 368999999999 55458942 223 4788876654 5554321 12 2456666655444444443
No 80
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=83.48 E-value=7.8 Score=39.02 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=37.3
Q ss_pred EEEeccCCCCCCC--C--CCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEGNE--C--DPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtRg~--~--~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+|+||||.|+|.. + .||. ++ + .++++++... +.+.+.+ .. .++|+|.. ..+...+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~--~-~g~~li~~~l-----~~l~~~g--i~-~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLE--I-NGKPLLERQI-----ETLKEAG--ID-DIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeee--E-CCEEHHHHHH-----HHHHHCC--Cc-eEEEEecc-CHHHHHHHHhc
Confidence 3789999999942 2 3884 44 3 4578877655 5555432 21 45677775 56777777764
No 81
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=83.17 E-value=2.6 Score=40.82 Aligned_cols=142 Identities=9% Similarity=0.047 Sum_probs=73.6
Q ss_pred EEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCC
Q 005946 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSK 488 (668)
Q Consensus 409 vvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~ 488 (668)
+|+||||.|+|.+ .||.+ +++ .++++++... +++.+. .+ -.++|.|+....+....+ .. .+|
T Consensus 2 ~iIla~G~s~R~g-~~K~l-l~~-~g~pll~~~i-----~~l~~~--~~-~~iivv~~~~~~~~~~~~-~~--~~~---- 63 (188)
T TIGR03310 2 AIILAAGLSSRMG-QNKLL-LPY-KGKTILEHVV-----DNALRL--FF-DEVILVLGHEADELVALL-AN--HSN---- 63 (188)
T ss_pred eEEECCCCcccCC-CCcee-ccc-CCeeHHHHHH-----HHHHHc--CC-CcEEEEeCCcHHHHHHHh-cc--CCC----
Confidence 6899999999953 47842 223 4788876654 555542 22 257777776544322222 11 122
Q ss_pred cEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHH
Q 005946 489 KVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMF 568 (668)
Q Consensus 489 qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~f 568 (668)
+. .+... .+ .....++++.++. . ....+++.++..|.+++ +|..
T Consensus 64 -v~--------~v~~~-------------~~----~~g~~~si~~~l~-~-------~~~~~~vlv~~~D~P~i--~~~~ 107 (188)
T TIGR03310 64 -IT--------LVHNP-------------QY----AEGQSSSIKLGLE-L-------PVQSDGYLFLLGDQPFV--TPDI 107 (188)
T ss_pred -eE--------EEECc-------------Ch----hcCHHHHHHHHhc-C-------CCCCCEEEEEeCCcCCC--CHHH
Confidence 11 11111 00 0011245665553 1 12357999999999987 3333
Q ss_pred ----HHHHHHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 569 ----LGFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 569 ----lG~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
+-.+...+.++..-+..- ...+.+ +|+.+.+..+..
T Consensus 108 i~~l~~~~~~~~~~~~~~~~~~--~~~~Pl--~~~~~~~~~l~~ 147 (188)
T TIGR03310 108 IQLLLEAFALKNDEIVVPLYKG--KRGHPV--LFPRKLFPELLA 147 (188)
T ss_pred HHHHHHHHHhCCCcEEEeecCC--ccCCCE--EECHHHHHHHHh
Confidence 333344555444332221 122333 688887777654
No 82
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=82.44 E-value=25 Score=35.51 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CeEEEEeccCCCCCCCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++++|++|+|.++|.. .| ++++ .++++++... +.+.+.+ .+ -.++|.|. ++.+.+++++
T Consensus 2 ~~~aiIlA~g~s~R~~--~K~l~~i---~GkPli~~~i-----~~l~~~~-~~-~~ivv~t~---~~~i~~~~~~ 61 (238)
T PRK13368 2 KVVVVIPARYGSSRLP--GKPLLDI---LGKPMIQHVY-----ERAAQAA-GV-EEVYVATD---DQRIEDAVEA 61 (238)
T ss_pred cEEEEEecCCCCCCCC--CCccCcc---CCcCHHHHHH-----HHHHhcC-CC-CeEEEECC---hHHHHHHHHH
Confidence 4788999999999953 37 3332 4788877654 4554421 11 23555553 4778888875
No 83
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=82.28 E-value=18 Score=40.83 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=39.8
Q ss_pred CeEEEEeccCCCCCCC-CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~-~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++..|+||||.|+|.. ..||.+ +++ -++++++... +.+.+.+ . -.++|.|+.. .+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l-~pi-~g~pli~~~l-----~~l~~~g--i-~~iiiv~~~~-~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVM-HPL-AGRPMVSWPV-----AAAREAG--A-GRIVLVVGHQ-AEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCcee-cee-CCccHHHHHH-----HHHHhcC--C-CeEEEEECCC-HHHHHHHhcc
Confidence 4678999999999954 458942 233 3567776654 5555432 1 2567777754 5667777753
No 84
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=81.98 E-value=2.8 Score=43.52 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=42.2
Q ss_pred CCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 405 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
.++.+|++|+|.||| |...||-+ ..+ .+++++.... +.+.... .-=.++|+++...+....++.+
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~-l~l-~g~pll~~tl-----~~f~~~~--~i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQY-LEL-GGRPLLEHTL-----EAFLESP--AIDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceE-EEE-CCEEehHHHH-----HHHHhCc--CCCeEEEEEChhhhHHHHHhhh
Confidence 468999999999999 77669953 122 5777765544 4443321 1125667777767777777665
No 85
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=81.69 E-value=1.7 Score=43.43 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=32.6
Q ss_pred cCCeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCC
Q 005946 404 EGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 466 (668)
Q Consensus 404 ~gkvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS 466 (668)
.-++++|+||||+++|.+ .+|.+ .++..++++++... +++..+ .-+++|.++
T Consensus 6 ~~~i~~vILAgG~s~RmG-~~K~l-l~~~g~~~ll~~~i-----~~l~~~----~~~vvvv~~ 57 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG-ENKAL-LPFGSYSSLLEYQY-----TRLLKL----FKKVYISTK 57 (196)
T ss_pred ccCceEEEECCcccccCC-CCceE-EEeCCCCcHHHHHH-----HHHHHh----CCEEEEEEC
Confidence 457899999999999943 46742 23333399877654 455432 124566665
No 86
>TIGR01150 puhA photosynthetic reaction center, subunit H, bacterial. This model describes the photosynthetic reaction center H subunit in non-oxygenic photosynthetic bacteria. The reaction center is an integral membrane pigment-protein that carries out light-driven electron transfer reactions. At the core of reaction center is a collection light-harvesting cofactors and closely associated polypeptides. The core protein complex is made of L, M and H subunits. The common cofactors include bacterichlorophyll, bacteriopheophytins, ubiquinone and no-heme ferrous iron. The net result of electron tranfer reactions is the establishment of proton electrochemical gradient and production of reducing equivalents in the form of NADH. Ultimately, the process results in the reduction of C02 to carbohydrates(C6H12O6) In non-oxygenic organisms, the electron donor is an organic acid rather than water. Much of our current functional understanding of photosynthesis comes from the structural determination
Probab=80.45 E-value=4.9 Score=41.69 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=43.5
Q ss_pred ccCCcEEEEccCCeEeEEEEEec-cCCCc--eEEEEEeccccccccCcccccccCCCCCC-cEEEEecccCccceeecCC
Q 005946 181 DLVGMRVVMKETGELVGTVVNVF-NSGAN--DLLHVMCYSSVNVIEGSEEASSSASDASG-RLVWIPFVEEIVPIVDMNG 256 (668)
Q Consensus 181 DLIG~~V~d~~~G~~lG~V~dV~-~~ga~--DlL~V~~~~~~~~~~~~g~~~~~~~~~~g-kevLIPfv~~fV~~VDle~ 256 (668)
|-.||.|+- .+|+..|+|+|++ +.+.+ -.|||++. ++ +.+|+|+.=. .| .+
T Consensus 150 DPrG~pV~g-~Dg~v~GtV~D~WVDr~E~~iRYlEVel~-------------------~~~~~vLlP~~f~---~i--~~ 204 (252)
T TIGR01150 150 DPRGLPVVA-ADGEVAGKVTDLWVDRPEQYFRYLEVELA-------------------GGARTALLPMGMC---KV--KS 204 (252)
T ss_pred CCCCCeeEc-CCCceeeEEEEEEEcCccceeeEEEEEec-------------------CCCceEEecccce---ec--cC
Confidence 678999994 6799999999997 55555 46777651 34 7899999832 33 67
Q ss_pred CEEEEeCC
Q 005946 257 REMQITPP 264 (668)
Q Consensus 257 k~I~V~~p 264 (668)
+++.|+-.
T Consensus 205 ~~V~v~ai 212 (252)
T TIGR01150 205 DRVVVNSI 212 (252)
T ss_pred CcEEEEEe
Confidence 78888753
No 87
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.09 E-value=4.3 Score=45.44 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=38.7
Q ss_pred eEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 407 KAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 407 vavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+++|+||||.|+| +...||.+ +++ .++++++... +.+.+.+ . ...+|.+... .+.+.+++.+
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~l-l~v-~gkpli~~~l-----~~l~~~g--~-~~iivvv~~~-~~~i~~~~~~ 64 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVL-HPL-GGKSLVERVL-----DSCEELK--P-DRRLVIVGHQ-AEEVEQSLAH 64 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhc-CEE-CChhHHHHHH-----HHHHhCC--C-CeEEEEECCC-HHHHHHHhcc
Confidence 6789999999999 44459942 233 4678877655 5555432 1 2455666543 3456677654
No 88
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=79.89 E-value=3.2 Score=46.13 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=35.2
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchH
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~ 471 (668)
++++|+||||.|+| |...||.+ +++ .++++++... +.+.+.+ .-=.++|.++....+
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKql-l~l-~GkPll~~tl-----~~l~~~~--~i~~IvVVv~~~~~~ 62 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQW-LRI-GGKPLWLHVL-----ENLSSAP--AFKEIVVVIHPDDIA 62 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeE-EEE-CCeeHHHHHH-----HHHhcCC--CCCeEEEEeChHHHH
Confidence 57899999999999 55569943 233 4788876544 5554421 111355666554443
No 89
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=78.83 E-value=3.3 Score=36.92 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEEe
Q 005946 139 KSWILTFEGIDTVEQARPLVGSTLLAR 165 (668)
Q Consensus 139 ~~~ivkf~gId~re~Ae~L~G~~l~v~ 165 (668)
+..|+|++|+||+++|..|.|..++..
T Consensus 26 ~~~liKi~gv~s~~eA~~y~gk~v~yk 52 (100)
T COG2451 26 NVSLIKIEGVDSPEEAQFYLGKRVCYK 52 (100)
T ss_pred ceEEEEEecCCCHHHHHhhhccEEEEE
Confidence 478999999999999999999877554
No 90
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.49 E-value=3.7 Score=46.75 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=41.5
Q ss_pred CeEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.++.|+||||.|||. ...||.+ +++ .++++++... +++.+.+ .-.++|.++.. .+.+.+++..
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~l-lpi-~gkpli~~~l-----~~l~~~g---~~~iivvv~~~-~~~i~~~~~~ 67 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVL-HTL-AGRSMLGHVL-----HAAAGLA---PQHLVVVVGHD-RERVAPAVAE 67 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCcee-cee-CCccHHHHHH-----HHHHhcC---CCcEEEEECCC-HHHHHHHhhc
Confidence 568899999999994 4459942 233 4688877655 5555432 23677777754 4567777754
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=77.01 E-value=4.2 Score=39.90 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=38.2
Q ss_pred chHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHH----HcCCcEEEEEeeccCCCCcccceeeeHHHHH
Q 005946 529 GGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVK----SCGADIGFQISEYAKHSEERFNTMLSMNVMK 604 (668)
Q Consensus 529 Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~----~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~ 604 (668)
.+++.+|.. ....+.+|+.|+..|-+++ +|-.+-... ....++.. .....-.+.. -+|+.+.+.
T Consensus 82 ~si~~gl~~------~~~~~~d~vlv~~~D~P~v--~~~~i~~L~~~~~~~~~~~~~---~~~~g~~~~p-~~~~~~~~~ 149 (190)
T TIGR03202 82 HSLKCGLRK------AEAMGADAVVILLADQPFL--TADVINALLALAKRRPDDYVA---ASFKGKPRPP-ILFSKSLFP 149 (190)
T ss_pred HHHHHHHHH------hccCCCCeEEEEeCCCCCC--CHHHHHHHHHHHhhCCCCEEE---EecCCCCCCC-eEEcHHHHH
Confidence 456666653 2234688999999999999 333333322 22333322 2211112333 588888888
Q ss_pred HHhh
Q 005946 605 KLTN 608 (668)
Q Consensus 605 ~~~~ 608 (668)
.+..
T Consensus 150 ~l~~ 153 (190)
T TIGR03202 150 KLKA 153 (190)
T ss_pred HHHh
Confidence 7754
No 92
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=76.81 E-value=4.4 Score=45.32 Aligned_cols=63 Identities=5% Similarity=0.032 Sum_probs=40.2
Q ss_pred CeEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.|+|. ...||.+ +++ .++++++... +.+.+.+ . -..+|.|+. ..+.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~l-l~v-~gkpli~~~l-----~~l~~~g--i-~~ivvv~~~-~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVL-HPV-AGRPMLAHVL-----AAAASLG--P-SRVAVVVGP-GAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCccc-CEE-CCchHHHHHH-----HHHHhCC--C-CcEEEEECC-CHHHHHHHhhc
Confidence 578899999999995 4459942 233 4678877655 5555432 1 245666665 45667777653
No 93
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=76.32 E-value=3.1 Score=40.99 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=33.3
Q ss_pred CCeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCc
Q 005946 405 GKKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPA 467 (668)
Q Consensus 405 gkvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~ 467 (668)
.++.+|+||||.|+|.+..+|. +++ .++++++... +.+.. .+. +++|.|+.
T Consensus 2 ~~~~~vILA~G~s~Rm~~~~K~ll~~---~g~~ll~~~i-----~~l~~---~~~-~i~vv~~~ 53 (193)
T PRK00317 2 PPITGVILAGGRSRRMGGVDKGLQEL---NGKPLIQHVI-----ERLAP---QVD-EIVINANR 53 (193)
T ss_pred CCceEEEEcCCCcccCCCCCCceeEE---CCEEHHHHHH-----HHHhh---hCC-EEEEECCC
Confidence 3688999999999995346784 333 5788877655 44431 222 56666664
No 94
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=76.05 E-value=4.1 Score=45.48 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=39.0
Q ss_pred EEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 408 AMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 408 avvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
-+|+||||.|||. ...||.+ +++ .++++++... +.+.+.+ . -.++|+++.. .+.+++++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~-~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVL-HPL-AGKPMLEHVI-----DAARALG--P-QKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhh-cee-CCccHHHHHH-----HHHHhCC--C-CeEEEEECCC-HHHHHHHhcC
Confidence 3688899999994 4459942 233 4678877654 5555432 1 2557777765 5667777764
No 95
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=75.77 E-value=2.9 Score=36.86 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEE-EeC
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTLL-ARE 166 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l~-v~~ 166 (668)
.+..|+|++||+|+++|+.+.|..+. +.+
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk 48 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDP 48 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeC
Confidence 46789999999999999999999874 444
No 96
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=75.73 E-value=4.8 Score=45.95 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=39.8
Q ss_pred CeEEEEeccCCCCCC-CCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN-ECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|+||||.|||. ...||. +++ .++++++... +++.+.+ + -.++|.|.. ..+.++++|+
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l-----~~l~~~g--i-~~ivvv~~~-~~~~i~~~~~ 69 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAV-----KAARDLG--A-RKIVVVTGH-GAEQVEAALQ 69 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHH-----HHHHhCC--C-CeEEEEeCC-CHHHHHHHhc
Confidence 578899999999995 445994 443 3578877654 5655432 2 245666665 4566777774
No 97
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=75.36 E-value=3 Score=40.57 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=33.7
Q ss_pred CceEEEEEcCCccccccCHHHHHHHHH----cCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 548 GVEYIQICTANPRNAIGNSMFLGFVKS----CGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 548 Gi~yi~v~~vDN~l~~~DP~flG~~~~----~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
+.+++.|...|.+++ +|..+-.... .++++.. + ......+.+--+|+.+++..+..
T Consensus 87 ~~~~vlv~~~D~P~i--~~~~i~~l~~~~~~~~~~~~~-~--~~~~~~~P~~~~~~~~~~~~l~~ 146 (186)
T TIGR02665 87 GTDWVLTVPCDTPFL--PEDLVARLAAALEASDADIAV-A--HDGGRWHPVFALWPVALAPDLEA 146 (186)
T ss_pred CCCeEEEEecCCCcC--CHHHHHHHHHHhhccCCcEEE-E--ecCCcccCEEEEEhHHHHHHHHH
Confidence 568999999999988 4444444332 3444444 2 22123344444788888877754
No 98
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=75.33 E-value=5.6 Score=40.97 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=38.7
Q ss_pred EEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 408 AMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 408 avvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
-+|+||||.|||.. ..|| ++++ .+++++++.. +.+... +.. .++|+|+.. .+.+.++|.+
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l-----~~l~~~--gi~-~v~iv~~~~-~~~i~~~~~~ 66 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVV-----EEAVEA--GIE-DILIVTGRG-KRAIEDHFDT 66 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHH-----HHHHhC--CCC-EEEEEeCCc-HHHHHHHhcc
Confidence 36899999999943 2388 4443 2568877655 455442 221 467777755 6678888863
No 99
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=74.37 E-value=5.7 Score=41.14 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=38.1
Q ss_pred EEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+|++|||.|||.. ..|| ++++ .++++++... +.+.+.+ .. .++|+|.. ..+.+.++|..
T Consensus 3 aiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l-----~~l~~~g--i~-~i~iv~~~-~~~~i~~~~~~ 66 (267)
T cd02541 3 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIV-----EEAVAAG--IE-DIIIVTGR-GKRAIEDHFDR 66 (267)
T ss_pred EEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHH-----HHHHHCC--CC-EEEEEeCC-chHHHHHHhCC
Confidence 6899999999942 2389 4443 3578877755 5555432 21 45677765 55778888854
No 100
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=72.82 E-value=11 Score=39.59 Aligned_cols=90 Identities=27% Similarity=0.420 Sum_probs=56.3
Q ss_pred EeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecc----------cCccce-eecCCCEEEEeC
Q 005946 195 LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFV----------EEIVPI-VDMNGREMQITP 263 (668)
Q Consensus 195 ~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv----------~~fV~~-VDle~k~I~V~~ 263 (668)
.+|+|.+|.++||.-.|. +. +|.+-|||.- .++|+. =..-.+.|.|++
T Consensus 15 Vv~tV~~V~~~GAyv~L~-EY--------------------~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~ 73 (269)
T COG1093 15 VVGTVKQVADYGAYVELD-EY--------------------PGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDP 73 (269)
T ss_pred EEEEEEEeeccccEEEee-cc--------------------CCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcC
Confidence 789999999999864332 22 4677788863 333321 011134577888
Q ss_pred CCCcccccCCcchhhhhHHHhhhhHHhHhhhHHHHHHHHHHH
Q 005946 264 PKGLLELNLRTDERSKKERRQLEWKERKKFQKRLIAAKKKLR 305 (668)
Q Consensus 264 peGLLel~~~~~~~~~~~~r~~e~~e~~k~~~~~~~l~~~L~ 305 (668)
-.|-+||.++.=.-..+..--++||-.+|..+-+.-+.++|.
T Consensus 74 ~rg~IDLSlkrV~~~q~~~k~~~wk~~qka~klle~aaekl~ 115 (269)
T COG1093 74 KRGHIDLSLKRVTEHQRRKKIQEWKKEQKADKLLELAAEKLG 115 (269)
T ss_pred CCCeEeeehhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 889999986432222222335689998888766666655553
No 101
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=72.03 E-value=8.8 Score=35.81 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.6
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEE-EeCC
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTLL-AREG 167 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l~-v~~~ 167 (668)
.+..|||++||+|+++|+-+.|..+. |.+.
T Consensus 38 ~~~aLlKieGV~~~~~a~fYlGKrvayvyka 68 (120)
T PTZ00041 38 PNVALLKIEGVNTREDARFYLGKRVAYVYKA 68 (120)
T ss_pred CceEEEEecCcCChhhhHhhccceEEEEEcC
Confidence 46889999999999999999999874 4444
No 102
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=67.65 E-value=5.4 Score=35.83 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred CceEEEEecCCCCHHHHhcccCCeE-EEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l-~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
.+..|+|++||+|+++|+.+.|..+ ||.+..-. .. | ...-...|+|+...-+.+ +...+.
T Consensus 19 ~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~-~~----------~-----~k~r~iwGkV~r~HGnsG--vVrAkF 79 (95)
T PF01247_consen 19 PNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNK-KN----------G-----SKGRVIWGKVTRPHGNSG--VVRAKF 79 (95)
T ss_dssp EEEEEEEESS-STCHHHHTTTT-EEEEEECE-SS-ST----------T-----ECSEEEEEEEEEESTTTT--EEEEEE
T ss_pred CCeeEEeecCccCHHHHHhhcCcEEEEEEecccc-cC----------C-----CcEeEEEEEEEeEEcCCC--EEEEEe
Confidence 3578999999999999999999886 44553321 11 1 112246899999875433 555554
No 103
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=66.94 E-value=15 Score=31.68 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.2
Q ss_pred hhccCCcEEEEccCCeEeEEE--EEec
Q 005946 179 TRDLVGMRVVMKETGELVGTV--VNVF 203 (668)
Q Consensus 179 ~~DLIG~~V~d~~~G~~lG~V--~dV~ 203 (668)
++||.|+.|++-.+|+.+|.| .|+.
T Consensus 2 ~seL~~keVIni~~G~~lG~v~~~Dl~ 28 (76)
T TIGR02888 2 LSDLRGKEIINVNDGERLGVIGNIDLE 28 (76)
T ss_pred HHHccCCCEEECCCCcEeeccccceEE
Confidence 579999999998899999999 7763
No 104
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=66.23 E-value=5.8 Score=43.76 Aligned_cols=34 Identities=0% Similarity=-0.080 Sum_probs=24.0
Q ss_pred CCeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHH
Q 005946 405 GKKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQT 442 (668)
Q Consensus 405 gkvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ 442 (668)
-+++.|+||||+|+|-+ .+|. ++ + .++++++...
T Consensus 173 ~~i~~iILAGG~SsRmG-~~K~ll~--~-~Gk~ll~~~l 207 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG-SDKALLS--Y-HESNQLVHTA 207 (369)
T ss_pred CCceEEEEcCCccccCC-CCcEEEE--E-CCccHHHHHH
Confidence 35789999999999943 3774 43 3 4788876544
No 105
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=64.01 E-value=13 Score=39.97 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=38.3
Q ss_pred eEEEEeccCCCCCC--C--CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 407 KAMVLVVHNSEEGN--E--CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 407 vavvllAGG~GtRg--~--~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.-+|++|||.|||. . .-|| +++ + .++++++... +.+.+.+ . -.++|++.. ..+.+.++|..
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~p--v-~g~pii~~~l-----~~l~~~g--i-~~i~vv~~~-~~~~i~~~~~~ 74 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLP--L-VDKPLIQYVV-----NECIAAG--I-TEIVLVTHS-SKNSIENHFDT 74 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeE--E-CCEEHHHHHH-----HHHHHCC--C-CEEEEEeCC-CHHHHHHHHcc
Confidence 45788899999994 2 2489 444 3 4568776654 5555432 1 134555554 56889999964
No 106
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=62.83 E-value=8.1 Score=38.62 Aligned_cols=48 Identities=6% Similarity=-0.008 Sum_probs=30.7
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 466 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS 466 (668)
+++.|+||||+|+|-+. +|. +++ .++++++... +.+.. .+ -+++|.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~-~K~ll~~---~g~~ll~~~i-----~~l~~---~~-~~ivvv~~ 55 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ-DKALLPW---QGVPLLQRVA-----RIAAA---CA-DEVYIITP 55 (200)
T ss_pred CceEEEEcCCCcccCCC-CceeeEE---CCEeHHHHHH-----HHHHh---hC-CEEEEECC
Confidence 57899999999999332 573 433 4788876654 44432 12 35666664
No 107
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=62.21 E-value=20 Score=37.00 Aligned_cols=30 Identities=3% Similarity=0.062 Sum_probs=20.3
Q ss_pred EEEeccCCCCCCCCCCCcccccCCCCchhHHHHH
Q 005946 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 442 (668)
Q Consensus 409 vvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ 442 (668)
+|++|+|.|||.. +|.+ +++ .++++++...
T Consensus 2 ~iIpA~g~s~R~~--~K~L-~~l-~GkPli~~~l 31 (238)
T TIGR00466 2 VIIPARLASSRLP--GKPL-EDI-FGKPMIVHVA 31 (238)
T ss_pred EEEecCCCCCCCC--CCee-ccc-CCcCHHHHHH
Confidence 5889999999963 5743 223 5788776544
No 108
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=61.32 E-value=51 Score=36.93 Aligned_cols=144 Identities=11% Similarity=0.081 Sum_probs=84.2
Q ss_pred CCeEEEEeccCCCCCCC--CC--CCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 405 GKKAMVLVVHNSEEGNE--CD--PHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 405 gkvavvllAGG~GtRg~--~~--pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
.++-.++||||+|+|+. ++ +|- .+++..+--+.++-. ..... .+ ---+++.|=...| ...+++..-
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~Rakp-AVpFgGkYRiIDF~L-----SN~vN--SG-i~~I~VltQy~~~-SL~~Hi~~G 73 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKP-AVPFGGKYRIIDFAL-----SNCVN--SG-IRRIGVLTQYKSH-SLNDHIGRG 73 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccc-ccccCceeEEEeEEc-----ccccc--cC-CCeEEEEeccchh-HHHHHhhCC
Confidence 36778899999999953 33 552 133434444444332 22221 11 2256788888888 888888888
Q ss_pred CCCCCCC--CcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCC
Q 005946 481 DHFAFDS--KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTAN 558 (668)
Q Consensus 481 ~~FGl~~--~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vD 558 (668)
..|+++. +.|+++. +-... + ++. |. -|..+ |++++ +..+.+-+.+|+.|.+-|
T Consensus 74 ~~w~l~~~~~~v~ilp-----~~~~~-~----~~~---------wy-~Gtad---ai~Qn--l~~i~~~~~eyvlIlsgD 128 (393)
T COG0448 74 WPWDLDRKNGGVFILP-----AQQRE-G----GER---------WY-EGTAD---AIYQN--LLIIRRSDPEYVLILSGD 128 (393)
T ss_pred CccccccccCcEEEeC-----chhcc-C----CCc---------ce-eccHH---HHHHh--HHHHHhcCCCEEEEecCC
Confidence 7787753 3344332 21111 0 111 11 12221 22222 445567799999999988
Q ss_pred ccccccC-HHHHHHHHHcCCcEEEEEe
Q 005946 559 PRNAIGN-SMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 559 N~l~~~D-P~flG~~~~~~~d~~~kvV 584 (668)
-+-- .| -.+|=+|+..|+||..-|.
T Consensus 129 hIYk-mDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 129 HIYK-MDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred EEEe-cCHHHHHHHHHHcCCCEEEEEE
Confidence 7644 33 3478999999999977655
No 109
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=60.34 E-value=11 Score=34.28 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred ceEEEEecCCCCHHHHhcccCCe-EEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccC
Q 005946 139 KSWILTFEGIDTVEQARPLVGST-LLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNS 205 (668)
Q Consensus 139 ~~~ivkf~gId~re~Ae~L~G~~-l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ 205 (668)
+..|||++|++++|+|+-+.|.. +||-++. |+- -|-+.. .+.|+|+-..-+
T Consensus 30 ~t~llkIEGv~skeEa~fYlGkR~~yvYKa~-~~~----------~~~k~R-----vIWGkVTr~HGN 81 (111)
T KOG0887|consen 30 NTSLLKIEGVYSKEEASFYLGKRCVYVYKAK-PEV----------RGSKTR-----VIWGKVTRPHGN 81 (111)
T ss_pred CcEEEEEecccchhhhheeecCcEEEEEecC-CCC----------CCceEE-----EEEEEEecccCC
Confidence 46799999999999999999999 8888887 222 233332 368888887643
No 110
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.12 E-value=16 Score=41.09 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=38.4
Q ss_pred CeEEEEeccCCCCCCC-CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg~-~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|+||||.|||.. ..||.+ +++ .++++++... +.+.+.+ . -.+++.++. ..+.+++++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l-~~i-~gkpli~~~i-----~~l~~~g--i-~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVL-HTL-AGKPMVQHVI-----DAANELG--A-QHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhc-cee-CChhHHHHHH-----HHHHhcC--C-CcEEEEECC-CHHHHHHhhc
Confidence 5788999999999954 459942 233 4688766544 4444322 2 246666764 4456666664
No 111
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=60.01 E-value=11 Score=41.55 Aligned_cols=34 Identities=3% Similarity=-0.112 Sum_probs=25.0
Q ss_pred CCeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHH
Q 005946 405 GKKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQT 442 (668)
Q Consensus 405 gkvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ 442 (668)
+.+..|+||||+|+|-+ .+|. ++ + .++++++...
T Consensus 159 ~~i~~IILAGGkSsRMG-~dKaLL~--~-~GkpLl~~~i 193 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMG-KDKALLN--Y-QGQPHAQYLY 193 (346)
T ss_pred CCceEEEEeccccccCC-CCcccce--e-CCccHHHHHH
Confidence 36789999999999943 4774 43 3 4789887754
No 112
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=58.60 E-value=23 Score=35.69 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 409 MVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
+|+||||.|+|.. ..||.+ +++ .++++++... +.+.+. +.. -.+|+++... +.+.+++.+.
T Consensus 3 avIlagg~g~rl~plt~~~pK~l-lpv-~g~pli~~~l-----~~l~~~--gi~-~i~vv~~~~~-~~~~~~~~~~ 67 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKAL-LPV-ANVPLIDYTL-----EWLEKA--GVE-EVFVVCCEHS-QAIIEHLLKS 67 (216)
T ss_pred EEEEeCCCccccCccccCCCccc-ceE-CCEEHHHHHH-----HHHHHC--CCC-eEEEEeCCcH-HHHHHHHHhc
Confidence 4679999999942 238842 233 3668776654 444432 221 3667777554 5566666654
No 113
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=58.26 E-value=13 Score=39.52 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=29.1
Q ss_pred EEEeccCCCCC-C-CCC--CC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCcc
Q 005946 409 MVLVVHNSEEG-N-ECD--PH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 468 (668)
Q Consensus 409 vvllAGG~GtR-g-~~~--pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~ 468 (668)
.|+-|.|.||| + .+. || ++|| -+|...|+-. ++....| . =-++|.|+..
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiV-----eEa~~aG--I-e~i~iVTgr~ 60 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIV-----EEAVAAG--I-EEILIVTGRG 60 (291)
T ss_pred EEEEccCcccccccccccCchhhccc---cCchhHHHHH-----HHHHHcC--C-CEEEEEecCC
Confidence 35566779999 4 333 88 6654 4577766654 5655543 2 1455666643
No 114
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=57.22 E-value=5.7 Score=29.95 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=13.1
Q ss_pred CCCCCCC---CCcEEEEe
Q 005946 480 NDHFAFD---SKKVWFLE 494 (668)
Q Consensus 480 n~~FGl~---~~qV~~f~ 494 (668)
|+|||++ ++|||||.
T Consensus 4 n~~FGie~~~sdqIWFYG 21 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFYG 21 (40)
T ss_pred hhhcCccccccccEEEee
Confidence 7899998 89999984
No 115
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=56.93 E-value=9 Score=41.58 Aligned_cols=59 Identities=3% Similarity=0.000 Sum_probs=35.7
Q ss_pred EEeccCCCCCCC----CCCCcccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 410 VLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 410 vllAGG~GtRg~----~~pK~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
|+||||.|||+. ..||.+ +++ -++ .+++... +.+.+.+ .. .++|+|.. ..+.+.++|.+
T Consensus 2 iILAaG~gtRl~plt~~~pK~l-lpv-~g~~pli~~~l-----~~l~~~g--i~-~i~iv~~~-~~~~i~~~~~~ 65 (361)
T TIGR02091 2 MVLAGGRGSRLSPLTKRRAKPA-VPF-GGKYRIIDFPL-----SNCINSG--IR-RIGVLTQY-KSHSLNRHIQR 65 (361)
T ss_pred EEeCCCCCCccchhhhCCcccc-cee-cceeeEeeehh-----hhhhhcC--Cc-eEEEEecc-ChHHHHHHHHh
Confidence 789999999943 249942 233 245 5766554 4554432 11 45666665 44568888875
No 116
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=56.74 E-value=20 Score=40.05 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=34.9
Q ss_pred EEEEeccCCCCCC-CCCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 408 AMVLVVHNSEEGN-ECDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 408 avvllAGG~GtRg-~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
.+|+||||.|||. ...|| +++ + .++++++... +.+.+.. -.++|.|+.. .+.+.+++.
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~--v-~gkpli~~~l-----~~l~~~~----~~i~vv~~~~-~~~i~~~~~ 61 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHK--I-SGKPMINWVI-----DTAKKVA----QKVGVVLGHE-AELVKKLLP 61 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeE--E-CCeeHHHHHH-----HHHHhcC----CcEEEEeCCC-HHHHHHhcc
Confidence 4689999999995 44599 443 3 3678876654 4444422 1356666643 355555553
No 117
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=56.69 E-value=21 Score=40.05 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=36.2
Q ss_pred eEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 407 KAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 407 vavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
+.+|+||||.|||. ...||.+ +++ .++++++... +++.+.+ . -.++|.++.. .+.+.+++.
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~l-l~i-~Gkpli~~~l-----~~l~~~g--i-~~iivvv~~~-~~~i~~~~~ 64 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVL-HKV-CGKPMVEHVV-----DSVKKAG--I-DKIVTVVGHG-AEEVKEVLG 64 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhh-CEe-CCccHHHHHH-----HHHHhCC--C-CeEEEEeCCC-HHHHHHHhc
Confidence 56889999999995 4459942 233 3578876654 5554422 1 2455666543 345555543
No 118
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=52.88 E-value=11 Score=37.89 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=21.1
Q ss_pred EEEeccCCCCCCC----CCCCc-ccccCCCCchhHHHHH
Q 005946 409 MVLVVHNSEEGNE----CDPHS-VVSESTANKSLALLQT 442 (668)
Q Consensus 409 vvllAGG~GtRg~----~~pK~-~~i~l~s~ksl~~l~~ 442 (668)
+|+||||.|||.. .-||. ++ + .++++++...
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~--i-~g~pli~~~l 36 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIE--V-DGKPMIEWVI 36 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeE--E-CCEEHHHHHH
Confidence 5899999999942 23884 43 3 4578777654
No 119
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=51.12 E-value=17 Score=34.01 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=25.8
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRF 106 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f 106 (668)
.+..|+|.++||-.|.|+++.....|-..+
T Consensus 78 RviwGKVtR~HGnsGvVrAkF~~nLPp~A~ 107 (120)
T PTZ00041 78 RAIWGKITRPHGNSGVVRARFNKNLPPKAI 107 (120)
T ss_pred eEEEEEEEcccCCCcEEEEEeCCCCChHHc
Confidence 578899999999999999998888776544
No 120
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=49.35 E-value=19 Score=31.91 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.2
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPEL 104 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~ 104 (668)
.+..|+|.++||-.|.|+.+.....|-.
T Consensus 51 rviwGKItR~HGnsGvVrAkF~~nLP~~ 78 (87)
T PRK04337 51 NKYVGKIVRVHGNRGEVRARFKPGLPGQ 78 (87)
T ss_pred CEEEEEEEeeeCCCceEEEEECCCCChH
Confidence 4789999999999999999987776653
No 121
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=48.81 E-value=12 Score=36.45 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=46.0
Q ss_pred hccCCcEEEEccCCeEeEEEEEeccCC-CceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCCCE
Q 005946 180 RDLVGMRVVMKETGELVGTVVNVFNSG-ANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGRE 258 (668)
Q Consensus 180 ~DLIG~~V~d~~~G~~lG~V~dV~~~g-a~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~k~ 258 (668)
++|+|..||+..+|+.||.|.||.=.. ++-++-+... ++| -=.+..++|+-+ -+.+-.+.
T Consensus 5 ~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvn-------kgg--------wfh~h~~lp~~~----i~Sig~k~ 65 (176)
T COG3881 5 RELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVN-------KGG--------WFHKHCCLPVKN----IVSIGSKM 65 (176)
T ss_pred hhhcCCceEEecccccccceeeEEEecCCCeEEEEEEe-------cCc--------EEeeeeeeeecc----eeeeccce
Confidence 689999999988999999999986544 3445555431 111 123567899864 24556777
Q ss_pred EEEeCCC
Q 005946 259 MQITPPK 265 (668)
Q Consensus 259 I~V~~pe 265 (668)
|.+..|.
T Consensus 66 Imi~vp~ 72 (176)
T COG3881 66 IMIYVPY 72 (176)
T ss_pred EEEeccc
Confidence 7777776
No 122
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=47.34 E-value=20 Score=36.49 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=18.8
Q ss_pred EEEeccCCCCCCCCCCCcccccCCCCchhHHHHH
Q 005946 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQT 442 (668)
Q Consensus 409 vvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ 442 (668)
.++||.|.|||.. |+...+.|+|+++..
T Consensus 3 AIIlAAG~gsR~~------plT~~tpK~LlkV~g 30 (231)
T COG4750 3 AIILAAGLGSRFV------PLTQSTPKSLLKVNG 30 (231)
T ss_pred eEEEecccccccc------cccccCChHHHHhcC
Confidence 5788889999953 444456666666554
No 123
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=44.89 E-value=81 Score=28.40 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=48.7
Q ss_pred CccchhccCCcEEEEcc--CCe---EeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcc
Q 005946 175 GEFYTRDLVGMRVVMKE--TGE---LVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIV 249 (668)
Q Consensus 175 dEfY~~DLIG~~V~d~~--~G~---~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV 249 (668)
-..|+++|||+.|..-. +-. .=|.|++- | ...|+|+. +.++..||---..
T Consensus 8 ~~i~~hEliGl~vrVv~s~~~s~vGI~G~VVdE--T--kNtLvi~t--------------------~~~~~~VpK~~~v- 62 (95)
T COG1588 8 RNIIRHELIGLEVRVVRSTNPSYVGIEGRVVDE--T--KNTLVIDT--------------------GSREKVVPKDGAV- 62 (95)
T ss_pred CCcChHHhcCcEEEEEecCCCCccceeEEEEee--e--ccEEEEEC--------------------CCceEEEecCcEE-
Confidence 35899999999886321 112 34666654 2 23677763 2266777754333
Q ss_pred ceeecCCCEEEEeCCCCcccccCCcchhhhhHHH
Q 005946 250 PIVDMNGREMQITPPKGLLELNLRTDERSKKERR 283 (668)
Q Consensus 250 ~~VDle~k~I~V~~peGLLel~~~~~~~~~~~~r 283 (668)
-.++..++.. |+.+..+| +.+.++|.||..|
T Consensus 63 fef~~~~G~~-vkVdG~lL--~~rPE~Rlk~~~k 93 (95)
T COG1588 63 FEFEGPDGEK-VKVDGRLL--LGRPEDRLKKRWK 93 (95)
T ss_pred EEEEcCCCcE-EEEcchhh--hcCHHHHHhhhhc
Confidence 3566664444 44445565 6788999998544
No 124
>PF09939 DUF2171: Uncharacterized protein conserved in bacteria (DUF2171); InterPro: IPR018684 This family of various hypothetical prokaryotic proteins has no known function.
Probab=40.66 E-value=1.3e+02 Score=25.44 Aligned_cols=56 Identities=30% Similarity=0.428 Sum_probs=37.8
Q ss_pred CcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEEeC
Q 005946 184 GMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQITP 263 (668)
Q Consensus 184 G~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~k~I~V~~ 263 (668)
+|.|+. .+|..+|+|..+. | |-+.+.. ++++.+|..-+||.- +|..|| ++++.+..
T Consensus 5 hmeVi~-sdG~~vGtVDhve--G--d~IKLtk---------------~d~~~~g~HH~IPls--~V~~Vd--~~~V~L~~ 60 (67)
T PF09939_consen 5 HMEVIG-SDGVHVGTVDHVE--G--DRIKLTK---------------DDSGHDGQHHYIPLS--WVDSVD--DDKVHLSK 60 (67)
T ss_pred CCEEEe-CCCCEEEEEeeEe--C--CEEEEec---------------cCCCCCCcceEEehh--HheeEc--CCEEEEcC
Confidence 799984 6799999999995 3 4433321 112236889999985 677776 55666654
No 125
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=40.14 E-value=25 Score=40.36 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=58.2
Q ss_pred ccEEEeCCccchHHHHHHHHH-----CCCCCCCCCcEEEEecCC---cccccCCCCccccceeccCCCCCcccccCCCch
Q 005946 459 MPLVLVLPALEMQMLEKLFLD-----NDHFAFDSKKVWFLEEEK---LPIVSRSPTEQNKFKILMKSPWETLQAPVGSGG 530 (668)
Q Consensus 459 iPl~IMTS~~t~~~T~~~f~~-----n~~FGl~~~qV~~f~Q~~---lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Gg 530 (668)
+-+=+..|....+.-++.+++ .+.||.. =+|.|=.|.. -.|++.+ ...+.++.+++..-|.|||.
T Consensus 201 ~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~-f~IsfS~Qk~sTDTIAv~~d------N~pFR~~dG~LlFRPgGHGA 273 (513)
T PF14134_consen 201 ANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVK-FEISFSEQKPSTDTIAVDPD------NTPFRNEDGSLLFRPGGHGA 273 (513)
T ss_pred EEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCce-EEEEecccCCCCCeeEECCC------CCccCCCCCCEEeCCCcchH
Confidence 334445577655444444443 1223432 2566666653 3456666 57788889999999999996
Q ss_pred HhHHHhhCchHHHHHHcCceEEEEEcCCcccc
Q 005946 531 VFSLLSSHNIIKNLDELGVEYIQICTANPRNA 562 (668)
Q Consensus 531 v~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~ 562 (668)
++ +.|.+..-.-|+|=|+||+..
T Consensus 274 Li---------eNLN~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 274 LI---------ENLNDLDADIIFIKNIDNVVP 296 (513)
T ss_pred HH---------hhhccccCCEEEEeCccccCC
Confidence 54 456666788999999999987
No 126
>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]
Probab=39.91 E-value=87 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 183 IG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
+|..|+| .+++.+|+|.|||-.=.+..+.|+.
T Consensus 27 l~~~V~~-~~~k~IG~V~dVfGPv~~PY~~Vkp 58 (98)
T COG3277 27 LNAPVYD-ANLKRIGKVVDVFGPVDEPYILVKP 58 (98)
T ss_pred CCCeeEe-cCCCEEEEEEEEEccCCCCEEEEec
Confidence 3889996 6788899999999877777777874
No 127
>COG3881 PRC-barrel domain containing protein [General function prediction only]
Probab=39.54 E-value=32 Score=33.70 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=45.5
Q ss_pred EEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEec---cCCCceEEEE
Q 005946 141 WILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHV 213 (668)
Q Consensus 141 ~ivkf~gId~re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~---~~ga~DlL~V 213 (668)
..+.+..|-++-+ .+.-+++|.+..-...+. +..++..|++..+.+|+.||.|.||+ .+|---=|++
T Consensus 51 ~~lp~~~i~Sig~----k~Imi~vp~~~~~~~~ns--~~ye~m~mk~~lt~dG~iLGmveDVyFdek~gkIvgyev 120 (176)
T COG3881 51 CCLPVKNIVSIGS----KMIMIYVPYKGSFIRFNS--FTYEIMNMKVILTYDGTILGMVEDVYFDEKTGKIVGYEV 120 (176)
T ss_pred eeeeecceeeecc----ceEEEeccccceecccCc--hhhHhhcCceEeccCCcEeeeeeEEEEeccCCcEEEEEe
Confidence 3566777766654 344677877776555555 56677788888778899999999996 3444334444
No 128
>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed
Probab=39.43 E-value=57 Score=27.77 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCcEEEEccCCeEeEEEEEeccCCCceEEEEEec
Q 005946 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 216 (668)
Q Consensus 183 IG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~ 216 (668)
+|..|++ ++++.+|+|.||+-.=.+..+.|+..
T Consensus 26 ~n~~V~~-~~~~~IGkV~dIfGPV~~pY~~Vk~~ 58 (73)
T PRK13149 26 IGSVVYD-KKLKKIGKVVDVFGPVKEPYVLVKPD 58 (73)
T ss_pred CCCEeEC-CCCCEeEEEEEEECCCCCcEEEEEeC
Confidence 4778985 78899999999998777788888763
No 129
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=39.16 E-value=5e+02 Score=28.50 Aligned_cols=128 Identities=11% Similarity=0.147 Sum_probs=74.9
Q ss_pred cccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCC-----------CC
Q 005946 523 QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKH-----------SE 591 (668)
Q Consensus 523 ~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~-----------~~ 591 (668)
-+|.|.||-.-.+++ ...+-.-..+++.|-|-+..-.-+-++-.|...+..+...+++-+.. |.
T Consensus 86 ~~plGtaGgLyhFrd-----qIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 86 DNPLGTAGGLYHFRD-----QILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred CCCCCcccceeehhh-----HHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 578898776554543 45555677999999887766444667888888888876665543311 11
Q ss_pred --c----------------cc-ceeeeHHHHHHHhhcccCc-cccccccCCCccccCCCCcceeccCCCCeEEEEEEEec
Q 005946 592 --E----------------RF-NTMLSMNVMKKLTNHINKL-EFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS 651 (668)
Q Consensus 592 --E----------------~~-~h~fs~~fl~~~~~~~~~L-~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD 651 (668)
| +| .++|+-+-++.+.+.+.+- ...-.-|..|-. .|.-..-+.||+-|+.
T Consensus 161 t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l----------~~g~~d~irLeqDvls 230 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLL----------QPGPADFIRLEQDVLS 230 (407)
T ss_pred cCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhccccc----------CCCccceEEeechhhh
Confidence 1 12 2778988887776654321 001112222221 2222234899998886
Q ss_pred ccCCCCCCceEEEEec
Q 005946 652 CLNACSLDKVCVMEIT 667 (668)
Q Consensus 652 ~f~~~~~~~~~v~ev~ 667 (668)
-+ |...+....|.+
T Consensus 231 pL--ag~k~lY~y~t~ 244 (407)
T KOG1460|consen 231 PL--AGSKQLYAYETT 244 (407)
T ss_pred hh--cCCCceEEEecc
Confidence 55 443367666654
No 130
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=37.51 E-value=1.2e+02 Score=30.71 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=75.1
Q ss_pred EEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccc-hHHHHHHHHHCCCCCCCC
Q 005946 409 MVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE-MQMLEKLFLDNDHFAFDS 487 (668)
Q Consensus 409 vvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t-~~~T~~~f~~n~~FGl~~ 487 (668)
+|++|||.++|.+ .|.+ .++ .++++++... +.+... ...-.++|.|+... ++.+.+++... |.
T Consensus 2 aiIlA~G~S~R~~--~K~l-l~l-~Gkpli~~~i-----~~l~~~--~~~~~ivVv~~~~~~~~~i~~~~~~~---~v-- 65 (233)
T cd02518 2 AIIQARMGSTRLP--GKVL-KPL-GGKPLLEHLL-----DRLKRS--KLIDEIVIATSTNEEDDPLEALAKKL---GV-- 65 (233)
T ss_pred EEEeeCCCCCCCC--CCcc-ccc-CCccHHHHHH-----HHHHhC--CCCCeEEEECCCCcccHHHHHHHHHc---CC--
Confidence 4789999999963 4742 222 4688876554 444432 11125667776553 25666766532 21
Q ss_pred CcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHH
Q 005946 488 KKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSM 567 (668)
Q Consensus 488 ~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~ 567 (668)
. ++... . + +....+ +..+...+.+++.+...|.+++ +|-
T Consensus 66 ---~--------~v~~~-------~------~----------~~l~~~-----~~~~~~~~~d~vli~~~D~P~i--~~~ 104 (233)
T cd02518 66 ---K--------VFRGS-------E------E----------DVLGRY-----YQAAEEYNADVVVRITGDCPLI--DPE 104 (233)
T ss_pred ---e--------EEECC-------c------h----------hHHHHH-----HHHHHHcCCCEEEEeCCCCCCC--CHH
Confidence 1 11111 0 0 111111 1223334678999999999999 444
Q ss_pred HHHHH----HHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 568 FLGFV----KSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 568 flG~~----~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
.+-.+ ..++.++..-...+. .|-=--..+|+..++.++.+
T Consensus 105 ~i~~li~~~~~~~~~~~~~~~~~g-~Pv~~~~~~~~~~~~~~l~~ 148 (233)
T cd02518 105 IIDAVIRLFLKSGADYTSNTLPRT-YPDGLDVEVFTRDALERAAA 148 (233)
T ss_pred HHHHHHHHHHhCCCCEEecCCCCC-CCCceEEEEEEHHHHHHHHH
Confidence 44333 345666664111122 12111146799988887754
No 131
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=35.72 E-value=35 Score=30.75 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCeEEEEEEeccceeeeeEEEEeccCCccc
Q 005946 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPEL 104 (668)
Q Consensus 75 ~~~v~IG~I~~~hGlkGeVkV~~~td~pe~ 104 (668)
...+..|+|.++||-.|-|+++.....|-.
T Consensus 57 k~r~iwGkV~r~HGnsGvVrAkF~~nLP~~ 86 (95)
T PF01247_consen 57 KGRVIWGKVTRPHGNSGVVRAKFKKNLPPQ 86 (95)
T ss_dssp CSEEEEEEEEEESTTTTEEEEEESS--STT
T ss_pred cEeEEEEEEEeEEcCCCEEEEEeCCCCChH
Confidence 456889999999999999999988777754
No 132
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=30.69 E-value=43 Score=30.35 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=29.1
Q ss_pred cccccccccC-CCHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005946 309 QQHVFHGFRF-GEKYQTSLLANHIVGINSKLLQQALQN 345 (668)
Q Consensus 309 Q~HL~~~~~~-l~~~ek~~L~~ql~~id~~~l~~a~~~ 345 (668)
|-+||+-|-. =+.++|+.|+++|+.+|.....+.++.
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~~ 96 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQE 96 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 4456655543 579999999999999999988887764
No 133
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=30.37 E-value=1.3e+02 Score=34.13 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=72.4
Q ss_pred CeEEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
.+.+|+||-|+|||- +.-||.+ -...++++++--. +....++.. .+-++ =..-.+..++-+.+..
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVL--H~vaGkpMl~hVi-----~~a~~l~~~-~i~vV---vGh~ae~V~~~~~~~~--- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVL--HPVAGKPMLEHVI-----DAARALGPD-DIVVV---VGHGAEQVREALAERD--- 67 (460)
T ss_pred CceEEEEecCCCccccCCCcccc--hhccCccHHHHHH-----HHHhhcCcc-eEEEE---EcCCHHHHHHHhcccc---
Confidence 468899999999995 5559953 1125777654322 333333211 12222 2345566666665432
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCce-EEEEEcCCccccc
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVE-YIQICTANPRNAI 563 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~-yi~v~~vDN~l~~ 563 (668)
++.|+.|.. |-|.|.-..+. ++ ....+.+ .+.|.+=|-+|..
T Consensus 68 ----~v~~v~Q~e---------------------------qlGTgHAV~~a-----~~-~l~~~~~g~vLVl~GD~PLit 110 (460)
T COG1207 68 ----DVEFVLQEE---------------------------QLGTGHAVLQA-----LP-ALADDYDGDVLVLYGDVPLIT 110 (460)
T ss_pred ----CceEEEecc---------------------------cCChHHHHHhh-----hh-hhhcCCCCcEEEEeCCcccCC
Confidence 566676654 22334222211 22 2233455 6677777777774
Q ss_pred cCH--HHHHHHHHcCCcEEEEEeecc
Q 005946 564 GNS--MFLGFVKSCGADIGFQISEYA 587 (668)
Q Consensus 564 ~DP--~flG~~~~~~~d~~~kvV~k~ 587 (668)
.+. .++.++...++.++.-+..-.
T Consensus 111 ~~TL~~L~~~~~~~~~~~tvLt~~~~ 136 (460)
T COG1207 111 AETLEELLAAHPAHGAAATVLTAELD 136 (460)
T ss_pred HHHHHHHHHhhhhcCCceEEEEEEcC
Confidence 222 467788777888877766555
No 134
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=67 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.1
Q ss_pred CeEEEEEEeccceeeeeEEEEeccCCccc
Q 005946 76 DFVDVGYVYSVHGLQGEISVKPSTDFPEL 104 (668)
Q Consensus 76 ~~v~IG~I~~~hGlkGeVkV~~~td~pe~ 104 (668)
..+.=|+|+++||-.|.|+++..-..|..
T Consensus 57 G~Vi~G~V~R~HGnsGaVrarF~~~LP~q 85 (100)
T COG2451 57 GRVIKGKVVRTHGNSGAVRARFERNLPGQ 85 (100)
T ss_pred CcEEEEEEEEecCCcceEEEEecCCCCch
Confidence 48889999999999999999876555543
No 135
>PLN02917 CMP-KDO synthetase
Probab=28.56 E-value=1.7e+02 Score=31.37 Aligned_cols=60 Identities=7% Similarity=0.018 Sum_probs=36.2
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++++|++|+|.++|.+ .|.+ .++ .++++++... +.+.+.+ .+..++.. ...+.+.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~--~K~L-~~i-~GkPLL~~vi-----~~a~~~~---~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE--GKPL-VHI-LGKPMIQRTW-----ERAKLAT---TLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC--CCCe-eeE-CCEEHHHHHH-----HHHHcCC---CCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999953 3732 222 4788876655 4544322 12333433 235667777764
No 136
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=28.25 E-value=1.3e+02 Score=30.26 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=48.5
Q ss_pred cCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCCCEEEE
Q 005946 182 LVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNGREMQI 261 (668)
Q Consensus 182 LIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~k~I~V 261 (668)
.+|-.|. .=|+|++|.+...+-.+||..- .++++|+|..+++. ... ++=.++.|+.-++.+.+.|+|
T Consensus 46 y~G~~Vr------~GG~I~~v~N~~~~T~lEVv~~----PLd~~grP~~~~~s--~GR-Fla~~~gFLDP~~y~Gr~VTV 112 (182)
T TIGR00752 46 YVGQTAR------FGGKVVNVTNLANQTKLEIASL----PLDSIAKPFVELQS--DGR-FIAYFNGFLDPVNLRERYVTV 112 (182)
T ss_pred cCCCEEE------ECCEEEEEEECCCceEEEEEEc----ccCCCCCcCCCCCC--CCE-EEEEeCCCcChhhcCCCEEEE
Confidence 4577776 2389999999888889999632 45677887764332 233 556788999889998888887
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=26.55 E-value=53 Score=36.91 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=43.3
Q ss_pred EEEEeccCCccccccCCCceEEEEeecCcc-eeEEEEEEEe-eeeC-CCceEEEEecCCCCHHHHhcccCCeEEEeCCCC
Q 005946 93 ISVKPSTDFPELRFTTPGTRWLRQQVLGRE-TIREVKLIDG-REHP-GQKSWILTFEGIDTVEQARPLVGSTLLAREGDR 169 (668)
Q Consensus 93 VkV~~~td~pe~~f~~~~~~~l~~~~~g~~-~~~~v~v~~~-r~~~-~~~~~ivkf~gId~re~Ae~L~G~~l~v~~~dl 169 (668)
++.-..|..|+..|...+++|-+....+-. ...+++++.. |.-. ..+++| =+|=.|.++-..|.+..+.|||++-
T Consensus 456 eRMViItGppeaqfKAQgrifgKikEenf~~PkeevklethirVPs~~aGRvI--GKGGktVnELQnlt~AeV~vPrdqt 533 (584)
T KOG2193|consen 456 ERMVIITGPPEAQFKAQGRIFGKIKEENFFLPKEEVKLETHIRVPSSAAGRVI--GKGGKTVNELQNLTSAEVVVPRDQT 533 (584)
T ss_pred eeEEEecCChHHHHhhhhhhhhhhhhhccCCchhhheeeeeeeccchhhhhhh--ccccccHHHHhccccceEEccccCC
Confidence 344455677777787777776432210000 0112333221 1110 112222 3577889999999999999999996
Q ss_pred CC
Q 005946 170 PE 171 (668)
Q Consensus 170 p~ 171 (668)
|.
T Consensus 534 pd 535 (584)
T KOG2193|consen 534 PD 535 (584)
T ss_pred CC
Confidence 53
No 138
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.47 E-value=1.1e+02 Score=28.81 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=30.7
Q ss_pred eEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 407 vavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
-|+|.+-||.|| + -++... -.+.+++...++|++++.-..--+...++++
T Consensus 55 da~I~lPGG~GT--------l----------~El~~~----~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~ 104 (133)
T PF03641_consen 55 DAFIALPGGIGT--------L----------DELFEA----LTLMQLGRHNKVPIILLNIDGFWDPLLEFLD 104 (133)
T ss_dssp SEEEEES-SHHH--------H----------HHHHHH----HHHHHTTSSTS-EEEEEECGGCCHHHHHHHH
T ss_pred CEEEEEecCCch--------H----------HHHHHH----HHHHhhccccCCCEEEeCCcchHHHHHHHHH
Confidence 589999999998 1 122211 1223344456679999998766777777774
No 139
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.85 E-value=34 Score=35.82 Aligned_cols=81 Identities=7% Similarity=0.184 Sum_probs=49.0
Q ss_pred HhchhhhccCCeEEEEeccCCCCCCCCCCC-c----ccccCCCCc------hhHHHHHHhhhhHHHHhhcCCCcccEEEe
Q 005946 396 KKGNHLVSEGKKAMVLVVHNSEEGNECDPH-S----VVSESTANK------SLALLQTLLSDDQRFVKIENRASMPLVLV 464 (668)
Q Consensus 396 ~~Gl~~i~~gkvavvllAGG~GtRg~~~pK-~----~~i~l~s~k------sl~~l~~ll~~~e~i~~~~~~~~iPl~IM 464 (668)
..+.++-++|++..+++.||.++.+...+. + ...+++... ++-=++...+ ..++.. .-+++|.
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~-a~~i~~-----~~~~iIV 144 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVR-TRKVFD-----TNDFIII 144 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHH-HHHHhC-----CCCEEEE
Confidence 468999999999999999998755443343 1 122222221 1111221110 122322 1268999
Q ss_pred CCccchHHHHHHHHHCCCCCC
Q 005946 465 LPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 465 TS~~t~~~T~~~f~~n~~FGl 485 (668)
||........-+|++ +|+
T Consensus 145 Tq~fHm~RA~~ia~~---~Gi 162 (239)
T PRK10834 145 TQRFHCERALFIALH---MGI 162 (239)
T ss_pred CCHHHHHHHHHHHHH---cCC
Confidence 999999999999886 476
No 140
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=2.3e+02 Score=25.61 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=45.8
Q ss_pred hhHHHhhhhHHhHhhhHHHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 005946 279 KKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQAL 343 (668)
Q Consensus 279 ~~~~r~~e~~e~~k~~~~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~ 343 (668)
...++.+.|+.+ +=.+++.-+.-.+.+ ++|++|+++|+..|..=|+.-|.++++=+.
T Consensus 12 d~~~~RL~~rsr-RGmrElDlil~~Fae-------~~~~~lsd~el~~f~~LLe~~D~dL~~Wi~ 68 (94)
T COG2938 12 DARKARLRWRSR-RGMRELDLILGPFAE-------KEFDSLSDEELDEFERLLECEDNDLFNWIM 68 (94)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHH-------HHHhhCCHHHHHHHHHHHcCCcHHHHHHHh
Confidence 356778999998 777777777776664 378899999999999999999988776544
No 141
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=21.18 E-value=2.7e+02 Score=28.51 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=34.5
Q ss_pred ccCCeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchH
Q 005946 403 SEGKKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQ 471 (668)
Q Consensus 403 ~~gkvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~ 471 (668)
+..+|+.|+||-|.|+|-+ .+|++ .++ .++++..... ++.+.. +-=-+++.|+....+
T Consensus 2 ~~~~v~~VvLAAGrssRmG-~~KlL-ap~-~g~plv~~~~-----~~a~~a---~~~~vivV~g~~~~~ 59 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-QPKLL-APL-DGKPLVRASA-----ETALSA---GLDRVIVVTGHRVAE 59 (199)
T ss_pred CCcceEEEEEcccccccCC-Cccee-ccc-CCCcHHHHHH-----HHHHhc---CCCeEEEEeCcchhh
Confidence 3468999999999999933 67743 122 5666654443 444321 111466777766333
No 142
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.38 E-value=1.4e+02 Score=26.55 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=27.9
Q ss_pred hhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEE
Q 005946 179 TRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVM 214 (668)
Q Consensus 179 ~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~ 214 (668)
+.|.+|+.|.-..+|. +|+|++|-.--.++++++-
T Consensus 7 V~~~VG~avrYvnTgT-vgrV~dIkkdEdG~~WV~L 41 (97)
T COG4014 7 VNDKVGDAVRYVNTGT-VGRVVDIKKDEDGDIWVVL 41 (97)
T ss_pred hhhhhcceEEEeecCc-eeeEEEEEeecCCceEEEE
Confidence 4566999998777786 8999999866677888764
Done!