Query 005946
Match_columns 668
No_of_seqs 310 out of 1722
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqc_A UDP-N-acetylglucosamine 100.0 9.5E-71 3.3E-75 613.3 28.8 343 297-667 6-412 (486)
2 1jv1_A Glcnac1P uridyltransfer 100.0 2.5E-66 8.6E-71 579.8 30.5 342 298-667 4-398 (505)
3 3oc9_A UDP-N-acetylglucosamine 100.0 4.8E-66 1.6E-70 560.1 23.8 257 392-667 21-328 (405)
4 3r3i_A UTP--glucose-1-phosphat 100.0 1.1E-60 3.6E-65 529.5 18.0 325 279-667 32-408 (528)
5 3ogz_A UDP-sugar pyrophosphory 100.0 3.5E-59 1.2E-63 524.7 25.9 328 295-667 7-426 (630)
6 3gue_A UTP-glucose-1-phosphate 100.0 1.8E-56 6.3E-61 492.5 17.5 243 397-667 69-368 (484)
7 2oeg_A UTP-glucose-1-phosphate 100.0 1.4E-47 4.8E-52 426.9 19.8 245 396-667 67-372 (505)
8 2icy_A Probable UTP-glucose-1- 100.0 2.7E-45 9.3E-50 406.5 18.1 260 369-667 48-352 (469)
9 2i5k_A UTP--glucose-1-phosphat 100.0 9.6E-45 3.3E-49 404.1 21.6 320 285-667 2-369 (488)
10 3h9n_A Ribosome maturation fac 100.0 5.4E-43 1.8E-47 342.4 22.2 173 77-271 2-175 (177)
11 2f1l_A 16S rRNA processing pro 100.0 1E-42 3.6E-47 342.7 20.8 166 75-267 18-187 (187)
12 2qgg_A 16S rRNA-processing pro 100.0 2.3E-42 7.9E-47 339.3 19.3 173 71-267 5-182 (182)
13 2dyi_A Probable 16S rRNA-proce 100.0 6.8E-40 2.3E-44 316.1 17.8 156 76-269 2-162 (162)
14 3st8_A Bifunctional protein GL 96.5 0.0082 2.8E-07 66.6 10.2 136 404-587 10-151 (501)
15 3oam_A 3-deoxy-manno-octuloson 95.4 0.12 4E-06 52.0 12.1 124 406-584 2-128 (252)
16 1h7e_A 3-deoxy-manno-octuloson 94.8 0.27 9.3E-06 48.4 12.8 123 406-585 2-128 (245)
17 3k8d_A 3-deoxy-manno-octuloson 94.5 0.22 7.7E-06 50.7 11.6 125 406-584 18-144 (264)
18 4ecm_A Glucose-1-phosphate thy 94.0 0.097 3.3E-06 52.9 7.6 132 405-585 23-159 (269)
19 3tqd_A 3-deoxy-manno-octuloson 94.0 0.39 1.3E-05 48.7 12.0 122 406-584 9-136 (256)
20 1eys_H Photosynthetic reaction 94.0 0.11 3.8E-06 53.0 7.8 65 179-265 148-216 (259)
21 3pnn_A Conserved domain protei 93.0 0.23 7.8E-06 51.4 8.5 78 406-496 5-83 (303)
22 2qh5_A PMI, ALGA, mannose-6-ph 92.9 0.18 6.1E-06 52.2 7.5 64 406-479 4-72 (308)
23 3q80_A 2-C-methyl-D-erythritol 92.8 0.2 6.8E-06 50.0 7.4 65 405-478 6-71 (231)
24 1qwj_A Cytidine monophospho-N- 92.4 1.2 4E-05 43.7 12.3 126 406-584 3-132 (229)
25 3brk_X Glucose-1-phosphate ade 92.0 1 3.6E-05 48.2 12.4 142 406-584 12-161 (420)
26 2xwl_A 2-C-methyl-D-erythritol 91.9 0.21 7.3E-06 48.3 6.2 62 406-477 2-65 (223)
27 1vic_A 3-deoxy-manno-octuloson 91.9 0.82 2.8E-05 45.7 10.7 127 406-586 2-130 (262)
28 1fxo_A Glucose-1-phosphate thy 91.7 0.26 8.8E-06 50.8 6.9 69 406-485 2-75 (293)
29 1lvw_A Glucose-1-phosphate thy 90.8 0.41 1.4E-05 49.4 7.3 68 407-485 4-76 (295)
30 3d5n_A Q97W15_sulso; NESG, SSR 90.7 0.12 4.1E-06 49.8 2.9 138 406-607 2-142 (197)
31 1tzf_A Glucose-1-phosphate cyt 90.5 0.33 1.1E-05 48.1 6.1 142 407-582 3-155 (259)
32 1mc3_A Glucose-1-phosphate thy 90.5 0.28 9.6E-06 50.7 5.7 68 407-485 4-76 (296)
33 3f1c_A Putative 2-C-methyl-D-e 90.4 0.47 1.6E-05 47.2 7.1 128 406-580 3-138 (246)
34 3rsb_A Adenosylcobinamide-phos 90.1 0.31 1.1E-05 46.3 5.3 62 408-480 2-63 (196)
35 2vsh_A TARI, 2-C-methyl-D-eryt 89.9 0.43 1.5E-05 46.4 6.3 64 407-479 3-68 (236)
36 3htr_A Uncharacterized PRC-bar 89.5 0.76 2.6E-05 41.4 7.0 75 176-268 14-91 (120)
37 3juk_A UDP-glucose pyrophospho 89.5 0.39 1.3E-05 48.5 5.8 62 407-480 3-69 (281)
38 1vgw_A 4-diphosphocytidyl-2C-m 89.1 0.44 1.5E-05 46.3 5.6 64 405-479 5-69 (231)
39 1ezi_A CMP-N-acetylneuraminic 89.0 0.7 2.4E-05 45.0 7.0 126 406-587 4-137 (228)
40 2wee_A MOBA-related protein; u 89.0 0.54 1.9E-05 44.3 6.0 143 406-607 5-150 (197)
41 1yp2_A Glucose-1-phosphate ade 88.8 2.3 7.9E-05 45.8 11.6 143 407-581 21-168 (451)
42 1vpa_A 2-C-methyl-D-erythritol 87.5 0.45 1.5E-05 46.4 4.5 55 406-469 13-68 (234)
43 2y6p_A 3-deoxy-manno-octuloson 87.4 0.79 2.7E-05 44.6 6.2 56 406-478 2-58 (234)
44 1i52_A 4-diphosphocytidyl-2-C- 87.3 0.56 1.9E-05 45.9 5.1 53 406-467 7-60 (236)
45 4fce_A Bifunctional protein GL 87.2 0.63 2.2E-05 50.1 5.9 62 406-479 8-71 (459)
46 2waw_A MOBA relate protein; un 87.2 0.58 2E-05 44.1 5.0 143 406-607 5-150 (199)
47 2xme_A CTP-inositol-1-phosphat 86.4 1.7 5.7E-05 42.4 8.0 60 406-478 18-77 (232)
48 2yc3_A 2-C-methyl-D-erythritol 86.2 0.74 2.5E-05 44.6 5.3 55 406-469 4-59 (228)
49 2x65_A Mannose-1-phosphate gua 86.1 0.59 2E-05 49.2 4.8 64 408-479 3-71 (336)
50 3ngw_A Molybdopterin-guanine d 85.4 0.72 2.5E-05 45.1 4.7 133 407-608 1-140 (208)
51 2px7_A 2-C-methyl-D-erythritol 84.0 1 3.4E-05 44.5 5.1 34 406-442 25-59 (236)
52 2v0h_A Bifunctional protein GL 83.1 1.3 4.4E-05 47.7 5.9 63 405-479 4-68 (456)
53 2cu2_A Putative mannose-1-phos 83.0 0.62 2.1E-05 49.0 3.2 60 407-474 3-67 (337)
54 4evw_A Nucleoside-diphosphate- 82.1 0.8 2.7E-05 46.1 3.5 59 409-479 2-65 (255)
55 1jyk_A LICC protein, CTP:phosp 81.7 1.2 3.9E-05 44.7 4.5 62 406-478 25-90 (254)
56 2ux8_A Glucose-1-phosphate uri 81.1 1.4 4.7E-05 44.9 4.9 62 406-479 14-80 (297)
57 1pm3_A MTH1895; unknown functi 80.8 2.7 9.4E-05 36.3 6.0 37 176-213 20-60 (97)
58 1e5k_A Molybdopterin-guanine d 80.5 1.4 4.8E-05 42.4 4.5 51 406-468 6-57 (201)
59 1hm9_A GLMU, UDP-N-acetylgluco 80.0 5.6 0.00019 42.9 9.6 59 408-477 13-72 (468)
60 2wjn_H Reaction center protein 79.0 3.1 0.00011 42.3 6.5 58 180-261 150-210 (258)
61 1rzh_H Reaction center protein 78.8 3.3 0.00011 42.1 6.6 57 180-261 146-205 (260)
62 1w55_A ISPD/ISPF bifunctional 77.7 2.2 7.6E-05 45.6 5.4 52 406-466 3-55 (371)
63 2e3d_A UTP--glucose-1-phosphat 76.6 3.1 0.00011 42.3 6.0 62 406-479 8-74 (302)
64 2pa4_A UTP-glucose-1-phosphate 76.3 2 6.8E-05 44.5 4.4 60 407-478 13-77 (323)
65 2e8b_A Probable molybdopterin- 75.5 1.5 5.2E-05 42.0 3.1 51 406-469 14-65 (201)
66 3j21_c 50S ribosomal protein L 73.0 2.9 9.9E-05 35.7 3.7 53 138-215 19-71 (87)
67 1sqr_A 50S ribosomal protein L 72.6 2.7 9.1E-05 36.4 3.5 27 138-164 19-45 (95)
68 4fcu_A 3-deoxy-manno-octuloson 71.9 27 0.00093 34.9 11.5 123 407-584 2-129 (253)
69 2ggo_A 401AA long hypothetical 67.7 5.3 0.00018 42.1 5.3 58 408-480 2-64 (401)
70 4a18_H RPL35A; ribosome, eukar 66.9 4.4 0.00015 36.1 3.7 58 139-215 33-91 (113)
71 2dpw_A Hypothetical protein TT 64.9 6.7 0.00023 38.3 5.1 49 406-466 2-54 (232)
72 3izc_j 60S ribosomal protein R 61.1 4.1 0.00014 36.0 2.4 30 138-167 25-55 (107)
73 3iz5_j 60S ribosomal protein L 59.8 4.9 0.00017 35.8 2.6 60 138-215 29-89 (111)
74 1sqr_A 50S ribosomal protein L 41.3 11 0.00038 32.6 1.9 30 77-106 51-80 (95)
75 3j21_c 50S ribosomal protein L 38.6 16 0.00055 31.1 2.4 27 78-104 52-78 (87)
76 4a18_H RPL35A; ribosome, eukar 37.1 18 0.00062 32.2 2.6 31 77-107 71-101 (113)
77 3iz5_j 60S ribosomal protein L 35.6 18 0.00061 32.2 2.3 32 77-108 69-100 (111)
78 2hvy_B GAR1, small nucleolar R 33.2 45 0.0015 29.3 4.5 32 183-215 33-64 (104)
79 3izc_j 60S ribosomal protein R 32.1 14 0.00048 32.7 1.0 31 77-107 65-95 (107)
80 2ey4_C Small nucleolar RNP sim 29.9 42 0.0015 28.1 3.6 32 183-215 33-64 (82)
81 3u28_C H/ACA ribonucleoprotein 28.9 1.6E+02 0.0055 26.2 7.3 33 183-216 53-85 (114)
82 2kk4_A Uncharacterized protein 24.8 2.8E+02 0.0096 23.2 7.5 52 181-263 5-57 (95)
No 1
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=9.5e-71 Score=613.32 Aligned_cols=343 Identities=18% Similarity=0.294 Sum_probs=295.0
Q ss_pred HHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcC-CHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCC
Q 005946 297 LIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGI-NSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISG 375 (668)
Q Consensus 297 ~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~i-d~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~ 375 (668)
..+++++|+++||+|||+||++|+++||++|++||.++ |+..++++++.....++ +. +....++|+|.
T Consensus 6 ~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~~d~~~l~~~~~~~~~~~~----~~-------~~~~~i~p~p~ 74 (486)
T 2yqc_A 6 QQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQ----TN-------STSRNFTQLPN 74 (486)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTC---------------CCCEECCCG
T ss_pred HHHHHHHHHHcCcHHHhhhhccCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccc----cc-------cccccccCCCh
Confidence 46889999999999999999999999999999999999 99988877765432211 11 00123778887
Q ss_pred CCCCCC--CcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHH
Q 005946 376 EGSLGP--CARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFV 451 (668)
Q Consensus 376 ~~~l~~--~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~ 451 (668)
+ .+.+ ..+.+++ .+|++.|+++|++||||+|+||||+||| |+..|| ++++.++++++||++++ +++.
T Consensus 75 ~-~~~~~~~~~~~~~---~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~-----e~l~ 145 (486)
T 2yqc_A 75 E-QTASTLDLSKDIL---QNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQA-----EKIL 145 (486)
T ss_dssp G-GEEETTTSCHHHH---HHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHH-----HHHH
T ss_pred h-hccccccCChHHH---HHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHH-----HHHH
Confidence 6 3321 2233344 4799999999999999999999999999 666699 57899999999999998 6666
Q ss_pred hh--------c--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccc-eeccCCCCC
Q 005946 452 KI--------E--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKF-KILMKSPWE 520 (668)
Q Consensus 452 ~~--------~--~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~g-kill~~~~~ 520 (668)
++ + +.+.||||||||+.||+.|++||++|+|||++.++|+||+|+++||++.+ | ++++++++.
T Consensus 146 ~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~d------g~~i~l~~~~~ 219 (486)
T 2yqc_A 146 KIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQ------GNKILLELKNS 219 (486)
T ss_dssp HHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCTT------SSSBCEEETTE
T ss_pred HHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcCC------CCccccCCCCc
Confidence 55 2 45789999999999999999999999999999999999999999999987 7 999999999
Q ss_pred cccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCC---------
Q 005946 521 TLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHS--------- 590 (668)
Q Consensus 521 i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~--------- 590 (668)
++|+|+||||+|.+|+++|+|++|.++|++|++|+|+||+|| .+||.|||||+.++++|+++||+|+.+.
T Consensus 220 i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~ 299 (486)
T 2yqc_A 220 ICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD 299 (486)
T ss_dssp ECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE
T ss_pred cccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE
Confidence 999999999999999999999999999999999999999999 5999999999999999999999996221
Q ss_pred --C--------------------cc------------cceeeeHHHHHH-HhhcccC---ccccccccCCCccccCCCCc
Q 005946 591 --E--------------------ER------------FNTMLSMNVMKK-LTNHINK---LEFYATPKLNSHVEKVDKEF 632 (668)
Q Consensus 591 --~--------------------E~------------~~h~fs~~fl~~-~~~~~~~---L~~H~a~Kki~~~d~~~~~~ 632 (668)
+ ++ ++|+|+++||++ +.+.... ||||+|+|||||+|. .+|
T Consensus 300 ~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~--~~g 377 (486)
T 2yqc_A 300 QDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNL--ENG 377 (486)
T ss_dssp TTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECT--TTC
T ss_pred ecCCCEEEEEEecCCHHHhhcccccccccccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCcccc--ccC
Confidence 0 01 359999999999 5554446 999999999999852 357
Q ss_pred ceeccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 633 IDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 633 ~~v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+.++|++|||+|||+||||+|+++++++++++||.
T Consensus 378 ~~~~p~~pn~~klE~~~~d~~~~~~l~~~~~~~V~ 412 (486)
T 2yqc_A 378 EFYKPTEPNGIKLEQFIFDVFPSVELNKFGCLEVD 412 (486)
T ss_dssp CEECCSSCCEEEEECCGGGGGGGSCGGGEEEEEEC
T ss_pred eeccCCCCCeeeeeehHhhHHhhcccCceEEEEEC
Confidence 89999999999999999999999988899999996
No 2
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=2.5e-66 Score=579.77 Aligned_cols=342 Identities=20% Similarity=0.294 Sum_probs=289.2
Q ss_pred HHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhhhhhhhcccccCCCCC
Q 005946 298 IAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNATKAELMISSLKISGEG 377 (668)
Q Consensus 298 ~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~ 377 (668)
.+|+++|+++||+|||+||++|+++||++|++||.++|+..+.++++...+..+..+.+.. ..+.++|+|.+
T Consensus 4 ~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~d~~~~~~~~~~~~~~~~~s~~~~~-------~~~~i~p~p~~- 75 (505)
T 1jv1_A 4 NDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKN-------VDARMEPVPRE- 75 (505)
T ss_dssp HHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC------------------CCBCCCGG-
T ss_pred HHHHHHHHHcCcHHHHhhhhcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhhhccccCc-------ccccccCCChH-
Confidence 5689999999999999999999999999999999999999766665533211110000110 11347888876
Q ss_pred CCCCC-cchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhh-
Q 005946 378 SLGPC-ARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFVKI- 453 (668)
Q Consensus 378 ~l~~~-~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~- 453 (668)
.+.+. .+.+++ .+|++.|+++|+.||||+|+||||+||| |+..|| +++++++++++||++++ +++.++
T Consensus 76 ~~~~~~~~~~~~---~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~-----e~l~~lq 147 (505)
T 1jv1_A 76 VLGSATRDQDQL---QAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQA-----ERILKLQ 147 (505)
T ss_dssp GEEETTTTGGGH---HHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHH-----HHHHHHH
T ss_pred hcccccCChHHH---HHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHH-----HHHHHHH
Confidence 33321 133344 5899999999999999999999999999 566699 57888899999999988 444431
Q ss_pred -------cCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccC
Q 005946 454 -------ENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPV 526 (668)
Q Consensus 454 -------~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~ 526 (668)
+..+.||||||||+.||+.|++||++|+|||+++++|+||.|+++||++.+ |+++|++++.++++|+
T Consensus 148 ~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~------g~~~l~~~~~~e~~P~ 221 (505)
T 1jv1_A 148 QVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFD------GKIILEEKNKVSMAPD 221 (505)
T ss_dssp HHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETT------SCBCEEETTEECEEEC
T ss_pred HHHHHhcCCCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcCC------CcccccCCcccccCCC
Confidence 334789999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred CCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc------------
Q 005946 527 GSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER------------ 593 (668)
Q Consensus 527 G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~------------ 593 (668)
||||+|.+|.++|+|++|.++|++|++|+|+||+|+ .+||.|+|||..++++++++|++|+.+ +|+
T Consensus 222 GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~-~e~~Gvl~~~dg~~~ 300 (505)
T 1jv1_A 222 GNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP-TEPVGVVCRVDGVYQ 300 (505)
T ss_dssp CGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEE
T ss_pred CchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCC-ccCcceEEEECCeEE
Confidence 999999999999999999999999999999999977 699999999999999999999997633 221
Q ss_pred ----------------------------cceeeeHHHHHHHhhc-ccCccccccccCCCccccCCCCcceeccCCCCeEE
Q 005946 594 ----------------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYE 644 (668)
Q Consensus 594 ----------------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~K 644 (668)
++|+|+++||+++.+. ...||||+|+||+||+ |.+|+.++|++|||+|
T Consensus 301 vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~---d~~g~~v~P~~pn~~k 377 (505)
T 1jv1_A 301 VVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYV---DTQGQLIKPDKPNGIK 377 (505)
T ss_dssp EECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEE---CTTSCEECCSSCCEEE
T ss_pred EEEEeeCCHHHhhhcccccccccceeeEEEEEecHHHHHHHHHhhcccCCceecccccccc---cCCCCCcCCCCCCcee
Confidence 2599999999999764 3479999999999998 4568999999999999
Q ss_pred EEEEEecccCCCCCCceEEEEec
Q 005946 645 LRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 645 lE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
||+||||+|++++ +++++||+
T Consensus 378 lE~~i~d~~~~~~--~~~~~~V~ 398 (505)
T 1jv1_A 378 MEKFVFDIFQFAK--KFVVYEVL 398 (505)
T ss_dssp EECCGGGGGGGCS--SEEEEEEC
T ss_pred HHHHHHHHHhhcC--ceEEEEEC
Confidence 9999999999998 99999996
No 3
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=4.8e-66 Score=560.13 Aligned_cols=257 Identities=19% Similarity=0.300 Sum_probs=236.8
Q ss_pred hhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhHHHHHHhhhhHHHHhh---------cCCCccc
Q 005946 392 SSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLALLQTLLSDDQRFVKI---------ENRASMP 460 (668)
Q Consensus 392 ~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~---------~~~~~iP 460 (668)
.+|+++|+++|++||||||+||||+||| |+..|| ++++++++++||||+++ ++|+++ +.++.||
T Consensus 21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~-----e~i~~lq~l~~~~~~~~~~~Ip 95 (405)
T 3oc9_A 21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTS-----ERLLRLQELASEYSHQKNVMIH 95 (405)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHH-----HHHHHHHHHHHHHHCCSCCCCE
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHH-----HHHHHHHHHHhhhccccCCCCC
Confidence 4799999999999999999999999999 666699 57999999999999998 455443 2358899
Q ss_pred EEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCch
Q 005946 461 LVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNI 540 (668)
Q Consensus 461 l~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gi 540 (668)
||||||+.||+.|++||++|+|||++++||+||+|+++||++.+ |+++|+++++++|+|+||||+|.+|+++|+
T Consensus 96 ~~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~d------g~i~l~~~~~i~~~P~GhGgi~~aL~~sG~ 169 (405)
T 3oc9_A 96 WFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFN------GKILYEKKDKPYMAPNGHGGLFKALKDNGI 169 (405)
T ss_dssp EEEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTT------SCBCEEETTEECEEECCGGGHHHHHHHTTH
T ss_pred EEEEeCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecC------CCeecCCCCccccccCCChHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred HHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc--------------------------
Q 005946 541 IKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER-------------------------- 593 (668)
Q Consensus 541 l~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~-------------------------- 593 (668)
|++|.++|++|++|+|+||+|+ .+||.|||||++++++|++|||+|+ .|+|+
T Consensus 170 Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~-~~dek~Gvl~~~dg~~~vvEysei~~e~e~~ 248 (405)
T 3oc9_A 170 LEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKG-FKEEKVGVLVKEQERIKVVEYTELTDELNKQ 248 (405)
T ss_dssp HHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEETTEEEEECGGGCCTTTTCB
T ss_pred HHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECC-CCCCccceEEEECCeeEEEEEeeCCHHHhhc
Confidence 9999999999999999999888 6999999999999999999999999 44332
Q ss_pred -------------cceeeeHHHHHHHhhcccCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccCCCCCCc
Q 005946 594 -------------FNTMLSMNVMKKLTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDK 660 (668)
Q Consensus 594 -------------~~h~fs~~fl~~~~~~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~~ 660 (668)
++|+||++||++++ ..+||||+|+|||||+| .+|+.++|++|||||||+||||+|++++ +
T Consensus 249 ~~~g~l~fn~~Ni~~h~fs~~fL~~i~--~~~l~~h~a~Kkip~~d---~~g~~~~p~~~ngiklE~fifd~f~~~~--~ 321 (405)
T 3oc9_A 249 LSNGEFIYNCGHISINGYSTSFLEKAA--EYQLPYHIAKKKVPFVN---EQGIVIHPSENNGIKKEIFFFDVFPLAT--K 321 (405)
T ss_dssp CTTSCBSSCEEEEEEEEEEHHHHHHHT--TCCCCCEEEEECCCEEC---TTSCEECCSSCCEEEEECCGGGGGGGCS--C
T ss_pred CCCCceeeccceeEeeecCHHHHHHhh--hccCCcEEeccccCccC---CCCCCcccCCcceeehHHHHHHHHHhcc--c
Confidence 25999999999998 34799999999999994 5688999999999999999999999997 9
Q ss_pred eEEEEec
Q 005946 661 VCVMEIT 667 (668)
Q Consensus 661 ~~v~ev~ 667 (668)
++++||.
T Consensus 322 ~~~~eV~ 328 (405)
T 3oc9_A 322 VSIFEIQ 328 (405)
T ss_dssp EEEEECC
T ss_pred eEEEEEC
Confidence 9999995
No 4
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=1.1e-60 Score=529.46 Aligned_cols=325 Identities=13% Similarity=0.167 Sum_probs=258.5
Q ss_pred hhHHHhhhhHHhHhhhHHHHHHHHHHHHcCcccccccccCCCHHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhh
Q 005946 279 KKERRQLEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGEKYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATEL 358 (668)
Q Consensus 279 ~~~~r~~e~~e~~k~~~~~~~l~~~L~~~gQ~HL~~~~~~l~~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~ 358 (668)
++.....+|++..+..+. ..-|.||+++|+++++++|+.|.+|+.++ ..+++++++... . ..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~l~~~~~~~~~~el~~f-~~lf~r~l~~~~-~----~~~-- 94 (528)
T 3r3i_A 32 MSQDGASQFQEVIRQELE---------LSVKKELEKILTTASSHEFEHTKKDLDGF-RKLFHRFLQEKG-P----SVD-- 94 (528)
T ss_dssp ------------CTTTTT---------STTTSSSTTTSSSCCTTTTHHHHHHHHHH-HHHHHHHHHC-------------
T ss_pred cccchHHHHHHHhHHHHH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHhhcc-C----CCC--
Confidence 334567788877665432 23389999999999999999999999999 578888876321 0 110
Q ss_pred hhhhhhhhhcccccCCCCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchh
Q 005946 359 MNATKAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSL 437 (668)
Q Consensus 359 ~~~~~~~~~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl 437 (668)
.++++|+|.+ .+. +.+.+. .|+..|...++.||||||+|||||||| |+.+||+. +++++++||
T Consensus 95 --------~~~i~p~p~~-~~~---~~~~l~---~~~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~-i~V~sgktf 158 (528)
T 3r3i_A 95 --------WGKIQRPPED-SIQ---PYEKIK---ARGLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSL-IGVRNENTF 158 (528)
T ss_dssp ---------CCCCCCCTT-TSE---EHHHHT---TSCCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGG-SEEETTEEH
T ss_pred --------HHHCcCCCHH-Hcc---CHhhcC---CccccchhhhhcCceEEEEeCCCCccccCCCCCccc-eecCCCCcH
Confidence 1368898888 443 233342 345556667788999999999999999 77789964 566799999
Q ss_pred HHHHHHhhhhHHHHhhc--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceecc
Q 005946 438 ALLQTLLSDDQRFVKIE--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM 515 (668)
Q Consensus 438 ~~l~~ll~~~e~i~~~~--~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill 515 (668)
||+++ ++|.+++ .++.||||||||+.||++|++||++|+||| .||+||+|+++||++.+ |++++
T Consensus 159 lql~~-----eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~d------g~l~l 224 (528)
T 3r3i_A 159 LDLTV-----QQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNHCR---VKIYTFNQSRYPRINKE------SLLPV 224 (528)
T ss_dssp HHHHH-----HHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTTSS---CCEEEEECCCBCCEETT------TCCCC
T ss_pred HHHHH-----HHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCccC---CCeEEEEeCCeeeEecC------Cceec
Confidence 99998 6666663 368999999999999999999999999999 59999999999999998 79999
Q ss_pred CC------CCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHHHc----CCcEEEEEee
Q 005946 516 KS------PWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSC----GADIGFQISE 585 (668)
Q Consensus 516 ~~------~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~----~~d~~~kvV~ 585 (668)
++ +++++|+|+||||+|.+|+++|+|++|.++|++|++|+||||++|++||.|||||+.+ ++||++|||+
T Consensus 225 ~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~Lg~~~~~~~~~~~d~~~kVv~ 304 (528)
T 3r3i_A 225 AKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCEFVMEVTN 304 (528)
T ss_dssp -------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHHHHHHSSCSSSCCCSEEEEECC
T ss_pred ccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHHHHHHHhcccccCCcEEEEEeE
Confidence 87 8899999999999999999999999999999999999999999998999999999998 9999999999
Q ss_pred ccCCCCcc--------------------------------------cceeeeHHHHHHHhhcc-cCccccccccCCCccc
Q 005946 586 YAKHSEER--------------------------------------FNTMLSMNVMKKLTNHI-NKLEFYATPKLNSHVE 626 (668)
Q Consensus 586 k~~~~~E~--------------------------------------~~h~fs~~fl~~~~~~~-~~L~~H~a~Kki~~~d 626 (668)
|+ .++|+ +||+|+++||+++.+.. -.||+|+++|+++
T Consensus 305 Kt-~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd--- 380 (528)
T 3r3i_A 305 KT-RADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLD--- 380 (528)
T ss_dssp CC-TTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCS---
T ss_pred cc-ccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccC---
Confidence 99 45553 26999999999997753 4699999999973
Q ss_pred cCCCCcceeccCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 627 KVDKEFIDVIPAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 627 ~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
..||++|||+||||+|++.+ +++++||.
T Consensus 381 -----------~~~~viqlEt~igd~i~~f~--~~~~i~Vp 408 (528)
T 3r3i_A 381 -----------GGLNVIQLETAVGAAIKSFE--NSLGINVP 408 (528)
T ss_dssp -----------SSSCEEEEEBCSTTCSTTSS--SCCCEECC
T ss_pred -----------CCCCEEEeHHHHHHHHHhcc--CcEEEEEe
Confidence 36899999999999999998 99999986
No 5
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=3.5e-59 Score=524.68 Aligned_cols=328 Identities=14% Similarity=0.186 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHH--cCcccccccccC-CC--HHHHHHHHHHHhcCCHH-------HHHHHHHhccCCccccchhhhhhhh
Q 005946 295 KRLIAAKKKLRE--MEQQHVFHGFRF-GE--KYQTSLLANHIVGINSK-------LLQQALQNIEIPSKRWNATELMNAT 362 (668)
Q Consensus 295 ~~~~~l~~~L~~--~gQ~HL~~~~~~-l~--~~ek~~L~~ql~~id~~-------~l~~a~~~~~~~~~~~~~~~~~~~~ 362 (668)
+.+++|+++|++ +||+|||+||++ |+ ++||++|++||..+|+. +++++.+.+. +.. +.+
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~-~~~--~~~------ 77 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLA-RES--EEV------ 77 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHH-HHT--SCC------
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhh-ccc--cCC------
Confidence 567899999997 999999999999 99 99999999999999964 3444444331 110 111
Q ss_pred hhhhhcccccCCC--CCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCC-cccccCCCCchhH
Q 005946 363 KAELMISSLKISG--EGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPH-SVVSESTANKSLA 438 (668)
Q Consensus 363 ~~~~~~~~~~vp~--~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK-~~~i~l~s~ksl~ 438 (668)
..+.++|+|. .+..... +.+++ .+|++.|+++|+ |||||+|||||||| |+.+|| ++++++++++|||
T Consensus 78 ---~~~~~~p~P~~~~~~~l~~-~~~~~---~~~~~~Gl~~i~--kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~l 148 (630)
T 3ogz_A 78 ---DFAALEMPPLIFEAPSLHR-RTAER---TALENAGTAMLC--KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYL 148 (630)
T ss_dssp ---CCSEEECCSCEEECCCTTC-CCHHH---HHHHHHHHHHGG--GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHH
T ss_pred ---cccccccCCCCCccccccC-CHHHH---HHHHHHhHHHHh--hceEEEecCCcccccCCCCCcccceecCCCCCcHH
Confidence 1234565443 1121212 23344 589999999998 99999999999999 677799 5788889999999
Q ss_pred HHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCC
Q 005946 439 LLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSP 518 (668)
Q Consensus 439 ~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~ 518 (668)
|+++ ++|+++. ++.||||||||+.||+.|++||++ ||++++||+||+|+++||++.+ + |+++|+++
T Consensus 149 ql~~-----e~i~~~~-g~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~-~----g~l~l~~~ 214 (630)
T 3ogz_A 149 AYYL-----RWAQRVG-GKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADS-A----AHLALDET 214 (630)
T ss_dssp HHHH-----HHHHHHH-CTTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSST-T----CCBCBCTT
T ss_pred HHHH-----HHHHHHh-CCCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecC-C----CceeecCC
Confidence 9998 7777543 589999999999999999999999 9999999999999999999744 3 79999999
Q ss_pred CCcccccCCCchHhHHHhhCc------------------hHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcE
Q 005946 519 WETLQAPVGSGGVFSLLSSHN------------------IIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADI 579 (668)
Q Consensus 519 ~~i~~~P~G~Ggv~~aL~~~g------------------il~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~ 579 (668)
++++|+|+||||+|.+|+++| +|++|.++|++|+||+||||+|+ .+||.|||||+.+++||
T Consensus 215 ~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~ 294 (630)
T 3ogz_A 215 GKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDM 294 (630)
T ss_dssp SSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSE
T ss_pred CcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCE
Confidence 999999999999999999999 99999999999999999999998 59999999999999999
Q ss_pred EEEEeeccCCCCcc-----------------------------------------------------cceeeeHH-HHHH
Q 005946 580 GFQISEYAKHSEER-----------------------------------------------------FNTMLSMN-VMKK 605 (668)
Q Consensus 580 ~~kvV~k~~~~~E~-----------------------------------------------------~~h~fs~~-fl~~ 605 (668)
++|||+|+ + .|+ +||+|+++ |++.
T Consensus 295 ~~kvv~r~-p-~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~ 372 (630)
T 3ogz_A 295 NFTCIPRV-P-KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDR 372 (630)
T ss_dssp EEEEECCC-S-SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHH
T ss_pred EEEEEECC-C-CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHH
Confidence 99999886 2 221 15889997 6666
Q ss_pred HhhcccCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEec---ccCCCCCCceEEEEec
Q 005946 606 LTNHINKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYS---CLNACSLDKVCVMEIT 667 (668)
Q Consensus 606 ~~~~~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD---~f~~~~~~~~~v~ev~ 667 (668)
+......+|.++..|.+ |.. ....+|++|||+|+|| +|++.. .+++++||.
T Consensus 373 l~~~~~~ip~~vNpK~~------d~~----~~~~~~~~qLEt~m~d~~~~F~~~~-~~v~~~~V~ 426 (630)
T 3ogz_A 373 LRESHGIVPEFINPKYS------DET----RRSFKKPARIESLMQDIALLFSEDD-YRVGGTVFE 426 (630)
T ss_dssp HHHHTTCCCCEECCCBS------SSS----SCCBSSCBCEECCGGGGGGGCCTTT-CCEEEEECC
T ss_pred HHhccCccceecCCccc------CCc----ccccCcchhhhhHHHHHHHhccccC-cceeEEEEC
Confidence 66544568888877643 332 2456799999999999 776332 278999885
No 6
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=1.8e-56 Score=492.48 Aligned_cols=243 Identities=12% Similarity=0.169 Sum_probs=216.5
Q ss_pred hchhhhccCCeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhc--CCCcccEEEeCCccchHH
Q 005946 397 KGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIE--NRASMPLVLVLPALEMQM 472 (668)
Q Consensus 397 ~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~--~~~~iPl~IMTS~~t~~~ 472 (668)
.|+++|+ |||||+|||||||| |+.+||+ +++ .+++|||||++ ++|.+++ .++.||||||||+.||++
T Consensus 69 ~G~~~L~--kvavvlLaGGlGTRLG~~~pKg~~~v--~sgksflql~~-----eqI~~l~~~~~~~iPl~IMTS~~T~~~ 139 (484)
T 3gue_A 69 ENTALLR--QAVVLKLNGGLGTGMGLNGPKSLLQV--KNGQTFLDFTA-----LQLEHFRQVRNCNVPFMLMNSFSTSGE 139 (484)
T ss_dssp CCHHHHT--TEEEEEEECCCCGGGTCSSCGGGSEE--ETTEEHHHHHH-----HHHHHHHHHHTCCCCEEEEECTTTHHH
T ss_pred HHHHHHh--hcEEEEEcCCcccccCCCCCceeeec--CCCCcHHHHHH-----HHHHHHHHHcCCCceEEEECCcchhHH
Confidence 6999998 89999999999999 7788996 555 49999999998 6666653 468999999999999999
Q ss_pred HHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccce--eccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCce
Q 005946 473 LEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFK--ILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVE 550 (668)
Q Consensus 473 T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gk--ill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~ 550 (668)
|++||++|+|||++++||+||+|+++||++.+ |+ ++++++++++|+|+||||+|.+|+++|+|++|.++|++
T Consensus 140 T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~d------g~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gie 213 (484)
T 3gue_A 140 TKNFLRKYPTLYEVFDSDIELMQNRVPKIRQD------NFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYR 213 (484)
T ss_dssp HHHHGGGCHHHHTTCCCCCEEECCCEECEETT------TCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCC
T ss_pred HHHHHHhCcccCCCccceEEEEeCceeeEecC------CCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCE
Confidence 99999999999999999999999999999998 44 45788899999999999999999999999999999999
Q ss_pred EEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCCccc------------------------------------
Q 005946 551 YIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEERF------------------------------------ 594 (668)
Q Consensus 551 yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~~------------------------------------ 594 (668)
|+||+||||+.+.+||.|||||+++++||++|||+|+ .++|++
T Consensus 214 yi~v~~vDNL~a~~Dp~~lG~~~~~~~d~~~kvv~Kt-~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f 292 (484)
T 3gue_A 214 YMFISNGDNLGATLDVRLLDYMHEKQLGFLMEVCRRT-ESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSF 292 (484)
T ss_dssp EEEEEETTCTTCCCCHHHHHHHHHTTCSEEEEEEECC-TTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHH
T ss_pred EEEEEcCCCcccccCHHHHHHHHhcCCCEEEEEEECC-CCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhh
Confidence 9999999995557999999999999999999999999 444321
Q ss_pred ------------ceeeeHHHHHHHhhcc---cCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccCCCCCC
Q 005946 595 ------------NTMLSMNVMKKLTNHI---NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLNACSLD 659 (668)
Q Consensus 595 ------------~h~fs~~fl~~~~~~~---~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~~~~~~ 659 (668)
|.++++++|+++.+.. .+||+|+|+|++. .++|+.||++|||+||||+|++++
T Consensus 293 ~~~~g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id----------~~k~~~~~~iqlE~~~~d~~~~~~-- 360 (484)
T 3gue_A 293 QNIAKHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVN----------PQDSQSTKVYQLEVAMGAAISLFD-- 360 (484)
T ss_dssp TCTTTSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESS----------TTCTTSCEEEEEECCGGGGGTTSS--
T ss_pred cCCCCceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceec----------CCCCCCCCEeehHHHHHHHHHhCC--
Confidence 4678889998875542 3699999999982 257999999999999999999997
Q ss_pred ceEEEEec
Q 005946 660 KVCVMEIT 667 (668)
Q Consensus 660 ~~~v~ev~ 667 (668)
+++++||.
T Consensus 361 ~~~~ieV~ 368 (484)
T 3gue_A 361 RSEAVVVP 368 (484)
T ss_dssp SEEEEECC
T ss_pred ccEEEEEC
Confidence 99999996
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=1.4e-47 Score=426.87 Aligned_cols=245 Identities=11% Similarity=0.166 Sum_probs=217.4
Q ss_pred HhchhhhccCCeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhc--CCCcccEEEeCCccchH
Q 005946 396 KKGNHLVSEGKKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIE--NRASMPLVLVLPALEMQ 471 (668)
Q Consensus 396 ~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~--~~~~iPl~IMTS~~t~~ 471 (668)
..|+++|+ |+|+|+||||+||| |+..||+ +++. +++|||++++ +++.+++ .++.||||||||+.|++
T Consensus 67 ~~g~~~l~--k~avViLAGGlGTRLg~~~PK~llpV~--~gk~fLe~~i-----e~l~~~~~~~g~~ip~viMtS~~t~e 137 (505)
T 2oeg_A 67 ECDNAVLQ--STVVLKLNGGLGTGMGLCDAKTLLEVK--DGKTFLDFTA-----LQVQYLRQHCSEHLRFMLMDSFNTSA 137 (505)
T ss_dssp CCCHHHHH--TEEEEEEECCCCGGGTCCSCGGGSEEE--TTEEHHHHHH-----HHHHHHHHHTCTTCEEEEEECHHHHH
T ss_pred hHHHHHHh--cceEEEEcCCcccccCCCCCCcccccC--CCCcHHHHHH-----HHHHHHHHhcCCCcCEEEEeCCCCHH
Confidence 37999998 99999999999999 6666994 5655 8999999988 6777664 35789999999999999
Q ss_pred HHHHHHH-HCCCCCCCCCcEEEEecCCcccccCCCCccccceec-cCCCCCcccccCCCchHhHHHhhCchHHHHHHcCc
Q 005946 472 MLEKLFL-DNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKIL-MKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGV 549 (668)
Q Consensus 472 ~T~~~f~-~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkil-l~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi 549 (668)
.|++||+ +|+|||+++++|++|+|+++||++.+ + ++++ ++++..++++|+||||+|.+|+++|+|++|.++|+
T Consensus 138 ~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~--~---~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~ 212 (505)
T 2oeg_A 138 STKSFLKARYPWLYQVFDSEVELMQNQVPKILQD--T---LEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGY 212 (505)
T ss_dssp HHHHHHHHHCHHHHTTCCCCCEEECCCEECEETT--T---CCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTC
T ss_pred HHHHHHhhhhhccCCCccceEEEEEcCEEeEecC--C---CceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCC
Confidence 9999999 99999999999999999999999998 2 4766 77777899999999999999999999999999999
Q ss_pred eEEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCCc-----------------c-------------------
Q 005946 550 EYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEE-----------------R------------------- 593 (668)
Q Consensus 550 ~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E-----------------~------------------- 593 (668)
+|++|+|+||+.+.+||.|||||..++++++++|++|+.+ ++ +
T Consensus 213 e~i~V~N~DNL~~~~D~~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e 291 (505)
T 2oeg_A 213 RYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKA 291 (505)
T ss_dssp CEEEEECTTCTTCCCCHHHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGG
T ss_pred CEEEEEECCccccccCHHHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChh
Confidence 9999999999655799999999999999999999988842 11 1
Q ss_pred ----------------cceeeeHHHHHHHhhc--c-cCccccccccCCCccccCCCCcceeccCCCCeEEEEEEEecccC
Q 005946 594 ----------------FNTMLSMNVMKKLTNH--I-NKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSYELRSSIYSCLN 654 (668)
Q Consensus 594 ----------------~~h~fs~~fl~~~~~~--~-~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~KlE~fIfD~f~ 654 (668)
+||+|+++||+++.+. . -.||+|++.|++++. | |+.||++|||+||||+|+
T Consensus 292 ~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~---d-------~~~~~~~qlE~~~~d~~~ 361 (505)
T 2oeg_A 292 DMESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSS---N-------SASPKVYQLETAMGAAIA 361 (505)
T ss_dssp GHHHHHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSS---C-------TTSCEEEEEECCGGGGGG
T ss_pred hhhcccCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCC---C-------CCCCCeEEEeEHHHHHHH
Confidence 2699999999998764 2 268999999999875 2 788999999999999999
Q ss_pred CCCCCceEEEEec
Q 005946 655 ACSLDKVCVMEIT 667 (668)
Q Consensus 655 ~~~~~~~~v~ev~ 667 (668)
+++ +++++||.
T Consensus 362 ~~~--~~~~~~V~ 372 (505)
T 2oeg_A 362 MFE--SASAIVVP 372 (505)
T ss_dssp SCT--TCEEEECC
T ss_pred hcC--cceEEEec
Confidence 998 99999986
No 8
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=2.7e-45 Score=406.49 Aligned_cols=260 Identities=16% Similarity=0.169 Sum_probs=220.6
Q ss_pred ccccCCCCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhh
Q 005946 369 SSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDD 447 (668)
Q Consensus 369 ~~~~vp~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~ 447 (668)
.++|+|.+ .+.+..+ +..+.++++.|++++ ||+|+|+||||+||| |+..||.+ ++++++++|+|+++
T Consensus 48 ~i~p~~~~-~~~~~~~---~~~~~~~~~~g~~~l--~k~~vviLAGGlGTRLg~~~PK~l-lpv~~gkp~Le~~i----- 115 (469)
T 2icy_A 48 KIQTPTDE-IVVPYEK---MTPVSQDVAETKNLL--DKLVVLKLNGGLGTTMGCTGPKSV-IEVRDGLTFLDLIV----- 115 (469)
T ss_dssp GCBCCCTT-TEEEGGG---SCCCCSCHHHHHHHH--TTEEEEEEECCBSGGGTCCSBGGG-SEEETTEEHHHHHH-----
T ss_pred ccccCCcc-cccChhh---cccchhhHHHHHHhh--ccceEEEEcCCccccCCCCCCccc-cccCCCCCHHHHHH-----
Confidence 47887776 3332221 211124678899998 799999999999999 66669954 45678999999988
Q ss_pred HHHHhhc--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCC---CCcc
Q 005946 448 QRFVKIE--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSP---WETL 522 (668)
Q Consensus 448 e~i~~~~--~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~---~~i~ 522 (668)
+++.+++ .++.||||||||..|++.|++||++|+|||+ +|+||.|+++||++.+ |+++|+++ ++++
T Consensus 116 ~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~fG~---~I~~f~Q~~~P~i~~e------~~~~l~~~~~~~~~e 186 (469)
T 2icy_A 116 IQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFNQSKYPRVVAD------EFVPWPSKGKTDKEG 186 (469)
T ss_dssp HHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTSSS---CEEEEECCCEECEETT------TTEEGGGGTCCSGGG
T ss_pred HHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccCCc---eEEEEEecceeeEccc------cCccccCCCCCcccc
Confidence 6766653 2577999999999999999999999999998 8999999999999998 79999877 7899
Q ss_pred cccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCHHHHHHHHHcCCcEEEEEeeccCCCCcc---------
Q 005946 523 QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNSMFLGFVKSCGADIGFQISEYAKHSEER--------- 593 (668)
Q Consensus 523 ~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~--------- 593 (668)
++|+||||+|++|+++|++++|.++|++|++|+|+||+.+.+||.|+|||.+++++++++|++|+. ++++
T Consensus 187 ~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~~~d~~ll~~~~~~~a~~t~~v~~k~~-~~~~~Gvl~~~dg 265 (469)
T 2icy_A 187 WYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTL-ADVKGGTLISYEG 265 (469)
T ss_dssp EECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHHHHHTCSEEEEEEECCT-TCCSSCEEEEETT
T ss_pred CCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCcccCHHHHHHHHHcCCCeeEEEEEecc-CCCceeEEEEECC
Confidence 999999999999999999999999999999999999965579999999999999999999999984 3221
Q ss_pred -----------------------------cceeeeHHHHHHHhhc-ccCccccccccCCCccccCCCCcceeccCCCCeE
Q 005946 594 -----------------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVIPAAPNSY 643 (668)
Q Consensus 594 -----------------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kki~~~d~~~~~~~~v~P~~pN~~ 643 (668)
.+|+|+++||+++.+. ...||+|+++|++ | .+|++
T Consensus 266 ~~~vvE~~e~p~~~~~e~k~~~~~~~~N~g~y~~~~~~L~~i~~~~~~~lp~~v~~K~i------d---------~~~~~ 330 (469)
T 2icy_A 266 KVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEV------D---------GVKVL 330 (469)
T ss_dssp EEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEE------T---------TEEEE
T ss_pred EEEEEEEeccChhhhhhhccccccceeeEEEEEEcHHHHHHHHhcccCCchhhccceec------C---------CCceE
Confidence 1589999999999764 3479999999997 2 25799
Q ss_pred EEEEEEecccCCCCCCceEEEEec
Q 005946 644 ELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 644 KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
|||+|+||+|++++ +++++||.
T Consensus 331 klE~~~~D~~~~~~--~~~~~~V~ 352 (469)
T 2icy_A 331 QLETAAGAAIRFFD--NAIGVNVP 352 (469)
T ss_dssp CCBCCGGGGGGGST--TCEEEECC
T ss_pred eehHhhHHHHHhcC--CeEEEEec
Confidence 99999999999998 99999985
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-45 Score=404.10 Aligned_cols=320 Identities=11% Similarity=0.124 Sum_probs=237.8
Q ss_pred hhhHHhHhhhHHHHHHHHHHHHcCcccccccccCCC--HHHHHHHHHHHhcCCHHHHHHHHHhccCCccccchhhhhhhh
Q 005946 285 LEWKERKKFQKRLIAAKKKLREMEQQHVFHGFRFGE--KYQTSLLANHIVGINSKLLQQALQNIEIPSKRWNATELMNAT 362 (668)
Q Consensus 285 ~e~~e~~k~~~~~~~l~~~L~~~gQ~HL~~~~~~l~--~~ek~~L~~ql~~id~~~l~~a~~~~~~~~~~~~~~~~~~~~ 362 (668)
.+|++..+.+.. .++++. |-++|+... ++||++|.+||..++ .+++++.+...+. . ...
T Consensus 2 ~~~~~~~~~~~~-~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~--~~~------ 62 (488)
T 2i5k_A 2 YAFESNTNSVAA-SQMRNA--------LNKLADSSKLDDAARAKFENELDSFF-TLFRRYLVEKSSR-T--TLE------ 62 (488)
T ss_dssp ---------CHH-HHHHHH--------TTCCC--------CCSCTHHHHHHHH-HHHHHHHHHHHSC-C--SCC------
T ss_pred cchhhhhHHHHH-HHHHHH--------HHHHHhhcCCCHHHHHHHHHHHHHHH-HHHHHHHhccccc-C--CCc------
Confidence 467777776644 345444 455777766 788899999998664 3445554321100 0 000
Q ss_pred hhhhhcccccCCCCCCCCCCcchhhhccchhHHHhchhhhccCCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHH
Q 005946 363 KAELMISSLKISGEGSLGPCARAKKVVTNSSLQKKGNHLVSEGKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQ 441 (668)
Q Consensus 363 ~~~~~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~ 441 (668)
.+.++|+|.+ .+. +.+.+. .|. .|+ ++.||+|||+||||+||| |+..||++ ++++++++|++++
T Consensus 63 ----~~~i~p~~~~-~~~---~~~~~~---~~~-~~~--~~~~k~avViLAGG~GTRmgs~~PK~l-~~V~~gk~~Le~~ 127 (488)
T 2i5k_A 63 ----WDKIKSPNPD-EVV---KYEIIS---QQP-ENV--SNLSKLAVLKLNGGLGTSMGCVGPKSV-IEVREGNTFLDLS 127 (488)
T ss_dssp ----GGGEECCCTT-TEE---EHHHHH---SSC-CCS--TTGGGEEEEEECCCBSGGGTCCSBSTT-SCCBTTBCHHHHH
T ss_pred ----ccccccCChh-ccc---Chhhcc---cch-hhh--hhcCCceEEEEcCCCcccCCCCCCccc-cccCCCCcHHHHH
Confidence 1247888766 333 122221 111 244 446899999999999999 66669953 3557899999998
Q ss_pred HHhhhhHHHHhhc--CCCcccEEEeCCccchHHHHHHHHHCCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCC
Q 005946 442 TLLSDDQRFVKIE--NRASMPLVLVLPALEMQMLEKLFLDNDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPW 519 (668)
Q Consensus 442 ~ll~~~e~i~~~~--~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~ 519 (668)
+ +++.+++ .++.||||||||+.|++.|++||+++++||+ +|+||.|+++||++.+ |+++|+.++
T Consensus 128 i-----~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~d------~~~~l~~~~ 193 (488)
T 2i5k_A 128 V-----RQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSANRI---RIRSFNQSRFPRVYKD------SLLPVPTEY 193 (488)
T ss_dssp H-----HHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCSSSC---EEEEECCCCEECEETT------TCCBSCSSS
T ss_pred H-----HHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccccCc---eEEEEEeCccceEccc------cceeeccCC
Confidence 7 5665553 2578999999999999999999999999998 7999999999999998 799998775
Q ss_pred ---CcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccc-ccCHHHHHHHHHcCCcEEEEEeeccCCCCcc--
Q 005946 520 ---ETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNA-IGNSMFLGFVKSCGADIGFQISEYAKHSEER-- 593 (668)
Q Consensus 520 ---~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~-~~DP~flG~~~~~~~d~~~kvV~k~~~~~E~-- 593 (668)
+++++|+||||+|.+|..+|++++|.++|++|++|+|+|| |+ .+||.+||||..++++++++|+++.. |+++
T Consensus 194 ~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~-p~~~yG 271 (488)
T 2i5k_A 194 DSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTR-ADVKGG 271 (488)
T ss_dssp SSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCG-GGSSSC
T ss_pred CCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecC-CCCcee
Confidence 6999999999999999999999999999999999999999 66 59999999999999999999999873 3221
Q ss_pred ------------------------------------cceeeeHHHHHHHhhc-ccCccccccccCCCccccCCCCcceec
Q 005946 594 ------------------------------------FNTMLSMNVMKKLTNH-INKLEFYATPKLNSHVEKVDKEFIDVI 636 (668)
Q Consensus 594 ------------------------------------~~h~fs~~fl~~~~~~-~~~L~~H~a~Kki~~~d~~~~~~~~v~ 636 (668)
.+|+|+++||+++.+. ...||+|+|.|++|| + +
T Consensus 272 ~Iv~~dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~--~------- 341 (488)
T 2i5k_A 272 TLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-D--G------- 341 (488)
T ss_dssp EEEEETTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------------
T ss_pred EEEEECCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccC-C--C-------
Confidence 1589999999998664 347999999999988 3 1
Q ss_pred cCCCCeEEEEEEEecccCCCCCCceEEEEec
Q 005946 637 PAAPNSYELRSSIYSCLNACSLDKVCVMEIT 667 (668)
Q Consensus 637 P~~pN~~KlE~fIfD~f~~~~~~~~~v~ev~ 667 (668)
+.+|++|||+||||+|++++ +++++||.
T Consensus 342 -~~~~~~qlE~~~~d~~~~~~--~~~~~~V~ 369 (488)
T 2i5k_A 342 -HEINVLQLETACGAAIRHFD--GAHGVVVP 369 (488)
T ss_dssp ----CEECCBCCGGGGGGGSS--SCEEEEEC
T ss_pred -CCCceEEeeehhhhHHhhcc--CceEEEec
Confidence 24589999999999999997 99999995
No 10
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=100.00 E-value=5.4e-43 Score=342.38 Aligned_cols=173 Identities=29% Similarity=0.433 Sum_probs=152.6
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHhc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQARP 156 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae~ 156 (668)
++.||+|++|||+||||||+++||+|+.++. .+.+|+.. .| ..++++++++|.|+ +.+++||+||+|||+|++
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~~~~-~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~lvkf~gi~dr~~Ae~ 74 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAESIFD-YQPWFLKI--KG--EWQSIELENWRYHN--HEIIVKLKGVDDREAAQI 74 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGGGGG-CCSEEEEE--TT--EEEEECEEEEEESS--SCEEEEESSCCSHHHHHT
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHHhcC-CCEEEEec--CC--eEEEEEEEEEEEeC--CEEEEEEcCCCCHHHHHH
Confidence 6899999999999999999999999997655 56677653 22 45789999999985 479999999999999999
Q ss_pred ccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCC
Q 005946 157 LVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDAS 236 (668)
Q Consensus 157 L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~ 236 (668)
|+|+.|||+++++|+|++|||||+|||||+|++ ++|+.+|+|++|+++||||||+|+.... ...+
T Consensus 75 L~G~~l~v~~~~lp~l~edE~Y~~dLiGl~V~~-~~g~~lG~V~~v~~~gandvl~V~~~~~--------------~~~~ 139 (177)
T 3h9n_A 75 LANVEIGVDLSVFPELEEGDYYWHDLIGCTVVN-LEGYTMGTVTEMMETGSNDVLVVKANTK--------------DAFG 139 (177)
T ss_dssp TTTCEEEEECCCCCCCSSSCGGGGGTTTCEEEE-TTCCEEEEEEEEEESSSCEEEEEECCTT--------------CTTC
T ss_pred hcCCEEEEEHHHCCCCCCCCCCHHHhcCCEEEe-CCCCEEEEEEEEeeCCCcEEEEEEeccc--------------cCCC
Confidence 999999999999999999999999999999996 5688999999999999999999984200 0014
Q ss_pred CcEEEEecc-cCccceeecCCCEEEEeCCCCccccc
Q 005946 237 GRLVWIPFV-EEIVPIVDMNGREMQITPPKGLLELN 271 (668)
Q Consensus 237 gkevLIPfv-~~fV~~VDle~k~I~V~~peGLLel~ 271 (668)
++++||||+ ++||++||+++|+|+|++|+||||..
T Consensus 140 ~~e~LIP~v~~~~V~~VDl~~~~I~v~~p~glle~~ 175 (177)
T 3h9n_A 140 KQERLIPFLYEQVVKRVDLTTKTIEVDWDAGFLEHH 175 (177)
T ss_dssp CSEEEEECCBTTTEEEEEGGGTEEEECCCSSTTCCC
T ss_pred CcEEEeeccchheEEEEeCCCCEEEEECCcchhhcc
Confidence 689999998 99999999999999999999999853
No 11
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=100.00 E-value=1e-42 Score=342.74 Aligned_cols=166 Identities=30% Similarity=0.497 Sum_probs=143.9
Q ss_pred CCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHH
Q 005946 75 LDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQA 154 (668)
Q Consensus 75 ~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~A 154 (668)
++++.||+|++|||+||||||+++||+|+ +|...+.+|+.. + ...++++++++|.|+ +.+|+||+||+|||+|
T Consensus 18 ~~~v~VG~I~~~hGikGeVkV~~~Td~pe-~~~~~~~~~l~~---~-~~~~~~~v~~~r~~~--~~~ivkf~gi~dr~~A 90 (187)
T 2f1l_A 18 DDLVVIGKIVSVYGIRGEVKVYSFTDPLD-NLLDYRRWTLRR---D-GEIRQAELVRGRLHG--KVLAAKLKGLDDREEA 90 (187)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGCCEEEEEE---T-TEEEEEEEEEEEEET--TEEEEEETTCCSHHHH
T ss_pred CCEEEEEEEeCCEeeCEEEEEEECCCCHH-HhccCCEEEEec---C-CcEEEEEEEEEEEEC--CEEEEEEeCCCCHHHH
Confidence 67899999999999999999999999998 576666666632 2 235689999999885 4799999999999999
Q ss_pred hcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCC
Q 005946 155 RPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASD 234 (668)
Q Consensus 155 e~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~ 234 (668)
++|+|+.|||+++++|+|++|||||+|||||+|++ ++|+.+|+|++|+++||||||+|+..
T Consensus 91 e~L~G~~l~v~r~~lp~l~edEfY~~DLIGl~V~~-~~g~~lG~V~~v~~~ganDvlvV~~~------------------ 151 (187)
T 2f1l_A 91 RTFTGYEICIPRSELPSLEEGEYYWHQLEGLKVID-QGRQLLGVIDHLLETGANDVMVVKPC------------------ 151 (187)
T ss_dssp HTTTTCEEEEEGGGSCC-----CCHHHHTTCEEEE-TTSCEEEEEEEEECCSSSCEEEEECC------------------
T ss_pred HHhCCCEEEEEHHHCCCCCCCCEeHHHcCCeEEEe-CCCCEEEEEEEEccCCCcEEEEEEeC------------------
Confidence 99999999999999999999999999999999996 56888999999999999999999841
Q ss_pred CCC----cEEEEecccCccceeecCCCEEEEeCCCCc
Q 005946 235 ASG----RLVWIPFVEEIVPIVDMNGREMQITPPKGL 267 (668)
Q Consensus 235 ~~g----kevLIPfv~~fV~~VDle~k~I~V~~peGL 267 (668)
++ +++||||+++||++||+++|+|+|+||+||
T Consensus 152 -~g~~~~ke~LIPfv~~~V~~VDle~~~I~V~~p~GL 187 (187)
T 2f1l_A 152 -AGSLDDRERLLPYTGQCVLSIDLAAGEMRVDWDADF 187 (187)
T ss_dssp -TTSSSSCCEEEECSTTTEEEEETTTTEEEECCCTTC
T ss_pred -CCCCCCcEEEEechHHhcCEEeCCCCEEEEeCCCCC
Confidence 34 799999999999999999999999999997
No 12
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=100.00 E-value=2.3e-42 Score=339.31 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=150.8
Q ss_pred CCCCCCeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCC
Q 005946 71 SASGLDFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDT 150 (668)
Q Consensus 71 ~~~~~~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~ 150 (668)
++.+++++.||+|++|||+||||||+++||+|+ +|...+.+|+.. .+ ..++++++++|.|+ +.+|+||+||+|
T Consensus 5 ~~~~~~~v~vG~I~~~hGikGevkv~~~td~pe-~~~~~~~~~l~~--~~--~~~~~~v~~~r~~~--~~~ivkf~gi~d 77 (182)
T 2qgg_A 5 QNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMS-NMFDYLPWYIET--KA--GWQTVDVKRWKPHG--KGLVVSLKGVSD 77 (182)
T ss_dssp -CCCSSEEEEEEEEEEETTTTEEEEEECSSSGG-GGGGSSSEEEEE--TT--EEEEECEEEEEEET--TEEEEEETTCCS
T ss_pred cCCCCCEEEEEEEeCCcccCEEEEEEECCCCHH-HhccCCEEEEec--CC--cEEEEEEEEEEEcC--CEEEEEECCCCC
Confidence 455678999999999999999999999999998 566666666643 12 35689999999885 479999999999
Q ss_pred HHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEcc---CCeEeEEEEEeccCCCceEEEEEeccccccccCccc
Q 005946 151 VEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKE---TGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEE 227 (668)
Q Consensus 151 re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~---~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~ 227 (668)
|++|++|+|+.|||+++++|+|++|||||+|||||+|++.+ +|..||+|++|+++||||||+|+.+.
T Consensus 78 r~~Ae~L~G~~l~v~~~~lp~l~ede~Y~~dLiGl~V~~~~~~~~g~~lG~V~~v~~~gandvl~V~~~~---------- 147 (182)
T 2qgg_A 78 RTGAESLVASNIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDEEQEVNLGQIHELFETGANDVMVVRATP---------- 147 (182)
T ss_dssp HHHHHTTTTCEEEEETTCCCCCHHHHCCHHHHTTCEEEEECTTSCEEEEEEEEEEEECSSCEEEEEECCS----------
T ss_pred HHHHHHhCCCEEEEEHHHCCCCCCCcEeHHHhCCcEEEEcccCCCCcEEEEEEEEccCCCcEEEEEEecc----------
Confidence 99999999999999999999999999999999999999742 68899999999999999999998410
Q ss_pred ccccCCCCCC-cEEEEeccc-CccceeecCCCEEEEeCCCCc
Q 005946 228 ASSSASDASG-RLVWIPFVE-EIVPIVDMNGREMQITPPKGL 267 (668)
Q Consensus 228 ~~~~~~~~~g-kevLIPfv~-~fV~~VDle~k~I~V~~peGL 267 (668)
..++ +++|||| + +||++||+++|+|+|+||+||
T Consensus 148 ------~~~g~ke~LIPf-~~~~V~~VDl~~~~I~v~~p~gl 182 (182)
T 2qgg_A 148 ------DSIDSEERMIPW-HKDVVQRVDLEAGRIYVNWGVDY 182 (182)
T ss_dssp ------SSSSSCCEEEEC-CTTTEEEEETTTTEEEESCCCC-
T ss_pred ------CCCCCeEEEeec-ChhhEeEEECCCCEEEEeCCCCC
Confidence 0135 7999999 9 999999999999999999997
No 13
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=100.00 E-value=6.8e-40 Score=316.06 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=138.1
Q ss_pred CeEEEEEEeccceeeeeEEEEeccCCccccccCCCceEEEEeecCcceeEEEEEEEeeeeCCCceEEEEecCCCCHHHHh
Q 005946 76 DFVDVGYVYSVHGLQGEISVKPSTDFPELRFTTPGTRWLRQQVLGRETIREVKLIDGREHPGQKSWILTFEGIDTVEQAR 155 (668)
Q Consensus 76 ~~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~~~~~~l~~~~~g~~~~~~v~v~~~r~~~~~~~~ivkf~gId~re~Ae 155 (668)
+++.||+|++|||+|||||| +||+ +|......|+. .+ ..+ +++++|.|+ +.+++||+||+|||+|+
T Consensus 2 ~~v~vG~I~~~hGikGevkv--~td~---~~~~~~~~~~~---~~--~~~--~v~~~r~~~--~~~ivkf~gi~~r~~Ae 67 (162)
T 2dyi_A 2 RLVEIGRFGAPYALKGGLRF--RGEP---VVLHLERVYVE---GH--GWR--AIEDLYRVG--EELVVHLAGVTDRTLAE 67 (162)
T ss_dssp CEEEEEEEEEECSSSSCEEE--EECG---GGGGCSEEEET---TT--EEE--EEEEEEEET--TEEEEEETTCCSHHHHH
T ss_pred CEEEEEEEeCCCccCeEEEE--EEch---HhcCCCEEEEe---CC--CEE--EEEEEEEEC--CEEEEEEcCCCCHHHHH
Confidence 78999999999999999999 8887 56655544442 12 222 899999884 58999999999999999
Q ss_pred cccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCC
Q 005946 156 PLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDA 235 (668)
Q Consensus 156 ~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~ 235 (668)
+|+|+.|||+++++|+|++|||||+|||||+|+ ++|+.+|+|++|+++||||+|+|+..
T Consensus 68 ~L~G~~l~v~~~~lp~l~e~e~y~~dLiGl~V~--~~g~~lG~V~~v~~~ga~dvl~V~~~------------------- 126 (162)
T 2dyi_A 68 ALVGLRVYAEVADLPPLEEGRYYYFALIGLPVY--VEGRQVGEVVDILDAGAQDVLIIRGV------------------- 126 (162)
T ss_dssp TTTTCEEEEEGGGSCCCCTTCCCHHHHTTCEEE--ETTEEEEEEEEEEEETTEEEEEEEEC-------------------
T ss_pred HhCCCEEEEEHHHCCCCCCCcEeHHHhCCeEEE--ECCeEEEEEEEEccCCCceEEEEEeC-------------------
Confidence 999999999999999999999999999999998 46889999999999999999999852
Q ss_pred CC-----cEEEEecccCccceeecCCCEEEEeCCCCccc
Q 005946 236 SG-----RLVWIPFVEEIVPIVDMNGREMQITPPKGLLE 269 (668)
Q Consensus 236 ~g-----kevLIPfv~~fV~~VDle~k~I~V~~peGLLe 269 (668)
++ +++||||+++||+ || +|+|+|+||+||||
T Consensus 127 ~g~~~~~~e~LIPfv~~~V~-VD--~~~I~v~~p~glld 162 (162)
T 2dyi_A 127 GERLRDRAERLVPLQAPYVR-VE--EGSIHVDPIPGLFD 162 (162)
T ss_dssp CSSGGGSTTEEEETTCTTEE-EC--SSCEEECCCTTTCC
T ss_pred CCCcCcCcEEEEeccccEEE-EE--CCEEEEeCCchhcC
Confidence 34 7899999999999 99 99999999999986
No 14
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=96.47 E-value=0.0082 Score=66.60 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=83.6
Q ss_pred cCCeEEEEeccCCCCCCCCC-CC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH-C
Q 005946 404 EGKKAMVLVVHNSEEGNECD-PH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD-N 480 (668)
Q Consensus 404 ~gkvavvllAGG~GtRg~~~-pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~-n 480 (668)
.+.+|||+||||.|||.... || ++++ .++.+++... +.+.+++- --++|.|+. ..+.++++|.+ .
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~pK~l~pv---~gkp~i~~~l-----~~~~~~g~---~~i~vv~~~-~~~~i~~~~~~~~ 77 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVL-----HAIAKLAP---QRLIVVLGH-DHQRIAPLVGELA 77 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSSCGGGCEE---TTEEHHHHHH-----HHHHHHCC---SEEEEEECT-THHHHHHHHHHHH
T ss_pred CCCceEEEECCcCcccCCCCCCHHHeEE---CChhHHHHHH-----HHHHhCCC---CEEEEEeCC-CHHHHHHHHHHHH
Confidence 36799999999999996444 99 4443 4778766654 55555442 145677764 46789999976 3
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHh-HHHhhCchHHHHHHcCceEEEEEcCCc
Q 005946 481 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVF-SLLSSHNIIKNLDELGVEYIQICTANP 559 (668)
Q Consensus 481 ~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~-~aL~~~gil~~l~~~Gi~yi~v~~vDN 559 (668)
+.||. +|.|..|. .|-|.|+-. .++ +.+.+.-..++.+.+-|.
T Consensus 78 ~~~~~---~i~~~~q~---------------------------~~lGTa~Av~~a~------~~l~~~~~~~~lvl~gd~ 121 (501)
T 3st8_A 78 DTLGR---TIDVALQD---------------------------RPLGTGHAVLCGL------SALPDDYAGNVVVTSGDT 121 (501)
T ss_dssp HHHTS---CCEEEECS---------------------------SCCCHHHHHHHHH------TTSCTTCCSEEEEEETTC
T ss_pred HhcCC---cEEEEEcC---------------------------CCCCcHHHHHHHH------HHhccccccceeeecCcc
Confidence 44564 45555442 123666532 222 123223345777777787
Q ss_pred cccccC--HHHHHHHHHcCCcEEEEEeecc
Q 005946 560 RNAIGN--SMFLGFVKSCGADIGFQISEYA 587 (668)
Q Consensus 560 ~l~~~D--P~flG~~~~~~~d~~~kvV~k~ 587 (668)
.+...+ -.++-++...++++..-+++..
T Consensus 122 ~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~ 151 (501)
T 3st8_A 122 PLLDADTLADLIATHRAVSAAVTVLTTTLD 151 (501)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred eeecHHHHHHHHHHHhhccccceEeeeccC
Confidence 777433 3467788888888877666544
No 15
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=95.36 E-value=0.12 Score=51.97 Aligned_cols=124 Identities=7% Similarity=0.021 Sum_probs=77.0
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++.+|++|||.|||.. +|. .++ .++++++... +++.+.+ + -.++|.|. ++.+.+++++ ||
T Consensus 2 ~~~aiIlA~G~stRlp--~K~L~~i---~GkPli~~~l-----~~l~~~~--~-~~ivVv~~---~~~i~~~~~~---~g 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP--GKPLADI---GGKPMIQWVY-----EQAMQAG--A-DRVIIATD---DERVEQAVQA---FG 62 (252)
T ss_dssp CEEEEEECCCCCSSST--TGGGCEE---TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TT
T ss_pred ceEEEEecCcCCCCCC--CcceeeE---CCEEHHHHHH-----HHHHhCC--C-CeEEEECC---HHHHHHHHHH---cC
Confidence 5889999999999963 684 333 5888876655 5555533 2 24566663 5888899885 45
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc-
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 563 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~- 563 (668)
. ++.+ ..+ ..|.|.|+++.++.. +...+-+++.+.+-|+++..
T Consensus 63 ~---~v~~---------~~~------------------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli~~ 106 (252)
T 3oam_A 63 G---VVCM---------TSP------------------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLIPP 106 (252)
T ss_dssp C---EEEE---------CCT------------------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTCCH
T ss_pred C---EEEE---------cCC------------------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeecCH
Confidence 3 2211 111 134566776665532 21125679999999998872
Q ss_pred -cCHHHHHHHHHcCCcEEEEEe
Q 005946 564 -GNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 564 -~DP~flG~~~~~~~d~~~kvV 584 (668)
.--.++-.+...++++++-++
T Consensus 107 ~~i~~l~~~~~~~~~~~~~~~~ 128 (252)
T 3oam_A 107 AIIRQVADNLAACSAPMATLAV 128 (252)
T ss_dssp HHHHHHHHHHHHSSCSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEee
Confidence 112345666666788766544
No 16
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=94.83 E-value=0.27 Score=48.37 Aligned_cols=123 Identities=7% Similarity=0.026 Sum_probs=72.2
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++.+|++|||.|||.+ ||. +++ .++++++... +++.+.+ ..-.++|.|+. +.+.+++++. |
T Consensus 2 ~~~aiIlA~G~~~R~~--~K~l~~i---~g~pli~~~i-----~~~~~~~--~~~~ivvv~~~---~~i~~~~~~~---~ 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP--GKPLLDI---VGKPMIQHVY-----ERALQVA--GVAEVWVATDD---PRVEQAVQAF---G 63 (245)
T ss_dssp CEEEEEECCSCCSSST--TGGGCEE---TTEEHHHHHH-----HHHHTCT--TCCEEEEEESC---HHHHHHHHHT---T
T ss_pred CeEEEEEcCCcCCCCC--CCccccc---CCchHHHHHH-----HHHHhCC--CCCeEEEECCc---HHHHHHHHHc---C
Confidence 5788999999999963 894 443 4788877654 5555432 11256777764 6778888753 3
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc-
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 563 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~- 563 (668)
. .+ +... + ..+.|.++++.++.. + +-+++.+.+.|+++..
T Consensus 64 ~---~~----------~~~~-~----------------~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~~~ 104 (245)
T 1h7e_A 64 G---KA----------IMTR-N----------------DHESGTDRLVEVMHK------V---EADIYINLQGDEPMIRP 104 (245)
T ss_dssp C---EE----------EECC-S----------------CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTCCH
T ss_pred C---eE----------EeCC-C----------------ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcCCH
Confidence 2 11 1111 0 013344556655542 1 4578999999999872
Q ss_pred -cCHHHHHHHHHc-CCcEEEEEee
Q 005946 564 -GNSMFLGFVKSC-GADIGFQISE 585 (668)
Q Consensus 564 -~DP~flG~~~~~-~~d~~~kvV~ 585 (668)
.--.++-.+... +++++.-+++
T Consensus 105 ~~i~~l~~~~~~~~~~~~~~~~~~ 128 (245)
T 1h7e_A 105 RDVETLLQGMRDDPALPVATLCHA 128 (245)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEeec
Confidence 111244555556 6776554433
No 17
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=94.54 E-value=0.22 Score=50.73 Aligned_cols=125 Identities=6% Similarity=-0.029 Sum_probs=75.2
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++.+|++|||.|||.. .|.+ .++ .+|++++... +++.+.+ + -.++|.|. ++.+.+++++ ||.
T Consensus 18 ~~~aIIlA~G~stRlp--~K~L-~~i-~GkPmi~~~l-----~~l~~~~--i-~~IvV~t~---~~~i~~~~~~---~g~ 79 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP--GKPL-VDI-NGKPMIVHVL-----ERARESG--A-ERIIVATD---HEDVARAVEA---AGG 79 (264)
T ss_dssp CCEEEEECCSCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TTC
T ss_pred ceEEEEEcCCCCCCCC--Ccce-eeE-CCeEHHHHHH-----HHHHhCC--C-CEEEEECC---HHHHHHHHHH---cCC
Confidence 5889999999999963 4732 223 5788876654 5555432 2 24566663 5778888875 453
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc--
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 563 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~-- 563 (668)
++. +..+ ..|.|.|++..++. .+...+-+++.+.+-|+++..
T Consensus 80 ---~v~---------~~~~------------------~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli~~~ 123 (264)
T 3k8d_A 80 ---EVC---------MTRA------------------DHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMIPAT 123 (264)
T ss_dssp ---EEE---------ECCT------------------TCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTCCHH
T ss_pred ---EEE---------EecC------------------CCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccCCHH
Confidence 221 1111 12456666666553 232235689999999999982
Q ss_pred cCHHHHHHHHHcCCcEEEEEe
Q 005946 564 GNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 564 ~DP~flG~~~~~~~d~~~kvV 584 (668)
.--.++-.+...++++++-++
T Consensus 124 ~i~~li~~~~~~~~~~~~~~~ 144 (264)
T 3k8d_A 124 IIRQVADNLAQRQVGMATLAV 144 (264)
T ss_dssp HHHHHHHHHHTSSCSEEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEEE
Confidence 112245555667788776554
No 18
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=94.04 E-value=0.097 Score=52.95 Aligned_cols=132 Identities=4% Similarity=0.026 Sum_probs=78.5
Q ss_pred CCeEEEEeccCCCCCC-C---CCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEGN-E---CDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 405 gkvavvllAGG~GtRg-~---~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.++.+|+||||.|||. . ..||. +++ .++++++... +.+.+.+ . -.++|.|.....+.+.+++..
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i---~g~pli~~~l-----~~l~~~g--~-~~iivv~~~~~~~~~~~~~~~ 91 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPV---GRYPMIYHAV-----YKLKQCD--I-TDIMIITGKEHMGDVVSFLGS 91 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEE---TTEEHHHHHH-----HHHHHTT--C-CEEEEEECTTTHHHHHHHHTT
T ss_pred cCcEEEEECCCCccccccccCCCCceecEE---CCEEHHHHHH-----HHHHHCC--C-CEEEEECChhhHHHHHHHHhh
Confidence 4678999999999993 2 34894 444 4899987766 5665532 2 256777776556778888876
Q ss_pred CCCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCc
Q 005946 480 NDHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANP 559 (668)
Q Consensus 480 n~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN 559 (668)
...||+ ++.+..| . .+.|.|+...+. ++.+ +-+++.|.+.|+
T Consensus 92 ~~~~~~---~i~~~~~--------~-------------------~~~G~~~al~~a-----~~~~---~~~~~lv~~~D~ 133 (269)
T 4ecm_A 92 GQEFGV---SFTYRVQ--------D-------------------KAGGIAQALGLC-----EDFV---GNDRMVVILGDN 133 (269)
T ss_dssp SGGGTC---EEEEEEC--------S-------------------SCCCHHHHHHTT-----HHHH---TTSEEEEEETTE
T ss_pred ccccCc---eEEEeeC--------C-------------------ccCcHHHHHHHH-----HHhc---CCCcEEEEeCCc
Confidence 555664 2322111 1 123443322211 2222 146888888888
Q ss_pred cccccCHHHHHHHHHcCCcEEEEEee
Q 005946 560 RNAIGNSMFLGFVKSCGADIGFQISE 585 (668)
Q Consensus 560 ~l~~~DP~flG~~~~~~~d~~~kvV~ 585 (668)
++...--.++-.+...++++..-+.+
T Consensus 134 ~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 134 IFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp EESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred cCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 66532234567777778887665543
No 19
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=94.01 E-value=0.39 Score=48.73 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=69.9
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++.+|++|||.|||.. +|. .++ .+|++++... +++.+.+ + =.++|.|. ++.+.+++++ ||
T Consensus 9 ~~~aIIlA~G~stRl~--~K~L~~i---~GkPli~~~l-----~~l~~~~--i-~~VvVvt~---~~~i~~~~~~---~g 69 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP--GKALVDI---AGKPMIQHVY-----ESAIKSG--A-EEVVIATD---DKRIRQVAED---FG 69 (256)
T ss_dssp CCEEEEECCCC---CT--TGGGCEE---TTEEHHHHHH-----HHHHHTT--C-SEEEEEES---CHHHHHHHHH---TT
T ss_pred CceEEEEcCCCCCCCC--CCCeeeE---CCchHHHHHH-----HHHHhCC--C-CEEEEECC---HHHHHHHHHH---cC
Confidence 6899999999999964 784 433 5888876655 5655432 2 13566664 4788888875 45
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCcccccc
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 564 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~ 564 (668)
. ++. +..+ ..|.|.++++.++.. +...+-+++.+++-|+++.
T Consensus 70 ~---~v~---------~~~~------------------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli-- 111 (256)
T 3tqd_A 70 A---VVC---------MTSS------------------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI-- 111 (256)
T ss_dssp C---EEE---------ECCT------------------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC--
T ss_pred C---eEE---------EeCC------------------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC--
Confidence 3 221 1111 124566666665532 2113568999999999988
Q ss_pred CHH----HHHHHHHc-CCcEEEEEe
Q 005946 565 NSM----FLGFVKSC-GADIGFQIS 584 (668)
Q Consensus 565 DP~----flG~~~~~-~~d~~~kvV 584 (668)
+|. ++..+... ++++++-++
T Consensus 112 ~~~~i~~li~~~~~~~~~~~a~l~~ 136 (256)
T 3tqd_A 112 PPDAIRKLAEDLDEHDNVKVASLCT 136 (256)
T ss_dssp CHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEee
Confidence 332 34444443 566665544
No 20
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=93.99 E-value=0.11 Score=53.02 Aligned_cols=65 Identities=28% Similarity=0.354 Sum_probs=48.4
Q ss_pred hhccCCcEEEEccCCeEeEEEEEec---cCCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecC
Q 005946 179 TRDLVGMRVVMKETGELVGTVVNVF---NSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMN 255 (668)
Q Consensus 179 ~~DLIG~~V~d~~~G~~lG~V~dV~---~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle 255 (668)
-.||+|++|+. .+|+.+|+|.+++ .+|.--.++|.+. ..++++|||.- +..||-+
T Consensus 148 ~~dl~G~~Vya-~DGekIG~V~Dv~vD~~sG~VrYlVVdtG------------------~ggkkVLiPi~---~~~Id~d 205 (259)
T 1eys_H 148 DPDPRGMTVVG-LDGEVAGTVSDVWVDRSEPQIRYLEVEVA------------------ANKKKVLLPIG---FSRFDKK 205 (259)
T ss_dssp SCCCTTCEEEC-SSSCEEEEEEEEEEETTTTEEEEEEEEET------------------TTCCEEEEEGG---GCEEEGG
T ss_pred CCCCcCCEEEe-CCCCeeEEEEEEEEECCCCeEEEEEEEcC------------------CCCCcEEEecC---hhhcccc
Confidence 35799999995 5798899999987 3555567777651 14789999953 5688888
Q ss_pred CCEEEE-eCCC
Q 005946 256 GREMQI-TPPK 265 (668)
Q Consensus 256 ~k~I~V-~~pe 265 (668)
++++.| .+-+
T Consensus 206 ~~~V~V~~lTk 216 (259)
T 1eys_H 206 ARKVKVDAIKA 216 (259)
T ss_dssp GTEEECSSSCG
T ss_pred CCEEEEccCCH
Confidence 888888 4433
No 21
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=93.04 E-value=0.23 Score=51.35 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=52.3
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCC-CCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSEST-ANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~-s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++.+|+||||.|||... ||.+ +++. .++++++... +.+.+.+ . -.++|.|.....+.++++|.....++
T Consensus 5 ~~~~vIlAaG~g~R~~~-~K~l-~~ig~~g~pli~~~l-----~~~~~~~--~-~~i~vv~~~~~~~~~~~~~~~~~~~~ 74 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS-LKQL-DGIGPGGDTIMDYSV-----YDAIRAG--F-GRLVFVIRHSFEKEFREKILTKYEGR 74 (303)
T ss_dssp CCEEEEECTTCBCTTSS-BCCC-CCCSTTSCCHHHHHH-----HHHHHHT--C-CEEEEEECGGGHHHHHHHTHHHHTTT
T ss_pred ceEEEEECCCCcccCCC-CceE-eEcCCCCeeHHHHHH-----HHHHHCC--C-CeEEEEcCchHHHHHHHHHHHHhccC
Confidence 46789999999999543 7843 3444 5788877655 5554432 2 25677787666688999988643344
Q ss_pred CCCCcEEEEecC
Q 005946 485 FDSKKVWFLEEE 496 (668)
Q Consensus 485 l~~~qV~~f~Q~ 496 (668)
. +|.+..|.
T Consensus 75 ~---~i~~~~~~ 83 (303)
T 3pnn_A 75 I---PVELVFQE 83 (303)
T ss_dssp S---CEEEEECC
T ss_pred C---cEEEEecc
Confidence 3 57777776
No 22
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=92.90 E-value=0.18 Score=52.21 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=38.0
Q ss_pred CeEEEEeccCCCCCC---C--CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGN---E--CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg---~--~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.|||. . ..||.+ +++..++++++... +++.+. . -.++|.|+....+.+.+++.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~l-l~i~gg~pli~~~l-----~~l~~~---~-~~i~vv~~~~~~~~i~~~~~~ 72 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQF-LKLFDHKSLFELSF-----KRNASL---V-DETLIVCNEKHYFLALEEIKN 72 (308)
T ss_dssp CEEEEEECC-------------CCGGG-CTTBTTBCHHHHHH-----HHHHTT---C-SEEEEEEEGGGHHHHHHHTTT
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEE-EECCCCCCHHHHHH-----HHHHcc---C-CCEEEEEChhHHHHHHHHHHH
Confidence 467889999999995 3 359943 34445889887765 555442 1 256788877656778888865
No 23
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=92.79 E-value=0.2 Score=50.03 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 405 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
|++++|+||||.|+| |...||.+ .++ .++++++... +.+.+.. ..-.++|.|+....+..++++.
T Consensus 6 ~~~~aIIlAaG~g~Rmg~~~~K~l-~~l-~Gkpll~~~l-----~~~~~~~--~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLAVGVPKAF-YQL-DGQTLIERAV-----DGLLDSG--VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CCEEEEEECCCCCTTTCSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTS--CCCEEEEEECGGGHHHHHHHHG
T ss_pred CceEEEEECCCCCccCCCCCCceE-EEE-CCeEHHHHHH-----HHHHhCC--CCCeEEEECChHHHHHHHHHhc
Confidence 368999999999999 55559953 233 5888876654 5555421 1125777787766566666654
No 24
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=92.38 E-value=1.2 Score=43.66 Aligned_cols=126 Identities=11% Similarity=0.064 Sum_probs=71.2
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++++|++|||.|||.. +|. .++ .++++++... +++.+.+. --.++|.| .++.+.+++++ +|
T Consensus 3 ~~~aiIlA~G~s~R~~--~K~l~~i---~Gkpli~~~i-----~~~~~~~~--~~~ivv~~---~~~~i~~~~~~---~g 64 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP--LKNIKRL---AGVPLIGWVL-----RAALDAGV--FQSVWVST---DHDEIENVAKQ---FG 64 (229)
T ss_dssp CEEEEEECCSCCSSSS--CTTTSEE---TTEEHHHHHH-----HHHHHHTC--CSEEEEEE---SCHHHHHHHHH---TT
T ss_pred cEEEEEEcCCCCCCCC--CcccceE---CCEEHHHHHH-----HHHHhCCC--cCEEEEEC---ChHHHHHHHHH---cC
Confidence 5788999999999953 373 332 4788876654 55554321 11456666 35677888765 34
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc-
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI- 563 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~- 563 (668)
. ++ +.+ .+ .+. .-.+.|.+.+..+|.. + .+-+++.+.+.|+++..
T Consensus 65 ~---~~--~~~-------~~-------~~~-------~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli~~ 110 (229)
T 1qwj_A 65 A---QV--HRR-------SS-------ETS-------KDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCLHP 110 (229)
T ss_dssp C---EE--EEC-------CG-------GGS-------STTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTCCH
T ss_pred C---EE--EeC-------hh-------hhc-------CCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcCCH
Confidence 3 22 211 10 000 0011223444555533 1 25689999999999882
Q ss_pred --cCHHHHHHHHHcCCcEEEEEe
Q 005946 564 --GNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 564 --~DP~flG~~~~~~~d~~~kvV 584 (668)
.+ .++..+...++++..-++
T Consensus 111 ~~i~-~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 111 TDLQ-KVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp HHHH-HHHHHHHSSCCSEEEEEE
T ss_pred HHHH-HHHHHHHhCCCCEEEEEe
Confidence 22 244555567777655554
No 25
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=91.99 E-value=1 Score=48.25 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=75.8
Q ss_pred CeEEEEeccCCCCCCC----CCCCcccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 406 KKAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
++.+|+||||.|||.. ..||.+ +++ .++ ++++... +++.+.+ . -.++|.|.. ..+.+.+++.+.
T Consensus 12 ~~~avILAaG~gtRl~plT~~~pK~l-lpi-~gk~pli~~~l-----~~l~~~g--i-~~i~vv~~~-~~~~i~~~~~~~ 80 (420)
T 3brk_X 12 DAMAYVLAGGRGSRLKELTDRRAKPA-VYF-GGKARIIDFAL-----SNALNSG--I-RRIGVATQY-KAHSLIRHLQRG 80 (420)
T ss_dssp GEEEEEEECCCCGGGGGGGSSSCGGG-SEE-TTTEETHHHHH-----HHHHHTT--C-CEEEEEECT-TCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCccchhhcCCcccc-ccc-CCCCcHHHHHH-----HHHHhCC--C-CeEEEEeCC-ChHHHHHHHhhh
Confidence 4778999999999943 348942 233 366 8877655 5665532 2 146677765 457888998874
Q ss_pred CCCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCccccc---CCCchHhHHHhhCchHHHHHHcCceEEEEEcC
Q 005946 481 DHFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAP---VGSGGVFSLLSSHNIIKNLDELGVEYIQICTA 557 (668)
Q Consensus 481 ~~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P---~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~v 557 (668)
||+... +.+..++.+... .-...| -|.++.. +. .++.+...+-+++.+.+.
T Consensus 81 --~~~~~~----~~~~~v~i~~~~---------------~~~~~~~~~~Gt~~al---~~--a~~~l~~~~~~~~lv~~~ 134 (420)
T 3brk_X 81 --WDFFRP----ERNESFDILPAS---------------QRVSETQWYEGTADAV---YQ--NIDIIEPYAPEYMVILAG 134 (420)
T ss_dssp --SCCCCG----GGTCEEEEECCC----------------------CCCCHHHHH---HT--THHHHHHHCCSEEEEEES
T ss_pred --hccccc----cccCCEEEeCcc---------------ccccCCccccCCHHHH---HH--HHHHHHhcCCCEEEEecc
Confidence 454321 001111111100 000012 3443322 22 134444445678889988
Q ss_pred CccccccCHHHHHHHHHcCCcEEEEEe
Q 005946 558 NPRNAIGNSMFLGFVKSCGADIGFQIS 584 (668)
Q Consensus 558 DN~l~~~DP~flG~~~~~~~d~~~kvV 584 (668)
|.+....--.++-++...++++..-+.
T Consensus 135 D~~~~~~l~~l~~~~~~~~~~~tl~~~ 161 (420)
T 3brk_X 135 DHIYKMDYEYMLQQHVDSGADVTIGCL 161 (420)
T ss_dssp SCEECBCTHHHHHHHHHTTCSEEEEEE
T ss_pred cEEEchHHHHHHHHHHHcCCeEEEEEe
Confidence 984322223466777777887654433
No 26
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=91.92 E-value=0.21 Score=48.26 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred CeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 005946 406 KKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 477 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f 477 (668)
++.+|+||||.||| |...||. +++ .++++++... +++.+.+. . -.++|.|+....+...+++
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~---~g~pli~~~l-----~~l~~~~~-~-~~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTL---GGTPLLEHAL-----SGLRASGV-I-DRIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEE---TTEEHHHHHH-----HHHHHHSC-C-SEEEEEECGGGHHHHHHHT
T ss_pred ceEEEEECCccCcccCCCCCCeeeEE---CCeEHHHHHH-----HHHhcCCC-C-CeEEEEEcccHHHHHHHHh
Confidence 47889999999999 5445894 443 4788877654 55554321 1 2567777765444455544
No 27
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=91.91 E-value=0.82 Score=45.69 Aligned_cols=127 Identities=6% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++.+|+||||.|||.+ +|.+ +++ .++++++... +++.+.+ . -.++|.|.. +.+.+++++ +|.
T Consensus 2 ~~~aiIlA~G~g~R~~--~K~l-~~~-~gkpli~~~l-----~~l~~~~--~-~~ivvv~~~---~~i~~~~~~---~~~ 63 (262)
T 1vic_A 2 SFTVIIPARFASSRLP--GKPL-ADI-KGKPMIQHVF-----EKALQSG--A-SRVIIATDN---ENVADVAKS---FGA 63 (262)
T ss_dssp CCEEEEECCCCCSSST--TGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEESC---HHHHHHHHH---TTC
T ss_pred CcEEEEEcCCCCCCCC--CCcc-ccC-CCeEHHHHHH-----HHHHhCC--C-ceEEEECCc---HHHHHHHHh---cCC
Confidence 4678999999999953 4842 233 4788877655 5665533 2 256777753 567777765 232
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccc--
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI-- 563 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~-- 563 (668)
.++. ..+ ..+.|.|.+..+ +..+...+-+++.+.+.|+++..
T Consensus 64 -----~~~~-------~~~------------------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i~~~ 107 (262)
T 1vic_A 64 -----EVCM-------TSV------------------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLIPPV 107 (262)
T ss_dssp -----EEEE-------CCC------------------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTCCHH
T ss_pred -----EEEE-------CCc------------------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcCccCHH
Confidence 1111 101 012233322222 22222224678999999998872
Q ss_pred cCHHHHHHHHHcCCcEEEEEeec
Q 005946 564 GNSMFLGFVKSCGADIGFQISEY 586 (668)
Q Consensus 564 ~DP~flG~~~~~~~d~~~kvV~k 586 (668)
.--.++-.+...+++++.-+++.
T Consensus 108 ~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 108 IVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEEEec
Confidence 11234556666677776555543
No 28
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=91.71 E-value=0.26 Score=50.80 Aligned_cols=69 Identities=7% Similarity=0.143 Sum_probs=44.4
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
++..|+||||.|||.. ..|| ++++ .++++++... +.+...+ . =.++|.|+....+.+++++.+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi---~gkpli~~~l-----~~l~~~g--i-~~I~vv~~~~~~~~i~~~l~~g 70 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPV---YDKPMIYYPL-----STLMLAG--I-REILIISTPQDTPRFQQLLGDG 70 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEE---TTEETTHHHH-----HHHHHTT--C-CEEEEEECTTTHHHHHHHHTTS
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeE---CCEeHHHHHH-----HHHHHCC--C-CEEEEEeccccHHHHHHHHhcc
Confidence 3567889999999954 2488 4443 3678877655 5554432 2 1355666666667788888764
Q ss_pred CCCCC
Q 005946 481 DHFAF 485 (668)
Q Consensus 481 ~~FGl 485 (668)
..||+
T Consensus 71 ~~~g~ 75 (293)
T 1fxo_A 71 SNWGL 75 (293)
T ss_dssp GGGTC
T ss_pred cccCc
Confidence 44554
No 29
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=90.83 E-value=0.41 Score=49.42 Aligned_cols=68 Identities=7% Similarity=0.109 Sum_probs=43.2
Q ss_pred eEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+.+|+||||.|||.. ..|| ++++ .++++++... +.+...+ .. .++|.|+....+.+++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l-----~~l~~~g--i~-~Iivv~~~~~~~~i~~~l~~g~ 72 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPL-----SVLMLAG--IR-DILIISTPRDLPLYRDLLGDGS 72 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEE---TTEETTHHHH-----HHHHHTT--CC-EEEEEECTTTHHHHHHHHTTSG
T ss_pred eEEEEECCCCCCccccccCCCCceecEE---CCeeHHHHHH-----HHHHHCC--CC-eEEEEeccchHHHHHHHhhhcc
Confidence 567889999999953 2388 4443 3678877654 5554432 21 4566666566677888887644
Q ss_pred CCCC
Q 005946 482 HFAF 485 (668)
Q Consensus 482 ~FGl 485 (668)
.||+
T Consensus 73 ~~g~ 76 (295)
T 1lvw_A 73 QFGV 76 (295)
T ss_dssp GGTS
T ss_pred ccCc
Confidence 4554
No 30
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=90.68 E-value=0.12 Score=49.81 Aligned_cols=138 Identities=4% Similarity=0.033 Sum_probs=75.2
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++++|+||||.|+|.+. ||.+ +++ .++++++... +++.+ . .++|.|+.. .+.+.+++. .
T Consensus 2 ~~~~iIlAgG~g~Rmg~-~K~l-~~i-~g~pll~~~l-----~~l~~----~--~ivvv~~~~-~~~~~~~~~----~-- 60 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG-DKLL-AKI-DNTPIIMRTI-----RIYGD----L--EKIIIVGKY-VNEMLPLLM----D-- 60 (197)
T ss_dssp CEEEEEECSCCTTCCCS-SGGG-SBS-SSSBHHHHHH-----HHTTT----S--BCCEEECTT-HHHHGGGCT----T--
T ss_pred ceEEEEECCcCcccCCC-Ceee-CEe-CceEHHHHHH-----HHHHh----C--CEEEEECCC-HHHHHHHhc----C--
Confidence 46889999999999433 8842 233 5788876654 44432 1 667777765 233333321 1
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccC
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGN 565 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~D 565 (668)
.+ + +... . ..-.+.++++.+|... . +.+++.+...|.+++ +
T Consensus 61 ---~~-~--------v~~~--------------~---~~~G~~~si~~al~~~------~--~~~~vlv~~~D~P~i--~ 101 (197)
T 3d5n_A 61 ---QI-V--------IYNP--------------F---WNEGISTSLKLGLRFF------K--DYDAVLVALGDMPFV--T 101 (197)
T ss_dssp ---SC-E--------EECT--------------T---GGGCHHHHHHHHHHHT------T--TSSEEEEEETTCCCS--C
T ss_pred ---CE-E--------EECC--------------C---CCCCHHHHHHHHHHhh------c--cCCcEEEEeCCcccc--C
Confidence 12 1 1111 0 0001125666666432 1 247899999999987 4
Q ss_pred HHHHHHHHH---cCCcEEEEEeeccCCCCcccceeeeHHHHHHHh
Q 005946 566 SMFLGFVKS---CGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 607 (668)
Q Consensus 566 P~flG~~~~---~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 607 (668)
+..+-.... .++++..-+..-. .... .+|+.+.+..+.
T Consensus 102 ~~~i~~l~~~~~~~~~~~~~~~~g~--~~~P--~~~~~~~l~~l~ 142 (197)
T 3d5n_A 102 KEDVNKIINTFKPNCKAVIPTHKGE--RGNP--VLISKSLFNEIE 142 (197)
T ss_dssp HHHHHHHHHTCCTTCSEEEEEETTE--ECSC--EEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCc--ccCC--EEECHHHHHHHH
Confidence 444444443 3556554433111 1112 389988887765
No 31
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=90.50 E-value=0.33 Score=48.08 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=73.6
Q ss_pred eEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+.+|+||||.|||.. ..|| ++++ .++++++... +++.+.+ . -.++|.|+.. ++.+++++.+..
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i---~gkpli~~~l-----~~l~~~g--~-~~i~vv~~~~-~~~i~~~~~~~~ 70 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEI---GGKPILWHIM-----KMYSVHG--I-KDFIICCGYK-GYVIKEYFANYF 70 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEE---TTEEHHHHHH-----HHHHHTT--C-CEEEEEECTT-HHHHHHHHHTHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEE---CCEEHHHHHH-----HHHHHCC--C-CEEEEEcccC-HHHHHHHHhhcc
Confidence 567889999999943 2389 4443 4788877655 5565532 2 2567888754 478889987632
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceecc--CCCCCcc----cccCCCchHhHHHhhCchHHHHHHcCceEEEEE
Q 005946 482 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILM--KSPWETL----QAPVGSGGVFSLLSSHNIIKNLDELGVEYIQIC 555 (668)
Q Consensus 482 ~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill--~~~~~i~----~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~ 555 (668)
.++ .++.+..|+. -+ .++- ..++.+. -.+.|.|+...+... .++ +-+++.+.
T Consensus 71 ~~~---~~~~~~~~~~--~~----------~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~lv~ 128 (259)
T 1tzf_A 71 LHM---SDVTFHMAEN--RM----------EVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFLFT 128 (259)
T ss_dssp HHH---SCEEEEGGGT--EE----------EETTCCCCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEEEE
T ss_pred ccc---cccccccccc--ce----------eeeeccccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEEEE
Confidence 111 1233333321 00 0100 0122221 135677765443322 121 23677888
Q ss_pred cCCccccccCHHHHHHHHHcCCcEEEE
Q 005946 556 TANPRNAIGNSMFLGFVKSCGADIGFQ 582 (668)
Q Consensus 556 ~vDN~l~~~DP~flG~~~~~~~d~~~k 582 (668)
+.|++....--.++-++...+++++..
T Consensus 129 ~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 129 YGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp ETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred ECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 888853321124567777777776553
No 32
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=90.49 E-value=0.28 Score=50.68 Aligned_cols=68 Identities=7% Similarity=0.100 Sum_probs=43.6
Q ss_pred eEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+..|+||||.|||.. ..|| ++++ .++++++... +.+...+ . -.++|.|+....+.+++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l-----~~l~~~g--i-~~I~vv~~~~~~~~i~~~l~~g~ 72 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPI---YDKPMIYYPL-----SVLMLAG--I-REILIITTPEDKGYFQRLLGDGS 72 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEE---TTEETTHHHH-----HHHHHTT--C-CEEEEEECTTTHHHHHHHHTTSG
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEE---CCeeHHHHHH-----HHHHhCC--C-CcEEEEechhHHHHHHHHHhccc
Confidence 467889999999953 3489 4443 3678877654 4554432 2 14566666566677888887644
Q ss_pred CCCC
Q 005946 482 HFAF 485 (668)
Q Consensus 482 ~FGl 485 (668)
.||+
T Consensus 73 ~~g~ 76 (296)
T 1mc3_A 73 EFGI 76 (296)
T ss_dssp GGTC
T ss_pred ccCc
Confidence 4564
No 33
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=90.39 E-value=0.47 Score=47.22 Aligned_cols=128 Identities=9% Similarity=0.003 Sum_probs=67.2
Q ss_pred CeEEEEeccCCCCC-CC-CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCC
Q 005946 406 KKAMVLVVHNSEEG-NE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHF 483 (668)
Q Consensus 406 kvavvllAGG~GtR-g~-~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~F 483 (668)
++.+|+||||.||| |. ..||.+ +++ .++++++... +++.+.+ ..=.++|.|+....+...+.+++..
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l-~~l-~Gkpll~~~l-----~~~~~~~--~~~~ivvv~~~~~~~~~~~~~~~~~-- 71 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQF-LPL-NGKPIIVHTV-----EKFILNT--RFDKILISSPKEWMNHAEDNIKKYI-- 71 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGG-SEE-TTEEHHHHHH-----HHHHTCT--TCSEEEEEECGGGHHHHHHHHHHHC--
T ss_pred ccEEEEECCccccccCCCCCCCeE-EEE-CCeeHHHHHH-----HHHHcCC--CCCEEEEEeCHHHHHHHHHHHHHhC--
Confidence 57899999999999 55 349943 233 4788876654 5554421 1225677777765555667776532
Q ss_pred CCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHH----cCceEEEEEcCCc
Q 005946 484 AFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDE----LGVEYIQICTANP 559 (668)
Q Consensus 484 Gl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~----~Gi~yi~v~~vDN 559 (668)
.+ ..+.+. + .. . +. .++++.+|. .+.. .+.+++.|.+.|.
T Consensus 72 -~~-~~~~~~-~-------~~-~----~~---------------~~sv~~al~------~l~~~~~~~~~~~vlv~~~d~ 115 (246)
T 3f1c_A 72 -SD-DRIVVI-E-------GG-E----DR---------------NETIMNGIR------FVEKTYGLTDDDIIVTHDAVR 115 (246)
T ss_dssp -CC-TTEEEE-E-------CC-S----SH---------------HHHHHHHHH------HHHHHTCCCTTCEEEEEETTC
T ss_pred -CC-CCEEEE-C-------CC-C----ch---------------HHHHHHHHH------HHhhhhcCCCCCEEEEecCcc
Confidence 11 112211 0 00 0 11 134555553 3443 2468999999999
Q ss_pred cccc--cCHHHHHHHHHcCCcEE
Q 005946 560 RNAI--GNSMFLGFVKSCGADIG 580 (668)
Q Consensus 560 ~l~~--~DP~flG~~~~~~~d~~ 580 (668)
+++. .--.++-.+...++.+.
T Consensus 116 Pli~~~~i~~li~~~~~~~a~i~ 138 (246)
T 3f1c_A 116 PFLTHRIIEENIDAALETGAVDT 138 (246)
T ss_dssp TTCCHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhcCCEEE
Confidence 9882 22234566666665444
No 34
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=90.11 E-value=0.31 Score=46.31 Aligned_cols=62 Identities=3% Similarity=-0.016 Sum_probs=38.1
Q ss_pred EEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 408 AMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 408 avvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
.+|++|||.|||.+..||.+ .++ .++++++... +++.+.+ -=.++|.|+.. ++.+.+++.+.
T Consensus 2 ~aiIlA~G~s~R~~~~~K~l-~~~-~g~pli~~~l-----~~l~~~~---~~~v~vv~~~~-~~~i~~~~~~~ 63 (196)
T 3rsb_A 2 DALIMAGGKGTRMGGVEKPL-IKL-CGRCLIDYVV-----SPLLKSK---VNNIFIATSPN-TPKTKEYINSA 63 (196)
T ss_dssp EEEEEC----CGGGGSCGGG-CEE-TTEEHHHHHH-----HHHHSSS---CCCEEEECCTT-CHHHHHHHHHH
T ss_pred EEEEECCCCCCcCCCCCccE-EEE-CCEEHHHHHH-----HHHHHCC---CCEEEEEeCCC-hHHHHHHHHhh
Confidence 46889999999943378843 233 5788877655 5555432 12678888766 67888898873
No 35
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=89.91 E-value=0.43 Score=46.38 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=35.3
Q ss_pred eEEEEeccCCCCC-CC-CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 407 KAMVLVVHNSEEG-NE-CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 407 vavvllAGG~GtR-g~-~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+.+|+||||.||| |. ..||.+ +++ .++++++... +++.+.+ .. -.++|.|+....+.+++++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~~-~~-~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQF-LEL-GDRPILIHTI-----EKFVLEP-SI-EKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGG-SEE-TTEEHHHHHH-----HHHHTCT-TC-CCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCee-eee-CCccHHHHHH-----HHHHcCC-CC-CeEEEEeCHHHHHHHHHHHHh
Confidence 5678999999999 44 238942 233 4788877655 5554421 11 256788877665778888765
No 36
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=89.50 E-value=0.76 Score=41.40 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=50.9
Q ss_pred ccchhccCCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCcccee
Q 005946 176 EFYTRDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIV 252 (668)
Q Consensus 176 EfY~~DLIG~~V~d~~~G~~lG~V~dV~-~--~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~V 252 (668)
-+=..||+|..|++ .+|+.+|+|.||+ + +|.-.-++|... |.. +.+++.++||+-.- ++
T Consensus 14 l~~~~~l~G~~V~~-~dG~~iG~V~dv~iD~~~G~i~~~vv~~G---------gfl-----G~g~~~v~ip~~~l---~~ 75 (120)
T 3htr_A 14 LIGSDKVQGTAVYG-PDGEKIGSIERVMIEKVSGRVSYAVLSFG---------GFL-----GIGDDHYPLPWPAL---KY 75 (120)
T ss_dssp EEEHHHHTTCEEEC-TTSCEEEEEEEEEEETTTCBEEEEEEEES---------SBT-----TBSCEEEEECGGGC---EE
T ss_pred eEehhhccCCEEEc-CCCCEEEEEEEEEEECCCCcEEEEEEECC---------Ccc-----CcCCEEEEeCHHHe---EE
Confidence 35578999999996 4898999999987 3 444445666541 100 11357899999852 58
Q ss_pred ecCCCEEEEeCCCCcc
Q 005946 253 DMNGREMQITPPKGLL 268 (668)
Q Consensus 253 Dle~k~I~V~~peGLL 268 (668)
|.+++.+.+...+.-|
T Consensus 76 ~~~~~~~~v~~tkeql 91 (120)
T 3htr_A 76 NVELGGYQVMVTVDQL 91 (120)
T ss_dssp ETTTTEEECCCCHHHH
T ss_pred ecCCCEEEeCCCHHHH
Confidence 8888888776554433
No 37
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=89.50 E-value=0.39 Score=48.53 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=40.8
Q ss_pred eEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 407 KAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
+.+|+||||.|||.. ..|| +++ + .++++++... +++.+.+ . -.++|.|+ ...+.+.++|.+.
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~--i-~gkpli~~~l-----~~l~~~g--i-~~i~vv~~-~~~~~i~~~~~~~ 69 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLP--I-VDKPLIQYAV-----EEAMEAG--C-EVMAIVTG-RNKRSLEDYFDTS 69 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCB--S-SSSBHHHHHH-----HHHHHHT--C-CEEEEEEC-TTHHHHHHHTSCC
T ss_pred eEEEEECCcCCcccCccccCCCcccce--E-CCEEHHHHHH-----HHHHhCC--C-CEEEEEec-CCHHHHHHHHhcc
Confidence 467899999999942 4489 444 3 3678877765 5565543 1 24566666 3457888888653
No 38
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=89.13 E-value=0.44 Score=46.32 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 405 gkvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.++.+|+||||.||| |...||.+ +++ .++++++... +++.+.+ .. -.++|.|+... +.+.+ +.+
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l-~~~-~gkpli~~~l-----~~l~~~~-~~-~~ivvv~~~~~-~~~~~-~~~ 69 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQY-VEI-GSKTVLEHVL-----GIFERHE-AV-DLTVVVVSPED-TFADK-VQT 69 (231)
T ss_dssp CCEEEEEECC----------CCSC-CEE-TTEEHHHHHH-----HHHHTCT-TC-CEEEEECCTTC-STHHH-HHH
T ss_pred CceEEEEEcccccccCCCCCCceE-eEE-CCeEHHHHHH-----HHHHcCC-CC-CeEEEEECccH-HHHHH-HHh
Confidence 468899999999999 44348943 233 4889877655 5555421 11 25677776543 34555 544
No 39
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=89.02 E-value=0.7 Score=44.99 Aligned_cols=126 Identities=10% Similarity=0.027 Sum_probs=71.2
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFA 484 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FG 484 (668)
++++|+||||.|||.+ ||. +++ .++++++... +++.+.+. . -.++|.|. ++.+.+++++ +|
T Consensus 4 ~~~aiIlA~G~g~R~~--~K~l~~i---~gkpll~~~l-----~~~~~~~~-~-~~ivvv~~---~~~i~~~~~~---~~ 65 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP--LKNLRKM---NGISLLGHTI-----NAAISSKC-F-DRIIVSTD---GGLIAEEAKN---FG 65 (228)
T ss_dssp EEEEEEECCSSCSSST--TTTTCEE---TTEEHHHHHH-----HHHHHHCC-C-SEEEEEES---CHHHHHHHHH---TT
T ss_pred ceEEEEecCCCCCCCC--Cccccee---CCcCHHHHHH-----HHHHhCCC-C-CEEEEECC---CHHHHHHHHH---cC
Confidence 4788999999999954 894 443 4888877655 55554321 1 25677774 3566777765 34
Q ss_pred CCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCc---hHhHHHhhCchHHHHHHcCceEEEEEcCCccc
Q 005946 485 FDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG---GVFSLLSSHNIIKNLDELGVEYIQICTANPRN 561 (668)
Q Consensus 485 l~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~G---gv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l 561 (668)
. ++ +. .. .. ....|.| +++.+| +.+ ..+.+++.+++.|+++
T Consensus 66 ~---~~--~~--------~~--------------~~--~~~~~~g~~~sv~~~l------~~~-~~~~d~vlv~~~D~P~ 109 (228)
T 1ezi_A 66 V---EV--VL--------RP--------------AE--LASDTASSISGVIHAL------ETI-GSNSGTVTLLQPTSPL 109 (228)
T ss_dssp C---EE--EE--------CC--------------C--------CHHHHHHHHHH------HHH-TCCSEEEEECCTTCTT
T ss_pred C---EE--Ee--------Cc--------------hH--HcCCCCChHHHHHHHH------HHh-CCCCCEEEEEcCCCCc
Confidence 3 22 11 11 00 1112222 233333 223 2356899999999998
Q ss_pred cccCHHHHHHHH----HcCCcEEEEEeecc
Q 005946 562 AIGNSMFLGFVK----SCGADIGFQISEYA 587 (668)
Q Consensus 562 ~~~DP~flG~~~----~~~~d~~~kvV~k~ 587 (668)
. +|..+--.. ..++++..-+++..
T Consensus 110 ~--~~~~i~~l~~~~~~~~~~~~~~~~~~~ 137 (228)
T 1ezi_A 110 R--TGAHIREAFSLFDEKIKGSVVSACPME 137 (228)
T ss_dssp C--CHHHHHHHHTTCCTTTCCCEEEEEECS
T ss_pred C--CHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 8 444444333 44667777666655
No 40
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=88.97 E-value=0.54 Score=44.31 Aligned_cols=143 Identities=10% Similarity=-0.027 Sum_probs=76.7
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++.+|+||||.|||.+ .||.+ +++ .++++++... +++.+.+ + -.++|.|+.. .+.+.+++.+ +|+
T Consensus 5 ~~~~iIlA~G~~~R~g-~~K~l-~~~-~g~pll~~~l-----~~l~~~~--~-~~i~vv~~~~-~~~~~~~~~~---~~~ 69 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG-TPKQL-LPY-RDTTVLGATL-----DVARQAG--F-DQLILTLGGA-ASAVRAAMAL---DGT 69 (197)
T ss_dssp EEEEEEEECCCCTTTS-SCGGG-SEE-TTEEHHHHHH-----HHHHHTT--C-SEEEEEECTT-HHHHHHHSCC---TTS
T ss_pred ceEEEEECCCCcccCC-CCeEc-Cee-CCccHHHHHH-----HHHHhcC--C-CcEEEEeCCC-HHHHHHHhcc---CCC
Confidence 5788999999999953 68842 233 4788877655 5555432 1 2567777654 4455554432 221
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCC-CchHhHHHhhCchHHHHHHcCceEEEEEcCCcccccc
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVG-SGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 564 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G-~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~ 564 (668)
.+ +... .+ +.| .++++.++..- ..+.+++.+...|.++.
T Consensus 70 -----~~--------~~~~-------------~~-----~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~-- 109 (197)
T 2wee_A 70 -----DV--------VVVE-------------DV-----ERGCAASLRVALARV-------HPRATGIVLMLGDQPQV-- 109 (197)
T ss_dssp -----EE--------EECC----------------------CCHHHHHHHHTTS-------CTTEEEEEEEETTCTTC--
T ss_pred -----EE--------EECC-------------Cc-----ccCHHHHHHHHHHHh-------cccCCeEEEEeCCcCCC--
Confidence 11 1111 00 113 24566666432 12568999999999887
Q ss_pred CHHHHHHHH--HcCCcEEEEEeeccCCCCcccceeeeHHHHHHHh
Q 005946 565 NSMFLGFVK--SCGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 607 (668)
Q Consensus 565 DP~flG~~~--~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 607 (668)
++..+-... ..++++..-+..-. +... .+|+.+.+..+.
T Consensus 110 ~~~~i~~l~~~~~~~~i~~~~~~g~--~~~P--~~~~~~~l~~l~ 150 (197)
T 2wee_A 110 APATLRRIIDVGPATEIMVCRYADG--VGHP--FWFSRTVFGELA 150 (197)
T ss_dssp CHHHHHHHHHHGGGSSEEEEEETTE--EEEE--EEEEGGGHHHHH
T ss_pred CHHHHHHHHhhcCCCCEEEEecCCC--cCCC--EEECHHHHHHHH
Confidence 333333333 34555543222100 0111 378888877764
No 41
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=88.77 E-value=2.3 Score=45.85 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred eEEEEeccCCCCCCC----CCCCcccccCCCCc-hhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCC
Q 005946 407 KAMVLVVHNSEEGNE----CDPHSVVSESTANK-SLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDND 481 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK~~~i~l~s~k-sl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~ 481 (668)
+.+|+||||.|||.. ..||.+ +++ .++ ++++... +++.+.+ . -.++|.|.. ..+.+.++|.+.
T Consensus 21 ~~avILAaG~gtRl~plT~~~pK~l-lpi-~g~~pli~~~l-----~~l~~~g--~-~~i~vv~~~-~~~~i~~~~~~~- 88 (451)
T 1yp2_A 21 VLGIILGGGAGTRLYPLTKKRAKPA-VPL-GANYRLIDIPV-----SNCLNSN--I-SKIYVLTQF-NSASLNRHLSRA- 88 (451)
T ss_dssp EEEEEC------CCTTTTTTSCGGG-CEE-TTTEETTHHHH-----HHHHHTT--C-CEEEEEESC-CCHHHHHHHHHH-
T ss_pred eEEEEECCCCCCcccchhcCCccee-eEE-CCcceeHHHHH-----HHHHHCC--C-CEEEEEecc-CHHHHHHHHhhh-
Confidence 678999999999943 239942 233 356 8877655 5665532 2 146777765 456788888753
Q ss_pred CCCCCCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccc
Q 005946 482 HFAFDSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRN 561 (668)
Q Consensus 482 ~FGl~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l 561 (668)
+|.+-. .++.++.+.++... . .+. -...+-|.|+-..+- ++.+...+-+++.+.+.|++.
T Consensus 89 -~~~~~~--~~~~~~~v~i~~~~-~----------~~~-~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~D~~~ 148 (451)
T 1yp2_A 89 -YASNMG--GYKNEGFVEVLAAQ-Q----------SPE-NPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAGDHLY 148 (451)
T ss_dssp -CC----------CCEEEEEESC-S----------STT-SCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECSCEEC
T ss_pred -hhcccc--cccccCcEEEeccc-c----------ccc-ccccccCcHHHHHHH-----HHHHHhcCCCeEEEecCcEEE
Confidence 221000 01112212222111 0 000 001134554332211 233333346889999999943
Q ss_pred cccCHHHHHHHHHcCCcEEE
Q 005946 562 AIGNSMFLGFVKSCGADIGF 581 (668)
Q Consensus 562 ~~~DP~flG~~~~~~~d~~~ 581 (668)
...--.++.++...++++..
T Consensus 149 ~~~l~~l~~~~~~~~~~~tl 168 (451)
T 1yp2_A 149 RMDYEKFIQAHRETDADITV 168 (451)
T ss_dssp CCCHHHHHHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHHHcCCcEEE
Confidence 22112467778788888754
No 42
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=87.54 E-value=0.45 Score=46.41 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=35.1
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccc
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 469 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t 469 (668)
-+..|+||||.||| |...||.+ .++ .++++++... +++.+.+ ..-.++|.|....
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l-~~i-~Gkpli~~~i-----~~l~~~~--~~~~ivVv~~~~~ 68 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQF-LEI-EGRMLFEYPL-----STFLKSE--AIDGVVIVTRREW 68 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-CEE-TTEETTHHHH-----HHHHHCT--TCSEEEEEECGGG
T ss_pred cCeEEEEcCcchhhcCCCCCceE-EEE-CCeEHHHHHH-----HHHHcCC--CCCeEEEEEChHH
Confidence 46789999999999 54448942 223 4788877655 5554422 1125777776544
No 43
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=87.42 E-value=0.79 Score=44.56 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=37.4
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|++|||.|||.+ ||. +++ .++++++... +++.+. . -.++|.|.. +.+.++++
T Consensus 2 ~~~aiIlA~G~g~R~~--~K~l~~i---~g~pli~~~l-----~~~~~~---~-~~i~v~~~~---~~i~~~~~ 58 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK--EKPLKNL---LGKPLIRWVV-----EGLVKT---G-ERVILATDS---ERVKEVVE 58 (234)
T ss_dssp CEEEEEECCSCCTTTT--TGGGCEE---TTEEHHHHHH-----HHHHTT---T-SCEEEEESC---HHHHHHHT
T ss_pred ceEEEEEcCCCCCCCC--CCcceeE---CCEEHHHHHH-----HHHHHh---C-CEEEEECCh---HHHHHHHH
Confidence 4788999999999954 894 443 4788877655 555432 2 246677754 56677765
No 44
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=87.30 E-value=0.56 Score=45.93 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=33.9
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCc
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPA 467 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~ 467 (668)
++.+|+||||.|+| |...||.+ +++ .++++++... +++.+. ...-.++|.|+.
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l-~~i-~g~pll~~~i-----~~l~~~--~~~~~ivvv~~~ 60 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQY-LSI-GNQTILEHSV-----HALLAH--PRVKRVVIAISP 60 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGG-SEE-TTEEHHHHHH-----HHHHTS--TTEEEEEEEECT
T ss_pred ceeEEEECCcCccccCCCCCcce-eeE-CCEEHHHHHH-----HHHHhC--CCCCeEEEEeCc
Confidence 57889999999999 54458942 233 4889877654 555432 111256676654
No 45
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=87.25 E-value=0.63 Score=50.14 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=42.0
Q ss_pred CeEEEEeccCCCCC-CCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEG-NECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
++.+|+||||.||| +...||. +++ .++++++... +.+.+.+ . -.++|.|+.. .+.+++++.+
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~g~pli~~~l-----~~l~~~~--~-~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVI-----DAAMKLG--A-QHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHH-----HHHHHHT--C-SCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCee---CCeeHHHHHH-----HHHHhCC--C-CcEEEEeCCC-HHHHHHHhcc
Confidence 68999999999999 5445994 443 5788877765 5555543 1 2567777765 5677777764
No 46
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=87.20 E-value=0.58 Score=44.09 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=79.0
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCC
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAF 485 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl 485 (668)
++.+|+||||.|||.+ .||.+ +++ .++++++... +++...+ . -.++|.|+.. .+.+.+++.+ +|+
T Consensus 5 ~~~~iIlA~G~~~R~g-~~K~l-~~~-~g~pli~~~l-----~~l~~~~--~-~~i~vv~~~~-~~~~~~~~~~---~~~ 69 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-TPKQL-LPL-GDTTLLGATL-----AMARRCP--F-DQLIVTLGGA-ADEVLEKVEL---DGL 69 (199)
T ss_dssp CEEEEEEESSCCTTTT-SCGGG-CEE-TTEEHHHHHH-----HHHHTSS--C-SEEEEEECTT-HHHHHHHSCC---TTS
T ss_pred ceEEEEECCCCCCCCC-CCEEe-CEe-CccCHHHHHH-----HHHHhCC--C-CcEEEEeCCC-HHHHHHHhcc---CCC
Confidence 5788999999999953 58842 233 4788877654 5554432 1 2567777653 3455555432 232
Q ss_pred CCCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCC-CchHhHHHhhCchHHHHHHcCceEEEEEcCCcccccc
Q 005946 486 DSKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVG-SGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIG 564 (668)
Q Consensus 486 ~~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G-~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~ 564 (668)
.+ +... . .+.| .++++.+|... ..+.+++.+...|.++.
T Consensus 70 ---~~----------~~~~-------------~-----~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~P~~-- 109 (199)
T 2waw_A 70 ---DI----------VLVD-------------D-----AGLGCSSSLKSALTWV-------DPTAEGIVLMLGDQPGI-- 109 (199)
T ss_dssp ---EE----------EECC-------------C-----CCTTCCCHHHHHHHTS-------CTTCSEEEEEETTCTTC--
T ss_pred ---EE----------EECC-------------C-----cccCHHHHHHHHHHhh-------hccCCeEEEEeCCcccC--
Confidence 11 1111 0 1124 45677776542 12568999999999987
Q ss_pred CHHHHHHHH--HcCCcEEEEEeeccCCCCcccceeeeHHHHHHHh
Q 005946 565 NSMFLGFVK--SCGADIGFQISEYAKHSEERFNTMLSMNVMKKLT 607 (668)
Q Consensus 565 DP~flG~~~--~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~ 607 (668)
++..+-... ..++++..-+..-. +. .-.+|+.+.+..+.
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~~~~g~--~~--~P~~~~~~~l~~~~ 150 (199)
T 2waw_A 110 TASAVASLIAGGRGATIAVCEYANG--IG--HPFWVSRGVFGDLA 150 (199)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEETTE--EE--EEEEEEGGGHHHHH
T ss_pred CHHHHHHHHhhcCCCCEEEEecCCc--cc--CCEEEcHHHHHHHH
Confidence 333332222 35666653332111 00 12478888887764
No 47
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=86.36 E-value=1.7 Score=42.41 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=32.2
Q ss_pred CeEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|+||||.|||.+..||.+ +++ .++++++... +++.+. .-.++|.| ..++...+++.
T Consensus 18 ~~~~iIlA~G~g~R~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~----~~~i~vv~--~~~~~~~~~~~ 77 (232)
T 2xme_A 18 LMKAVILAAGLGTRLGGVPKPL-VRV-GGCEIILRTM-----KLLSPH----VSEFIIVA--SRYADDIDAFL 77 (232)
T ss_dssp CEEEEEEECC------CCCGGG-CEE-TTEEHHHHHH-----HHHGGG----EEEEEEEE--STTHHHHHHHH
T ss_pred cceEEEECCcCcCcCCCCCcEE-eEE-CCEEHHHHHH-----HHHHHh----CCEEEEEe--CChHHHHHHHH
Confidence 4788999999999943338942 233 4778877654 455432 12456666 34556666653
No 48
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=86.24 E-value=0.74 Score=44.65 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=31.0
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccc
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 469 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t 469 (668)
++.+|+||||.||| |...||.+ +++ .++++++... +++.+.. .. =.++|.|+...
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l-~~i-~g~pli~~~l-----~~l~~~~-~~-~~ivvv~~~~~ 59 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQY-IPL-LGQPIALYSF-----FTFSRMP-EV-KEIVVVCDPFF 59 (228)
T ss_dssp CEEEEEECCCCC-------CGGG-SEE-TTEEHHHHHH-----HHHHHCT-TE-EEEEEECCGGG
T ss_pred ceEEEEECCccccccCCCCCccE-eEE-CCEEHHHHHH-----HHHHcCC-CC-CeEEEEEChHH
Confidence 57889999999999 53348942 233 4788877654 5554421 11 25677776543
No 49
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=86.13 E-value=0.59 Score=49.18 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=40.1
Q ss_pred EEEEeccCCCCCCC-----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 408 AMVLVVHNSEEGNE-----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 408 avvllAGG~GtRg~-----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
..|+||||.|||+. ..||.+ +++..++++++... +++.... +. -.++|.|.....+.+.+++.+
T Consensus 3 ~~VILAgG~GtRl~Pls~~~~pK~l-l~l~g~~pli~~~l-----~~l~~~~-~~-~~iivvt~~~~~~~i~~~l~~ 71 (336)
T 2x65_A 3 KALILAGGSGERFWPLSTPETPKQF-LKLFGNKSLMRWTF-----ERVLEEM-DP-KDVIVVTHKDYVERTKKELPE 71 (336)
T ss_dssp EEEEECCCBCGGGTTTSCTTCBGGG-CCCBTTBCHHHHHH-----HHHHTTC-CG-GGEEEEEEGGGHHHHHHHCTT
T ss_pred EEEEECCCCCccCCCCcCCCCCceE-EECCCCCcHHHHHH-----HHHhccC-CC-CcEEEEcChHHHHHHHHHhhc
Confidence 56889999999942 249943 34434489988765 6665431 12 245777776555566666653
No 50
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=85.37 E-value=0.72 Score=45.10 Aligned_cols=133 Identities=12% Similarity=0.098 Sum_probs=74.3
Q ss_pred eEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCC
Q 005946 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFD 486 (668)
Q Consensus 407 vavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~ 486 (668)
+..|+||||.|+|.+ .+|.+ +++ .++++++... +++.. . +++|.|.. .+.... +.+. +|+
T Consensus 1 m~aiILAgG~s~Rmg-~~K~l-l~~-~G~pli~~~~-----~~l~~----~--~vvvv~~~--~~~~~~-~~~~--~~~- 60 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-MEKTE-VML-CGKKLIEWVL-----EKYSP----F--QTVFVCRD--EKQAEK-LSSR--YEA- 60 (208)
T ss_dssp CEEEEECCCCCTTTT-SCGGG-CEE-TTEEHHHHHH-----HHHTT----S--EEEEECSS--HHHHHH-HHTT--SCS-
T ss_pred CEEEEECCCchhhCC-CCCcc-cEE-CCeeHHHHHH-----HHhcC----C--CEEEEECC--HHHHHH-HHHh--cCC-
Confidence 357899999999943 68842 233 5888876554 44432 2 78888863 233333 3221 231
Q ss_pred CCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCc---hHhHHHhhCchHHHHHHcCceEEEEEcCCccccc
Q 005946 487 SKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSG---GVFSLLSSHNIIKNLDELGVEYIQICTANPRNAI 563 (668)
Q Consensus 487 ~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~G---gv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~ 563 (668)
+++... +.|.| +++.+|.. + -+++ |...|.+++
T Consensus 61 ------------~~v~d~--------------------~~~~G~~~si~~gl~~------~----~~~v-v~~~D~P~i- 96 (208)
T 3ngw_A 61 ------------EFIWDL--------------------HKGVGSIAGIHAALRH------F----GSCV-VAAIDMPFV- 96 (208)
T ss_dssp ------------CEECCT--------------------TCCCSHHHHHHHHHHH------H----SSEE-EEETTCTTC-
T ss_pred ------------eEEecC--------------------CCCCChHHHHHHHHHH------c----CCCE-EEECCccCC-
Confidence 122111 12333 55555542 2 4789 999999988
Q ss_pred cCHHHH----HHHHHcCCcEEEEEeeccCCCCcccceeeeHHHHHHHhh
Q 005946 564 GNSMFL----GFVKSCGADIGFQISEYAKHSEERFNTMLSMNVMKKLTN 608 (668)
Q Consensus 564 ~DP~fl----G~~~~~~~d~~~kvV~k~~~~~E~~~h~fs~~fl~~~~~ 608 (668)
+|-.+ ......+.++..-+ . ...+.+--+|+.+.+..+..
T Consensus 97 -~~~~i~~l~~~~~~~~~~~v~~~---~-g~~~Pl~al~~~~~~~~l~~ 140 (208)
T 3ngw_A 97 -KPEVLEHLYKEGEKAGCDALIPK---H-DYPEPLLAYYAESAADELER 140 (208)
T ss_dssp -CHHHHHHHHHHHHHHTCSEEEEE---S-SSBCTTEEEECGGGHHHHHH
T ss_pred -CHHHHHHHHHHhhcCCCCEEEEc---C-CCeeEEEEEEcHHHHHHHHH
Confidence 34333 33333477765433 2 23455555688877766533
No 51
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=84.03 E-value=1 Score=44.50 Aligned_cols=34 Identities=6% Similarity=0.109 Sum_probs=19.7
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHH
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQT 442 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ 442 (668)
++++|+||||.||| |.. ||.+ +++ .++++++...
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l-~~i-~gkpli~~~l 59 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAF-LQV-GGRTLLEWTL 59 (236)
T ss_dssp CCEEEEECCC-------C-CGGG-CBC-SSSBHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeE-EEE-CCEEHHHHHH
Confidence 57889999999999 544 8943 233 4788876654
No 52
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=83.15 E-value=1.3 Score=47.66 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCeEEEEeccCCCCCC-CCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 405 GKKAMVLVVHNSEEGN-ECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 405 gkvavvllAGG~GtRg-~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
-++.+|+||||.|||. ...||. +++ .++++++... +++.+.+ . -.++|.|+.. .+.+++++.+
T Consensus 4 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i---~gkpli~~~l-----~~l~~~~--~-~~iivv~~~~-~~~i~~~~~~ 68 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYSDLPKVLHTI---AGKPMVKHVI-----DTAHQLG--S-ENIHLIYGHG-GDLMRTHLAN 68 (456)
T ss_dssp CCEEEEEECCCCCGGGCSSSCGGGSEE---TTEEHHHHHH-----HHHHHTT--C-SCEEEEECTT-HHHHHHHTTT
T ss_pred CcceEEEECCCCCcccCCCCCccccEE---CCccHHHHHH-----HHHHhCC--C-CcEEEEeCCC-HHHHHHHhhc
Confidence 3688899999999994 445894 443 4788877665 5665532 1 2456777653 4566666643
No 53
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=82.96 E-value=0.62 Score=49.05 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=36.4
Q ss_pred eEEEEeccCCCCCC-----CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHH
Q 005946 407 KAMVLVVHNSEEGN-----ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLE 474 (668)
Q Consensus 407 vavvllAGG~GtRg-----~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~ 474 (668)
+..|+||||.|||+ ...||.+ +++..++++++... +++.... +. -.++|.|.......+.
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~l-l~l~G~~pli~~~l-----~~l~~~~-~~-~~iiVvt~~~~~~~i~ 67 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPF-LPLFEGKTLLEATL-----ERLAPLV-PP-ERTLLAVRRDQEAVAR 67 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGG-CBCGGGCBHHHHHH-----HHHTTTS-CG-GGEEEEEEGGGHHHHG
T ss_pred eEEEEEcCCCcccCCccCCCCCCceE-EEcCCCChHHHHHH-----HHHhCcC-CC-CCEEEEcChHHHHHHH
Confidence 67899999999995 2349943 34434489887765 5654431 12 2456777654333333
No 54
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=82.06 E-value=0.8 Score=46.06 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=34.1
Q ss_pred EEEeccCCCCCC---CC-CCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 409 MVLVVHNSEEGN---EC-DPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 409 vvllAGG~GtRg---~~-~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
+|+||||.|||. .. -|| ++++ .++++++... +++... .+. -.++|.|.... + +.+++++
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv---~gkpli~~~l-----~~l~~~-~gi-~~iivv~~~~~-~-~~~~~~~ 65 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEA---HGQTLFEHSV-----NSFAAY-FAS-TPFLFIVRNVY-D-TAVFVRE 65 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEE---TTEEHHHHHH-----GGGGGG-TTT-SCEEEEEESST-T-HHHHHHH
T ss_pred EEEEcCCCCcccccCCCCCCccccEE---CCeEHHHHHH-----HHHhcc-CCC-ceEEEEECchh-h-hHHHHHH
Confidence 588999999993 22 399 4443 4788877655 444331 112 14556665442 2 5555554
No 55
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=81.73 E-value=1.2 Score=44.67 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=38.2
Q ss_pred CeEEEEeccCCCCCCC----CCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE----CDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
++.+|+||||.|||.. ..||.+ +++ .++++++... +++.+.+ . -.++|.|... .+.+..+.+
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~-~~i~vv~~~~-~~~i~~~~~ 90 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKAL-VQV-NQKPLIEYQI-----EFLKEKG--I-NDIIIIVGYL-KEQFDYLKE 90 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGG-CEE-TTEEHHHHHH-----HHHHHTT--C-CCEEEEECTT-GGGGTHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEE-eeE-CCEEHHHHHH-----HHHHHCC--C-CeEEEEeCCc-HHHHHHHHH
Confidence 5788999999999943 348942 233 5789887765 5665542 2 1456777643 233444443
No 56
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=81.09 E-value=1.4 Score=44.94 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=40.6
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.+.+|+||||.|||.. ..|| ++++ .++++++... +++.+.+ .. .++|.|+.. .+.++++|.+
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l-----~~l~~~g--~~-~i~vv~~~~-~~~i~~~~~~ 80 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPV---VDRPLIQYAV-----DEAVEAG--IE-QMIFVTGRG-KSALEDHFDI 80 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEE---TTEEHHHHHH-----HHHHHTT--CC-EEEEEECTT-CHHHHHHTSC
T ss_pred ccEEEEECCCCccccCccccCCCceeeeE---CCeEHHHHHH-----HHHHhCC--CC-EEEEEeCCC-HHHHHHHHhh
Confidence 4678899999999943 3489 4443 3688877665 5665532 22 456767654 6777777653
No 57
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=80.80 E-value=2.7 Score=36.31 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=27.3
Q ss_pred ccch-hccCCcEEEEccCCeEeEEEEEec-c--CCCceEEEE
Q 005946 176 EFYT-RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHV 213 (668)
Q Consensus 176 EfY~-~DLIG~~V~d~~~G~~lG~V~dV~-~--~ga~DlL~V 213 (668)
-... .+|.|.+|++ .+|+.+|+|.|+. + +|.-.-++|
T Consensus 20 ~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl 60 (97)
T 1pm3_A 20 HMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVL 60 (97)
T ss_dssp CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEE
T ss_pred EEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEE
Confidence 3455 7999999997 7899999999985 3 444334444
No 58
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=80.52 E-value=1.4 Score=42.42 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=33.9
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCcc
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPAL 468 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~ 468 (668)
++.+|+||||.|+|.+..||. +++ .++++++... +++... + -.++|.|+..
T Consensus 6 ~~~~iILAgG~s~Rmg~~~K~ll~i---~G~pli~~~l-----~~l~~~---~-~~ivvv~~~~ 57 (201)
T 1e5k_A 6 TITGVVLAGGKARRMGGVDKGLLEL---NGKPLWQHVA-----DALMTQ---L-SHVVVNANRH 57 (201)
T ss_dssp SEEEEEECCCCCSSSCSSCGGGSEE---TTEEHHHHHH-----HHHHHH---C-SCEEEECSSS
T ss_pred cceEEEEcCCCCCcCCCCCCceeeE---CceeHHHHHH-----HHHHhh---C-CEEEEEcCCc
Confidence 578999999999995446884 433 4788877654 444321 1 2567777654
No 59
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=80.03 E-value=5.6 Score=42.87 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=35.7
Q ss_pred EEEEeccCCCCCC-CCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHH
Q 005946 408 AMVLVVHNSEEGN-ECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLF 477 (668)
Q Consensus 408 avvllAGG~GtRg-~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f 477 (668)
-+|+||||.|||. ...||.+ +++ .++++++... +++.+.+ . -.++|.|+.. .+.+.+++
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l-~~i-~gkpli~~~l-----~~l~~~g--~-~~iivv~~~~-~~~i~~~~ 72 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVL-HKV-AGISMLEHVF-----RSVGAIQ--P-EKTVTVVGHK-AELVEEVL 72 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGG-SEE-TTEEHHHHHH-----HHHHTTC--C-SEEEEEECTT-HHHHHHSS
T ss_pred cEEEEcCCCCccCCCCCCcEe-eEE-CCccHHHHHH-----HHHHhcC--C-CCEEEEECCC-HHHHHHHh
Confidence 4688999999994 4458942 233 4778877655 5655432 1 2466777654 34444443
No 60
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=79.05 E-value=3.1 Score=42.31 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=42.4
Q ss_pred hccCCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCC
Q 005946 180 RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (668)
Q Consensus 180 ~DLIG~~V~d~~~G~~lG~V~dV~-~--~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~ 256 (668)
.|+.|+.|+. .+|+.+|+|.|++ + ++--=.|||++. ..++.+|||+.- ..||-
T Consensus 150 ~D~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG------------------gggrkVLLP~~~---~riD~-- 205 (258)
T 2wjn_H 150 VDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVA------------------GSARTALIPLGF---CDVKK-- 205 (258)
T ss_dssp CCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEET------------------TTTEEEEEEGGG---CEECS--
T ss_pred CCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEcC------------------CCCCEEEeeeEE---EEEcC--
Confidence 4899999995 6899999999986 3 343356777752 146889999874 45665
Q ss_pred CEEEE
Q 005946 257 REMQI 261 (668)
Q Consensus 257 k~I~V 261 (668)
+++.|
T Consensus 206 ~~VyV 210 (258)
T 2wjn_H 206 DKIVV 210 (258)
T ss_dssp SCEEC
T ss_pred CeEEE
Confidence 66777
No 61
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=78.77 E-value=3.3 Score=42.08 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.9
Q ss_pred hccCCcEEEEccCCeEeEEEEEec-c--CCCceEEEEEeccccccccCcccccccCCCCCCcEEEEecccCccceeecCC
Q 005946 180 RDLVGMRVVMKETGELVGTVVNVF-N--SGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVWIPFVEEIVPIVDMNG 256 (668)
Q Consensus 180 ~DLIG~~V~d~~~G~~lG~V~dV~-~--~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevLIPfv~~fV~~VDle~ 256 (668)
.|+.|+.|+. .+|+.+|+|.|++ + ++--=.|||++. .++.+|||+.- ..||-
T Consensus 146 ~d~~G~~Vyg-~DGe~iGsV~Dl~VD~~eg~VRYLVVdtG-------------------ggrkVLLP~~~---~riD~-- 200 (260)
T 1rzh_H 146 KNPIGLPVRG-CDLEIAGKVVDIWVDIPEQMARFLEVELK-------------------DGSTRLLPMQM---VKVQS-- 200 (260)
T ss_dssp CCCTTCEEEE-TTSCEEEEEEEEEEETTTTEEEEEEEECT-------------------TSCEEEEEGGG---CEECS--
T ss_pred CCCCCCEeEc-CCCCeeEEEEEEEEECCCCEEEEEEEEeC-------------------CCCEEEeeeEE---EEEcC--
Confidence 4899999996 5899999999986 3 343356777641 46889999874 45665
Q ss_pred CEEEE
Q 005946 257 REMQI 261 (668)
Q Consensus 257 k~I~V 261 (668)
+++.|
T Consensus 201 ~~VyV 205 (260)
T 1rzh_H 201 NRVHV 205 (260)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 67777
No 62
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=77.74 E-value=2.2 Score=45.60 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=33.7
Q ss_pred CeEEEEeccCCCCC-CCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCC
Q 005946 406 KKAMVLVVHNSEEG-NECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 466 (668)
Q Consensus 406 kvavvllAGG~GtR-g~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS 466 (668)
++++|+||||.||| |...||.+ .++ .++++++... +++.+.. .. -.++|.|+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~l-l~l-~GkPLi~~~l-----~~l~~~~-~~-~~IvVvt~ 55 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQF-LRL-GNDPLWLYAT-----KNLSSFY-PF-KKIVVTSS 55 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGG-CEE-BTEEHHHHHH-----HHHHTTS-CC-SCEEEEES
T ss_pred ccEEEEECCCCCccCCCCCCcce-EEE-CCeEHHHHHH-----HHHHccC-CC-CeEEEEcC
Confidence 57889999999999 54458943 223 4788877655 5554321 11 25677776
No 63
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=76.58 E-value=3.1 Score=42.28 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=41.0
Q ss_pred CeEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHH
Q 005946 406 KKAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLD 479 (668)
Q Consensus 406 kvavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~ 479 (668)
.+.+|+||||.|||.. ..|| ++++ .++++++... +++.+.+ .. .++|.|+.. .+.++++|.+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l-----~~l~~~g--i~-~i~vv~~~~-~~~i~~~~~~ 74 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVV-----NECIAAG--IT-EIVLVTHSS-KNSIENHFDT 74 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHH-----HHHHHTT--CC-EEEEEECGG-GHHHHHHHSC
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEE---CCeEHHHHHH-----HHHHHCC--CC-EEEEEeCCC-HHHHHHHHhc
Confidence 3677899999999943 2389 4443 4688877765 5665532 21 456777654 6778888764
No 64
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=76.29 E-value=2 Score=44.51 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=38.2
Q ss_pred eEEEEeccCCCCCCC----CCCC-cccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHH
Q 005946 407 KAMVLVVHNSEEGNE----CDPH-SVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFL 478 (668)
Q Consensus 407 vavvllAGG~GtRg~----~~pK-~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~ 478 (668)
+.+|+||||.|||.. ..|| ++++ .++++++... +++.+.+ .. .++|.|+.. .+.+.++|.
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l-----~~l~~~g--i~-~iivv~~~~-~~~i~~~~~ 77 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPV---VDTPGIELIA-----AEAAELG--AT-RLAIITAPN-KAGVLAHFE 77 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHH-----HHHHHTT--CC-EEEEEECTT-CHHHHHTTS
T ss_pred eEEEEECCCCccccCccccCCCceeeeE---CCEEHHHHHH-----HHHHhCC--CC-EEEEEecCc-HHHHHHHHh
Confidence 567899999999943 3489 4443 3688877665 5655432 21 456677653 466666653
No 65
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=75.52 E-value=1.5 Score=42.01 Aligned_cols=51 Identities=6% Similarity=-0.054 Sum_probs=32.2
Q ss_pred CeEEEEeccCCCCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccc
Q 005946 406 KKAMVLVVHNSEEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALE 469 (668)
Q Consensus 406 kvavvllAGG~GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t 469 (668)
++++|+||||.|+|.+ .||. +++ .++++++... +++.+. + -.++|.|+...
T Consensus 14 ~~~~iILA~G~g~Rmg-~~K~ll~i---~g~pll~~~l-----~~l~~~---~-~~i~vv~~~~~ 65 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG-EDKLLYEI---KGKKVIERVY-----ETAKSV---F-KEVYIVAKDRE 65 (201)
T ss_dssp CCEEEEEEESSCCCCS-TTHHHHHH---HHHHHHHHHH-----HHHHTT---C-SEEEEEESCSG
T ss_pred CceEEEECCCCCccCC-CCcccceE---CceEHHHHHH-----HHHHHh---C-CEEEEEeCcHH
Confidence 4788999999999954 6783 333 3677765544 444332 2 35677776543
No 66
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=73.01 E-value=2.9 Score=35.67 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=37.9
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTLLAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
.+..|+|++||+++++|+-+.|..+..-- ..| ....|+|+...-+ ..+...+.
T Consensus 19 ~~taLlkieGV~~~~~a~fylGKrvayv~------~~g-----------------~~iwGKVtr~HGn--sGvVrAkF 71 (87)
T 3j21_c 19 NNVMIIKPLDVNSREEASKLIGRLVLWKS------PSG-----------------KILKGKIVRVHGT--KGAVRARF 71 (87)
T ss_dssp TTCEEEEESSCCSHHHHGGGTTCEEEECC------SSS-----------------CCEEEEEEEECCS--SSCEEEEE
T ss_pred CCeEEEEEcCcCCHHHHHhhcCceEEEEe------CCC-----------------CEEEEEEEeeeCC--CCeEEEEe
Confidence 35789999999999999999999876620 011 1478999988644 33444554
No 67
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=72.65 E-value=2.7 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.2
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEEE
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTLLA 164 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l~v 164 (668)
.+..|+|++||+|+++|+.+.|..+..
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvay 45 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLW 45 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEE
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEE
Confidence 468899999999999999999998755
No 68
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=71.91 E-value=27 Score=34.85 Aligned_cols=123 Identities=8% Similarity=-0.025 Sum_probs=65.4
Q ss_pred eEEEEeccCCCCCCCCCCCcccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHCCCCCCC
Q 005946 407 KAMVLVVHNSEEGNECDPHSVVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDNDHFAFD 486 (668)
Q Consensus 407 vavvllAGG~GtRg~~~pK~~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n~~FGl~ 486 (668)
+.+|++|||.|||.. .|.+ .++ .++++++... . +++.+ .++ =.++|.|. ++.+.+++++ ||.
T Consensus 2 ~~aiIlA~G~stR~~--~K~L-~~i-~GkPli~~~i--~--~~~~~--~~~-~~vvVvt~---~~~i~~~~~~---~g~- 63 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP--GKPL-LLI-HDRPMILRVV--D--QAKKV--EGF-DDLCVATD---DERIAEICRA---EGV- 63 (253)
T ss_dssp EEEEEECCSCCTTST--TGGG-SEE-TTEEHHHHHH--H--HHHTC--TTC-CEEEEEES---CHHHHHHHHT---TTC-
T ss_pred eEEEEEeCCCCCCCC--CCce-eeE-CCeEhHHHHH--H--HHHHh--cCC-CEEEEECC---HHHHHHHHHH---cCC-
Confidence 467899999999953 3732 222 5788754321 0 22222 122 24566664 4777787764 453
Q ss_pred CCcEEEEecCCcccccCCCCccccceeccCCCCCcccccCCCchHhHHHhhCchHHHHHHcCceEEEEEcCCccccccCH
Q 005946 487 SKKVWFLEEEKLPIVSRSPTEQNKFKILMKSPWETLQAPVGSGGVFSLLSSHNIIKNLDELGVEYIQICTANPRNAIGNS 566 (668)
Q Consensus 487 ~~qV~~f~Q~~lP~v~~~~~g~~~gkill~~~~~i~~~P~G~Ggv~~aL~~~gil~~l~~~Gi~yi~v~~vDN~l~~~DP 566 (668)
++. +... . .+.|.+.+..++. .+...+.+++.+++-|+++. +|
T Consensus 64 --~v~---------~~~~--------------~----~~~Gt~~i~~a~~------~~~~~~~d~vlv~~gD~Pli--~~ 106 (253)
T 4fcu_A 64 --DVV---------LTSA--------------D----HPSGTDRLSEVAR------IKGWDADDIIVNVQGDEPLL--PA 106 (253)
T ss_dssp --CEE---------ECCT--------------T----CCCHHHHHHHHHH------HHTCCTTCEEEECCTTCTTC--CH
T ss_pred --eEE---------EeCC--------------C----CCChHHHHHHHHH------hcCcCCCCEEEEEeCCcccC--CH
Confidence 111 1111 0 1234444454443 33223568999999999998 33
Q ss_pred H----HHHHHHHc-CCcEEEEEe
Q 005946 567 M----FLGFVKSC-GADIGFQIS 584 (668)
Q Consensus 567 ~----flG~~~~~-~~d~~~kvV 584 (668)
. ++-.+... ++++++-++
T Consensus 107 ~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 107 QLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp HHHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEeE
Confidence 3 34444444 456654433
No 69
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=67.65 E-value=5.3 Score=42.12 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=38.1
Q ss_pred EEEEeccCCCCCCC----CCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCCccchHHHHHHHHHC
Q 005946 408 AMVLVVHNSEEGNE----CDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLPALEMQMLEKLFLDN 480 (668)
Q Consensus 408 avvllAGG~GtRg~----~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS~~t~~~T~~~f~~n 480 (668)
.+|+||||.|+|.. ..||. +++ .++++++... +++.+.+ . =.++|.|+.. +++++.+.
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i---~g~pli~~~l-----~~l~~~~--~-~~i~vv~~~~----i~~~~~~~ 64 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPI---LSKPLIEYQI-----EYLRKCG--I-RDITVIVSSK----NKEYFEKK 64 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHH-----HHHHHTT--C-CEEEEEECGG----GHHHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeE---CCEeHHHHHH-----HHHHHCC--C-CEEEEEeCHH----HHHHhhcc
Confidence 46899999999953 44894 443 4788877665 5665532 2 2467777765 67777653
No 70
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=66.91 E-value=4.4 Score=36.14 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=39.3
Q ss_pred ceEEEEecCCCCHHHHhcccCCeEEE-eCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 139 KSWILTFEGIDTVEQARPLVGSTLLA-REGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 139 ~~~ivkf~gId~re~Ae~L~G~~l~v-~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
+..|||++||+++++|+-+.|..+.. -+..-. -|-++. ...|+|+...-+ ..+...+.
T Consensus 33 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~------------~g~k~R-----viwGKVtR~HGn--sGvVrAkF 91 (113)
T 4a18_H 33 NQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK------------NGSNYR-----TIWGRIGKAHGN--NGVAVARF 91 (113)
T ss_dssp EEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE------------TTEEEE-----EEEEEEEEEETT--TTEEEEEE
T ss_pred CeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC------------CCCeEE-----EEEEEEEeeeCC--CCeEEEEe
Confidence 57899999999999999999997654 332210 132221 368999998654 34555554
No 71
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=64.91 E-value=6.7 Score=38.25 Aligned_cols=49 Identities=8% Similarity=0.052 Sum_probs=31.2
Q ss_pred CeEEEEeccCC---CCCCCCCCCc-ccccCCCCchhHHHHHHhhhhHHHHhhcCCCcccEEEeCC
Q 005946 406 KKAMVLVVHNS---EEGNECDPHS-VVSESTANKSLALLQTLLSDDQRFVKIENRASMPLVLVLP 466 (668)
Q Consensus 406 kvavvllAGG~---GtRg~~~pK~-~~i~l~s~ksl~~l~~ll~~~e~i~~~~~~~~iPl~IMTS 466 (668)
++.+|+||||. |+|.+..||. +++ .++++++... +++.+.+ . .++|.|.
T Consensus 2 ~~~~vIlAaG~tRl~~r~~~~~K~l~~i---~g~pll~~~l-----~~l~~~~--~--~ivvv~~ 54 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFGVGSKALVPY---RGRPMVEWVL-----EALYAAG--L--SPVYVGE 54 (232)
T ss_dssp CCEEEEECCCBCSGGGTTTCSBGGGSEE---TTEETHHHHH-----HHHHHTT--C--EEEEESC
T ss_pred ceeEEEECCCCCccccccCCCCceeeEE---CCEEHHHHHH-----HHHHhcC--C--EEEEEeC
Confidence 46788999999 6663335884 443 4788877655 5555432 2 6677655
No 72
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=61.14 E-value=4.1 Score=36.00 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=24.8
Q ss_pred CceEEEEecCCCCHHHHhcccCCeEE-EeCC
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTLL-AREG 167 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l~-v~~~ 167 (668)
.+..|+|++||+++++|+-+.|..+. |-+.
T Consensus 25 ~~taLlKIeGV~~~~~a~fylGKrvayvyka 55 (107)
T 3izc_j 25 PNVSLIKIEGVATPQDAQFYLGKRIAYVYRA 55 (107)
T ss_dssp CCEEEEEESSCSTTHHHHTTCCCCCCCCCCC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCCEEEEEEec
Confidence 46889999999999999999999754 3443
No 73
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=59.81 E-value=4.9 Score=35.77 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=40.8
Q ss_pred CceEEEEecCCCCHHHHhcccCCeE-EEeCCCCCCCCCCccchhccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 138 QKSWILTFEGIDTVEQARPLVGSTL-LAREGDRPELEDGEFYTRDLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 138 ~~~~ivkf~gId~re~Ae~L~G~~l-~v~~~dlp~L~edEfY~~DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
.+..|||++||+++++|+-+.|..+ ||-+..-+. -| ...-...|+|+...-+. .+...+.
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~-----------~g-----~k~R~iwGKVtR~HGns--GvVrAkF 89 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS-----------ND-----STIRCIWGKVTRPHGNS--GVVRAKF 89 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSS-----------CC-----CCSCCEECEEEEESSSS--SCEEEEC
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccC-----------CC-----ceEEEEEEEEEeeeCCC--CEEEEEe
Confidence 4688999999999999999999976 566554321 11 11224689999886543 3444554
No 74
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=41.26 E-value=11 Score=32.56 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.7
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRF 106 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f 106 (668)
.+..|+|.++||-.|.|+++.....|-..+
T Consensus 51 rviwGKVtR~HGnsGvVrAkF~~nLP~kA~ 80 (95)
T 1sqr_A 51 KILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (95)
T ss_dssp CCEEEEEEEESSSSSCEEEECSSCCSSSCT
T ss_pred CEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 678999999999999999998887776433
No 75
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=38.56 E-value=16 Score=31.11 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.9
Q ss_pred EEEEEEeccceeeeeEEEEeccCCccc
Q 005946 78 VDVGYVYSVHGLQGEISVKPSTDFPEL 104 (668)
Q Consensus 78 v~IG~I~~~hGlkGeVkV~~~td~pe~ 104 (668)
+.-|+|.++||-.|.|+.+..+..|-.
T Consensus 52 ~iwGKVtr~HGnsGvVrAkF~~nLP~~ 78 (87)
T 3j21_c 52 ILKGKIVRVHGTKGAVRARFEKGLPGQ 78 (87)
T ss_dssp CEEEEEEEECCSSSCEEEEESSCCCSS
T ss_pred EEEEEEEeeeCCCCeEEEEeCCCCChH
Confidence 568999999999999999988877764
No 76
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=37.11 E-value=18 Score=32.23 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=26.3
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCcccccc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 107 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~ 107 (668)
.+.-|+|.++||-.|.|+++.....|-..+.
T Consensus 71 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G 101 (113)
T 4a18_H 71 RTIWGRIGKAHGNNGVAVARFAHNLPPQAIG 101 (113)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSCCCGGGGG
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcC
Confidence 4778999999999999999998888875443
No 77
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=35.64 E-value=18 Score=32.19 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.9
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCccccccC
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFTT 108 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~~ 108 (668)
.+.-|+|.++||-.|.|+++..+..|-..+..
T Consensus 69 R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~G~ 100 (111)
T 3iz5_j 69 RCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGK 100 (111)
T ss_dssp CCEECEEEEESSSSSCEEEECSSCCSTTCCSS
T ss_pred EEEEEEEEeeeCCCCEEEEEeCCCCChHHcCC
Confidence 46789999999999999999988888755543
No 78
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase biosynthetic protein-RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Probab=33.22 E-value=45 Score=29.26 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 183 IG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
+|..|+| ++++.+|+|.||+-.=.+..+.|+.
T Consensus 33 ~na~Vy~-enk~~IGKV~DIfGPV~~pY~sVKp 64 (104)
T 2hvy_B 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (104)
T ss_dssp TTCEEEC-TTCCEEEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889995 7788999999999877777888875
No 79
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=32.14 E-value=14 Score=32.66 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=26.3
Q ss_pred eEEEEEEeccceeeeeEEEEeccCCcccccc
Q 005946 77 FVDVGYVYSVHGLQGEISVKPSTDFPELRFT 107 (668)
Q Consensus 77 ~v~IG~I~~~hGlkGeVkV~~~td~pe~~f~ 107 (668)
.+.-|+|.++||-.|.|+.+..+..|-..+.
T Consensus 65 RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G 95 (107)
T 3izc_j 65 RVMWGKVTRTHGNSGVVRATFRNNLPAKTFG 95 (107)
T ss_dssp CCCCCCEEECSSSSSCEEECCCSCCSTTCCS
T ss_pred EEEEEEEEeeeCCCCeEEEEeCCCCChHHcC
Confidence 3678999999999999999988888875554
No 80
>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C
Probab=29.89 E-value=42 Score=28.09 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=27.3
Q ss_pred CCcEEEEccCCeEeEEEEEeccCCCceEEEEEe
Q 005946 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMC 215 (668)
Q Consensus 183 IG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~ 215 (668)
+|..|++ ++++.+|+|.||+-.=.+..+.|+.
T Consensus 33 ~na~Vy~-e~~~~IGkV~dIfGPv~~pY~sVk~ 64 (82)
T 2ey4_C 33 LNDRVVD-KRLQFVGIVKDVFGPVKMPYVAIKP 64 (82)
T ss_dssp TTCEEEC-TTCCCCEEEEEEEEESSSCEEEEEE
T ss_pred CCCEeEc-CCCCEeEEEEEEECCCCCcEEEEEe
Confidence 5889995 7788899999999877778888886
No 81
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=28.95 E-value=1.6e+02 Score=26.18 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCcEEEEccCCeEeEEEEEeccCCCceEEEEEec
Q 005946 183 VGMRVVMKETGELVGTVVNVFNSGANDLLHVMCY 216 (668)
Q Consensus 183 IG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~ 216 (668)
.+..|++ ++.+.+|+|.||+-.-.+..+.|+..
T Consensus 53 fNapVy~-enK~~IGKVdEIFGPin~~YfsVK~~ 85 (114)
T 3u28_C 53 FNAPIYL-ENKTQVGKVDEILGPLNEVFFTIKCG 85 (114)
T ss_dssp TTCEEEC-TTCCEEEEEEEEESBTTSCEEEEEEC
T ss_pred CCCEeEc-cCCccceeEeEEeCCCCccEEEEEec
Confidence 4788985 77889999999998777777888863
No 82
>2kk4_A Uncharacterized protein AF_2094; protein of unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=24.84 E-value=2.8e+02 Score=23.20 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=37.2
Q ss_pred ccCCcEEEEccCCeEeEEEEEeccCCCceEEEEEeccccccccCcccccccCCCCCCcEEE-EecccCccceeecCCCEE
Q 005946 181 DLVGMRVVMKETGELVGTVVNVFNSGANDLLHVMCYSSVNVIEGSEEASSSASDASGRLVW-IPFVEEIVPIVDMNGREM 259 (668)
Q Consensus 181 DLIG~~V~d~~~G~~lG~V~dV~~~ga~DlL~V~~~~~~~~~~~~g~~~~~~~~~~gkevL-IPfv~~fV~~VDle~k~I 259 (668)
|||=+-|+ .+|+.+|.=.||+. |-|.|+. |.+++ ||.- -|.+|+ ..+|
T Consensus 5 dlIC~~V~--K~g~~~GESIDV~~----~~LivKv---------------------gt~F~~ipl~--~i~~ve--~~ri 53 (95)
T 2kk4_A 5 DLICMYVF--KGEESFGESIDVYG----DYLIVKV---------------------GTEFLAVPKK--SIKSVE--DGRI 53 (95)
T ss_dssp CTTCCEEE--ETTEEEEEEEEEET----TEEEEEE---------------------TTEEEEEETT--TEEEEE--TTEE
T ss_pred eeEEEEEe--cCcceecceeeeec----cEEEEEe---------------------cCeEEeeeHH--Hhhhcc--CCeE
Confidence 88988898 57999999999975 4677764 23444 6653 355665 7888
Q ss_pred EEeC
Q 005946 260 QITP 263 (668)
Q Consensus 260 ~V~~ 263 (668)
.|.-
T Consensus 54 ~i~d 57 (95)
T 2kk4_A 54 VIGE 57 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 8864
Done!