BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005949
(668 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 203/330 (61%), Gaps = 7/330 (2%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+L+TG GFI S+ ++ +P+++++ +DKL Y SN NL + + FVKGD+A
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD 65
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
+LV L+ +D ++H AA++HVD S + F +N+ GT+ LLE+ + RF+
Sbjct: 66 YELVKELV--RKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFV 123
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
HVSTDEVYG+ + + N +L+P++PYSATKA ++MLV+ + R+Y L TR N
Sbjct: 124 HVSTDEVYGDILKGSFTEN---DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTN 180
Query: 189 VYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY 248
YGP QFPEKLIPK I+ A GL +PI+G G NVR +LY ED A E +L KGE +Y
Sbjct: 181 NYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGESREIY 240
Query: 249 NVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLGWSERTI 307
N+ +E+ ++V K I +L E I+ VE+RP +D RY LD K+T L W +
Sbjct: 241 NISAGEEKTNLEVVKIILRLMGKGEEL-IELVEDRPGHDLRYSLDSWKITRDLKWRPKYT 299
Query: 308 WEEGLRKTIEWYTQNPDWWGDVSGALLPHP 337
++EG++KTI+WY +N WW + + HP
Sbjct: 300 FDEGIKKTIDWYLKNEWWWKPLVDERILHP 329
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 194/320 (60%), Gaps = 5/320 (1%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
NIL+TG AGFI S+ + +++Y YKI+ D L Y NL N+ + N+ FVKG+I
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
+ +L+ ++ + I++FAA++HVD S N F N+ GT LLE K I+
Sbjct: 86 NGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-L 144
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 187
+ VSTDEVYG + E + L P +PYS++KA A+ + +AY ++Y LPVI TR +
Sbjct: 145 VQVSTDEVYGSLGKTGRFT--EETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCS 202
Query: 188 NVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHV 247
N YGP Q+PEKLIP + A+ G LP++GDG NVR +L+ D A + +LHKG VG V
Sbjct: 203 NNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEV 262
Query: 248 YNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS-LGWSERT 306
YN+G E+ ++V + I L + I++V +R +D+RY ++ +K + W +
Sbjct: 263 YNIGGNNEKTNVEVVEQIITLLG-KTKKDIEYVTDRLGHDRRYAINAEKXKNEFDWEPKY 321
Query: 307 IWEEGLRKTIEWYTQNPDWW 326
+E+GL++T++WY +N +WW
Sbjct: 322 TFEQGLQETVQWYEKNEEWW 341
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 189/345 (54%), Gaps = 25/345 (7%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
+ ILITG AGFI S + R I N +VV+DKL Y NL +L P S F F K DI
Sbjct: 2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV------ 120
+ + D +MH AA++HVD S F + NI GT+ LLEA +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 121 --TGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 176
RF H+STDEVYG+ + +D E + P++PYSA+KA ++ LV A+ R+
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT---ETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 177 YGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFE 236
YGLP + T +N YGP FPEKLIP IL A+ G LP++G+G +R +LY ED A A
Sbjct: 178 YGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 237 CILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDPETS---------IKFVENRPFN 286
C+ G+VG YN+G ER+ +DV + IC+L + P I FV +RP +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 287 DQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGDVS 330
D RY +D K+ LG + +E G+RKT++WY N WW V
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGMRKTVQWYLANESWWKQVQ 342
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 193/347 (55%), Gaps = 24/347 (6%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
ILITG AGFI S V +I+N + +V +DKL Y NL++L S+ + F DI
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----VTGQI 124
+ + + D +MH AA++HVD S F + NI GT+ LLE + G+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 125 R----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAY 173
+ RF H+STDEVYG+ V N E + P++PYSA+KA ++ LV A+
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAE 233
R+YGLP I T +N YGP FPEKLIP IL A+ G PLPI+G G +R +LY ED A
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHAR 241
Query: 234 AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF------SMDPETSIKFVENRPFND 287
A ++ +G+ G YN+G E++ +DV IC L + I +V +RP +D
Sbjct: 242 ALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301
Query: 288 QRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGDV-SGA 332
+RY +D K++ LGW +E G+RKT+EWY N W +V SGA
Sbjct: 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGA 348
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 186/323 (57%), Gaps = 12/323 (3%)
Query: 9 ILITGAAGFIASHVCNRLIRN-YPEY---KIVVLDKLDYCSNLKNLIPSKASSNFKFVKG 64
+L+TG AGFI SH +L+ YP+ +++VLD L Y N NL P A +FV G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 65 DIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
DI A L+ L +D I+HFAA++HVD S + FT+ N+ GT LL+ C V +
Sbjct: 63 DIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGV 119
Query: 125 RRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
R +HVSTDEVYG D + E+S L P +PY+A+KAG++++ AY R+YGL V T
Sbjct: 120 GRVVHVSTDEVYGSIDSGSWT---ESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 185 RGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEV 244
R N YGP Q PEKLIP F+ + G LP++GDG+NVR +++ +D +L G
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA 236
Query: 245 GHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKL-TSLGWS 303
G +Y++G E ++ + D +S++ V +R +D RY LD K+ LG+
Sbjct: 237 GEIYHIGGGLELTNRELTGILLDSLGAD-WSSVRKVADRKGHDLRYSLDGGKIERELGYR 295
Query: 304 ERTIWEEGLRKTIEWYTQNPDWW 326
+ + +GL +T+ WY +N WW
Sbjct: 296 PQVSFADGLARTVRWYRENRGWW 318
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 186/323 (57%), Gaps = 12/323 (3%)
Query: 9 ILITGAAGFIASHVCNRLIRN-YPEY---KIVVLDKLDYCSNLKNLIPSKASSNFKFVKG 64
+L+TG AGFI SH +L+ YP+ +++VLD L Y N NL P A +FV G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 65 DIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
DI A L+ L +D I+HFAA++HVD S + FT+ N+ GT LL+ C V +
Sbjct: 63 DIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGV 119
Query: 125 RRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
R +HVST++VYG D + E+S L P +PY+A+KAG++++ AY R+YGL V T
Sbjct: 120 GRVVHVSTNQVYGSIDSGSWT---ESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 185 RGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEV 244
R N YGP Q PEKLIP F+ + G LP++GDG+NVR +++ +D +L G
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA 236
Query: 245 GHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKL-TSLGWS 303
G +Y++G E ++ + D +S++ V +R +D RY LD K+ LG+
Sbjct: 237 GEIYHIGGGLELTNRELTGILLDSLGAD-WSSVRKVADRKGHDLRYSLDGGKIERELGYR 295
Query: 304 ERTIWEEGLRKTIEWYTQNPDWW 326
+ + +GL +T+ WY +N WW
Sbjct: 296 PQVSFADGLARTVRWYRENRGWW 318
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 186/331 (56%), Gaps = 17/331 (5%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
KNI++TG AGFI S+ + + N+P+ + VLDKL Y N NL + + V GDI
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL-EAILGDRVELVVGDI 63
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
A A+LV+ L D I+H+AA++H DNS + F N GT+ LLEA + R
Sbjct: 64 ADAELVDKL--AAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD--IR 119
Query: 127 FIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSY 177
F HVSTDEVYG+ + + G+ E + P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 178 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFEC 237
G+ + +N YGP Q EK IP+ I + G+ ++G+G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 238 ILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKL 297
IL KG +G Y +G E+ +V + I + P+ + V +R +D RY +D KL
Sbjct: 240 ILTKGRMGETYLIGADGEKNNKEVLELILEKMGQ-PKDAYDHVTDRAGHDLRYAIDASKL 298
Query: 298 -TSLGWSER-TIWEEGLRKTIEWYTQNPDWW 326
LGW+ + T + EGL +TI+WYT N DWW
Sbjct: 299 RDELGWTPQFTDFSEGLEETIQWYTDNQDWW 329
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 149/318 (46%), Gaps = 30/318 (9%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNF--KFVKGD 65
ILITG AGFI H+ L+ + E + VLD L + +IP + + F K V +
Sbjct: 9 RILITGGAGFIGGHLARALVASGEE--VTVLDDL----RVPPMIPPEGTGKFLEKPVL-E 61
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
+ DL + L+ H A+ V SF ++ N G H LL C G +
Sbjct: 62 LEERDLSDVRLV-------YHLASHKSVPRSFKQPLDYLDNVDSGRH-LLALCTSVG-VP 112
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VITT 184
+ + ST EVYG+ D + E S L P +PY+A+K G EM+ A+ R+ P V
Sbjct: 113 KVVVGSTCEVYGQAD---TLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 185 RGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEV 244
R NVYGP + P+ L+P+ + LP+ GDG R + Y DV + + ++ +
Sbjct: 170 RFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANR-PL 228
Query: 245 GHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSE 304
V N G+ + V DV I L + P + + RP N+ F D L + E
Sbjct: 229 PSVVNFGSGQSLSVNDV---IRILQATSPAAEVARKQPRP-NEITEFRADTALQTRQIGE 284
Query: 305 RTIW---EEGLRKTIEWY 319
R+ EEG+R T+EW+
Sbjct: 285 RSGGIGIEEGIRLTLEWW 302
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 150/321 (46%), Gaps = 24/321 (7%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+L+TG AGFI SH+ L+ E + VLD L + + +P F + D+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLE--VAVLDNL--ATGKRENVPK----GVPFFRVDLR 53
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
+ V + H AAQ V S + + N+ G LLEAC+ G + +
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEKL 112
Query: 128 IHVSTD-EVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
+ ST +YGE E E P +PY+A+KA E + YG+SYGL ++ R
Sbjct: 113 VFASTGGAIYGEVPEGERA--EETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRY 170
Query: 187 NNVYGPNQFPE---KLIPKFILLAMRGLPLPIH-----GDGSNVRSYLYCEDVAEAFECI 238
NVYGP Q P ++ F ++GLP+ ++ GD VR Y+Y DVAEA
Sbjct: 171 GNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230
Query: 239 LHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT 298
L E +YNVGT + +V + + PE ++ RP + +R L KL
Sbjct: 231 LFSLE--GIYNVGTGEGHTTREVLMAVAEAAGKAPE--VQPAPPRPGDLERSVLSPLKLM 286
Query: 299 SLGWSERTIWEEGLRKTIEWY 319
+ GW + ++EG+R T++ +
Sbjct: 287 AHGWRPKVGFQEGIRLTVDHF 307
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 62
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 63 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 113
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 173
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ +++
Sbjct: 174 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNS- 232
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 233 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 290
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL K I ++ + ++ + +P P+ + GR
Sbjct: 291 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPARIKKGR 333
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 150/321 (46%), Gaps = 19/321 (5%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I++TG AGFI SHV ++L + +IVV+D L S + + A + VK D+A+
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESN---EIVVIDNL--SSGNEEFVNEAA----RLVKADLAA 54
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
D+ ++L + + + H AA V N E +NN+ T+ LLEA + G + R +
Sbjct: 55 DDIKDYL---KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIV 110
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
ST VYGE V+ E P + Y A+K E L+ +Y ++ + R N
Sbjct: 111 FTSTSTVYGEA---KVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 189 VYGPNQFPEKLIPKFILLAMRG-LPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHV 247
V G + +I FI+ R L I G+G +SY+Y D +A L E ++
Sbjct: 168 VIG-RRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226
Query: 248 YNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFND-QRYFLDDQKLTSLGWSERT 306
+N+G++ + +V +A+ +C+ + P + D L +KL LGW R
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRY 286
Query: 307 IWEEGLRKTIEWYTQNPDWWG 327
EE +R + ++ D G
Sbjct: 287 NSEEAVRMAVRDLVEDLDEEG 307
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 145/333 (43%), Gaps = 27/333 (8%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
N+++ G AGF+ S++ RL+ ++ V+D L S K +P + F + +
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLE-LGVNQVHVVDNL--LSAEKINVPDHPAVRFS----ETS 86
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
D + + D + H A +S + +NN T L E K ++++
Sbjct: 87 ITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKV 146
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTN---PYSATKAGAEMLVMAYGRSYGLPVITT 184
++ + E D E + N PYS +K E + Y + + LP +
Sbjct: 147 VYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRA 206
Query: 185 RGNNVYGPNQFP-------------EKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDV 231
R NVYGP + + P FI A++G+PLP+ G R +++ EDV
Sbjct: 207 RFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDV 266
Query: 232 AEAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFND--QR 289
A G G VYN+ + KE + D+A I ++ + T + + RP+++ +R
Sbjct: 267 ANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNN--TELDRLPKRPWDNSGKR 324
Query: 290 YFLDDQKLTSLGWSERTIWEEGLRKTIEWYTQN 322
+ ++ LG+S ++GLRKTIEW N
Sbjct: 325 FGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 145/325 (44%), Gaps = 37/325 (11%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
I++TG AGFI SH+ ++L+ Y++VV+D L S + + A + + +K
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVE--LGYEVVVVDNL--SSGRREFVNPSAELHVRDLKDYSW 57
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
A + D + HFAA V S N+ T +LE + TG +R
Sbjct: 58 GAGIKG--------DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTV 108
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 187
+ S+ VYG+ D V+ E P + Y A KA E++ Y R +G+ + R
Sbjct: 109 VFASSSTVYGDAD---VIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 188 NVYGPNQFPEKLIPKFILLAMRGLP--LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVG 245
NV GP + +I FI + +R P L + GDG+ +SYLY D EA K E
Sbjct: 166 NVVGP-RLRHGVIYDFI-MKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEM 223
Query: 246 H----VYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSL- 300
NVG RV+D+A+ + ++ + PE I+ V + P D R + D K +L
Sbjct: 224 DAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPE--IRLVPSTP--DGRGWPGDVKYMTLA 279
Query: 301 --------GWSERTIWEEGLRKTIE 317
GW E ++KT E
Sbjct: 280 VTKLMKLTGWRPTMTSAEAVKKTAE 304
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 157/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI ST VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 145/331 (43%), Gaps = 20/331 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L + +++ V+D + +N+ NF+ + D+
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 84
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT L K G R
Sbjct: 85 VEPLYI-------EVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGA--R 135
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE AY + G+ V
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVA 195
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ L
Sbjct: 196 RIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL-VALXNS 254
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 255 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLXLG 312
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGA 332
W EEGL K I ++ + ++ + G+
Sbjct: 313 WEPVVPLEEGLNKAIHYFRKELEYQANNQGS 343
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S+ VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 145/328 (44%), Gaps = 47/328 (14%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKF---VKG 64
I++TG AGFI SH+ ++L+ Y++VV+D + + + + ++ + +KG
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVE--LGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKG 59
Query: 65 DIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
D+ + HFAA V S N+ T +LE + TG +
Sbjct: 60 DV-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 101
Query: 125 RRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
R + S+ VYG+ D V+ E P + Y A KA E++ Y R +G+ +
Sbjct: 102 RTVVFASSSTVYGDAD---VIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAV 158
Query: 185 RGNNVYGPNQFPEKLIPKFILLAMRGLP--LPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R NV GP + +I FI + +R P L + GDG+ +SYLY D EA K
Sbjct: 159 RYANVVGP-RLRHGVIYDFI-MKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKF 216
Query: 243 EVGH----VYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT 298
E NVG RV+D+A+ + ++ + PE I+ V + P D R + D K
Sbjct: 217 EEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPE--IRLVPSTP--DGRGWPGDVKYM 272
Query: 299 SL---------GWSERTIWEEGLRKTIE 317
+L GW E ++KT E
Sbjct: 273 TLAVTKLMKLTGWRPTMTSAEAVKKTAE 300
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ + D K L W +E + T W +++P + D
Sbjct: 293 EGDLPACWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 162/342 (47%), Gaps = 42/342 (12%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+LITG GF+ S++ + + + ++V D L NL + NF+FV GDI +
Sbjct: 4 LLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
+ V L+ D+ H A Q + S N + N+ GT LLEA + I
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 129 HVSTDEVYGETDE-------------DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
+ ST++VYG+ ++ D G E++QL +PY +K A+ ++ Y R
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 176 SYGLPVITTRGNNVYGPNQFP---EKLIPKFILLAMR---GL--PLPIHGDGSNVRSYLY 227
+GL + R +++YG QF + + F A+ G+ P I G+G VR L+
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 241
Query: 228 CED-VAEAFECILHKGEV-GHVYNVG-----TKKERRVIDVAKDICKLFSMDPETSIKFV 280
ED ++ F + + ++ G+ +N+G + + + +D C + ++F
Sbjct: 242 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNI-------DMRFT 294
Query: 281 ENRPF--NDQRYFLDD-QKLT-SLGWSERTIWEEGLRKTIEW 318
N P +DQR F+ D +K+T ++ WS + ++G++K +W
Sbjct: 295 -NLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDW 335
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 144/320 (45%), Gaps = 23/320 (7%)
Query: 10 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASA 69
LITG AGF+ ++ N L E N + +P N + + DI +
Sbjct: 16 LITGVAGFVGKYLANHLTEQNVEV-------FGTSRNNEAKLP-----NVEMISLDIMDS 63
Query: 70 DLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIH 129
V ++ D I H AA++ V +S+ N N++GT +L+A + + R +
Sbjct: 64 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 123
Query: 130 VSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 187
+ + E YG +E V E +QL P +PY +KA ML Y ++YG+ +I TR
Sbjct: 124 IGSSEEYGMILPEESPV---SEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 188 NVYGPNQ----FPEKLIPKFILLAM-RGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
N GP Q + + + + M + P+ G+ VR + D+ +A+ + G
Sbjct: 181 NHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG 240
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
+ G VYNV + R+ DV + + ++ +T + ++ RP +++L S G
Sbjct: 241 KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTG 300
Query: 302 WSERTIWEEGLRKTIEWYTQ 321
W R E+ L + ++ Y Q
Sbjct: 301 WKPRIPLEKSLFEILQSYRQ 320
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 427 VQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHGILMMNYATGC 486
+ +KP ++F+ A + + W +K T TNV GTL + D RD + G
Sbjct: 70 ISDIKPDYIFHLAAKSSVKD-SWL--NKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS 126
Query: 487 IFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEY 529
EY PE S + + + P S Y +KA V L ++Y
Sbjct: 127 SEEYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQY 166
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 37/340 (10%)
Query: 4 YTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSN 58
++PK LITG AGFI S++ +L++ ++ LD +K L+ ++ S
Sbjct: 36 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 93
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
F F++GDI DL + + +D ++H AA V S + NI G +L A
Sbjct: 94 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 151
Query: 119 KVTGQIRRFIHVSTDEVYGETDEDAV------VGNHEASQLLPTNPYSATKAGAEMLVMA 172
K Q++ F + ++ YG D A+ +GN P +PY+ TK E+
Sbjct: 152 K-NAQVQSFTYAASSSTYG--DHPALPKVEENIGN-------PLSPYAVTKYVNEIYAQV 201
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPE----KLIPKFILLAMRGLPLPIHGDGSNVRSYLYC 228
Y R+YG I R NV+G Q P +IPK+ ++G + I+GDG R + Y
Sbjct: 202 YARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYI 261
Query: 229 EDVAEA--FECILHKGEVGHVYNVGTKKERRVIDVAK---DICKLFSMDPETSIKFVENR 283
++V + + ++YNV + +++ D L + SIK+ E R
Sbjct: 262 DNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 321
Query: 284 PFNDQRYFLDD--QKLTSLGWSERTIWEEGLRKTIEWYTQ 321
D R+ D + + L + EGLR ++ WY +
Sbjct: 322 S-GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 360
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 37/340 (10%)
Query: 4 YTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSN 58
++PK LITG AGFI S++ +L++ ++ LD +K L+ ++ S
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
F F++GDI DL + + +D ++H AA V S + NI G +L A
Sbjct: 81 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 119 KVTGQIRRFIHVSTDEVYGETDEDAV------VGNHEASQLLPTNPYSATKAGAEMLVMA 172
K Q++ F + ++ YG D A+ +GN P +PY+ TK E+
Sbjct: 139 K-NAQVQSFTYAASSSTYG--DHPALPKVEENIGN-------PLSPYAVTKYVNEIYAQV 188
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPE----KLIPKFILLAMRGLPLPIHGDGSNVRSYLYC 228
Y R+YG I R NV+G Q P +IPK+ ++G + I+GDG R + Y
Sbjct: 189 YARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYI 248
Query: 229 EDVAEA--FECILHKGEVGHVYNVGTKKERRVIDVAK---DICKLFSMDPETSIKFVENR 283
++V + + ++YNV + +++ D L + SIK+ E R
Sbjct: 249 DNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 308
Query: 284 PFNDQRYFLDD--QKLTSLGWSERTIWEEGLRKTIEWYTQ 321
D R+ D + + L + EGLR ++ WY +
Sbjct: 309 S-GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 152/340 (44%), Gaps = 37/340 (10%)
Query: 4 YTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSN 58
++PK LITG AGFI S++ +L++ ++ LD +K L+ ++ S
Sbjct: 17 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 74
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
F F++GDI DL + + +D ++H AA V S + NI G +L A
Sbjct: 75 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 132
Query: 119 KVTGQIRRFIHVSTDEVYGETDEDAV------VGNHEASQLLPTNPYSATKAGAEMLVMA 172
K Q++ F + ++ YG D A+ +GN P +PY+ TK E+
Sbjct: 133 K-NAQVQSFTYAASSSTYG--DHPALPKVEENIGN-------PLSPYAVTKYVNEIYAQV 182
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPE----KLIPKFILLAMRGLPLPIHGDGSNVRSYLYC 228
Y R+YG I R NV+G Q P +IPK+ ++G + I+GDG R + Y
Sbjct: 183 YARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYI 242
Query: 229 EDVAEA--FECILHKGEVGHVYNVGTKKERRVIDVAK---DICKLFSMDPETSIKFVENR 283
++V + + ++YNV + +++ D L + SIK+ E R
Sbjct: 243 DNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 302
Query: 284 PFNDQRYFLDD--QKLTSLGWSERTIWEEGLRKTIEWYTQ 321
D R+ D + + L + EGLR ++ WY +
Sbjct: 303 S-GDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 341
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 149/346 (43%), Gaps = 47/346 (13%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+ILI G AG+I SH +L+ +VV+D NL+ + KF GD+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDE--GLSVVVVD------NLQTGHEDAITEGAKFYNGDLR 54
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
+ + E+I+ +MHFAA + V S ++ NN+YG LLE ++ +F
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMD-EFKVDKF 113
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP------- 180
I ST YGE D D + E + PTN Y TK E ++ Y ++ L
Sbjct: 114 IFSSTAATYGEVDVDLIT---EETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 181 -VITTRGNNVYGPNQFPE-KLIPKFILLAM-RGLPLPIHG------DGSNVRSYLYCED- 230
V N + G + PE LIP + +A+ + + + G DG+ +R Y++ ED
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 231 VAEAFECI--LHKGEVGHVYNVGTKKE---RRVIDVAKDICKLFSMDPETSIKFVENRPF 285
VA F + L G YN+G + ++D +++ + E + R
Sbjct: 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVT-----NHEIPAEVAPRRAG 285
Query: 286 NDQRYFLDDQKLTS-LGWSERTIWEEGLRKTIE----WYTQNPDWW 326
+ R QK LGW R + ++ IE W+ + P+ +
Sbjct: 286 DPARLVASSQKAKEKLGWDPRYV---NVKTIIEHAWNWHQKQPNGY 328
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 151/340 (44%), Gaps = 37/340 (10%)
Query: 4 YTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSN 58
++PK LITG AGFI S++ +L++ ++ LD +K L+ ++ S
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
F F++GDI DL + + +D ++H AA V S + NI G +L A
Sbjct: 81 FCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAA 138
Query: 119 KVTGQIRRFIHVSTDEVYGETDEDAV------VGNHEASQLLPTNPYSATKAGAEMLVMA 172
K Q++ F + ++ YG D A+ +GN P +PY+ TK E+
Sbjct: 139 K-NAQVQSFTYAASSSTYG--DHPALPKVEENIGN-------PLSPYAVTKYVNEIYAQV 188
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPE----KLIPKFILLAMRGLPLPIHGDGSNVRSYLYC 228
Y R+YG I R NV+G Q P +IPK+ ++G + I+GDG R + Y
Sbjct: 189 YARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYI 248
Query: 229 EDVAEA--FECILHKGEVGHVYNVGTKKERRVIDVAK---DICKLFSMDPETSIKFVENR 283
++V + + ++YNV + +++ D L + SIK+ E R
Sbjct: 249 DNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 308
Query: 284 PFNDQRYFLDD--QKLTSLGWSERTIWEEGLRKTIEWYTQ 321
D R D + + L + EGLR ++ WY +
Sbjct: 309 S-GDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYVR 347
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 17/238 (7%)
Query: 6 PKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL--DYCSNL---KNLIPSKASSNFK 60
PK LITG AGFI S++ L++ + K+V LD + NL ++L+ K SNFK
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLK--LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 84
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
F++GDI + D N +D ++H AA V S + NI G +L A +
Sbjct: 85 FIQGDIRNLDDCNN--ACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR- 141
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+++ F + ++ YG+ V E + P +PY+ TK E+ + R YG
Sbjct: 142 DAKVQSFTYAASSSTYGDHPGLPKV---EDTIGKPLSPYAVTKYVNELYADVFSRCYGFS 198
Query: 181 VITTRGNNVYGPNQFPE----KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEA 234
I R NV+G Q P +IPK+ ++G + I+GDG R + Y E+ +A
Sbjct: 199 TIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQA 256
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 21/260 (8%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKAS--SNFKFVKG 64
+ ILITG AGF+ S++ N+P+ K+VVLDK + N PS N KG
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG 70
Query: 65 DIASADLVNFL----LITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
++ +AD+ N L L D + H AA + D + N K N LLE +
Sbjct: 71 EVIAADINNPLDLRRLEKLHFDYLFHQAAVS--DTTMLNQELVMKTNYQAFLNLLEIAR- 127
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+ + I+ S+ VYG T VVG +E+ P N Y +K + V+++ S
Sbjct: 128 -SKKAKVIYASSAGVYGNTKAPNVVGKNES----PENVYGFSKLCMDEFVLSH--SNDNV 180
Query: 181 VITTRGNNVYGPNQFPEK----LIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFE 236
+ R NVYGP +F ++ ++ + L AM + + G +R ++Y EDV +A
Sbjct: 181 QVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA-N 239
Query: 237 CILHKGEVGHVYNVGTKKER 256
K + VYNVG + R
Sbjct: 240 VKAMKAQKSGVYNVGYSQAR 259
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 143/353 (40%), Gaps = 44/353 (12%)
Query: 5 TPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-----DYCSNLKNLIPSKASSNF 59
T K +L+TG AG+I SH LI N Y VV D L D + L+ L +
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIEN--GYDCVVADNLSNSTYDSVARLEVL----TKHHI 63
Query: 60 KFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
F + D+ + + ID+++HFA V S + NNI GT VLLE +
Sbjct: 64 PFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQ 123
Query: 120 VTGQIRRFIHVSTDEVYGE-TDEDAVVGNHEASQLLPTNPYSATKAGAEM----LVMAYG 174
+ +F+ S+ VYG+ T ++ E L PTNPY TK E L +
Sbjct: 124 QY-NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDK 182
Query: 175 RSYGLPV------ITTRGNNVYG--PNQFPEKLIPKFILLAM-RGLPLPIHG------DG 219
+S+ + I + + G P P L+P +A+ R L I G DG
Sbjct: 183 KSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDG 242
Query: 220 SNVRSYLYCEDVAEAFECILHKGE-------VGHVYNVGTKKERRVIDVAKDICKLFSMD 272
+ +R Y++ D+A+ L E + +N+G+ K V +V CK +D
Sbjct: 243 TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID 302
Query: 273 PETSIKFVENRPFNDQRYFLD--DQKLTSLGWSERTIWEEGLRKTIEWYTQNP 323
V R D D+ L W E+ + +W T+NP
Sbjct: 303 LPYK---VTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENP 352
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 112/261 (42%), Gaps = 22/261 (8%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I +TG GF+ +V I+N I+ L I +KA +++++ D
Sbjct: 5 IAVTGGTGFLGQYVVES-IKNDGNTPII----------LTRSIGNKAINDYEYRVSDYTL 53
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
DL+N L +D ++H AA S G EF N I T L +AC I +
Sbjct: 54 EDLINQL---NDVDAVVHLAATR---GSQGKISEFHDNEIL-TQNLYDAC-YENNISNIV 105
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
+ ST Y +DE ++ N E LP Y +K E + Y R GL + R +
Sbjct: 106 YASTISAY--SDETSLPWN-EKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAH 162
Query: 189 VYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY 248
+YG N+ I +F A G L +H + R +LY +D A++ L + +V +
Sbjct: 163 LYGFNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTF 222
Query: 249 NVGTKKERRVIDVAKDICKLF 269
N+G+ +VA I F
Sbjct: 223 NIGSGDALTNYEVANTINNAF 243
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 67/320 (20%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-------DYCSNLKNLI---------- 51
+L+ G AG+I SH L+R+ + +V++D L D+ +N+
Sbjct: 5 VLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 52 PSKASSNFKFVKGDIASADLVNFLLITES-IDTIMHFAAQTHVDNSFGNSFEFTKNNIYG 110
P A GD+ + D +N + ID ++H A V S + ++ NN+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 111 THVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEA----SQLLPTNPYSATKAGA 166
LL+A + + + I S+ ++G +V N E ++ P +PY +K A
Sbjct: 124 ILRLLQA-MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIA 182
Query: 167 EMLVMAYGRSYGLPVITTRGNNVYGPN---------QFPEKLIPKFILLAMRGLP----- 212
E ++ +YG+ I R N G + Q LIP + M +
Sbjct: 183 ERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 213 -----------LPIHG------DGSNVRSYLYCEDVAEAFECIL---------HKGEVGH 246
+PI G DG+ VR Y++ D+A A L K +
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 247 VYNVGTKKE---RRVIDVAK 263
V+N+GT + R VI+VA+
Sbjct: 303 VFNLGTSRGYSVREVIEVAR 322
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEK------LIPKF 203
L PTN PY+ K L +Y R YG + N+YGP N P L+ +F
Sbjct: 129 LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 204 ILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
+ P + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQNAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + D+A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRDLAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPE--KLIPKFI--- 204
L PTN PY+ K L +Y R YG + N+YGP N P +IP +
Sbjct: 129 LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 205 --LLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
A + + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + ++A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPE------KLIPKF 203
L PTN PY+ K L +Y R YG + N+YGP N P L+ +F
Sbjct: 129 LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 204 ILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
+ P + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQSAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + ++A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEK------LIPKF 203
L PTN PY+ K L +Y R YG + N+YGP N P L+ +F
Sbjct: 129 LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 204 ILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
+ P + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQNAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + ++A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPE------KLIPKF 203
L PTN PY+ + L +Y R YG + N+YGP N P L+ +F
Sbjct: 129 LEPTNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 204 ILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
+ P + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQSAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + ++A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 132/325 (40%), Gaps = 34/325 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I ITGA GFIASH+ RL ++ Y I D+ N +++ F V +
Sbjct: 32 ISITGAGGFIASHIARRL-KHEGHYVIAS----DWKKN-EHMTEDMFCDEFHLVDLRV-- 83
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKVTGQI 124
+ N L +TE +D + + AA G N NN + ++EA ++ G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 125 RRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+RF + S+ +Y E + + + +A P + Y K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIE 197
Query: 181 VITTRGNNVYGP----NQFPEKLIPKFILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAF 235
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 236 ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD-PETSIKFVEN-RPFNDQRYFLD 293
L K + N+G+ + + ++A+ + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 294 DQKLTSLGWSERTIWEEGLRKTIEW 318
++ LGW+ +EGLR T W
Sbjct: 317 EK----LGWAPNMRLKEGLRITYFW 337
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 417 LEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHG 476
+E+C + V HVFN A G + + +S+ + + N + + + R +G
Sbjct: 84 MENCLKVTEGVD-----HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 477 ILMMNYATGCIFEYDAAHPEGSGIGYKEEDT-PNFTGSFYSKTKAMVEELLKEYDNVCTL 535
I YA+ + E + + KE D P Y K EEL K Y+ +
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 536 RVRMPISSDLNNP----------------RNFITKISRYNKVVN--IPNSMTVLDELLPI 577
R+ ++ P R T R+ + S T +DE +
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 256
Query: 578 SIEMAKRNLRGIWNFTNPGVVSHNEILEM 606
+ + K + R N + +VS NE+ EM
Sbjct: 257 VLRLTKSDFREPVNIGSDEMVSMNEMAEM 285
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 34/325 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I ITGA GFIASH+ RL ++ Y I D+ N +++ F V +
Sbjct: 32 ISITGAGGFIASHIARRL-KHEGHYVIAS----DWKKN-EHMTEDMFCDEFHLVDLRV-- 83
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKVTGQI 124
+ N L +TE +D + + AA G N NN + ++EA ++ G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 125 RRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+RF + S+ +Y E + + + +A P + Y + E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIE 197
Query: 181 VITTRGNNVYGP----NQFPEKLIPKFILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAF 235
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 236 ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD-PETSIKFVEN-RPFNDQRYFLD 293
L K + N+G+ + + ++A+ + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 294 DQKLTSLGWSERTIWEEGLRKTIEW 318
++ LGW+ +EGLR T W
Sbjct: 317 EK----LGWAPNMRLKEGLRITYFW 337
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 417 LEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHG 476
+E+C + V HVFN A G + + +S+ + + N + + + R +G
Sbjct: 84 MENCLKVTEGVD-----HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 477 ILMMNYATGCIFEYDAAHPEGSGIGYKEEDT-PNFTGSFYSKTKAMVEELLKEYDNVCTL 535
I YA+ + E + + KE D P Y + EEL K Y+ +
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGI 196
Query: 536 RVRMPISSDLNNP----------------RNFITKISRYNKVVN--IPNSMTVLDELLPI 577
R+ ++ P R T R+ + S T +DE +
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 256
Query: 578 SIEMAKRNLRGIWNFTNPGVVSHNEILEM 606
+ + K + R N + +VS NE+ EM
Sbjct: 257 VLRLTKSDFREPVNIGSDEMVSMNEMAEM 285
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 134/350 (38%), Gaps = 36/350 (10%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSK-------ASSNF 59
+ +L+TG AG+I SH L+ Y VV+D +P +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 60 KFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
+F + DI + L S ++HFA V S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS-YG 178
G ++ + S+ VYG + H TNPY +K E ++ ++
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 179 LPVITTRGNNVYG----------PNQFPEKLIPKFILLAM-RGLPLPIHG------DGSN 221
V+ R N G P P L+P +A+ R L + G DG+
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 222 VRSYLYCEDVAEAFECILH--KGEVG-HVYNVGTKKERRVIDVAKDICKLFSMDPETSIK 278
VR Y++ D+A+ L K + G +YN+GT V+ + + + K + + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 279 FVENRPFNDQRYFLDDQ-KLTSLGWSERTIWEEGLRKTIEWYTQNPDWWG 327
V R + + + LGW+ + W QNP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 456 DTIRTNVAGTLTLADVCRDHGILMMNYATGCI-------FEYDAAHPEGSGIGYKEEDTP 508
D R N+ GT+ L ++ + HG+ + +++ D AHP G
Sbjct: 103 DYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGG---------- 152
Query: 509 NFTGSFYSKTKAMVEELLKE 528
+ Y K+K +EE++++
Sbjct: 153 --CTNPYGKSKFFIEEMIRD 170
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 133/350 (38%), Gaps = 36/350 (10%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSK-------ASSNF 59
+ +L+TG AG+I SH L+ Y VV+D +P +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 60 KFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
+F + DI + L S ++HFA V S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR---- 175
G ++ + S+ VYG + H TNPY +K E ++ +
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 176 --SYGLPVITTRGNNVYG-----PNQFPEKLIPKFILLAM-RGLPLPIHG------DGSN 221
+ L G + G P P L+P +A+ R L + G DG+
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 222 VRSYLYCEDVAEAFECILH--KGEVG-HVYNVGTKKERRVIDVAKDICKLFSMDPETSIK 278
VR Y++ D+A+ L K + G +YN+GT V+ + + + K + + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 279 FVENRPFNDQRYFLDDQ-KLTSLGWSERTIWEEGLRKTIEWYTQNPDWWG 327
V R + + + LGW+ + W QNP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 456 DTIRTNVAGTLTLADVCRDHGILMMNYATGCI-------FEYDAAHPEGSGIGYKEEDTP 508
D R N+ GT+ L ++ + HG+ + +++ D AHP G
Sbjct: 103 DYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGG---------- 152
Query: 509 NFTGSFYSKTKAMVEELLKE 528
+ Y K+K +EE++++
Sbjct: 153 --CTNPYGKSKFFIEEMIRD 170
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 33/338 (9%)
Query: 4 YTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLD-----KLDYCSNLKNLIPSKASSN 58
+ K + +TG GF S + L K LD L L +L+ S
Sbjct: 7 WQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHI--- 63
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC 118
GDI + + + + + H AAQ V S+ + N+ GT LLE
Sbjct: 64 -----GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETV 118
Query: 119 KVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY- 177
K G I+ +++++D+ Y + + V G E + +PYS +K AE++ A+ S+
Sbjct: 119 KQVGNIKAVVNITSDKCY--DNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFF 176
Query: 178 --------GLPVITTRGNNVYGPNQFP-EKLIPKFILLAMRGLPLPIHGDGSNVRSYLYC 228
G+ + + R NV G + ++LIP IL + I + ++R + +
Sbjct: 177 NPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPD-ILRSFENNQQVIIRNPYSIRPWQHV 235
Query: 229 EDVAEAFECILHK-----GEVGHVYNVGTKKE-RRVIDVAKDICKLFSMDPETSIKFVEN 282
+ + + + + +N G + E + ++ D D + + EN
Sbjct: 236 LEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMVTLWGDDASWLLDGEN 295
Query: 283 RPFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWY 319
P LD K LGW R E L + ++W+
Sbjct: 296 HPHEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWH 333
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 34/325 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I ITGA GFIASH+ RL ++ Y I D+ N +++ F V +
Sbjct: 32 ISITGAGGFIASHIARRL-KHEGHYVIAS----DWKKN-EHMTEDMFCDEFHLVDLRV-- 83
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKVTGQI 124
+ N L +TE +D + + AA G N NN + ++EA ++ G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 125 RRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+RF + S+ +Y E + + + +A P + + K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 181 VITTRGNNVYGP----NQFPEKLIPKFILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAF 235
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 236 ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD-PETSIKFVEN-RPFNDQRYFLD 293
L K + N+G+ + + ++A+ + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 294 DQKLTSLGWSERTIWEEGLRKTIEW 318
++ LGW+ +EGLR T W
Sbjct: 317 EK----LGWAPNMRLKEGLRITYFW 337
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 417 LEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHG 476
+E+C + V HVFN A G + + +S+ + + N + + + R +G
Sbjct: 84 MENCLKVTEGVD-----HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 477 ILMMNYATGCIFEYDAAHPEGSGIGYKEEDT-PNFTGSFYSKTKAMVEELLKEYDNVCTL 535
I YA+ + E + + KE D P + K EEL K Y+ +
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGI 196
Query: 536 RVRMPISSDLNNP----------------RNFITKISRYNKVVN--IPNSMTVLDELLPI 577
R+ ++ P R T R+ + S T +DE +
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 256
Query: 578 SIEMAKRNLRGIWNFTNPGVVSHNEILEM 606
+ + K + R N + +VS NE+ EM
Sbjct: 257 VLRLTKSDFREPVNIGSDEMVSMNEMAEM 285
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 153 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPE------KLIPKF 203
L PTN P + K L +Y R YG + N+YGP N P L+ +F
Sbjct: 129 LEPTNEPEAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 204 ILLAMRGLP-LPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY------------NV 250
+ P + + G G+ +R +L+ +D+A A +H E+ H NV
Sbjct: 189 HEATAQSAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 251 GTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEE 310
GT + + ++A+ I K+ + + F ++P R LD +L LGW E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGY--KGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 311 GLRKTIEWYTQNPD 324
GL T +W+ +N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 134/350 (38%), Gaps = 36/350 (10%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSK-------ASSNF 59
+ +L+TG AG+I SH L+ Y VV+D +P +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLE--AGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 60 KFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
+F + DI + L S ++HFA + S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS-YG 178
G ++ + S+ VYG + H TNPY +K E ++ ++
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 179 LPVITTRGNNVYG----------PNQFPEKLIPKFILLAM-RGLPLPIHG------DGSN 221
V+ R N G P P L+P +A+ R L + G DG+
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 222 VRSYLYCEDVAEAFECILH--KGEVG-HVYNVGTKKERRVIDVAKDICKLFSMDPETSIK 278
VR Y++ D+A+ L K + G +YN+GT V+ + + + K + + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 279 FVENRPFNDQRYFLDDQ-KLTSLGWSERTIWEEGLRKTIEWYTQNPDWWG 327
V R + + + LGW+ + W QNP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 456 DTIRTNVAGTLTLADVCRDHGILMMNYATGCI-------FEYDAAHPEGSGIGYKEEDTP 508
D R N+ GT+ L ++ + HG+ + +++ D AHP G
Sbjct: 103 DYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGG---------- 152
Query: 509 NFTGSFYSKTKAMVEELLKE 528
+ Y K+K +EE++++
Sbjct: 153 --CTNPYGKSKFFIEEMIRD 170
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 40/328 (12%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I ITGA GFIASH+ RL ++ Y I D+ N +++ F V +
Sbjct: 32 ISITGAGGFIASHIARRL-KHEGHYVIAS----DWKKN-EHMTEDMFCDEFHLVDLRV-- 83
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKVTGQI 124
+ N L +TE +D + + AA G N NN + ++EA ++ G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 125 RRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+RF + S+ +Y E + + + +A P + Y K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIE 197
Query: 181 VITTRGNNVYGP--------NQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVA 232
R +N+YGP P K R + GDG RS+ + ++
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDR---FEMWGDGLQTRSFTFIDECV 254
Query: 233 EAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD-PETSIKFVEN-RPFNDQRY 290
E L K + N+G+ + + ++A+ + P I E R N
Sbjct: 255 EGV-LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNN 313
Query: 291 FLDDQKLTSLGWSERTIWEEGLRKTIEW 318
+ ++ LGW+ +EGLR T W
Sbjct: 314 LIKEK----LGWAPNMRLKEGLRITYFW 337
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 417 LEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHG 476
+E+C + V HVFN A G + + +S+ + + N + + + R +G
Sbjct: 84 MENCLKVTEGVD-----HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 477 ILMMNYATGCIFEYDAAHPEGSGIGYKEEDT-PNFTGSFYSKTKAMVEELLKEYDNVCTL 535
I YA+ + E + + KE D P Y K EEL K Y+ +
Sbjct: 137 IKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGI 196
Query: 536 RVRMPISSDLNNP----------------RNFITKISRYNKVVN--IPNSMTVLDELLPI 577
R+ ++ P R T R+ + S T +DE +
Sbjct: 197 ECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEG 256
Query: 578 SIEMAKRNLRGIWNFTNPGVVSHNEILEM 606
+ + K + R N + +VS NE+ EM
Sbjct: 257 VLRLTKSDFREPVNIGSDEMVSMNEMAEM 285
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 132/344 (38%), Gaps = 35/344 (10%)
Query: 5 TPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-DYCSNLKNLIPSKASSNFKFVK 63
T IL+TG AG+I SH L+ + Y +V+ D L + I F +
Sbjct: 4 TKGTILVTGGAGYIGSHTAVELLAH--GYDVVIADNLVNSKREAIARIEKITGKTPAFHE 61
Query: 64 GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
D++ + + I +HFAA V S E+ +NN+ LL +
Sbjct: 62 TDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA- 120
Query: 124 IRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEML---VMAYGRSYGLP 180
++R + S+ VYG + + E L TNPY TK AE + V A S+
Sbjct: 121 VKRIVFSSSATVYGVPERSPI---DETFPLSATNPYGQTKLMAEQILRDVEAADPSW--R 175
Query: 181 VITTRGNNVYG----------PNQFPEKLIPKFILLAMRGL-PLPIHG------DGSNVR 223
V T R N G P P L+P +A+ L L + G DG+ VR
Sbjct: 176 VATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVR 235
Query: 224 SYLYCEDVAE---AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFV 280
Y++ D+A A L + + N+GT + V++V + K + + V
Sbjct: 236 DYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEK--ASGRAVPYELV 293
Query: 281 ENRPFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNP 323
RP + + + ++GW E W NP
Sbjct: 294 ARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNP 337
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 82 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDE 141
+ + H AAQ V S+ E N+ GT LLEA + G ++ +++++D+ Y ++
Sbjct: 82 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCY--DNK 139
Query: 142 DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY---------GLPVITTRGNNVYGP 192
+ + G E + +PYS +K AE++ +Y S+ G V T R NV G
Sbjct: 140 EWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG 199
Query: 193 NQFP-EKLIPKFILLAMRGLPLPI 215
+ ++++P + + P+ I
Sbjct: 200 GDWALDRIVPDILRAFEQSQPVII 223
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 415 GRLEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRD 474
G + D + L+ ++ +P VF+ A +P V S +T TNV GT+ L + R
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAA---QPLVRLSYSEPVETYSTNVMGTVYLLEAIRH 120
Query: 475 HG 476
G
Sbjct: 121 VG 122
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLI---PSKASSNFKFVK 63
K LITG G S++ L+ E + + + + I P + F
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 64 GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEACKVTG 122
GD++ + +L D + + A +HV SF S E+T + + GT LLEA + G
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSF-ESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 123 --QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
+ RF ST E+YG E + E + P +PY+ K A + + Y SYG+
Sbjct: 121 LEKKTRFYQASTSELYGLVQE---IPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGM 176
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 3 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 55
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 56 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 106
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 107 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 166
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 167 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226
Query: 230 DVAEAFECILHKGE---VGHVYNVG 251
D EA I+ G + N+G
Sbjct: 227 DGIEALYRIIENAGNRCDGEIINIG 251
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG++G I + + L Y + ++ D I + + KF+ D+++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASD-----------IVQRDTGGIKFITLDVSN 50
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
D ++ + SID I H A + + K N+ GT+ +LEA K ++ + +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 129 HVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
ST V+G ET ++ V + P Y TK AE+L Y +GL V + R
Sbjct: 109 IPSTIGVFGPETPKNKV---PSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 230 DVAEAFECILHKGE---VGHVYNVG 251
D EA I+ G + N+G
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIG 264
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 230 DVAEAFECILHKGE---VGHVYNVG 251
D EA I+ G + N+G
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIG 264
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 108/274 (39%), Gaps = 38/274 (13%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 230 DVAEAFECILHKGE---VGHVYNVGTKKERRVID 260
D EA I+ G + N+G + I+
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIE 273
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 230 DVAEAFECILHKGE---VGHVYNVG 251
D EA I+ G + N+G
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIG 264
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 22/274 (8%)
Query: 10 LITGAAGFIASHVCNRLI-RNYPEYKIVVLDKLDYCSNLKNLIPSKAS---SNFKFVKGD 65
LITG G S++ L+ + Y + IV +++L + + N K GD
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEACKVTGQI 124
+ + + ++ I + AQ+HV SF + E+T + + GT LL+A K G I
Sbjct: 88 LTDSTCLVKIINEVKPTEIYNLGAQSHVKISF-DLAEYTADVDGVGTLRLLDAVKTCGLI 146
Query: 125 R--RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL--- 179
+F ST E+YG+ E + E + P +PY A K A +V+ + +Y L
Sbjct: 147 NSVKFYQASTSELYGKVQE---IPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAV 203
Query: 180 -PVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECI 238
++ + G N K+ + + L G+ R + + +D EA +
Sbjct: 204 NGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLM 263
Query: 239 LHKGE-------VGHVYNVGTKKERRVIDVAKDI 265
L E G V++V E+ + + K I
Sbjct: 264 LQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTI 297
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 415 GRLEDCSSLIADVQSVKPTHVFNAAGVTG-RPNVDWCESHKTDTIRTNVAGTLTLADVCR 473
G L D + L+ + VKPT ++N + + + D E T + GTL L D +
Sbjct: 86 GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEY----TADVDGVGTLRLLDAVK 141
Query: 474 DHGILMMNYATGCIFEYDAAHPEGSGIGY---KEEDTPNFTGSFYSKTKAMVEELLKEYD 530
G++ + Y A+ E G ++E TP + S Y K ++ +
Sbjct: 142 TCGLI------NSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFR 195
Query: 531 NVCTLRVRMPISSDLNNPR---NFIT-KISR 557
L I + +PR NF+T KISR
Sbjct: 196 EAYNLFAVNGILFNHESPRRGANFVTRKISR 226
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA----CKVTG 122
++ + + + + D ++ A E+T+N + + E +
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 123 QIR-RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 177
+ R R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
GL R N GP + I + IL + G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 230 DVAEAFECILHKGE---VGHVYNVG 251
D EA I+ G + N+G
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIG 264
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 138/355 (38%), Gaps = 57/355 (16%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLD-KLDYCSNLKNLIPSKASSNFKFVKGDIA 67
+LI G GFI +H+ RL+R Y++ LD D S N +F FV+GDI+
Sbjct: 318 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 370
Query: 68 -SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHV-------LLEACK 119
++ + + + + D ++ A E+T+N + + ++ C
Sbjct: 371 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYC- 420
Query: 120 VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGR 175
+R I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 421 -VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGE 479
Query: 176 SYGLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLY 227
GL R N GP + I + IL + G P+ + G R +
Sbjct: 480 KEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539
Query: 228 CEDVAEAFECILHKGE---VGHVYNVGT-KKERRVIDVAKDICKLFS-------MDPETS 276
D EA I+ G + N+G + E + ++ + + F P
Sbjct: 540 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAG 599
Query: 277 IKFVENRPFNDQRYFLDDQKLTS-------LGWSERTIWEEGLRKTIEWYTQNPD 324
+ VE+ + + Y + + S L W + +E + +T++++ + D
Sbjct: 600 FRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 29/320 (9%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K + ITG G I SH+ L+ K+V +D ++ + + + K N FV+G I
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGD--KVVGID--NFATGRREHL--KDHPNLTFVEGSI 75
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
A LVN L+ D ++H AA + + N T N G +++A K + R
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYND---TLTNCVGGSNVVQAAK-KNNVGR 131
Query: 127 FIHVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
F++ T YG + + V +H P NP +++ A ++ Y GL +T R
Sbjct: 132 FVYFQTALCYGVKPIQQPVRLDH------PRNPANSSYAISKSANEDYLEYSGLDFVTFR 185
Query: 186 GNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVG 245
NV GP L P F G + R +++ +D+A A + VG
Sbjct: 186 LANVVGPRNVSGPL-PIFFQRLSEGKKCFVT---KARRDFVFVKDLARA--TVRAVDGVG 239
Query: 246 H-VYNVGTKKERRVIDVAKDICKLFSMD--PETSIKFVENRPFNDQRYFLDDQK-LTSLG 301
H Y+ + + + ++ + + ++ PE I+ E P + LD + + G
Sbjct: 240 HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--ELGPDDAPSILLDPSRTIQDFG 297
Query: 302 WSERTIWEEGLRKTIEWYTQ 321
E T +E + + ++ +
Sbjct: 298 KIEFTPLKETVAAAVAYFRE 317
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG++G I + + L Y + ++ D I + + KF+ D+++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASD-----------IVQRDTGGIKFITLDVSN 50
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
D ++ + SID I H A + + K N+ GT+ +LEA K ++ + +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 129 HVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
ST V+G ET ++ V + P + TK AE+L Y +GL V + R
Sbjct: 109 IPSTIGVFGPETPKNKV---PSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 142/350 (40%), Gaps = 54/350 (15%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +LI G GFI H+ R++ ++++ +D L +L+ + F +GDI
Sbjct: 25 KKVLILGVNGFIGHHLSKRILET-TDWEVFGMDM--QTDRLGDLVKHE---RMHFFEGDI 78
Query: 67 A-SADLVNFLLITESIDTIMHFAA----QTHVDNSFGNSFE--FTKNNIYGTHVLLEACK 119
+ + V + + + D I+ A T+V FE F N ++ A K
Sbjct: 79 TINKEWVEYHV--KKCDVILPLVAIATPATYVKQPL-RVFELDFEAN----LPIVRSAVK 131
Query: 120 VTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGR 175
+ + ST EVYG ++ + A P N Y+ +K + ++ YG
Sbjct: 132 YG---KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGM 188
Query: 176 SYGLPVITTRGNN--------VYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLY 227
GL R N +Y P + +++ +F+ +RG + + GS R++ Y
Sbjct: 189 E-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTY 247
Query: 228 CEDVAEAFECILHKGE---VGHVYNVGTKKER-RVIDVAKDICKLFSMDPETS-----IK 278
+D A I+ G +YN+G V ++A + +L + PE + +K
Sbjct: 248 VDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVK 307
Query: 279 FVENRP-------FND--QRYFLDDQKLTSLGWSERTIWEEGLRKTIEWY 319
VE + D R + + LGW+ + +++ LR+ E Y
Sbjct: 308 LVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAY 357
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--------YCSNLKNLIPSKAS--- 56
N L+TGA GF+ +++ L + Y ++I + D +NL + +
Sbjct: 152 NTLLTGATGFLGAYLIEAL-QGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMM 209
Query: 57 -SNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLL 115
SN + + GD D V ++ E++DTI+H A+T + FG+ EF K N+ GT +
Sbjct: 210 LSNIEVIVGDFECMDDV---VLPENMDTIIHAGART---DHFGDDDEFEKVNVQGT---V 260
Query: 116 EACKVTGQIR-RFIHVSTDEV--YGETD-EDAVVGNHEA--SQLLPTNPYSATKAGAEML 169
+ ++ Q R I+VST V Y + D ED + QLL T+PY+ +K +E+
Sbjct: 261 DVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL-TSPYTRSKFYSELK 319
Query: 170 VM 171
V+
Sbjct: 320 VL 321
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 30/182 (16%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD--------YCSNLKNLIPSKAS--- 56
N L+TGA GF+ +++ L + Y ++I + D +NL + +
Sbjct: 71 NTLLTGATGFLGAYLIEAL-QGYS-HRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXX 128
Query: 57 -SNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLL 115
SN + + GD D V ++ E+ DTI+H A+T + FG+ EF K N+ GT +
Sbjct: 129 LSNIEVIVGDFECXDDV---VLPENXDTIIHAGART---DHFGDDDEFEKVNVQGT---V 179
Query: 116 EACKVTGQIR-RFIHVSTDEV--YGETD-EDAVVGNHEA--SQLLPTNPYSATKAGAEML 169
+ ++ Q R I+VST V Y + D ED + QLL T+PY+ +K +E+
Sbjct: 180 DVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL-TSPYTRSKFYSELK 238
Query: 170 VM 171
V+
Sbjct: 239 VL 240
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 7/174 (4%)
Query: 7 KNILITGAAGFIASHVCNRLI-RNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGD 65
++ L+TG G +++ L+ + Y + +V D L+ L + ++ GD
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL---GIEGDIQYEDGD 71
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
+A A V +I + + AAQ+ V S+ + G LLEA +
Sbjct: 72 MADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET 131
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
RF ST E++G + E + P +PY K + + Y S+GL
Sbjct: 132 RFYQASTSEMFGLIQAER---QDENTPFYPRSPYGVAKLYGHWITVNYRESFGL 182
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 32/171 (18%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNF-----KF 61
+ ILITG G +++ KI+V + L S+ + F +F
Sbjct: 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR-------DELKQSEMAMEFNDPRMRF 74
Query: 62 VKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
GD+ + +N+ L E +D +H AA HV + N E K NI G ++ AC +
Sbjct: 75 FIGDVRDLERLNYAL--EGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC-LK 131
Query: 122 GQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMA 172
I + I +STD+ P N Y ATK ++ L ++
Sbjct: 132 NAISQVIALSTDKAAN-----------------PINLYGATKLCSDKLFVS 165
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 32/194 (16%)
Query: 9 ILITGAAGFIASHV----------CNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSN 58
+ +TG GF+ S + N IR PE K + + +NL AS
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERK----RDVSFLTNLPG-----ASEK 54
Query: 59 FKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEF-TKNNIYGTHVLLEA 117
F D+++ D +F E I H A+ +D + E TK + G +L+A
Sbjct: 55 LHFFNADLSNPD--SFAAAIEGCVGIFHTASP--IDFAVSEPEEIVTKRTVDGALGILKA 110
Query: 118 CKVTGQIRRFIHVSTDEVYGETDEDAVVGNH----EASQLLPTNP----YSATKAGAEML 169
C + ++RFI+ S+ +D V + + L P Y+ +K AE
Sbjct: 111 CVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKA 170
Query: 170 VMAYGRSYGLPVIT 183
V+ +G G+ V+T
Sbjct: 171 VLEFGEQNGIDVVT 184
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +L+TGAAG + + RL P +I+ L ++L L P A N + V+ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDP--AGPNEECVQCDL 52
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
A A+ VN ++ D I+H + V+ F + + NI G + L EA + GQ R
Sbjct: 53 ADANAVNAMV--AGCDGIVHLGGIS-VEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR- 185
+ S++ G + +G ++ P Y +K E L Y +G R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 186 GNNVYGPNQF 195
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 66 IASADLVNFLLITESI-----DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
I DL+ F I +I D + + AAQ+ V SF + + G +LEA +
Sbjct: 56 IIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRT 115
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
+F ST E++G+ E + E + P +PY+ K + + Y +Y +
Sbjct: 116 VKPDTKFYQASTSEMFGKVQE---IPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNM 171
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 414 KGRLEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCR 473
+G + D L S KPTHV ++A P+ DW E TNV G++ +A
Sbjct: 71 EGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPD-DWAEDAA-----TNVQGSINVAKAAS 124
Query: 474 DHGI-LMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYD-N 531
G+ ++N+ T + A P D+P + Y +K E L D
Sbjct: 125 KAGVKRLLNFQTALCYGRPATVP-------IPIDSPTAPFTSYGISKTAGEAFLMMSDVP 177
Query: 532 VCTLRVRMPISSDLNNPRNFITKISRYNKVV----------NIPNSMTVLDELLPISIEM 581
V +LR+ +++ PR I I + K + + + + + D L + +
Sbjct: 178 VVSLRL-----ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSL 232
Query: 582 AKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNN----E 637
+ G++N + S E+ ++ Y V TL E V VAP +++
Sbjct: 233 QEGRPTGVFNVSTGEGHSIKEVFDVVLDY-------VGATLAEPVPV-VAPGADDVPSVV 284
Query: 638 MDASKLKKEF 647
+D SK + EF
Sbjct: 285 LDPSKTETEF 294
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 107 NIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDED--AVVGNHEASQLLPTNPYSATKA 164
N+ GT LL+A G +RRF+ S+ EVY E + V +H L P +PY TK
Sbjct: 102 NVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPEFLPVTEDHP---LCPNSPYGLTKL 157
Query: 165 GAEMLVMAYGRSYGLPVITTR 185
E LV + RS + + R
Sbjct: 158 LGEELVRFHQRSGAMETVILR 178
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 113/281 (40%), Gaps = 56/281 (19%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-----DYCSNLKNLIPSKAS----S 57
K +++ G G+ L + Y++ ++D L D+ L++L P + S
Sbjct: 2 KRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 59
Query: 58 NFKFVKG---DIASADLVNFLLITESI-----DTIMHFAAQ-----THVDNSFGNSFEFT 104
+K + G ++ D+ +F + ES D+++HF Q + +D S +
Sbjct: 60 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYTQ 117
Query: 105 KNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP---- 155
NN+ GT +L A K G+ + + T YG + +E + H + LP
Sbjct: 118 HNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQ 177
Query: 156 -TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL----------- 199
++ Y +K + +++G+ VYG + E+L
Sbjct: 178 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 237
Query: 200 --IPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECI 238
+ +F + A G PL ++G G R YL D+ + +C+
Sbjct: 238 TALNRFCVQAAVGHPLTVYGKGGQTRGYL---DIRDTVQCV 275
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN--------QFPEKLIPKFILLAMRG 210
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 143 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 202
Query: 211 LPLPIHGDGSNVRSYLYCEDVAEAFECILHK-GEVGH-VYNVGTKKERRVIDVAKDICKL 268
L + G G+ R ++Y D+A+ F +L + EV + +VG + E + + A+ + +
Sbjct: 203 SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVE- 261
Query: 269 FSMDPETSIKFVENRPFNDQRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQN 322
+MD + F + + + KL T L T +++ +++T W+T N
Sbjct: 262 -AMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDN 315
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN--------QFPEKLIPKFILLAMRG 210
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 201
Query: 211 LPLPIHGDGSNVRSYLYCEDVAEAFECILHK-GEVGH-VYNVGTKKERRVIDVAKDICKL 268
L + G G+ R ++Y D+A+ F +L + EV + +VG + E + + A+ + +
Sbjct: 202 SALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVE- 260
Query: 269 FSMDPETSIKFVENRPFNDQRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQN 322
+MD + F + + + KL T L T +++ +++T W+T N
Sbjct: 261 -AMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDN 314
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +L+TGAAG + + RL P +I+ L ++L L P A N + V+ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDP--AGPNEECVQCDL 52
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
A A+ VN ++ D I+H V+ F + + NI G + L EA + GQ R
Sbjct: 53 ADANAVNAMV--AGCDGIVHLGG-ISVEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR- 185
+ S++ G + +G ++ P +K E L Y +G R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 186 GNNVYGPNQF 195
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 56/279 (20%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-----DYCSNLKNLIPSKAS----SNF 59
+++ G G+ L + Y++ ++D L D+ L++L P + S +
Sbjct: 14 VMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 60 KFVKG---DIASADLVNFLLITESI-----DTIMHFAAQ-----THVDNSFGNSFEFTKN 106
K + G ++ D+ +F + ES D+++HF Q + +D S + N
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYTQHN 129
Query: 107 NIYGTHVLLEACKVTGQIRRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP-----T 156
N+ GT +L A K G+ + + T YG + +E + H + LP +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 157 NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL------------- 199
+ Y +K + +++G+ VYG + E+L
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 249
Query: 200 IPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECI 238
+ +F + A G PL ++G G R YL D+ + +C+
Sbjct: 250 LNRFCVQAAVGHPLTVYGKGGQTRGYL---DIRDTVQCV 285
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 6 PKNI-LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLI---PSKASSNF-K 60
P+ I LITG G S++ L+ E ++ ++ + N I P + K
Sbjct: 27 PRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMK 86
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIY-GTHVLLEACK 119
D+ A + + D + + AAQ+HV SF ++T + + G LLEA +
Sbjct: 87 LHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSF-EIPDYTADVVATGALRLLEAVR 145
Query: 120 V----TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
+G+ ++ + E++G T E + P +PY+A+K A + Y
Sbjct: 146 SHTIDSGRTVKYYQAGSSEMFGSTPPP----QSETTPFHPRSPYAASKCAAHWYTVNYRE 201
Query: 176 SYGL 179
+YGL
Sbjct: 202 AYGL 205
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+L+TGA GF+ASHV +L+ E+ V S L NL + + K+ G +
Sbjct: 14 VLVTGANGFVASHVVEQLL----EHGYKVRGTARSASKLANL---QKRWDAKY-PGRFET 65
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDN--SFGNSF-EFTKNNIYGTHVLLEACKVTGQIR 125
A + + L + I A H+ + SF N + E I GT L A T ++
Sbjct: 66 AVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 126 RFIHVST 132
RF+ S+
Sbjct: 126 RFVLTSS 132
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+L+TGA GF+ASHV +L+ E+ V S L NL + + K+ G +
Sbjct: 14 VLVTGANGFVASHVVEQLL----EHGYKVRGTARSASKLANL---QKRWDAKY-PGRFET 65
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDN--SFGNSF-EFTKNNIYGTHVLLEACKVTGQIR 125
A + + L + I A H+ + SF N + E I GT L A T ++
Sbjct: 66 AVVEDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 126 RFIHVST 132
RF+ S+
Sbjct: 126 RFVLTSS 132
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 56/279 (20%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-----DYCSNLKNLIPSKAS----SNF 59
+++ G G+ L + Y++ ++D L D+ L++L P + S +
Sbjct: 14 VMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 60 KFVKG---DIASADLVNFLLITESI-----DTIMHFAAQ-----THVDNSFGNSFEFTKN 106
K + G ++ D+ +F + ES D+++HF Q + +D S + N
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYTQHN 129
Query: 107 NIYGTHVLLEACKVTGQIRRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP-----T 156
N+ GT +L A K G+ + + YG + +E + H + LP +
Sbjct: 130 NVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 189
Query: 157 NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL------------- 199
+ Y +K + +++G+ VYG + E+L
Sbjct: 190 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 249
Query: 200 IPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECI 238
+ +F + A G PL ++G G R YL D+ + +C+
Sbjct: 250 LNRFCVQAAVGHPLTVYGKGGQTRGYL---DIRDTVQCV 285
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 33/221 (14%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYP-EYKIVVLDKLDYCSNLKNLIPSK----------- 54
+ +L+TGA GF+ ++ L+R + +++ L + + + + +
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 55 ----ASSNFKFVKGDIASADL----VNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKN 106
A+ + V GD + DL + + E++D I+ AA N+F E
Sbjct: 134 FKELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXV---NAF-PYHELFGP 189
Query: 107 NIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP-------- 158
N+ GT L+ +T +++ F +VST +V + A + + + PT
Sbjct: 190 NVAGTAELIR-IALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGG 248
Query: 159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKL 199
Y +K E+L+ LPV R + + +L
Sbjct: 249 YGTSKWAGEVLLREANDLCALPVAVFRCGXILADTSYAGQL 289
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 62/171 (36%), Gaps = 23/171 (13%)
Query: 80 SIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGET 139
S+D + H T D+ + I Q R ++ST VYG+
Sbjct: 60 SLDGVTHLLISTAPDSGGDPVLAALGDQI---------AARAAQFRWVGYLSTTAVYGDH 110
Query: 140 DEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKL 199
D V E + L PT + AE A LP+ R +YGP + P
Sbjct: 111 DGAWV---DETTPLTPTAARGRWRVXAEQQWQAVPN---LPLHVFRLAGIYGPGRGP--- 161
Query: 200 IPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVYNV 250
F L G+ I V S ++ ED+A+ + + G VYNV
Sbjct: 162 ---FSKLGKGGIRRIIKP--GQVFSRIHVEDIAQVLAASXARPDPGAVYNV 207
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 16/206 (7%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP-SKASSNFKFVKGD 65
+ + +TGA+GFI S + RL+ + V D + +K+L+ KA ++ K D
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNV-KKVKHLLDLPKAETHLTLWKAD 64
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
+ AD +F + + H A ++ + E K I G ++++C +R
Sbjct: 65 L--ADEGSFDEAIKGCTGVFHVATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSY 177
R + S+ + V + ++ + Y +K AE Y +
Sbjct: 122 RLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN 181
Query: 178 GLPVITTRGNNVYGP---NQFPEKLI 200
+ IT V GP + P LI
Sbjct: 182 NIDFITIIPTLVVGPFIMSSMPPSLI 207
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 107/276 (38%), Gaps = 52/276 (18%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I++TG AGFI S++ + + + I+V+D L + NL+ D+
Sbjct: 2 IIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLV-------------DLNI 47
Query: 69 ADLV---NFLLITES------IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
AD + +FL+ + ++ I H A + G NN + LL C
Sbjct: 48 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGAXSSTTEWDGKY--MMDNNYQYSKELLHYC- 104
Query: 120 VTGQIRR---FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 176
+ R F++ S+ YG D + + E + P N Y +K L Y R
Sbjct: 105 ----LEREIPFLYASSAATYGGRTSD-FIESREYEK--PLNVYGYSK----FLFDEYVRQ 153
Query: 177 YGLP-----VITTRGNNVYGPNQFPEKLIPKFILLAMRGL-----PLPIHGDGSNVRSYL 226
LP ++ R NVYGP + + + L P G + R ++
Sbjct: 154 I-LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFV 212
Query: 227 YCEDVAEAFECILHKGEVGHVYNVGTKKERRVIDVA 262
Y DVA+ L G V ++N+GT + VA
Sbjct: 213 YVGDVADVNLWFLENG-VSGIFNLGTGRAESFQAVA 247
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 62/281 (22%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
I++TG AGFI S++ + + + I+V+D L + NL+ D+
Sbjct: 49 IIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLV-------------DLNI 94
Query: 69 ADLV---NFLLITES------IDTIMHFAA---QTHVDNSF--GNSFEFTKNNIYGTHVL 114
AD + +FL+ + ++ I H A T D + N+++++K L
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE-------L 147
Query: 115 LEACKVTGQIRR---FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM 171
L C + R F++ S+ YG D + + E + P N + +K L
Sbjct: 148 LHYC-----LEREIPFLYASSAATYGGRTSD-FIESREYEK--PLNVFGYSK----FLFD 195
Query: 172 AYGRSYGLP-----VITTRGNNVYGPNQFPEKLIPKFILLAMRGL-----PLPIHGDGSN 221
Y R LP ++ R NVYGP + + + L P G +
Sbjct: 196 EYVRQI-LPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENF 254
Query: 222 VRSYLYCEDVAEAFECILHKGEVGHVYNVGTKKERRVIDVA 262
R ++Y DVA+ L G V ++N+GT + VA
Sbjct: 255 KRDFVYVGDVADVNLWFLENG-VSGIFNLGTGRAESFQAVA 294
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 416 RLEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDH 475
RLED + +P + NAA +T +VD CE K + N + +
Sbjct: 48 RLEDF------IIKKRPDVIINAAAMT---DVDKCEIEKEKAYKINAEAVRHIVRAGKVI 98
Query: 476 GILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPN 509
+++ +T +F+ G YKEED PN
Sbjct: 99 DSYIVHISTDYVFD-------GEKGNYKEEDIPN 125
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family
Protein From Shigella Flexneri
Length = 236
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 7 KNILITGAAGFIASHVCNRL 26
KN+LI GA G IA HV N+L
Sbjct: 24 KNVLILGAGGQIARHVINQL 43
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 152 QLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG 191
Q NPY +K E L+ Y YG V R N++G
Sbjct: 96 QATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFG 135
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 86 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG 137
H+A Q HV +S G EF +N G H + A TG + + + T + G
Sbjct: 113 HYATQEHVYDSLGE--EFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPG 162
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 152 QLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG 191
Q NPY +K E L+ Y YG V R N++G
Sbjct: 96 QATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFG 135
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 431 KPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHGILMMNYATGCIFEY 490
KP V N A T VD CE + N G LA G ++ +T +F+
Sbjct: 63 KPNVVINCAAHTA---VDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDG 119
Query: 491 DAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLK 527
+A P I +E P S Y KTK E +K
Sbjct: 120 EAKEP----ITEFDEVNPQ---SAYGKTKLEGENFVK 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,270,948
Number of Sequences: 62578
Number of extensions: 865209
Number of successful extensions: 2371
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2101
Number of HSP's gapped (non-prelim): 137
length of query: 668
length of database: 14,973,337
effective HSP length: 105
effective length of query: 563
effective length of database: 8,402,647
effective search space: 4730690261
effective search space used: 4730690261
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)