BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005949
(668 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 1256 bits (3250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/669 (88%), Positives = 633/669 (94%), Gaps = 1/669 (0%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
MA+YTPKNILITGAAGFIASHV NRLIR+YP+YKIVVLDKLDYCSNLKNL PSK S NFK
Sbjct: 1 MASYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFK 60
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
FVKGDIASADLVN LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV
Sbjct: 61 FVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
TGQIRRFIHVSTDEVYGETDEDA+VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP
Sbjct: 121 TGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
Query: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH 240
VITTRGNNVYGPNQFPEKLIPKFILLAMRG LPIHGDGSNVRSYLYCEDVAEAFE +LH
Sbjct: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 241 KGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSL 300
KGEVGHVYN+GTKKERRV DVAKDICKLF+MDPE +IKFV+NRPFNDQRYFLDDQKL L
Sbjct: 241 KGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKKL 300
Query: 301 GWSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSV 360
GWSERT WEEGL+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGRHFDGSE+N +++
Sbjct: 301 GWSERTTWEEGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRHFDGSEDNSLAATL 360
Query: 361 STNNIQSRMVVPVSKCS-SPRKPSMKFLIYGRTGWIGGLLGKLCEKEGIPFEYGKGRLED 419
S Q+ MVVP + + +P+KPS+KFLIYG+TGWIGGLLGK+C+K+GI +EYGKGRLED
Sbjct: 361 SEKPSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLED 420
Query: 420 CSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHGILM 479
SSL+ D+QSVKPTHVFN+AGVTGRPNVDWCESHKT+TIR NVAGTLTLADVCR+HG+LM
Sbjct: 421 RSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLM 480
Query: 480 MNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRM 539
MN+ATGCIFEYD HPEGSGIG+KEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRM
Sbjct: 481 MNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRM 540
Query: 540 PISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVS 599
PISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNL+GIWNFTNPGVVS
Sbjct: 541 PISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVS 600
Query: 600 HNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIK 659
HNEILEMY+ YINPEFKW NFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIK+SLIK
Sbjct: 601 HNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIK 660
Query: 660 YVFEPNKKT 668
Y + PNKKT
Sbjct: 661 YAYGPNKKT 669
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/668 (85%), Positives = 617/668 (92%), Gaps = 4/668 (0%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
MATY PKNILITGAAGFIASHV NRL+R+YP+YKIVVLDKLDYCSNLKNL PSK+S NFK
Sbjct: 1 MATYKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFK 60
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
FVKGDIASADLVN+LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV
Sbjct: 61 FVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
TGQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP
Sbjct: 121 TGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
Query: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH 240
VITTRGNNVYGPNQFPEKLIPKFILLAM G PLPIHGDGSNVRSYLYCEDVAEAFE +LH
Sbjct: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 241 KGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSL 300
KGEV HVYN+GT +ERRVIDVA DI KLF +DP+++I++VENRPFNDQRYFLDDQKL L
Sbjct: 241 KGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKKL 300
Query: 301 GWSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSV 360
GW ERT WEEGLRKT+EWYT+NP+WWGDVSGALLPHPRMLMMPG RH DGS+E+K
Sbjct: 301 GWCERTNWEEGLRKTMEWYTENPEWWGDVSGALLPHPRMLMMPGDRHSDGSDEHKNADGN 360
Query: 361 STNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIGGLLGKLCEKEGIPFEYGKGRLEDC 420
T + V P S K S+KFLIYG+TGW+GGLLGKLCEK+GIP+EYGKGRLED
Sbjct: 361 QTFTV----VTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDR 416
Query: 421 SSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHGILMM 480
+SLIAD++S+KP+HVFNAAG+TGRPNVDWCESHKT+TIR NVAGTLTLADVCR++ +LMM
Sbjct: 417 ASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMM 476
Query: 481 NYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMP 540
N+ATGCIFEYDAAHPEGSGIG+KEED PNFTGSFYSKTKAMVEELL+E+DNVCTLRVRMP
Sbjct: 477 NFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMP 536
Query: 541 ISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSH 600
ISSDLNNPRNFITKISRYNKVVNIPNSMT+LDELLPISIEMAKRNLRGIWNFTNPGVVSH
Sbjct: 537 ISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSH 596
Query: 601 NEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKY 660
NEILEMYK YI P+FKW NF LEEQAKVIVAPRSNNEMD +KL KEFPE+LSIKDSLIKY
Sbjct: 597 NEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKY 656
Query: 661 VFEPNKKT 668
VFEPNK+T
Sbjct: 657 VFEPNKRT 664
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/667 (85%), Positives = 615/667 (92%), Gaps = 3/667 (0%)
Query: 2 ATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKF 61
TY PKNILITGAAGFIASHV NRLIRNYP+YKIVVLDKLDYCS+LKNL PS +S NFKF
Sbjct: 4 TTYKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKF 63
Query: 62 VKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
VKGDIAS DLVN+LLITE+IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT
Sbjct: 64 VKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 123
Query: 122 GQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
GQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV
Sbjct: 124 GQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 183
Query: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHK 241
ITTRGNNVYGPNQFPEK+IPKFILLAM G PLPIHGDGSNVRSYLYCEDVAEAFE +LHK
Sbjct: 184 ITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 243
Query: 242 GEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLG 301
GE+GHVYNVGTK+ERRVIDVA+DICKLF DPE+SI+FVENRPFNDQRYFLDDQKL LG
Sbjct: 244 GEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLG 303
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGRHFDGSEENKAVSSVS 361
W ERT WE+GL+KT++WYTQNP+WWGDVSGALLPHPRMLMMPGGR DGS E K VSS
Sbjct: 304 WQERTNWEDGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRLSDGSSEKKDVSS-- 361
Query: 362 TNNIQSRMVVPVSKCSSPRKPSMKFLIYGRTGWIGGLLGKLCEKEGIPFEYGKGRLEDCS 421
N +Q+ VV S K S+KFLIYG+TGW+GGLLGKLCEK+GI +EYGKGRLED +
Sbjct: 362 -NTVQTFTVVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRA 420
Query: 422 SLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCRDHGILMMN 481
SL+AD++S+KPTHVFNAAG+TGRPNVDWCESHK +TIR NVAGTLTLADVCR++ +LMMN
Sbjct: 421 SLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMN 480
Query: 482 YATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPI 541
+ATGCIFEYDA HPEGSGIG+KEED PNF GSFYSKTKAMVEELL+E+DNVCTLRVRMPI
Sbjct: 481 FATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPI 540
Query: 542 SSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHN 601
SSDLNNPRNFITKISRYNKVV+IPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHN
Sbjct: 541 SSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHN 600
Query: 602 EILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYV 661
EILEMYK YI P FKW NFT+EEQAKVIVA RSNNEMD SKL KEFPE+LSIK+SL+KYV
Sbjct: 601 EILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYV 660
Query: 662 FEPNKKT 668
FEPNK+T
Sbjct: 661 FEPNKRT 667
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 328 bits (841), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 217/336 (64%), Gaps = 9/336 (2%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +L+TG AGFIASHV L+ +YP+Y IV LDKLDYC++LKNL P N+KF++GDI
Sbjct: 18 KRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDI 77
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ V L E ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A G + +
Sbjct: 78 CDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAG-VEK 136
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDQEF---DESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 187 NNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGH 246
+NVYGP+Q+PEK+IPKFI L IHG G R++LY DV EAF +L KGE G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGE 253
Query: 247 VYNVGTKKERRVIDVAKDICKLF-----SMDPETSIKFVENRPFNDQRYFLDDQKLTSLG 301
+YN+GT E V+ +AK++ +L + E+ + +V +RP ND RY + +K+ SLG
Sbjct: 254 IYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLG 313
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHP 337
W + WEEG++KT+EWY +N W + AL P P
Sbjct: 314 WKPKVPWEEGIKKTVEWYRKNFHNWKNAEKALEPFP 349
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 318 bits (816), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 215/336 (63%), Gaps = 9/336 (2%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +L+TG AGFIASH+ L+ +YP Y I+ LDKLDYC++LKNL N+KF++GDI
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ V L TE ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A ++ +
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 187 NNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGH 246
+NVYGP+Q+PEK+IPKFI L IHG G R++LY DV EAF +L KG+ G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGE 253
Query: 247 VYNVGTKKERRVIDVAKDICKLF-----SMDPETSIKFVENRPFNDQRYFLDDQKLTSLG 301
+YN+GT E V+ +AK++ +L + E + +V +RP ND RY + +K+ LG
Sbjct: 254 IYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLG 313
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHP 337
W + W+EG++KTIEWY +N W +V AL P P
Sbjct: 314 WRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFP 349
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/336 (46%), Positives = 215/336 (63%), Gaps = 9/336 (2%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K +L+TG AGFIASH+ L+ +YP Y I+ LDKLDYC++LKNL N+KF++GDI
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ V L TE ID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A ++ +
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 187 NNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGH 246
+NVYGP+Q+PEK+IPKFI L IHG G R++LY DV EAF +L KG+ G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGE 253
Query: 247 VYNVGTKKERRVIDVAKDICKLF-----SMDPETSIKFVENRPFNDQRYFLDDQKLTSLG 301
+YN+GT E V+ +AK++ +L + E + +V++RP ND RY + +K+ LG
Sbjct: 254 IYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLG 313
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHP 337
W + W+EG++KTIEWY +N W + AL P P
Sbjct: 314 WRPKVPWKEGIKKTIEWYRENFHNWKNAEKALEPFP 349
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 314 bits (805), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 219/359 (61%), Gaps = 42/359 (11%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
ILITG AGFI SH+ L + + KI+VLDKLDYCSN+ NL NFKF KG+I
Sbjct: 12 ILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILD 71
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
++L+ + E ID ++H AA THVDNSF S +FT+NNI GTH LLE CK ++++FI
Sbjct: 72 SELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCK-NYKLKKFI 130
Query: 129 HVSTDEVYGE--------TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
+VSTDEVYG + ++E S L PTNPYSA+KAGAE LV +Y +S+ LP
Sbjct: 131 YVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLP 190
Query: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH 240
VI TR NN+YGP Q+PEK+IPKFI L + IHG G N R+YLY +D+ AF+ IL
Sbjct: 191 VIITRANNIYGPKQYPEKIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIVSAFDIILR 250
Query: 241 KGEVGHVYNVGTKKERRVIDVAKDICKL-------------------------------- 268
KGE+G+VYN+GT E +DVAK I +
Sbjct: 251 KGEIGNVYNIGTDFEISNLDVAKKIINISINLNNNNNNNNNNNNNNNNNNNNNNNNNNND 310
Query: 269 FS-MDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEEGLRKTIEWYTQNPDWW 326
F+ MD + I ++++RPFND RY ++ KL++LGW + WEEG+ KT WY N ++W
Sbjct: 311 FNIMDYKKFINYIDDRPFNDHRYNINYSKLSNLGWKKSISWEEGIEKTFIWYKNNRNYW 369
>sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R141 PE=3 SV=1
Length = 323
Score = 283 bits (723), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/317 (45%), Positives = 207/317 (65%), Gaps = 6/317 (1%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
KNIL+TG GFI S+ N + Y I V D DYC++++N+ + ++ K +KGDI
Sbjct: 2 KNILVTGGLGFIGSNFVNHISSKYDNVNIYVYDIGDYCASVENV---EWNNRTKLIKGDI 58
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ DL+ L IDTI+HFAA +HVDNSF NS FT+ N++GTHVLLE ++ G+++
Sbjct: 59 RNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLECSRMYGKLKL 118
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
F H+STDEVYGE D + E S L PTNPY+ATKAGAE +V +Y SY LP+I R
Sbjct: 119 FFHMSTDEVYGEIDTTDT--SREVSLLCPTNPYAATKAGAEHIVKSYFLSYKLPIIIARC 176
Query: 187 NNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGH 246
NNVYG NQ+PEKLIPKFI + G L I G G++ R++++ DVA+A + +++ G +G
Sbjct: 177 NNVYGRNQYPEKLIPKFICSLLDGKKLHIQGTGNSRRNFIHAIDVADAVDLVINNGVIGE 236
Query: 247 VYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSE-R 305
YN+G E V+DVA+ +C + ++ E +++V +R FND RY + + K+ SLGW + R
Sbjct: 237 TYNIGVTNEHSVLDVAQILCDIAGVNLENQLEYVPDRLFNDFRYNITNDKIKSLGWEQSR 296
Query: 306 TIWEEGLRKTIEWYTQN 322
+++ L + +WY N
Sbjct: 297 KDFKKELVELFDWYKVN 313
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 190/345 (55%), Gaps = 25/345 (7%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
+ ILITG AGFI S + R I N +VV+DKL Y NL +L P S F F K DI
Sbjct: 2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV------ 120
+ + D +MH AA++HVD S F + NI GT+ LLEA +
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 121 --TGQIRRFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 176
RF H+STDEVYG+ + +D E + P++PYSA+KA ++ LV A+ R+
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT---ETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 177 YGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFE 236
YGLP + T +N YGP FPEKLIP IL A+ G LP++G+G +R +LY ED A A
Sbjct: 178 YGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 237 CILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDPETS---------IKFVENRPFN 286
C+ G+VG YN+G ER+ +DV + IC+L + P I FV +RP +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 287 DQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGDVS 330
D RY +D K+ LGW + +E G+RKT++WY N WW V
Sbjct: 298 DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQVQ 342
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 197/345 (57%), Gaps = 27/345 (7%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
+ IL+TG AGFI S V +IRN + +V +DKL Y NL++L + + F + DI
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTRD-AVVNVDKLTYAGNLESLTEVADNPRYAFEQVDI 60
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ--- 123
++ + D +MH AA++HVD S G++ EF + NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMP 120
Query: 124 -----IRRFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
RF H+STDEVYG+ TD+ E + P++PYSA+KA ++ LV A+ R
Sbjct: 121 SEQHEAFRFHHISTDEVYGDLGGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLR 176
Query: 176 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAF 235
+YGLP I T +N YGP FPEKLIP IL A+ G PLP++GDG +R +L+ ED A A
Sbjct: 177 TYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARAL 236
Query: 236 ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDPETS---------IKFVENRPF 285
++ +G VG YN+G E+ I+V K IC L + PE I FV++RP
Sbjct: 237 YQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPG 296
Query: 286 NDQRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQNPDWWGDV 329
+D RY +D K+ LGW +E GLRKT++WY N WW +V
Sbjct: 297 HDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNV 341
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 188/324 (58%), Gaps = 13/324 (4%)
Query: 9 ILITGAAGFIASHVCNRLIRN-----YPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVK 63
IL+TG AGFI SH LI P ++ V+DKL Y NL+NL + A F FV+
Sbjct: 3 ILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVR 62
Query: 64 GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
GDI L+ L+ DT+ HFAA+THVD S S F +N+ GT VLL+A +
Sbjct: 63 GDICDEGLIEGLMARH--DTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAA-LRHH 119
Query: 124 IRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
I RF+HVSTDEVYG D + H L P +PY+A+KAG+++L +AY +++G+ V+
Sbjct: 120 IGRFLHVSTDEVYGSIDTGSWAEGHP---LAPNSPYAASKAGSDLLALAYHQTHGMDVVV 176
Query: 184 TRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGE 243
TR +N YGP QFPEK+IP F+ + GL +P++GDG N+R +L+ D L G
Sbjct: 177 TRCSNNYGPRQFPEKMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGR 236
Query: 244 VGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS-LGW 302
G VY++G E +++ + + + P + I FV +R +D+RY LD K+ LG+
Sbjct: 237 AGEVYHIGGGWEATNLELTEILLEACGA-PASRISFVTDRKGHDRRYSLDYSKIAGELGY 295
Query: 303 SERTIWEEGLRKTIEWYTQNPDWW 326
R + +G+ +T+ WY N WW
Sbjct: 296 RPRVDFTDGIAETVAWYRANRSWW 319
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 245 bits (626), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 191/339 (56%), Gaps = 23/339 (6%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AGFI S V +I N + +V +DKL Y NL++L S + F DI
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADICD 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------V 120
A ++ + D +MH AA++HVD S F + NI GT+VLLEA +
Sbjct: 62 AVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDE 121
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 173
+ RF H+STDEVYG+ N+EA L P++PYSA+KA ++ LV A+
Sbjct: 122 KKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAE 233
R+YGLP I T +N YGP FPEKLIP IL A+ G LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 234 AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFS--MDPETS----IKFVENRPFND 287
A ++ +G+ G YN+G E++ IDV IC L + E S I +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 288 QRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDW 325
+RY +D K++ LGW + +E G+RKT+EWY N +W
Sbjct: 302 RRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNW 340
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 197/344 (57%), Gaps = 27/344 (7%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
M T KNIL+TG AGFI S V +I+N + +V LDKL Y NL++L + +
Sbjct: 1 MQTEGKKNILVTGGAGFIGSAVVRHIIQNTRD-SVVNLDKLTYAGNLESLTDIADNPRYA 59
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
F + DI ++ + D +MH AA++HVD + G++ EF + NI GT LLEA +
Sbjct: 60 FEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARA 119
Query: 121 TGQIR--------RFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEML 169
Q RF H+STDEVYG+ TD+ E + P++PYSA+KA A+ L
Sbjct: 120 YWQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFT----ETTPYAPSSPYSASKAAADHL 175
Query: 170 VMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCE 229
V A+ R+Y LP I + +N YGP QFPEKLIP IL A+ G PLP++GDG+ +R +L+ E
Sbjct: 176 VRAWQRTYRLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVYGDGAQIRDWLFVE 235
Query: 230 DVAEAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDPETS---------IKF 279
D A A ++ +G VG YN+G E+ ++V K IC L + PE I F
Sbjct: 236 DHARALYQVVTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVARYEDLITF 295
Query: 280 VENRPFNDQRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQN 322
V++RP +D RY +D K+ LGW +E GLRKT++WY N
Sbjct: 296 VQDRPGHDARYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN 339
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 196/347 (56%), Gaps = 24/347 (6%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AGFI S V +I N + +V +DKL Y NL++L S + F DI
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLAEISDSERYSFENADICD 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------V 120
A+ +D +MH AA++HVD S F + NI GT+VLLEA +
Sbjct: 62 AEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDE 121
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 173
+ RF H+STDEVYG+ V ++E QL P++PYSA+KA ++ LV A+
Sbjct: 122 KKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAE 233
R+YGLP I + +N YGP FPEKLIP IL A+ G LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVSNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 234 AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFS--MDPETS----IKFVENRPFND 287
A ++ +G+ G YN+G E++ IDV IC L + E S I +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVFTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 288 QRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGDV-SGA 332
+RY +D K++ LGW + +E G+RKT+EWY N +W +V SGA
Sbjct: 302 RRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNWVENVKSGA 348
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 193/338 (57%), Gaps = 27/338 (7%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
+ IL+TG AGFI S V +IRN + +V LDKL Y NL++L + + F + DI
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTQD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 60
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR- 125
++ + D +MH AA++HVD S G++ EF + NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMP 120
Query: 126 -------RFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
RF H+STDEVYG+ TD+ E + P++PYSA+KA ++ LV A+ R
Sbjct: 121 SEKHEAFRFHHISTDEVYGDLSGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLR 176
Query: 176 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAF 235
+YGLP I T +N YGP FPEKLIP IL A+ G PLP++GDG +R +L+ ED A A
Sbjct: 177 TYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARAL 236
Query: 236 ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDPETS---------IKFVENRPF 285
++ +G VG YN+G E+ I+V K IC L + PE I FV++RP
Sbjct: 237 YQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPG 296
Query: 286 NDQRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQN 322
+D RY +D K+ LGW +E GLRKT++WY N
Sbjct: 297 HDARYAVDTAKIRRDLGWQPLETFESGLRKTVQWYLDN 334
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 242 bits (617), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 193/347 (55%), Gaps = 24/347 (6%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
ILITG AGFI S V +I+N + +V +DKL Y NL++L S+ + F DI
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----VTGQI 124
+ + + D +MH AA++HVD S F + NI GT+ LLE + G+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 125 R----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAY 173
+ RF H+STDEVYG+ V N E + P++PYSA+KA ++ LV A+
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAE 233
R+YGLP I T +N YGP FPEKLIP IL A+ G PLPI+G G +R +LY ED A
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHAR 241
Query: 234 AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF------SMDPETSIKFVENRPFND 287
A ++ +G+ G YN+G E++ +DV IC L + I +V +RP +D
Sbjct: 242 ALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301
Query: 288 QRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGDV-SGA 332
+RY +D K++ LGW +E G+RKT+EWY N W +V SGA
Sbjct: 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGA 348
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 192/347 (55%), Gaps = 24/347 (6%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AGFI S V +I N + +V +DKL Y N ++L S + F DI
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNRESLADVSDSERYVFEHADICD 61
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR--- 125
A + + D +MH AA++HVD S F + NI GT+VLLEA +
Sbjct: 62 APAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSD 121
Query: 126 -----RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 173
RF H+STDEVYG+ V N E L P++PYSA+KA ++ LV A+
Sbjct: 122 KKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAE 233
R+YGLP I T +N YGP FPEKLIP IL A+ G LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 234 AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFS--MDPETS----IKFVENRPFND 287
A ++ +G+ G YN+G E++ IDV IC L + E S I +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 288 QRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQNPDWWGDV-SGA 332
+RY +D +K+ +LGW + +E G+RKT+EWY N W +V SGA
Sbjct: 302 RRYAIDAEKIGRALGWKPQETFESGIRKTVEWYLSNTKWVDNVKSGA 348
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 187/342 (54%), Gaps = 26/342 (7%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
MAT+ L+TG AGFI + + ++V LD L Y NL L + +++
Sbjct: 1 MATW-----LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHI 53
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC-- 118
FVKGDI LV LL D +++FAA++HVD S F + N+ GT LLEA
Sbjct: 54 FVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRD 113
Query: 119 --KVTGQIRR----FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMA 172
K RR F+HVSTDEVYG E E + P +PYSA+KA ++ LV A
Sbjct: 114 YWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRA 171
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVA 232
+ +YGLPV+TT +N YGP FPEKLIP I A+ G PLP++GDG VR +L+ D
Sbjct: 172 FHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHC 231
Query: 233 EAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD--------PETSIKFVENRP 284
EA +L KG VG YNVG ER+ I+V + IC L E+ I +V +RP
Sbjct: 232 EAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRP 291
Query: 285 FNDQRYFLDDQKLTS-LGWSERTIWEEGLRKTIEWYTQNPDW 325
+D+RY +D KL LGW +E+G+ +T++WY N W
Sbjct: 292 GHDRRYAIDASKLKDELGWEPAYTFEQGIAQTVDWYLTNQTW 333
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 7/146 (4%)
Query: 414 KGRLEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCR 473
KG + D + + +Q +P V N A +VD I+TNV GTL L + R
Sbjct: 56 KGDIGDGALVTRLLQEHQPDAVLNFAA---ESHVDRSIEGPGAFIQTNVVGTLALLEAVR 112
Query: 474 DHGILMMNYATGCIFEYDAAHPEGSG----IGYKEEDTPNFTGSFYSKTKAMVEELLKEY 529
D+ + + + E G G E TP S YS +KA + L++ +
Sbjct: 113 DYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAF 172
Query: 530 DNVCTLRVRMPISSDLNNPRNFITKI 555
+ L V S+ P +F K+
Sbjct: 173 HHTYGLPVLTTNCSNNYGPYHFPEKL 198
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 197/349 (56%), Gaps = 19/349 (5%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AGFI S + L+ E ++ +DKL Y NL +L P + N++F++ DI
Sbjct: 3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICD 60
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TGQI 124
+N T D ++H AA++HVD S + +F + N+ GT +LE + Q
Sbjct: 61 RVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQN 120
Query: 125 RR----FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
R+ +HVSTDEVYG + E S P++PYSA+KA ++ A+ R+YGLP
Sbjct: 121 RKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGLP 178
Query: 181 VITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH 240
V+ + +N YGP FPEKLIP IL A+ PLP++G GSN+R +LY +D A A I+
Sbjct: 179 VVISNCSNNYGPFHFPEKLIPLMILNALDRKPLPVYGTGSNIRDWLYVDDHARALWLIVR 238
Query: 241 KGEVGHVYNVGTKKERRVIDVAKDICKLFS-MDPETS-----IKFVENRPFNDQRYFLDD 294
+G G YNVG + E R IDV IC L + P S I FV++RP +D RY +D
Sbjct: 239 EGRPGEKYNVGGRNELRNIDVVNRICLLLDELSPNASHYGDLITFVKDRPGHDARYAIDA 298
Query: 295 QKL-TSLGWSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMM 342
KL T LGW + ++ G+RKT+EWY +N WW + + R+ ++
Sbjct: 299 TKLETELGWKAQENFDTGIRKTVEWYLENGWWWQPLRDKVYSGERLGLL 347
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 186/342 (54%), Gaps = 26/342 (7%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
MAT+ L+TG AGFI + + ++V LD L Y NL L + +++
Sbjct: 1 MATW-----LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHI 53
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEAC-- 118
FVKGDI LV LL D +++FAA++HVD S F + N+ GT LLEA
Sbjct: 54 FVKGDIGDGALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRD 113
Query: 119 --KVTGQIRR----FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMA 172
K RR F+HVSTDEVYG E E + P +PYSA+KA ++ LV A
Sbjct: 114 YWKALPDTRRDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRA 171
Query: 173 YGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVA 232
+ +YGLPV+TT +N YGP FPEKLIP I A+ G PLP++GDG VR +L+ D
Sbjct: 172 FHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHC 231
Query: 233 EAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMD--------PETSIKFVENRP 284
EA +L KG VG YNVG ER+ I+V + IC L E+ I +V +RP
Sbjct: 232 EAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRP 291
Query: 285 FNDQRYFLDDQKLTS-LGWSERTIWEEGLRKTIEWYTQNPDW 325
+D+RY +D KL LGW +E+G+ T++WY N W
Sbjct: 292 GHDRRYAIDASKLKDELGWEPAYTFEQGIALTVDWYLTNQTW 333
Score = 33.9 bits (76), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 7/146 (4%)
Query: 414 KGRLEDCSSLIADVQSVKPTHVFNAAGVTGRPNVDWCESHKTDTIRTNVAGTLTLADVCR 473
KG + D + + +Q +P V N A +VD I+TNV GTL L + R
Sbjct: 56 KGDIGDGALVTRLLQEHQPDAVLNFAA---ESHVDRSIEGPGAFIQTNVVGTLALLEAVR 112
Query: 474 DHGILMMNYATGCIFEYDAAHPEGSG----IGYKEEDTPNFTGSFYSKTKAMVEELLKEY 529
D+ + + + E G G E TP S YS +KA + L++ +
Sbjct: 113 DYWKALPDTRRDAFRFLHVSTDEVYGTLGETGKFTETTPYAPNSPYSASKAASDHLVRAF 172
Query: 530 DNVCTLRVRMPISSDLNNPRNFITKI 555
+ L V S+ P +F K+
Sbjct: 173 HHTYGLPVLTTNCSNNYGPYHFPEKL 198
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 194/317 (61%), Gaps = 7/317 (2%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K+ LITG AGFI ++R + +I VLDKL Y S+ + + K +S F+FVKGDI
Sbjct: 3 KSYLITGGAGFIGLTFTKLMLRE-TDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDI 61
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ + ++ E+ D ++HFAA++HVD S + F N+ GT+ L EA + G+ ++
Sbjct: 62 SVQEDIDRAF-DETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAV-LKGKAKK 119
Query: 127 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 186
IH+STDEVYG+ D E + L P NPYSA+KA +++LV++Y +++ LP I TR
Sbjct: 120 LIHISTDEVYGDLKADDPAFT-ETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRC 178
Query: 187 NNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGH 246
+N YGP Q EK+IP I A +GLP+P++GDG +R +L+ ED A + IL KG G
Sbjct: 179 SNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLILEKGTDGE 238
Query: 247 VYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS-LGWSER 305
VYN+G ER ++A I K + E VE+R +D+RY ++ KL + LGW +
Sbjct: 239 VYNIGGGNERTNKELASVILK--HLGCEELFAHVEDRKGHDRRYAINASKLKNELGWRQE 296
Query: 306 TIWEEGLRKTIEWYTQN 322
+EEG+ +TI+WYT N
Sbjct: 297 VTFEEGIARTIQWYTDN 313
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 189/336 (56%), Gaps = 25/336 (7%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIA 67
NIL+TG +GFI S + R I N+ + ++ +DKL Y +N L + + + F K DI
Sbjct: 3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-------- 119
+++ + D +MH AA++HVD S + +F + NI GT+ LLE K
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 120 VTGQIRRFIHVSTDEVYGETD--EDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY 177
RF H+STDEVYG+ E A E S P++PYSA+KA + LV A+ R+Y
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTY 178
Query: 178 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFEC 237
GLPVI T +N YG Q EKLIP I A+ G PLPI+GDG +R +L+ ED +A
Sbjct: 179 GLPVIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYL 238
Query: 238 ILHKGEVGHVYNVGTKKERRVIDVAKDICKLF-SMDP---------ETSIKFVENRPFND 287
+L KG VG YN+G E+ ++V K IC+L + P E + FV++RP +D
Sbjct: 239 VLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNHIKYYEDLMTFVKDRPGHD 298
Query: 288 QRYFLDDQKL-TSLGWSERTIWEEGLRKTIEWYTQN 322
RY LD K+ LGW + +E+GLR+T++WY N
Sbjct: 299 VRYSLDCSKIHAELGWQPQITFEQGLRQTVKWYLFN 334
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 178/322 (55%), Gaps = 11/322 (3%)
Query: 8 NILITGAAGFIASHVCNRLIR--NYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGD 65
++L+TGAAGFI S L+ P+ + LD L Y N NL + ++F +GD
Sbjct: 4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGD 63
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I A + D ++H AA++HVD S ++ F + N++GT LL+A G +
Sbjct: 64 ICDAPGRR---VMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VA 119
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
F+ VSTDEVYG + + E L P +PYSA+KA ++L +A+ S+GL V TR
Sbjct: 120 SFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTR 176
Query: 186 GNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVG 245
+N YGP QFPEKLIP+FI L M G +P++GDG NVR +L+ +D E + +G G
Sbjct: 177 CSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAG 236
Query: 246 HVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLGWSE 304
VYN+G ++ + + D S+++VE+R +D+RY +D ++ LG++
Sbjct: 237 RVYNIGGGATLSNKELVGLLLEAAGAD-WGSVEYVEDRKGHDRRYAVDSTRIQRELGFAP 295
Query: 305 RTIWEEGLRKTIEWYTQNPDWW 326
+GL T+ WY ++ WW
Sbjct: 296 AVDLADGLAATVAWYHKHRSWW 317
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 27/220 (12%)
Query: 458 IRTNVAGTLTLADVCRDHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSK 517
+RTNV GT TL D HG+ ++ E + GS ED P S YS
Sbjct: 99 VRTNVHGTQTLLDAATRHGV--ASFVQVSTDEVYGSLEHGS----WTEDEPLRPNSPYSA 152
Query: 518 TKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITK--------------ISRYNKVVN 563
+KA + L + L VR+ S+ PR F K + Y +N
Sbjct: 153 SKASGDLLALAHHVSHGLDVRVTRCSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLN 212
Query: 564 IPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLE 623
+ + V D + I + ++N +S+ E++ + + ++ V + +
Sbjct: 213 VREWLHVDDHVRGIEAVRTRGRAGRVYNIGGGATLSNKELVGLLLEAAGADWGSVEYVED 272
Query: 624 EQAKVIVAPRSNNEMDASKLKKE--FPELLSIKDSLIKYV 661
+ +D++++++E F + + D L V
Sbjct: 273 RKGH-----DRRYAVDSTRIQRELGFAPAVDLADGLAATV 307
>sp|Q9HDU4|YHEB_SCHPO Uncharacterized protein PB2B2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPB2B2.11 PE=3 SV=1
Length = 365
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 191/354 (53%), Gaps = 46/354 (12%)
Query: 10 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKA--SSNFKFVKGDIA 67
LITG AGFI S+ + + YP++ +DKL Y SN + SK NF+F++ D+A
Sbjct: 13 LITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLA 72
Query: 68 S--ADLVNFLLITESIDTIMH---FAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV-- 120
+ L F++ I+ I H FAA++ VD SF + FTKNNI T LLE ++
Sbjct: 73 TNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQNLLECVRILL 132
Query: 121 --TGQIRR---FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
++R F+HVSTDEVYGE DE+A V E S+L PT+PY+A+KA ++++ +Y
Sbjct: 133 GKKEELRNRLNFVHVSTDEVYGEQDENASVD--EKSKLNPTSPYAASKAAVDLIIQSYRY 190
Query: 176 SYGLPVITTRGNNVYGPNQFPEKLIP-------KFILLAMRGL---PLPIHGDGSNVRSY 225
SY + V R NNVYGP Q+ EKLIP KFI + + + +HGDG + R Y
Sbjct: 191 SYKISVTVIRANNVYGPRQYEEKLIPMTLGKLKKFINQKSQKIMQDKITLHGDGLHKRKY 250
Query: 226 LYCEDV------------AEAFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLF---- 269
L+ D +E + L G ++N+G+ E + + K IC F
Sbjct: 251 LHIYDFINAIDLVWMKQGSEVYHSTLESKMSGQIFNIGSDDEIDNLSLVKFICDYFLYRK 310
Query: 270 ----SMDPETSIKFVENRPFNDQRYFLDDQKLTSLGWSERTIWEEGLRKTIEWY 319
++D I FV++R +ND RY L+ +K+ SLGW + E GLRK I+ Y
Sbjct: 311 LSLKNLDYSKYITFVQDRNYNDSRYSLNYEKIKSLGWRPQIPLETGLRKLIDEY 364
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 186/320 (58%), Gaps = 9/320 (2%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+L+TG AGFI ++ + +R +P+ + VLD L Y ++L + + V+GDI
Sbjct: 3 LLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESL--ADVEDAIRLVQGDITD 60
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
A+LV+ L+ ES D ++HFAA++HVDN+ N F N+ GT +LEA + G R
Sbjct: 61 AELVS-QLVAES-DAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGV--RLH 116
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
H+STDEVYG+ + D E++ P++PYSATKAGA+MLV A+ RSYG+ + +N
Sbjct: 117 HISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCSN 176
Query: 189 VYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY 248
YGP Q EK IP+ I + G ++G G+NVR +++ +D A IL +G +G Y
Sbjct: 177 NYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVRRILDRGRIGRTY 236
Query: 249 NVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKL-TSLGWS-ERT 306
+ ++ ER + V + + +L DP+ V +R +D RY +D L L W+ + T
Sbjct: 237 LISSEGERDNLTVLRTLLRLMDRDPD-DFDHVTDRVGHDLRYAIDPSTLYDELCWAPKHT 295
Query: 307 IWEEGLRKTIEWYTQNPDWW 326
+EEGLR TI+WY N WW
Sbjct: 296 DFEEGLRTTIDWYRDNESWW 315
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 458 IRTNVAGTLTLADVCRDHGILMMNYATGCIFEYDAAHPEGSGIGYKEEDTPNFTGSFYSK 517
+ TNV GT T+ + R HG+ + + +T ++ E E TP S YS
Sbjct: 94 LHTNVIGTFTILEAVRRHGVRLHHISTDEVY----GDLELDDRARFTESTPYNPSSPYSA 149
Query: 518 TKAMVEELLKEYDNVCTLRVRMPISSDLNN 547
TKA + L++ + V + VR IS+ NN
Sbjct: 150 TKAGADMLVRAW--VRSYGVRATISNCSNN 177
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 181/320 (56%), Gaps = 9/320 (2%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
+L+TG AGFI ++ + +R I VLD L Y + ++L P + + V+GDI
Sbjct: 3 LLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAP--VADRIRLVQGDITD 60
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
A LV L + ES D ++HFAA+THVDN+ + F +N+ GT+ +LEA + R
Sbjct: 61 AALVGDL-VAES-DAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVRRHNV--RLH 116
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
HVSTDEVYG+ + D +E + P++PYS+TKA A++LV A+ RSYG+ + +N
Sbjct: 117 HVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRAWVRSYGVRATISNCSN 176
Query: 189 VYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKGEVGHVY 248
YGP Q EK IP+ I + G ++G G+NVR +++ +D A IL G +G Y
Sbjct: 177 NYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVWRILTDGTIGRTY 236
Query: 249 NVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS-LGWS-ERT 306
+G + ER + V + I KL DP+ V +R +D RY +D L LGW+ + T
Sbjct: 237 LIGAECERNNLTVMRTILKLMGRDPD-DFDHVTDRAGHDLRYAIDPSTLQDELGWAPKHT 295
Query: 307 IWEEGLRKTIEWYTQNPDWW 326
+E GL TI+WY N WW
Sbjct: 296 DFEAGLTDTIDWYRANESWW 315
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 17/331 (5%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
KNI++TG AGFI S+ + + N+P+ + VLDKL Y N NL + V GDI
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANL-EEILGDRVELVVGDI 63
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
A ++LV+ L D I+H+AA++H DNS + F N GT++LLEA + R
Sbjct: 64 ADSELVDKL--AAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDI--R 119
Query: 127 FIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSY 177
F HVSTDEVYG+ + + G+ E ++ P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 178 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFEC 237
G+ + +N YGP Q EK IP+ I + G+ ++G+G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 238 ILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKL 297
IL KG +G Y +G E+ +V + I + S P+ + V +R +D RY +D KL
Sbjct: 240 ILTKGRIGETYLIGADGEKNNKEVLELILEKMSQ-PKNAYDHVTDRAGHDLRYAIDSTKL 298
Query: 298 -TSLGWSER-TIWEEGLRKTIEWYTQNPDWW 326
LGW + T +EEGL TI+WYT++ DWW
Sbjct: 299 REELGWKPQFTNFEEGLEDTIKWYTEHEDWW 329
>sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L780 PE=4 SV=1
Length = 289
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 171/290 (58%), Gaps = 12/290 (4%)
Query: 384 MKFLIYGRTGWIGGLLGKLCEKEGIPFEYGKGRLEDCSSLIADVQSVKPTHVFNAAGVT- 442
MK+LI+G GWIG ++ K+ E++G + R +D S++ ++ +KP V + G T
Sbjct: 1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60
Query: 443 --GRPNVDWCESHK--TDTIRTNVAGTLTLADVCRDHGILMMNYATGCIFEYDAAHPEGS 498
G +D+ E + ++ N+ G L LA +C+ + I + TGCIFE +
Sbjct: 61 GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFE-GQNNFSAD 119
Query: 499 GIGYKEEDTPNFTGSFYSKTKAMVEELLKEYDN-VCTLRVRMPISSDLNNPRNFITKISR 557
G+ E D PNF GS YS K + L+ +DN V LR+RMPI+ + NPR+FITKI
Sbjct: 120 EKGFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILS 178
Query: 558 YNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKW 617
Y+++ +IPNSMT+LD+++P+ I+MA+ G +NFTNPG+VSHNEIL + + P W
Sbjct: 179 YSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTW 238
Query: 618 VNFTLEEQAKVIVAPRSNNEMDASKLKKEFPE----LLSIKDSLIKYVFE 663
N + E+Q ++ A RSNN ++ KL+ +P+ L I++ + K F+
Sbjct: 239 ENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL----DYCSNLKNLIPSKASSNFKFVK 63
IL+TGAAGFI SH+C L+++ ++ ++ +D + LKNL F F+K
Sbjct: 2 KILVTGAAGFIGSHLCEELLKD-KKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 64 GDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKVTG 122
++ +ADL + L E +D I H AA V +S+GN F + +NI LLEAC+
Sbjct: 61 ENLLTADLASLL---EGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EH 116
Query: 123 QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 182
I+ F+ ST VYGE E + L P +PY TK E L Y +S+G+P++
Sbjct: 117 SIQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIV 172
Query: 183 TTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R VYGP Q P+ + I ++ PL I GDG R + Y D + +L K
Sbjct: 173 ILRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 243 E-VGHVYNVGTKKERRVIDVAKDI 265
+G N+G + V+ V I
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLI 256
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 17/328 (5%)
Query: 1 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFK 60
M+ + KN+ +TG G + S++ LI +V D + NL +
Sbjct: 1 MSFWKNKNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQ----SNLYQGEHIKKMN 56
Query: 61 FVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV 120
V+G + ++ L IDT+ H AAQ V + N + NI GT +LEAC+
Sbjct: 57 IVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRK 116
Query: 121 TGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 180
I+R I S+D+ YG+ + + E L +PY +K+ A+++ Y +YGLP
Sbjct: 117 HPLIKRVIVASSDKAYGDQEN---LPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLP 173
Query: 181 VITTRGNNVYGPNQFP-EKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECIL 239
V TR N+YG ++IP+ I L + G I DG+ VR Y Y ED +A+ +
Sbjct: 174 VCITRCGNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLA 233
Query: 240 HKGE----VGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFND--QRYFLD 293
K E G +N + + V+++ + I K M+ K V N+ N+ +Y
Sbjct: 234 EKMEENNLAGEAFNFSNEIQLTVLELVEKILK--KMNSNLKPK-VLNQGSNEIKHQYLSA 290
Query: 294 DQKLTSLGWSERTIWEEGLRKTIEWYTQ 321
++ L W+ +EGL KTIEWYT+
Sbjct: 291 EKARKLLNWTPAYTIDEGLEKTIEWYTE 318
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 155/323 (47%), Gaps = 31/323 (9%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AGFI SH+ ++LI N Y +++LD L + KN I KA +FV DI
Sbjct: 2 ILVTGGAGFIGSHIVDKLIEN--NYDVIILDNL--TTGNKNNINPKA----EFVNADIRD 53
Query: 69 ADL---VNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
DL +NF + ++ ++H AAQ +V NS N N+ GT +LE + +
Sbjct: 54 KDLDEKINF----KDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDK 109
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
S VYGE + V NH + P +PY +K E + Y R YG+ R
Sbjct: 110 IVFASSGGAVYGEPNYLPVDENHPIN---PLSPYGLSKYVGEEYIKLYNRLYGIEYAILR 166
Query: 186 GNNVYGPNQFPE---KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH-K 241
+NVYG Q P+ +I FI ++ I GDG+ R ++Y DVA+A L+ K
Sbjct: 167 YSNVYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWK 226
Query: 242 GEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQ--RYFLDDQKLTS 299
E + N+GT KE V ++ I E + ++P + R +LD +K S
Sbjct: 227 NE---IVNIGTGKETSVNELFDIIKHEIGFRGEA----IYDKPREGEVYRIYLDIKKAES 279
Query: 300 LGWSERTIWEEGLRKTIEWYTQN 322
LGW +EG+++ + W N
Sbjct: 280 LGWKPEIDLKEGIKRVVNWMKNN 302
>sp|Q9SUN3|ARAE3_ARATH Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana
GN=At4g20460 PE=2 SV=3
Length = 411
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 157/350 (44%), Gaps = 41/350 (11%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD-----YCSNLKNLIPSKASSNFKFV 62
++L+TG AG+I SH RL+++ Y++ ++D L L+ L P +F+
Sbjct: 71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPG--RLQFI 126
Query: 63 KGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
D+ A V+ + + D +MHFAA +V S + ++ N T V+LEA
Sbjct: 127 YADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAV-ARH 185
Query: 123 QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 182
++++ I+ ST YGE D+ +V E + +P NPY K AE +++ + ++ + V+
Sbjct: 186 KVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVM 242
Query: 183 TTRGNNVYG------------PNQFPEKLIPKFILLAMRGLPLPIH--------GDGSNV 222
R NV G P I A RG+ + GDG+ V
Sbjct: 243 ILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCV 302
Query: 223 RSYLYCEDVAEAFECILHKGE---VGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKF 279
R Y+ D+ +A L K + VG +YNVGT K R V + + K +D + F
Sbjct: 303 RDYIDVTDLVDAHVKALEKAKPRNVG-IYNVGTGKGRSVKEFVEACKKATGVD--IKVDF 359
Query: 280 VENRPFNDQRYFLDDQK-LTSLGWSER-TIWEEGLRKTIEWYTQNPDWWG 327
+ RP + + D K L L WS R T +E L +W +P +
Sbjct: 360 LPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYA 409
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 153/325 (47%), Gaps = 12/325 (3%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSN-----LKNLIPSKASSNFKF 61
KNIL+TG+AGFI H+ L+ NY + K++ +D L+ N +N I K N+ F
Sbjct: 4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEIL-KNYENYTF 62
Query: 62 VKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
+K D + D + L + ID I+H AQ V S N + + K+N GT + E +
Sbjct: 63 IKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFAR-R 121
Query: 122 GQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
I + ++ S+ VYG + + + P + Y++TK E++ Y YG+ +
Sbjct: 122 FDIEKVVYASSSSVYGGNRKIPFSEDDRVDK--PISLYASTKRSNELMAHVYHHLYGIKM 179
Query: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHK 241
I R VYG P+ KF + G + ++ G+ R + Y DV + + K
Sbjct: 180 IGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKK 239
Query: 242 GEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS-L 300
++N+G K +++ + I K ++ + KF+ + + R + D K L
Sbjct: 240 DFDYEIFNLGNSKPVKLMYFIELIEKY--LNKKAKKKFLPMQDGDVLRTYADLSKSEKLL 297
Query: 301 GWSERTIWEEGLRKTIEWYTQNPDW 325
G+ + EEGL++ W+ +N DW
Sbjct: 298 GYKPKVTIEEGLKRFCNWFLENKDW 322
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 196
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN-S 315
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 316 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL K I ++ + ++ + +P P+ + GR
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPARVKKGR 416
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 196
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 317 -VSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL K I ++ + ++ + +P P+ + GR
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPARIKKGR 416
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 196
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 317 -VSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL K I ++ + ++ + +P P+ + GR
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPARVKKGR 416
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 196
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN-S 315
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E +++ A+ I L E I+F+ + Q+ D +K LG
Sbjct: 316 NVSSPVNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL K I ++ + ++ + +P P+ + GR
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPARIKKGR 416
>sp|Q8H0B6|ARAE2_ORYSJ Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp.
japonica GN=UEL-2 PE=2 SV=1
Length = 391
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 41/350 (11%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLD-----YCSNLKNLIPSKASSNFKFV 62
++L+TG AG+I SH RL+R+ Y++ ++D L L+ L P +F+
Sbjct: 51 HVLVTGGAGYIGSHATLRLLRD--NYRVTIVDNLSRGNMGAVRVLQRLFPEPG--RLQFI 106
Query: 63 KGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
D+ A VN + + D +MHFAA +V S + N T +LEA
Sbjct: 107 YADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAY- 165
Query: 123 QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 182
++ I+ ST YGE D + EA+ P NPY K AE +++ + + + V+
Sbjct: 166 NVKTLIYSSTCATYGEPDTMPIT---EATPQNPINPYGKAKKMAEDIILDFSKRSEMAVM 222
Query: 183 TTRGNNVYGPN---QFPEKLIPKF----------------IL--LAMRGLPLPIHGDGSN 221
R NV G + + E P+ I+ L +RG P DG+
Sbjct: 223 ILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPT-ADGTC 281
Query: 222 VRSYLYCEDVAEAFECILHKGEVGHV--YNVGTKKERRVIDVAKDICKLFSMDPETSIKF 279
+R Y+ D+ +A L K + G V YNVGT R V + + CK + + F
Sbjct: 282 IRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFV-EACK-SATGASIKVSF 339
Query: 280 VENRPFNDQRYFLDDQKL-TSLGWSERTI-WEEGLRKTIEWYTQNPDWWG 327
+ RP + + D K+ L W+ R I E L +W +P+ +G
Sbjct: 340 LTRRPGDYAEVYSDPSKIHDELNWTARYIDLRESLSTAWKWQKAHPNGYG 389
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 87 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 143
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 144 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 194
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 195 LLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 254
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +G +++ FIL A++G L ++G GS R++ Y D+ +++
Sbjct: 255 RIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSN 314
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
+ N+G +E +++ A+ I L + + I+F+ + QR D +K LG
Sbjct: 315 -ISSPVNLGNPEEHTILEFAQLIKSLVA--SRSHIQFLPEAQDDPQRRRPDIRKAKLLLG 371
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL KTI+++++ + + +P P+ M GR
Sbjct: 372 WEPVVPLEEGLNKTIQYFSRELE--HQANNQYIPKPKAARMKKGR 414
>sp|Q9CNY5|GALE_PASMU UDP-glucose 4-epimerase OS=Pasteurella multocida (strain Pm70)
GN=galE PE=3 SV=1
Length = 338
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 156/350 (44%), Gaps = 44/350 (12%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYC-SNLKNL--IPSKASSNFKFVKGD 65
IL+TG AG+I SH L+ + +VVLD L C S+ K+L + KF +GD
Sbjct: 3 ILVTGGAGYIGSHTVVELLNANKD--VVVLDNL--CNSSPKSLERVAQITGKQVKFYQGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I L+ + I +++HFA V S E+ NN+ G+ VL++ K G +
Sbjct: 59 ILDTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAG-VW 117
Query: 126 RFIHVSTDEVYGETD-----EDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY-GL 179
F+ S+ VYG+ + E VG TNPY +K E ++ ++
Sbjct: 118 NFVFSSSATVYGDPEIIPITESCKVGG-------TTNPYGTSKFMVEQILKDIAKATPEF 170
Query: 180 PVITTRGNNVYG----------PNQFPEKLIPKFILLAMRGLP-LPIHG------DGSNV 222
+ R N G PN P L+P +A+ LP L + G DG+ V
Sbjct: 171 SITILRYFNPVGAHESGLIGEDPNGIPNNLLPYISQVAIGKLPQLSVFGSDYETHDGTGV 230
Query: 223 RSYLYCEDVAEAFECIL--HKGEVG-HVYNVGTKKERRVIDVAKDICKLFSMDPETSIKF 279
R Y++ D+A L H+G+ G H+YN+GT V+D+ K K+ D + K
Sbjct: 231 RDYIHVVDLAIGHLKALDRHEGDAGLHIYNLGTGSGYSVLDMVKAFEKV--NDIKIPYKL 288
Query: 280 VENRPFNDQRYFLDDQ-KLTSLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
V+ RP + + D T L W+ E+ ++ T W +NP + D
Sbjct: 289 VDRRPGDIATCYSDPSLAKTELNWTAARGLEQMMKDTWHWQKKNPKGYRD 338
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 148/320 (46%), Gaps = 25/320 (7%)
Query: 10 LITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASA 69
L+TGAAGFI S + +RL+ + + +V LD L +NL ++ S F+FVK DI A
Sbjct: 4 LVTGAAGFIGSTLVDRLLAD--GHGVVGLDDLS-SGRAENLHSAENSDKFEFVKADIVDA 60
Query: 70 DLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIH 129
DL LL + I H AAQ V S + N+ GT L EA ++ G +R+ +H
Sbjct: 61 DLTG-LLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAG-VRKVVH 118
Query: 130 VSTD-EVYGE-----TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
S+ VYG T ED V P +PY+A K E+ + Y Y L
Sbjct: 119 TSSGGSVYGTPPAYPTSEDMPVN--------PASPYAAGKVAGEVYLNMYRNLYDLDCSH 170
Query: 184 TRGNNVYGPNQFPE---KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILH 240
NVYGP Q P ++ F + G I GDGS+ R Y++ +DV +AF
Sbjct: 171 IAPANVYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAGG 230
Query: 241 KGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLTS- 299
G +NVGT E ++ I E +F R + +R LD+ +
Sbjct: 231 PAGGGQRFNVGTGVETSTRELHTAIAGAVGAPDEP--EFHPPRLGDLRRSRLDNTRAREV 288
Query: 300 LGWSERTIWEEGLRKTIEWY 319
LGW + EG+ KT+E++
Sbjct: 289 LGWQPQVALAEGIAKTVEFF 308
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 157/346 (45%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +++LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + +K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 151/345 (43%), Gaps = 22/345 (6%)
Query: 7 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDI 66
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ + D+
Sbjct: 90 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 146
Query: 67 ASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
+ +D I H A+ N N + K N GT +L K G R
Sbjct: 147 VEPLYI-------EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--R 197
Query: 127 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
+ ST EVYG+ + + + + P Y K AE + AY + G+ V
Sbjct: 198 LLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 257
Query: 185 RGNNVYGPNQFPE--KLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFECILHKG 242
R N +GP +++ FIL A++G L ++G G R++ Y D+ +++
Sbjct: 258 RIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMN-S 316
Query: 243 EVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQRYFLDDQKLT-SLG 301
V N+G +E ++ A+ I +L E I F+ + QR D +K LG
Sbjct: 317 NVSSPVNLGNPQEHSIVQFARLIKQLVGSGGE--ISFLSEAQDDPQRRKPDIRKAKLLLG 374
Query: 302 WSERTIWEEGLRKTIEWYTQNPDWWGDVSGALLPHPRMLMMPGGR 346
W EEGL KTI ++ + + + +P P+ + GR
Sbjct: 375 WEPVVPLEEGLNKTIHYFRKELEH--QANNQYIPKPKPARVKKGR 417
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +V+LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
I S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPEWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L + G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLADKSGV-HIYNLGAGVGSSVLDVVNAFSK--ACGKPINYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 DGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYSD 338
>sp|Q59678|GALE_PASHA UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3
SV=1
Length = 338
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 153/343 (44%), Gaps = 34/343 (9%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLK-NLIPSKASSNFKFVKGDIA 67
IL+TG AG+I SH L+ E IVVLD L S + + + KF +GDI
Sbjct: 3 ILVTGGAGYIGSHTLVELLNENRE--IVVLDNLSNSSEVSLERVKQITGKSVKFYQGDIL 60
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
D++ + I++++HFA V + N + KNN+ G+ VL+E + +
Sbjct: 61 DRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEM-LKANVNTI 119
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY-GLPVITTRG 186
+ S+ VYG+ +V + TNPY +K E ++ +++ L + R
Sbjct: 120 VFSSSATVYGDPQIIPIVESCPVGG--TTNPYGTSKYMVERILEDTVKAFPQLSAVVLRY 177
Query: 187 NNVYG----------PNQFPEKLIPKFILLAMRGLP-LPIHG------DGSNVRSYLYCE 229
N G PN P L+P +A+ LP L + G DG+ VR Y++
Sbjct: 178 FNRVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVFGGDYNTHDGTGVRDYIHVV 237
Query: 230 DVAEAFECIL--HKGEVG-HVYNVGTKKERRVIDVAKDICKLFSMDPETSI--KFVENRP 284
D+A L H+ + G HVYN+GT V+ D+ K F +I K V+ RP
Sbjct: 238 DLALGHLKALDKHQNDAGFHVYNLGTGTGYSVL----DMVKAFEAANGITIPYKVVDRRP 293
Query: 285 FNDQRYFLDDQK-LTSLGWSERTIWEEGLRKTIEWYTQNPDWW 326
+ + QK L LGW E+ ++ T W NP+ +
Sbjct: 294 GDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPNGY 336
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIP---SKASSNFKFVKGD 65
+L+TG +G+I SH C +L++N + +V+LD L C++ ++++P + FV+GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 66 IASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
I + L+ +L +IDT++HFA V S E+ NN+ GT L+ A + ++
Sbjct: 59 IRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMRAA-NVK 117
Query: 126 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 174
I S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPEWSIALL 175
Query: 175 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-RGLPLPIHG------DGSNVRSYLY 227
R + G+ P P L+P +A+ R L + G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIH 235
Query: 228 CEDVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENR 283
D+A+ A E + K V H+YN+G V+DV K + + F R
Sbjct: 236 VMDLADGHVVAMEKLADKSGV-HIYNLGAGVGSSVLDVVNAFSK--ACGKPINYHFAPRR 292
Query: 284 PFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
+ Y+ D K L W +E + T W +++P + D
Sbjct: 293 DGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|Q8H0B2|ARAE3_ORYSJ Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp.
japonica GN=UEL-3 PE=2 SV=1
Length = 406
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 159/354 (44%), Gaps = 48/354 (13%)
Query: 8 NILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDY-----CSNLKNLIPSKASSNFKFV 62
++L+TG AG+I SH RL+++ Y++ ++D L L+ L P +F+
Sbjct: 65 HVLVTGGAGYIGSHASLRLLKD--NYRVTIVDNLSRGNMGAVKVLQELFPQPG--RLQFI 120
Query: 63 KGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122
D+ VN + + D +MHFAA +V S + N T ++LEA G
Sbjct: 121 YADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHG 180
Query: 123 QIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAY--GRSYGLP 180
++ I+ ST YGE ++ +V E ++ LP NPY K AE +++ + GR +
Sbjct: 181 -VKTLIYSSTCATYGEPEKMPIV---ETTRQLPINPYGKAKKMAEDIILDFTKGRK-DMA 235
Query: 181 VITTRGNNVYGPNQFPEKLI---PKFIL--------------------LAMRGLPLPIHG 217
V+ R NV G + PE + P+ L L ++G P
Sbjct: 236 VMILRYFNVIGSD--PEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTT- 292
Query: 218 DGSNVRSYLYCEDVAEAFECILHKGEVGHV--YNVGTKKERRVIDVAKDICKLFSMDPET 275
DG+ +R Y+ D+ +A L+K E V YNVGT + R V + D CK +
Sbjct: 293 DGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEFV-DACKK-ATGVNI 350
Query: 276 SIKFVENRPFNDQRYFLDDQKL-TSLGWSER-TIWEEGLRKTIEWYTQNPDWWG 327
I+++ RP + + D K+ T L W+ + T +E L W +P +G
Sbjct: 351 KIEYLSRRPGDYAEVYSDPTKINTELNWTAQYTDLKESLSVAWRWQKSHPRGYG 404
>sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3
SV=1
Length = 334
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 153/337 (45%), Gaps = 38/337 (11%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIAS 68
IL+TG AG+I SH L+ + ++VLD L + A S+ F GDI
Sbjct: 3 ILVTGGAGYIGSHTVLFLLEQGEQ--VIVLDNLQKGH-------AGALSDVTFYHGDIRD 53
Query: 69 ADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
L++ + T SIDT++HFAA + V S E+ +NN+ GTH LL+ + +++ +
Sbjct: 54 DQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKM-LEHDVKKIV 112
Query: 129 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 188
ST YGE + + E+ +PTNPY TK E + +YGL + R N
Sbjct: 113 FSSTAATYGEPVQIPI---QESDPTIPTNPYGETKLAIEKMFHWCQEAYGLQYVCLRYFN 169
Query: 189 VYG--PN------QFPEK-LIPKFILLAM-RGLPLPIHG------DGSNVRSYLYCEDVA 232
G PN PE LIP + +A+ + + I G DGS +R Y++ D+A
Sbjct: 170 AAGADPNGRIGEDHSPESHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLA 229
Query: 233 EAF----ECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPFNDQ 288
A E + G+ G +N+G K V +V ++C+ + P + R +
Sbjct: 230 NAHYLACEHLRKDGQSG-SFNLGNGKGFSVKEVI-EVCRQVTGHP-IPAEIAPRRSGDPA 286
Query: 289 RYFLDDQKL-TSLGWSER-TIWEEGLRKTIEWYTQNP 323
+K T LGW + E + W+ ++P
Sbjct: 287 SLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHP 323
>sp|Q9F7D4|GALE_YERPE UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1
Length = 338
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 144/349 (41%), Gaps = 42/349 (12%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKL-DYCSNLKNLIPSKASSNFKFVKGDIA 67
+L+TG +G+I SH C +LI YK V+LD L + S++ I S + GDI
Sbjct: 3 VLVTGGSGYIGSHTCVQLIEA--GYKPVILDNLCNSKSSVLARIHSLTGYTPELYAGDIR 60
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
L++ + I ++HFA V S E+ NN++GT VLLEA + Q++
Sbjct: 61 DRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMRAA-QVKNL 119
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAE--------------MLVMAY 173
I S+ VYG+ + V + P++PY +K E M ++ Y
Sbjct: 120 IFSSSATVYGDQPQIPYVESFPTGS--PSSPYGRSKLMVEQILQDVQLADPQWNMTILRY 177
Query: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM----------RGLPLPIHGDGSNVR 223
G G + P P L+P +A+ G P P DG+ VR
Sbjct: 178 FNPVGAHPSGLMGED---PQGIPNNLMPFIAQVAVGRRESLAIFGNGYPTP---DGTGVR 231
Query: 224 SYLYCEDVAE---AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFV 280
Y++ D+A+ A LH H++N+G V+ V K + + F
Sbjct: 232 DYIHVVDLADGHVAAMKTLHGKPGVHIFNLGAGVGHSVLQVVAAFSK--ACGKPLAYHFA 289
Query: 281 ENRPFNDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQNPDWWGD 328
R + Y+ D K LGW +E T W ++NP + D
Sbjct: 290 PRREGDLPAYWADATKAAEQLGWRVSRSLDEMAADTWHWQSKNPQGYPD 338
>sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE
PE=3 SV=1
Length = 339
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 147/338 (43%), Gaps = 33/338 (9%)
Query: 9 ILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCS-NLKNLIPSKASSNFKFVKGDIA 67
IL+TG AG+I SH C L+ + Y+IVVLD L S N + + F + D+
Sbjct: 3 ILVTGGAGYIGSHTCVELLNS--GYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLL 60
Query: 68 SADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
+ V+ + I+ ++HFA V S ++ NN+ GT +L EA + G +++
Sbjct: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYG-VKKI 119
Query: 128 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM-AYGRSYGLPVITTRG 186
+ S+ VYG + + E L TNPY TK E ++ + V R
Sbjct: 120 VFSSSATVYGVPETSPIT---EDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRY 176
Query: 187 NNVYG----------PNQFPEKLIPKFILLAMRGL-PLPIHG------DGSNVRSYLYCE 229
N +G PN P L+P +A+ L L + G DG+ VR Y++
Sbjct: 177 FNPFGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVV 236
Query: 230 DVAE----AFECILHKGEVGHVYNVGTKKERRVIDVAKDICKLFSMDPETSIKFVENRPF 285
D+AE A E +L+ YN+GT V+++ K K+ E +F + RP
Sbjct: 237 DLAEGHVKALEKVLNS-TGADAYNLGTGTGYSVLEMVKAFEKVSG--KEVPYRFADRRPG 293
Query: 286 NDQRYFLDDQKLT-SLGWSERTIWEEGLRKTIEWYTQN 322
+ F D K LGW + EE + W + N
Sbjct: 294 DIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQSSN 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,515,881
Number of Sequences: 539616
Number of extensions: 11302258
Number of successful extensions: 30058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 29214
Number of HSP's gapped (non-prelim): 677
length of query: 668
length of database: 191,569,459
effective HSP length: 124
effective length of query: 544
effective length of database: 124,657,075
effective search space: 67813448800
effective search space used: 67813448800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)