Query 005954
Match_columns 667
No_of_seqs 161 out of 684
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 16:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 4E-108 8E-113 878.6 38.6 365 285-652 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.033 7.1E-07 57.2 17.5 193 368-603 33-227 (247)
3 TIGR00740 methyltransferase, p 96.1 0.27 5.9E-06 49.9 16.1 106 393-518 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 96.0 0.74 1.6E-05 46.1 18.6 113 383-518 35-149 (231)
5 PF13489 Methyltransf_23: Meth 94.8 0.62 1.4E-05 43.0 12.7 98 391-523 20-119 (161)
6 PLN02233 ubiquinone biosynthes 94.7 3.7 8E-05 42.8 19.3 121 382-521 62-184 (261)
7 PRK06202 hypothetical protein; 94.7 0.75 1.6E-05 46.5 13.8 113 389-521 56-168 (232)
8 TIGR01934 MenG_MenH_UbiE ubiqu 93.7 5.9 0.00013 38.7 17.6 118 381-522 27-146 (223)
9 TIGR02716 C20_methyl_CrtF C-20 93.7 1.1 2.3E-05 47.4 13.1 119 382-523 138-258 (306)
10 PRK08317 hypothetical protein; 91.9 9 0.00019 37.6 16.0 53 385-443 11-63 (241)
11 PF13649 Methyltransf_25: Meth 91.3 0.71 1.5E-05 40.4 6.8 97 397-512 1-99 (101)
12 PRK14103 trans-aconitate 2-met 91.2 7.5 0.00016 39.9 15.2 108 383-521 19-127 (255)
13 PLN02396 hexaprenyldihydroxybe 90.9 4.9 0.00011 43.7 14.0 100 394-519 132-234 (322)
14 PRK00216 ubiE ubiquinone/menaq 90.8 15 0.00033 36.2 16.5 55 385-445 43-97 (239)
15 TIGR03438 probable methyltrans 90.4 2.8 6E-05 44.6 11.5 112 395-521 65-178 (301)
16 PF12847 Methyltransf_18: Meth 90.3 0.97 2.1E-05 39.6 6.7 104 396-519 4-110 (112)
17 TIGR02072 BioC biotin biosynth 90.1 12 0.00027 36.7 15.2 100 393-519 34-134 (240)
18 PF13847 Methyltransf_31: Meth 90.1 2 4.3E-05 40.4 9.2 108 392-521 2-112 (152)
19 PF01209 Ubie_methyltran: ubiE 89.2 1.6 3.4E-05 45.2 8.3 116 384-521 38-155 (233)
20 PTZ00098 phosphoethanolamine N 89.1 12 0.00026 39.0 14.8 58 380-445 39-96 (263)
21 COG2226 UbiE Methylase involve 88.2 20 0.00044 37.6 15.6 188 372-603 29-221 (238)
22 PLN02585 magnesium protoporphy 86.5 14 0.00029 40.2 13.7 104 393-519 144-249 (315)
23 smart00138 MeTrc Methyltransfe 85.5 1.4 3.1E-05 46.1 5.6 53 391-443 97-151 (264)
24 PRK05785 hypothetical protein; 84.6 19 0.00042 36.7 13.1 94 394-520 52-146 (226)
25 PLN02336 phosphoethanolamine N 83.4 14 0.0003 41.6 12.5 137 383-546 27-172 (475)
26 TIGR03587 Pse_Me-ase pseudamin 82.9 10 0.00022 38.3 10.1 100 396-522 46-145 (204)
27 PRK06922 hypothetical protein; 81.9 26 0.00056 42.0 14.3 110 395-520 420-538 (677)
28 PRK11036 putative S-adenosyl-L 81.5 14 0.0003 38.1 10.8 112 383-518 35-147 (255)
29 PRK11873 arsM arsenite S-adeno 81.0 44 0.00096 34.5 14.3 100 395-519 79-183 (272)
30 PLN02336 phosphoethanolamine N 80.3 21 0.00046 40.0 12.6 113 382-519 255-368 (475)
31 PRK05134 bifunctional 3-demeth 80.2 58 0.0013 32.7 14.5 58 388-458 43-100 (233)
32 PRK01683 trans-aconitate 2-met 78.5 20 0.00044 36.5 10.8 111 381-520 19-130 (258)
33 PRK11207 tellurite resistance 78.1 24 0.00052 35.1 10.9 111 381-516 18-130 (197)
34 PF03291 Pox_MCEL: mRNA cappin 78.0 13 0.00027 40.8 9.6 119 393-522 62-189 (331)
35 PF08241 Methyltransf_11: Meth 77.5 4.1 8.8E-05 33.9 4.5 93 398-517 1-94 (95)
36 PRK12335 tellurite resistance 76.9 19 0.00041 38.0 10.3 108 383-515 110-218 (287)
37 TIGR00477 tehB tellurite resis 76.6 19 0.00041 35.7 9.7 111 380-515 17-128 (195)
38 TIGR02081 metW methionine bios 76.2 33 0.00072 33.7 11.2 47 384-440 6-52 (194)
39 TIGR03439 methyl_EasF probable 76.0 48 0.001 36.2 13.3 151 384-546 69-234 (319)
40 PF09243 Rsm22: Mitochondrial 74.1 25 0.00053 37.2 10.3 138 377-537 13-156 (274)
41 TIGR02021 BchM-ChlM magnesium 73.2 28 0.0006 34.8 9.9 60 377-445 37-98 (219)
42 PF02353 CMAS: Mycolic acid cy 70.2 27 0.00059 37.1 9.5 113 383-519 52-165 (273)
43 PRK10909 rsmD 16S rRNA m(2)G96 69.4 69 0.0015 32.5 11.8 105 395-525 55-164 (199)
44 smart00650 rADc Ribosomal RNA 64.8 39 0.00084 32.5 8.7 54 383-445 3-56 (169)
45 PLN02244 tocopherol O-methyltr 64.7 81 0.0018 34.3 12.0 102 393-519 118-223 (340)
46 PRK00274 ksgA 16S ribosomal RN 63.4 38 0.00083 35.5 9.0 67 369-444 13-84 (272)
47 PRK14968 putative methyltransf 63.1 69 0.0015 30.5 10.0 43 394-445 24-66 (188)
48 PRK10258 biotin biosynthesis p 63.0 1.3E+02 0.0028 30.6 12.6 53 382-443 31-83 (251)
49 PRK00107 gidB 16S rRNA methylt 62.6 1.1E+02 0.0025 30.6 11.8 98 394-520 46-145 (187)
50 TIGR00452 methyltransferase, p 60.4 85 0.0018 34.2 11.1 112 384-519 112-224 (314)
51 PRK15001 SAM-dependent 23S rib 60.1 39 0.00085 37.8 8.7 108 396-520 231-340 (378)
52 PRK00121 trmB tRNA (guanine-N( 59.9 96 0.0021 31.0 10.7 112 393-518 40-154 (202)
53 TIGR01983 UbiG ubiquinone bios 59.6 1.9E+02 0.004 28.6 15.2 101 393-518 45-147 (224)
54 PF13679 Methyltransf_32: Meth 59.3 22 0.00047 33.5 5.7 52 389-443 21-72 (141)
55 COG4106 Tam Trans-aconitate me 58.9 34 0.00073 36.2 7.4 111 388-527 25-136 (257)
56 PRK15068 tRNA mo(5)U34 methylt 58.5 91 0.002 33.8 11.0 111 385-519 114-225 (322)
57 PF08242 Methyltransf_12: Meth 58.5 4.5 9.7E-05 35.0 0.9 42 398-446 1-42 (99)
58 COG2230 Cfa Cyclopropane fatty 58.5 72 0.0016 34.6 10.0 108 382-513 61-169 (283)
59 TIGR00537 hemK_rel_arch HemK-r 58.2 1.6E+02 0.0035 28.4 11.8 49 396-457 22-70 (179)
60 smart00828 PKS_MT Methyltransf 57.1 66 0.0014 32.0 9.0 99 396-517 2-101 (224)
61 PLN02490 MPBQ/MSBQ methyltrans 56.9 2E+02 0.0044 31.8 13.4 100 393-518 113-213 (340)
62 PRK11705 cyclopropane fatty ac 56.4 99 0.0021 34.4 11.0 54 383-444 157-210 (383)
63 PRK09489 rsmC 16S ribosomal RN 55.3 1.1E+02 0.0025 33.5 11.2 118 383-521 186-304 (342)
64 TIGR00138 gidB 16S rRNA methyl 53.9 1.9E+02 0.0042 28.6 11.6 97 395-520 44-142 (181)
65 PRK07580 Mg-protoporphyrin IX 50.6 84 0.0018 31.2 8.6 45 392-445 62-106 (230)
66 COG2227 UbiG 2-polyprenyl-3-me 49.5 65 0.0014 34.2 7.7 103 393-521 59-163 (243)
67 TIGR00091 tRNA (guanine-N(7)-) 49.3 1E+02 0.0022 30.6 8.8 116 394-521 17-133 (194)
68 TIGR02085 meth_trns_rumB 23S r 48.0 2E+02 0.0043 31.9 11.7 99 396-521 236-335 (374)
69 PRK03522 rumB 23S rRNA methylu 47.3 2.2E+02 0.0048 30.5 11.7 101 395-522 175-276 (315)
70 PF00891 Methyltransf_2: O-met 46.7 1.4E+02 0.0029 30.3 9.5 110 383-523 90-203 (241)
71 PF03848 TehB: Tellurite resis 45.9 2.7E+02 0.0059 28.4 11.4 111 383-518 20-131 (192)
72 TIGR02469 CbiT precorrin-6Y C5 45.1 67 0.0015 28.1 6.2 44 396-446 22-65 (124)
73 PRK04148 hypothetical protein; 44.7 70 0.0015 30.9 6.6 69 385-461 8-111 (134)
74 PRK11088 rrmA 23S rRNA methylt 38.6 1.1E+02 0.0023 32.0 7.5 80 358-443 52-131 (272)
75 TIGR03534 RF_mod_PrmC protein- 38.4 2.7E+02 0.0059 27.9 10.2 51 393-454 87-137 (251)
76 TIGR01626 ytfJ_HI0045 conserve 36.8 1E+02 0.0022 31.3 6.7 111 393-510 59-182 (184)
77 TIGR00755 ksgA dimethyladenosi 35.8 2.1E+02 0.0046 29.5 9.1 52 384-444 20-71 (253)
78 cd05296 GH4_P_beta_glucosidase 33.3 2.3E+02 0.0049 32.2 9.4 53 409-462 14-68 (419)
79 PLN02232 ubiquinone biosynthes 33.1 4.4E+02 0.0096 25.3 10.3 82 428-522 1-84 (160)
80 PRK07402 precorrin-6B methylas 32.0 1.2E+02 0.0026 29.8 6.3 62 378-446 25-86 (196)
81 PF07521 RMMBL: RNA-metabolisi 30.8 91 0.002 24.1 4.1 37 478-518 1-38 (43)
82 cd05197 GH4_glycoside_hydrolas 30.4 2.3E+02 0.005 32.2 8.9 54 409-462 14-67 (425)
83 PRK13255 thiopurine S-methyltr 30.1 6.2E+02 0.013 25.9 11.4 37 394-439 38-74 (218)
84 COG2242 CobL Precorrin-6B meth 29.8 99 0.0021 31.7 5.3 53 386-448 27-82 (187)
85 PTZ00338 dimethyladenosine tra 29.8 1.7E+02 0.0037 31.5 7.5 53 385-446 28-80 (294)
86 PRK13168 rumA 23S rRNA m(5)U19 29.7 2.8E+02 0.0061 31.3 9.5 110 386-521 290-401 (443)
87 PRK14896 ksgA 16S ribosomal RN 28.9 2E+02 0.0043 30.0 7.5 58 379-445 11-72 (258)
88 KOG4300 Predicted methyltransf 28.2 4.9E+02 0.011 27.7 10.0 120 390-534 73-195 (252)
89 PF02056 Glyco_hydro_4: Family 28.1 1.9E+02 0.0042 29.3 7.0 58 405-462 9-66 (183)
90 PF13659 Methyltransf_26: Meth 27.9 1.7E+02 0.0037 25.6 6.0 111 395-518 2-113 (117)
91 TIGR00536 hemK_fam HemK family 27.8 1.4E+02 0.003 31.6 6.2 49 395-454 116-164 (284)
92 PRK13944 protein-L-isoaspartat 26.9 1.3E+02 0.0029 30.0 5.7 56 384-445 63-118 (205)
93 PRK09328 N5-glutamine S-adenos 26.5 1.4E+02 0.0031 30.5 6.0 49 390-445 105-153 (275)
94 TIGR00417 speE spermidine synt 26.4 7.6E+02 0.017 25.8 13.1 107 396-519 75-185 (270)
95 PHA03411 putative methyltransf 25.4 1.4E+02 0.0031 32.3 5.9 76 359-442 29-106 (279)
96 TIGR01716 RGG_Cterm transcript 25.3 1.1E+02 0.0024 30.3 4.8 55 285-339 127-182 (220)
97 PLN02446 (5-phosphoribosyl)-5- 24.6 94 0.002 33.3 4.3 27 390-417 55-81 (262)
98 cd05298 GH4_GlvA_pagL_like Gly 24.5 1.5E+02 0.0033 33.8 6.2 55 409-463 14-68 (437)
99 COG1341 Predicted GTPase or GT 24.4 3.2E+02 0.0068 31.2 8.4 80 478-570 173-253 (398)
100 KOG2904 Predicted methyltransf 24.0 1.1E+02 0.0023 33.7 4.5 59 384-453 136-197 (328)
101 PRK08287 cobalt-precorrin-6Y C 23.1 1.8E+02 0.004 28.3 5.7 53 386-445 24-76 (187)
102 PRK14967 putative methyltransf 23.0 7.8E+02 0.017 24.7 12.0 42 395-444 38-79 (223)
103 PRK00312 pcm protein-L-isoaspa 22.5 1.9E+02 0.0042 28.7 5.9 54 385-447 70-123 (212)
104 KOG1165 Casein kinase (serine/ 21.4 53 0.0012 36.9 1.7 13 391-403 164-176 (449)
105 TIGR03840 TMPT_Se_Te thiopurin 21.3 7.3E+02 0.016 25.3 9.8 37 394-439 35-71 (213)
106 PF05175 MTS: Methyltransferas 21.2 1.1E+02 0.0024 29.6 3.7 115 383-517 21-137 (170)
107 PRK00050 16S rRNA m(4)C1402 me 21.2 1.6E+02 0.0035 31.9 5.3 58 383-446 9-66 (296)
108 PRK00517 prmA ribosomal protei 20.8 2.3E+02 0.005 29.2 6.2 60 378-445 102-163 (250)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=3.9e-108 Score=878.64 Aligned_cols=365 Identities=47% Similarity=0.818 Sum_probs=344.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCCCCChhhhHHHHHHHHHHHhhcccCCcccccCCCCCCCc-ccchHHHH
Q 005954 285 LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDR-VDDDSGAA 363 (667)
Q Consensus 285 Lv~LLl~CAeAV~~gd~~~A~~lL~~L~~laSp~Gd~~QRLA~YFaeAL~~RL~~~~p~~~~~~~p~~~~~-~~~e~~~A 363 (667)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+++++.|...++..... ...+...|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998887654443321 24578999
Q ss_pred HHHHHhcCCccchhhhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCC----ChHHHHH
Q 005954 364 LRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGE----SKQELNE 439 (667)
Q Consensus 364 ~~~f~e~sPf~kFAhftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~----s~~~L~e 439 (667)
|+.||++|||+||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+. +.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHHHHHHcCCceEEEEe-ccccccccccccccCCCcEEEEEeccchhhcccCCCC--ChHHHHHHHHHhcCCcEEE
Q 005954 440 TGDRLSGFAEALNLPFEFHPV-VDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNG--GVLRDFLGLIRSTNPTIVL 516 (667)
Q Consensus 440 tG~RL~~fA~slgVpFEF~~V-~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~--~~l~~fL~~IRsL~PkVVV 516 (667)
||+||.+||+++||||||++| ..+||+++.++|++++||+|||||+++|||++.+... .+++.||+.||+|+|+|||
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv 240 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV 240 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE
Confidence 999999999999999999996 6799999999999999999999999999998744321 2456799999999999999
Q ss_pred EeeecCCCCCcchhHHHHHHHHHHHHHHHHhhhhCCCCcHHHHHHHHH-hhhhhhheeeccCCCccccccchhHHHHHHH
Q 005954 517 MAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEM-FAREVRSIVACEGSDRLERHESFENWRRMME 595 (667)
Q Consensus 517 lvEqEadhNsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~-fgrEI~NIVAcEG~dRvERhE~~~qWr~Rm~ 595 (667)
++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|+.+|++ ||+||+|||||||.+|+||||++++|+.||+
T Consensus 241 ~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~ 320 (374)
T PF03514_consen 241 LVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMR 320 (374)
T ss_pred EEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred cCCCeeccCChhHHHHHHHHHhccCCCCcEEEEecCCCCeEEEeeCCceeEEEeecc
Q 005954 596 QGGFRCMGISEREMLQSQMLLKMYSCGNYGVKKQGQDGAALTLSWIDQPLYTVSAWA 652 (667)
Q Consensus 596 rAGF~~vpLS~~a~~QAr~LLk~~~~~gy~v~e~g~D~g~LlLgWKgrpL~svSAWr 652 (667)
+|||+++|||++++.||++|+++|.++||+|+++ +|||+||||++||+++||||
T Consensus 321 ~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~---~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 321 RAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEED---GGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEc---CCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999999999998778999976 79999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.08 E-value=0.033 Score=57.18 Aligned_cols=193 Identities=13% Similarity=0.190 Sum_probs=103.4
Q ss_pred HhcCCccchhhhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHH
Q 005954 368 NQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGF 447 (667)
Q Consensus 368 ~e~sPf~kFAhftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~f 447 (667)
....|.+...|-.++.. +...-. ..-+|+|+|.|.|.--..|.+.+. .|..++|||+.+...++.+.+++.++
T Consensus 33 ~~~~p~y~~~~~~~~~~-~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGML-AERFVQ-PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHH-HHHhCC-CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 35677777777666543 333322 234799999999974333333221 23579999999999998888877543
Q ss_pred HHHcCCceEEEEeccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCc-EEEEeeecCCCC
Q 005954 448 AEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPT-IVLMAEQEAEHN 525 (667)
Q Consensus 448 A~slgVpFEF~~V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~Pk-VVVlvEqEadhN 525 (667)
.. .-.++| +...++++. ....++++ +.+.||++- + .....+|+.| +.|+|. +++++|.=...
T Consensus 106 ~~--~~~v~~--~~~d~~~~~-----~~~~D~vv--~~~~l~~l~-~---~~~~~~l~~i~~~LkpGG~l~l~e~~~~~- 169 (247)
T PRK15451 106 KA--PTPVDV--IEGDIRDIA-----IENASMVV--LNFTLQFLE-P---SERQALLDKIYQGLNPGGALVLSEKFSFE- 169 (247)
T ss_pred CC--CCCeEE--EeCChhhCC-----CCCCCEEe--hhhHHHhCC-H---HHHHHHHHHHHHhcCCCCEEEEEEecCCC-
Confidence 21 113444 233333332 12234444 445677752 2 2345566655 679998 66777743222
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhCCCCcHHHHHHHHHhhhhhhheeeccCCCccccccchhHHHHHHHcCCCeecc
Q 005954 526 SPFLETRVSNSLRYYSALFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMG 603 (667)
Q Consensus 526 sp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~fgrEI~NIVAcEG~dRvERhE~~~qWr~Rm~rAGF~~vp 603 (667)
.+.....+.+..+.|. ....+. ...+++. ....+| +-++++.++...+|++|||..+-
T Consensus 170 ~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~-~~~~~~---------~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 170 DAKVGELLFNMHHDFK-----RANGYS-----ELEISQK-RSMLEN---------VMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred cchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH-HHHHHh---------hcccCCHHHHHHHHHHcCchhHH
Confidence 2223333333222221 111111 1122221 111233 33456778999999999999864
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.06 E-value=0.27 Score=49.86 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=61.7
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWML 472 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L 472 (667)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+...++.+.+++.++. .+..++| +...+.++.
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~--~~~d~~~~~---- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEI--LCNDIRHVE---- 119 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEE--EECChhhCC----
Confidence 34579999999995 4455554422 235899999999988888877775432 1223444 232333332
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEe
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMA 518 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlv 518 (667)
.....+ |-+.+.||++. + .....+|+.+ +.|+|.-++++
T Consensus 120 -~~~~d~--v~~~~~l~~~~-~---~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 120 -IKNASM--VILNFTLQFLP-P---EDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred -CCCCCE--EeeecchhhCC-H---HHHHHHHHHHHHhcCCCeEEEE
Confidence 222333 33555677752 2 1234566665 67899854444
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.99 E-value=0.74 Score=46.07 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=61.6
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEec
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVV 461 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~ 461 (667)
+.++..+.-...-+|+|+|.+.|.-.. .|+.+- +|..++|||+.+...++.+.+++.+ .+++ .+| +.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~~--~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~--~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEAV--GPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVEL--VH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHHh--CCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEE--EE
Confidence 456666654444689999999998333 333321 1246899999998887777766542 3332 232 22
Q ss_pred cccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHH-HHHhcCCcEEEEe
Q 005954 462 DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLG-LIRSTNPTIVLMA 518 (667)
Q Consensus 462 ~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~-~IRsL~PkVVVlv 518 (667)
...+++. +....=+.|+.+ +.+|++ . ....+|+ ..+-|+|.-.+++
T Consensus 103 ~d~~~~~---~~~~~fD~V~~~--~~l~~~-~-----~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 103 GNAMELP---FDDNSFDYVTIG--FGLRNV-P-----DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred echhcCC---CCCCCccEEEEe--cccccC-C-----CHHHHHHHHHHHcCcCeEEEE
Confidence 2222221 111111344433 456653 1 2345555 4577899855444
No 5
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=94.81 E-value=0.62 Score=42.96 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccc
Q 005954 391 GKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLW 470 (667)
Q Consensus 391 G~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~ 470 (667)
..+.-.|+|||.+.| . +.+.|+.+ +. ++|||+.+...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~~~~~~-----------~~~~~~~~~~~--------- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISPQMIEK-----------RNVVFDNFDAQ--------- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSHHHHHH-----------TTSEEEEEECH---------
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCHHHHhh-----------hhhhhhhhhhh---------
Confidence 456679999999999 3 45555554 22 99999998877665 22222211111
Q ss_pred ccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHH-hcCCc-EEEEeeecCC
Q 005954 471 MLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIR-STNPT-IVLMAEQEAE 523 (667)
Q Consensus 471 ~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IR-sL~Pk-VVVlvEqEad 523 (667)
.....++-.=+|-|...|||+. ....+|+.|+ -|+|. ++++++...+
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~------d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLP------DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSS------HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhhccccchhhHhhHHHHhhcc------cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 0111223333445556788863 3567777764 58886 5555566543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.67 E-value=3.7 Score=42.79 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=68.9
Q ss_pred hHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEec
Q 005954 382 NEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVV 461 (667)
Q Consensus 382 NqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~ 461 (667)
...+++.+.-...-+|+|+|.|.|. +...|+.+-+ |.-+||||+.+.+.++.+.++....++...-..+|. .
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~~--~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~--~ 133 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKVG--SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI--E 133 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE--E
Confidence 3444444443445689999999997 3345555432 235899999999999888776543232222233432 2
Q ss_pred cccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCc-EEEEeeec
Q 005954 462 DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPT-IVLMAEQE 521 (667)
Q Consensus 462 ~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~Pk-VVVlvEqE 521 (667)
...+++ ...++..=+|-+.+.||++. ....+|+. .|-|+|. .++++|-.
T Consensus 134 ~d~~~l-----p~~~~sfD~V~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 134 GDATDL-----PFDDCYFDAITMGYGLRNVV------DRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccccC-----CCCCCCEeEEEEecccccCC------CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 222322 23333333455667788752 23455554 4779998 45566554
No 7
>PRK06202 hypothetical protein; Provisional
Probab=94.67 E-value=0.75 Score=46.45 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=61.7
Q ss_pred hCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccc
Q 005954 389 FDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVR 468 (667)
Q Consensus 389 ~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~ 468 (667)
+...+...|+|+|.|.|. +...|...... ..+..+||||+.+.+.++...+++. ..++.+..... +++.
T Consensus 56 l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~l~~a~~~~~----~~~~~~~~~~~----~~l~ 124 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRAVAFARANPR----RPGVTFRQAVS----DELV 124 (232)
T ss_pred cCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHHHHHHHhccc----cCCCeEEEEec----cccc
Confidence 333556789999999996 33333222221 1234789999999988876655431 23555543211 1111
Q ss_pred ccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeec
Q 005954 469 LWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQE 521 (667)
Q Consensus 469 ~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqE 521 (667)
..++..=+|-|.+.|||+- ++ .+..+|+.+..+.-.++++.+-.
T Consensus 125 -----~~~~~fD~V~~~~~lhh~~-d~---~~~~~l~~~~r~~~~~~~i~dl~ 168 (232)
T PRK06202 125 -----AEGERFDVVTSNHFLHHLD-DA---EVVRLLADSAALARRLVLHNDLI 168 (232)
T ss_pred -----ccCCCccEEEECCeeecCC-hH---HHHHHHHHHHHhcCeeEEEeccc
Confidence 1122222444455688863 32 34567877766554556555443
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.74 E-value=5.9 Score=38.70 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=64.5
Q ss_pred hhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEe
Q 005954 381 ANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPV 460 (667)
Q Consensus 381 ANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V 460 (667)
.-+.+++.+.......|+|+|.+.|. +...++.+- |...++|+|+.+...++.+.+++. .+-..+|..
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~- 94 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQ- 94 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEe-
Confidence 33456666655567899999999986 233334332 233789999998887777766553 222233332
Q ss_pred ccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcE-EEEeeecC
Q 005954 461 VDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTI-VLMAEQEA 522 (667)
Q Consensus 461 ~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkV-VVlvEqEa 522 (667)
..+.++. ..++..=+|-+.+.+|+. ..+..+|+.+ +.|+|.- +++++...
T Consensus 95 -~d~~~~~-----~~~~~~D~i~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 95 -ADAEALP-----FEDNSFDAVTIAFGLRNV------TDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred -cchhcCC-----CCCCcEEEEEEeeeeCCc------ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 2222221 112222233344556654 1245556554 5688884 44555543
No 9
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.68 E-value=1.1 Score=47.41 Aligned_cols=119 Identities=9% Similarity=0.003 Sum_probs=66.1
Q ss_pred hHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEec
Q 005954 382 NEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVV 461 (667)
Q Consensus 382 NqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~ 461 (667)
.+.|++.+.-.+.-+|+|+|-+.|. +...++++- |.+++|+++. ...++.+.+ .++..|+.=.++.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~-~~~~~~a~~----~~~~~gl~~rv~~~~ 205 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNL-PGAIDLVNE----NAAEKGVADRMRGIA 205 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEec-HHHHHHHHH----HHHhCCccceEEEEe
Confidence 4677887765666799999999994 444555443 4589999986 344554443 345555532222232
Q ss_pred cccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCc-EEEEeeecCC
Q 005954 462 DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPT-IVLMAEQEAE 523 (667)
Q Consensus 462 ~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~Pk-VVVlvEqEad 523 (667)
....+. .+...+++++. .-||+.- + .....+|+.+ +.|+|. .+++.|.-.+
T Consensus 206 ~d~~~~-----~~~~~D~v~~~--~~lh~~~-~---~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 206 VDIYKE-----SYPEADAVLFC--RILYSAN-E---QLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred cCccCC-----CCCCCCEEEeE--hhhhcCC-h---HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 222111 11223444333 2356531 1 2345577665 689996 6667776443
No 10
>PRK08317 hypothetical protein; Provisional
Probab=91.89 E-value=9 Score=37.56 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHH
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDR 443 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~R 443 (667)
+++.+.-...-+|+|+|.+.|. |. ..++.+- +|.-++|+|+.+...++...++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCCHHHHHHHHHH
Confidence 5666665566789999999884 33 3334332 2345899999988777666554
No 11
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.28 E-value=0.71 Score=40.41 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=55.9
Q ss_pred EEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccCC
Q 005954 397 IIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKE 476 (667)
Q Consensus 397 IIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i~~ 476 (667)
|+|+|.|.|.-=..|.+.+ . . + |..++|||+.+++.++.+.++..+ .+++.+| +...+.++. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~-~-~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~--~~~D~~~l~-----~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-D-A-G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRF--VQADARDLP-----FSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEE--EESCTTCHH-----HHS
T ss_pred CEEeecCCcHHHHHHHHHh-h-h-c-ccceEEEEECCHHHHHHHHHhchh----cCCceEE--EECCHhHCc-----ccC
Confidence 7999999998777777776 2 1 2 458999999999999877766554 4556666 333333332 122
Q ss_pred CcE-EEEEeccchhhcccCCCCChHHHHHHHHHh-cCC
Q 005954 477 KES-VAVNCIFQLHKTLYSGNGGVLRDFLGLIRS-TNP 512 (667)
Q Consensus 477 gEa-LAVN~~~~LH~lL~des~~~l~~fL~~IRs-L~P 512 (667)
+.. +||++...+||+ .+ ..+..+|+.+.+ ++|
T Consensus 66 ~~~D~v~~~~~~~~~~-~~---~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHL-SP---EELEALLRRIARLLRP 99 (101)
T ss_dssp SSEEEEEE-TTGGGGS-SH---HHHHHHHHHHHHTEEE
T ss_pred CCeeEEEEcCCccCCC-CH---HHHHHHHHHHHHHhCC
Confidence 222 444445557774 22 346667766643 444
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=91.20 E-value=7.5 Score=39.92 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..+++.+.-...-+|+|+|.|.|. +...|+.+- |..++|||+.++..++.+. ..++.|. ..
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a~--------~~~~~~~----~~ 79 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAAR--------ERGVDAR----TG 79 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHH--------hcCCcEE----Ec
Confidence 356777665556789999999994 555666653 2368999999887665543 3355442 12
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCcEEEEeeec
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPTIVLMAEQE 521 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~PkVVVlvEqE 521 (667)
..+++. ..+..=+|-|...||++ .| ...+|+. .+.|+|.-.++....
T Consensus 80 d~~~~~------~~~~fD~v~~~~~l~~~-~d-----~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 80 DVRDWK------PKPDTDVVVSNAALQWV-PE-----HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred ChhhCC------CCCCceEEEEehhhhhC-CC-----HHHHHHHHHHhCCCCcEEEEEcC
Confidence 222221 11222233344456775 22 3445554 577999966655433
No 13
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=90.87 E-value=4.9 Score=43.73 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=57.9
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC--ceEEEEeccccccccccc
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL--PFEFHPVVDRLEDVRLWM 471 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV--pFEF~~V~~~lE~l~~~~ 471 (667)
...|+|+|.|.|. +...|+.+ + .++|||+.+.+.++...++ ++..++ ..+|. ....+++.
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~--~~dae~l~--- 193 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYL--CTTAEKLA--- 193 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEE--ecCHHHhh---
Confidence 3479999999998 45567653 2 4899999998877666544 222222 23332 22333332
Q ss_pred cccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHH-hcCCcEEEEee
Q 005954 472 LHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIR-STNPTIVLMAE 519 (667)
Q Consensus 472 L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IR-sL~PkVVVlvE 519 (667)
...+..=+|-|...|||+- | ...||+.++ -|+|.-.++..
T Consensus 194 --~~~~~FD~Vi~~~vLeHv~-d-----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 194 --DEGRKFDAVLSLEVIEHVA-N-----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred --hccCCCCEEEEhhHHHhcC-C-----HHHHHHHHHHHcCCCcEEEEE
Confidence 1112222444556778852 2 356777764 57998555554
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=90.76 E-value=15 Score=36.24 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
+++.+.-....+|+|+|.+.|.- ...++.+- |+..++|+++.+...++.+.+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~----~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDL----AIALAKAV--GKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHH----HHHHHHHc--CCCCeEEEEeCCHHHHHHHHHhhc
Confidence 44444444457899999999862 22333321 236799999998887777666553
No 15
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.41 E-value=2.8 Score=44.61 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccc-ccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLED-VRLWMLH 473 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~-l~~~~L~ 473 (667)
..|||+|.|.|.-=..|+++|.. ..++|+|+.+.+.|+.+.++|..- .-+++++ .+...+.+ +... -.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~--~i~gD~~~~~~~~-~~ 133 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAAD--YPQLEVH--GICADFTQPLALP-PE 133 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHhh--CCCceEE--EEEEcccchhhhh-cc
Confidence 57999999999877788888753 378999999999999999988641 1234443 34333222 1100 00
Q ss_pred cCCCcEEEEEeccchhhcccCCCCChHHHHHHHHH-hcCCcEEEEeeec
Q 005954 474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIR-STNPTIVLMAEQE 521 (667)
Q Consensus 474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IR-sL~PkVVVlvEqE 521 (667)
...+..+++.+...++++-. .....+|+.|+ .|+|.-..+...+
T Consensus 134 ~~~~~~~~~~~gs~~~~~~~----~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 134 PAAGRRLGFFPGSTIGNFTP----EEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccCCeEEEEecccccCCCH----HHHHHHHHHHHHhcCCCCEEEEecc
Confidence 11124566666666666532 23567888874 6899865555443
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.25 E-value=0.97 Score=39.55 Aligned_cols=104 Identities=21% Similarity=0.198 Sum_probs=60.7
Q ss_pred EEEEccccCCCChHHHHHHHhc-CCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccccc
Q 005954 396 HIIDFDIKQGLQWPSFFQSLAS-RPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHV 474 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~-R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i 474 (667)
+|+|+|-+.|.-= ..|+. ++ ..+||||+.+++.++...+++.+....-+ .+|.. ..+ . .....
T Consensus 4 ~vLDlGcG~G~~~----~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--i~~~~--~d~-~---~~~~~ 67 (112)
T PF12847_consen 4 RVLDLGCGTGRLS----IALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDR--ITFVQ--GDA-E---FDPDF 67 (112)
T ss_dssp EEEEETTTTSHHH----HHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTT--EEEEE--SCC-H---GGTTT
T ss_pred EEEEEcCcCCHHH----HHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCC--eEEEE--Ccc-c---cCccc
Confidence 6899999998543 33333 23 47899999999999988888744333333 44332 122 0 01111
Q ss_pred C-CCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEee
Q 005954 475 K-EKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 475 ~-~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvE 519 (667)
. +=++++.+. +.+|+++.. ...+.+|+.+ +.|+|.-+++++
T Consensus 68 ~~~~D~v~~~~-~~~~~~~~~---~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 68 LEPFDLVICSG-FTLHFLLPL---DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SSCEEEEEECS-GSGGGCCHH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEECC-Cccccccch---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 123445544 455555432 2356677766 579999776664
No 17
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=90.15 E-value=12 Score=36.72 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=54.8
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWML 472 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L 472 (667)
+..+|+|+|.|.|.-.- .|+.+- |..++|+|+.+...++.+..++.. ++ +| +...+++..
T Consensus 34 ~~~~vLDlG~G~G~~~~----~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~-----~~--~~--~~~d~~~~~---- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTR----ALLKRF---PQAEFIALDISAGMLAQAKTKLSE-----NV--QF--ICGDAEKLP---- 93 (240)
T ss_pred CCCeEEEECCCccHHHH----HHHHhC---CCCcEEEEeChHHHHHHHHHhcCC-----CC--eE--EecchhhCC----
Confidence 34689999999996333 333331 346799999988777666655431 22 22 222333221
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEee
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvE 519 (667)
..++..=+|-+...||++ . ....+|..+ +.|+|.-+++..
T Consensus 94 -~~~~~fD~vi~~~~l~~~-~-----~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 94 -LEDSSFDLIVSNLALQWC-D-----DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -CCCCceeEEEEhhhhhhc-c-----CHHHHHHHHHHHcCCCcEEEEE
Confidence 112211223344556664 2 245566665 568998655554
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.14 E-value=2 Score=40.39 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=61.9
Q ss_pred CCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecccccccccc
Q 005954 392 KDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLW 470 (667)
Q Consensus 392 ~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~ 470 (667)
.+..+|+|+|.|.|..=..|.+.+. + ..+||||+.+++.++.... .++.++++ .+|. ...++++...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~----~--~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~--~~d~~~l~~~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN----P--GAKIIGVDISEEMIEYAKK----RAKELGLDNIEFI--QGDIEDLPQE 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST----T--TSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEE--ESBTTCGCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC----C--CCEEEEEECcHHHHHHhhc----ccccccccccceE--Eeehhccccc
Confidence 3567899999999965444444221 1 3569999999988866655 56667886 5554 3444444321
Q ss_pred ccccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCcEEEE-eeec
Q 005954 471 MLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPTIVLM-AEQE 521 (667)
Q Consensus 471 ~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~PkVVVl-vEqE 521 (667)
+. ..=+.|+.+ ..||++ .....+|.. .+.|+|..+++ ++..
T Consensus 70 -~~-~~~D~I~~~--~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 -LE-EKFDIIISN--GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -SS-TTEEEEEEE--STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -cC-CCeeEEEEc--Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 22 122334444 344654 234455554 67899885554 4444
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=89.21 E-value=1.6 Score=45.18 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=65.3
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccc
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDR 463 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~ 463 (667)
.+++.+...+..+|+|++.|.|.-+..| +.+.+ |.-+||||+.+..-|+...+++.+.... ..+| +...
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~--v~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQ---NIEF--VQGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-HHHHHHHHHHHHHTT-----SEEE--EE-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCC---CeeE--EEcC
Confidence 4555566666779999999999655444 44332 2359999999999999999988765433 3333 2222
Q ss_pred cccccccccccCCCcEEEEEeccchhhcccCCCCChHHH-HHHHHHhcCCc-EEEEeeec
Q 005954 464 LEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRD-FLGLIRSTNPT-IVLMAEQE 521 (667)
Q Consensus 464 lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~-fL~~IRsL~Pk-VVVlvEqE 521 (667)
.+ .|...++..=+|-|.|.||++. | ... +=.+.|=|+|. .++++|-.
T Consensus 107 a~-----~lp~~d~sfD~v~~~fglrn~~-d-----~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 107 AE-----DLPFPDNSFDAVTCSFGLRNFP-D-----RERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp TT-----B--S-TT-EEEEEEES-GGG-S-S-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HH-----HhcCCCCceeEEEHHhhHHhhC-C-----HHHHHHHHHHHcCCCeEEEEeecc
Confidence 23 3344455556888999998752 2 333 44556779998 45566654
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=89.08 E-value=12 Score=39.04 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=40.5
Q ss_pred hhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 380 TANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 380 tANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
-+.+.|++.+.-...-+|+|+|.+.|.-- ..|+.+. ..++|||+.+...++...+++.
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHHHHHHHHHHcC
Confidence 44566777776566678999999999843 3344332 2589999998887777666543
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=88.18 E-value=20 Score=37.61 Aligned_cols=188 Identities=21% Similarity=0.268 Sum_probs=105.5
Q ss_pred Cccchh-hhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHH
Q 005954 372 PIPKFI-HFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEA 450 (667)
Q Consensus 372 Pf~kFA-hftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~s 450 (667)
.++.|+ |.+=+++..+.+.-.+--+|+|.+.|-|- +.-.|++.-+ .-+||||+.+...|+...+|+.+
T Consensus 29 ~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~---- 97 (238)
T COG2226 29 DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG---TGEVVGLDISESMLEVAREKLKK---- 97 (238)
T ss_pred ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC---CceEEEEECCHHHHHHHHHHhhc----
Confidence 444444 45556666666654467899999998874 2333444333 68999999999999888888664
Q ss_pred cCCc-eEEEEeccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeeecCCCCCcc
Q 005954 451 LNLP-FEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQEAEHNSPF 528 (667)
Q Consensus 451 lgVp-FEF~~V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEqEadhNsp~ 528 (667)
.|+- ++| |....|+| ...++-.=+|-+.|.||++ . ..+.+|+-+ |=|+|...+++-.=.....+.
T Consensus 98 ~~~~~i~f--v~~dAe~L-----Pf~D~sFD~vt~~fglrnv-~-----d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 98 KGVQNVEF--VVGDAENL-----PFPDNSFDAVTISFGLRNV-T-----DIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred cCccceEE--EEechhhC-----CCCCCccCEEEeeehhhcC-C-----CHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 2222 343 33333333 3444444477888888875 2 245566544 668999766654433444443
Q ss_pred hhHHHHHHHH-HHHH-HHHHhhhhCCCCcHHHHHHHHHhhhhhhheeeccCCCccccccchhHHHHHHHcCCCeecc
Q 005954 529 LETRVSNSLR-YYSA-LFDLIDYSLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMG 603 (667)
Q Consensus 529 F~~RF~EAL~-yYsA-lFDSLea~lp~~s~eR~~iE~~fgrEI~NIVAcEG~dRvERhE~~~qWr~Rm~rAGF~~vp 603 (667)
| ...++ ||.. ++=.+......+......+. .-|+ ++-..+.-...|+.+||..+.
T Consensus 165 ~----~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~----eSi~------------~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 165 L----RKAYILYYFKYVLPLIGKLVAKDAEAYEYLA----ESIR------------RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred h----HHHHHHHHHHhHhhhhceeeecChHHHHHHH----HHHH------------hCCCHHHHHHHHHhcCceEEe
Confidence 3 33333 3333 44444443332333333322 2222 222334445667789998765
No 22
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.53 E-value=14 Score=40.22 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHH-c-CCceEEEEecccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEA-L-NLPFEFHPVVDRLEDVRLW 470 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~s-l-gVpFEF~~V~~~lE~l~~~ 470 (667)
+...|+|+|.|.|. +...|+.+ + .+||||+.+...++...++..+.-.. . +...+|... .+++++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl~~l~-- 210 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--DLESLS-- 210 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--chhhcC--
Confidence 45689999999987 44555554 2 48999999999888877765432100 1 223444321 222221
Q ss_pred ccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEee
Q 005954 471 MLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAE 519 (667)
Q Consensus 471 ~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvE 519 (667)
..=+ +|| |...|||+. + .....+++.++.+.|..+++.-
T Consensus 211 ----~~fD-~Vv-~~~vL~H~p-~---~~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 211 ----GKYD-TVT-CLDVLIHYP-Q---DKADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred ----CCcC-EEE-EcCEEEecC-H---HHHHHHHHHHHhhcCCEEEEEe
Confidence 0112 233 444556643 2 2345678888888888777743
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=85.52 E-value=1.4 Score=46.07 Aligned_cols=53 Identities=19% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCCeEEEEEccccCCCChHHHHHHHhcCCC--CCCeEEEeeeCCChHHHHHHHHH
Q 005954 391 GKDRVHIIDFDIKQGLQWPSFFQSLASRPN--PPSHVRITGIGESKQELNETGDR 443 (667)
Q Consensus 391 G~~~VHIIDFgI~~G~QWPsLIQaLA~R~g--gPP~LRITgI~~s~~~L~etG~R 443 (667)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+..+|+|++.+...|+.+.+.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 345799999999999887766655555322 23468999999999888776654
No 24
>PRK05785 hypothetical protein; Provisional
Probab=84.56 E-value=19 Score=36.74 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=53.0
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccc
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLH 473 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~ 473 (667)
.-.|+|+|.|-|.-. ..|+.+.+ .+||||+.+.+.|+....+ ..+ +....+++ .
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~~Ml~~a~~~---------~~~----~~~d~~~l-----p 105 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAENMLKMNLVA---------DDK----VVGSFEAL-----P 105 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCHHHHHHHHhc---------cce----EEechhhC-----C
Confidence 347999999999543 34444431 4899999999887765432 111 22222322 2
Q ss_pred cCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeee
Q 005954 474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQ 520 (667)
Q Consensus 474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEq 520 (667)
..++..=+|-+.+.||++ .| +..+|+.+ |-|+|.+ +++|-
T Consensus 106 ~~d~sfD~v~~~~~l~~~-~d-----~~~~l~e~~RvLkp~~-~ile~ 146 (226)
T PRK05785 106 FRDKSFDVVMSSFALHAS-DN-----IEKVIAEFTRVSRKQV-GFIAM 146 (226)
T ss_pred CCCCCEEEEEecChhhcc-CC-----HHHHHHHHHHHhcCce-EEEEe
Confidence 333433355556678774 22 34555555 5678854 34443
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.39 E-value=14 Score=41.56 Aligned_cols=137 Identities=9% Similarity=0.112 Sum_probs=71.8
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..|++.+.....-+|+|+|.|.|.--.. |+.+. -++|||+.+...++.... +. ...-..+|. ..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~----la~~~-----~~v~giD~s~~~l~~a~~-~~----~~~~~i~~~--~~ 90 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGE----LAKKA-----GQVIALDFIESVIKKNES-IN----GHYKNVKFM--CA 90 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHH----HHhhC-----CEEEEEeCCHHHHHHHHH-Hh----ccCCceEEE--Ee
Confidence 4566666554445899999999954444 44442 278999998887764322 11 111123332 11
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeeecCCCC--------CcchhHHH
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQEAEHN--------SPFLETRV 533 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEqEadhN--------sp~F~~RF 533 (667)
.+++. .+....+..=+|-|.+.||++- + ..+..+|..+ |-|+|.-+++....+-++ .|.+.
T Consensus 91 d~~~~---~~~~~~~~fD~I~~~~~l~~l~-~---~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~--- 160 (475)
T PLN02336 91 DVTSP---DLNISDGSVDLIFSNWLLMYLS-D---KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHY--- 160 (475)
T ss_pred ccccc---ccCCCCCCEEEEehhhhHHhCC-H---HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCee---
Confidence 11111 1122223223444556678763 2 2356677666 558999666553333222 22222
Q ss_pred HHHHHHHHHHHHH
Q 005954 534 SNSLRYYSALFDL 546 (667)
Q Consensus 534 ~EAL~yYsAlFDS 546 (667)
....+|..+|+.
T Consensus 161 -~~~~~~~~~f~~ 172 (475)
T PLN02336 161 -REPRFYTKVFKE 172 (475)
T ss_pred -cChHHHHHHHHH
Confidence 225578778766
No 26
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=82.86 E-value=10 Score=38.32 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=58.9
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccC
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVK 475 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i~ 475 (667)
.|+|+|.|.|..-..|.+.+ + ..++|||+.+.+.++.+.+++. ++.+. ...+.+ ...
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~~------~~~~~----~~d~~~------~~~ 102 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYLP------NINII----QGSLFD------PFK 102 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhCC------CCcEE----EeeccC------CCC
Confidence 59999999996555554432 1 3689999999988877665431 23222 111111 111
Q ss_pred CCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeecC
Q 005954 476 EKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEA 522 (667)
Q Consensus 476 ~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqEa 522 (667)
++..=+|-+...|||+- + ..+..+++.+.+..-+.++++|...
T Consensus 103 ~~sfD~V~~~~vL~hl~--p--~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHIN--P--DNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CCCEEEEEECChhhhCC--H--HHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 22222333455567752 1 3456677777777778899998764
No 27
>PRK06922 hypothetical protein; Provisional
Probab=81.95 E-value=26 Score=42.01 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=62.0
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHV 474 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i 474 (667)
-.|+|+|.|.|. ++..|+.+. |..++|||+.+...++.+..++. ..+.++++ +.....++.. .+
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~--I~gDa~dLp~---~f 483 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNV--IKGDAINLSS---SF 483 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEE--EEcchHhCcc---cc
Confidence 479999999984 445566542 35799999999988887766543 23455444 2222222210 12
Q ss_pred CCCcEEEEEeccchhhcccC----C---CCChHHHHHHHH-HhcCCc-EEEEeee
Q 005954 475 KEKESVAVNCIFQLHKTLYS----G---NGGVLRDFLGLI-RSTNPT-IVLMAEQ 520 (667)
Q Consensus 475 ~~gEaLAVN~~~~LH~lL~d----e---s~~~l~~fL~~I-RsL~Pk-VVVlvEq 520 (667)
.++.+=+|-+.+.||+++.. + ....+..+|+.+ +.|+|. .++++|.
T Consensus 484 edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 484 EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 33433344455567776421 0 012344566554 789998 5555553
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=81.50 E-value=14 Score=38.05 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=63.4
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..|++.+. .+.-+|+|+|.|.|. +...|+.+. .++|+|+.+.+.++.+.+++. ..|+.-....+..
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~g-----~~v~~vD~s~~~l~~a~~~~~----~~g~~~~v~~~~~ 100 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAELG-----HQVILCDLSAEMIQRAKQAAE----AKGVSDNMQFIHC 100 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHcC-----CEEEEEECCHHHHHHHHHHHH----hcCCccceEEEEc
Confidence 34666665 344699999999994 555666652 489999999988887766544 3454322222333
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCcEEEEe
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPTIVLMA 518 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~PkVVVlv 518 (667)
.++++.. ..++..=+|-|...||++ .+ ...+|.. .+-|+|.-.+++
T Consensus 101 d~~~l~~----~~~~~fD~V~~~~vl~~~-~~-----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 101 AAQDIAQ----HLETPVDLILFHAVLEWV-AD-----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CHHHHhh----hcCCCCCEEEehhHHHhh-CC-----HHHHHHHHHHHcCCCeEEEE
Confidence 3333321 111211123344556764 22 2344544 567999955543
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=80.97 E-value=44 Score=34.52 Aligned_cols=100 Identities=14% Similarity=0.275 Sum_probs=53.3
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEeccccccccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLWMLH 473 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~~L~ 473 (667)
=+|+|+|.|.|.-...+ +...+ +.-+||+|+.+...++.+.++. +.++++ .+| +...++++.
T Consensus 79 ~~VLDiG~G~G~~~~~~----a~~~g--~~~~v~gvD~s~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~l~----- 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLA----ARRVG--PTGKVIGVDMTPEMLAKARANA----RKAGYTNVEF--RLGEIEALP----- 141 (272)
T ss_pred CEEEEeCCCCCHHHHHH----HHHhC--CCCEEEEECCCHHHHHHHHHHH----HHcCCCCEEE--EEcchhhCC-----
Confidence 38999999887422222 22111 2358999999988777766543 334442 333 222333332
Q ss_pred cCCC--cEEEEEeccchhhcccCCCCChHHHHH-HHHHhcCCc-EEEEee
Q 005954 474 VKEK--ESVAVNCIFQLHKTLYSGNGGVLRDFL-GLIRSTNPT-IVLMAE 519 (667)
Q Consensus 474 i~~g--EaLAVN~~~~LH~lL~des~~~l~~fL-~~IRsL~Pk-VVVlvE 519 (667)
+..+ +.|+.|+++ |+. .+ ...+| ...|-|+|. .+++++
T Consensus 142 ~~~~~fD~Vi~~~v~--~~~-~d-----~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 VADNSVDVIISNCVI--NLS-PD-----KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCCceeEEEEcCcc--cCC-CC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 2222 345556654 432 22 23344 455778998 444444
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=80.33 E-value=21 Score=40.02 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=64.1
Q ss_pred hHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEec
Q 005954 382 NEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVV 461 (667)
Q Consensus 382 NqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~ 461 (667)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+...++.+.++. ...+...+|...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~~- 321 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERA----IGRKCSVEFEVA- 321 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHh----hcCCCceEEEEc-
Confidence 3556666543445689999999995 3455666542 48999999988777665543 233444555322
Q ss_pred cccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCcEEEEee
Q 005954 462 DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPTIVLMAE 519 (667)
Q Consensus 462 ~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~PkVVVlvE 519 (667)
.+.+. .+.++..=+|-|...++|+. ....+|+. .+-|+|.-.++..
T Consensus 322 -d~~~~-----~~~~~~fD~I~s~~~l~h~~------d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 322 -DCTKK-----TYPDNSFDVIYSRDTILHIQ------DKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred -CcccC-----CCCCCCEEEEEECCcccccC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 12111 11122222444555566652 23455554 4679999665544
No 31
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=80.16 E-value=58 Score=32.65 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=36.6
Q ss_pred hhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 005954 388 AFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFH 458 (667)
Q Consensus 388 A~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~ 458 (667)
.+......+|+|+|.+.|.- ...|+.+ + .++|+|+.++..++.+.+++. ..++..+|.
T Consensus 43 ~~~~~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~ 100 (233)
T PRK05134 43 HAGGLFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEENIEVARLHAL----ESGLKIDYR 100 (233)
T ss_pred hccCCCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHHHHHHHHHHHH----HcCCceEEE
Confidence 33344567899999998863 3344443 2 469999998887776665543 234444553
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=78.49 E-value=20 Score=36.55 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=63.1
Q ss_pred hhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEe
Q 005954 381 ANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPV 460 (667)
Q Consensus 381 ANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V 460 (667)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+- |..+++||+.+...++.+.+++. + .+|.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~~~------~--~~~~-- 81 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLAEARSRLP------D--CQFV-- 81 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHhCC------C--CeEE--
Confidence 35567777765566789999999993 345555542 23689999999887766655421 2 2332
Q ss_pred ccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHH-HHHHhcCCcEEEEeee
Q 005954 461 VDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFL-GLIRSTNPTIVLMAEQ 520 (667)
Q Consensus 461 ~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL-~~IRsL~PkVVVlvEq 520 (667)
...++++.. ...=+.| -|...||++ .| ...+| +..+.|+|.-.+++..
T Consensus 82 ~~d~~~~~~----~~~fD~v--~~~~~l~~~-~d-----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 82 EADIASWQP----PQALDLI--FANASLQWL-PD-----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ECchhccCC----CCCccEE--EEccChhhC-CC-----HHHHHHHHHHhcCCCcEEEEEC
Confidence 112222111 0111333 344556764 22 23444 4457789997776654
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=78.10 E-value=24 Score=35.08 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=62.3
Q ss_pred hhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEE
Q 005954 381 ANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHP 459 (667)
Q Consensus 381 ANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~ 459 (667)
+++.+++.+.....-.|+|+|.|.|. +...||.+ + .+||||+.+...++...+++ +..++. .++.
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~~i~~a~~~~----~~~~~~~v~~~- 83 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPMSIANLERIK----AAENLDNLHTA- 83 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHHHHHHHHHHH----HHcCCCcceEE-
Confidence 44566666655455689999999997 33445554 2 48999999988777665443 234443 3332
Q ss_pred eccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEE
Q 005954 460 VVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVL 516 (667)
Q Consensus 460 V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVV 516 (667)
...+.++. +. ..=+.|+.+ +.+|++- + ..+..+++.+ +-|+|.-.+
T Consensus 84 -~~d~~~~~---~~-~~fD~I~~~--~~~~~~~-~---~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 84 -VVDLNNLT---FD-GEYDFILST--VVLMFLE-A---KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred -ecChhhCC---cC-CCcCEEEEe--cchhhCC-H---HHHHHHHHHHHHHcCCCcEE
Confidence 22232221 11 112334433 3456542 1 2355666655 679999754
No 34
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=78.04 E-value=13 Score=40.76 Aligned_cols=119 Identities=19% Similarity=0.284 Sum_probs=68.1
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHc---CCceEEEEe--c-ccc-c
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEAL---NLPFEFHPV--V-DRL-E 465 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~sl---gVpFEF~~V--~-~~l-E 465 (667)
...+|+|++.|.|.= |..-...+ -=.+.||+.+.+.++++.+|..+.-+.. ...+.|.+. . +.. +
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~ 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE 133 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc
Confidence 679999999999862 11111111 2467899999999999999986555332 223333322 2 221 2
Q ss_pred cccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEE-EEeeecC
Q 005954 466 DVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIV-LMAEQEA 522 (667)
Q Consensus 466 ~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVV-VlvEqEa 522 (667)
.+. ..+.-.....=+|+|+|.||.....+ ...+.+|+.| ..|+|.-+ +.+-.++
T Consensus 134 ~l~-~~~~~~~~~FDvVScQFalHY~Fese--~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 134 SLR-EKLPPRSRKFDVVSCQFALHYAFESE--EKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHH-CTSSSTTS-EEEEEEES-GGGGGSSH--HHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hhh-hhccccCCCcceeehHHHHHHhcCCH--HHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 221 11222224566999999999987544 5567788777 67999844 4444554
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=77.52 E-value=4.1 Score=33.85 Aligned_cols=93 Identities=22% Similarity=0.183 Sum_probs=54.2
Q ss_pred EEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccCCC
Q 005954 398 IDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEK 477 (667)
Q Consensus 398 IDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i~~g 477 (667)
+|+|.+.|.....|.+. +-.++|+|+.+.+.++...+++. ..++.|. ....+ .+...++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~----~~~~~~~----~~d~~-----~l~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK----NEGVSFR----QGDAE-----DLPFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT----TSTEEEE----ESBTT-----SSSS-TT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc----ccCchhe----eehHH-----hCccccc
Confidence 58888888776666665 24789999999887776666543 2333321 22222 3344455
Q ss_pred cEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEE
Q 005954 478 ESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLM 517 (667)
Q Consensus 478 EaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVl 517 (667)
-.=+|-+...+|++ .....+|+-+ |-|+|.-+.+
T Consensus 60 sfD~v~~~~~~~~~------~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL------EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGS------SHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeec------cCHHHHHHHHHHHcCcCeEEe
Confidence 55466666777776 2345555544 6788875544
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=76.93 E-value=19 Score=37.96 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=60.2
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..+++++.-.+.-+|+|+|.|.|. +...|+.+ + .++|||+.+...++.+.+ .|+..++.+++...
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~ai~~~~~----~~~~~~l~v~~~~~-- 174 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQSLENLQE----IAEKENLNIRTGLY-- 174 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHH----HHHHcCCceEEEEe--
Confidence 345555432222389999999997 34445554 2 589999999887765544 34556776655322
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEE
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIV 515 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVV 515 (667)
.+++.. +. ..=+.|+.+. .||++- + ..+..+|+.+ +.|+|.-+
T Consensus 175 D~~~~~---~~-~~fD~I~~~~--vl~~l~-~---~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 175 DINSAS---IQ-EEYDFILSTV--VLMFLN-R---ERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred chhccc---cc-CCccEEEEcc--hhhhCC-H---HHHHHHHHHHHHhcCCCcE
Confidence 221111 10 1113343333 456642 1 2455677665 67999855
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=76.60 E-value=19 Score=35.74 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=64.4
Q ss_pred hhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEE
Q 005954 380 TANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHP 459 (667)
Q Consensus 380 tANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~ 459 (667)
++...|++++.-...-+|+|+|.|.|.--.. ||.+ + .++|||+.+...++.+.++ ++..|++..+..
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~----la~~-g----~~V~~iD~s~~~l~~a~~~----~~~~~~~v~~~~ 83 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLY----LSLA-G----YDVRAWDHNPASIASVLDM----KARENLPLRTDA 83 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHH----HHHC-C----CeEEEEECCHHHHHHHHHH----HHHhCCCceeEe
Confidence 4567888888765567999999999974433 3443 2 4899999988777665543 344566644432
Q ss_pred eccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEE
Q 005954 460 VVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIV 515 (667)
Q Consensus 460 V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVV 515 (667)
. .+.... +. ..=+.|+.+. .+|++-. ..+..+++.+ +.|+|.-.
T Consensus 84 ~--d~~~~~---~~-~~fD~I~~~~--~~~~~~~----~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 84 Y--DINAAA---LN-EDYDFIFSTV--VFMFLQA----GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred c--cchhcc---cc-CCCCEEEEec--ccccCCH----HHHHHHHHHHHHHhCCCcE
Confidence 2 111111 11 1123343333 3565421 2345667665 67899964
No 38
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=76.21 E-value=33 Score=33.69 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHH
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNET 440 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~et 440 (667)
.|.+.+... -+|+|+|.+.|. ++..|+.+.+ .+++||+.+.+.++..
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHHH
Confidence 345555433 379999999995 5566765432 3579999887766554
No 39
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=76.03 E-value=48 Score=36.24 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=89.6
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecc
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVD 462 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~ 462 (667)
.|.+++.. ...|||||-|.|..=..||++|.... . ..+-.+|+-+.+.|+++.++|. .-..| .++++|..
T Consensus 69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~-~--~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~g 139 (319)
T TIGR03439 69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQK-K--SVDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcC-C--CceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEe
Confidence 34455532 34799999999999999999997422 1 3677999999999999999997 12245 77777764
Q ss_pred ccccccccccc-cCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHh--cCCcEEEEeeecCC---------CCCc-ch
Q 005954 463 RLEDVRLWMLH-VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRS--TNPTIVLMAEQEAE---------HNSP-FL 529 (667)
Q Consensus 463 ~lE~l~~~~L~-i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRs--L~PkVVVlvEqEad---------hNsp-~F 529 (667)
..++.-.+.-. ...+...+| +.|-..+..-.+.....||+.+++ |+|.=..++-.|.. +|.+ ..
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~---~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gv 216 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTI---LWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGV 216 (319)
T ss_pred cHHHHHhhcccccccCCccEE---EEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcch
Confidence 33322111000 011222222 222222222222335579999987 89975555533432 3443 23
Q ss_pred -hHHHHHHHHHHHHHHHH
Q 005954 530 -ETRVSNSLRYYSALFDL 546 (667)
Q Consensus 530 -~~RF~EAL~yYsAlFDS 546 (667)
.....+.|.+.-..++.
T Consensus 217 Ta~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 217 TRRFVLNGLVHANEILGS 234 (319)
T ss_pred hHHHHHHHHHHHHHHhCc
Confidence 34456777777777764
No 40
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=74.12 E-value=25 Score=37.25 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=70.2
Q ss_pred hhhhhhHHHHHhhC----CCCeEEEEEccccCCC-ChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHc
Q 005954 377 IHFTANEMLLRAFD----GKDRVHIIDFDIKQGL-QWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEAL 451 (667)
Q Consensus 377 AhftANqAILEA~e----G~~~VHIIDFgI~~G~-QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~sl 451 (667)
+++++-..||+.+. +..--+|+|||-|-|. =|.. .+.+ + ....+|.|+.+...+ +++++|.+-....
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~-----~-~~~~~~~vd~s~~~~-~l~~~l~~~~~~~ 84 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW-----P-SLKEYTCVDRSPEML-ELAKRLLRAGPNN 84 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh-----c-CceeeeeecCCHHHH-HHHHHHHhccccc
Confidence 45566666666654 3455699999999885 2321 1222 1 357899999877665 4666665422211
Q ss_pred CCceEEEEeccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeeecCCCCCcchh
Q 005954 452 NLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQEAEHNSPFLE 530 (667)
Q Consensus 452 gVpFEF~~V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEqEadhNsp~F~ 530 (667)
.. .+.. ..+......+.+.+.|++. +.|-.+ .+ ..+.++++.+ ..+++ ++|++|...- .+-..+
T Consensus 85 ~~-~~~~------~~~~~~~~~~~~~DLvi~s--~~L~EL-~~---~~r~~lv~~LW~~~~~-~LVlVEpGt~-~Gf~~i 149 (274)
T PF09243_consen 85 RN-AEWR------RVLYRDFLPFPPDDLVIAS--YVLNEL-PS---AARAELVRSLWNKTAP-VLVLVEPGTP-AGFRRI 149 (274)
T ss_pred cc-chhh------hhhhcccccCCCCcEEEEe--hhhhcC-Cc---hHHHHHHHHHHHhccC-cEEEEcCCCh-HHHHHH
Confidence 10 0111 0111111233333433333 223232 11 3455677777 55666 8888887633 333444
Q ss_pred HHHHHHH
Q 005954 531 TRVSNSL 537 (667)
Q Consensus 531 ~RF~EAL 537 (667)
.+.++.|
T Consensus 150 ~~aR~~l 156 (274)
T PF09243_consen 150 AEARDQL 156 (274)
T ss_pred HHHHHHH
Confidence 4555544
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=73.19 E-value=28 Score=34.82 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=43.1
Q ss_pred hhhhhhHHHHHhhC--CCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 377 IHFTANEMLLRAFD--GKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 377 AhftANqAILEA~e--G~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
++-...+.+++.+. ..+.-+|+|+|.+.|. +...|+.+. .+||||+.+.+.++...+++.
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCHHHHHHHHHHHH
Confidence 34455667777765 2456799999999985 555666542 489999999888877777664
No 42
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=70.20 E-value=27 Score=37.10 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..|+|.+.=+.-=||+|+|.| |-.++..+|++.| .++|||..+.+..+.+.++ ++..|++=....+..
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYARER----IREAGLEDRVEVRLQ 119 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHH----HHCSTSSSTEEEEES
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEEe
Confidence 456777655555699998776 6788999998863 7899999988777665554 446677633333333
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEee
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvE 519 (667)
.+.+++. .=|-++.|-. +-|+-. ...+.|++.| +-|+|.-.+++.
T Consensus 120 D~~~~~~-----~fD~IvSi~~---~Ehvg~----~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 120 DYRDLPG-----KFDRIVSIEM---FEHVGR----KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGG--------S-SEEEEESE---GGGTCG----GGHHHHHHHHHHHSETTEEEEEE
T ss_pred eccccCC-----CCCEEEEEec---hhhcCh----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 3333322 2232333322 334311 3467888888 569999776653
No 43
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=69.41 E-value=69 Score=32.54 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=62.2
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecccccc-cccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLED-VRLWML 472 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~-l~~~~L 472 (667)
-.|+|++-|.|. --|.+|+... -+||+|+.+.+.++.+.+.+.. +|+. .+| +...+.+ +.. .
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~a-----~~V~~vE~~~~a~~~a~~Nl~~----~~~~~v~~--~~~D~~~~l~~--~ 118 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRYA-----AGATLLEMDRAVAQQLIKNLAT----LKAGNARV--VNTNALSFLAQ--P 118 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcCC-----CEEEEEECCHHHHHHHHHHHHH----hCCCcEEE--EEchHHHHHhh--c
Confidence 378999999883 2334555421 3799999888777666554433 3442 333 2222211 110 0
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHh---cCCcEEEEeeecCCCC
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRS---TNPTIVLMAEQEAEHN 525 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRs---L~PkVVVlvEqEadhN 525 (667)
-..=+.|++|=.|.- +....++..|.. ++|+-++++|.....+
T Consensus 119 -~~~fDlV~~DPPy~~---------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 119 -GTPHNVVFVDPPFRK---------GLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred -CCCceEEEECCCCCC---------ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 112366777766521 334567888877 6999999999887644
No 44
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=64.84 E-value=39 Score=32.54 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.++..++.+.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHhc
Confidence 346666654444489999999986 55555655 2 479999999887777766653
No 45
>PLN02244 tocopherol O-methyltransferase
Probab=64.70 E-value=81 Score=34.28 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=57.6
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC--ceEEEEecccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL--PFEFHPVVDRLEDVRLW 470 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV--pFEF~~V~~~lE~l~~~ 470 (667)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+...++...++ ++..|+ ..+|. .....++
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~--~~D~~~~--- 180 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQ--VADALNQ--- 180 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEE--EcCcccC---
Confidence 34579999999985 4555665442 4899999988766655443 334454 34543 2222222
Q ss_pred ccccCCCcEEEEEeccchhhcccCCCCChHHHHHH-HHHhcCCc-EEEEee
Q 005954 471 MLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLG-LIRSTNPT-IVLMAE 519 (667)
Q Consensus 471 ~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~-~IRsL~Pk-VVVlvE 519 (667)
...++..=+|-+...+||+. | ...+|+ +.|-|+|. .+++++
T Consensus 181 --~~~~~~FD~V~s~~~~~h~~-d-----~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 181 --PFEDGQFDLVWSMESGEHMP-D-----KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred --CCCCCCccEEEECCchhccC-C-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 12233233445556677752 2 345554 45779997 444443
No 46
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=63.36 E-value=38 Score=35.54 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=44.8
Q ss_pred hcCCccchhh-hhhhHHHHH----hhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHH
Q 005954 369 QATPIPKFIH-FTANEMLLR----AFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDR 443 (667)
Q Consensus 369 e~sPf~kFAh-ftANqAILE----A~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~R 443 (667)
...|-.++++ |..|+.|++ .+.-.+.-+|+|+|.|.|. +...|+.+. + ++|||+.+.+.++.+.++
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLERA--A---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHh
Confidence 3456566666 666666654 4443455689999999984 556666652 2 799999988777666554
Q ss_pred H
Q 005954 444 L 444 (667)
Q Consensus 444 L 444 (667)
+
T Consensus 84 ~ 84 (272)
T PRK00274 84 F 84 (272)
T ss_pred h
Confidence 3
No 47
>PRK14968 putative methyltransferase; Provisional
Probab=63.13 E-value=69 Score=30.50 Aligned_cols=43 Identities=7% Similarity=0.107 Sum_probs=32.2
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
.-.|+|+|.+.|. +...|+.+ ..+||+++.+++.++.+.+++.
T Consensus 24 ~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 24 GDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCEEEEEccccCH----HHHHHHhh-----cceEEEEECCHHHHHHHHHHHH
Confidence 3469999999998 55556665 2589999999887777766553
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=62.96 E-value=1.3e+02 Score=30.61 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=36.3
Q ss_pred hHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHH
Q 005954 382 NEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDR 443 (667)
Q Consensus 382 NqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~R 443 (667)
-+.+++.+.....-+|+|+|.|.|. +.+.|+.+ + -++|+|+.+...++...++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCHHHHHHHHhh
Confidence 3445666654444579999999994 55666654 1 4799999988777665544
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=62.65 E-value=1.1e+02 Score=30.58 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=57.0
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecccccccccccc
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLWML 472 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~~L 472 (667)
.-.|+|+|-|.|..=-.+.+ +. |..++|+|+.+.+.++.+.+++ +..+++ ++| +....+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~----~~---~~~~V~giD~s~~~l~~A~~~~----~~~~l~~i~~--~~~d~~~~~~--- 109 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAI----AR---PELKVTLVDSLGKKIAFLREVA----AELGLKNVTV--VHGRAEEFGQ--- 109 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHH----HC---CCCeEEEEeCcHHHHHHHHHHH----HHcCCCCEEE--EeccHhhCCC---
Confidence 34799999999842222222 11 2468999999888777776543 445664 444 3333333321
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeee
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQ 520 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEq 520 (667)
-..=+.|+.|+. ..+.++++.+ +.|+|.-.+++..
T Consensus 110 -~~~fDlV~~~~~------------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 110 -EEKFDVVTSRAV------------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCccEEEEccc------------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123355665541 2345677664 7899997666653
No 50
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=60.36 E-value=85 Score=34.22 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=56.6
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccc
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDR 463 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~ 463 (667)
+|++.+...+.=+|+|+|.|.|. ++..++.+ ++ -+++||+.+...+.+. +...+++... -...+. ...
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~~ml~q~-~~~~~~~~~~-~~v~~~--~~~ 179 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTVLFLCQF-EAVRKLLDND-KRAILE--PLG 179 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCHHHHHHH-HHHHHHhccC-CCeEEE--ECC
Confidence 35554443333489999999997 34444443 22 2789999988766442 2222222111 122222 223
Q ss_pred cccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEee
Q 005954 464 LEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 464 lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvE 519 (667)
++++... ..=++ |-|+..|||. . ...++|+.+ +.|+|.-.++.+
T Consensus 180 ie~lp~~----~~FD~--V~s~gvL~H~-~-----dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 180 IEQLHEL----YAFDT--VFSMGVLYHR-K-----SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHHCCCC----CCcCE--EEEcchhhcc-C-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3444311 11133 3344456664 2 234566655 569999555443
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=60.12 E-value=39 Score=37.76 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc-cccccccccccc
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD-RLEDVRLWMLHV 474 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~-~lE~l~~~~L~i 474 (667)
.|+|+|.|.|. +--.|+.+. |..+||+|+.+...++.+.+.+......-...++|. .. -++++..
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~----- 296 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEP----- 296 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCC-----
Confidence 79999999997 334555542 457999999998888777766643321100133443 22 2222211
Q ss_pred CCCcEEEEEeccchhhcccCCCCChHHHHHH-HHHhcCCcEEEEeee
Q 005954 475 KEKESVAVNCIFQLHKTLYSGNGGVLRDFLG-LIRSTNPTIVLMAEQ 520 (667)
Q Consensus 475 ~~gEaLAVN~~~~LH~lL~des~~~l~~fL~-~IRsL~PkVVVlvEq 520 (667)
..=+.|+.|-.|...+.+.+ .....++. .-+-|+|.-.+.++.
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~---~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTD---NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCH---HHHHHHHHHHHHhcccCCEEEEEE
Confidence 11256777777643222211 12344554 446799996666664
No 52
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=59.94 E-value=96 Score=31.02 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=60.3
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC-ceEEEEecccc-cccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL-PFEFHPVVDRL-EDVRLW 470 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV-pFEF~~V~~~l-E~l~~~ 470 (667)
+.-.|+|+|.|.|.-...|.+.+ |..++|||+.+.+.++.+.+++.. .++ .++| +...+ +.+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-------p~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~--~~~d~~~~l~~- 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-------PDINFIGIEVHEPGVGKALKKIEE----EGLTNLRL--LCGDAVEVLLD- 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-------CCccEEEEEechHHHHHHHHHHHH----cCCCCEEE--EecCHHHHHHH-
Confidence 45679999999997666554432 236899999999888777766543 233 2444 33333 33321
Q ss_pred ccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEe
Q 005954 471 MLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMA 518 (667)
Q Consensus 471 ~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlv 518 (667)
.+.-..=+.|++|.....++...+........+|+.+ +-|+|.-+++.
T Consensus 106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 0111112445555443322111010001235677776 58999754443
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=59.55 E-value=1.9e+02 Score=28.63 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=53.9
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC-ceEEEEeccccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL-PFEFHPVVDRLEDVRLWM 471 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV-pFEF~~V~~~lE~l~~~~ 471 (667)
....|+|+|.+.|. +...|+.. + .++|+|+.+...++...+++.. .++ .+.|.. ..++++....
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~-~----~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~--~d~~~~~~~~ 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL-G----ANVTGIDASEENIEVAKLHAKK----DPLLKIEYRC--TSVEDLAEKG 109 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc-C----CeEEEEeCCHHHHHHHHHHHHH----cCCCceEEEe--CCHHHhhcCC
Confidence 35689999999884 33344442 1 2499999988877776665543 344 344432 2222221110
Q ss_pred cccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEe
Q 005954 472 LHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMA 518 (667)
Q Consensus 472 L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlv 518 (667)
...-+.|+.+ ..||+. .....+|+.+ +.|+|.-++++
T Consensus 110 --~~~~D~i~~~--~~l~~~------~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 110 --AKSFDVVTCM--EVLEHV------PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred --CCCccEEEeh--hHHHhC------CCHHHHHHHHHHhcCCCcEEEE
Confidence 1122343333 345553 2345666665 56888855444
No 54
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=59.30 E-value=22 Score=33.54 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=33.6
Q ss_pred hCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHH
Q 005954 389 FDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDR 443 (667)
Q Consensus 389 ~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~R 443 (667)
-...+..+|||||-|.|.==-.|-..|... .+.++|++|+.+...++..-++
T Consensus 21 ~~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred hccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHH
Confidence 345788999999999985322222233222 2569999999887655444443
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=58.94 E-value=34 Score=36.19 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=70.7
Q ss_pred hhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccc
Q 005954 388 AFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDV 467 (667)
Q Consensus 388 A~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l 467 (667)
-+.-+.---|+|+|.|-|.+=- -|+.|= |-=.||||++|.+.|++..+||- ++.|+- .|+
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~-------aDl 84 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDSSPAMLAKAAQRLP------DATFEE-------ADL 84 (257)
T ss_pred hCCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccCCHHHHHHHHHhCC------CCceec-------ccH
Confidence 3444556789999999997644 444443 23579999999999988777653 333331 122
Q ss_pred ccccccc-CCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeecCCCCCc
Q 005954 468 RLWMLHV-KEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSP 527 (667)
Q Consensus 468 ~~~~L~i-~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqEadhNsp 527 (667)
..| +- .+-..|.-|.+||- |.|. .+-|-+++-.|.|.-+.-|-.-.|+..|
T Consensus 85 ~~w--~p~~~~dllfaNAvlqW---lpdH----~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 85 RTW--KPEQPTDLLFANAVLQW---LPDH----PELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhc--CCCCccchhhhhhhhhh---cccc----HHHHHHHHHhhCCCceEEEECCCccCch
Confidence 222 11 12345666777643 5543 4557788889999988888766665544
No 56
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=58.54 E-value=91 Score=33.81 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=54.5
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccc
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRL 464 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~l 464 (667)
|++.+..-+.-+|+|+|.|.|.. +..++.+ ++. +++||+.+...+.+... ..+++. ...+.+|.. ..+
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~~l~q~~a-~~~~~~-~~~~i~~~~--~d~ 181 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQLFLCQFEA-VRKLLG-NDQRAHLLP--LGI 181 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHHHHHHHHH-HHHhcC-CCCCeEEEe--CCH
Confidence 34454322234799999999953 2344443 222 49999988765532211 112221 122344432 233
Q ss_pred ccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEee
Q 005954 465 EDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 465 E~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvE 519 (667)
+++. . ++-.=+|-|+..|||. . ....+|+.+ +.|+|.-.++.+
T Consensus 182 e~lp-----~-~~~FD~V~s~~vl~H~-~-----dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 182 EQLP-----A-LKAFDTVFSMGVLYHR-R-----SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHCC-----C-cCCcCEEEECChhhcc-C-----CHHHHHHHHHHhcCCCcEEEEE
Confidence 3332 1 1111123344457774 2 234555554 678999666554
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=58.51 E-value=4.5 Score=34.97 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=29.9
Q ss_pred EEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHH
Q 005954 398 IDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSG 446 (667)
Q Consensus 398 IDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~ 446 (667)
+|+|-+.|.==..|++.+ |..++|+++.+...++...+|+.+
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhh
Confidence 478888887666777776 679999999988777666666554
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=58.46 E-value=72 Score=34.56 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=67.3
Q ss_pred hHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEec
Q 005954 382 NEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVV 461 (667)
Q Consensus 382 NqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~ 461 (667)
=..|++-+.=+.--||.|||. .|=.|+...|.+-+ +++|||..|.+-+....+|+. ..|++=..+.+.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGC----GWG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r~~----~~gl~~~v~v~l 128 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGC----GWGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKRIA----ARGLEDNVEVRL 128 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCC----ChhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHHHH----HcCCCcccEEEe
Confidence 344555555567789999865 57789999999874 899999999887777766544 456552233333
Q ss_pred cccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHh-cCCc
Q 005954 462 DRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRS-TNPT 513 (667)
Q Consensus 462 ~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRs-L~Pk 513 (667)
..+.++... -|-+|. +=-++|+-. ...++|++.+++ |+|+
T Consensus 129 ~d~rd~~e~-----fDrIvS---vgmfEhvg~----~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 129 QDYRDFEEP-----FDRIVS---VGMFEHVGK----ENYDDFFKKVYALLKPG 169 (283)
T ss_pred ccccccccc-----cceeee---hhhHHHhCc----ccHHHHHHHHHhhcCCC
Confidence 344444322 122222 222445422 347789988865 7776
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=58.17 E-value=1.6e+02 Score=28.40 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=35.1
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEE
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEF 457 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF 457 (667)
.|+|+|.+.|. +...++.+ ++ ++|+|+.+.+.++.+.+++. ..++..+|
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~----~~~~~~~~ 70 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK----LNNVGLDV 70 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH----HcCCceEE
Confidence 49999999994 55556654 22 89999999988888877764 33454444
No 60
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=57.06 E-value=66 Score=31.98 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=53.5
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccC
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVK 475 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i~ 475 (667)
+|+|+|.+.|. +...++++- |..++|||+.+.+.++...+++. ..|+.-....+....++.. +. .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~----~~gl~~~i~~~~~d~~~~~---~~-~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIR----ALGLQGRIRIFYRDSAKDP---FP-D 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH----hcCCCcceEEEecccccCC---CC-C
Confidence 68999998885 344555443 23689999998887777666543 3455433332322221111 00 1
Q ss_pred CCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEE
Q 005954 476 EKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLM 517 (667)
Q Consensus 476 ~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVl 517 (667)
.=+.| -+...+||+ . ....+|+.+ +-|+|.-.++
T Consensus 67 ~fD~I--~~~~~l~~~-~-----~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 67 TYDLV--FGFEVIHHI-K-----DKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred CCCEe--ehHHHHHhC-C-----CHHHHHHHHHHHcCCCCEEE
Confidence 11222 233445664 2 245677666 5699994443
No 61
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=56.91 E-value=2e+02 Score=31.80 Aligned_cols=100 Identities=8% Similarity=0.026 Sum_probs=53.8
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWML 472 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L 472 (667)
...+|+|+|.+.|.-...+ +.+.++ .++|+|+.+.+.++.+.++.. .-++.| +...++++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~L----a~~~~~---~~VtgVD~S~~mL~~A~~k~~----~~~i~~----i~gD~e~lp~--- 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGI----VKHVDA---KNVTILDQSPHQLAKAKQKEP----LKECKI----IEGDAEDLPF--- 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHH----HHHCCC---CEEEEEECCHHHHHHHHHhhh----ccCCeE----EeccHHhCCC---
Confidence 4568999999999744333 333211 589999998887777665432 123332 2323333321
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHH-HHhcCCcEEEEe
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGL-IRSTNPTIVLMA 518 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~-IRsL~PkVVVlv 518 (667)
.-..=+.|+.|. .||++ .+ ...+|+. .+-|+|.-.+++
T Consensus 175 ~~~sFDvVIs~~--~L~~~-~d-----~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 175 PTDYADRYVSAG--SIEYW-PD-----PQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCceeEEEEcC--hhhhC-CC-----HHHHHHHHHHhcCCCcEEEE
Confidence 111123444443 35553 22 2345554 467999855443
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=56.35 E-value=99 Score=34.45 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHH
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRL 444 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL 444 (667)
..|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+.+++.++.+.++.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHh
Confidence 345555543444589999987774 4455565443 58999999998887776665
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=55.27 E-value=1.1e+02 Score=33.50 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=66.9
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..+++.+.....=+|+|||.|.|. +-..|+.+. |..++|+|+.+...++.+.+++.. .++..+|... +
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~~~-D 253 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVFAS-N 253 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEEEc-c
Confidence 444555543222379999999997 444555542 347899999999888888776643 4555555321 1
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeeec
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQE 521 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEqE 521 (667)
-++.+ -..=+.|+.|-.| |..+. .+......+++.+ +-|+|.-..+...+
T Consensus 254 ~~~~~------~~~fDlIvsNPPF--H~g~~-~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 254 VFSDI------KGRFDMIISNPPF--HDGIQ-TSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccc------CCCccEEEECCCc--cCCcc-ccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 11111 1123667777665 44221 1112345666554 66999855544433
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=53.94 E-value=1.9e+02 Score=28.59 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=54.0
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEeccccccccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLWMLH 473 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~~L~ 473 (667)
-+|+|+|.|.|.-=- .+ +.. . |..++|+|+.+...++.+.++ ++..|++ ++| +...++++..
T Consensus 44 ~~vLDiGcGtG~~s~-~l-a~~-~----~~~~V~~iD~s~~~~~~a~~~----~~~~~~~~i~~--i~~d~~~~~~---- 106 (181)
T TIGR00138 44 KKVIDIGSGAGFPGI-PL-AIA-R----PELKLTLLESNHKKVAFLREV----KAELGLNNVEI--VNGRAEDFQH---- 106 (181)
T ss_pred CeEEEecCCCCccHH-HH-HHH-C----CCCeEEEEeCcHHHHHHHHHH----HHHhCCCCeEE--Eecchhhccc----
Confidence 489999999994211 11 221 1 236799999988776655443 3445664 443 3334444311
Q ss_pred cCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeee
Q 005954 474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQ 520 (667)
Q Consensus 474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEq 520 (667)
...=+.|+.|+ +|. +.+++..+ +-|+|.-++++..
T Consensus 107 ~~~fD~I~s~~---~~~---------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 EEQFDVITSRA---LAS---------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cCCccEEEehh---hhC---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 11224555554 332 34556554 4589997777663
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=50.60 E-value=84 Score=31.17 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 392 KDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 392 ~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
.....|+|+|.+.|.- ...|+.+. .++|||+.+...++.+.+++.
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~~-----~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARRG-----AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHcC-----CEEEEEECCHHHHHHHHHHHH
Confidence 3456899999999953 33444431 349999999988887776654
No 66
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=49.50 E-value=65 Score=34.24 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=67.1
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWML 472 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L 472 (667)
...-|.|+|.|-| .|-+.||..- ..+|||+.+...++.... .|..-|+..+|... ..|++...
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~----ha~e~gv~i~y~~~--~~edl~~~-- 121 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASEKPIEVAKL----HALESGVNIDYRQA--TVEDLASA-- 121 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCChHHHHHHHH----hhhhccccccchhh--hHHHHHhc--
Confidence 4577999999999 7888888753 899999988877766543 46667777777543 23444321
Q ss_pred ccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCc-EEEEeeec
Q 005954 473 HVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPT-IVLMAEQE 521 (667)
Q Consensus 473 ~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~Pk-VVVlvEqE 521 (667)
.+-.=||-|+=-|+|+ +| .+.||+.. +-++|. ++++.--+
T Consensus 122 ---~~~FDvV~cmEVlEHv-~d-----p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 122 ---GGQFDVVTCMEVLEHV-PD-----PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ---CCCccEEEEhhHHHcc-CC-----HHHHHHHHHHHcCCCcEEEEeccc
Confidence 1223367777778885 33 45666654 678887 44444443
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=49.26 E-value=1e+02 Score=30.58 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=59.1
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccc
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLH 473 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~ 473 (667)
.--|+|+|.|.|.= +-.||.+. |...++||+.+...++.+.+++. ..|+. ....+...+.++....+.
T Consensus 17 ~~~ilDiGcG~G~~----~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~----~~~l~-ni~~i~~d~~~~~~~~~~ 84 (194)
T TIGR00091 17 APLHLEIGCGKGRF----LIDMAKQN---PDKNFLGIEIHTPIVLAANNKAN----KLGLK-NLHVLCGDANELLDKFFP 84 (194)
T ss_pred CceEEEeCCCccHH----HHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHH----HhCCC-CEEEEccCHHHHHHhhCC
Confidence 34799999999854 44444442 34689999999888877766654 34443 222233333322111111
Q ss_pred cCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCcEEEEeeec
Q 005954 474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPTIVLMAEQE 521 (667)
Q Consensus 474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~PkVVVlvEqE 521 (667)
-..=+.|++|+..--++--.....-....+|+.+ +-|+|.-.+....+
T Consensus 85 ~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 85 DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 0011345566532111100000001124577765 67899876666544
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=47.99 E-value=2e+02 Score=31.86 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecccccccccccccc
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLWMLHV 474 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~~L~i 474 (667)
+|+|++-|.|. +--.||.+. -+++||+.++..++.+.+.+ +..|+. .+|. ...++++... + .
T Consensus 236 ~vLDL~cG~G~----~~l~la~~~-----~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~~--~~d~~~~~~~-~-~ 298 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGPD-----TQLTGIEIESEAIACAQQSA----QMLGLDNLSFA--ALDSAKFATA-Q-M 298 (374)
T ss_pred EEEEccCCccH----HHHHHhhcC-----CeEEEEECCHHHHHHHHHHH----HHcCCCcEEEE--ECCHHHHHHh-c-C
Confidence 68999988882 333444331 37999999988887776554 344553 4443 3233222111 1 1
Q ss_pred CCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeec
Q 005954 475 KEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQE 521 (667)
Q Consensus 475 ~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqE 521 (667)
..-++|++|=.. .+....++..|..++|+-+|.++-+
T Consensus 299 ~~~D~vi~DPPr----------~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 299 SAPELVLVNPPR----------RGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred CCCCEEEECCCC----------CCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 123667777331 1334678888999999988888754
No 69
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=47.35 E-value=2.2e+02 Score=30.55 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=61.2
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEeccccccccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRLEDVRLWMLH 473 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~lE~l~~~~L~ 473 (667)
-+|+|++-|.|. +--.||.+. -+++||+.+...++.+.+.+ +..|++ .+|. ....+++... .
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~~-----~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~--~~D~~~~~~~-~- 237 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATPG-----MQLTGIEISAEAIACAKQSA----AELGLTNVQFQ--ALDSTQFATA-Q- 237 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhcC-----CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEE--EcCHHHHHHh-c-
Confidence 579999999985 344455531 37999999988887766543 445663 5553 2223222111 0
Q ss_pred cCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeecC
Q 005954 474 VKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEA 522 (667)
Q Consensus 474 i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqEa 522 (667)
...-++|++|=. + .+.-..++..|..++|+-++.+.-+.
T Consensus 238 ~~~~D~Vv~dPP----r------~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 238 GEVPDLVLVNPP----R------RGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CCCCeEEEECCC----C------CCccHHHHHHHHHcCCCeEEEEECCc
Confidence 112356776622 1 12335677888999999888776553
No 70
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=46.69 E-value=1.4e+02 Score=30.34 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..+++++.=...-+|||+|-+.|. +..+|+.+. |+||+|..+.+. .++.+.+ .=..+|.+-
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~-v~~~~~~---------~~rv~~~~g-- 150 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPE-VIEQAKE---------ADRVEFVPG-- 150 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HH-HHCCHHH---------TTTEEEEES--
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHh-hhhcccc---------ccccccccc--
Confidence 445666655555689999999993 334444432 468999998743 2222222 112333221
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH-HhcCCc---EEEEeeecCC
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI-RSTNPT---IVLMAEQEAE 523 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I-RsL~Pk---VVVlvEqEad 523 (667)
.+ - ..+.. .+++.+ ..-||..- | .....+|+.+ +.|+|. .++|.|.=.+
T Consensus 151 d~---f-~~~P~--~D~~~l--~~vLh~~~-d---~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 151 DF---F-DPLPV--ADVYLL--RHVLHDWS-D---EDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp -T---T-TCCSS--ESEEEE--ESSGGGS--H---HHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred cH---H-hhhcc--ccceee--ehhhhhcc-h---HHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 11 0 11111 333333 33456542 2 3455677776 578986 7777776443
No 71
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=45.88 E-value=2.7e+02 Score=28.44 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=65.0
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..|++|+.--+.-.++|+|.|.|.= ---||++- ..+|+|+.+...++. |.+.|+.-+++.+....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~G-----~~VtAvD~s~~al~~----l~~~a~~~~l~i~~~~~-- 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQG-----FDVTAVDISPVALEK----LQRLAEEEGLDIRTRVA-- 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHTT------EEEEEESSHHHHHH----HHHHHHHTT-TEEEEE---
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHCC-----CeEEEEECCHHHHHH----HHHHHhhcCceeEEEEe--
Confidence 4577787766677899999999852 22355542 789999999877654 56678888999666532
Q ss_pred ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHH-hcCCcEEEEe
Q 005954 463 RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIR-STNPTIVLMA 518 (667)
Q Consensus 463 ~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IR-sL~PkVVVlv 518 (667)
.+++. .+. ++.=+|.+..-++++-+ ..+..++..|+ .++|.-+.+.
T Consensus 85 Dl~~~-----~~~-~~yD~I~st~v~~fL~~----~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 85 DLNDF-----DFP-EEYDFIVSTVVFMFLQR----ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp BGCCB-----S-T-TTEEEEEEESSGGGS-G----GGHHHHHHHHHHTEEEEEEEEE
T ss_pred cchhc-----ccc-CCcCEEEEEEEeccCCH----HHHHHHHHHHHhhcCCcEEEEE
Confidence 22222 121 23234445444555432 34566777775 5899744443
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=45.13 E-value=67 Score=28.12 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=30.9
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHH
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSG 446 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~ 446 (667)
+|+|+|.+.|.. ...|+.+. |..++|+|+.+...++.+.+++..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHH
Confidence 899999998864 33334432 237899999998877777665544
No 73
>PRK04148 hypothetical protein; Provisional
Probab=44.66 E-value=70 Score=30.94 Aligned_cols=69 Identities=12% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHH---------------------------
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQEL--------------------------- 437 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L--------------------------- 437 (667)
|.+.+...+...|+|.|+|+|+.=.. .|++. | ..+|+|+.+...+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~---~L~~~-G----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAK---KLKES-G----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHH---HHHHC-C----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCC
Confidence 45555555556899999998864444 44432 2 5788888654321
Q ss_pred --------HHHHHHHHHHHHHcCCceEEEEec
Q 005954 438 --------NETGDRLSGFAEALNLPFEFHPVV 461 (667)
Q Consensus 438 --------~etG~RL~~fA~slgVpFEF~~V~ 461 (667)
.|+..-|.+.|++.|.++-+.++.
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 566677777777777777777664
No 74
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=38.58 E-value=1.1e+02 Score=32.00 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhcCCccchhhhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHH
Q 005954 358 DDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQEL 437 (667)
Q Consensus 358 ~e~~~A~~~f~e~sPf~kFAhftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L 437 (667)
.++..|.+.|.+.-=|-.+... .++.|.+.+. ...-+|+|+|.|.|.--..|.+.+... ....++||+.++..+
T Consensus 52 ~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l 125 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRDA-VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAI 125 (272)
T ss_pred HHHHHHHHHHHHCCChHHHHHH-HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHH
Confidence 4566666666553222222211 1122333332 344679999999997544444443221 125799999998877
Q ss_pred HHHHHH
Q 005954 438 NETGDR 443 (667)
Q Consensus 438 ~etG~R 443 (667)
+.+.++
T Consensus 126 ~~A~~~ 131 (272)
T PRK11088 126 KYAAKR 131 (272)
T ss_pred HHHHHh
Confidence 666443
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=38.45 E-value=2.7e+02 Score=27.88 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=34.2
Q ss_pred CeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc
Q 005954 393 DRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP 454 (667)
Q Consensus 393 ~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp 454 (667)
+..+|+|+|.|.|. +.-.++.+. |..++|||+.+...++.+..++ +..+++
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~----~~~~~~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPEALAVARKNA----ARLGLD 137 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 34689999999993 444444432 3468999999888777666554 345554
No 76
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=36.81 E-value=1e+02 Score=31.25 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=66.7
Q ss_pred CeEEEEEcccc---CCCChHHHHHHHhcCCCCCCeEEE------eeeCCChHHHHHHHHHHHHHHHHcCCceEEEEec-c
Q 005954 393 DRVHIIDFDIK---QGLQWPSFFQSLASRPNPPSHVRI------TGIGESKQELNETGDRLSGFAEALNLPFEFHPVV-D 462 (667)
Q Consensus 393 ~~VHIIDFgI~---~G~QWPsLIQaLA~R~ggPP~LRI------TgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~-~ 462 (667)
.+|+||.|--+ -+-.=-++|.+|+.+. +.+ |+|.. .+....++.-+.+|++..++.|-|.+++ +
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----~~~~~y~~t~~IN~-dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK-----FPPVKYQTTTIINA-DDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC-----CCcccccceEEEEC-ccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 57999999855 3357778999996653 666 78863 3446778889999999999888766553 3
Q ss_pred ccccccccccccCC-CcE-EEEEeccchhhcccCC-CCChHHHHHHHHHhc
Q 005954 463 RLEDVRLWMLHVKE-KES-VAVNCIFQLHKTLYSG-NGGVLRDFLGLIRST 510 (667)
Q Consensus 463 ~lE~l~~~~L~i~~-gEa-LAVN~~~~LH~lL~de-s~~~l~~fL~~IRsL 510 (667)
. +........+.. .++ ++||-.=.+.....-. +...++.++..|+++
T Consensus 133 ~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 133 D-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred C-cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 211112334433 256 5777664443221111 112344566666654
No 77
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=35.83 E-value=2.1e+02 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHH
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRL 444 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL 444 (667)
.|++++...+.=.|+|+|-|.|. |...|+.+.. ++++|+.+.+.++....++
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~~-----~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRAK-----KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhCC-----cEEEEECCHHHHHHHHHHh
Confidence 44555544555689999999997 5566665541 3999998887766655443
No 78
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=33.28 E-value=2.3e+02 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCCC--CeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 409 PSFFQSLASRPNPP--SHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 409 PsLIQaLA~R~ggP--P~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
|.||++|+.+...- .+|.+--|+. .+.|+.++....++++..|.+++|..-.+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~-~~rl~~v~~~~~~~~~~~~~~~~v~~t~d 68 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDE-EEKLEIVGALAKRMVKKAGLPIKVHLTTD 68 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCCh-HHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 58999999975533 4444444444 88999999999999999999998876654
No 79
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=33.11 E-value=4.4e+02 Score=25.27 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=43.1
Q ss_pred eeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHH
Q 005954 428 TGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLI 507 (667)
Q Consensus 428 TgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~I 507 (667)
|||+.+.+-|+...+|....+....-..+|. ....+++ ...++..=+|-+.+.||++ . ....+|+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~--~~d~~~l-----p~~~~~fD~v~~~~~l~~~-~-----d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWI--EGDAIDL-----PFDDCEFDAVTMGYGLRNV-V-----DRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEE--EechhhC-----CCCCCCeeEEEecchhhcC-C-----CHHHHHHHH
Confidence 6899999888877666543222111123332 2223333 2223222234455777775 2 234555555
Q ss_pred -HhcCCc-EEEEeeecC
Q 005954 508 -RSTNPT-IVLMAEQEA 522 (667)
Q Consensus 508 -RsL~Pk-VVVlvEqEa 522 (667)
|-|+|. .+++.|-..
T Consensus 68 ~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 68 YRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHcCcCeEEEEEECCC
Confidence 679998 455566553
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=32.04 E-value=1.2e+02 Score=29.80 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=39.8
Q ss_pred hhhhhHHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHH
Q 005954 378 HFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSG 446 (667)
Q Consensus 378 hftANqAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~ 446 (667)
.--..+.+++.+.-...=.|+|+|-|.|. +... ++... +..+||+|+.+.+.++.+.+++.+
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~~---la~~~---~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGT-IPVE---AGLLC---PKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCH-HHHH---HHHHC---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 33344556666654444479999999997 2222 23221 125899999999888777766653
No 81
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=30.79 E-value=91 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=23.3
Q ss_pred cEEEEEecc-chhhcccCCCCChHHHHHHHHHhcCCcEEEEe
Q 005954 478 ESVAVNCIF-QLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMA 518 (667)
Q Consensus 478 EaLAVN~~~-~LH~lL~des~~~l~~fL~~IRsL~PkVVVlv 518 (667)
|.+-|||.. +++ +-. - ....+++..|+.++|+-++++
T Consensus 1 e~i~v~a~v~~~~-fSg-H--ad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSG-H--ADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESG-CSS-S---BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEe-ecC-C--CCHHHHHHHHHhcCCCEEEEe
Confidence 345677665 333 211 1 346789999999999988887
No 82
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=30.44 E-value=2.3e+02 Score=32.20 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 409 PSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 409 PsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
|.||++|..++..-+--.|+-++-+.+.++.++....++++..|.+++|..-.+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD 67 (425)
T cd05197 14 PELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMD 67 (425)
T ss_pred HHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 689999999986444455666666778888899999999999999998876655
No 83
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=30.09 E-value=6.2e+02 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.0
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHH
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNE 439 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~e 439 (667)
.-.|+|.|.|.|. -+..||.+. ..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~G-----~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQG-----HEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhCC-----CeEEEEccCHHHHHH
Confidence 3578999998883 344456542 689999999887765
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=29.82 E-value=99 Score=31.68 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=39.7
Q ss_pred HHhhCCCCeEEEEEccccCC---CChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHH
Q 005954 386 LRAFDGKDRVHIIDFDIKQG---LQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFA 448 (667)
Q Consensus 386 LEA~eG~~~VHIIDFgI~~G---~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA 448 (667)
|-+++-.+.=|++|+|-+-| ++|. ++ .|..|+++|+.+++.++.+.+++.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 44455444459999999888 4775 21 357999999999999999998877654
No 85
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=29.77 E-value=1.7e+02 Score=31.48 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=34.6
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHH
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSG 446 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~ 446 (667)
|++++.-...=.|+|+|.|.|.-- ..|+.+. -++++|+.+.+.++.+.+++..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECCHHHHHHHHHHHHh
Confidence 334443333447999999988744 4444432 2699999998877777766643
No 86
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=29.66 E-value=2.8e+02 Score=31.26 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=62.6
Q ss_pred HHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc-eEEEEecccc
Q 005954 386 LRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP-FEFHPVVDRL 464 (667)
Q Consensus 386 LEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp-FEF~~V~~~l 464 (667)
++.+.-.+.-+|+|+|.|.|. +--.||.+. -+++||+.+.+.++.+.+++. ..|+. .+|. ...+
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~----~~~~~~v~~~--~~d~ 354 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENAR----RNGLDNVTFY--HANL 354 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH----HcCCCceEEE--EeCh
Confidence 333433344589999999995 333455542 379999999988887766543 34542 4443 2222
Q ss_pred cc-ccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeec
Q 005954 465 ED-VRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQE 521 (667)
Q Consensus 465 E~-l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqE 521 (667)
++ +....+.-..=++|++|=.. ....+++..|.+++|+-++.+.-+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr-----------~g~~~~~~~l~~~~~~~ivyvSCn 401 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPR-----------AGAAEVMQALAKLGPKRIVYVSCN 401 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCC-----------cChHHHHHHHHhcCCCeEEEEEeC
Confidence 21 11000100112455554321 123467788899999988888665
No 87
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=28.88 E-value=2e+02 Score=29.99 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=37.8
Q ss_pred hhhhHHHHH----hhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 379 FTANEMLLR----AFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 379 ftANqAILE----A~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
|..++.|++ ++.-.+.=+|+|+|-|.|. |...|+.+. .++|+|+.+...++...+++.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCHHHHHHHHHHhc
Confidence 444554444 3333344579999999996 445555552 379999999887777666553
No 88
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=28.25 E-value=4.9e+02 Score=27.75 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred CCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEE-Eecccccccc
Q 005954 390 DGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFH-PVVDRLEDVR 468 (667)
Q Consensus 390 eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~-~V~~~lE~l~ 468 (667)
....++-|+..|+|-|.-.+-+ - --|--+||.|+++. .++++..+ .+|+. .|.+|. -|+...|++.
T Consensus 73 gk~~K~~vLEvgcGtG~Nfkfy----~----~~p~~svt~lDpn~-~mee~~~k--s~~E~--k~~~~~~fvva~ge~l~ 139 (252)
T KOG4300|consen 73 GKSGKGDVLEVGCGTGANFKFY----P----WKPINSVTCLDPNE-KMEEIADK--SAAEK--KPLQVERFVVADGENLP 139 (252)
T ss_pred cccCccceEEecccCCCCcccc----c----CCCCceEEEeCCcH-HHHHHHHH--HHhhc--cCcceEEEEeechhcCc
Confidence 3456889999999887432211 0 12568999998764 34444332 33444 555554 3444455443
Q ss_pred ccccccCCCcEEEEEeccchhhcccCCCCChHHHHHHHHHh-cCCc-EEEEeeecCCCCCcchhHHHH
Q 005954 469 LWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRS-TNPT-IVLMAEQEAEHNSPFLETRVS 534 (667)
Q Consensus 469 ~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~~IRs-L~Pk-VVVlvEqEadhNsp~F~~RF~ 534 (667)
.+..+-.=+|-|.|-|-.. ......|+-+|+ |+|. ++++.|+-+.- -.|..|+.
T Consensus 140 ----~l~d~s~DtVV~TlvLCSv------e~~~k~L~e~~rlLRpgG~iifiEHva~~--y~~~n~i~ 195 (252)
T KOG4300|consen 140 ----QLADGSYDTVVCTLVLCSV------EDPVKQLNEVRRLLRPGGRIIFIEHVAGE--YGFWNRIL 195 (252)
T ss_pred ----ccccCCeeeEEEEEEEecc------CCHHHHHHHHHHhcCCCcEEEEEeccccc--chHHHHHH
Confidence 1233333345555555321 234567877765 8998 66666776542 23444443
No 89
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=28.12 E-value=1.9e+02 Score=29.33 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 405 GLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 405 G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
+..||-++..+..+.+.-+.-.|+-++.+.+.|+.++.-..++++..|.+++|..-.+
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd 66 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD 66 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3689988887777766555567777788889999999999999999999999876654
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=27.93 E-value=1.7e+02 Score=25.60 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=57.4
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecccccccccccccc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHV 474 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~lE~l~~~~L~i 474 (667)
.+|+|.+.|.|.-=..+++.. ..+++||+-++..++-+..++.. .++.-+++.+...+.++. ..+.-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~----~~~~~~~~~~~~D~~~~~-~~~~~ 68 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR----NGLDDRVEVIVGDARDLP-EPLPD 68 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH----CTTTTTEEEEESHHHHHH-HTCTT
T ss_pred CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH----ccCCceEEEEECchhhch-hhccC
Confidence 479999999997443333332 47899999998877766665544 444322333333332222 11223
Q ss_pred CCCcEEEEEeccchhhcccCCCCChHHHHH-HHHHhcCCcEEEEe
Q 005954 475 KEKESVAVNCIFQLHKTLYSGNGGVLRDFL-GLIRSTNPTIVLMA 518 (667)
Q Consensus 475 ~~gEaLAVN~~~~LH~lL~des~~~l~~fL-~~IRsL~PkVVVlv 518 (667)
..=+.|+.|-.+.-+.............|+ ...+-|+|.-++.+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344677788777432111111011223455 44567888855543
No 91
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=27.78 E-value=1.4e+02 Score=31.55 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCc
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLP 454 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVp 454 (667)
.+|+|+|.|.|.--..|.+.+ |..+||+|+.+...++.+.+++ +.+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-------~~~~v~avDis~~al~~a~~n~----~~~~~~ 164 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-------PNAEVIAVDISPDALAVAEENA----EKNQLE 164 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 589999999995444443332 2368999999988887766653 445554
No 92
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.87 E-value=1.3e+02 Score=30.03 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 384 MLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 384 AILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
.+++++.-...-+|+|+|-|.|..=..|.+.+. . .-++++|+.+++.++.+.++|.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~-~-----~g~V~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE-R-----RGKVYTVEIVKELAIYAAQNIE 118 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC-C-----CCEEEEEeCCHHHHHHHHHHHH
Confidence 355666544556799999988875444444331 1 1379999999888877777664
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=26.50 E-value=1.4e+02 Score=30.52 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 390 DGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 390 eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
...+..+|+|+|.|.|.=-..|.+.+ |..++|+++.+...++.+.+++.
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-------~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-------PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-------CCCEEEEEECCHHHHHHHHHHHH
Confidence 33456789999999995333333332 34689999999888877776654
No 94
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=26.43 E-value=7.6e+02 Score=25.82 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=57.9
Q ss_pred EEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC-ceEEEEecccccccccccccc
Q 005954 396 HIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL-PFEFHPVVDRLEDVRLWMLHV 474 (667)
Q Consensus 396 HIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV-pFEF~~V~~~lE~l~~~~L~i 474 (667)
+|+|+|.+.|. +...+..+. +.-++|+|+.+...++...+.+......+.- .+++.. .+-.+-+.. . -
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~--~-~ 143 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD--T-E 143 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE-CchHHHHHh--C-C
Confidence 89999998886 334444433 2357999999888777777766555432221 233321 111111110 0 1
Q ss_pred CCCcEEEEEeccchhhcccCCCCCh--HHHHHHHH-HhcCCcEEEEee
Q 005954 475 KEKESVAVNCIFQLHKTLYSGNGGV--LRDFLGLI-RSTNPTIVLMAE 519 (667)
Q Consensus 475 ~~gEaLAVN~~~~LH~lL~des~~~--l~~fL~~I-RsL~PkVVVlvE 519 (667)
+.=++|+++.....+ . ... ..+|++.+ +.|+|.-++++.
T Consensus 144 ~~yDvIi~D~~~~~~-----~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 144 NTFDVIIVDSTDPVG-----P-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCccEEEEeCCCCCC-----c-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 223566666542211 0 011 24677665 569999777775
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=25.39 E-value=1.4e+02 Score=32.27 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCccchhhhhhhHHHHHhh--CCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHH
Q 005954 359 DSGAALRLLNQATPIPKFIHFTANEMLLRAF--DGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQE 436 (667)
Q Consensus 359 e~~~A~~~f~e~sPf~kFAhftANqAILEA~--eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~ 436 (667)
+..-.+..|..-+ +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.+.. ..+||+|+.+...
T Consensus 29 ~~~~v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~a 100 (279)
T PHA03411 29 EKEFCYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEF 100 (279)
T ss_pred cHHHHHHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHH
Confidence 3344455555555 66678888888888553 23334579999999994 3334444422 2689999998876
Q ss_pred HHHHHH
Q 005954 437 LNETGD 442 (667)
Q Consensus 437 L~etG~ 442 (667)
++...+
T Consensus 101 l~~Ar~ 106 (279)
T PHA03411 101 ARIGKR 106 (279)
T ss_pred HHHHHH
Confidence 665544
No 96
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=25.33 E-value=1.1e+02 Score=30.30 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=45.3
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHcccCCCCCChhhhHHHHHHHHHHHhhcc
Q 005954 285 LVRLLTDCV-EAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSR 339 (667)
Q Consensus 285 Lv~LLl~CA-eAV~~gd~~~A~~lL~~L~~laSp~Gd~~QRLA~YFaeAL~~RL~~ 339 (667)
+..+|+.+. ..+..++...|..++..|..+..|..+...|+...|.+||..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 456666655 7788889999999999999998887788899999999998764443
No 97
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=24.57 E-value=94 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCCeEEEEEccccCCCChHHHHHHHhc
Q 005954 390 DGKDRVHIIDFDIKQGLQWPSFFQSLAS 417 (667)
Q Consensus 390 eG~~~VHIIDFgI~~G~QWPsLIQaLA~ 417 (667)
.|.+.+||||+|-+.+.+ -.+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 556777776
No 98
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=24.52 E-value=1.5e+02 Score=33.77 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEeccc
Q 005954 409 PSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDR 463 (667)
Q Consensus 409 PsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~~ 463 (667)
|.||+.|.+++..-+--.|+-++-+.+.|+.++....++++..|.+++|..-.++
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr 68 (437)
T cd05298 14 PGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDP 68 (437)
T ss_pred HHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCH
Confidence 6899999999753333445555667788888999999999999999998877653
No 99
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=24.39 E-value=3.2e+02 Score=31.22 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred cEEEEEeccchhhcccCCCCChHHHHHHHHHhcCCcEEEEeeecCCCCCcchhHHHHHHHHHHHHHHHHhhhhCCCCcHH
Q 005954 478 ESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYSLPLDSPV 557 (667)
Q Consensus 478 EaLAVN~~~~LH~lL~des~~~l~~fL~~IRsL~PkVVVlvEqEadhNsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~e 557 (667)
+.++||+.=..+ .. ..+.--..+|...+|++|+..|.+- ...++.+=.++..| ....+...++.-.+
T Consensus 173 ~~ilIdT~GWi~----G~--~g~elk~~li~~ikP~~Ii~l~~~~---~~~~l~~~~~~~~~----~~~~~~~~~~sR~E 239 (398)
T COG1341 173 DFILIDTDGWIK----GW--GGLELKRALIDAIKPDLIIALERAN---ELSPLLEGVESIVY----LKVPDAVAPRSREE 239 (398)
T ss_pred CEEEEcCCCcee----Cc--hHHHHHHHHHhhcCCCEEEEecccc---ccchhhhcccCceE----EeccccccccChhH
Confidence 345677654432 11 2344556778999999999998873 23322232333333 23333444555556
Q ss_pred HHHHHH-Hhhhhhh
Q 005954 558 RIKIEE-MFAREVR 570 (667)
Q Consensus 558 R~~iE~-~fgrEI~ 570 (667)
|..+-. -+.|.+.
T Consensus 240 R~~~R~e~~~ryf~ 253 (398)
T COG1341 240 RKELREEKYRRYFE 253 (398)
T ss_pred HHHHHHHHHHHhcc
Confidence 554432 2444443
No 100
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=24.03 E-value=1.1e+02 Score=33.69 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=42.9
Q ss_pred HHHHhhCC---CCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCC
Q 005954 384 MLLRAFDG---KDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNL 453 (667)
Q Consensus 384 AILEA~eG---~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgV 453 (667)
+++|++.. .+.-||.|+|.|.|.-=-+|+..|. .-|+|+|+-++..+.-++++ |+++++
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La~eN----~qr~~l 197 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLAKEN----AQRLKL 197 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHHHHH----HHHHhh
Confidence 34555543 3455899999999987777777774 48999999998888777665 444444
No 101
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=23.05 E-value=1.8e+02 Score=28.25 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 386 LRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 386 LEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
++.+.-...-.|+|+|-|.|. +.-.++.+. |..+||+|+.+...++.+.+++.
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~----~~~~la~~~---~~~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGS----VSIEAALQF---PSLQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 344432333479999999884 223333331 24789999999887777665554
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=23.04 E-value=7.8e+02 Score=24.74 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=28.7
Q ss_pred EEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHH
Q 005954 395 VHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRL 444 (667)
Q Consensus 395 VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL 444 (667)
-+|+|+|.|.|.- .. .++.. + .-+||+|+.+...++.+.+++
T Consensus 38 ~~vLDlGcG~G~~-~~---~la~~--~--~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 38 RRVLDLCTGSGAL-AV---AAAAA--G--AGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CeEEEecCCHHHH-HH---HHHHc--C--CCeEEEEECCHHHHHHHHHHH
Confidence 5899999999873 22 23333 1 148999999888776665544
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=22.45 E-value=1.9e+02 Score=28.70 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=36.3
Q ss_pred HHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHH
Q 005954 385 LLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGF 447 (667)
Q Consensus 385 ILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~f 447 (667)
+++.+.-...-.|+|+|.+.|.... +|..+. + ++++|+.+.+.++...+++.++
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 3455555556789999999997443 333332 1 6999999877777776666543
No 104
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=21.40 E-value=53 Score=36.87 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=10.7
Q ss_pred CCCeEEEEEcccc
Q 005954 391 GKDRVHIIDFDIK 403 (667)
Q Consensus 391 G~~~VHIIDFgI~ 403 (667)
.+..|||||||+.
T Consensus 164 ~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 164 DANVIHIIDFGMA 176 (449)
T ss_pred CCceEEEEeccch
Confidence 3568999999985
No 105
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=21.34 E-value=7.3e+02 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=26.6
Q ss_pred eEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHH
Q 005954 394 RVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNE 439 (667)
Q Consensus 394 ~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~e 439 (667)
.-.|+|+|.|.|. =...||.+- ..+|||+.+...++.
T Consensus 35 ~~rvLd~GCG~G~----da~~LA~~G-----~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSL----DLAWLAEQG-----HRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchh----HHHHHHhCC-----CeEEEEeCCHHHHHH
Confidence 3489999999883 233455542 689999999887763
No 106
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=21.17 E-value=1.1e+02 Score=29.64 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHHHHHHcCCceEEEEecc
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVD 462 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~fA~slgVpFEF~~V~~ 462 (667)
..+++.+...+.=+|+|+|.|.|.-=- .|+.+ -|..++|+++.+...++-+.+. ++..++.- ++.+..
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~----~la~~---~~~~~v~~vDi~~~a~~~a~~n----~~~n~~~~-v~~~~~ 88 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISL----ALAKR---GPDAKVTAVDINPDALELAKRN----AERNGLEN-VEVVQS 88 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHH----HHHHT---STCEEEEEEESBHHHHHHHHHH----HHHTTCTT-EEEEES
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHH----HHHHh---CCCCEEEEEcCCHHHHHHHHHH----HHhcCccc-cccccc
Confidence 345555544455679999999995322 33333 2468899999998888766655 34456652 333332
Q ss_pred -ccccccccccccCCCcEEEEEeccchhhcccCCCCChHHHHHH-HHHhcCCcEEEE
Q 005954 463 -RLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLG-LIRSTNPTIVLM 517 (667)
Q Consensus 463 -~lE~l~~~~L~i~~gEaLAVN~~~~LH~lL~des~~~l~~fL~-~IRsL~PkVVVl 517 (667)
-++.+. -..=+.|+.|=.+ |.-. ++....+++|+. .-+-|+|.-..+
T Consensus 89 d~~~~~~-----~~~fD~Iv~NPP~--~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 89 DLFEALP-----DGKFDLIVSNPPF--HAGG-DDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp STTTTCC-----TTCEEEEEE---S--BTTS-HCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccc-----ccceeEEEEccch--hccc-ccchhhHHHHHHHHHHhccCCCEEE
Confidence 223222 1122566777653 3211 110012455554 446799986553
No 107
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=21.17 E-value=1.6e+02 Score=31.94 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHhhCCCCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHHH
Q 005954 383 EMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSG 446 (667)
Q Consensus 383 qAILEA~eG~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~~ 446 (667)
+.+++++.-...-.+||...|.|..=-.+++.+ ++..+++||+.+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356677754444479999999998777777665 3357899999999999999988855
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=20.77 E-value=2.3e+02 Score=29.23 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=38.3
Q ss_pred hhhhhHHHHHhhCC--CCeEEEEEccccCCCChHHHHHHHhcCCCCCCeEEEeeeCCChHHHHHHHHHHH
Q 005954 378 HFTANEMLLRAFDG--KDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLS 445 (667)
Q Consensus 378 hftANqAILEA~eG--~~~VHIIDFgI~~G~QWPsLIQaLA~R~ggPP~LRITgI~~s~~~L~etG~RL~ 445 (667)
|..+....++++.. ...-.|+|+|.|.|. |.-.++.. ++. +|+||+.+...++.+.+++.
T Consensus 102 ~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 102 THPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH
Confidence 33344556666542 234579999999984 33344433 232 59999999988887776543
Done!