Query 005955
Match_columns 667
No_of_seqs 351 out of 2597
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 16:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1E-137 3E-142 1011.4 65.0 633 31-667 31-663 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 7E-105 2E-109 897.6 78.1 613 36-650 4-619 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 7E-102 1E-106 864.7 75.1 610 25-650 16-630 (657)
4 PRK13411 molecular chaperone D 100.0 4E-101 9E-106 865.7 77.1 600 35-650 1-606 (653)
5 PRK13410 molecular chaperone D 100.0 1E-100 2E-105 859.2 73.7 599 35-645 1-607 (668)
6 PTZ00400 DnaK-type molecular c 100.0 2E-100 3E-105 861.5 75.0 599 33-650 38-642 (663)
7 PRK00290 dnaK molecular chaper 100.0 4E-100 1E-104 859.4 78.5 612 35-666 1-619 (627)
8 PLN03184 chloroplast Hsp70; Pr 100.0 1.3E-99 3E-104 853.9 77.7 597 36-650 39-641 (673)
9 KOG0101 Molecular chaperones H 100.0 1E-100 2E-105 813.7 52.3 614 33-652 4-619 (620)
10 CHL00094 dnaK heat shock prote 100.0 3E-97 7E-102 833.4 75.1 593 35-645 1-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 6.9E-97 1E-101 831.4 75.7 589 37-644 1-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 6.7E-95 1.5E-99 809.0 75.6 584 38-646 1-586 (599)
13 PRK05183 hscA chaperone protei 100.0 5.5E-94 1.2E-98 803.0 73.2 583 36-646 19-602 (616)
14 PF00012 HSP70: Hsp70 protein; 100.0 3.8E-92 8.3E-97 801.6 65.7 597 38-645 1-602 (602)
15 KOG0102 Molecular chaperones m 100.0 2.8E-93 6E-98 724.7 48.0 600 35-649 26-631 (640)
16 PRK01433 hscA chaperone protei 100.0 5.7E-90 1.2E-94 763.2 68.6 551 35-638 18-572 (595)
17 KOG0103 Molecular chaperones H 100.0 8.1E-89 1.7E-93 713.1 51.7 597 37-645 2-646 (727)
18 COG0443 DnaK Molecular chapero 100.0 5.7E-87 1.2E-91 734.7 60.5 573 35-645 4-578 (579)
19 KOG0104 Molecular chaperones G 100.0 3.6E-81 7.8E-86 655.8 54.8 616 11-646 4-738 (902)
20 PRK11678 putative chaperone; P 100.0 3.9E-53 8.5E-58 453.5 38.3 336 38-411 2-447 (450)
21 PRK13928 rod shape-determining 100.0 1.4E-37 3E-42 326.6 32.6 307 39-412 6-324 (336)
22 PRK13929 rod-share determining 100.0 8.1E-37 1.7E-41 319.6 32.2 306 37-409 5-324 (335)
23 PRK13927 rod shape-determining 100.0 2.7E-34 5.8E-39 302.2 33.9 307 37-411 6-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 2.6E-34 5.7E-39 301.6 32.3 306 39-411 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1.2E-33 2.7E-38 297.6 31.9 307 38-411 10-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.1E-32 2.4E-37 281.0 21.3 304 38-410 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 6.9E-30 1.5E-34 249.1 25.4 310 37-413 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 3.2E-29 7E-34 248.3 23.8 202 148-407 37-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 3.6E-26 7.8E-31 230.7 26.9 202 150-409 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.3E-22 2.7E-27 216.3 24.3 195 185-408 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 6.7E-22 1.4E-26 213.0 26.7 194 189-410 169-387 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.5E-18 5.5E-23 179.9 26.0 198 187-412 166-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 8.7E-16 1.9E-20 164.1 17.1 299 39-411 2-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.6 5.8E-15 1.3E-19 157.9 14.8 300 37-411 2-347 (373)
35 COG4820 EutJ Ethanolamine util 99.6 4.8E-15 1E-19 134.4 10.8 197 155-409 76-272 (277)
36 PRK13917 plasmid segregation p 99.6 2E-13 4.2E-18 143.1 24.6 209 171-414 109-339 (344)
37 PTZ00280 Actin-related protein 99.5 3.1E-12 6.8E-17 138.3 24.7 223 150-386 81-336 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.4 2.2E-11 4.9E-16 126.9 20.8 206 171-409 101-318 (320)
39 TIGR01175 pilM type IV pilus a 99.4 9.3E-11 2E-15 124.3 23.6 179 185-409 142-347 (348)
40 PF00022 Actin: Actin; InterP 99.3 1.6E-11 3.6E-16 132.4 16.5 311 36-412 4-368 (393)
41 PTZ00452 actin; Provisional 99.3 1.2E-10 2.6E-15 123.8 22.4 300 36-410 5-348 (375)
42 PTZ00281 actin; Provisional 99.3 3.3E-11 7.1E-16 128.5 17.4 236 151-411 81-350 (376)
43 PTZ00004 actin-2; Provisional 99.3 8.9E-11 1.9E-15 125.4 20.3 236 150-410 80-351 (378)
44 PF11104 PilM_2: Type IV pilus 99.3 4.6E-11 9.9E-16 125.8 16.7 179 185-409 135-339 (340)
45 PTZ00466 actin-like protein; P 99.2 4.4E-10 9.5E-15 119.6 19.9 235 150-410 86-353 (380)
46 PF06406 StbA: StbA protein; 99.1 3.8E-10 8.3E-15 117.3 12.7 174 201-406 141-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 99.0 1.8E-08 3.9E-13 101.1 18.7 170 204-408 73-248 (248)
48 COG4972 PilM Tfp pilus assembl 98.9 4E-07 8.8E-12 90.4 23.7 155 187-386 150-311 (354)
49 KOG0679 Actin-related protein 98.9 3.7E-08 8.1E-13 98.9 15.6 117 150-276 85-202 (426)
50 TIGR03192 benz_CoA_bzdQ benzoy 98.7 9.5E-07 2.1E-11 88.5 19.3 180 204-411 106-288 (293)
51 COG5277 Actin and related prot 98.7 3.9E-07 8.5E-12 97.7 17.0 126 141-276 77-204 (444)
52 TIGR03286 methan_mark_15 putat 98.7 1.2E-06 2.6E-11 91.2 19.1 71 335-410 331-402 (404)
53 PRK10331 L-fuculokinase; Provi 98.7 4.6E-06 9.9E-11 92.1 24.1 80 329-415 358-440 (470)
54 COG1924 Activator of 2-hydroxy 98.6 5.1E-06 1.1E-10 84.3 19.3 179 204-411 211-390 (396)
55 TIGR02628 fuculo_kin_coli L-fu 98.6 6.7E-06 1.5E-10 90.6 21.8 84 328-415 361-444 (465)
56 PRK15027 xylulokinase; Provisi 98.6 1.1E-05 2.3E-10 89.6 23.4 83 329-415 356-438 (484)
57 PRK10719 eutA reactivating fac 98.6 3.3E-07 7.2E-12 96.5 10.6 87 173-267 89-183 (475)
58 PF07520 SrfB: Virulence facto 98.5 1.4E-05 3.1E-10 91.0 24.1 326 81-413 330-836 (1002)
59 TIGR02259 benz_CoA_red_A benzo 98.5 4.8E-06 1E-10 85.6 16.6 179 204-409 249-432 (432)
60 TIGR02261 benz_CoA_red_D benzo 98.5 1.4E-05 3E-10 79.1 19.3 72 335-409 187-262 (262)
61 COG1070 XylB Sugar (pentulose 98.5 1.1E-05 2.4E-10 89.6 21.0 80 330-413 371-450 (502)
62 TIGR01314 gntK_FGGY gluconate 98.4 8.9E-05 1.9E-09 82.7 25.4 75 335-414 373-451 (505)
63 PLN02295 glycerol kinase 98.3 8.4E-05 1.8E-09 82.9 21.6 79 335-415 379-463 (512)
64 PRK13317 pantothenate kinase; 98.3 0.00016 3.6E-09 73.1 21.4 48 363-410 223-273 (277)
65 PTZ00294 glycerol kinase-like 98.2 0.00015 3.3E-09 80.8 23.0 78 336-415 379-457 (504)
66 TIGR01311 glycerol_kin glycero 98.2 0.00022 4.9E-09 79.2 23.3 79 335-415 371-450 (493)
67 PRK00047 glpK glycerol kinase; 98.2 0.00015 3.3E-09 80.7 21.2 79 335-415 375-454 (498)
68 KOG0676 Actin and related prot 98.1 9.4E-05 2E-09 76.8 15.8 208 154-386 82-314 (372)
69 PF08841 DDR: Diol dehydratase 98.0 7.7E-05 1.7E-09 72.5 12.5 192 194-409 104-329 (332)
70 COG4457 SrfB Uncharacterized p 97.6 0.016 3.4E-07 63.0 23.4 82 325-412 743-847 (1014)
71 PF06277 EutA: Ethanolamine ut 97.6 0.00032 7E-09 74.3 10.0 87 174-265 87-178 (473)
72 KOG0677 Actin-related protein 97.4 0.005 1.1E-07 59.2 14.8 196 170-386 99-318 (389)
73 COG1069 AraB Ribulose kinase [ 97.3 0.011 2.3E-07 63.5 17.1 215 189-415 232-482 (544)
74 KOG0797 Actin-related protein 97.3 0.0035 7.7E-08 65.9 12.7 120 146-274 196-321 (618)
75 PF02782 FGGY_C: FGGY family o 97.1 0.00066 1.4E-08 65.6 5.2 76 334-411 120-196 (198)
76 PF01869 BcrAD_BadFG: BadF/Bad 97.1 0.11 2.5E-06 52.8 21.6 72 335-409 196-271 (271)
77 PRK10854 exopolyphosphatase; P 97.1 0.027 5.8E-07 62.7 18.0 77 187-269 98-176 (513)
78 TIGR00555 panK_eukar pantothen 97.1 0.043 9.3E-07 55.4 17.7 47 361-407 229-278 (279)
79 PRK04123 ribulokinase; Provisi 97.0 0.019 4E-07 64.9 16.6 77 330-414 409-489 (548)
80 TIGR01234 L-ribulokinase L-rib 97.0 0.028 6.1E-07 63.2 17.3 82 329-415 405-487 (536)
81 TIGR01312 XylB D-xylulose kina 96.9 0.043 9.4E-07 60.9 18.4 79 335-415 362-441 (481)
82 PRK11031 guanosine pentaphosph 96.7 0.083 1.8E-06 58.6 17.9 77 187-269 93-171 (496)
83 TIGR01315 5C_CHO_kinase FGGY-f 96.7 0.0042 9E-08 69.9 7.8 86 328-415 409-494 (541)
84 PLN02669 xylulokinase 96.6 0.0062 1.3E-07 68.5 8.4 72 337-411 421-492 (556)
85 KOG0680 Actin-related protein 96.2 0.12 2.7E-06 51.7 13.8 97 173-274 94-198 (400)
86 smart00842 FtsA Cell division 96.0 0.021 4.5E-07 54.6 7.4 30 186-215 157-186 (187)
87 TIGR02627 rhamnulo_kin rhamnul 95.9 0.029 6.3E-07 61.8 9.1 81 329-415 356-437 (454)
88 COG0248 GppA Exopolyphosphatas 95.8 0.17 3.6E-06 55.5 14.1 58 187-244 90-148 (492)
89 PRK10640 rhaB rhamnulokinase; 95.8 0.036 7.8E-07 61.2 9.2 80 330-415 345-425 (471)
90 PRK10939 autoinducer-2 (AI-2) 95.7 0.034 7.5E-07 62.3 8.7 77 330-414 379-459 (520)
91 KOG2517 Ribulose kinase and re 95.6 0.042 9.1E-07 59.5 8.3 80 334-415 385-465 (516)
92 PF14574 DUF4445: Domain of un 95.6 0.2 4.2E-06 53.6 13.2 86 323-409 289-375 (412)
93 KOG2531 Sugar (pentulose and h 95.2 0.055 1.2E-06 56.7 7.2 56 354-411 434-489 (545)
94 TIGR03706 exo_poly_only exopol 95.1 0.28 6.2E-06 50.6 12.5 74 189-268 89-163 (300)
95 PF14450 FtsA: Cell division p 95.1 0.057 1.2E-06 47.4 6.2 46 227-272 1-51 (120)
96 KOG0681 Actin-related protein 94.6 0.31 6.7E-06 52.3 11.2 123 147-274 91-214 (645)
97 PF01968 Hydantoinase_A: Hydan 94.0 0.15 3.3E-06 52.3 7.2 43 200-243 53-95 (290)
98 PF13941 MutL: MutL protein 93.9 1.1 2.4E-05 48.5 13.9 42 38-85 2-45 (457)
99 COG4819 EutA Ethanolamine util 93.9 0.4 8.7E-06 48.3 9.7 87 174-265 89-180 (473)
100 PRK09604 UGMP family protein; 93.8 8.6 0.00019 40.3 20.1 49 362-410 254-307 (332)
101 COG0554 GlpK Glycerol kinase [ 92.4 0.4 8.6E-06 51.2 7.5 78 335-414 374-452 (499)
102 PRK09698 D-allose kinase; Prov 92.1 16 0.00034 37.6 19.8 38 197-235 103-140 (302)
103 PRK09557 fructokinase; Reviewe 92.1 16 0.00035 37.6 21.0 49 361-409 243-299 (301)
104 PRK14878 UGMP family protein; 92.0 12 0.00026 39.0 18.0 24 363-386 242-265 (323)
105 COG1548 Predicted transcriptio 91.2 2.5 5.5E-05 41.3 10.8 74 156-244 75-149 (330)
106 KOG0681 Actin-related protein 91.2 0.24 5.1E-06 53.2 4.3 49 363-411 559-614 (645)
107 PF02541 Ppx-GppA: Ppx/GppA ph 90.4 0.36 7.8E-06 49.5 4.8 74 190-269 76-151 (285)
108 PF07318 DUF1464: Protein of u 90.0 4.3 9.4E-05 42.0 12.0 71 340-415 242-319 (343)
109 PTZ00340 O-sialoglycoprotein e 89.8 29 0.00062 36.4 19.3 91 171-268 70-164 (345)
110 PTZ00297 pantothenate kinase; 89.6 12 0.00027 46.9 17.7 49 361-409 1390-1444(1452)
111 PRK09585 anmK anhydro-N-acetyl 89.6 3.1 6.8E-05 43.8 11.0 72 336-411 263-338 (365)
112 TIGR03723 bact_gcp putative gl 89.6 28 0.00061 36.1 21.1 45 362-406 259-308 (314)
113 PF03702 UPF0075: Uncharacteri 88.4 1.5 3.2E-05 46.3 7.6 75 334-411 259-337 (364)
114 PLN02666 5-oxoprolinase 87.7 9.4 0.0002 47.1 14.7 76 330-409 455-532 (1275)
115 PRK03011 butyrate kinase; Prov 87.6 6.2 0.00013 41.7 11.7 47 362-408 295-344 (358)
116 PF02543 CmcH_NodU: Carbamoylt 86.8 19 0.00042 38.1 14.9 81 328-413 132-215 (360)
117 COG2377 Predicted molecular ch 86.1 8.1 0.00018 40.2 11.0 54 359-412 287-344 (371)
118 PRK14101 bifunctional glucokin 85.8 16 0.00034 42.2 14.8 73 337-410 244-329 (638)
119 TIGR00744 ROK_glcA_fam ROK fam 85.2 50 0.0011 34.2 20.0 92 149-242 33-140 (318)
120 PLN02920 pantothenate kinase 1 84.3 5.3 0.00012 42.1 9.0 50 361-410 296-351 (398)
121 PTZ00107 hexokinase; Provision 83.5 76 0.0016 34.9 23.5 64 180-243 189-255 (464)
122 KOG1385 Nucleoside phosphatase 82.2 5.7 0.00012 41.8 8.0 159 33-243 64-231 (453)
123 TIGR03281 methan_mark_12 putat 81.9 7.4 0.00016 39.4 8.5 50 363-415 263-315 (326)
124 COG2971 Predicted N-acetylgluc 81.2 67 0.0015 32.7 20.0 65 340-412 227-292 (301)
125 PRK09605 bifunctional UGMP fam 79.3 1.1E+02 0.0025 34.3 26.6 51 363-413 246-301 (535)
126 TIGR00329 gcp_kae1 metallohydr 78.5 40 0.00087 34.8 13.2 36 346-386 247-282 (305)
127 PLN02914 hexokinase 78.4 1.1E+02 0.0025 33.7 21.6 58 184-244 204-263 (490)
128 PRK00976 hypothetical protein; 78.1 16 0.00034 37.8 9.7 51 362-415 263-315 (326)
129 PF00370 FGGY_N: FGGY family o 77.8 2.1 4.5E-05 42.7 3.4 20 37-56 1-20 (245)
130 COG0533 QRI7 Metal-dependent p 77.3 96 0.0021 32.3 15.4 51 331-386 231-285 (342)
131 COG0145 HyuA N-methylhydantoin 76.5 3.1 6.8E-05 47.6 4.6 41 202-243 255-296 (674)
132 PRK09343 prefoldin subunit bet 76.3 50 0.0011 28.9 11.2 57 594-654 63-120 (121)
133 smart00732 YqgFc Likely ribonu 76.2 2.4 5.2E-05 35.3 2.8 19 37-55 2-20 (99)
134 TIGR00143 hypF [NiFe] hydrogen 74.2 6.9 0.00015 45.4 6.7 49 362-410 658-711 (711)
135 COG5026 Hexokinase [Carbohydra 73.9 25 0.00053 37.5 9.9 27 34-60 73-102 (466)
136 PF03652 UPF0081: Uncharacteri 72.0 4.1 8.9E-05 36.5 3.4 21 36-56 1-21 (135)
137 PRK10939 autoinducer-2 (AI-2) 69.9 3.8 8.3E-05 45.9 3.4 22 35-56 2-23 (520)
138 PF08735 DUF1786: Putative pyr 68.9 42 0.0009 33.4 9.7 71 169-242 111-184 (254)
139 COG1940 NagC Transcriptional r 68.2 43 0.00094 34.6 10.6 23 33-55 3-25 (314)
140 PF14450 FtsA: Cell division p 66.7 9.7 0.00021 33.2 4.6 20 38-57 1-20 (120)
141 PF13941 MutL: MutL protein 66.5 51 0.0011 36.0 10.8 46 227-272 2-48 (457)
142 PLN02362 hexokinase 66.5 34 0.00073 38.0 9.6 55 186-243 206-262 (509)
143 PRK00109 Holliday junction res 64.4 6.9 0.00015 35.2 3.2 22 35-56 3-24 (138)
144 cd06007 R3H_DEXH_helicase R3H 64.2 24 0.00052 26.5 5.5 30 174-203 16-45 (59)
145 COG4012 Uncharacterized protei 63.9 28 0.0006 34.5 7.2 67 203-273 207-273 (342)
146 PRK04123 ribulokinase; Provisi 63.4 6.7 0.00015 44.3 3.7 19 36-54 3-21 (548)
147 COG2192 Predicted carbamoyl tr 61.5 2.7E+02 0.0058 31.0 22.9 80 329-413 256-337 (555)
148 PLN02405 hexokinase 61.4 62 0.0013 35.8 10.4 58 184-244 204-263 (497)
149 TIGR01234 L-ribulokinase L-rib 61.3 7.7 0.00017 43.7 3.6 18 37-54 2-19 (536)
150 COG0816 Predicted endonuclease 60.6 8.5 0.00019 34.6 3.0 21 36-56 2-22 (141)
151 PF14574 DUF4445: Domain of un 56.3 59 0.0013 35.0 9.0 53 334-386 55-107 (412)
152 PRK13310 N-acetyl-D-glucosamin 55.2 1.3E+02 0.0027 30.9 11.2 49 361-409 244-300 (303)
153 PRK13331 pantothenate kinase; 54.2 16 0.00035 36.5 4.1 26 32-57 3-28 (251)
154 COG3426 Butyrate kinase [Energ 54.0 37 0.00079 34.1 6.3 50 358-407 292-344 (358)
155 TIGR01315 5C_CHO_kinase FGGY-f 53.9 11 0.00023 42.6 3.2 18 38-55 2-19 (541)
156 cd02640 R3H_NRF R3H domain of 53.6 65 0.0014 24.3 6.3 31 173-203 16-46 (60)
157 TIGR03123 one_C_unchar_1 proba 52.0 10 0.00022 39.2 2.4 31 209-243 116-146 (318)
158 PLN02669 xylulokinase 51.3 13 0.00028 42.0 3.3 20 36-55 8-27 (556)
159 PRK13320 pantothenate kinase; 50.7 18 0.0004 36.0 3.9 23 35-57 1-23 (244)
160 PLN02596 hexokinase-like 50.7 84 0.0018 34.7 9.2 57 186-245 206-264 (490)
161 PRK13318 pantothenate kinase; 50.2 17 0.00037 36.5 3.7 20 38-57 2-21 (258)
162 PRK13321 pantothenate kinase; 50.0 17 0.00038 36.4 3.7 19 38-56 2-20 (256)
163 cd00529 RuvC_resolvase Hollida 49.6 24 0.00052 32.3 4.2 25 38-62 2-28 (154)
164 COG2441 Predicted butyrate kin 49.6 63 0.0014 32.3 7.1 56 360-415 271-336 (374)
165 TIGR03722 arch_KAE1 universal 49.4 3.2E+02 0.007 28.3 16.6 42 363-404 243-289 (322)
166 PF15290 Syntaphilin: Golgi-lo 49.3 40 0.00087 33.5 5.8 21 563-583 83-103 (305)
167 KOG2708 Predicted metalloprote 47.4 1.3E+02 0.0028 29.2 8.7 61 341-407 238-300 (336)
168 PRK00039 ruvC Holliday junctio 46.6 17 0.00037 33.7 2.8 20 35-54 1-20 (164)
169 PF00349 Hexokinase_1: Hexokin 46.5 71 0.0015 30.9 7.1 25 223-247 61-85 (206)
170 COG4296 Uncharacterized protei 46.2 47 0.001 29.1 5.0 21 610-630 91-112 (156)
171 PF08006 DUF1700: Protein of u 46.1 57 0.0012 30.7 6.4 57 576-642 5-63 (181)
172 PRK13326 pantothenate kinase; 45.4 23 0.00051 35.6 3.7 22 36-57 6-27 (262)
173 PF12126 DUF3583: Protein of u 45.0 3.3E+02 0.0071 27.6 11.2 51 567-617 73-123 (324)
174 PLN02902 pantothenate kinase 44.8 1E+02 0.0022 36.3 8.9 51 361-411 345-401 (876)
175 cd02639 R3H_RRM R3H domain of 44.4 46 0.001 25.1 4.2 30 174-203 17-46 (60)
176 KOG2707 Predicted metalloprote 43.3 4.1E+02 0.0089 27.8 18.9 224 150-386 79-329 (405)
177 PRK05082 N-acetylmannosamine k 43.2 76 0.0016 32.4 7.3 49 362-410 233-287 (291)
178 PRK13310 N-acetyl-D-glucosamin 42.6 83 0.0018 32.3 7.5 40 196-236 94-134 (303)
179 KOG0797 Actin-related protein 41.9 9.2 0.0002 41.2 0.2 53 361-413 525-591 (618)
180 KOG3133 40 kDa farnesylated pr 41.2 1.1E+02 0.0023 30.4 7.3 59 571-637 141-203 (267)
181 cd02641 R3H_Smubp-2_like R3H d 39.4 1.2E+02 0.0027 22.7 6.0 29 175-203 18-46 (60)
182 PRK12408 glucokinase; Provisio 39.3 19 0.00042 37.7 2.2 23 33-55 13-35 (336)
183 COG1521 Pantothenate kinase ty 38.5 1.3E+02 0.0029 30.0 7.7 50 331-382 181-230 (251)
184 PRK07058 acetate kinase; Provi 37.7 1.8E+02 0.0039 31.1 8.9 43 340-386 300-343 (396)
185 KOG1369 Hexokinase [Carbohydra 37.1 27 0.00059 38.0 2.8 65 179-246 185-252 (474)
186 PLN02377 3-ketoacyl-CoA syntha 37.0 97 0.0021 34.4 7.2 55 333-387 164-219 (502)
187 PF04614 Pex19: Pex19 protein 36.8 1.5E+02 0.0032 29.7 7.8 62 571-640 121-186 (248)
188 PF00349 Hexokinase_1: Hexokin 36.8 29 0.00063 33.6 2.8 35 184-218 167-204 (206)
189 TIGR00250 RNAse_H_YqgF RNAse H 35.4 24 0.00052 31.3 1.8 18 39-56 1-18 (130)
190 PRK00292 glk glucokinase; Prov 35.2 36 0.00077 35.3 3.4 43 194-236 86-139 (316)
191 PF02075 RuvC: Crossover junct 34.6 66 0.0014 29.3 4.6 24 38-61 1-26 (149)
192 TIGR02707 butyr_kinase butyrat 34.6 55 0.0012 34.6 4.7 46 362-407 293-341 (351)
193 cd02646 R3H_G-patch R3H domain 34.0 1.1E+02 0.0024 22.7 4.9 40 160-202 4-43 (58)
194 COG5026 Hexokinase [Carbohydra 33.5 1.3E+02 0.0028 32.3 7.0 28 223-250 73-101 (466)
195 PRK04325 hypothetical protein; 32.9 2.3E+02 0.005 22.3 6.8 26 625-650 35-60 (74)
196 PF04848 Pox_A22: Poxvirus A22 32.4 75 0.0016 28.7 4.4 26 36-61 1-28 (143)
197 KOG2517 Ribulose kinase and re 31.2 60 0.0013 35.8 4.3 19 36-54 6-24 (516)
198 PF03646 FlaG: FlaG protein; 30.8 1.1E+02 0.0023 26.0 5.1 45 505-557 54-99 (107)
199 COG2069 CdhD CO dehydrogenase/ 30.1 1.1E+02 0.0024 30.8 5.5 65 173-238 251-326 (403)
200 TIGR00671 baf pantothenate kin 29.5 54 0.0012 32.6 3.4 19 39-57 2-20 (243)
201 PRK13324 pantothenate kinase; 28.7 62 0.0013 32.5 3.7 20 38-57 2-21 (258)
202 PLN03173 chalcone synthase; Pr 27.4 2.1E+02 0.0045 30.8 7.7 48 340-387 101-149 (391)
203 PHA00490 terminal protein 27.4 60 0.0013 30.6 3.0 34 620-653 89-125 (266)
204 KOG0103 Molecular chaperones H 27.2 1.3E+02 0.0028 34.2 6.0 44 599-642 671-725 (727)
205 COG3894 Uncharacterized metal- 27.0 3E+02 0.0064 30.3 8.3 45 226-270 165-210 (614)
206 TIGR02627 rhamnulo_kin rhamnul 27.0 31 0.00068 37.9 1.4 17 39-55 1-17 (454)
207 PF03309 Pan_kinase: Type III 27.0 75 0.0016 30.6 3.9 21 38-58 1-21 (206)
208 PLN02854 3-ketoacyl-CoA syntha 26.8 1.8E+02 0.0038 32.5 7.0 54 334-387 181-235 (521)
209 PF03630 Fumble: Fumble ; Int 26.7 1.6E+02 0.0034 31.0 6.3 49 361-409 286-340 (341)
210 COG1521 Pantothenate kinase ty 26.2 69 0.0015 31.9 3.5 21 38-58 2-22 (251)
211 PLN03170 chalcone synthase; Pr 26.2 2E+02 0.0043 31.0 7.3 50 338-387 103-153 (401)
212 PF05435 Phi-29_GP3: Phi-29 DN 25.9 97 0.0021 29.3 4.0 32 622-653 91-125 (266)
213 PF14276 DUF4363: Domain of un 25.6 4.4E+02 0.0095 22.7 10.6 69 568-642 45-113 (121)
214 PLN03172 chalcone synthase fam 25.0 2.2E+02 0.0048 30.6 7.3 52 336-387 97-149 (393)
215 PF07865 DUF1652: Protein of u 24.1 2.7E+02 0.0057 21.7 5.5 50 506-555 15-65 (69)
216 TIGR01319 glmL_fam conserved h 24.1 2E+02 0.0042 31.5 6.5 51 230-281 1-51 (463)
217 PF00815 Histidinol_dh: Histid 23.9 1.7E+02 0.0036 31.5 5.9 49 172-220 137-186 (412)
218 TIGR01312 XylB D-xylulose kina 23.0 42 0.00092 37.1 1.5 17 39-55 1-17 (481)
219 COG0554 GlpK Glycerol kinase [ 22.7 70 0.0015 34.7 2.9 21 35-55 4-24 (499)
220 PHA02557 22 prohead core prote 22.3 6.3E+02 0.014 25.3 9.0 83 546-641 142-224 (271)
221 PF11052 Tr-sialidase_C: Trans 22.1 97 0.0021 18.8 2.1 22 2-23 1-23 (25)
222 COG1334 FlaG Uncharacterized f 22.0 2.3E+02 0.0049 24.7 5.3 42 506-555 67-109 (120)
223 COG1069 AraB Ribulose kinase [ 21.9 77 0.0017 35.0 3.0 22 35-56 2-23 (544)
224 PF07066 DUF3882: Lactococcus 21.8 1.1E+02 0.0024 27.5 3.4 24 35-58 1-29 (159)
225 PLN03168 chalcone synthase; Pr 21.8 2.5E+02 0.0055 30.1 7.0 56 334-390 94-150 (389)
226 COG2410 Predicted nuclease (RN 21.6 1.7E+02 0.0036 27.1 4.6 32 36-67 1-33 (178)
227 PF15466 DUF4635: Domain of un 21.5 1.1E+02 0.0024 26.2 3.2 40 606-645 84-123 (135)
228 TIGR01319 glmL_fam conserved h 21.3 63 0.0014 35.1 2.2 59 185-243 193-267 (463)
229 PF08392 FAE1_CUT1_RppA: FAE1/ 21.1 2.3E+02 0.005 28.9 6.0 44 344-387 86-130 (290)
230 PRK15080 ethanolamine utilizat 21.1 3E+02 0.0065 27.7 7.1 44 223-266 22-65 (267)
231 PRK00877 hisD bifunctional his 20.8 1.4E+02 0.003 32.2 4.7 49 172-221 151-200 (425)
232 PF05378 Hydant_A_N: Hydantoin 20.5 90 0.0019 29.3 2.9 18 39-56 2-19 (176)
233 PF04518 Effector_1: Effector 20.3 7.9E+02 0.017 26.1 9.9 61 565-641 217-277 (379)
234 PF05957 DUF883: Bacterial pro 20.2 4.9E+02 0.011 21.3 7.4 66 545-617 5-72 (94)
235 PLN02192 3-ketoacyl-CoA syntha 20.1 3.1E+02 0.0068 30.5 7.3 54 334-387 169-223 (511)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-137 Score=1011.36 Aligned_cols=633 Identities=79% Similarity=1.185 Sum_probs=615.5
Q ss_pred hcccCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCC
Q 005955 31 EATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKF 110 (667)
Q Consensus 31 ~~~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 110 (667)
..++++.|||||+|||||||+++++|.++||.|++|+|.+||+|+|.++++++|+.|+++...||++++++.||++|+.+
T Consensus 31 ~~~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~ 110 (663)
T KOG0100|consen 31 EAEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKF 110 (663)
T ss_pred chhccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCccc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHH
Q 005955 111 EDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (667)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 190 (667)
+++.+|.+++++||++++.+++++++|.+..|+.+.|+|+++++|+|..+++.|+.++|..+.++|+||||||++.||++
T Consensus 111 ~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQA 190 (663)
T KOG0100|consen 111 NDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQA 190 (663)
T ss_pred CChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhh
Confidence 99999999999999999999999999999668889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 191 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
+++|..+|||+++++|+||+|||++||+++.....++||||+||||||+|++.++++.|+++++.|+.++||++||++++
T Consensus 191 TKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 191 TKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred hcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~ 350 (667)
+|+.+.++++++.+++.+.+++.+|+++||++|+.||.+.++.+.|+++++|.|++-++||+.||++..+++...+.+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecc
Q 005955 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (667)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~ 430 (667)
++|+++++++.+|+.|+||||++|||.+|++|+++|+|+++++.+||++|||+|||.+|..+|+. ....++++.|++|
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~p 428 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNP 428 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 4578999999999
Q ss_pred ccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEE
Q 005955 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTF 510 (667)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~ 510 (667)
.++||++.+|.|.++||||+.+|++++..|++..|+|+++.|++|+|++++..+|..||+|.|+|+||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhh
Q 005955 511 EVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDK 590 (667)
Q Consensus 511 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~ 590 (667)
++|.||+|+|++.++++|++.+++|+++..+|++++|++|.++.++|.++|+..+++.++||+||+|.|.+++.+.+.++
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkek 588 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEK 588 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 005955 591 LADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTESSDDDDSHDEL 667 (667)
Q Consensus 591 ~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 667 (667)
+...+++++++.+..++++..+||++|.++++++|++++++|+.+++||..+++..+||+|.. .++.|++.+|||
T Consensus 589 Lg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~~~~~--~~~ed~~e~del 663 (663)
T KOG0100|consen 589 LGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGGAPEP--AGEEDTDEKDEL 663 (663)
T ss_pred hcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--CCCccchhhccC
Confidence 999999999999999999999999999999999999999999999999999999988887543 234455567765
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.2e-105 Score=897.60 Aligned_cols=613 Identities=68% Similarity=1.076 Sum_probs=580.1
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
+.+||||||||||++|++++|.++++.|..|++.+||+|+|.++++++|..|..+...+|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 116 QRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
+...+.+||.++. .++...+.+.+ .|..+.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTY-QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEe-CCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 9999999999875 77778888887 777788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
|++||++++++++||+|||++|+..... .+.++||||+||||||+|++++.++.++++++.++.++||.+||..|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999986543 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHH
Q 005955 274 IKLIKKKH-GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (667)
Q Consensus 274 ~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~ 352 (667)
.++|.+++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++.++++.++.++|||++|+++|+|+++++..+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 46777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecccc
Q 005955 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLT 432 (667)
Q Consensus 353 l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~ 432 (667)
|+.++++..+|+.|+|+||+||+|+|+++|++.|++.++...+||++|||+|||++|+++++...++++++.+.|++|++
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~s 402 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLS 402 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccc
Confidence 99999999999999999999999999999999997677888999999999999999999988654667899999999999
Q ss_pred CceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEE
Q 005955 433 LGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEV 512 (667)
Q Consensus 433 ~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~ 512 (667)
||++..++.+.++|++|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.++++|+.+.|.++|+|+|++
T Consensus 403 lgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~i 482 (653)
T PTZ00009 403 LGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDI 482 (653)
T ss_pred cCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999899999999
Q ss_pred cCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhh
Q 005955 513 DANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLA 592 (667)
Q Consensus 513 d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~ 592 (667)
|.||+|+|++.+..+++...+++.....+|++++++++++++.++..+|+..+++.+++|+||+|+|++|+.|++.+ +.
T Consensus 483 d~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~-~~ 561 (653)
T PTZ00009 483 DANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEK-VK 561 (653)
T ss_pred CCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhh-hh
Confidence 99999999999999999999988876678999999999999999999999999999999999999999999998644 89
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 593 DKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 593 ~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
+++++++++++.+.++++++||+++++++.++|++|+++|+++++||..|++.++|||
T Consensus 562 ~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~ 619 (653)
T PTZ00009 562 GKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGG 619 (653)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999988888999999999999999999999998875554
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.8e-102 Score=864.73 Aligned_cols=610 Identities=50% Similarity=0.822 Sum_probs=565.4
Q ss_pred hhhhhhhcccCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHH
Q 005955 25 ISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKR 104 (667)
Q Consensus 25 ~~~~~~~~~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~ 104 (667)
+..+|++.+-++.+||||||||||++|++++|.++++.|..|.+.+||+|+|.++.+++|..|+.+...+|.++++.+||
T Consensus 16 ~~~~~~~~~~~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KR 95 (657)
T PTZ00186 16 RLARHESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKR 95 (657)
T ss_pred cccccccCcccceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHH
Confidence 34556666656789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCC
Q 005955 105 LIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYF 183 (667)
Q Consensus 105 llg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~ 183 (667)
+||+++.++.++.....+||.++. .++...+. ...| +.++|+++++++|+++++.|+.+++.++.++|||||+||
T Consensus 96 liG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~--~~~~--~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF 171 (657)
T PTZ00186 96 LIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ--DGNG--KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYF 171 (657)
T ss_pred HhccccccHHHHHhhccCcEEEEEcCCCceEEE--eCCC--eEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCC
Confidence 999999999999999999999885 55544443 2133 679999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcch
Q 005955 184 NDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 263 (667)
++.||+++++||++|||+++++++||+|||++|+.... .+.+++|||+||||||+|++++.++.++++++.|+.++||.
T Consensus 172 ~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~ 250 (657)
T PTZ00186 172 NDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGE 250 (657)
T ss_pred ChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCch
Confidence 99999999999999999999999999999999998654 36789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHH
Q 005955 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNN 339 (667)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~ 339 (667)
+||..|++|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++|+
T Consensus 251 DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~ 330 (657)
T PTZ00186 251 DFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQ 330 (657)
T ss_pred hHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999988876432 45789999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCC
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDE 419 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~ 419 (667)
|++++++.+++++|+++++.+.+|+.|+||||+||+|.|+++|++.| +.++...+||++|||+|||++|+.+++.
T Consensus 331 ~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~---- 405 (657)
T PTZ00186 331 RLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD---- 405 (657)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----
Confidence 99999999999999999999999999999999999999999999999 5667788999999999999999999875
Q ss_pred ccceEEEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCC
Q 005955 420 TKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPA 499 (667)
Q Consensus 420 ~~~~~~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~ 499 (667)
++++.+.|++|+++|+++.++.+.+|||||+++|++++.+|++..|||+.+.|.||||++....+|..||+|.|.|+|+.
T Consensus 406 ~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~ 485 (657)
T PTZ00186 406 VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPA 485 (657)
T ss_pred cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHH
Q 005955 500 PRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVY 579 (667)
Q Consensus 500 ~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~ 579 (667)
|.|.++|+|+|++|.||+|+|++.+..+|++.+++|... ..|++++++++.++.+++...|+..++..+++|++|.+++
T Consensus 486 ~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 564 (657)
T PTZ00186 486 PRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLT 564 (657)
T ss_pred CCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865 6799999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 580 NMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 580 ~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
.+++.+++. ..++++++..+.+.++..++||..+ +.+.+++++++++|++.+.++..+++..++|+
T Consensus 565 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 630 (657)
T PTZ00186 565 TAERQLGEW----KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAAA 630 (657)
T ss_pred HHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999998651 3578999999999999999999843 44679999999999999999999887766555
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.4e-101 Score=865.69 Aligned_cols=600 Identities=51% Similarity=0.848 Sum_probs=559.5
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||++|++++|.+.++.|..|++.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 34699999999999999999999999999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
. .....+||.++. .++...+. + .| ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~--i-~~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 153 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQ--I-RG--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATK 153 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEE--E-CC--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHH
Confidence 4 345788999875 44444443 4 45 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+||++||++++++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|
T Consensus 154 ~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 154 DAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999998765557789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++|.|+++++..+
T Consensus 234 l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~ 313 (653)
T PRK13411 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEP 313 (653)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999988876432 57889999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEee
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDV 428 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~ 428 (667)
|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|++..+..++||++|||+|||++|+.+++. .+++.+.|+
T Consensus 314 i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv 389 (653)
T PRK13411 314 MQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDV 389 (653)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeec
Confidence 9999999999999999999999999999999999999976788889999999999999999999875 678999999
Q ss_pred ccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEE
Q 005955 429 APLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEV 508 (667)
Q Consensus 429 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v 508 (667)
+|+++|+++.++.+.+||+||+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.|.|.++|+|
T Consensus 390 ~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 469 (653)
T PRK13411 390 TPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEV 469 (653)
T ss_pred ccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcch
Q 005955 509 TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDK 588 (667)
Q Consensus 509 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~ 588 (667)
+|++|.||+|+|++.+..+|+...+++.+. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++
T Consensus 470 ~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~- 547 (653)
T PRK13411 470 SFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE- 547 (653)
T ss_pred EEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999998888764 679999999999999999999999999999999999999999999975
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 589 DKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 589 ~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
+.+++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..++++++||.
T Consensus 548 --~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~~ 606 (653)
T PRK13411 548 --NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGSQ 606 (653)
T ss_pred --hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 678999999999999999999999984 46899999999999999999999999877764
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-100 Score=859.23 Aligned_cols=599 Identities=46% Similarity=0.785 Sum_probs=556.8
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||+||++++|.+.++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 45799999999999999999999999999999999999999974 6899999999999999999999999999998865
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
++.....+||.+.. .+|...+.+.. .+ +.++|+++++++|++|++.|+.+++.++.++|||||++|++.||++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~-~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPR-LE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEec-CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 45566788999875 55665555543 33 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+||++||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||.+||..|++|
T Consensus 156 ~Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 156 DAGRIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 99999999999999999999999998765 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|+++|.++++++..+
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~ 314 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRP 314 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999999999988876543 46788999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEee
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDV 428 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~ 428 (667)
|+++|+++++++.+|+.|+||||+||+|+|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|+
T Consensus 315 i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv 389 (668)
T PRK13410 315 VKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDV 389 (668)
T ss_pred HHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEee
Confidence 99999999999999999999999999999999999999 6778889999999999999999999875 678999999
Q ss_pred ccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEE
Q 005955 429 APLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEV 508 (667)
Q Consensus 429 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v 508 (667)
+|+++|+++.+|.+.++||+|+++|++++.+|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.|.|.++|+|
T Consensus 390 ~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v 469 (668)
T PRK13410 390 TPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469 (668)
T ss_pred ccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcc-
Q 005955 509 TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQIND- 587 (667)
Q Consensus 509 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~- 587 (667)
+|++|.||+|+|++.+..+|++..++|... .+|++++++++++++.++..+|+..+++.++||+||+|+|.+++.|.+
T Consensus 470 ~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~ 548 (668)
T PRK13410 470 AFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDA 548 (668)
T ss_pred EEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888765 789999999999999999999999999999999999999999999975
Q ss_pred hhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 588 KDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 588 ~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~-~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
...+.+++++++++++...++++++||+++ .+...+.|++++++|+.+..++..|+.|
T Consensus 549 ~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 549 ALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234889999999999999999999999987 4567778888899999999999999999
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.5e-100 Score=861.45 Aligned_cols=599 Identities=54% Similarity=0.894 Sum_probs=560.7
Q ss_pred ccCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCC
Q 005955 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (667)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (667)
-.++.+||||||||||++|++++|.++++.|..|++.+||+|+|.+ +++++|..|..+...+|.++++++||+||++++
T Consensus 38 ~~~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 117 (663)
T PTZ00400 38 KATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYD 117 (663)
T ss_pred hhcCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcC
Confidence 3445799999999999999999999999999999999999999975 589999999999999999999999999999999
Q ss_pred CHHHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHH
Q 005955 112 DKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (667)
Q Consensus 112 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 190 (667)
++.++...+.+||.++. .++...+. + .| +.++|+++++++|+++++.|+.+++.++.++|||||++|++.||++
T Consensus 118 d~~~~~~~~~~p~~~~~~~~~~~~~~--~-~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 192 (663)
T PTZ00400 118 EDATKKEQKILPYKIVRASNGDAWIE--A-QG--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQA 192 (663)
T ss_pred cHHHHhhhccCCeEEEecCCCceEEE--E-CC--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHH
Confidence 99999999999999885 55555544 3 45 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 191 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
+++||++||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||.+||..|+
T Consensus 193 ~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 193 TKDAGKIAGLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHHHHcCCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 9999999999999999999999999998754 377999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTM 346 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~ 346 (667)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999999999999999888888866543 478899999999999999999999
Q ss_pred HHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEE
Q 005955 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLL 426 (667)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~ 426 (667)
++|.++|+++++.+.+|+.|+||||+||+|+|+++|++.| +.++...+||+++||+|||++|+.+++. .+++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 9999999999999999999999999999999999999999 5678889999999999999999999875 5789999
Q ss_pred eeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeE
Q 005955 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQI 506 (667)
Q Consensus 427 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i 506 (667)
|++|++||+++.++.+.++||+|+++|.+++++|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhc
Q 005955 507 EVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQIN 586 (667)
Q Consensus 507 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~ 586 (667)
+|+|.+|.||+|+|++.+..+|+...++++.. .+|++++++++.+++.++..+|+..+++.+++|+||+|+|.+|+.|+
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888765 67999999999999999999999999999999999999999999996
Q ss_pred chhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 587 DKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 587 ~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
+ +.+.+++++++.+.+.++++++||+++ +.++|++++++|+++++++..++++ ++++
T Consensus 586 e---~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~-~~~~ 642 (663)
T PTZ00400 586 D---LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYK-QGNS 642 (663)
T ss_pred H---HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence 4 888999999999999999999999986 6899999999999999999998877 4444
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.4e-100 Score=859.37 Aligned_cols=612 Identities=59% Similarity=0.944 Sum_probs=565.7
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEec-CCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||++|++++|.++++.|..|++.+||+|+|. ++++++|..|..+...+|.++++++||+||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 3469999999999999999999999999999999999999997 66899999999999999999999999999998 66
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
.++...+.+||+++. .++...+ .+ +| +.++|+++++++|+++++.|+.+++.++.++|||||++|++.||++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~--~~-~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 153 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWV--EI-DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATK 153 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEE--EE-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHH
Confidence 778888899999986 4454444 34 55 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+||++||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||.+||.+|++|
T Consensus 154 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 154 DAGKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred HHHHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 99999999999999999999999998764 46889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+.++|+++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+++++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~ 312 (627)
T PRK00290 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEP 312 (627)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999999999988876543 57889999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEee
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDV 428 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~ 428 (667)
|+++|+.+++++.+|+.|+|+||+||+|+|++.|++.| +.++...+||++|||+|||++|+.+++. .+++.+.|+
T Consensus 313 i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~ 387 (627)
T PRK00290 313 CKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDV 387 (627)
T ss_pred HHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeec
Confidence 99999999999999999999999999999999999999 6778889999999999999999999874 678999999
Q ss_pred ccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEE
Q 005955 429 APLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEV 508 (667)
Q Consensus 429 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v 508 (667)
+|+++|+++.++.+.+|||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||++.|+++|+.|.|.++|+|
T Consensus 388 ~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 467 (627)
T PRK00290 388 TPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEV 467 (627)
T ss_pred cceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999989999
Q ss_pred EEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcch
Q 005955 509 TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDK 588 (667)
Q Consensus 509 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~ 588 (667)
+|++|.||+|+|++.+..+|+..++++... .+|++++++++++++.++...|+..+++.+++|+||+|+|.+++.|++
T Consensus 468 ~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~- 545 (627)
T PRK00290 468 TFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE- 545 (627)
T ss_pred EEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999988765 679999999999999999999999999999999999999999999973
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCCCCCCCCCCC
Q 005955 589 DKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG-APGAGTESSDDDDSHDE 666 (667)
Q Consensus 589 ~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~-~~~~~~~~~~~~~~~~~ 666 (667)
+.+++++++++++.+.++++++||+++ +.++|++++++|+++++++..|++++.+| +++++..++.|+.+++|
T Consensus 546 --~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (627)
T PRK00290 546 --LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDAE 619 (627)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCccccCc
Confidence 788999999999999999999999976 78999999999999999999999875443 22333345556666665
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.3e-99 Score=853.89 Aligned_cols=597 Identities=51% Similarity=0.835 Sum_probs=556.6
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
..+||||||||||++|++++|.+.++.|..|++.+||+|+|.+ +++++|..|..+...+|.++++.+|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 4699999999999999999999999999999999999999975 5899999999999999999999999999999875
Q ss_pred HHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (667)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 193 (667)
++.....+||.++. .++...+.+.. .| ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~-~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPA-IG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEec-CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45667789999885 55665555544 44 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
||+.||++++++++||+|||++|+..... +..+||||+||||||+|++++.++.++++++.++.++||.+||+.|++|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~-~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC-CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999987653 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccC----CcceEEEeeHHHHHHHHHHHHHHHHHHH
Q 005955 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~l~~~~~~~i~~~i 349 (667)
.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|+++|.++++++..+|
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999999999999999898876542 2578889999999999999999999999
Q ss_pred HHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeec
Q 005955 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (667)
Q Consensus 350 ~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~ 429 (667)
+++|+++++.+.+|+.|+|+||+||+|.|++.|++.| +..+...+||++|||+|||++|+.+++. .+++.+.|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecc
Confidence 9999999999999999999999999999999999999 6777888999999999999999999874 6789999999
Q ss_pred cccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEE
Q 005955 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVT 509 (667)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~ 509 (667)
|++||+++.++.+.++||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.|.|.++|+|+
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 507 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVK 507 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchh
Q 005955 510 FEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKD 589 (667)
Q Consensus 510 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~ 589 (667)
|.+|.||+|+|++.+..+++...++++.. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++
T Consensus 508 f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e-- 584 (673)
T PLN03184 508 FDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKE-- 584 (673)
T ss_pred EEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH--
Confidence 99999999999999999999999988754 679999999999999999999999999999999999999999999963
Q ss_pred hhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 590 KLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 590 ~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
+.+++++++++++.+.++++++||+.+ +.+++++++++|.+.+.++..++++++||+
T Consensus 585 -~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~ 641 (673)
T PLN03184 585 -LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAG 641 (673)
T ss_pred -HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 888999999999999999999999986 678999999999999999999988887665
No 9
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-100 Score=813.65 Aligned_cols=614 Identities=67% Similarity=1.051 Sum_probs=590.5
Q ss_pred ccCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCC
Q 005955 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (667)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (667)
.+.+.++|||||||+++++++.++.++++.|++|++.+||+++|.++++++|..|..+...+|.++++.+|+++|+.+++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHH
Q 005955 113 KEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (667)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l 191 (667)
+.++..++.|||++.. .++.+.+.+.+ +|+.+.++|+++++++|..++..++.+++..+.++|+|||+||++.||+++
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~-~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTY-KGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecc-cccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 9999999999999985 66689999988 888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 192 ~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
.+|+.+||++++++++||+|||++|++.+.. ...+|+|+|+||||+|++++.+.++.+.+.++.++.++||.+||+.|.
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 9999999999999999999999999977654 577899999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~ 350 (667)
+|+..+|+++++.++..+++++.+|+.+||.+|+.||...++.+.+++|+++.++...++|.+|++++.+++..+..++.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~ 322 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVE 322 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecc
Q 005955 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (667)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~ 430 (667)
++|+++.+.+.+|+.|+||||++|+|.++..+++.|+++.+..++|||++||+|||++||.+++.......++.+.|+.|
T Consensus 323 ~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~p 402 (620)
T KOG0101|consen 323 KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAP 402 (620)
T ss_pred HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeeccc
Confidence 99999999999999999999999999999999999988889999999999999999999999987766678999999999
Q ss_pred ccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEE
Q 005955 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTF 510 (667)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~ 510 (667)
.++||++.++.|.++|++|+.+|++++.+|+++.|||+.+.|.||+|++....+|..+|.|.|.|+||+|.|.+.|+++|
T Consensus 403 l~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ievtf 482 (620)
T KOG0101|consen 403 LSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTF 482 (620)
T ss_pred ccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhh
Q 005955 511 EVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDK 590 (667)
Q Consensus 511 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~ 590 (667)
.+|.||+|.|++.++.+|+...++|+++..+|+.++|++|..+.+.+..+|...+.+.+++|.||+|+|.++..+++..
T Consensus 483 diD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~- 561 (620)
T KOG0101|consen 483 DIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK- 561 (620)
T ss_pred ecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 005955 591 LADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 652 (667)
Q Consensus 591 ~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~~~ 652 (667)
+.++++++.++.+.++++..||+.+..+.+++|++|..+|+..+.||+.+.++. |+||
T Consensus 562 --~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~--~~~~ 619 (620)
T KOG0101|consen 562 --GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG--GGPG 619 (620)
T ss_pred --cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc--CCCC
Confidence 789999999999999999999999987889999999999999999999998873 4444
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=3e-97 Score=833.35 Aligned_cols=593 Identities=54% Similarity=0.864 Sum_probs=552.4
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||++|++++|.+.++.|..|++.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 35799999999999999999999999999999999999999975 5799999999999999999999999999998765
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
+....+.+||.++. .++...+.+.. .+ ..++|+++++++|+++++.|+.+++.++.++|||||++|++.||++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~i~~~~~~-~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~ 155 (621)
T CHL00094 80 -ISEEAKQVSYKVKTDSNGNIKIECPA-LN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATK 155 (621)
T ss_pred -HHhhhhcCCeEEEECCCCCEEEEEec-CC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 45566779999875 55655555443 34 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+||+.||++++++++||+|||++|+..... +..+||||+||||||+|++++.++.++++++.++..+||.+||..|++|
T Consensus 156 ~Aa~~AGl~v~~li~EptAAAlay~~~~~~-~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 156 DAGKIAGLEVLRIINEPTAASLAYGLDKKN-NETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred HHHHHcCCceEEEeccHHHHHHHhccccCC-CCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 999999999999999999999999987543 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccC----CcceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++...|+|++|++++.++++++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~ 314 (621)
T CHL00094 235 LIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIP 314 (621)
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999988898887653 246888999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEee
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDV 428 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~ 428 (667)
|+++|+++++.+.+|+.|+|+||+||+|.|++.|++.| +.++...+||++|||+|||++|+.+++. .+++.+.|+
T Consensus 315 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~ 389 (621)
T CHL00094 315 VENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDV 389 (621)
T ss_pred HHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeee
Confidence 99999999999999999999999999999999999999 6778889999999999999999998874 678999999
Q ss_pred ccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEE
Q 005955 429 APLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEV 508 (667)
Q Consensus 429 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v 508 (667)
+|+++|+++.++.+.+|||+|+++|++++++|++..|+|+.+.+.+|||++....+|..||+|.|+++|+.+.|.++|+|
T Consensus 390 ~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v 469 (621)
T CHL00094 390 TPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469 (621)
T ss_pred eceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcch
Q 005955 509 TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDK 588 (667)
Q Consensus 509 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~ 588 (667)
+|++|.||+|+|++.+..+|+...+++.+. .+|++++++++++++.++...|+..+++.+++|+||+|+|.+|+.|++
T Consensus 470 ~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~- 547 (621)
T CHL00094 470 TFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE- 547 (621)
T ss_pred EEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 999999999999999999999988888754 679999999999999999999999999999999999999999999963
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 589 DKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 589 ~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
+.+++++++++++.+.++++++||+++ +.+++++++++|++.++++..++++
T Consensus 548 --~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 548 --LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999987 5689999999999999999999887
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=6.9e-97 Score=831.35 Aligned_cols=589 Identities=58% Similarity=0.924 Sum_probs=550.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC-ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
.+||||||||||++|++++|.+.++.|..|++.+||+|+|.++ ++++|..|..+...+|.++++++||+||+++ +.+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHH
Confidence 3799999999999999999999999999999999999999865 8999999999999999999999999999988 346
Q ss_pred HHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005955 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (667)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa 195 (667)
+...+.+||.+...++...+. + +| +.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~--v-~~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKVVGDGGDVRVK--V-DG--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeEEcCCCceEEE--E-CC--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 667788999965566655555 4 55 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHH
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 275 (667)
+.||++++++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.++..+||.+||+.|++|+.+
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 99999999999999999999998764457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHHHHHHH
Q 005955 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (667)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~~~i~~ 351 (667)
+|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++|+++++..+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999988876542 56889999999999999999999999999
Q ss_pred HHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccc
Q 005955 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (667)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~ 431 (667)
+|+++++++.+|+.|+|+||+||+|+|++.|++.| +.++...+||++|||+|||++|+.+++. .+++.+.|++|+
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~ 388 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPL 388 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccc
Confidence 99999999999999999999999999999999999 5778889999999999999999999875 678899999999
Q ss_pred cCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEE
Q 005955 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFE 511 (667)
Q Consensus 432 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~ 511 (667)
++|+++.++.+.++|++|+++|++++++|++..|+|+.+.|.+|||++....+|..||++.++++|+.+.|.++|+++|+
T Consensus 389 ~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~ 468 (595)
T TIGR02350 389 SLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFD 468 (595)
T ss_pred eeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhh
Q 005955 512 VDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKL 591 (667)
Q Consensus 512 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~ 591 (667)
+|.||+|+|++.+..+|+...++++.. .+|++++++++++++.++...|+..+++.+++|+||+|+|.+|+.|++ +
T Consensus 469 ~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~---~ 544 (595)
T TIGR02350 469 IDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE---A 544 (595)
T ss_pred EcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 999999999999999999999888765 679999999999999999999999999999999999999999999964 5
Q ss_pred hccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 592 ADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVY 644 (667)
Q Consensus 592 ~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~ 644 (667)
.+++++++++++.+.++++++||+++ +.++|++++++|+++++++..+++
T Consensus 545 ~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 545 GDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999987 678999999999999999998754
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=6.7e-95 Score=808.97 Aligned_cols=584 Identities=42% Similarity=0.688 Sum_probs=539.7
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC-ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHHH
Q 005955 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (667)
+||||||||||+||++++|.++++.|..|++.+||+|+|.++ .+++|..|+.+...+|.++++.+||+||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999865 899999999999999999999999999998877532
Q ss_pred HhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005955 117 RDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (667)
Q Consensus 117 ~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa 195 (667)
.+.+||.++. .++...+.+. + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~---~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q---GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C---CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 5678998875 5555555442 2 368999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHH
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 275 (667)
+.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||.+||+.|++|+.+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 36789999999999999999999999999999999999999999999999875
Q ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMED 355 (667)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~ 355 (667)
+ ++.+...+++.+.+|+.+||++|+.||....+.+.++. ++.++.++|||++|+++++|+++++..+|+++|++
T Consensus 232 ~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 Q----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred h----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555678889999999999999999999988888864 67899999999999999999999999999999999
Q ss_pred cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccccCce
Q 005955 356 AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGI 435 (667)
Q Consensus 356 ~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~~gi 435 (667)
+++.+.+|+.|+||||+||+|+|+++|++.| +..+..++||++|||+|||++|+.+++. +..+++.+.|++|+++|+
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEE
Confidence 9999999999999999999999999999999 5667788999999999999999999876 345789999999999999
Q ss_pred eeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEEcCC
Q 005955 436 ETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDAN 515 (667)
Q Consensus 436 ~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~d~~ 515 (667)
++.++.+.++||||+++|++++..|++..|+|+.+.|.||||++....+|..||+|.|.++|+.|.|.++|+|+|++|.|
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 462 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDAD 462 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhccC
Q 005955 516 GILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKL 595 (667)
Q Consensus 516 g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~ 595 (667)
|+|+|++.+..+|++..+.+.+. ..|++++++++.++..++..+|+..++..+++|++|+|+|.+++.+.+ +.+.+
T Consensus 463 gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 538 (599)
T TIGR01991 463 GLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA---DGDLL 538 (599)
T ss_pred CeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccC
Confidence 99999999999999999888765 679999999999999999999999999999999999999999998865 44678
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005955 596 ESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 646 (667)
Q Consensus 596 ~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~ 646 (667)
++++++++...++++++||+++ +.++++++.++|++.+.++..+.+++
T Consensus 539 ~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 539 SEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999976 67899999999999999999877664
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.5e-94 Score=803.03 Aligned_cols=583 Identities=41% Similarity=0.687 Sum_probs=535.9
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
..+||||||||||+||++.+|.++++.|..|++.+||+|+|.++.+++|..|+.+...+|.++++.+||+||+.+.+.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~-- 96 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI-- 96 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--
Confidence 478999999999999999999999999999999999999999888999999999999999999999999999988763
Q ss_pred HHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 116 QRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
+.....+||.+.. .+|...+.+. + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~---~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--Q---GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--C---CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4445678998875 5666665542 2 36899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
|++||++++++++||+|||++|++.... +++++|||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~ 250 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWIL 250 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhcccCC-CCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999987653 678999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAME 354 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~ 354 (667)
+++ +.+...+++.+.+|+.+||++|+.||....+.+.++.+ ...|||++|+++++|+++++..+|+++|+
T Consensus 251 ~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 251 EQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred HHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 44445678899999999999999999999888887532 22499999999999999999999999999
Q ss_pred HcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccccCc
Q 005955 355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLG 434 (667)
Q Consensus 355 ~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~~g 434 (667)
++++.+.+|+.|+|+||+||+|+|++.|++.| +..+...+||++|||+|||++|+.+++. ...+++.+.|++|+++|
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeecccccc
Confidence 99999999999999999999999999999999 5666778999999999999999999876 33578999999999999
Q ss_pred eeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEEcC
Q 005955 435 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDA 514 (667)
Q Consensus 435 i~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~d~ 514 (667)
+++.+|.+.++||||+++|+++++.|++..|+|+.+.+.+|||++..+.+|..||++.|.|+|+.|.|.++|+|+|++|.
T Consensus 398 i~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~ 477 (616)
T PRK05183 398 LETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDA 477 (616)
T ss_pred ceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhcc
Q 005955 515 NGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADK 594 (667)
Q Consensus 515 ~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~ 594 (667)
||+|+|++.+..+|++.++++.+. ..|++++++++.++..++..+|+..+++.+++|++|.|+|.+++.+++ ..+.
T Consensus 478 ~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~ 553 (616)
T PRK05183 478 DGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDL 553 (616)
T ss_pred CCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhcc
Confidence 999999999999999999988765 569999999999999999999999999999999999999999999965 2367
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005955 595 LESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 646 (667)
Q Consensus 595 ~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~ 646 (667)
+++++++++...++++++||..+ +.++|++++++|++.++++..+.+++
T Consensus 554 ~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 554 LSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999876 78899999999999999999877663
No 14
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.8e-92 Score=801.57 Aligned_cols=597 Identities=52% Similarity=0.866 Sum_probs=550.0
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHHHH
Q 005955 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQR 117 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~ 117 (667)
||||||||+||+||++++|.++++.|..|++++||+|+|.++++++|..|.....++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005955 118 DMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGI 196 (667)
Q Consensus 118 ~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~ 196 (667)
..+.+||.++. .+|...+.+.+ .|....++|+++++++|+++++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDY-DGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccc-cccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999886 58888898887 78778999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHH
Q 005955 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (667)
Q Consensus 197 ~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 276 (667)
.||++++++++||+|||++|++.+...++++||||+||||+|++++++.++.+++++..++..+||.+||.+|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999888776788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcC--CcceEEeeecccC-CcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 277 IKKKHGKDISKDKRAIGKLRREAERAKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (667)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~-~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l 353 (667)
++++++.++..+++.+.+|+.+||++|+.||. .....+.++.+.+ +.++.+.|||++|++++.|+++++..+|.++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99999988888999999999999999999999 5667777887777 78999999999999999999999999999999
Q ss_pred HHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccccC
Q 005955 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (667)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~~ 433 (667)
++++++..+|+.|+|+||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++. ++.+++.+.|++|++|
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc--cccccccccccccccc
Confidence 9999999999999999999999999999999995 778889999999999999999999886 4577888999999999
Q ss_pred ceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEEc
Q 005955 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVD 513 (667)
Q Consensus 434 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~d 513 (667)
||+..++.+.+++++|+++|.+.+..|.+..++|+.+.+.+|+|+.....+|..||++.+.++++.+.|.++|+++|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhc
Q 005955 514 ANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLAD 593 (667)
Q Consensus 514 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~ 593 (667)
.+|+|+|++.+..++....+++..... +++++++++.++++++..+|+..++..+++|+||+++|++|+.+++. .+
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~---~~ 552 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED---KD 552 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---GG
T ss_pred eeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh---hc
Confidence 999999999999999888888877744 99999999999999999999999999999999999999999999884 56
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 594 KLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 594 ~~~~~~~~~i~~~l~~~~~Wl~~~-~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
+++++++ .+.+++..+||+++ .+++.++|++|+++|+++.+||..|+++
T Consensus 553 ~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 553 FVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp GSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777766 88999999999988 5778999999999999999999999874
No 15
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-93 Score=724.70 Aligned_cols=600 Identities=55% Similarity=0.892 Sum_probs=569.2
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEec-CCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
...|+|||+|||||++++..++.+.++.|.+|.|.+||+++|. +.++++|..|+++...||.++++.-||++|+++.++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 3679999999999999999999999999999999999999995 459999999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
+++.+++..||+++. .+|...++. .| +.++|.++.+++|.+++++|+++++..+...|+||||||++.||++++
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~---~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA---RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe---CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 999999999999997 777666554 56 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+|.++||++++++++||+|||++|+++... ...++|+|+||||||+++..+.++.+++.++.++.++||++||..+.+|
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~ 259 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRF 259 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHH
Confidence 999999999999999999999999999876 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+...|++..++++..+..++.||..++|++|..||...+..+.++.+..+ ..+++++||.+||+++.+++++.+++
T Consensus 260 ~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p 339 (640)
T KOG0102|consen 260 IVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEP 339 (640)
T ss_pred HHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999877655 67889999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEee
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDV 428 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~ 428 (667)
++++|++|++...+|+.|+|+||.+|+|.+++.+++.| +..+....||+++||.|||+++..+++. ++++.+.|+
T Consensus 340 ~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdV 414 (640)
T KOG0102|consen 340 CKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDV 414 (640)
T ss_pred HHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeec
Confidence 99999999999999999999999999999999999999 7788899999999999999999999987 899999999
Q ss_pred ccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEE
Q 005955 429 APLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEV 508 (667)
Q Consensus 429 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v 508 (667)
.|+++||++-+|.|..++++|+.||++++..|++..|+|+.++|.++||++....+|+.+|+|.+.|+||.|+|.|+|+|
T Consensus 415 tpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieV 494 (640)
T KOG0102|consen 415 TPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEV 494 (640)
T ss_pred chHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcch
Q 005955 509 TFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDK 588 (667)
Q Consensus 509 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~ 588 (667)
+|.+|.||+++|++.++.+||.+++++... +.|++.+++.|..+.+.+...|+.++++.+.+|+-+++++.....+..
T Consensus 495 tfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~- 572 (640)
T KOG0102|consen 495 TFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKE- 572 (640)
T ss_pred EEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhh-
Confidence 999999999999999999999999999887 669999999999999999999999999999999999999999998866
Q ss_pred hhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 005955 589 DKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 649 (667)
Q Consensus 589 ~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~ 649 (667)
+.+..+.++..+|...+....+.+..-...+.+++.++...|++..-|+..-++...+.
T Consensus 573 --~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~ 631 (640)
T KOG0102|consen 573 --FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGA 631 (640)
T ss_pred --hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 77788888888999999999998865433355899999999999999999998886433
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5.7e-90 Score=763.16 Aligned_cols=551 Identities=34% Similarity=0.543 Sum_probs=489.1
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH-
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK- 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~- 113 (667)
+..+||||||||||++|++.+|.++++.|..|++.+||+|+|.++.+++|..| +++++||++|+++++.
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 45699999999999999999999999999999999999999998889999876 7999999999988652
Q ss_pred ---HHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHH
Q 005955 114 ---EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (667)
Q Consensus 114 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 190 (667)
.+....+. ... .+...+.+.+ .+ +.++|+++++++|++|++.|+.+++.++.++|||||++|++.||++
T Consensus 88 ~~~~~~~~~k~----~~~-~~~~~~~~~~-~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a 159 (595)
T PRK01433 88 NTPALFSLVKD----YLD-VNSSELKLNF-AN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGE 159 (595)
T ss_pred cchhhHhhhhh----eee-cCCCeeEEEE-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHH
Confidence 22221111 111 1122334444 44 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 191 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
+++||+.||++++++++||+|||++|+..... ...+||||+||||||+|++++.++.++++++.|+.++||.+||.+|+
T Consensus 160 ~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~-~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~ 238 (595)
T PRK01433 160 VMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVIT 238 (595)
T ss_pred HHHHHHHcCCCEEEEecCcHHHHHHHhcccCC-CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHH
Confidence 99999999999999999999999999987643 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~ 350 (667)
+|+.++|. ...+.+ .++.||++|+.||....... ..++|||++|+++|+|+++++..+|+
T Consensus 239 ~~~~~~~~------~~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~ 298 (595)
T PRK01433 239 QYLCNKFD------LPNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQ 298 (595)
T ss_pred HHHHHhcC------CCCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99887763 222222 23459999999998765321 16889999999999999999999999
Q ss_pred HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecc
Q 005955 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (667)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~ 430 (667)
++|++++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ..++.+.|++|
T Consensus 299 ~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p 371 (595)
T PRK01433 299 ECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVP 371 (595)
T ss_pred HHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecc
Confidence 9999998 568999999999999999999999999 6778888999999999999999998765 45788999999
Q ss_pred ccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEE
Q 005955 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTF 510 (667)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~ 510 (667)
+++|+++.+|.+.++|+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||+|.|+|+|+.|.|.++|+|+|
T Consensus 372 ~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf 451 (595)
T PRK01433 372 LSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451 (595)
T ss_pred cceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhh
Q 005955 511 EVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDK 590 (667)
Q Consensus 511 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~ 590 (667)
++|.||+|+|++.+..+|++.++.|..+ ..|++++++++.++.+++...|...++..+++|++|++++.+++.+++
T Consensus 452 ~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--- 527 (595)
T PRK01433 452 AIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE--- 527 (595)
T ss_pred EECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999999999765 569999999999999999999999999999999999999999999965
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 005955 591 LADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNP 638 (667)
Q Consensus 591 ~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~ 638 (667)
+...+++++++.+.+.+++.++||..+ +...+++++++|++.+.+
T Consensus 528 ~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 528 LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 556689999999999999999999865 566777777777766666
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-89 Score=713.08 Aligned_cols=597 Identities=35% Similarity=0.584 Sum_probs=550.7
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHHH
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (667)
+++|||||..+|.+|+++.+.+++|.|+.++|.+|++|+|.++.|++|..|.++...|+.+++..+||++|+++++|.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005955 117 RDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (667)
Q Consensus 117 ~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa 195 (667)
.+...+|+.++. .||...+.+.+ -|+.+.|++++|++|+|.+++..+++.+..++.+|||+||+||++.||+++.+||
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~y-lge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEY-LGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hcccccchheeecCCCCcceeehc-ccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 999999999997 99999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHHhhcccCC------CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHH
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~~~~------~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 269 (667)
+.|||+++++++|.+|+|++||+.+.+ ++.+++++|+|++++.+|++.|..+.+.++++.++.++||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999998765 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHH
Q 005955 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (667)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i 349 (667)
.+|+.++|+.+|++++..++++..||+..||++|+.||++.....+|++++++.|.+..|+|++||++|.|+++++..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeec
Q 005955 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (667)
Q Consensus 350 ~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~ 429 (667)
.++|++++++.++|+.|.+|||+||+|.|+++|+++| ++.+.+++|.++|||+|||+++|++|+. ++++++.+.|+.
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~--frVRef~v~Di~ 397 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPT--FRVREFSVEDIV 397 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcc--ccceecceeccc
Confidence 9999999999999999999999999999999999999 8999999999999999999999999998 779999999999
Q ss_pred cccCceeee----C-CeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecC-ccccccCceeeEEEeeCCCCCCC-C
Q 005955 430 PLTLGIETV----G-GVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGE-RSLTKDCRLLGKFDLSGIPPAPR-G 502 (667)
Q Consensus 430 ~~~~gi~~~----~-~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~l~~~~l~~~~~~~~-~ 502 (667)
||++.+.+. + +....+||+|.++|..+..||.... .|.+..++.. ..++.....|++|++.++.+... .
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 999988754 2 4557899999999999999988765 4788877765 45555668999999999888776 4
Q ss_pred CCeEEEEEEEcCCceEEEEEeec----------------------------CCCc----eeeEEEecC-CCCCCHHHHHH
Q 005955 503 TPQIEVTFEVDANGILNVKAEDK----------------------------GTGK----SEKITITND-KGRLSQEEIDR 549 (667)
Q Consensus 503 ~~~i~v~~~~d~~g~l~v~~~~~----------------------------~~~~----~~~~~i~~~-~~~l~~~~~~~ 549 (667)
..++.|.+.++.+|++++..... ..++ ...+.+... .+.|+..+++.
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~ 553 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELEL 553 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHH
Confidence 46899999999999999864210 0111 112233332 34799999999
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHH
Q 005955 550 MVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEK 628 (667)
Q Consensus 550 ~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~-~~~~~~~~~~k 628 (667)
.++++.+|..+|+...++.+++|.||+|+|++|++|.+ .|.+|+++++++.+...|+++++|||++ ++.+...|..|
T Consensus 554 ~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~--~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~k 631 (727)
T KOG0103|consen 554 YIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD--KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAK 631 (727)
T ss_pred HHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh--hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999999999999999999999999999999999988 4999999999999999999999999988 78999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 005955 629 LKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 629 l~~l~~~~~~i~~r~~e 645 (667)
|.+|+++.+ +.|+.+
T Consensus 632 l~elk~~g~--~~r~~e 646 (727)
T KOG0103|consen 632 LEELKKLGD--KKRFDE 646 (727)
T ss_pred HHHHHhhhh--hhhhhh
Confidence 999999996 444433
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-87 Score=734.68 Aligned_cols=573 Identities=57% Similarity=0.890 Sum_probs=541.0
Q ss_pred CCcEEEEEcCccceEEEEEECC-eEEEEecCCCCcccceEEEecCC-ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (667)
++.+||||||||||+||+++++ .+.++.|..|.+.+||+|+|..+ ++++|..|+++...+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3578999999999999999988 79999999999999999999876 59999999999999999999999999998611
Q ss_pred HHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
...+.+.+ .| +.++|+++++++|+++++.++.+++..+..+|||||+||++.||++++
T Consensus 83 -------------------~~~~~~~~-~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 -------------------GLKISVEV-DG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred -------------------CCcceeee-CC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 11123334 44 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 272 (667)
+|+++||++++++++||+|||++|+.+.. .+..|+|||+||||||+|++++.++.++++++.++.++||.+||.+|.+|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 99999999999999999999999999987 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHH
Q 005955 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (667)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~ 352 (667)
+.+.|..+++.++..++..+.+|+.+||++|+.||...++.+.++.+..+.++...|+|++||+++.+++.++..++.++
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887777778899999999999999999999999999
Q ss_pred HHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecccc
Q 005955 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLT 432 (667)
Q Consensus 353 l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~ 432 (667)
+.++++...+|+.|+|+||++|+|.|++.+++.| +.++...+||+++||.|||++|+.+++. ..++.+.|+.|++
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~pls 374 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPLS 374 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeeec
Confidence 9999999999999999999999999999999999 5888899999999999999999999876 3489999999999
Q ss_pred CceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEE
Q 005955 433 LGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEV 512 (667)
Q Consensus 433 ~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~ 512 (667)
+|+++.++.+.+++++|+.+|.++...|++..|+|+.+.+.+++|++....+|..+|.|.+.++||.|.|.++|+++|.+
T Consensus 375 lgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~i 454 (579)
T COG0443 375 LGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDI 454 (579)
T ss_pred cccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhh
Q 005955 513 DANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLA 592 (667)
Q Consensus 513 d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~ 592 (667)
|.||++.|++.+..+|+...++|..... |++++++.+.+....+.+.|...++..+.+|+.+.+++.++..|.+. .
T Consensus 455 D~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~---~ 530 (579)
T COG0443 455 DANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEI---V 530 (579)
T ss_pred CCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhh---c
Confidence 9999999999999999999999999866 99999999999999999999999999999999999999999998773 3
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 593 DKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 593 ~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
.++++++..+.+.+.+++.||++. .++++.+.++|+....++..++++
T Consensus 531 -~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 531 -KVSEEEKEKIEEAITDLEEALEGE----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999982 899999999999999999988775
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-81 Score=655.80 Aligned_cols=616 Identities=32% Similarity=0.497 Sum_probs=541.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcccCCcEEEEEcCccceEEEEEECC-eEEEEecCCCCcccceEEEecCCceeecHHHHH
Q 005955 11 LVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDSERLIGEAAKN 89 (667)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~ 89 (667)
.++|.++|++++++++.. .+|++||+||.+++++++++| +++|+.|..++|++|++|+|.+++|+||..|..
T Consensus 4 ~~llv~l~~~~~~~~~~~-------~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ 76 (902)
T KOG0104|consen 4 RVLLVILLLCLFVALSSA-------LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAAS 76 (902)
T ss_pred hhHHHHHHHHHHhcccch-------hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhh
Confidence 457888889999998877 899999999999999999999 589999999999999999999999999999999
Q ss_pred hhhhCCchhHHHHHHHhCCCCCCHHHHHhhccCCeEE-EccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHh
Q 005955 90 QAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKI-VNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFL 168 (667)
Q Consensus 90 ~~~~~~~~~~~~~k~llg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~ 168 (667)
...++|++++..++.|+|+...++.+..+.+.+|+-- +....+..+.+.+ .+ ...|+++++++|+|.+.++.|+.+.
T Consensus 77 ma~r~P~~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i-~d-~~~ysvEellAMil~~a~~~ae~~a 154 (902)
T KOG0104|consen 77 MATRFPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKI-SD-QEEYSVEELLAMILQYAKSLAEEYA 154 (902)
T ss_pred hhhcCcHHHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEe-CC-ccccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888887654 4444677777777 43 4679999999999999999999999
Q ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCC----CceEEEEEEcCCceeEEEEEEE
Q 005955 169 GKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 169 ~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~----~~~~vlVvD~GggT~dvsv~~~ 244 (667)
..++.++|||||.||++.||+++.+||++||++++.||+|.+|+|+.|++.+.. .+++++|||||+|+|.++++.+
T Consensus 155 ~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy 234 (902)
T KOG0104|consen 155 KQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSY 234 (902)
T ss_pred hcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEE
Confidence 999999999999999999999999999999999999999999999999998754 7889999999999999999998
Q ss_pred e----------CCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC--CCCCcCHHHHHHHHHHHHHHHHHhcCCcce
Q 005955 245 D----------NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG--KDISKDKRAIGKLRREAERAKRALSSQHQV 312 (667)
Q Consensus 245 ~----------~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~ 312 (667)
. ...+++++.+++..+||..|+.+|.+|+.+.|.++++ .++..+|+++.+|.++|+++|..||++..+
T Consensus 235 ~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea 314 (902)
T KOG0104|consen 235 QLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEA 314 (902)
T ss_pred EeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhh
Confidence 5 1478999999999999999999999999999999876 467789999999999999999999999999
Q ss_pred EEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCC
Q 005955 313 RVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN 392 (667)
Q Consensus 313 ~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~ 392 (667)
.+.|+++.++.|+..+|||++||++|.++..++..+|+++|..++++.++|+.|+|.||++|+|.||+.|.+..+..++.
T Consensus 315 ~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~ 394 (902)
T KOG0104|consen 315 FAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELG 394 (902)
T ss_pred HHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999778899
Q ss_pred CCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccccCceeeeCC--------eeEEEeeCCCCcCccceeeeeecc
Q 005955 393 KGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGG--------VMTKLIPRNTVIPTKKSQVFTTYQ 464 (667)
Q Consensus 393 ~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~~gi~~~~~--------~~~~ii~~~~~ip~~~~~~~~~~~ 464 (667)
..+|+|||++.||+++||.||.. |+++++.+.|...|+|-++.... ....+|+++.++|.++.++|+.+.
T Consensus 395 knlNaDEA~vmGav~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ys 472 (902)
T KOG0104|consen 395 KNLNADEAAVMGAVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYS 472 (902)
T ss_pred cccChhHHHHHHHHHHHHhhccc--ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccC
Confidence 99999999999999999999987 88999999999988887764432 233589999999999988887766
Q ss_pred CCCceeEEEEEecCccccccCceeeEEEeeCCCCCC----C---CCCeEEEEEEEcCCceEEEEEeecC-----------
Q 005955 465 DQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAP----R---GTPQIEVTFEVDANGILNVKAEDKG----------- 526 (667)
Q Consensus 465 d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~----~---~~~~i~v~~~~d~~g~l~v~~~~~~----------- 526 (667)
|+ |.+.+-.|.-. ..+-.+++.|+...- . ...-|.++|.+|..|++.|+..+..
T Consensus 473 dd---f~~~~n~~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~ 544 (902)
T KOG0104|consen 473 DD---FPFNINYGDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGD 544 (902)
T ss_pred Cc---cccccchhhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccch
Confidence 53 33333222210 223467777765432 1 1345999999999999988643200
Q ss_pred ----------C-----------------------Cc-----------------e---------------------eeEEE
Q 005955 527 ----------T-----------------------GK-----------------S---------------------EKITI 535 (667)
Q Consensus 527 ----------~-----------------------~~-----------------~---------------------~~~~i 535 (667)
+ ++ + ..+.|
T Consensus 545 ~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i 624 (902)
T KOG0104|consen 545 KKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQI 624 (902)
T ss_pred hhhhhhccccccccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeee
Confidence 0 00 0 01334
Q ss_pred ecC---CCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHH
Q 005955 536 TND---KGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALE 612 (667)
Q Consensus 536 ~~~---~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~ 612 (667)
... ...|+...++....+++.+..+|+.+.++.++-|+||.|+|++.+++.+++ |.++.+++|+..|.+.+..+.+
T Consensus 625 ~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~e-y~e~at~EEk~~L~~~~~~~~~ 703 (902)
T KOG0104|consen 625 QETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDE-YAEVATEEEKKILKKKVSLLMD 703 (902)
T ss_pred eeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCch-HhhhcCHHHHHHHHHHHHHHHH
Confidence 433 235889999999999999999999999999999999999999999999955 9999999999999999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005955 613 WLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQR 646 (667)
Q Consensus 613 Wl~~~-~~~~~~~~~~kl~~l~~~~~~i~~r~~e~ 646 (667)
||+++ .+..+++|.+++++|++++..+..|..++
T Consensus 704 Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~ 738 (902)
T KOG0104|consen 704 WLEEDGSQTPTEMLTEKLAELKKLETSKNFREEER 738 (902)
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99988 78899999999999999999999998776
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=3.9e-53 Score=453.50 Aligned_cols=336 Identities=27% Similarity=0.392 Sum_probs=286.8
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEec----------------------------------------
Q 005955 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT---------------------------------------- 77 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 77 (667)
++|||||||||++|++++|.++++.+.+|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999994
Q ss_pred -CCceeecHHHHHhhhhCCchh--HHHHHHHhCCCCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHH
Q 005955 78 -DSERLIGEAAKNQAAVNPDRT--IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISA 154 (667)
Q Consensus 78 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~ 154 (667)
++..++|..|..+...+|..+ +..+|++||...-. .+ ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~----------------------------~~--~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK----------------------------PQ--QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC----------------------------cc--ceeCHHHHHH
Confidence 346789999999999999988 67999999964211 11 2234899999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeecchHHHHHHhhcccCCCceE
Q 005955 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFN-----DAQRQA---TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKN 226 (667)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~viTVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~ 226 (667)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||++++++++||+|||++|+.... .+..
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~ 210 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKR 210 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCe
Confidence 999999999999999999999999999998 778766 6999999999999999999999999987544 4788
Q ss_pred EEEEEcCCceeEEEEEEEeCC-------eEEEEEecCCCCCcchHHHHHHH-HHHHHHHHH----hcCCCCC--------
Q 005955 227 ILVFDLGGGTFDVSILTIDNG-------VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKK----KHGKDIS-------- 286 (667)
Q Consensus 227 vlVvD~GggT~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~----~~~~~~~-------- 286 (667)
+||+|+||||+|+|++++.++ ..+++++.| ..+||.+||..|+ +++...|.+ +.+.+++
T Consensus 211 vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~ 289 (450)
T PRK11678 211 VLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAV 289 (450)
T ss_pred EEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhh
Confidence 999999999999999998654 357888887 5899999999998 677777642 1221110
Q ss_pred ---------------------------cCHHHH------------HHHHHHHHHHHHHhcCCcceEEeeecccCCcceEE
Q 005955 287 ---------------------------KDKRAI------------GKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE 327 (667)
Q Consensus 287 ---------------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~ 327 (667)
.+++.+ .+|+.+||++|+.||...++.+.++.+. .++..
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~ 367 (450)
T PRK11678 290 AINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLAT 367 (450)
T ss_pred hhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcce
Confidence 123222 3688999999999999999999888654 45778
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
.|||++|+++++++++++..+|+++|+++++. ++.|+||||+|++|.|++.+++.||+.++. ..+|.++||.|+|+
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~ 443 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLAR 443 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHH
Confidence 99999999999999999999999999999875 579999999999999999999999766554 56999999999999
Q ss_pred hhhh
Q 005955 408 QGGI 411 (667)
Q Consensus 408 ~aa~ 411 (667)
+|..
T Consensus 444 ~a~~ 447 (450)
T PRK11678 444 WAQV 447 (450)
T ss_pred HHHh
Confidence 9965
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.4e-37 Score=326.59 Aligned_cols=307 Identities=27% Similarity=0.388 Sum_probs=236.8
Q ss_pred EEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC---ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
+||||||++|+++.. +...++. .||+|++..+ -..+|.+|+......|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 899999999999876 3334443 4999999953 347999996655444443220
Q ss_pred HHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005955 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (667)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa 195 (667)
..|. .+| .+...++...+++++.+.+..........+|||||++|+..+|+++++|+
T Consensus 62 -----~~pi---------------~~G---~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 -----IRPL---------------RDG---VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -----EccC---------------CCC---eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111 134 23344666778888876554322223447999999999999999999999
Q ss_pred HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHH
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 275 (667)
+.||++.+.+++||+|||++|+..... +..++|||+||||||+++++..... ..++..+||.+||+.|++++.+
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~-~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ-PSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC-CCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999886543 5678999999999999999975422 3457899999999999999876
Q ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc----ceEEeee--cccCCcceEEEeeHHHHHHHHHHHHHHHHHHH
Q 005955 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (667)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i 349 (667)
++.. ... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.++++.+.|
T Consensus 193 ~~~~----~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KYKL----LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hhch----hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 6532 221 257999999987541 1233332 23445667889999999999999999999999
Q ss_pred HHHHHHcC--CCccCcc-eEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 350 KKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 350 ~~~l~~~~--~~~~~i~-~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
++.|+.++ +....++ .|+|+||+|++|.+++++++.| +.++....||+++||+||++++..+
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999985 4456677 7999999999999999999999 7788888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=8.1e-37 Score=319.59 Aligned_cols=306 Identities=26% Similarity=0.389 Sum_probs=241.6
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC-c--eeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
..+||||||+|+++ +.++... +.|+ ||+|+++.+ . ..+|.+|+....++|.++...
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------------ 63 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------------ 63 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-EecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------------
Confidence 35999999999985 5555443 4443 999999854 2 589999988877777664321
Q ss_pred HHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCC--cEEEEeCCCCCHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK--DAVVTVPAYFNDAQRQAT 191 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~--~~viTVPa~~~~~qr~~l 191 (667)
.|. .+|. +..-++++.+|++++..++..++..+. .+|||||++|+..||+++
T Consensus 64 --------~pi---------------~~G~---I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 64 --------RPM---------------KDGV---IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred --------ecC---------------CCCc---cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 011 1442 223378899999999988777765543 799999999999999999
Q ss_pred HHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHH
Q 005955 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (667)
Q Consensus 192 ~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 271 (667)
.+|++.||++.+.+++||+|||++|+..... +..++|+|+|+||||++++.+.+.. ..++..+||.+||+.|.+
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~-~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVDE-PVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcCC-CceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999876543 6678999999999999999875422 345578999999999999
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc----ceEEeee--cccCCcceEEEeeHHHHHHHHHHHHHHH
Q 005955 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKT 345 (667)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~e~l~~~~~~~i 345 (667)
++.+.+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|++++.+++.++
T Consensus 192 ~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i 258 (335)
T PRK13929 192 FVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHI 258 (335)
T ss_pred HHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHH
Confidence 987543 33321 268999999998632 2223332 2334556788999999999999999999
Q ss_pred HHHHHHHHHHcCC--CccCcc-eEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhh
Q 005955 346 MGPVKKAMEDAGL--EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 346 ~~~i~~~l~~~~~--~~~~i~-~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~a 409 (667)
.+.|.+.|+++.. ....++ .|+|+||+|++|.+.+++++.| +.++....||+++||+||+..-
T Consensus 259 ~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 259 LEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999753 335677 6999999999999999999999 7888888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.7e-34 Score=302.18 Aligned_cols=307 Identities=26% Similarity=0.412 Sum_probs=228.9
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC---ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
..+|||+||++++++....+ . ++ .+||+|++..+ ..++|++|.......|.++..
T Consensus 6 ~~igIDlGt~~~~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------------- 63 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------------- 63 (334)
T ss_pred ceeEEEcCcceEEEEECCCc-E-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE-------------
Confidence 45999999999998544332 2 33 26999999754 348999997765554443210
Q ss_pred HHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 193 (667)
..|. .+|....+ +....+++++......... ....+|+|+|++|++.+|++++.
T Consensus 64 -------~~pi---------------~~G~i~d~---~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 64 -------IRPM---------------KDGVIADF---DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------EecC---------------CCCeecCH---HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 0111 14422222 3345555555544433221 22489999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
|++.+|++.+.+++||+|||++|+..... +..++|+|+||||||+++++..+.. ..+...+||.+||+.|.+++
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~~-~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l 191 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVTE-PTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYV 191 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcccC-CCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHH
Confidence 99999999999999999999999876543 5668999999999999999876532 23456899999999999998
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcc----eEEee--ecccCCcceEEEeeHHHHHHHHHHHHHHHHH
Q 005955 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMG 347 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i--~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~ 347 (667)
.+.+ +.... ...+|++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.++++.+
T Consensus 192 ~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 258 (334)
T PRK13927 192 RRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVE 258 (334)
T ss_pred HHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 7544 32221 2578999999975432 22333 2334556678899999999999999999999
Q ss_pred HHHHHHHHcCCC--ccCcc-eEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 348 PVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 348 ~i~~~l~~~~~~--~~~i~-~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
.|.++|++++.. ...++ .|+|+||+|++|.++++|++.| +.++....||+++||+||++++..
T Consensus 259 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 259 AVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 999999997533 23344 5999999999999999999999 678888889999999999999864
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.6e-34 Score=301.58 Aligned_cols=306 Identities=26% Similarity=0.391 Sum_probs=225.2
Q ss_pred EEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC-----c--eeecHHHHHhhhhCCchhHHHHHHHhCCCCC
Q 005955 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (667)
+||||||+||+++....| .++ ..||+|+|.++ . ..+|.+|.....+.|.+.. ++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~-------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI-------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE--------
Confidence 999999999998875444 233 26999999743 2 6799999665444443321 00
Q ss_pred CHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHH
Q 005955 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (667)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l 191 (667)
.|. .+|....+ +....++++++.......+.....+|+|||++|+..+|+++
T Consensus 66 ----------~pi---------------~~G~i~d~---~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 66 ----------RPM---------------KDGVIADF---EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ----------ecC---------------CCCEEEcH---HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 111 13422222 33444555555444322222223899999999999999999
Q ss_pred HHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHH
Q 005955 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (667)
Q Consensus 192 ~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 271 (667)
++|++.+|++.+.+++||+|||++|+.... .+..++|+|+||||||++++++.+.. ..++..+||.+||+.|++
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 999999999999999999999999987544 35678999999999999999876432 234568999999999999
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcc-----eEEeeec--ccCCcceEEEeeHHHHHHHHHHHHHH
Q 005955 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----VRVEIES--LFDGIDFSEPLTRARFEELNNDLFRK 344 (667)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~--~~~~~~~~~~itr~~~e~l~~~~~~~ 344 (667)
++.+.+ +.... +..||++|+.++.... ..+.+.. ...+......++++++.+++.+.+++
T Consensus 192 ~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 258 (333)
T TIGR00904 192 YIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQ 258 (333)
T ss_pred HHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHH
Confidence 987554 22221 2679999999975322 1222211 12234456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCc-cCc-c-eEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 345 TMGPVKKAMEDAGLEK-NQI-D-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 345 i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+.+.|.+.++.++... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 259 i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 259 IVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999876432 233 3 6999999999999999999999 788888999999999999998643
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-33 Score=297.57 Aligned_cols=307 Identities=26% Similarity=0.368 Sum_probs=232.0
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC---ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
.+||||||+++++++...+ + ++ .+||+|++... ..++|.+|.......|.+...
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~-------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA-------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--------------
Confidence 3999999999999887433 2 32 25999999752 468999997665444433110
Q ss_pred HHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
..|+ .+|.. ...+....+++++++.+..........+|+|+|++|+..+|+++.+|
T Consensus 67 ------~~pi---------------~~G~i---~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 67 ------IRPL---------------KDGVI---ADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ------eecC---------------CCCeE---cCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0111 14421 22345677788877665543344467899999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
++.+|++.+.+++||+|||++|+..... ...++|||+||||||++++...... ..+...+||.+||+.|.+++.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~-~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE-PVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC-CCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHH
Confidence 9999999999999999999999875443 4467999999999999999865432 245678999999999999987
Q ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcc----eEEeee--cccCCcceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+++ +.... ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+.
T Consensus 197 ~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 263 (335)
T PRK13930 197 RKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEA 263 (335)
T ss_pred HHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHH
Confidence 653 32221 2578999999975432 122222 2233455678899999999999999999999
Q ss_pred HHHHHHHcCCC--ccCcce-EEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 349 VKKAMEDAGLE--KNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 349 i~~~l~~~~~~--~~~i~~-ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
|.++|+.+... ...++. |+|+||+|++|.++++|++.| +.++....+|++++|+||++.+..
T Consensus 264 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 264 VKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 99999986432 233454 999999999999999999999 678888889999999999999864
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.1e-32 Score=280.98 Aligned_cols=304 Identities=28% Similarity=0.416 Sum_probs=218.7
Q ss_pred EEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC---ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
-+||||||+++.++.-..| ++.++ ||+|+++.. -..+|.+|.. ++|+...+-.
T Consensus 3 ~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~---------------m~gktp~~i~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKA---------------MLGKTPDNIE 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHT---------------TTTS-GTTEE
T ss_pred ceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHH---------------HhhcCCCccE
Confidence 5899999999998443333 23333 999999864 4568999954 4444322211
Q ss_pred HHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
+ ..| +.+|. +.--++...+|+++.+.+.......-..++++||+.-++.+|+++.+|
T Consensus 59 ~-----~~P---------------l~~Gv---I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V-----VRP---------------LKDGV---IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E-----E-S---------------EETTE---ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E-----Ecc---------------ccCCc---ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 1 112 12662 333567888888888877664233446899999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
+..+|...+.+++||.|||+..++.-.. +...||+|+||||||++++...+-. .......||.+||+++.+|+.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~-~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~DeaI~~~ir 189 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE-PRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDEAIIRYIR 189 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS-SS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC-CCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhHHHHHHHH
Confidence 9999999999999999999999988764 6778999999999999999743321 122357899999999999977
Q ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc------ceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+++ +..+.. ..||++|+.++... ...+.-.++..|.+..+.|+.+++.+++.+.+.++.+.
T Consensus 190 ~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~ 256 (326)
T PF06723_consen 190 EKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEA 256 (326)
T ss_dssp HHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred Hhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 665 333332 78999999987542 23444445678889999999999999999999999999
Q ss_pred HHHHHHHcCCCcc---Cc--ceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 349 VKKAMEDAGLEKN---QI--DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 349 i~~~l~~~~~~~~---~i--~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
|+++|+.. +++ +| +.|+|+||+++++++.++|++.+ +.++....+|..+||+||.....
T Consensus 257 i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 257 IKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999984 222 22 56999999999999999999999 89999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=6.9e-30 Score=249.09 Aligned_cols=310 Identities=27% Similarity=0.394 Sum_probs=243.3
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC--C---ceeecHHHHHhhhhCCchhHHHHHHHhCCCCC
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD--S---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (667)
.-+|||+||.|+.|..-..| ++.++ ||+|++.. + -..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 46999999999998765333 45555 99999986 3 45689999 677777655
Q ss_pred CHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhc-CCCCcEEEEeCCCCCHHHHHH
Q 005955 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG-KKIKDAVVTVPAYFNDAQRQA 190 (667)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~-~~~~~~viTVPa~~~~~qr~~ 190 (667)
+....+.+ .+|. +---++...+++|+++....... .....++++||+.-++.+|++
T Consensus 63 ni~aiRPm--------------------kdGV---IAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIVAIRPM--------------------KDGV---IADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred CceEEeec--------------------CCcE---eecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 43222211 1553 33456777888888887764333 344579999999999999999
Q ss_pred HHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 191 l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
+++|++.||...+.++.||.|||+..++.-.. +..-||||+||||||++++.+.+-. +.....+||+.||+.+.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e-p~G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME-PTGSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAII 193 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC-CCCCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHH
Confidence 99999999999999999999999999877665 4456999999999999999987643 23345799999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc--------ceEEeeecccCCcceEEEeeHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH--------QVRVEIESLFDGIDFSEPLTRARFEELNNDLF 342 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~ 342 (667)
+|+.++ |+.-+.. ..+|++|....... +..+.-.++..+.+-.++++.+++.+.+++.+
T Consensus 194 ~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v 260 (342)
T COG1077 194 VYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPL 260 (342)
T ss_pred HHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHH
Confidence 996654 5544443 56899999875332 24455556777888899999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCccCcce-EEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 343 RKTMGPVKKAMEDA--GLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 343 ~~i~~~i~~~l~~~--~~~~~~i~~-ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
+.|++.++..|++. .+..+-++. ++|+||++.+..+.+.+++.. +.++....+|-.+||+|+.+....+.
T Consensus 261 ~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 261 NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999985 223333455 999999999999999999998 88898999999999999998876554
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=3.2e-29 Score=248.32 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEE
Q 005955 148 SPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNI 227 (667)
Q Consensus 148 ~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~v 227 (667)
..-+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+.. ..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------~~ 110 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------NG 110 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------Cc
Confidence 335778999999999998888888999999999999999999999999999999999999999999998643 25
Q ss_pred EEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhc
Q 005955 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 307 (667)
Q Consensus 228 lVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 307 (667)
+|+|+||||||+++++. +.+. ...+..+||.+||+.|.+.+ +.+ +.+||++|+.++
T Consensus 111 ~vvDiGggtt~i~i~~~--G~i~---~~~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~~K~~~~ 166 (239)
T TIGR02529 111 AVVDVGGGTTGISILKK--GKVI---YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEEYKRGHK 166 (239)
T ss_pred EEEEeCCCcEEEEEEEC--CeEE---EEEeeecchHHHHHHHHHHh--------CCC-----------HHHHHHHHHhcC
Confidence 99999999999999864 3322 13456799999999886552 222 278999998754
Q ss_pred CCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC
Q 005955 308 SQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (667)
Q Consensus 308 ~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~ 387 (667)
. .+++.+++.+.++++.+.+++.|++. .++.|+|+||++++|++++.+++.|
T Consensus 167 ~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l- 218 (239)
T TIGR02529 167 D----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL- 218 (239)
T ss_pred C----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-
Confidence 1 45677899999999999999999864 4678999999999999999999999
Q ss_pred CCCCCCCCCchhHHHhHHHH
Q 005955 388 GKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 388 ~~~v~~~~~p~~avA~GAa~ 407 (667)
+.++..+.||++++|.|||+
T Consensus 219 g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 219 GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CCCcccCCCCCeehhheeec
Confidence 78888899999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=3.6e-26 Score=230.67 Aligned_cols=202 Identities=27% Similarity=0.402 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEE
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlV 229 (667)
-+.....|+++++.++.+++.++..++++||++|+..+++.+.+|++.||+++..+++||.|++.+|... ..++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 4666778899999999888888999999999999999999999999999999999999999999987542 2589
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC
Q 005955 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (667)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 309 (667)
+|+|||||+++++. ++.+.. .++..+||.+||+.|++++ +.+ +.+||++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~~~---~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKVVY---SADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeEEE---EecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC--
Confidence 99999999999975 333222 2467899999999998764 222 378899987652
Q ss_pred cceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCC
Q 005955 310 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (667)
Q Consensus 310 ~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~ 389 (667)
+++++.+++++.++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.| +.
T Consensus 194 --------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~ 247 (267)
T PRK15080 194 --------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GL 247 (267)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CC
Confidence 357789999999999999999999863 5789999999999999999999999 78
Q ss_pred CCCCCCCchhHHHhHHHHhh
Q 005955 390 EPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 390 ~v~~~~~p~~avA~GAa~~a 409 (667)
++....||++++|.|||+++
T Consensus 248 ~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccCCCchHHHHHHHHhhC
Confidence 88889999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=1.3e-22 Score=216.28 Aligned_cols=195 Identities=23% Similarity=0.315 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchH
Q 005955 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (667)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 264 (667)
....+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||++++.. +.... .....+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-KELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-hcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHH
Confidence 3456777889999999999999999999998854332 3567999999999999999963 33221 2345799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC------cceEEeeecccCCcceEEEeeHHHHHHHH
Q 005955 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELN 338 (667)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~l~ 338 (667)
||+.+.+.+. . .+.+||++|+.++.. ....+.++... .+....++|++|++++
T Consensus 231 it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii 289 (371)
T TIGR01174 231 ITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEII 289 (371)
T ss_pred HHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHH
Confidence 9998876421 1 147899999999863 23455665443 3566889999999999
Q ss_pred HHHHHHHHHHHH-HHHHHcCCCccCcce-EEEecCccCcHHHHHHHHhHcCCCCCCC------------CCCchhHHHhH
Q 005955 339 NDLFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYG 404 (667)
Q Consensus 339 ~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~sr~p~i~~~l~~~f~~~~v~~------------~~~p~~avA~G 404 (667)
++.++++.+.|+ +.|++++.. .+++. |+|+||+|++|.+++.+++.| +.++.. ..+|..++|.|
T Consensus 290 ~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~G 367 (371)
T TIGR01174 290 EARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAVG 367 (371)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHHH
Confidence 999999999997 999998876 56776 999999999999999999999 443311 12788899999
Q ss_pred HHHh
Q 005955 405 AAVQ 408 (667)
Q Consensus 405 Aa~~ 408 (667)
.++|
T Consensus 368 l~~~ 371 (371)
T TIGR01174 368 LLLY 371 (371)
T ss_pred HHhC
Confidence 8864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.90 E-value=6.7e-22 Score=213.00 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHH
Q 005955 189 QATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 189 ~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 268 (667)
+.+..|++.||+++..++.||.|+|.++.... .++..++++|+||||||+++++ ++.+. ......+||.++++.
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~d 242 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSD 242 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHH
Confidence 34456999999999999999999999885443 3467799999999999999997 34322 233457999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC------cceEEeeecccCCcceEEEeeHHHHHHHHHHHH
Q 005955 269 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDLF 342 (667)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~ 342 (667)
|...+. .. ...||++|..+... ....+.++...+.. ...++|.++.+++.+.+
T Consensus 243 Ia~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~r~ 301 (420)
T PRK09472 243 IAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEPRY 301 (420)
T ss_pred HHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHHHH
Confidence 875531 11 37899999876432 23455565433222 24789999999999977
Q ss_pred HHHHHHHHH-------HHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC------------CCCchhHHHh
Q 005955 343 RKTMGPVKK-------AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAY 403 (667)
Q Consensus 343 ~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~------------~~~p~~avA~ 403 (667)
+++++.|.+ .+..+++....++.|+|+||++++|.+++.+++.| +.++.. ..+|..++|.
T Consensus 302 ~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata~ 380 (420)
T PRK09472 302 TELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTAV 380 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHHH
Confidence 777777765 45666777778899999999999999999999999 444321 2489999999
Q ss_pred HHHHhhh
Q 005955 404 GAAVQGG 410 (667)
Q Consensus 404 GAa~~aa 410 (667)
|.++|+.
T Consensus 381 Gl~~~~~ 387 (420)
T PRK09472 381 GLLHYGK 387 (420)
T ss_pred HHHHHhh
Confidence 9999976
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.82 E-value=2.5e-18 Score=179.93 Aligned_cols=198 Identities=26% Similarity=0.405 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHH
Q 005955 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 266 (667)
--+.+.+|.+.+|+++..++.+|.|+|.+.. ....+.-.++++|+||||||+++++ ++.+. +.+..++||++++
T Consensus 166 ~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L-~~dEkelGv~lIDiG~GTTdIai~~--~G~l~---~~~~ipvgG~~vT 239 (418)
T COG0849 166 ILENLEKCVERAGLKVDNIVLEPLASALAVL-TEDEKELGVALIDIGGGTTDIAIYK--NGALR---YTGVIPVGGDHVT 239 (418)
T ss_pred HHHHHHHHHHHhCCCeeeEEEehhhhhhhcc-CcccHhcCeEEEEeCCCcEEEEEEE--CCEEE---EEeeEeeCccHHH
Confidence 3466788999999999999999999998774 4444577899999999999999998 33322 3444689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc------ceEEeeecccCCcceEEEeeHHHHHHHHHH
Q 005955 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNND 340 (667)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~~e~l~~~ 340 (667)
..|+.-|.- + +..||++|..+.... ...+.++...+. ...+++|..+.+++++
T Consensus 240 ~DIa~~l~t--------~-----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~~~~~t~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLKT--------P-----------FEEAERIKIKYGSALISLADDEETIEVPSVGSD--IPRQVTRSELSEIIEA 298 (418)
T ss_pred HHHHHHhCC--------C-----------HHHHHHHHHHcCccccCcCCCcceEecccCCCc--ccchhhHHHHHHHHHh
Confidence 999866432 1 278999999885432 334555544333 3677899999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCC--C----------CCCchhHHHhHHHHh
Q 005955 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN--K----------GVNPDEAVAYGAAVQ 408 (667)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~--~----------~~~p~~avA~GAa~~ 408 (667)
.+.+++..++..|++.++...-...|+|+||++.+|++.+..++.| +.++. . ..+|..+.|.|..++
T Consensus 299 R~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if-~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 299 RVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIF-GRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhc-CCceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 9999999999999999998777889999999999999999999999 33321 1 236899999999999
Q ss_pred hhhh
Q 005955 409 GGIL 412 (667)
Q Consensus 409 aa~~ 412 (667)
+...
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 8753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.67 E-value=8.7e-16 Score=164.12 Aligned_cols=299 Identities=18% Similarity=0.161 Sum_probs=189.0
Q ss_pred EEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC----------CceeecHHHHHhhhhCCchhHHHHHHHhCC
Q 005955 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD----------SERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~llg~ 108 (667)
|.||+||.++++++..++.+..+ +||+++... ....+|.+|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~--------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL--------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC---------------
Confidence 78999999999999866644332 377766542 245677766332100
Q ss_pred CCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHH
Q 005955 109 KFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQR 188 (667)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr 188 (667)
......|++ +|. .. --+....+++++...... .......+++++|..++..+|
T Consensus 59 --------~~~~~~P~~---------------~G~--i~-d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 --------GLELIYPIE---------------HGI--VV-DWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred --------ceEEccccc---------------CCE--Ee-CHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 000111211 442 22 234455677776654321 122346799999999998888
Q ss_pred HHHHH-HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHH
Q 005955 189 QATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (667)
Q Consensus 189 ~~l~~-Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 267 (667)
+.+.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+. ++.. +........+||.++|+
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~ 182 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTR 182 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHH
Confidence 88877 4677999999999999999998864 5679999999999998886 3322 11223346799999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcc-----------------eEEeeecccCCcceEEEee
Q 005955 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----------------VRVEIESLFDGIDFSEPLT 330 (667)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~i~i~~~~~~~~~~~~it 330 (667)
.|.+++..... ..+. ..-...++.+|+.+..... ..+.+ -+ ...+.++
T Consensus 183 ~l~~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l---pd--~~~i~~~ 247 (371)
T cd00012 183 YLKELLRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL---PD--GRTIKVG 247 (371)
T ss_pred HHHHHHHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEEC---CC--CeEEEEC
Confidence 99988654321 0011 0112456777776543211 01111 11 2234555
Q ss_pred HHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCccCcceEEEecCccCcHHHHHHHHhHcCC---------CCC
Q 005955 331 RARF---EELNNDL-----FRKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG---------KEP 391 (667)
Q Consensus 331 r~~~---e~l~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~---------~~v 391 (667)
.+.| |-++.|. ...+.+.|.+++.... ....-++.|+|+||+|++|.+.++|++.+.. ..+
T Consensus 248 ~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~ 327 (371)
T cd00012 248 NERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKV 327 (371)
T ss_pred hHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEE
Confidence 5544 2233332 2367788888887753 2234468899999999999999999988731 123
Q ss_pred CCCCCchhHHHhHHHHhhhh
Q 005955 392 NKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 392 ~~~~~p~~avA~GAa~~aa~ 411 (667)
....+|..++-.||+++|..
T Consensus 328 ~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 328 IAPPERKYSVWLGGSILASL 347 (371)
T ss_pred ccCCCccccEEeCchhhcCc
Confidence 34568899999999999864
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.61 E-value=5.8e-15 Score=157.94 Aligned_cols=300 Identities=18% Similarity=0.188 Sum_probs=183.8
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC---------ceeecHHHHHhhhhCCchhHHHHHHHhC
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---------ERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (667)
..|+||+||.++++++..+..|.++ +||+++...+ ..++|.+|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 3689999999999999866655443 4888876532 235666552110 0
Q ss_pred CCCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHH
Q 005955 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (667)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~q 187 (667)
. .....|+. +|. +.--+....+++++...... ....-..+++|.|...+..+
T Consensus 59 ~---------~~~~~P~~---------------~G~---i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 59 G---------LELKYPIE---------------HGI---VENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred C---------ceecCCCc---------------CCE---EeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 0 00112221 442 23345566777777664211 12233578999999998999
Q ss_pred HHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHH
Q 005955 188 RQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (667)
Q Consensus 188 r~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 266 (667)
|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++|+++.+. ++.. +........+||.++|
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHH
Confidence 99998876 5779999999999999999886 45679999999999999887 3322 1122233579999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc-------------------ceEEeeecccCCcceEE
Q 005955 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-------------------QVRVEIESLFDGIDFSE 327 (667)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~i~i~~~~~~~~~~~ 327 (667)
+.|.+++... +..... ..-...++.+|+.+.... ...+. +.++.. +
T Consensus 182 ~~l~~~l~~~-----~~~~~~-----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~--~ 246 (373)
T smart00268 182 DYLKELLSER-----GYQFNS-----SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNT--I 246 (373)
T ss_pred HHHHHHHHhc-----CCCCCc-----HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCCCE--E
Confidence 9999886541 001100 011234555565543210 00111 112222 2
Q ss_pred EeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--CccCcceEEEecCccCcHHHHHHHHhHcCC-------CC
Q 005955 328 PLTRARF---EELNNDL-----FRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KE 390 (667)
Q Consensus 328 ~itr~~~---e~l~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~-------~~ 390 (667)
.+..+.| |.++.|. ...+.+.|.+++..+.. ...-.+.|+|+||+|++|.+.++|.+.+.. .+
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333332 2233331 23567777777776532 222346799999999999999999887721 12
Q ss_pred CCCCCCchhHHHhHHHHhhhh
Q 005955 391 PNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 391 v~~~~~p~~avA~GAa~~aa~ 411 (667)
+....++..++=.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 333445667888888888754
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.60 E-value=4.8e-15 Score=134.40 Aligned_cols=197 Identities=27% Similarity=0.386 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCC
Q 005955 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (667)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~Gg 234 (667)
.+.+.+++.+++++|.++.+..-++|..--....+...+..+.||++++..++||+|||.-.+++.. .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4668888999999999988888889988766667777788899999999999999999976665543 5999999
Q ss_pred ceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEE
Q 005955 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (667)
Q Consensus 235 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 314 (667)
|||-+++++-.+-. +..+...||..++..|+-+ |++++ ++||..|+.--..
T Consensus 150 GTTGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~----- 200 (277)
T COG4820 150 GTTGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG----- 200 (277)
T ss_pred CcceeEEEEcCcEE-----EeccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-----
Confidence 99999999855443 2456788998887766543 44444 6677777432111
Q ss_pred eeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCC
Q 005955 315 EIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394 (667)
Q Consensus 315 ~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~ 394 (667)
++.-..+.|++++..+.+.+-++..+ +..+.|+||+|.-|.+.+.+++.| +.++..+
T Consensus 201 -----------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P 257 (277)
T COG4820 201 -----------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLP 257 (277)
T ss_pred -----------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccC
Confidence 12223457888888888888888754 567999999999999999999999 8899999
Q ss_pred CCchhHHHhHHHHhh
Q 005955 395 VNPDEAVAYGAAVQG 409 (667)
Q Consensus 395 ~~p~~avA~GAa~~a 409 (667)
..|....-+|-|+-+
T Consensus 258 ~~p~y~TPLgIA~sg 272 (277)
T COG4820 258 QHPLYMTPLGIASSG 272 (277)
T ss_pred CCcceechhhhhhcc
Confidence 999988888887644
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.60 E-value=2e-13 Score=143.06 Aligned_cols=209 Identities=17% Similarity=0.228 Sum_probs=135.9
Q ss_pred CCCcEE--EEeCCCCCHHH-HHHHHHHHHHc------C------CceeeeecchHHHHHHhhcccC-------CCceEEE
Q 005955 171 KIKDAV--VTVPAYFNDAQ-RQATKDAGIIA------G------LNVARIINEPTAAAIAYGLDKK-------GGEKNIL 228 (667)
Q Consensus 171 ~~~~~v--iTVPa~~~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~AaAl~y~~~~~-------~~~~~vl 228 (667)
.+..++ ...|..+-..+ ++.+++..... | +..+.+++||.+|.+.+..+.. .....++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 58898774444 35666554221 1 1336679999999887766432 1345789
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcC
Q 005955 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (667)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 308 (667)
|+|+|+||||++++. ++.+. ....+....|..++.+.+.+.+... .++..+. . ..++++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~--~-------~~ie~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASIT--P-------YMLEKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCC--H-------HHHHHH---HHc
Confidence 999999999999996 33332 2334446789999888887775422 2333332 1 112222 211
Q ss_pred CcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCC
Q 005955 309 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 388 (667)
Q Consensus 309 ~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~ 388 (667)
. .+.+. .+.. +.+ ++++.++++++++++...|+..+.. ..+++.|+|+||++++ +++.|++.||+
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 222 4567778999999998888888854 3478999999999986 89999999975
Q ss_pred CCCCCCCCchhHHHhHHHHhhhhhcC
Q 005955 389 KEPNKGVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 389 ~~v~~~~~p~~avA~GAa~~aa~~s~ 414 (667)
. ....||..|.|+|...+|..+.+
T Consensus 316 ~--~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 V--EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred e--EEcCChHHHHHHHHHHHHHHHhc
Confidence 4 45679999999999999986654
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.51 E-value=3.1e-12 Score=138.28 Aligned_cols=223 Identities=17% Similarity=0.101 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCC----Cc
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG----GE 224 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~----~~ 224 (667)
-+....+++++..... .....-..+++|.|..++..+|+.+.+.+ +..+++-+.+..+|.+|++++...... ..
T Consensus 81 wd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~ 159 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGT 159 (414)
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCc
Confidence 3455566666543211 11222346899999999999999988865 556888899999999999886332211 13
Q ss_pred eEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Q 005955 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 304 (667)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (667)
.+-+|+|+|.|+|+++.+. ++.....+ .....+||.++++.|.+++.+. +..+... .....++.+|+
T Consensus 160 ~tglVVDiG~~~T~i~PV~--~G~~l~~~-~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe 226 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVV--DGYVIGSS-IKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKE 226 (414)
T ss_pred eeEEEEECCCCceEEEEEE--CCEEcccc-eEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHH
Confidence 4569999999999998775 23221111 1235799999999999886532 1122111 11234666676
Q ss_pred HhcCCc-----------------ceEEeeecccCCcceEEEeeHHHHH---HHHHHHH------HHHHHHHHHHHHHcCC
Q 005955 305 ALSSQH-----------------QVRVEIESLFDGIDFSEPLTRARFE---ELNNDLF------RKTMGPVKKAMEDAGL 358 (667)
Q Consensus 305 ~Ls~~~-----------------~~~i~i~~~~~~~~~~~~itr~~~e---~l~~~~~------~~i~~~i~~~l~~~~~ 358 (667)
.++... ...+.++...++....+.+..+.|. -++.|-+ ..+.+.|.++|.++..
T Consensus 227 ~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~ 306 (414)
T PTZ00280 227 KYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI 306 (414)
T ss_pred hcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh
Confidence 654311 0112222222234446777777664 3444532 1456777777776532
Q ss_pred --CccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 359 --EKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 359 --~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
...-.+.|+|+||+|.+|.+.++|++.+
T Consensus 307 d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 307 DCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 2334577999999999999999999887
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.40 E-value=2.2e-11 Score=126.88 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=127.3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeecchHHHHHHhhcccC---CCceEEEEEEcCCceeE
Q 005955 171 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFD 238 (667)
Q Consensus 171 ~~~~~viTVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AaAl~y~~~~~---~~~~~vlVvD~GggT~d 238 (667)
.+..+|+..|..+-..+++.+++..... -+..+.+++||.+|.+.+..+.. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998875532 23446789999999888765321 14567899999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeec
Q 005955 239 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES 318 (667)
Q Consensus 239 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 318 (667)
+.++. +..+ +....+....|..++-+.+.+. +.++++.....+.. ..+++ |.......+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~----i~~~~g~~~~~~~~-------~i~~~---l~~g~~~~~---- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAE----ISKDIGTPAYRDID-------RIDLA---LRTGKQPRI---- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHH----HHhhcCCCCccCHH-------HHHHH---HHhCCceee----
Confidence 98774 4433 3334445667877766666655 44455544111111 11111 111110000
Q ss_pred ccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCch
Q 005955 319 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPD 398 (667)
Q Consensus 319 ~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~ 398 (667)
.+.. +.|+ +.-+.....++.++..+...+. ...+++.|+|+||++. .+++.|++.||...+....||.
T Consensus 240 --~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 1111 1122 1112333344444444444442 1245889999999987 7889999999876666678999
Q ss_pred hHHHhHHHHhh
Q 005955 399 EAVAYGAAVQG 409 (667)
Q Consensus 399 ~avA~GAa~~a 409 (667)
.|.|+|-..+|
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988776
No 39
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.37 E-value=9.3e-11 Score=124.33 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchHHHHHHhh-----cccCCCce-EEEEEEcCCceeEEEEEEEeCCeEEEEEecCCC
Q 005955 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDT 258 (667)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~-----~~~~~~~~-~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~ 258 (667)
....+.+.++++.||+++..+..+|.|.+-.+. ........ .++++|+|+++|+++++.-....+ ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 466777888999999999999999999876653 22222233 499999999999999997333221 3345
Q ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHH
Q 005955 259 HLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELN 338 (667)
Q Consensus 259 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~ 338 (667)
.+||.++++.+.+. ++.+ ...||+.|...+.... .-.+++
T Consensus 217 ~~G~~~i~~~i~~~--------~~~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRA--------YGLN-----------PEEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHH--------cCCC-----------HHHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 69999999888643 2222 2678888865322110 013456
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC-------------------CCCc
Q 005955 339 NDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK-------------------GVNP 397 (667)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~-------------------~~~p 397 (667)
++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.| +.++.. ..+|
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 777777788888887643 223346899999999999999999999999 443311 1345
Q ss_pred hhHHHhHHHHhh
Q 005955 398 DEAVAYGAAVQG 409 (667)
Q Consensus 398 ~~avA~GAa~~a 409 (667)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 678888888764
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.35 E-value=1.6e-11 Score=132.43 Aligned_cols=311 Identities=18% Similarity=0.206 Sum_probs=180.1
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC-----ceeecHHHHHhhhhCCchhHHHHHHHhCCCC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKF 110 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 110 (667)
..+|-||+|+.++++++..+..|..+ +||++..... ...+|..+... .+.
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~-------------- 58 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN-------------- 58 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh--------------
Confidence 45789999999999999855555433 4887776543 34677663220 000
Q ss_pred CCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHH
Q 005955 111 EDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (667)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 190 (667)
.....| +.+| . +.-.+....+++++..... .....-..++++.|..++..+|+.
T Consensus 59 -------~~~~~p---------------~~~g--~-i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 59 -------LELRSP---------------IENG--V-IVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -------EEEEES---------------EETT--E-ESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHH
T ss_pred -------eeeeee---------------cccc--c-ccccccccccccccccccc-ccccccceeeeeccccCCchhhhh
Confidence 000011 1144 2 2223455666666665431 112334579999999999999998
Q ss_pred HHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHH
Q 005955 191 TKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (667)
Q Consensus 191 l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 269 (667)
+.+. .+..|++.+.++.+|.+|+++++.. +-+|+|+|.+.|.++.+. ++.. +........+||.++++.|
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHH
T ss_pred hhhhhhcccccceeeeeecccccccccccc------cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHH
Confidence 8775 4577999999999999999888644 459999999999988774 3322 1111223579999999999
Q ss_pred HHHHHHH-HHH--hcCCCCC----cCHHHHHHHHHHHHHHHHHhcC---------------CcceEEeeecccCCcceEE
Q 005955 270 MEYFIKL-IKK--KHGKDIS----KDKRAIGKLRREAERAKRALSS---------------QHQVRVEIESLFDGIDFSE 327 (667)
Q Consensus 270 ~~~l~~~-~~~--~~~~~~~----~~~~~~~~L~~~~e~~K~~Ls~---------------~~~~~i~i~~~~~~~~~~~ 327 (667)
.+.+.+. +.- .+..... ...-....-...++.+|+.+.. .....+.++ ++. .+
T Consensus 184 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i 258 (393)
T PF00022_consen 184 KELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TI 258 (393)
T ss_dssp HHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EE
T ss_pred HHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--cc
Confidence 8887763 100 0000000 0010011112334455554321 112222222 232 45
Q ss_pred EeeHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCC--ccCcceEEEecCccCcHHHHHHHHhHcCC-
Q 005955 328 PLTRARFEELNNDLFR----------------KTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG- 388 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~----------------~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sr~p~i~~~l~~~f~~- 388 (667)
.+..+.| .+.+.++. .+.+.|.+++...... ..-.+.|+|+||+|++|.+.++|.+.+..
T Consensus 259 ~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~ 337 (393)
T PF00022_consen 259 ILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSL 337 (393)
T ss_dssp EESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhh
Confidence 5555544 22333322 4667788888775432 22247899999999999999999887722
Q ss_pred ------CCCCCCC-CchhHHHhHHHHhhhhh
Q 005955 389 ------KEPNKGV-NPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 389 ------~~v~~~~-~p~~avA~GAa~~aa~~ 412 (667)
.++.... +|..++=.||+++|..-
T Consensus 338 ~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 338 LPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp SGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhccccceeccCchhhhhcccccceeeeccc
Confidence 2233444 78999999999999754
No 41
>PTZ00452 actin; Provisional
Probab=99.34 E-value=1.2e-10 Score=123.83 Aligned_cols=300 Identities=17% Similarity=0.164 Sum_probs=178.0
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC----------ceeecHHHHHhhhhCCchhHHHHHHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRL 105 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~l 105 (667)
...|-||+|+.++++++..+..|.++ +||+|..... ..++|++|.... . .
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~-----~-~------ 64 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR-----G-V------ 64 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc-----c-C------
Confidence 35689999999999999976666544 3777765422 234454442100 0 0
Q ss_pred hCCCCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCH
Q 005955 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (667)
Q Consensus 106 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~ 185 (667)
+ .-..| +.+|... --+.+..+++|+..... .....-..+++|-|...+.
T Consensus 65 ~------------~l~~P---------------i~~G~I~---dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~ 113 (375)
T PTZ00452 65 L------------AIKEP---------------IQNGIIN---SWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSK 113 (375)
T ss_pred c------------EEccc---------------CcCCEEc---CHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCH
Confidence 0 00011 1145222 23334456666543211 1233345789999999999
Q ss_pred HHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchH
Q 005955 186 AQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (667)
Q Consensus 186 ~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 264 (667)
.+|+.+.+. .+..+.+.+.+.+.|.+++++++. .+-+|+|+|.+.+.++-+. ++..-..+ .....+||.+
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~l~~~-~~r~~~gG~~ 184 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQIPQA-ITKINLAGRL 184 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEEeccc-eEEeeccchH
Confidence 999988775 456788888999999999988753 3569999999999988765 33221112 2235799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc----------------ceEEeeecccCCcceEEE
Q 005955 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVEIESLFDGIDFSEP 328 (667)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~i~~~~~~~~~~~~ 328 (667)
+++.|.+.+.+. +..+.... . ...++.+|+.++... .....+ -++. .+.
T Consensus 185 lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~--~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL---PDGN--ILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC---CCCC--EEE
Confidence 999888876431 11221111 0 123455565554211 011222 1222 345
Q ss_pred eeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC--CccCcceEEEecCccCcHHHHHHHHhHcCC-----C--CC
Q 005955 329 LTRARF---EELNNDLF-----RKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-----K--EP 391 (667)
Q Consensus 329 itr~~~---e~l~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~-----~--~v 391 (667)
+..+.| |-+++|.+ ..+.+.|.+++..+.. ...-.+.|+|+||+|.+|.+.++|++.+.. . ++
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 666665 23344432 2355667777766532 233457899999999999999999877621 1 23
Q ss_pred CCCCCchhHHHhHHHHhhh
Q 005955 392 NKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 392 ~~~~~p~~avA~GAa~~aa 410 (667)
..+.++..++=.|++++|.
T Consensus 330 ~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ecCCCcceeEEECchhhcC
Confidence 3344556677788888875
No 42
>PTZ00281 actin; Provisional
Probab=99.33 E-value=3.3e-11 Score=128.47 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEE
Q 005955 151 EISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (667)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlV 229 (667)
+....+++++..... .....-..+++|-|..++..+|+.+.+ ..+..+++.+.+...|.+++++++. .+-+|
T Consensus 81 d~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tglV 153 (376)
T PTZ00281 81 DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIV 153 (376)
T ss_pred HHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceEEE
Confidence 444556666553211 122334578899999999999999887 4567888889999999999987753 35699
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC
Q 005955 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (667)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 309 (667)
+|+|.+.|.++-+.-.-. +........+||.++++.|.+.+... +..+... . =...++.+|+.++..
T Consensus 154 VDiG~~~t~v~PV~dG~~---~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v 220 (376)
T PTZ00281 154 MDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTTT-A----EREIVRDIKEKLAYV 220 (376)
T ss_pred EECCCceEEEEEEEeccc---chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCcH-H----HHHHHHHHHHhcEEe
Confidence 999999999876542211 11122235799999999988876432 1111110 0 013456667765421
Q ss_pred c----------------ceEEeeecccCCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--ccCc
Q 005955 310 H----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQI 363 (667)
Q Consensus 310 ~----------------~~~i~i~~~~~~~~~~~~itr~~~---e~l~~~~~-----~~i~~~i~~~l~~~~~~--~~~i 363 (667)
. .....+ -++. .+.+..+.| |-+++|.+ ..+.+.|.+++..+... ..-.
T Consensus 221 ~~d~~~~~~~~~~~~~~~~~y~L---Pdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~ 295 (376)
T PTZ00281 221 ALDFEAEMQTAASSSALEKSYEL---PDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 295 (376)
T ss_pred cCCchHHHHhhhcCcccceeEEC---CCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHH
Confidence 1 011111 1222 345555544 33444432 24556677777665322 2335
Q ss_pred ceEEEecCccCcHHHHHHHHhHcC----C---CCCCCCCCchhHHHhHHHHhhhh
Q 005955 364 DEIVLVGGSTRIPKVQQLLKDYFD----G---KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 364 ~~ViLvGG~sr~p~i~~~l~~~f~----~---~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+.|+|+||+|.+|.+.++|++.+. . .++..+.++..++=+||+++|..
T Consensus 296 ~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 296 GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred hhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 789999999999999999887762 1 12334456678888899988863
No 43
>PTZ00004 actin-2; Provisional
Probab=99.32 E-value=8.9e-11 Score=125.35 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEE
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vl 228 (667)
-+....+++++....- ........+++|-|..++..+|+.+.+. .+..|++.+.+..+|.+|+++++. .+-+
T Consensus 80 ~d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tgl 152 (378)
T PTZ00004 80 WDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGI 152 (378)
T ss_pred HHHHHHHHHHHHHhhc-ccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEE
Confidence 3445566666433110 1122345688999999999999887775 567899999999999999988753 3569
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcC
Q 005955 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (667)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 308 (667)
|+|+|.+.|+++.+. ++.... ......++||.++++.|.+.+... +..+... . -...++.+|+.+..
T Consensus 153 VVDiG~~~t~v~pV~--dG~~l~-~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~c~ 219 (378)
T PTZ00004 153 VLDSGDGVSHTVPIY--EGYSLP-HAIHRLDVAGRDLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKLCY 219 (378)
T ss_pred EEECCCCcEEEEEEE--CCEEee-cceeeecccHHHHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhccee
Confidence 999999999998775 332221 222335799999999998886432 1111111 0 11234555655432
Q ss_pred Cc-----------------ceEEeeecccCCcceEEEeeHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC--Cc
Q 005955 309 QH-----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGL--EK 360 (667)
Q Consensus 309 ~~-----------------~~~i~i~~~~~~~~~~~~itr~~~---e~l~~~~------~~~i~~~i~~~l~~~~~--~~ 360 (667)
.. ...+.+ -++. .+.+..+.| |-++.|- ...+.+.|.+++.++.. .+
T Consensus 220 v~~d~~~~~~~~~~~~~~~~~~y~l---Pdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~ 294 (378)
T PTZ00004 220 IALDFDEEMGNSAGSSDKYEESYEL---PDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRK 294 (378)
T ss_pred ecCCHHHHHhhhhcCccccceEEEC---CCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHH
Confidence 10 111222 2232 344555554 2345553 23456777777776532 22
Q ss_pred cCcceEEEecCccCcHHHHHHHHhHcCC-------CCCCCCCCchhHHHhHHHHhhh
Q 005955 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p~i~~~l~~~f~~-------~~v~~~~~p~~avA~GAa~~aa 410 (667)
.-.+.|+|+||+|.+|.+.++|...+.. .++....++..++=.||+++|.
T Consensus 295 ~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 295 DLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 3357899999999999999999887721 1233345667777788888875
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.31 E-value=4.6e-11 Score=125.83 Aligned_cols=179 Identities=21% Similarity=0.296 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchHHHHHHhhccc-----CCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCC
Q 005955 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK-----KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 259 (667)
Q Consensus 185 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~-----~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~ 259 (667)
....+...++++.||+++..+=-+|.|.+-.+.... ......++++|+|+.++.++++. ++.+.. .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEe
Confidence 455667788899999998877667777554443321 11346799999999999999987 443222 22357
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHH
Q 005955 260 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (667)
Q Consensus 260 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~ 339 (667)
+||.++++.+++.+ +.+ ..++|..|..-+... +...+.+.
T Consensus 210 ~G~~~l~~~i~~~~--------~i~-----------~~~Ae~~k~~~~l~~---------------------~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIAREL--------GID-----------FEEAEELKRSGGLPE---------------------EYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHT--------T-------------HHHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhc--------CCC-----------HHHHHHHHhcCCCCc---------------------chHHHHHH
Confidence 99999999998663 222 156677765421111 23456677
Q ss_pred HHHHHHHHHHHHHHHH--cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCC---------CCC----------Cch
Q 005955 340 DLFRKTMGPVKKAMED--AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN---------KGV----------NPD 398 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~---------~~~----------~p~ 398 (667)
+.++++...|.+.++- .......|+.|+|+||++++|.+.+.|++.+ +.++. ... .|.
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 7788888888888773 2334567999999999999999999999999 54331 111 267
Q ss_pred hHHHhHHHHhh
Q 005955 399 EAVAYGAAVQG 409 (667)
Q Consensus 399 ~avA~GAa~~a 409 (667)
.++|.|.|+.+
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 79999999864
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.24 E-value=4.4e-10 Score=119.64 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEE
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vl 228 (667)
-+....+++++.+... ....-..+++|-|..++..+|+.+.+. .+..+++.+.+..+|.+|+++++. .+-+
T Consensus 86 wd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tgl 157 (380)
T PTZ00466 86 WNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNGT 157 (380)
T ss_pred HHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceEE
Confidence 3445556666653221 222345788999999999999998775 566788889999999999988753 3569
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcC
Q 005955 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (667)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 308 (667)
|+|+|.+.|.++-+. ++... ........+||.++++.|.+.+.+. +..... . .-+..++.+|+.++.
T Consensus 158 VVD~G~~~t~v~PV~--~G~~~-~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~ 224 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--EGYSI-TNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCY 224 (380)
T ss_pred EEeCCCCceEEEEEE--CCEEe-ecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeE
Confidence 999999999987665 33221 1122235799999999988876431 111111 0 112345566665532
Q ss_pred Cc---------------ceEEeeecccCCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC--CccCc
Q 005955 309 QH---------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGL--EKNQI 363 (667)
Q Consensus 309 ~~---------------~~~i~i~~~~~~~~~~~~itr~~~---e~l~~~~~-----~~i~~~i~~~l~~~~~--~~~~i 363 (667)
.. ...+.+ -++ ..+.+..+.| |-++.|-+ ..+.+.|.+.+.++.. .+.-.
T Consensus 225 v~~d~~~e~~~~~~~~~~~~y~L---Pdg--~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~ 299 (380)
T PTZ00466 225 VSFNMNKEKNSSEKALTTLPYIL---PDG--SQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLY 299 (380)
T ss_pred ecCChHHHHhhccccccceeEEC---CCC--cEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHh
Confidence 10 011111 122 2345566555 33444422 2355666677766532 23345
Q ss_pred ceEEEecCccCcHHHHHHHHhHcCC-------CCCCCCCCchhHHHhHHHHhhh
Q 005955 364 DEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 364 ~~ViLvGG~sr~p~i~~~l~~~f~~-------~~v~~~~~p~~avA~GAa~~aa 410 (667)
..|+|+||+|.+|.+.++|++.+.. .++....++..++=+||+++|.
T Consensus 300 ~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 300 SHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 7899999999999999999887721 1233344666777788888875
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.13 E-value=3.8e-10 Score=117.27 Aligned_cols=174 Identities=20% Similarity=0.323 Sum_probs=97.0
Q ss_pred ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHh
Q 005955 201 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 280 (667)
Q Consensus 201 ~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 280 (667)
..+.+++||.||.+.+..... +...++|+|+||+|+|++++. ++.-.+....+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~---- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA---- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh----
Confidence 457789999999998865533 246789999999999999886 2211222334445788888777776654431
Q ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 005955 281 HGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360 (667)
Q Consensus 281 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~ 360 (667)
+... +......+.... .-+..++. .....+ ..+++.++++..++++.+.|.+.+.+ .
T Consensus 214 -~~~~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~ 270 (318)
T PF06406_consen 214 -GIDT--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEEAVEELINRILRELGD----F 270 (318)
T ss_dssp -SBHH--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred -cCCC--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----h
Confidence 1000 000001111000 00000000 000000 13344555555555555555555532 3
Q ss_pred cCcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCCCchhHHHhHHH
Q 005955 361 NQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAA 406 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAa 406 (667)
.+++.|+|+||++. .+.+.|++.|+ ..++....||+.|.|+|-+
T Consensus 271 ~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 SDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 46789999999965 88999999985 3456778899999999964
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.02 E-value=1.8e-08 Score=101.14 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=107.9
Q ss_pred eeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q 005955 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (667)
Q Consensus 204 ~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 283 (667)
..++|.+|.+.+.....+. .-.|+|+||..+.+..++ ++...-.........|+..|.+.+++. ++.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~---~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~--------l~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE---ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARR--------LGV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCCC---CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHH--------cCC
Confidence 3577888876655433322 225999999999988887 455444445566677888777776654 333
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcC----CcceEEeeec-ccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 005955 284 DISKDKRAIGKLRREAERAKRALSS----QHQVRVEIES-LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 358 (667)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~Ls~----~~~~~i~i~~-~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~ 358 (667)
++ ++++..+..-.. +....+..+. .... +....+ .++++..+++.+...+.+.+....
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 32 333443333111 1112222110 0000 000112 356677777777777777665533
Q ss_pred CccCcc-eEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHh
Q 005955 359 EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 359 ~~~~i~-~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~ 408 (667)
++ .|+++||.+++|+|.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 788888899999999999973
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=4e-07 Score=90.36 Aligned_cols=155 Identities=18% Similarity=0.250 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhhc--cc---CCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCc
Q 005955 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGL--DK---KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG 261 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~--~~---~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 261 (667)
......+|++.||+....+=-|.-|.--+|.. .+ ......++|+|+|+..+.+.++.-+...+ .....+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCc
Confidence 34455689999999987776777776555541 11 11223478999999999999998555443 3456799
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHH
Q 005955 262 GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDL 341 (667)
Q Consensus 262 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~ 341 (667)
|+.+++.+.+. |+.+. ..++.+|....... +--.++..++
T Consensus 225 ~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f 264 (354)
T COG4972 225 TDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPF 264 (354)
T ss_pred HHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHH
Confidence 99999887654 33333 45566665433221 2224566777
Q ss_pred HHHHHHHHHHHHHHc--CCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 342 FRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 342 ~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
++.+.+.|.+.|+-- .-...+|+.|+|.||++.+-.+.+.+.+.+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 777777777777642 234567999999999999999999999998
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.90 E-value=3.7e-08 Score=98.89 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEE
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vl 228 (667)
-++..+.++|..+... .......-++||-|++=+.+.|+.+.++ .+...++...|..+|+++|++.| ..+.+
T Consensus 85 WD~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rstal 157 (426)
T KOG0679|consen 85 WDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG------RSTAL 157 (426)
T ss_pred HHHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC------CCceE
Confidence 4666677777664222 1233345789999988888889888775 56778888899999999999875 44679
Q ss_pred EEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHH
Q 005955 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (667)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 276 (667)
|+|+|++++.++-+. +|.+-..+... ..+||..++..+.+.|..+
T Consensus 158 VvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 158 VVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 999999999988765 34333333333 5799999999999988765
No 50
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.73 E-value=9.5e-07 Score=88.51 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=95.4
Q ss_pred eeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCc-chHHHHHHHHHHHHHHHHhcC
Q 005955 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG-GEDFDQRVMEYFIKLIKKKHG 282 (667)
Q Consensus 204 ~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lG-G~~id~~l~~~l~~~~~~~~~ 282 (667)
..++|.+|.|.......+ ++.-.|+|+||-.+-+..+. .++.+.-......+.-| |+.++. +++ ..+
T Consensus 106 ~~v~EItaha~Ga~~~~p--p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~-~A~--------~Lg 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG--NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEV-ISD--------LMQ 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC--CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHH-HHH--------HcC
Confidence 358999998876544321 12337999999876655442 23443333333333344 343333 222 233
Q ss_pred CCCCcCHHHHHHHHHHHHHHH-HHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 005955 283 KDISKDKRAIGKLRREAERAK-RALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKN 361 (667)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K-~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~ 361 (667)
+++. .+.. .+.+.+ .-..-+..+.+..+.-.- .-+.--.++ ++++..+...+...+...+++.++.
T Consensus 174 i~le----el~~---~a~~~~~~p~~Iss~CtVFAeSevi-~l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~-- 240 (293)
T TIGR03192 174 IPIA----DLGP---RSFDVETEPEAVSSICVVFAKSEAL-GLLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE-- 240 (293)
T ss_pred CCHH----HHHH---HHHhcCCCCCCcCCcceEeccHhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC--
Confidence 3321 1111 111111 111112222332221000 000011233 3444455555555555555443322
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCCCCC-CCCCchhHHHhHHHHhhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~-~~~~p~~avA~GAa~~aa~ 411 (667)
..|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+.|+|||++|..
T Consensus 241 --~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 --EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred --CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 35999999999999999999999 67776 5778999999999999853
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.72 E-value=3.9e-07 Score=97.73 Aligned_cols=126 Identities=12% Similarity=0.072 Sum_probs=82.9
Q ss_pred CCceeeeCHHHHHHHHHHHHHHHH-HHHhcCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHhhc
Q 005955 141 DGETKVFSPEEISAMILTKMKETA-EAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGL 218 (667)
Q Consensus 141 ~g~~~~~~~~ev~~~~L~~l~~~a-~~~~~~~~~~~viTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AaAl~y~~ 218 (667)
+|....++ ....+.+|+...- .......-..+++|-|..+...+|..+.+ ..+...++.+.+..++.+++.+.+.
T Consensus 77 ~g~i~~W~---~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~ 153 (444)
T COG5277 77 NGIILNWD---AMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGS 153 (444)
T ss_pred cCccCCcH---HHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCC
Confidence 45434443 3334455544432 11112233479999999999999987776 4566777777788888888777654
Q ss_pred ccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHH
Q 005955 219 DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (667)
Q Consensus 219 ~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 276 (667)
.. .+.+|+|+|.+.|+++-+--.-. +........+||++++..|.+.+...
T Consensus 154 ~~----~~g~ViD~G~~~t~v~PV~DG~~---l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 154 SD----ETGLVIDSGDSVTHVIPVVDGIV---LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred CC----CceEEEEcCCCceeeEeeecccc---ccccceeeecCcHHHHHHHHHHHhhc
Confidence 32 36799999999999987653221 11122335799999999998887763
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.69 E-value=1.2e-06 Score=91.19 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 335 EELNNDLFRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
++++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 44444555555444443 34433222 34999999999999999999999 78898999999999999999984
No 53
>PRK10331 L-fuculokinase; Provisional
Probab=98.66 E-value=4.6e-06 Score=92.10 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=56.2
Q ss_pred eeHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 329 LTRARFEELNNDLFRKTMGPVK---KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
-+|.++. +.+++.+.-.++ +.+++.+ ...++.|.++||+++++.+.+++.+.| +.+|.... ..++.++||
T Consensus 358 ~~~~~l~---rAvlEgia~~~~~~~~~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~Ga 430 (470)
T PRK10331 358 TTRGHFY---RAALEGLTAQLKRNLQVLEKIG--HFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGA 430 (470)
T ss_pred cCHHHHH---HHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHH
Confidence 3555544 444444443333 3444322 234789999999999999999999999 78886554 456889999
Q ss_pred HHhhhhhcCC
Q 005955 406 AVQGGILSGE 415 (667)
Q Consensus 406 a~~aa~~s~~ 415 (667)
|+.|+.-.+.
T Consensus 431 A~la~~~~G~ 440 (470)
T PRK10331 431 AMFGWYGVGE 440 (470)
T ss_pred HHHHHHhcCC
Confidence 9999876553
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.58 E-value=5.1e-06 Score=84.33 Aligned_cols=179 Identities=23% Similarity=0.228 Sum_probs=101.5
Q ss_pred eeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q 005955 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (667)
Q Consensus 204 ~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 283 (667)
..++|-+|-+.+.....+. .-.|+|+||--..+..+. ++.+.-.....-+.-|.-.|=+. +.+..+.
T Consensus 211 ~~~~Ei~ah~kgA~~f~p~---~dtIiDIGGQD~K~i~i~--dG~v~df~mN~~CAAGtGrFLE~--------~A~~Lgv 277 (396)
T COG1924 211 KVVVEISAHAKGARYFAPD---VDTVIDIGGQDSKVIKLE--DGKVDDFTMNDKCAAGTGRFLEV--------IARRLGV 277 (396)
T ss_pred cceeeeehhHHHHHHhCCC---CcEEEEecCcceeEEEEe--CCeeeeeEeccccccccchHHHH--------HHHHhCC
Confidence 4566777765554333322 117999999766655554 66555444444333332222222 2233344
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCccC
Q 005955 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK-AMEDAGLEKNQ 362 (667)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~-~l~~~~~~~~~ 362 (667)
++. .|-+.+++.+..-.-+..+.+..++-. .+..=.-...|+++..+...+.+.+.. +++......
T Consensus 278 ~v~-------E~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~-- 344 (396)
T COG1924 278 DVE-------ELGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE-- 344 (396)
T ss_pred CHH-------HHHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC--
Confidence 331 122223333321112222222222100 000000123567777777777666555 555533322
Q ss_pred cceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
-|+|+||.+....+.+++++.+ +.++..+.+|+..-|.|||++|..
T Consensus 345 --~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 345 --PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred --CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 2999999999999999999999 799999999999999999999853
No 55
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.56 E-value=6.7e-06 Score=90.60 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=58.0
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
.-+|.++...+-+-+.-....+.+.+++.+ ...++.|.++||++++|.+.+++.+.| +.+|....+ .++.++|||+
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHH
Confidence 335555444433333333444445555542 124788999999999999999999999 788865544 4688999999
Q ss_pred hhhhhcCC
Q 005955 408 QGGILSGE 415 (667)
Q Consensus 408 ~aa~~s~~ 415 (667)
.|+.-.+.
T Consensus 437 ~a~~a~G~ 444 (465)
T TIGR02628 437 FGFYGVGE 444 (465)
T ss_pred HHHHhcCc
Confidence 99876553
No 56
>PRK15027 xylulokinase; Provisional
Probab=98.56 E-value=1.1e-05 Score=89.59 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHh
Q 005955 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~ 408 (667)
.+|.+|...+-+-+.-....+.+.+++.+. .++.|+++||+++++.+.+++.+.+ +.+|....+.+++.++|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHH
Confidence 356555544433333333444455555443 4788999999999999999999999 888866556677889999999
Q ss_pred hhhhcCC
Q 005955 409 GGILSGE 415 (667)
Q Consensus 409 aa~~s~~ 415 (667)
|+.-.+.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9876553
No 57
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.56 E-value=3.3e-07 Score=96.48 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=57.9
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHH--------HcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAGI--------IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa~--------~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
.-.+||.++..-...++.+..+.. .||++...++. |.|++.+... . ++...++++|+|||||+++++.-
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs-e-Eke~gVa~IDIGgGTT~iaVf~~ 165 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS-E-ERNTRVLNIDIGGGTANYALFDA 165 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh-h-hccCceEEEEeCCCceEEEEEEC
Confidence 346788886555444444443221 26777666666 9888887653 3 45778999999999999999984
Q ss_pred eCCeEEEEEecCCCCCcchHHHH
Q 005955 245 DNGVFEVLSTNGDTHLGGEDFDQ 267 (667)
Q Consensus 245 ~~~~~~v~~~~~~~~lGG~~id~ 267 (667)
..-. ..+..++||+.++.
T Consensus 166 G~l~-----~T~~l~vGG~~IT~ 183 (475)
T PRK10719 166 GKVI-----DTACLNVGGRLIET 183 (475)
T ss_pred CEEE-----EEEEEecccceEEE
Confidence 3322 23346788888753
No 58
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.55 E-value=1.4e-05 Score=91.02 Aligned_cols=326 Identities=19% Similarity=0.293 Sum_probs=182.7
Q ss_pred eeecHHHHHhhh----hCCchhHHHHHHHhCCC--------CCCHHH--HHh--hccCCe-EEEccCCcceEEE-EEe--
Q 005955 81 RLIGEAAKNQAA----VNPDRTIFDVKRLIGRK--------FEDKEV--QRD--MKLAPY-KIVNRDGKPYIQV-QIR-- 140 (667)
Q Consensus 81 ~~~G~~A~~~~~----~~~~~~~~~~k~llg~~--------~~~~~~--~~~--~~~~~~-~~~~~~~~~~~~v-~~~-- 140 (667)
..+|.+|..... ......+.+-||+|+.. |+.... +.+ ....|+ ..+++.|.+...+ ...
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 457888766543 23344566788998753 211110 000 111222 2234556554443 110
Q ss_pred -CCceeeeCHHHHHHHHHHHHHHHHHHHhc--------------CCCCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q 005955 141 -DGETKVFSPEEISAMILTKMKETAEAFLG--------------KKIKDAVVTVPAYFNDAQRQATKDAGIIA------- 198 (667)
Q Consensus 141 -~g~~~~~~~~ev~~~~L~~l~~~a~~~~~--------------~~~~~~viTVPa~~~~~qr~~l~~Aa~~A------- 198 (667)
-.-...|+-..+..++|..|..+|..+++ ...+.+++|||......+|+.+++.++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01113467788888888888888866553 23457999999999999999988877654
Q ss_pred -CCc--------------------eeee-ecchHHHHHHhhcc------------------cCC----------CceEEE
Q 005955 199 -GLN--------------------VARI-INEPTAAAIAYGLD------------------KKG----------GEKNIL 228 (667)
Q Consensus 199 -Gl~--------------------~~~l-i~Ep~AaAl~y~~~------------------~~~----------~~~~vl 228 (667)
|+. .+.+ -+|.+|.-+-|.++ +.. +.-.|+
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 432 1111 35666654433221 111 233689
Q ss_pred EEEcCCceeEEEEEEEe----CCeEEEEEe----cCCCCCcchHHHHHHHH-HHHHHHHHh----------------cCC
Q 005955 229 VFDLGGGTFDVSILTID----NGVFEVLST----NGDTHLGGEDFDQRVME-YFIKLIKKK----------------HGK 283 (667)
Q Consensus 229 VvD~GggT~dvsv~~~~----~~~~~v~~~----~~~~~lGG~~id~~l~~-~l~~~~~~~----------------~~~ 283 (667)
-+||||||||+.|-++. .+.-..+.. ..+..+.|.|+=..+.+ ++...+.+. +|.
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 99999999999998876 222111111 22356788888665544 444433332 222
Q ss_pred CCCcCH-H-------------HHHHHHHHHHHHHHHhcCCcceEEeeeccc---------------------------CC
Q 005955 284 DISKDK-R-------------AIGKLRREAERAKRALSSQHQVRVEIESLF---------------------------DG 322 (667)
Q Consensus 284 ~~~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~---------------------------~~ 322 (667)
+-.... + ...+++.++|..-.. +........+..+. +=
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 200000 0 011223333332110 00001111111111 11
Q ss_pred cceEEEeeHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCC--------
Q 005955 323 IDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP-------- 391 (667)
Q Consensus 323 ~~~~~~itr~~~e~l~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v-------- 391 (667)
.++.+.|+..++...+. -.+...+..+-+++.. .+.|-++|+|--||.|.|+..+++..| .++
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~ 802 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHG 802 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCC
Confidence 35567889999888775 5666666666666665 335789999999999999999999983 221
Q ss_pred ------------CCCCCchhHHHhHHHHhhhhhc
Q 005955 392 ------------NKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 392 ------------~~~~~p~~avA~GAa~~aa~~s 413 (667)
.+--||...||.||.+.+....
T Consensus 803 Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 803 YRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 1334899999999998775443
No 59
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.49 E-value=4.8e-06 Score=85.59 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=97.7
Q ss_pred eeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEe-CCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC
Q 005955 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 282 (667)
Q Consensus 204 ~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 282 (667)
.+++|.+|-|.......+ +.-.|+|+||-.+.+ +.++ ++.+.-......+.-|.-.|=+.++ +..+
T Consensus 249 ~vitEItcHA~GA~~l~P---~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA--------~~Lg 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP---GTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIA--------DEMN 315 (432)
T ss_pred ceeeeHHHHHHHHHHHCC---CCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHH--------HHcC
Confidence 456899998876644432 334799999987775 4443 3444333333333344333322222 2233
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Q 005955 283 KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQ 362 (667)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~ 362 (667)
.++. .|-..+.+.+....-+..+.+.-+.-.-. -+.--+++ ++++..+...+...+...+.+.. ..
T Consensus 316 i~le-------El~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i 381 (432)
T TIGR02259 316 MGLH-------ELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG---GI 381 (432)
T ss_pred CCHH-------HHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 3321 11122223322222223333332210000 00011233 44455555555555555555431 11
Q ss_pred cceEEEecCccCcHHHHHHHHhHcC----CCCCCCCCCchhHHHhHHHHhh
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f~----~~~v~~~~~p~~avA~GAa~~a 409 (667)
-..|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+.|+|||++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 2469999999999999999999994 4567788999999999999985
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.48 E-value=1.4e-05 Score=79.11 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCC----CCCCCCchhHHHhHHHHhh
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~----v~~~~~p~~avA~GAa~~a 409 (667)
++++..+...+...+...+++.+.. -..|+|+||.++.+.+.+.+++.+++.+ +..+.+|+.+.|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 4455555555555555555543211 1359999999999999999999884333 5556789999999999975
No 61
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.48 E-value=1.1e-05 Score=89.59 Aligned_cols=80 Identities=24% Similarity=0.213 Sum_probs=51.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhh
Q 005955 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~a 409 (667)
+|.++...+-+-+.-......+.|++. ....++.|.++||++|++++.+++.+.+ +.++..+.. .|+.+.|+|..+
T Consensus 371 ~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~~ 446 (502)
T COG1070 371 TRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAALA 446 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHHH
Confidence 555555444444433344444555554 2244678999999999999999999999 788875433 455555555555
Q ss_pred hhhc
Q 005955 410 GILS 413 (667)
Q Consensus 410 a~~s 413 (667)
+...
T Consensus 447 ~~~~ 450 (502)
T COG1070 447 AAAL 450 (502)
T ss_pred HHHh
Confidence 4433
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.39 E-value=8.9e-05 Score=82.70 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHH-cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 335 EELNNDLFRKTMGPVKKA---MED-AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~---l~~-~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
..+++.+++.+.-.+... +.+ .+ ..++.|.++||+++++.+.+++.+.| +.+|....+ .++.++|||+.|+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~ 447 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGL 447 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHH
Confidence 344555555554444333 322 33 24789999999999999999999999 788865544 4688999999998
Q ss_pred hhcC
Q 005955 411 ILSG 414 (667)
Q Consensus 411 ~~s~ 414 (667)
.-.+
T Consensus 448 ~~~G 451 (505)
T TIGR01314 448 KALG 451 (505)
T ss_pred HhcC
Confidence 6554
No 63
>PLN02295 glycerol kinase
Probab=98.27 E-value=8.4e-05 Score=82.95 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---Hc-CC--CccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHh
Q 005955 335 EELNNDLFRKTMGPVKKAME---DA-GL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~---~~-~~--~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~ 408 (667)
.++++.+++.+.-.++..++ +. +. ....++.|.++||++++|.+.+++.+.| +.+|... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 34444555555444444443 32 21 1235788999999999999999999999 8888554 4567899999999
Q ss_pred hhhhcCC
Q 005955 409 GGILSGE 415 (667)
Q Consensus 409 aa~~s~~ 415 (667)
|+.-.+.
T Consensus 457 A~~~~G~ 463 (512)
T PLN02295 457 AGLAVGL 463 (512)
T ss_pred HHhhcCc
Confidence 9766553
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=98.26 E-value=0.00016 Score=73.10 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=42.1
Q ss_pred cceEEEec-CccCcHHHHHHHHhHcC--CCCCCCCCCchhHHHhHHHHhhh
Q 005955 363 IDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 363 i~~ViLvG-G~sr~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAa~~aa 410 (667)
+..|+++| |.++.|.+++.+.+.+. +.++..+.||+.+.|.|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56899999 79999999999998873 56777889999999999999875
No 65
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.25 E-value=0.00015 Score=80.79 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcC
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~ 414 (667)
.+++.+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.| +.+|.... ..++.++|||+.|+.-.+
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 3444555555444444443321 11123788999999999999999999999 88886554 556889999999987655
Q ss_pred C
Q 005955 415 E 415 (667)
Q Consensus 415 ~ 415 (667)
.
T Consensus 457 ~ 457 (504)
T PTZ00294 457 V 457 (504)
T ss_pred c
Confidence 4
No 66
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.21 E-value=0.00022 Score=79.24 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
..+++.+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhc
Confidence 33444444444444433333321 11234788999999999999999999999 7888654 456788999999998765
Q ss_pred CC
Q 005955 414 GE 415 (667)
Q Consensus 414 ~~ 415 (667)
+.
T Consensus 449 G~ 450 (493)
T TIGR01311 449 GY 450 (493)
T ss_pred Cc
Confidence 53
No 67
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.18 E-value=0.00015 Score=80.67 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
..+++.+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.| +.+|... ...++.|+|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 33444555555444444333321 11224788999999999999999999999 7888654 455788999999998765
Q ss_pred CC
Q 005955 414 GE 415 (667)
Q Consensus 414 ~~ 415 (667)
+.
T Consensus 453 G~ 454 (498)
T PRK00047 453 GF 454 (498)
T ss_pred Cc
Confidence 53
No 68
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.09 E-value=9.4e-05 Score=76.78 Aligned_cols=208 Identities=19% Similarity=0.219 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEc
Q 005955 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDL 232 (667)
Q Consensus 154 ~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~ 232 (667)
..+..|+...-.. .......+++|-|..|....|+.+.+.. +..+.+-+.+ .--|.. |+..+ .+=+|+|+
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavl--ya~g~----ttG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVL--YASGR----TTGLVVDS 152 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHH--HHcCC----eeEEEEEc
Confidence 5566666522111 1123357999999999999999888754 3333333333 222323 43332 34589999
Q ss_pred CCceeEEE-EEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc-
Q 005955 233 GGGTFDVS-ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH- 310 (667)
Q Consensus 233 GggT~dvs-v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~- 310 (667)
|.|-+.+. +++ + +.+........+||++++..+...|.+ .+....... -+.-++.+|+.++...
T Consensus 153 G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyval 218 (372)
T KOG0676|consen 153 GDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVAL 218 (372)
T ss_pred CCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhccccc
Confidence 99977554 443 2 111122334679999998866665544 221221110 0122444555543211
Q ss_pred -----------ceEEeeec-ccCCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHH--cCCCccCcceEEE
Q 005955 311 -----------QVRVEIES-LFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMED--AGLEKNQIDEIVL 368 (667)
Q Consensus 311 -----------~~~i~i~~-~~~~~~~~~~itr~~~---e~l~~~~~-----~~i~~~i~~~l~~--~~~~~~~i~~ViL 368 (667)
...+.... +-++.. +.+.-+.| |-+++|.+ ..+-+.+-+.+-+ .++.+.-...|+|
T Consensus 219 d~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivL 296 (372)
T KOG0676|consen 219 DFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVL 296 (372)
T ss_pred ccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEE
Confidence 11111110 112221 34443333 22233222 1122223332222 2333445678999
Q ss_pred ecCccCcHHHHHHHHhHc
Q 005955 369 VGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 369 vGG~sr~p~i~~~l~~~f 386 (667)
+||++-.|++.+++.+.+
T Consensus 297 sGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 297 SGGTTMFPGLADRLQKEL 314 (372)
T ss_pred eCCcccchhHHHHHHHHH
Confidence 999999999999988876
No 69
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.02 E-value=7.7e-05 Score=72.54 Aligned_cols=192 Identities=21% Similarity=0.226 Sum_probs=103.5
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
..+..|.++.-.=.|+.+|.+.....+.. +...+++|+|||+||.+++.-++... .+...| .|+-++..+..
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPGt-~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlAG----AG~mVTmlI~s-- 175 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPGT-DKPLAILDMGGGSTDASIINRDGEVT-AIHLAG----AGNMVTMLINS-- 175 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHHHHHHHH--
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCCC-CCCeEEEecCCCcccHHHhCCCCcEE-EEEecC----CchhhHHHHHH--
Confidence 34556888777788999999987655543 66789999999999999997655432 221121 34555544432
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC----------c-ceEEeeeccc-----------CC--cceEEEe
Q 005955 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----------H-QVRVEIESLF-----------DG--IDFSEPL 329 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~-~~~i~i~~~~-----------~~--~~~~~~i 329 (667)
..|.+- +.-+|.+|+.--.. + ...+.-+.+. ++ .++...+
T Consensus 176 ------ELGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 176 ------ELGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp ------HCT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred ------hhCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 233321 25677777742111 0 1111000000 01 1111122
Q ss_pred eHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CCccCcceEEEecCccCcHHHHHHHHhHcCCC-------CCCCCCCchh
Q 005955 330 TRARFEELNNDLFRKT-MGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-------EPNKGVNPDE 399 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i-~~~i~~~l~~~~--~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~-------~v~~~~~p~~ 399 (667)
+-+++..+-+..-+++ ..-..++|++.. -+..+|+.|+|+||++.---|.+++.+.+..- ++.-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3333333333333332 223445555432 22357899999999999888899999888433 3444556888
Q ss_pred HHHhHHHHhh
Q 005955 400 AVAYGAAVQG 409 (667)
Q Consensus 400 avA~GAa~~a 409 (667)
|||.|.++..
T Consensus 320 AVATGLvlsy 329 (332)
T PF08841_consen 320 AVATGLVLSY 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 70
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.65 E-value=0.016 Score=63.00 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=53.3
Q ss_pred eEEEeeHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCC----------
Q 005955 325 FSEPLTRARFEELNNDL---FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP---------- 391 (667)
Q Consensus 325 ~~~~itr~~~e~l~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v---------- 391 (667)
+.+.|.-.++++.+-.. +......+-+++.- .+-|.++|+|--+|.|.++..++...| .++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 33455656665544433 33333333444333 345789999999999999999988773 221
Q ss_pred ----------CCCCCchhHHHhHHHHhhhhh
Q 005955 392 ----------NKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 392 ----------~~~~~p~~avA~GAa~~aa~~ 412 (667)
-+-.||...+|.||.+.+..+
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 223489999999999887654
No 71
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.59 E-value=0.00032 Score=74.35 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=55.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---ecchHHHHHHhhcccC--CCceEEEEEEcCCceeEEEEEEEeCCe
Q 005955 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKK--GGEKNILVFDLGGGTFDVSILTIDNGV 248 (667)
Q Consensus 174 ~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AaAl~y~~~~~--~~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (667)
-++||==+.-.+.+|..+...+..||==++.- =.|+.-|+-..|.... .....|+=+|+||||+.+++++-.+
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 35677777777888888888888887322221 2344445443332221 1466789999999999999998432
Q ss_pred EEEEEecCCCCCcchHH
Q 005955 249 FEVLSTNGDTHLGGEDF 265 (667)
Q Consensus 249 ~~v~~~~~~~~lGG~~i 265 (667)
++++ +..++||+.+
T Consensus 165 --v~~T-~cl~IGGRLi 178 (473)
T PF06277_consen 165 --VIDT-ACLDIGGRLI 178 (473)
T ss_pred --EEEE-EEEeeccEEE
Confidence 2222 2357888765
No 72
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.43 E-value=0.005 Score=59.24 Aligned_cols=196 Identities=19% Similarity=0.189 Sum_probs=113.2
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCe
Q 005955 170 KKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGV 248 (667)
Q Consensus 170 ~~~~~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (667)
.....+.+|-|.--....|+.|-+. .+.-|+.-+.+.-...-+.++-|+. .=+|+|-|-|-|-++-+-- +-.
T Consensus 99 p~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~------tGvVvDSGDGVTHi~PVye-~~~ 171 (389)
T KOG0677|consen 99 PTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL------TGVVVDSGDGVTHIVPVYE-GFV 171 (389)
T ss_pred CccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc------ceEEEecCCCeeEEeeeec-cee
Confidence 3445789999998888889888775 5677888766644333333332322 2379999999988775431 111
Q ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC-----------cceEEeee
Q 005955 249 FEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIE 317 (667)
Q Consensus 249 ~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~ 317 (667)
+.. -.+...+.|+++++-|.+.+..+ .|...-+.+ .+.....|+.|+.. .++.+-++
T Consensus 172 l~H--LtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 172 LPH--LTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred hhh--hhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 111 12335678999999888876532 232222221 14455666666421 11222222
Q ss_pred c--ccCCcceEEEeeHHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCC--ccCcceEEEecCccCcHHHHHHHHhH
Q 005955 318 S--LFDGIDFSEPLTRARFE---ELNNDLFR-----KTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDY 385 (667)
Q Consensus 318 ~--~~~~~~~~~~itr~~~e---~l~~~~~~-----~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sr~p~i~~~l~~~ 385 (667)
. +-+|. .+++-.+.|| .+++|.+- .+.+++-.+++.+.++ ..-..+|+|.||++--|.+...|++.
T Consensus 240 ~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 22232 3445555554 45565432 2334455555555443 23357899999999999998888765
Q ss_pred c
Q 005955 386 F 386 (667)
Q Consensus 386 f 386 (667)
+
T Consensus 318 l 318 (389)
T KOG0677|consen 318 L 318 (389)
T ss_pred H
Confidence 5
No 73
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.30 E-value=0.011 Score=63.54 Aligned_cols=215 Identities=19% Similarity=0.185 Sum_probs=124.1
Q ss_pred HHHHHHHHHcCCcee----eeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeC-------CeEEEEEecCC
Q 005955 189 QATKDAGIIAGLNVA----RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN-------GVFEVLSTNGD 257 (667)
Q Consensus 189 ~~l~~Aa~~AGl~~~----~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~-------~~~~v~~~~~~ 257 (667)
....++|+..||+.- .-+-+.-|.+++.+... ..-|++=+|.+|+++..-.... .....+....-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC----CCeEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 456788899998632 22334444444443222 2336666788887777665321 12222223333
Q ss_pred CCCcchHHHHHHHHHHHHHHHH---------hcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC------
Q 005955 258 THLGGEDFDQRVMEYFIKLIKK---------KHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG------ 322 (667)
Q Consensus 258 ~~lGG~~id~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~------ 322 (667)
..-||..-.-.+.+|+.+...- +++.++ ......++..-+++.+...+.... .+.++.+..+
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aD 384 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLAD 384 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCC
Confidence 4458888888899998765311 111110 011233444444555544432221 1222222211
Q ss_pred -------cceEEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCC
Q 005955 323 -------IDFSEPLTRARFEELNNDLFRKT---MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN 392 (667)
Q Consensus 323 -------~~~~~~itr~~~e~l~~~~~~~i---~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~ 392 (667)
.++++.-+.+.+-.+....++-+ ...|.+++++.| -.|+.|+.+||..+.|.+.+.+.+.. +.++.
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~ 460 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVV 460 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEE
Confidence 12333445554445555555555 345666666655 45899999999999999999999999 67766
Q ss_pred CCCCchhHHHhHHHHhhhhhcCC
Q 005955 393 KGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 393 ~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
.+ ..++++++|+|+.|+.-.+.
T Consensus 461 i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 461 IP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred ee-cccchhhhHHHHHHHHHhcc
Confidence 55 66889999999999876654
No 74
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.27 E-value=0.0035 Score=65.93 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=83.1
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhcCCC-----CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeecchHHHHHHhhcc
Q 005955 146 VFSPEEISAMILTKMKETAEAFLGKKI-----KDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLD 219 (667)
Q Consensus 146 ~~~~~ev~~~~L~~l~~~a~~~~~~~~-----~~~viTVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AaAl~y~~~ 219 (667)
..+..++++++-+-+.-.....+..+. -.+|+.||-.|.....+.+.. .....||..+.++.|+.||.+..|+.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 356666666554433333344444333 368999999999777655544 56778999999999999999888875
Q ss_pred cCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 220 KKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 220 ~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
...|||+|+-+|.++.++- |.. ...+.-....||.|+++.|+-++.
T Consensus 276 ------s~CVVdiGAQkTsIaCVEd--Gvs-~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 276 ------SACVVDIGAQKTSIACVED--GVS-LPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred ------ceeEEEccCcceeEEEeec--Ccc-ccCceEEeccCCchHHHHHHHHHH
Confidence 2479999999999988873 221 111122246899999999886654
No 75
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.10 E-value=0.00066 Score=65.61 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
..++++-+++.+.-.++..++...- ....++.|+++||.+++|.+.+++.+.| +.+|....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 4455555666655555554444311 1234889999999999999999999999 777765544 89999999999864
No 76
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.07 E-value=0.11 Score=52.76 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHH----hHcCCCCCCCCCCchhHHHhHHHHhh
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK----DYFDGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~----~~f~~~~v~~~~~p~~avA~GAa~~a 409 (667)
.++++...+.+.+.+...+++...... .|+|+||..+.+.+.+.+. +..+..++.....|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 345555556666666666666443322 2999999999977777663 44445556677889999999999986
No 77
>PRK10854 exopolyphosphatase; Provisional
Probab=97.05 E-value=0.027 Score=62.74 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHh-hcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchH
Q 005955 187 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 264 (667)
....+.++-+..|+++ .+++..+-|.+.| |..... ..+..+|+|+|||+|.+++++-.... ... ...+|...
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~---S~~lG~vr 171 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVE---SRRMGCVS 171 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeE---EEecceee
Confidence 3445555666779986 5555555555444 443322 23468999999999999998743211 111 13688777
Q ss_pred HHHHH
Q 005955 265 FDQRV 269 (667)
Q Consensus 265 id~~l 269 (667)
+.+.+
T Consensus 172 l~e~f 176 (513)
T PRK10854 172 FAQLY 176 (513)
T ss_pred HHhhh
Confidence 65543
No 78
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.05 E-value=0.043 Score=55.38 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=38.9
Q ss_pred cCcceEEEecC-ccCcHHHHHHHHhHcC--CCCCCCCCCchhHHHhHHHH
Q 005955 361 NQIDEIVLVGG-STRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 361 ~~i~~ViLvGG-~sr~p~i~~~l~~~f~--~~~v~~~~~p~~avA~GAa~ 407 (667)
..+..|+++|| .+..|.+++.+...+. +.++..+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 44778999999 6778999999988762 35667788999999999986
No 79
>PRK04123 ribulokinase; Provisional
Probab=97.01 E-value=0.019 Score=64.91 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=55.5
Q ss_pred eHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCccCcceEEEecCc-cCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 330 TRARFEELNNDLFRKTMG---PVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~---~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
+|.++ ++.+++.+.- .+.+.|++.+ ..++.|.++||+ ++++.+.+++.+.| +.+|... .+.++.|+||
T Consensus 409 ~~~~l---~RAvlEgia~~~~~~~e~l~~~g---~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGa 480 (548)
T PRK04123 409 DAPDI---YRALIEATAFGTRAIMECFEDQG---VPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGA 480 (548)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcC---CCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHH
Confidence 45544 4445555443 3444444443 347889999999 99999999999999 7888554 4567889999
Q ss_pred HHhhhhhcC
Q 005955 406 AVQGGILSG 414 (667)
Q Consensus 406 a~~aa~~s~ 414 (667)
|+.|+.-.+
T Consensus 481 A~lA~~~~G 489 (548)
T PRK04123 481 AIFAAVAAG 489 (548)
T ss_pred HHHHHHHhc
Confidence 999986554
No 80
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.95 E-value=0.028 Score=63.25 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=57.7
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCc-cCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
-+|.++...+-+-+.-....+.+.|++.+ ..++.|.++||+ ++++.+.+++.+.| +.+|....+ .++.|+|||+
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHH
Confidence 35555444433333333344445555444 347899999999 99999999999999 788866555 4688999999
Q ss_pred hhhhhcCC
Q 005955 408 QGGILSGE 415 (667)
Q Consensus 408 ~aa~~s~~ 415 (667)
.|+...+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876553
No 81
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.93 E-value=0.043 Score=60.94 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
..+++.+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.| +.++... ...++.++|||+.|+...
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 34444555554444444333321 11134789999999999999999999999 7887655 466799999999998765
Q ss_pred CC
Q 005955 414 GE 415 (667)
Q Consensus 414 ~~ 415 (667)
+.
T Consensus 440 g~ 441 (481)
T TIGR01312 440 GE 441 (481)
T ss_pred CC
Confidence 53
No 82
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.67 E-value=0.083 Score=58.56 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHh-hcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchH
Q 005955 187 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 264 (667)
....+.++-+..|+++ ++++..+-|.+.| +..... ..+..+|+|+|||+|.+++++-.. +. ...+..+|...
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~--~~---~~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQ--AT---SLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCc--ee---eeeEEeccchH
Confidence 4455666667789986 5555555554444 443322 234589999999999999986322 21 12245788877
Q ss_pred HHHHH
Q 005955 265 FDQRV 269 (667)
Q Consensus 265 id~~l 269 (667)
+.+.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 65554
No 83
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.67 E-value=0.0042 Score=69.88 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=64.5
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
.-+|..+..+++.+++.+.-.++..++...-....++.|.++||+++++.+.+++.+.+ +.+|.+..+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44676677777777777766655555543211234788999999999999999999999 888876644 5688999999
Q ss_pred hhhhhcCC
Q 005955 408 QGGILSGE 415 (667)
Q Consensus 408 ~aa~~s~~ 415 (667)
.|+.-.+.
T Consensus 487 lA~~~~G~ 494 (541)
T TIGR01315 487 LGAKAAGT 494 (541)
T ss_pred HHHHhcCc
Confidence 99865543
No 84
>PLN02669 xylulokinase
Probab=96.58 E-value=0.0062 Score=68.49 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 337 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+++.+.| +.+|.+... .++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCC-CCchHHHHHHHHHH
Confidence 45566666655555555554432 45789999999999999999999999 778766544 47889999999975
No 85
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.21 E-value=0.12 Score=51.67 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=53.7
Q ss_pred CcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchHHHHHHhh---cccCC----CceEEEEEEcCCceeEEEEEEE
Q 005955 173 KDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 173 ~~~viTVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~---~~~~~----~~~~vlVvD~GggT~dvsv~~~ 244 (667)
..+++|=|.+--+. |.....-..+.-+++-+ ..-+.|+..++- .+..+ ...+.+|+|-|.+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 47899999554333 33333334455566543 333333333332 22211 3458999999999887664432
Q ss_pred eCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 245 DNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 245 ~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
..... .+.. ...+||..++..|.+++.
T Consensus 172 g~~~~--qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GIPYY--QAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred Ccchh--hceE-EeecchHHHHHHHHHHhh
Confidence 21111 1111 246899999998887764
No 86
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.00 E-value=0.021 Score=54.64 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHH
Q 005955 186 AQRQATKDAGIIAGLNVARIINEPTAAAIA 215 (667)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~ 215 (667)
...+.+.++.+.+|+++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 456778889999999999999999998753
No 87
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.91 E-value=0.029 Score=61.75 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=57.5
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 329 LTRARFEELNNDLFRKTMGPVKKAMEDA-GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
-+|.++...+-+-+.-....+.+.|++. +. .++.|.++||+++++++.+++.+.+ +++|... +.++.|+|||+
T Consensus 356 ~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~ 429 (454)
T TIGR02627 356 ESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIG 429 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHH
Confidence 3666655444443333344455555543 32 4788999999999999999999999 8888543 36799999999
Q ss_pred hhhhhcCC
Q 005955 408 QGGILSGE 415 (667)
Q Consensus 408 ~aa~~s~~ 415 (667)
.|+.-.+.
T Consensus 430 ~a~~~~G~ 437 (454)
T TIGR02627 430 VQLMALDE 437 (454)
T ss_pred HHHHhcCC
Confidence 99876554
No 88
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.17 Score=55.47 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCC-ceEEEEEEcCCceeEEEEEEE
Q 005955 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGG-EKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~-~~~vlVvD~GggT~dvsv~~~ 244 (667)
.-+.+..+-+..|+++--+--|-+|--.++|.-..-. ....+|+|+|||+|.+++..-
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 3456677778889986555555556555555544332 667899999999999999873
No 89
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.79 E-value=0.036 Score=61.22 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=55.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHh
Q 005955 330 TRARFEELNNDLFRKTMGPVKKAMEDA-GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~ 408 (667)
+|.++-..+-+-+.--...+.+.|++. + ..++.|.++||+++++.+.+++.+.+ +.+|.... .++.++|||+.
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g---~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~ 418 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRG---EPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGI 418 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHH
Confidence 455554443333333334444555543 3 24788999999999999999999999 78885532 37999999999
Q ss_pred hhhhcCC
Q 005955 409 GGILSGE 415 (667)
Q Consensus 409 aa~~s~~ 415 (667)
|+.-.+.
T Consensus 419 a~~a~G~ 425 (471)
T PRK10640 419 QLMTLDE 425 (471)
T ss_pred HHHHcCC
Confidence 9876554
No 90
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.69 E-value=0.034 Score=62.29 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=54.9
Q ss_pred eHHHHHHHHHHHHHHHH---HHHHHHHHHc-CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 330 TRARFEELNNDLFRKTM---GPVKKAMEDA-GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~---~~i~~~l~~~-~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
+|.++- +.+++.+. ..+.+.+++. +. .++.|.++||+++++.+.+++.+.+ +++|....+ .++.++||
T Consensus 379 ~~~~~~---RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGa 450 (520)
T PRK10939 379 NKATLF---RALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGC 450 (520)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHH
Confidence 454444 44444443 3344444442 33 4788999999999999999999999 888866554 56889999
Q ss_pred HHhhhhhcC
Q 005955 406 AVQGGILSG 414 (667)
Q Consensus 406 a~~aa~~s~ 414 (667)
|+.|+.-.+
T Consensus 451 A~lA~~~~G 459 (520)
T PRK10939 451 AIAAGVGAG 459 (520)
T ss_pred HHHHHHHhC
Confidence 999986554
No 91
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.042 Score=59.53 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCc-cCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
.+.+....++.+.-.++..|+...... ..++.+.+.||.|+.|.+.+.+++.+ +.++.++.+++. ++.|||+.|+..
T Consensus 385 ~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a 462 (516)
T KOG2517|consen 385 KEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAA 462 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhh
Confidence 344444555555544444444432222 56888999999999999999999999 789988888776 999999999887
Q ss_pred cCC
Q 005955 413 SGE 415 (667)
Q Consensus 413 s~~ 415 (667)
++.
T Consensus 463 ~~~ 465 (516)
T KOG2517|consen 463 SGK 465 (516)
T ss_pred cCC
Confidence 765
No 92
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.56 E-value=0.2 Score=53.59 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=52.0
Q ss_pred cceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHH-hHcCCCCCCCCCCchhHH
Q 005955 323 IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK-DYFDGKEPNKGVNPDEAV 401 (667)
Q Consensus 323 ~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~-~~f~~~~v~~~~~p~~av 401 (667)
..-.+.||..++.++. -.-..+..-++-.|++++++..+++.|+|.||+++.=-..+.+. -.+|.....+..-...+.
T Consensus 289 ~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 3456788999998763 33344566788889999999999999999999999777777665 233433222211223377
Q ss_pred HhHHHHhh
Q 005955 402 AYGAAVQG 409 (667)
Q Consensus 402 A~GAa~~a 409 (667)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77887654
No 93
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.055 Score=56.68 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=47.7
Q ss_pred HHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+..+........|+++||+|+...|-+.|.+.| +.+|..- +..+++|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 344667778899999999999999999999999 7887654 7778999999999864
No 94
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.10 E-value=0.28 Score=50.64 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHh-hcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHH
Q 005955 189 QATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (667)
Q Consensus 189 ~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 267 (667)
..+...-...|+++ ++++..+-|.+.| +..........+++|+|||+|.++.+.-.+.. .....++|...+.+
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e 162 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRLTE 162 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEhHH
Confidence 34444455679885 5777766666655 33222122235999999999999987632211 12234566666554
Q ss_pred H
Q 005955 268 R 268 (667)
Q Consensus 268 ~ 268 (667)
.
T Consensus 163 ~ 163 (300)
T TIGR03706 163 Q 163 (300)
T ss_pred h
Confidence 4
No 95
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.06 E-value=0.057 Score=47.44 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEEEEcCCceeEEEEEEEe-CCeEEEEEecCCCC--CcchHHH--HHHHHH
Q 005955 227 ILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTH--LGGEDFD--QRVMEY 272 (667)
Q Consensus 227 vlVvD~GggT~dvsv~~~~-~~~~~v~~~~~~~~--lGG~~id--~~l~~~ 272 (667)
++++|+|++++.+++++.. .+.+.++....... +=+..+. +.+.+-
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~ 51 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKA 51 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHH
Confidence 5799999999999999973 33445544332111 1156665 555444
No 96
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.65 E-value=0.31 Score=52.30 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=72.0
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCce
Q 005955 147 FSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEK 225 (667)
Q Consensus 147 ~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~ 225 (667)
++--++...+|.|+..+....-..-...+++|-+..-....|+.|.+. .+.-|++.+.+=-+..=+... ........
T Consensus 91 vtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--N~~~~~~~ 168 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--NYGKSSNK 168 (645)
T ss_pred cccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh--ccCcccCc
Confidence 444567777777776654221111234578888877667788888775 566788877653332222221 11111233
Q ss_pred EEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
.-+|+++|..+|-|-.+--+... +....-.++||.....-|.+++.
T Consensus 169 ~~liis~g~~~T~vipvldG~~i---l~~~kRiN~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVLDGRLI---LKDVKRINWGGYQAGDYLSRLMQ 214 (645)
T ss_pred ceEEEecCCCcceeEEEecCchh---hhcceeeccCcchHHHHHHHHHh
Confidence 67999999999988776533222 22233467999887655555533
No 97
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.96 E-value=0.15 Score=52.33 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=27.9
Q ss_pred CceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 200 LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 200 l~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
.++..+.+-|.|.+..... ......+++++|+||.|||++++.
T Consensus 53 ~Pv~ti~SGPaas~~ga~~-~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAA-RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH---HT-SSEEEEEE-SS-EEEEEEE
T ss_pred hHHHHhhcCHHHhHhhhhh-hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 3556677888887776655 222356799999999999999997
No 98
>PF13941 MutL: MutL protein
Probab=93.95 E-value=1.1 Score=48.49 Aligned_cols=42 Identities=31% Similarity=0.598 Sum_probs=30.8
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEecCCCCcccceEEEecCCceeecH
Q 005955 38 VIGIDLGTTYSCVGVYK--NGHVEIIANDQGNRITPSWVAFTDSERLIGE 85 (667)
Q Consensus 38 viGID~GTt~s~va~~~--~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~ 85 (667)
++.+|||+|+|++..++ .+..+++ |....||.| .++....|.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EPGDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--CcccHHHHH
Confidence 68999999999999998 7777777 444668877 223445553
No 99
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.94 E-value=0.4 Score=48.30 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=48.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---ecchHHHHHHhhcccC--CCceEEEEEEcCCceeEEEEEEEeCCe
Q 005955 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKK--GGEKNILVFDLGGGTFDVSILTIDNGV 248 (667)
Q Consensus 174 ~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AaAl~y~~~~~--~~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (667)
-++||=-..-...+|..+......||==++.- -.|+.-|.-..+...- .....++=+|+||||+..+++...+-
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv- 167 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKV- 167 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccccc-
Confidence 35666666556666766665555555222211 1233333332222211 13567889999999999999875432
Q ss_pred EEEEEecCCCCCcchHH
Q 005955 249 FEVLSTNGDTHLGGEDF 265 (667)
Q Consensus 249 ~~v~~~~~~~~lGG~~i 265 (667)
..+ ....+||+-+
T Consensus 168 ---~dT-aCLdiGGRLi 180 (473)
T COG4819 168 ---SDT-ACLDIGGRLI 180 (473)
T ss_pred ---ccc-eeeecCcEEE
Confidence 122 2356788755
No 100
>PRK09604 UGMP family protein; Validated
Probab=93.79 E-value=8.6 Score=40.29 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=35.8
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCC---CchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~GAa~~aa 410 (667)
.++.|+|+||.+...++++.|.+.+. +.++..+. -.|.+++.|++=+-.
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999998873 23333322 237888888884443
No 101
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=92.41 E-value=0.4 Score=51.20 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-ccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
+.+++..++.+.-...++++...-. +..++.+-+=||.+++.++.+...+.+ +.+|.++.+ .|+.|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhh
Confidence 4555666666655555555443111 125888999999999999999999999 888887654 6799999999998766
Q ss_pred C
Q 005955 414 G 414 (667)
Q Consensus 414 ~ 414 (667)
+
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
No 102
>PRK09698 D-allose kinase; Provisional
Probab=92.14 E-value=16 Score=37.63 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=25.3
Q ss_pred HcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCc
Q 005955 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGG 235 (667)
Q Consensus 197 ~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~Ggg 235 (667)
..|++ +.+.|+..|+|++-.........+++++.+|.|
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 35775 678999999887643322223457888888865
No 103
>PRK09557 fructokinase; Reviewed
Probab=92.12 E-value=16 Score=37.62 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=30.2
Q ss_pred cCcceEEEecCccCcHHHHHHHHhHcCC--------CCCCCCCCchhHHHhHHHHhh
Q 005955 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p~i~~~l~~~f~~--------~~v~~~~~p~~avA~GAa~~a 409 (667)
-+++.|+|.||.++.+.+...+++.+.. .++....-.+.+.++||++..
T Consensus 243 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 3467888888888777665555554411 112223334668899998754
No 104
>PRK14878 UGMP family protein; Provisional
Probab=91.97 E-value=12 Score=39.03 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=22.1
Q ss_pred cceEEEecCccCcHHHHHHHHhHc
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
+..|+|+||.+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 668999999999999999999876
No 105
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.25 E-value=2.5 Score=41.34 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCC
Q 005955 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (667)
Q Consensus 156 ~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~Gg 234 (667)
=..+|++.+++..+.++ .++++-..|... .....++.|. |+ ..|...+.... .++..+++|+|+
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aN----------W~Ata~~~~e~--~~dsci~VD~GS 139 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-AN----------WVATARFLAEE--IKDSCILVDMGS 139 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hh----------hHHHHHHHHHh--cCCceEEEecCC
Confidence 34567777777666554 788888777653 2222222211 11 11111111111 255689999999
Q ss_pred ceeEEEEEEE
Q 005955 235 GTFDVSILTI 244 (667)
Q Consensus 235 gT~dvsv~~~ 244 (667)
.|+|+--+.-
T Consensus 140 TTtDIIPi~~ 149 (330)
T COG1548 140 TTTDIIPIKD 149 (330)
T ss_pred cccceEeecc
Confidence 9999987753
No 106
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=91.21 E-value=0.24 Score=53.16 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=42.2
Q ss_pred cceEEEecCccCcHHHHHHHHhHcC-------CCCCCCCCCchhHHHhHHHHhhhh
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f~-------~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
++.|+|+||+|.+|++...|...+- ...|....||...+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 7899999999999999999998772 234566779999999999999976
No 107
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.39 E-value=0.36 Score=49.51 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCceeeeecchHHHHHHh-hcccC-CCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHH
Q 005955 190 ATKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (667)
Q Consensus 190 ~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~-~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 267 (667)
.+.+.-+..|+++ .+++..+-|.+.| +.... ......+++|+|||+|.++.++- +.+.. ....++|...+.+
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~lG~vrl~e 149 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKVVF---SQSLPLGAVRLTE 149 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEEEE---EEEES--HHHHHH
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--CeeeE---eeeeehHHHHHHH
Confidence 4445556679885 4555554444443 33222 24567899999999999998863 32211 2235688877655
Q ss_pred HH
Q 005955 268 RV 269 (667)
Q Consensus 268 ~l 269 (667)
.+
T Consensus 150 ~~ 151 (285)
T PF02541_consen 150 RF 151 (285)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 108
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.04 E-value=4.3 Score=41.97 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCC---CCCCCCCCc----hhHHHhHHHHhhhhh
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG---KEPNKGVNP----DEAVAYGAAVQGGIL 412 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~---~~v~~~~~p----~~avA~GAa~~aa~~ 412 (667)
..++.+...|...+.. ..+++.|+|+|-.+++|-+.+.+++.|.. .++. .+.+ ....|.|||+.|.-+
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhh
Confidence 3344444444443332 24578899999999999998888877732 1221 1222 245899999999777
Q ss_pred cCC
Q 005955 413 SGE 415 (667)
Q Consensus 413 s~~ 415 (667)
.+.
T Consensus 317 aGG 319 (343)
T PF07318_consen 317 AGG 319 (343)
T ss_pred hcc
Confidence 654
No 109
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=89.75 E-value=29 Score=36.42 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCCcEEEEe-CCCCCHHHHH--HHHHHHHHcCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEEEEeC
Q 005955 171 KIKDAVVTV-PAYFNDAQRQ--ATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDN 246 (667)
Q Consensus 171 ~~~~~viTV-Pa~~~~~qr~--~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~~~~~ 246 (667)
.++.+.+|. |..|+.--.- .-+..|...|.+.+. ++--+|-++.-.+... ..+ +++=+=||+|.+.. ...
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Plig-V~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~~~ 143 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVG-VNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--YSE 143 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEee-cchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--ecC
Confidence 456677776 7666633222 223344455655433 4444444333222221 123 66667788888776 345
Q ss_pred CeEEEEEecCCCCCcchHHHHH
Q 005955 247 GVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 247 ~~~~v~~~~~~~~lGG~~id~~ 268 (667)
+.+++++..-|... |+.||+.
T Consensus 144 ~~~~ilG~T~Dda~-Gea~DKv 164 (345)
T PTZ00340 144 HRYRIFGETIDIAV-GNCLDRF 164 (345)
T ss_pred CeEEEEEeecccch-hHHHHHH
Confidence 67888887765443 5666653
No 110
>PTZ00297 pantothenate kinase; Provisional
Probab=89.63 E-value=12 Score=46.93 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=37.7
Q ss_pred cCcceEEEecCc-cCcHHHHHHHHhHc-----CCCCCCCCCCchhHHHhHHHHhh
Q 005955 361 NQIDEIVLVGGS-TRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 361 ~~i~~ViLvGG~-sr~p~i~~~l~~~f-----~~~~v~~~~~p~~avA~GAa~~a 409 (667)
.+++.|+++|++ ...|..++.|...+ ++.+.....+....-|.||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 568899999994 56899988887655 34455556678899999999864
No 111
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.63 E-value=3.1 Score=43.82 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC----CCCchhHHHhHHHHhhhh
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~----~~~p~~avA~GAa~~aa~ 411 (667)
+++.-+.+-+...|.+.++... ...+.|+++||+++.|+|.++|++.+| .++.. ..+++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444444445555666665432 224689999999999999999999996 44432 245565555566666654
No 112
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=89.60 E-value=28 Score=36.12 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=32.6
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCC---CchhHHHhHHH
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAA 406 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~GAa 406 (667)
.++.|+|.||.+...++++.|.+.+. +.++..+. --|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 46789999999999999999998872 22332222 23778888876
No 113
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.41 E-value=1.5 Score=46.27 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC----CCCchhHHHhHHHHhh
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQG 409 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~----~~~p~~avA~GAa~~a 409 (667)
-+++..-+.+-+...|.+.++... ..++.|+++||+.+.|.+.+.|++.+++.+|.. .++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 345555566666666667776643 237899999999999999999999997655532 3445444445555666
Q ss_pred hh
Q 005955 410 GI 411 (667)
Q Consensus 410 a~ 411 (667)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 114
>PLN02666 5-oxoprolinase
Probab=87.69 E-value=9.4 Score=47.11 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=47.6
Q ss_pred eHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCC-CCCCCCchhHHHhHHHH
Q 005955 330 TRARFEELNNDLF-RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE-PNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 330 tr~~~e~l~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~-v~~~~~p~~avA~GAa~ 407 (667)
+-++...-+..+. ....+.|+......|+++.+. .++..||+ =|...-.|.+.+ +.+ +..+.+|.-..|.|+++
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~l-gi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARAL-GMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHc-CCCEEEeCCCccHHHHHHHHh
Confidence 4444444333333 333455555555666665442 34445554 478888999999 555 77888999999999986
Q ss_pred hh
Q 005955 408 QG 409 (667)
Q Consensus 408 ~a 409 (667)
--
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 115
>PRK03011 butyrate kinase; Provisional
Probab=87.60 E-value=6.2 Score=41.72 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=36.4
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCC---CCCCCCCCchhHHHhHHHHh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG---KEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~---~~v~~~~~p~~avA~GAa~~ 408 (667)
+++.|+|.||.+..+.+.+.+++.+.. ..+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 589999999999999999999887732 23444555668999998754
No 116
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=86.80 E-value=19 Score=38.13 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=53.9
Q ss_pred EeeHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCccCcce-EEEecCccCcHHHHHHHHhHcCCCCCCCCCC-chhHHHhH
Q 005955 328 PLTRARFEELNNDLFRKTM-GPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVN-PDEAVAYG 404 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~-p~~avA~G 404 (667)
.-.+.++-..++..+++++ ..++.++++.+ ++. |.|.||....-..-..|.+..+-.++..++- .|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 3466677777777777664 55566666655 455 9999999998888888888742234444433 48899999
Q ss_pred HHHhhhhhc
Q 005955 405 AAVQGGILS 413 (667)
Q Consensus 405 Aa~~aa~~s 413 (667)
||+++....
T Consensus 207 aA~~~~~~~ 215 (360)
T PF02543_consen 207 AALYAWHEL 215 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999997543
No 117
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=86.08 E-value=8.1 Score=40.19 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=43.0
Q ss_pred CccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC----CCCchhHHHhHHHHhhhhh
Q 005955 359 EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 359 ~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~----~~~p~~avA~GAa~~aa~~ 412 (667)
.....+.++++||+.+.|++++.|...+++..|.. .++++..-|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 44667899999999999999999999997766642 5577777777777777654
No 118
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=85.83 E-value=16 Score=42.18 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCc--HHHHH-HHHhHcCC----------CCCCCCCCchhHHHh
Q 005955 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI--PKVQQ-LLKDYFDG----------KEPNKGVNPDEAVAY 403 (667)
Q Consensus 337 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~--p~i~~-~l~~~f~~----------~~v~~~~~p~~avA~ 403 (667)
++...++.+...+-..+...-..-..++.|+|.||-+.- +++.+ .+.+.|.. .++... --+.+.-.
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i-~~~~~~l~ 322 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLI-TAEYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEE-eCCChhHH
Confidence 344555555555555554432222336789999998743 55553 56666622 222222 22446667
Q ss_pred HHHHhhh
Q 005955 404 GAAVQGG 410 (667)
Q Consensus 404 GAa~~aa 410 (667)
||+.++.
T Consensus 323 Gaa~~~~ 329 (638)
T PRK14101 323 GVSAILA 329 (638)
T ss_pred HHHHHHH
Confidence 8865553
No 119
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=85.20 E-value=50 Score=34.17 Aligned_cols=92 Identities=22% Similarity=0.343 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--hcCCCCcEEEEeCCCCCHHH------------HHHHHHH-HHHcCCceeeeecchHHHH
Q 005955 149 PEEISAMILTKMKETAEAF--LGKKIKDAVVTVPAYFNDAQ------------RQATKDA-GIIAGLNVARIINEPTAAA 213 (667)
Q Consensus 149 ~~ev~~~~L~~l~~~a~~~--~~~~~~~~viTVPa~~~~~q------------r~~l~~A-a~~AGl~~~~li~Ep~AaA 213 (667)
+++++..+.+.+.+..... ...++..+.|++|...+... ...+.+. .+..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4454444444444433321 11245566777776443210 1112222 2345775 66899999998
Q ss_pred HHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 214 IAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 214 l~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
++-..... ...++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 86543322 234678888888775 44444
No 120
>PLN02920 pantothenate kinase 1
Probab=84.28 E-value=5.3 Score=42.11 Aligned_cols=50 Identities=12% Similarity=-0.124 Sum_probs=37.7
Q ss_pred cCcceEEEecCccCcH-HHHHHHHhHc-----CCCCCCCCCCchhHHHhHHHHhhh
Q 005955 361 NQIDEIVLVGGSTRIP-KVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p-~i~~~l~~~f-----~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
..++.|+++|.+.|.+ ..++.|.-.+ ++.+.....+.....|.||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 5588999999999998 6776554332 345566677889999999987653
No 121
>PTZ00107 hexokinase; Provisional
Probab=83.47 E-value=76 Score=34.88 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEEE
Q 005955 180 PAYFNDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 180 Pa~~~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~~ 243 (667)
|..-...-.+.+.+|...-|++ ++.++|+.+|..++..+... ..+...+-+=+|.||=-+.+..
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~ 255 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFEP 255 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeeeh
Confidence 5455566778888898888874 57789999998877666542 1234555555677766555543
No 122
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=82.16 E-value=5.7 Score=41.79 Aligned_cols=159 Identities=23% Similarity=0.301 Sum_probs=80.2
Q ss_pred ccCCcEEEEEcCccceEEEEEE--CC---eEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhC
Q 005955 33 TKLGTVIGIDLGTTYSCVGVYK--NG---HVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (667)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~--~g---~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (667)
.++.+++-||=|+|.|.|-+|. ++ .+-.+..+.=....|-.-+|. .+|......+..||.
T Consensus 64 ~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfa---------------ddp~~aA~Sl~~LLd 128 (453)
T KOG1385|consen 64 IKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFA---------------DDPEEAANSLRPLLD 128 (453)
T ss_pred CceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccC---------------CChHHHHHhHHHHHH
Confidence 4456899999999999998884 22 111111110111223333333 344444555566664
Q ss_pred CCCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHH
Q 005955 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (667)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~q 187 (667)
... ...|..... ...+.+.-..| ....|.+-+..+|+.++++.++...-.+..-.++|=
T Consensus 129 ~A~---------~~vP~~~~~---kTPi~lkATAG--LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm------- 187 (453)
T KOG1385|consen 129 VAE---------AFVPREHWK---KTPIVLKATAG--LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIM------- 187 (453)
T ss_pred HHH---------hhCCHhHhc---cCceEEEeecc--cccCChhHHHHHHHHHHHHHhccCCccccCCceeec-------
Confidence 321 111111100 01122221134 556788999999999999887433222211112211
Q ss_pred HHHHHHHHHHcCCceeeeecchHHH--HHHhhcccCC--CceEEEEEEcCCceeEEEEEE
Q 005955 188 RQATKDAGIIAGLNVARIINEPTAA--AIAYGLDKKG--GEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~Ep~Aa--Al~y~~~~~~--~~~~vlVvD~GggT~dvsv~~ 243 (667)
.-.+|..-| .+.|....-. ....+.|+|+|||+|.++..-
T Consensus 188 ----------------~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 188 ----------------DGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ----------------cCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 111222222 2334333322 256799999999999998765
No 123
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=81.85 E-value=7.4 Score=39.39 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=39.9
Q ss_pred cceEEEecC--ccCcH-HHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 363 IDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 363 i~~ViLvGG--~sr~p-~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
...|+|.|- +++.| .+++.|++.| ..++.. +.. +..|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 347999987 99999 9999999999 555533 333 89999999999877654
No 124
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=81.22 E-value=67 Score=32.74 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCc-HHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~-p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
.++++....|...++... -......+.+.||..+. |++.....+.... +|..-+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHh
Confidence 455555566666665542 12345679999999877 8888888877722 23557788998888543
No 125
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=79.32 E-value=1.1e+02 Score=34.26 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=36.9
Q ss_pred cceEEEecCccCcHHHHHHHHhHc--CCCCCCCCC---CchhHHHhHHHHhhhhhc
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYF--DGKEPNKGV---NPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f--~~~~v~~~~---~p~~avA~GAa~~aa~~s 413 (667)
++.|+|+||.+...++++.|.+.+ .+.++..+. ..|.+++.|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 568999999999999999999665 233443332 347889998887654443
No 126
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=78.48 E-value=40 Score=34.80 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 346 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 346 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
.+.++++++.. .++.|+|+||.+...++++.+.+.+
T Consensus 247 ~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 34445555442 3678999999999999999998887
No 127
>PLN02914 hexokinase
Probab=78.44 E-value=1.1e+02 Score=33.72 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 184 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
...-.+.+.+|.+.-|+ +++.++|+.+|..++..+.. +...+-+=+|.||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~---~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC---CCceEEEEEECCeeeEEEeec
Confidence 34445556666655554 56778999999877665543 235555667777776666554
No 128
>PRK00976 hypothetical protein; Provisional
Probab=78.12 E-value=16 Score=37.80 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=38.6
Q ss_pred CcceEEEecCccCcH--HHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 362 QIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p--~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
+++.|+|.||-++.+ .+.+.+++.+ ...+ ..-...+.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~~--a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELL-DKKV--LVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHh-cccc--cccCCchHHHHHHHHHHHHhCC
Confidence 478899999999998 7888888887 3222 2223589999999998766443
No 129
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=77.80 E-value=2.1 Score=42.72 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.4
Q ss_pred cEEEEEcCccceEEEEEECC
Q 005955 37 TVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g 56 (667)
+++|||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 47999999999999999733
No 130
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=77.34 E-value=96 Score=32.28 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 331 RARFEELNNDL----FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 331 r~~~e~l~~~~----~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
.++.+++|..+ ++-+++..+++++..+ .+.++++||-+....+|+++++.+
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 44455555544 4444555666666644 567999999999999999999877
No 131
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.49 E-value=3.1 Score=47.57 Aligned_cols=41 Identities=29% Similarity=0.538 Sum_probs=30.4
Q ss_pred eeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEEE
Q 005955 202 VARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 202 ~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~~ 243 (667)
+..+.+-|.|..++...... ..+ +++++|+||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 34567888887776655422 222 699999999999999987
No 132
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.33 E-value=50 Score=28.88 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCC
Q 005955 594 KLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR-SGGAPGAG 654 (667)
Q Consensus 594 ~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~-~~~~~~~~ 654 (667)
.+-..+++++...+++-.+.++. ....++.+...|+.-+......+++. ++|++|+|
T Consensus 63 vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 63 LLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred HHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34445777777777777777775 47788888888888888888888887 55556665
No 133
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=76.16 E-value=2.4 Score=35.34 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.8
Q ss_pred cEEEEEcCccceEEEEEEC
Q 005955 37 TVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (667)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4799999999999999853
No 134
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=74.20 E-value=6.9 Score=45.35 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=37.5
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcC--CCCCCCC---CCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG---VNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~---~~p~~avA~GAa~~aa 410 (667)
.++.|+|+||.++..++++.+.+.+. +.++..+ .-.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998873 2333322 2338899999988874
No 135
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=73.92 E-value=25 Score=37.54 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=21.1
Q ss_pred cCCcEEEEEcCccceEEEEEE---CCeEEE
Q 005955 34 KLGTVIGIDLGTTYSCVGVYK---NGHVEI 60 (667)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~---~g~~~i 60 (667)
+.+.+++||||.||.++|.+. +|.+++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 446899999999999999885 444544
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=72.01 E-value=4.1 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (667)
|.++|||+|+..+.+|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 468999999999999999865
No 137
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=69.93 E-value=3.8 Score=45.93 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=18.9
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (667)
|..++|||+|||++++++++..
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred CcEEEEEecCCCceEEEEECCC
Confidence 3579999999999999999643
No 138
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=68.86 E-value=42 Score=33.36 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=42.9
Q ss_pred cCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEE
Q 005955 169 GKKIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 169 ~~~~~~~vi--TVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~ 242 (667)
+..+..++. .+|.+|+.- +++++.+...|.+. .+++--.||.+....+..- ....++++|+|-|.|-..++
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEE
Confidence 444556776 788876632 23444444445554 3444445554444333321 35679999999999988888
No 139
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=68.16 E-value=43 Score=34.60 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.7
Q ss_pred ccCCcEEEEEcCccceEEEEEEC
Q 005955 33 TKLGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~ 55 (667)
+.++.++|||+|.|++++++.+.
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC
Confidence 34578999999999999999864
No 140
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=66.70 E-value=9.7 Score=33.22 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEECCe
Q 005955 38 VIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (667)
+++||+|++.+++++++.+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998764
No 141
>PF13941 MutL: MutL protein
Probab=66.53 E-value=51 Score=36.00 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.5
Q ss_pred EEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcc-hHHHHHHHHH
Q 005955 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG-EDFDQRVMEY 272 (667)
Q Consensus 227 vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG-~~id~~l~~~ 272 (667)
+|++|||+.+|-++++....+..++++......--. .|+...+.+-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A 48 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNA 48 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHH
Confidence 799999999999999996666666665443222222 2555555443
No 142
>PLN02362 hexokinase
Probab=66.49 E-value=34 Score=37.97 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 186 AQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 186 ~qr~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
.-.+.+.+|...-|+ +++.++|+.++..++..+.. +.+.+-+=+|.||=-+.+-+
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~---~~~~iG~IlGTGtNacY~E~ 262 (509)
T PLN02362 206 DVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD---PDTVAAVIIGTGTNACYLER 262 (509)
T ss_pred hHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC---CCceEEEEEECCccceEeee
Confidence 344555555555554 56778999999877655443 33555556677766555443
No 143
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=64.39 E-value=6.9 Score=35.15 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.0
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (667)
++.++|||+|+..+.+|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 3569999999999999998754
No 144
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=64.17 E-value=24 Score=26.50 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=27.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005955 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (667)
Q Consensus 174 ~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~ 203 (667)
...++.|+.++..+|..+.+.|...||...
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 677899999999999999999999998753
No 145
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.95 E-value=28 Score=34.46 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=41.4
Q ss_pred eeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 203 ~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
..+++.-.||+.....+.. ....+|+|+|-|.+..+++. .+.+.-+-......+.-..+...|.+++
T Consensus 207 av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~ 273 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFV 273 (342)
T ss_pred EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHH
Confidence 3456666666666655554 34789999999999998876 3344444334445555555544444443
No 146
>PRK04123 ribulokinase; Provisional
Probab=63.40 E-value=6.7 Score=44.31 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.5
Q ss_pred CcEEEEEcCccceEEEEEE
Q 005955 36 GTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (667)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 3689999999999999998
No 147
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=61.50 E-value=2.7e+02 Score=31.04 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=53.8
Q ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHH-HHHHhHcCCCCCCCCCC-chhHHHhHHH
Q 005955 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ-QLLKDYFDGKEPNKGVN-PDEAVAYGAA 406 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~-~~l~~~f~~~~v~~~~~-p~~avA~GAa 406 (667)
....++...++..+++++..+..-+.+.. ..+.+.+.||....-.+. +.+.+.+ ...+...+. .|.-.|.|||
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHH
Confidence 34556666677777777766666665531 156799999998876666 5565555 445544443 3778999999
Q ss_pred Hhhhhhc
Q 005955 407 VQGGILS 413 (667)
Q Consensus 407 ~~aa~~s 413 (667)
++++...
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9987544
No 148
>PLN02405 hexokinase
Probab=61.37 E-value=62 Score=35.83 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 184 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
...-.+.+.+|...-|+ +++.++|+.++..++..+.. +.+.+-+=+|.||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~---~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN---PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC---CCceEEEEEeCCeeeEEEeec
Confidence 34445566666666666 45778999999877665543 345566667888776665544
No 149
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=61.31 E-value=7.7 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=17.0
Q ss_pred cEEEEEcCccceEEEEEE
Q 005955 37 TVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~ 54 (667)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 150
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=60.62 E-value=8.5 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.6
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (667)
+.++|||+||-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 578999999999999998655
No 151
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=56.28 E-value=59 Score=35.05 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
++++-+-+++.+-..+.+.+.++++.+.+|..+.++|-.+-.-++...=-+.+
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 45555667777888899999999999999999999997765555544333344
No 152
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=55.18 E-value=1.3e+02 Score=30.93 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=31.3
Q ss_pred cCcceEEEecCccCcHHHHHHHHhHcCC--------CCCCCCCCchhHHHhHHHHhh
Q 005955 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p~i~~~l~~~f~~--------~~v~~~~~p~~avA~GAa~~a 409 (667)
-+++.|+|-||.+..+.+.+.+++.+.. .++......+.+.++||+..+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 3467888888877766666666665521 112223344678999999876
No 153
>PRK13331 pantothenate kinase; Reviewed
Probab=54.22 E-value=16 Score=36.47 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=21.6
Q ss_pred cccCCcEEEEEcCccceEEEEEECCe
Q 005955 32 ATKLGTVIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 32 ~~~~~~viGID~GTt~s~va~~~~g~ 57 (667)
+...+.++.||+|+|+++++++++++
T Consensus 3 ~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 3 FHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 34456789999999999999998664
No 154
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=54.01 E-value=37 Score=34.08 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=37.6
Q ss_pred CCccCcceEEEecCccCcHHHHHHHHhHcC---CCCCCCCCCchhHHHhHHHH
Q 005955 358 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 358 ~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~---~~~v~~~~~p~~avA~GAa~ 407 (667)
.-+..+|.|+|+||.++...+-++|.++.. ..-+.-..+-.+|-|.||..
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345679999999999999999999988762 12233344667899999864
No 155
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=53.91 E-value=11 Score=42.56 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.4
Q ss_pred EEEEEcCccceEEEEEEC
Q 005955 38 VIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 38 viGID~GTt~s~va~~~~ 55 (667)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 799999999999999963
No 156
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=53.56 E-value=65 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=27.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~ 203 (667)
....++.|+.++..+|..+.+.|+..||...
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3567899999999999999999999999754
No 157
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=52.03 E-value=10 Score=39.20 Aligned_cols=31 Identities=23% Similarity=0.146 Sum_probs=22.0
Q ss_pred hHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 209 PTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 209 p~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
+.|+|...+.. -.+++++||||.|+|++++.
T Consensus 116 ~~a~A~~la~~----~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 116 WLATAQLIAKR----IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred HHHHHHHHHhc----CCCEEEEEcCccceeeEEec
Confidence 45534444332 23589999999999999986
No 158
>PLN02669 xylulokinase
Probab=51.31 E-value=13 Score=42.04 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=18.1
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 005955 36 GTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (667)
..++|||+||+.+++++++.
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~ 27 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDS 27 (556)
T ss_pred CeEEEEecccCCeEEEEEcC
Confidence 57999999999999999963
No 159
>PRK13320 pantothenate kinase; Reviewed
Probab=50.72 E-value=18 Score=35.98 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=19.8
Q ss_pred CCcEEEEEcCccceEEEEEECCe
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~ 57 (667)
|+.++.||+|+|+++.++++++.
T Consensus 1 ~~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 1 VSMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred CceEEEEEeCCCcEEEEEEECCE
Confidence 35689999999999999998664
No 160
>PLN02596 hexokinase-like
Probab=50.67 E-value=84 Score=34.73 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEe
Q 005955 186 AQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID 245 (667)
Q Consensus 186 ~qr~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~ 245 (667)
.-.+.+.+|...-|+ +++.++|+.++..++..+.. ++..+-+=+|.||=-+.+-+..
T Consensus 206 Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~---~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 206 ALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN---KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC---CCeEEEEEEecccceEEEEEcc
Confidence 334445566555555 56788999999877766553 2355555578887766666543
No 161
>PRK13318 pantothenate kinase; Reviewed
Probab=50.17 E-value=17 Score=36.48 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEECCe
Q 005955 38 VIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (667)
+++||+|.|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 162
>PRK13321 pantothenate kinase; Reviewed
Probab=50.03 E-value=17 Score=36.42 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECC
Q 005955 38 VIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g 56 (667)
+++||+|+|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999866
No 163
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=49.63 E-value=24 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEE--ECCeEEEEe
Q 005955 38 VIGIDLGTTYSCVGVY--KNGHVEIIA 62 (667)
Q Consensus 38 viGID~GTt~s~va~~--~~g~~~ii~ 62 (667)
|+|||.|++++..|+. .++.+.++.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEE
No 164
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=49.62 E-value=63 Score=32.32 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=34.4
Q ss_pred ccCcceEEEecCccCcHHH----HHHHHhHcCC----CCCC--CCCCchhHHHhHHHHhhhhhcCC
Q 005955 360 KNQIDEIVLVGGSTRIPKV----QQLLKDYFDG----KEPN--KGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 360 ~~~i~~ViLvGG~sr~p~i----~~~l~~~f~~----~~v~--~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
....+.|+|.|-++++|-+ ++.|++.|.. ..+. ...---.-.|.|||+.|..+++.
T Consensus 271 s~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 271 STYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred ccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 3457889999999998765 4555555521 1121 11122335678999888766654
No 165
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=49.37 E-value=3.2e+02 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=30.1
Q ss_pred cceEEEecCccCcHHHHHHHHhHcC--CCCCCCCC---CchhHHHhH
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYG 404 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~G 404 (667)
+..|+|+||.+...++++.|.+.+. +.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 6689999999999999999999652 33333222 226677777
No 166
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.31 E-value=40 Score=33.52 Aligned_cols=21 Identities=10% Similarity=0.328 Sum_probs=11.6
Q ss_pred hHHHHHHhhccHHHHHHHHHH
Q 005955 563 KVKEKIDARNSLETYVYNMKN 583 (667)
Q Consensus 563 ~~~~~~~a~n~LE~~i~~~~~ 583 (667)
..+.|.--..+|.+-+++||.
T Consensus 83 ~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 334444445556666677773
No 167
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=47.43 E-value=1.3e+02 Score=29.22 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCC--CCCCCCCchhHHHhHHHH
Q 005955 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK--EPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~--~v~~~~~p~~avA~GAa~ 407 (667)
++.-+++.-++++.-.+ -+.|++|||-+..-.+|++....+... ++. .-|-..++-.|+.+
T Consensus 238 vFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCchHH
Confidence 33333444455554433 357999999999999999999888322 222 22444566666654
No 168
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=46.63 E-value=17 Score=33.69 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.8
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 005955 35 LGTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~ 54 (667)
++.|+|||-|++++..|+.+
T Consensus 1 ~m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CCEEEEEccccCceeEEEEE
Confidence 36799999999999999875
No 169
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=46.49 E-value=71 Score=30.86 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.6
Q ss_pred CceEEEEEEcCCceeEEEEEEEeCC
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (667)
..+.+|++|+||.++-++.+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 4567999999999999999999876
No 170
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.24 E-value=47 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.732 Sum_probs=16.8
Q ss_pred HHHHHhcC-CCCCHHHHHHHHH
Q 005955 610 ALEWLDDN-QSAEKEDYEEKLK 630 (667)
Q Consensus 610 ~~~Wl~~~-~~~~~~~~~~kl~ 630 (667)
.++||+++ ...|.++|+++..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 47899987 5679999998764
No 171
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=46.08 E-value=57 Score=30.71 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 005955 576 TYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN--QSAEKEDYEEKLKEVEAVCNPIITA 642 (667)
Q Consensus 576 ~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~--~~~~~~~~~~kl~~l~~~~~~i~~r 642 (667)
+|+.+++..|.. ++++| ..+.++.++++++|. +..+.+++-++|-.=+++...+..-
T Consensus 5 efL~~L~~~L~~-------lp~~e---~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 5 EFLNELEKYLKK-------LPEEE---REEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHc-------CCHHH---HHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 455565555432 44444 445577777777765 2356777777777777777766643
No 172
>PRK13326 pantothenate kinase; Reviewed
Probab=45.36 E-value=23 Score=35.62 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred CcEEEEEcCccceEEEEEECCe
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~ 57 (667)
+.++.||+|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 5789999999999999998764
No 173
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=44.98 E-value=3.3e+02 Score=27.59 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC
Q 005955 567 KIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 617 (667)
Q Consensus 567 ~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~ 617 (667)
..-..-.||+.+.++|..-.--++++.|.+++|.-.+...|.++..-|...
T Consensus 73 ma~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqe 123 (324)
T PF12126_consen 73 MAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQE 123 (324)
T ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhh
Confidence 333455677777777754222235888999999999999999999998654
No 174
>PLN02902 pantothenate kinase
Probab=44.77 E-value=1e+02 Score=36.31 Aligned_cols=51 Identities=12% Similarity=-0.134 Sum_probs=34.0
Q ss_pred cCcceEEEecCccCc-HHHHHHHHhHc-----CCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 361 NQIDEIVLVGGSTRI-PKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~-p~i~~~l~~~f-----~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
..++.|+++|.+-|- |...+.|...+ +..+.....+-...-|+||.+....
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~~ 401 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEK 401 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCCc
Confidence 558899999998654 34445554433 2345555667788999999977643
No 175
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.38 E-value=46 Score=25.07 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005955 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (667)
Q Consensus 174 ~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~ 203 (667)
.-.++.|+.++..+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 556778999999999999999999999754
No 176
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=43.34 E-value=4.1e+02 Score=27.83 Aligned_cols=224 Identities=15% Similarity=0.128 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeeeecchHHHHHHhhcccCCCc
Q 005955 150 EEISAMILTKMKETAEAFLGKK---IKDAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGE 224 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~---~~~~viTVPa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AaAl~y~~~~~~~~ 224 (667)
.+.-..-+..+.+.+....+.. .+-+.+|+-....-.=+.-++.|-..|+- +.+--|+--+|-|+..-+......
T Consensus 79 ~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~ 158 (405)
T KOG2707|consen 79 QLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVR 158 (405)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcC
Confidence 4445556666677665554443 34467777656665555556666555542 122236667787777655554434
Q ss_pred eEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Q 005955 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 304 (667)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (667)
-.++.+=+-||.+-+++.+- -+.++.++..-|.. =|+.+|+.- +..|...... .....-+++|..-.
T Consensus 159 FPFl~lLvSGGH~llvla~~-~~~~~llg~TvDiA-pGe~lDK~a---------r~Lgl~~~~e--~~~~~g~aie~la~ 225 (405)
T KOG2707|consen 159 FPFLALLVSGGHTLLVLANG-VGDHELLGQTVDIA-PGEALDKCA---------RRLGLLGHPE--DARSGGKAIEHLAN 225 (405)
T ss_pred CceeeEeeeCCceEEEEecc-ccceeeeecccccc-hHHHHHHHH---------HHhcCCCCcc--chhhhhhHHHHHHh
Confidence 45677777777777766642 23455555444332 244554432 2223222111 00111111111111
Q ss_pred HhcC------------CcceEEeeecccCC---------cceEEEeeHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCccC
Q 005955 305 ALSS------------QHQVRVEIESLFDG---------IDFSEPLTRARFE-ELNNDLFRKTMGPVKKAMEDAGLEKNQ 362 (667)
Q Consensus 305 ~Ls~------------~~~~~i~i~~~~~~---------~~~~~~itr~~~e-~l~~~~~~~i~~~i~~~l~~~~~~~~~ 362 (667)
.-|. ...+.+++..+... ..-.....+.+|- ++-...+..+.+..+.+++...+.+..
T Consensus 226 ~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~ 305 (405)
T KOG2707|consen 226 RASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKN 305 (405)
T ss_pred ccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 1011 01111111110000 0000011223332 222334555666667777776666777
Q ss_pred cceEEEecCccCcHHHHHHHHhHc
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
+...++.||-++..+|+..|+...
T Consensus 306 ~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 306 VKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred CceEEEcCCccchHHHHHHHHHHH
Confidence 889999999999999999999876
No 177
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=43.22 E-value=76 Score=32.36 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=32.3
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCC------CCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~------~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|.|+.+..+.+.+.+++.+... ++......+.+.+.|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4678999888877776667777666321 122223346788999998763
No 178
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=42.59 E-value=83 Score=32.28 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHcCCceeeeecchHHHHHHhhccc-CCCceEEEEEEcCCce
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGT 236 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~~-~~~~~~vlVvD~GggT 236 (667)
+..|++ +.+.|+..|+|++-.... ....+.++++.+|.|-
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi 134 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV 134 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce
Confidence 345776 678999999888743322 1234678888888653
No 179
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=41.87 E-value=9.2 Score=41.23 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=40.6
Q ss_pred cCcceEEEecCccCcHHHHHHHHhHcCC-----CC---------CCCCCCchhHHHhHHHHhhhhhc
Q 005955 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDG-----KE---------PNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~p~i~~~l~~~f~~-----~~---------v~~~~~p~~avA~GAa~~aa~~s 413 (667)
.-.+.|.+|||+...|.+...|++..-+ .. .-+..||...+=+|||++|..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3467899999999999999999987621 21 12346888889999999986543
No 180
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.15 E-value=1.1e+02 Score=30.42 Aligned_cols=59 Identities=20% Similarity=0.418 Sum_probs=37.6
Q ss_pred hccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCC---CHHHHHHHHHHHHHHHH
Q 005955 571 RNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSA---EKEDYEEKLKEVEAVCN 637 (667)
Q Consensus 571 ~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~-~~~---~~~~~~~kl~~l~~~~~ 637 (667)
-+.||.++..+-+.|.+.+-++ ..++++...+=.||.+| .+. +.+.|+++.+-++.++.
T Consensus 141 ~g~le~~m~~iMqqllSKEILy--------eplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~ 203 (267)
T KOG3133|consen 141 SGDLEPIMESIMQQLLSKEILY--------EPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIES 203 (267)
T ss_pred CccHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888877776544232 25778888889999988 333 34445555444444443
No 181
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=39.42 E-value=1.2e+02 Score=22.69 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=26.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005955 175 AVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (667)
Q Consensus 175 ~viTVPa~~~~~qr~~l~~Aa~~AGl~~~ 203 (667)
..++.|+.++..||..+.+.|+..||...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 56889999999999999999999998754
No 182
>PRK12408 glucokinase; Provisional
Probab=39.35 E-value=19 Score=37.74 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.8
Q ss_pred ccCCcEEEEEcCccceEEEEEEC
Q 005955 33 TKLGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~ 55 (667)
+++..++|+|+|.|++++++++.
T Consensus 13 ~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 13 PRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cccccEEEEEcChhhhheeEEec
Confidence 55667999999999999999963
No 183
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=38.49 E-value=1.3e+02 Score=29.95 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHH
Q 005955 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL 382 (667)
Q Consensus 331 r~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l 382 (667)
++..+.+...++-.....|+..+++.......-..++++||.++ .+...+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhc
Confidence 45566777777777777777777664322223467999999864 444443
No 184
>PRK07058 acetate kinase; Provisional
Probab=37.67 E-value=1.8e+02 Score=31.11 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHc
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 386 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f 386 (667)
-.+.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.+
T Consensus 300 ~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 300 LFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 33444444444433332 3599999999999 9999999999887
No 185
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=37.08 E-value=27 Score=38.04 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=47.2
Q ss_pred eCCCCCHHHHHHHHHHHHHcCCc---eeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeC
Q 005955 179 VPAYFNDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN 246 (667)
Q Consensus 179 VPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 246 (667)
++......-.+.+.+|.+.-|+. ++.++++.++.-++..+.. +++++-+=+|.||--+.+.+..+
T Consensus 185 ~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~---~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 185 ATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED---PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred chhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC---CCcEEEEEECCCccceeeeeccc
Confidence 34444555667888888888875 6778999999877665544 35778888899998877777653
No 186
>PLN02377 3-ketoacyl-CoA synthase
Probab=37.04 E-value=97 Score=34.42 Aligned_cols=55 Identities=7% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEE-ecCccCcHHHHHHHHhHcC
Q 005955 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (667)
Q Consensus 333 ~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~sr~p~i~~~l~~~f~ 387 (667)
.++...++..+-+...++++|+++++++.+||.|++ +.+....|.+..+|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 345555555556678889999999999999999987 4445568999999999993
No 187
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=36.83 E-value=1.5e+02 Score=29.66 Aligned_cols=62 Identities=23% Similarity=0.459 Sum_probs=32.3
Q ss_pred hccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCC-CCCHHH---HHHHHHHHHHHHHHHH
Q 005955 571 RNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQ-SAEKED---YEEKLKEVEAVCNPII 640 (667)
Q Consensus 571 ~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~-~~~~~~---~~~kl~~l~~~~~~i~ 640 (667)
...++..+..+-+.|...+-++ ..+++...++=.||.+|. ..+.++ |++++.-+++++....
T Consensus 121 ~~~~~~~l~~mm~qL~SKevLY--------ePmKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~~~v~~I~~~fE 186 (248)
T PF04614_consen 121 DEDFDKMLQGMMQQLLSKEVLY--------EPMKELRDKYPEWLEENKSKLSAEDYERYEKQYELVKEICAIFE 186 (248)
T ss_dssp ----HHHHHHHHHHHTSHHHHH--------HHHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhccHhhhh--------hhHHHHHHHhHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666665555433222 357778888888888773 344444 4444444444444433
No 188
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=36.80 E-value=29 Score=33.56 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCc---eeeeecchHHHHHHhhc
Q 005955 184 NDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGL 218 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AaAl~y~~ 218 (667)
...-.+.+.+|....|++ ++.++|+.+|..++.++
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 334456677777777775 56789999998776543
No 189
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=35.44 E-value=24 Score=31.34 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.5
Q ss_pred EEEEcCccceEEEEEECC
Q 005955 39 IGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g 56 (667)
+|||+|+..+.+|+.++.
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999988653
No 190
>PRK00292 glk glucokinase; Provisional
Probab=35.15 E-value=36 Score=35.33 Aligned_cols=43 Identities=28% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcc---------cCC--CceEEEEEEcCCce
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLD---------KKG--GEKNILVFDLGGGT 236 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~---------~~~--~~~~vlVvD~GggT 236 (667)
..+..|++.+.+.|+-.|+|++-... ... ..+.++++-+|.|-
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 33456887788999999999975331 111 13567888888664
No 191
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=34.60 E-value=66 Score=29.28 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=16.9
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEE
Q 005955 38 VIGIDLGTTYSCVGVYK--NGHVEII 61 (667)
Q Consensus 38 viGID~GTt~s~va~~~--~g~~~ii 61 (667)
|+|||-|++++..|+.+ ++.+..+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 68999999999999985 3445544
No 192
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=34.59 E-value=55 Score=34.56 Aligned_cols=46 Identities=26% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCC-CC--CCCCCchhHHHhHHHH
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK-EP--NKGVNPDEAVAYGAAV 407 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~-~v--~~~~~p~~avA~GAa~ 407 (667)
+++.|++.||-+..+.+.+.+.+.+... +| .-..+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 5899999999999999999998887322 22 2233446778888764
No 193
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=33.97 E-value=1.1e+02 Score=22.71 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 005955 160 MKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (667)
Q Consensus 160 l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~ 202 (667)
+.+..+.++... .-.++.|+ ++..+|..+.+.|...|+..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 344444444333 44678898 89999999999999999864
No 194
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=33.54 E-value=1.3e+02 Score=32.33 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=23.1
Q ss_pred CceEEEEEEcCCceeEEEEEEEeC-CeEE
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDN-GVFE 250 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~-~~~~ 250 (667)
..+.+|++|+||..+-++.+++.+ +.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~ 101 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFD 101 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcc
Confidence 467899999999999999999983 4443
No 195
>PRK04325 hypothetical protein; Provisional
Probab=32.93 E-value=2.3e+02 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005955 625 YEEKLKEVEAVCNPIITAVYQRSGGA 650 (667)
Q Consensus 625 ~~~kl~~l~~~~~~i~~r~~e~~~~~ 650 (667)
-+..+..|+..+.-+..|+.+..+++
T Consensus 35 Qq~~I~~L~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 35 QQQTLDLLQAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34456777777777777877754333
No 196
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=32.43 E-value=75 Score=28.67 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=20.0
Q ss_pred CcEEEEEcCccceEEEEEE--CCeEEEE
Q 005955 36 GTVIGIDLGTTYSCVGVYK--NGHVEII 61 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~--~g~~~ii 61 (667)
+.+++||+|+-|...++.+ ++.+.++
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEE
Confidence 4689999999999999986 3334444
No 197
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=31.25 E-value=60 Score=35.83 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=17.7
Q ss_pred CcEEEEEcCccceEEEEEE
Q 005955 36 GTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (667)
..++|||.|||.+++++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 5789999999999999997
No 198
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=30.82 E-value=1.1e+02 Score=25.98 Aligned_cols=45 Identities=29% Similarity=0.470 Sum_probs=31.2
Q ss_pred eEEEEEEEcCC-ceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHH
Q 005955 505 QIEVTFEVDAN-GILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEF 557 (667)
Q Consensus 505 ~i~v~~~~d~~-g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 557 (667)
...+.|.+|.+ |.+.|++.|..||+... .++++++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 35688888875 88999999999987543 36788887777666654
No 199
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=30.13 E-value=1.1e+02 Score=30.82 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCC-----------CceEEEEEEcCCceeE
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFD 238 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~-----------~~~~vlVvD~GggT~d 238 (667)
.++|+|--..=-..||..=| -.-..|++.-+++-+|+-+|+.||++..- +++.-|-+=+-+|||.
T Consensus 251 ~H~VLswt~~D~N~qk~LNr-kllk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTN 326 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNR-KLLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTN 326 (403)
T ss_pred CceEEEeeccChHHHHHHHH-HHHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcc
Confidence 46677543222233443333 33456799999999999999999886431 3444455555555544
No 200
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=29.53 E-value=54 Score=32.60 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.1
Q ss_pred EEEEcCccceEEEEEECCe
Q 005955 39 IGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g~ 57 (667)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999998764
No 201
>PRK13324 pantothenate kinase; Reviewed
Probab=28.69 E-value=62 Score=32.52 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEECCe
Q 005955 38 VIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (667)
++.||+|+|+++.++++.+.
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998553
No 202
>PLN03173 chalcone synthase; Provisional
Probab=27.39 E-value=2.1e+02 Score=30.75 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHcC
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f~ 387 (667)
...+=..+.++++|+++++++.+|+.|+++.-+. ..|.+.-.|.+.++
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3444456778999999999999999998776444 58999999999993
No 203
>PHA00490 terminal protein
Probab=27.37 E-value=60 Score=30.55 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCC
Q 005955 620 AEKEDYEEKLKEVEAVCNPIITAVYQR---SGGAPGA 653 (667)
Q Consensus 620 ~~~~~~~~kl~~l~~~~~~i~~r~~e~---~~~~~~~ 653 (667)
+...++..--++.+.+++.+..|+..+ |||.|+|
T Consensus 89 aki~EI~~nTKeaQrvvde~~~~~~Dke~isGGk~qG 125 (266)
T PHA00490 89 AKIDEIESNTKEAQRVVDEILDRFNDKEVISGGKSQG 125 (266)
T ss_pred hHHHHHHhccHHHHHHHHHHHHHhcCcceeeCCCCCC
Confidence 345566667788889999999999888 7777544
No 204
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=27.22 E-value=1.3e+02 Score=34.20 Aligned_cols=44 Identities=32% Similarity=0.626 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhcC---C-----CCC---HHHHHHHHHHHHHHHHHHHHH
Q 005955 599 EKDKIETAVKEALEWLDDN---Q-----SAE---KEDYEEKLKEVEAVCNPIITA 642 (667)
Q Consensus 599 ~~~~i~~~l~~~~~Wl~~~---~-----~~~---~~~~~~kl~~l~~~~~~i~~r 642 (667)
+..+....+.+++.|++.. + .++ .+++..+.++|.+.+.||..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 6677888889999999864 1 223 388999999999999998764
No 205
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.01 E-value=3e+02 Score=30.29 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=32.8
Q ss_pred EEEEEEcCCceeEEEEEEEeCCeEEEEE-ecCCCCCcchHHHHHHH
Q 005955 226 NILVFDLGGGTFDVSILTIDNGVFEVLS-TNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~~~~v~~-~~~~~~lGG~~id~~l~ 270 (667)
+=+-+|+|.+++-+-++....+...... +....--||+++|.+..
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 3467999999999999999877544333 34444569999987653
No 206
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=26.97 E-value=31 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.1
Q ss_pred EEEEcCccceEEEEEEC
Q 005955 39 IGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 39 iGID~GTt~s~va~~~~ 55 (667)
+|||+|||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999999863
No 207
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=26.95 E-value=75 Score=30.60 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 005955 38 VIGIDLGTTYSCVGVYKNGHV 58 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~ 58 (667)
++-||+|+|++++++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987743
No 208
>PLN02854 3-ketoacyl-CoA synthase
Probab=26.78 E-value=1.8e+02 Score=32.53 Aligned_cols=54 Identities=11% Similarity=0.282 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEE-ecCccCcHHHHHHHHhHcC
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~sr~p~i~~~l~~~f~ 387 (667)
+++..++.-.-+...+.++|+++++++.+|+.|++ +.+....|.+..+|.+.++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 34444444444567788999999999999999987 4444468999999999993
No 209
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=26.74 E-value=1.6e+02 Score=31.02 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=35.3
Q ss_pred cCcceEEEecCccCc-HHHHHHHH---hHc--CCCCCCCCCCchhHHHhHHHHhh
Q 005955 361 NQIDEIVLVGGSTRI-PKVQQLLK---DYF--DGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~-p~i~~~l~---~~f--~~~~v~~~~~p~~avA~GAa~~a 409 (667)
..++.|+++|..-+. |..++.+. +++ +..++....|...+.|.||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 457899999999875 67788888 444 23455566788999999998753
No 210
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=26.25 E-value=69 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.0
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 005955 38 VIGIDLGTTYSCVGVYKNGHV 58 (667)
Q Consensus 38 viGID~GTt~s~va~~~~g~~ 58 (667)
.+.||+|+|+++.|+++++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 589999999999999986643
No 211
>PLN03170 chalcone synthase; Provisional
Probab=26.23 E-value=2e+02 Score=31.00 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHcC
Q 005955 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (667)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f~ 387 (667)
.+...+=..+..+++|+++++++.+|+.|+++-.+. ..|.+.-.|.+.++
T Consensus 103 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 103 VVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 334444456778999999999999999988766444 69999999999993
No 212
>PF05435 Phi-29_GP3: Phi-29 DNA terminal protein GP3; InterPro: IPR008770 This family consists of DNA terminal protein Gp3 sequences from phi-29 like bacteriophage. DNA terminal protein Gp3 is linked to the 5' ends of both strands of the genome through a phosphodiester bond between the beta-hydroxyl group of a serine residue and the 5'-phosphate of the terminal deoxyadenylate. This protein is essential for DNA replication and is involved in the priming of DNA elongation [].; GO: 0006260 DNA replication, 0006269 DNA replication, synthesis of RNA primer, 0018142 protein-DNA covalent cross-linking; PDB: 2EX3_D.
Probab=25.90 E-value=97 Score=29.25 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCC
Q 005955 622 KEDYEEKLKEVEAVCNPIITAVYQR---SGGAPGA 653 (667)
Q Consensus 622 ~~~~~~kl~~l~~~~~~i~~r~~e~---~~~~~~~ 653 (667)
..++..--++.+.+++.+..|+..+ |||+|+|
T Consensus 91 i~EIe~nTKeaQr~vde~~~~~~Dke~isGGk~qG 125 (266)
T PF05435_consen 91 IDEIESNTKEAQRVVDEILDRFNDKEVISGGKSQG 125 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcccccccCCCCCC
Confidence 3455555666777778888887777 7777554
No 213
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=25.57 E-value=4.4e+02 Score=22.72 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005955 568 IDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITA 642 (667)
Q Consensus 568 ~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r 642 (667)
.+|++.++.+...++..-.- +.-++.-++.+.|...+..+...+..+ ++.+.-..++.|+..+..|..+
T Consensus 45 ~~A~~~~~~l~~~W~k~~~~---~~~~~~h~eid~i~~sl~rl~~~i~~~---dk~~~l~el~~lk~~i~~i~~~ 113 (121)
T PF14276_consen 45 EKAYKETEELEKEWDKNKKR---WSILIEHQEIDNIDISLARLKGYIEAK---DKSESLAELAELKELIEHIPEM 113 (121)
T ss_pred HHHHHHHHHHHHHHHhhchh---eeeeecHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666665555544322 556788899999999999999999887 6778888899999988888764
No 214
>PLN03172 chalcone synthase family protein; Provisional
Probab=25.02 E-value=2.2e+02 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHcC
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f~ 387 (667)
...+...+=..+..+++|+++++.+.+|+.|+++-.+. ..|.+.-.|.+.++
T Consensus 97 ~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33344445556778999999999999999988766554 69999999999993
No 215
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=24.15 E-value=2.7e+02 Score=21.72 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=32.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCcee-eEEEecCCCCCCHHHHHHHHHHHH
Q 005955 506 IEVTFEVDANGILNVKAEDKGTGKSE-KITITNDKGRLSQEEIDRMVREAE 555 (667)
Q Consensus 506 i~v~~~~d~~g~l~v~~~~~~~~~~~-~~~i~~~~~~l~~~~~~~~~~~~~ 555 (667)
....++++.+|.++|...+..+|... .++=.....-.+..++.+++.++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEEEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 56788999999999999999888762 222111112345566666665543
No 216
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.12 E-value=2e+02 Score=31.47 Aligned_cols=51 Identities=6% Similarity=0.073 Sum_probs=32.5
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhc
Q 005955 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 281 (667)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 281 (667)
+|||+.+|-++++...+..+...+....+..= .|+...+++...++++++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~~~ 51 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNEDL 51 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHHhc
Confidence 59999999999998887766666554432222 3665554444455555443
No 217
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=23.86 E-value=1.7e+02 Score=31.53 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHH-HHHHhhccc
Q 005955 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDK 220 (667)
Q Consensus 172 ~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aAl~y~~~~ 220 (667)
+.++|++.|..-+..--..+.-||.++|.+.+.-+--.-| ||++||...
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 4688888887766556678889999999998888877766 578998654
No 218
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=22.99 E-value=42 Score=37.08 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEEcCccceEEEEEEC
Q 005955 39 IGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 39 iGID~GTt~s~va~~~~ 55 (667)
+|||+|||++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 59999999999999963
No 219
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=22.71 E-value=70 Score=34.74 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
++++++||-|||++++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 579999999999999988853
No 220
>PHA02557 22 prohead core protein; Provisional
Probab=22.31 E-value=6.3e+02 Score=25.32 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005955 546 EIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDY 625 (667)
Q Consensus 546 ~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~ 625 (667)
.+..|..++..+. .......+..+.|+.++..+.+..--.+ ..+-+++.+++++...+.-++- .+.|
T Consensus 142 vV~em~~~L~E~e---~~~~~l~~en~~l~e~i~~~~r~~i~~e-~t~gLtdsQkeKv~~L~Egvef---------~e~F 208 (271)
T PHA02557 142 VVAEMEEELDEME---EELNELFEENVALEEYINEVKREVILSE-VTKDLTESQKEKVASLAEGLEF---------SETF 208 (271)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcchhHHHHHHHHHHHhccch---------hhHH
Confidence 3445555544443 3334455666777777766654422111 5567888888888877764432 4689
Q ss_pred HHHHHHHHHHHHHHHH
Q 005955 626 EEKLKEVEAVCNPIIT 641 (667)
Q Consensus 626 ~~kl~~l~~~~~~i~~ 641 (667)
..|+..+...+.+...
T Consensus 209 ~~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 209 SKKLTAIVEMVFKSKD 224 (271)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999888866543
No 221
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=22.14 E-value=97 Score=18.78 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=13.7
Q ss_pred CccccchhhhHHHH-HHHHhhhh
Q 005955 2 AGSWRARGSLVVLA-IVFFGGLF 23 (667)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~ 23 (667)
++|||-.+.+.++. +..+.++.
T Consensus 1 ~gt~~~~~~l~lLLlLLGLwGfa 23 (25)
T PF11052_consen 1 AGTVRGSGLLPLLLLLLGLWGFA 23 (25)
T ss_pred CCceeccchHHHHHHHHHHHHHh
Confidence 57888888875544 44444443
No 222
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=21.98 E-value=2.3e+02 Score=24.74 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=30.6
Q ss_pred EEEEEEEcC-CceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHH
Q 005955 506 IEVTFEVDA-NGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAE 555 (667)
Q Consensus 506 i~v~~~~d~-~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 555 (667)
-.+.|++|. -|.+.|++.|..||+... .++++++-++.+++.
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR--------qIPpee~L~l~~r~~ 109 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR--------QIPPEEALELAARMR 109 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh--------hCChHHHHHHHHHHH
Confidence 457888877 499999999999987443 467777766655444
No 223
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=21.91 E-value=77 Score=34.97 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=18.9
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (667)
+.++|||||||..-.+++++..
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~ 23 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQ 23 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcC
Confidence 4588999999999999999743
No 224
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=21.82 E-value=1.1e+02 Score=27.49 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCcEEEEEcCccc-----eEEEEEECCeE
Q 005955 35 LGTVIGIDLGTTY-----SCVGVYKNGHV 58 (667)
Q Consensus 35 ~~~viGID~GTt~-----s~va~~~~g~~ 58 (667)
|..+++|||-|++ +.-|+.+.+..
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCeE
Confidence 4578999999998 99888876644
No 225
>PLN03168 chalcone synthase; Provisional
Probab=21.78 E-value=2.5e+02 Score=30.08 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCc-cCcHHHHHHHHhHcCCCC
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKE 390 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~i~~~l~~~f~~~~ 390 (667)
.+-..+...+=..+..+++|+++++++.+|+.|+++-.+ -.+|.+.-.|.+.+ |.+
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~L-Gl~ 150 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLL-GLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHh-CcC
Confidence 333344444555677899999999999999999876332 35899999999999 443
No 226
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=21.62 E-value=1.7e+02 Score=27.09 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=25.2
Q ss_pred CcEEEEEcCccc-eEEEEEECCeEEEEecCCCC
Q 005955 36 GTVIGIDLGTTY-SCVGVYKNGHVEIIANDQGN 67 (667)
Q Consensus 36 ~~viGID~GTt~-s~va~~~~g~~~ii~~~~g~ 67 (667)
+.+.|||+|--. +++|++.+|..+++..+..+
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEccccc
Confidence 357899999766 57888899999999876553
No 227
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=21.49 E-value=1.1e+02 Score=26.16 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 606 AVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 606 ~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
-++.+.+||.++-..-.+.+++.+.+|++++..++..+.-
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777663344555666667777777777766554
No 228
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=21.35 E-value=63 Score=35.13 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHH-----HcCCce------eeeecchHHHHHHhhcccCC-----CceEEEEEEcCCceeEEEEEE
Q 005955 185 DAQRQATKDAGI-----IAGLNV------ARIINEPTAAAIAYGLDKKG-----GEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 185 ~~qr~~l~~Aa~-----~AGl~~------~~li~Ep~AaAl~y~~~~~~-----~~~~vlVvD~GggT~dvsv~~ 243 (667)
...|+++++... .=|++. ..+++-|.|+..+.-+-... .-..++++|+||-|||+-.+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 456777766632 124433 23566666654433222111 113589999999999986654
No 229
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=21.12 E-value=2.3e+02 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCCccCcceEE-EecCccCcHHHHHHHHhHcC
Q 005955 344 KTMGPVKKAMEDAGLEKNQIDEIV-LVGGSTRIPKVQQLLKDYFD 387 (667)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~~i~~Vi-LvGG~sr~p~i~~~l~~~f~ 387 (667)
-+...|+++|+++++++.+|+.++ -+..++-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 456778899999999999999764 46677899999999999993
No 230
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=21.09 E-value=3e+02 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=31.2
Q ss_pred CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHH
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 266 (667)
+...++++|+|..++-+.+.+.....+.+.......--.|.-+|
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~d 65 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVD 65 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEee
Confidence 46688999999999998888766555555555444445566555
No 231
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=20.78 E-value=1.4e+02 Score=32.19 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHH-HHHHhhcccC
Q 005955 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDKK 221 (667)
Q Consensus 172 ~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aAl~y~~~~~ 221 (667)
+.++|++.|.. +..---.+.-||..+|.+.+.-+--..| ||++||...-
T Consensus 151 V~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetI 200 (425)
T PRK00877 151 VKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESI 200 (425)
T ss_pred CCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCC
Confidence 56888888875 4344567788999999998888777776 6889987543
No 232
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.53 E-value=90 Score=29.30 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.1
Q ss_pred EEEEcCccceEEEEEECC
Q 005955 39 IGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 39 iGID~GTt~s~va~~~~g 56 (667)
||||.|.||+=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999998888765
No 233
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=20.26 E-value=7.9e+02 Score=26.14 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=44.2
Q ss_pred HHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 005955 565 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIIT 641 (667)
Q Consensus 565 ~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~ 641 (667)
..+..|+..++..+-+++.. ..++.++|.+|.+.++.+..-|. .+-..|..|...+.|+..
T Consensus 217 ~~~~~A~~~l~~~~~~V~~d--------~~lT~~Qk~~l~d~l~~Y~~~l~--------~i~~qL~~L~~~L~~L~~ 277 (379)
T PF04518_consen 217 KSCERAKAVLNKQLARVKAD--------AKLTSEQKSELLDSLNNYKDNLN--------AISNQLSLLQSLLAPLSI 277 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcc--------cccCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcccee
Confidence 44556666666665555422 35888999999999987776554 567788889998888876
No 234
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.23 E-value=4.9e+02 Score=21.30 Aligned_cols=66 Identities=17% Similarity=0.363 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHH--HhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC
Q 005955 545 EEIDRMVREAEEFA--EEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN 617 (667)
Q Consensus 545 ~~~~~~~~~~~~~~--~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~ 617 (667)
++++.++..++.+. ..+.......+++..++..+..+++.+.+. . ..-++...+....++++..++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~---~----~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA---A----DQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHC
Confidence 34555555544443 223334455667777777777777776552 1 223445666666677776665
No 235
>PLN02192 3-ketoacyl-CoA synthase
Probab=20.13 E-value=3.1e+02 Score=30.53 Aligned_cols=54 Identities=7% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecC-ccCcHHHHHHHHhHcC
Q 005955 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGG-STRIPKVQQLLKDYFD 387 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~sr~p~i~~~l~~~f~ 387 (667)
+++..++...-+...++++|+++++++.+||.|++... ....|.+..+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 44555555555677889999999999999998876533 2358999999999993
Done!