Query 005955
Match_columns 667
No_of_seqs 351 out of 2597
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9q_A Chaperone protein DNAK; 100.0 5E-101 2E-105 865.0 70.4 594 35-645 1-604 (605)
2 3d2f_A Heat shock protein homo 100.0 6E-101 2E-105 869.3 68.4 602 35-646 1-627 (675)
3 2kho_A Heat shock protein 70; 100.0 3E-99 1E-103 850.6 58.8 594 35-645 1-604 (605)
4 1yuw_A Heat shock cognate 71 k 100.0 2.4E-94 8.2E-99 803.3 53.1 550 35-585 3-553 (554)
5 2v7y_A Chaperone protein DNAK; 100.0 6.3E-84 2.1E-88 714.2 53.2 505 35-575 1-509 (509)
6 3i33_A Heat shock-related 70 k 100.0 2.3E-63 7.9E-68 536.9 44.2 380 34-414 21-403 (404)
7 3qfu_A 78 kDa glucose-regulate 100.0 2.6E-62 8.8E-67 527.3 44.1 379 34-413 16-394 (394)
8 4gni_A Putative heat shock pro 100.0 7.3E-61 2.5E-65 517.9 39.2 378 36-415 13-404 (409)
9 1dkg_D Molecular chaperone DNA 100.0 2.5E-59 8.5E-64 501.8 39.6 373 35-413 1-383 (383)
10 1jce_A ROD shape-determining p 100.0 2.7E-40 9.3E-45 348.6 24.4 310 36-413 3-327 (344)
11 4e81_A Chaperone protein DNAK; 100.0 5.9E-38 2E-42 303.3 25.7 215 424-645 2-216 (219)
12 1u00_A HSC66, chaperone protei 100.0 1.5E-35 5.2E-40 289.7 27.6 214 427-647 2-215 (227)
13 3n8e_A Stress-70 protein, mito 100.0 6.5E-31 2.2E-35 245.3 16.9 166 420-586 17-182 (182)
14 3h0x_A 78 kDa glucose-regulate 100.0 1.8E-28 6E-33 223.2 17.9 151 425-575 2-152 (152)
15 3dob_A Heat shock 70 kDa prote 100.0 1.3E-28 4.5E-33 223.6 16.3 151 425-575 2-152 (152)
16 3dqg_A Heat shock 70 kDa prote 100.0 2.1E-28 7.3E-33 221.9 14.7 150 425-575 2-151 (151)
17 2fsj_A Hypothetical protein TA 99.9 1.5E-27 5.2E-32 250.1 11.9 227 147-410 95-343 (346)
18 2op6_A Heat shock 70 kDa prote 99.9 1.9E-26 6.4E-31 211.4 16.9 151 425-575 2-152 (152)
19 2ych_A Competence protein PILM 99.9 4.3E-27 1.5E-31 250.9 12.8 320 36-410 13-373 (377)
20 3h1q_A Ethanolamine utilizatio 99.9 2.5E-25 8.5E-30 226.2 23.3 203 150-409 70-272 (272)
21 4a2a_A Cell division protein F 99.9 3.1E-24 1.1E-28 229.7 19.7 198 186-411 168-393 (419)
22 1k8k_A ARP3, actin-like protei 99.9 1.6E-24 5.5E-29 234.1 17.2 225 172-411 107-387 (418)
23 2fxu_A Alpha-actin-1, actin, a 99.9 3.2E-24 1.1E-28 228.0 17.0 298 37-411 6-349 (375)
24 2zgy_A Plasmid segregation pro 99.9 2.2E-22 7.4E-27 209.2 6.3 227 145-409 72-319 (320)
25 1q5l_A Chaperone protein DNAK; 99.9 3.8E-21 1.3E-25 171.1 13.3 119 420-538 14-132 (135)
26 1k8k_B ARP2, actin-like protei 99.8 1.7E-19 5.9E-24 192.5 5.3 215 173-411 105-364 (394)
27 4ehu_A Activator of 2-hydroxyi 99.7 1E-17 3.5E-22 170.2 13.4 185 198-412 69-255 (276)
28 3js6_A Uncharacterized PARM pr 99.7 2.5E-17 8.4E-22 172.4 13.2 203 173-413 114-338 (355)
29 4apw_A ALP12; actin-like prote 99.6 2.2E-15 7.6E-20 156.4 7.4 202 173-411 106-324 (329)
30 3dwl_A Actin-related protein 3 99.5 3E-14 1E-18 152.4 8.5 242 151-411 103-396 (427)
31 3qb0_A Actin-related protein 4 99.5 1.8E-13 6.2E-18 147.7 13.9 178 37-275 24-209 (498)
32 3lof_A Heat shock 70 kDa prote 99.5 2.4E-13 8.4E-18 117.3 10.9 85 563-648 3-87 (113)
33 2p32_A Heat shock 70 kDa prote 99.3 3.3E-12 1.1E-16 111.3 6.5 89 564-653 13-101 (120)
34 1ud0_A HSC70, 70 kDa heat-shoc 99.2 1.5E-11 5E-16 106.3 6.1 85 567-652 2-86 (113)
35 4fo0_A Actin-related protein 8 99.2 2.6E-10 9E-15 128.4 18.0 117 149-275 170-293 (593)
36 2d0o_A DIOL dehydratase-reacti 99.2 1.6E-10 5.4E-15 121.7 12.9 197 186-411 368-604 (610)
37 1nbw_A Glycerol dehydratase re 99.1 2.3E-10 7.9E-15 121.0 13.6 194 188-410 372-605 (607)
38 1hux_A Activator of (R)-2-hydr 98.9 9.3E-08 3.2E-12 95.9 20.6 171 203-412 77-257 (270)
39 3ll3_A Gluconate kinase; xylul 98.4 1E-06 3.4E-11 96.6 13.2 81 330-415 364-444 (504)
40 3hz6_A Xylulokinase; xylulose, 98.3 2E-06 6.8E-11 94.4 12.2 76 336-415 378-454 (511)
41 3ifr_A Carbohydrate kinase, FG 98.3 1.2E-05 3.9E-10 88.3 17.2 201 192-415 225-451 (508)
42 3ezw_A Glycerol kinase; glycer 98.2 1.3E-06 4.5E-11 96.3 8.1 79 329-415 371-453 (526)
43 4am6_A Actin-like protein ARP8 97.8 5.3E-05 1.8E-09 82.8 10.6 122 173-310 222-347 (655)
44 2ews_A Pantothenate kinase; PA 97.3 0.0024 8.1E-08 63.7 13.4 47 363-409 237-286 (287)
45 1t6c_A Exopolyphosphatase; alp 97.1 0.0017 5.7E-08 66.1 10.0 77 188-269 100-177 (315)
46 3mdq_A Exopolyphosphatase; str 97.1 0.019 6.5E-07 58.3 17.3 76 188-268 92-169 (315)
47 2ivn_A O-sialoglycoprotein end 97.0 0.18 6.2E-06 51.4 24.8 62 345-411 232-298 (330)
48 2i7n_A Pantothenate kinase 1; 97.0 0.0045 1.5E-07 63.4 12.2 71 334-409 278-358 (360)
49 3vgl_A Glucokinase; ROK family 96.9 0.085 2.9E-06 53.7 21.2 44 197-242 95-139 (321)
50 3eno_A Putative O-sialoglycopr 96.8 0.19 6.5E-06 51.3 22.5 69 341-414 233-306 (334)
51 2e2o_A Hexokinase; acetate and 96.8 0.52 1.8E-05 47.1 26.1 49 362-411 239-287 (299)
52 3vov_A Glucokinase, hexokinase 96.8 0.25 8.6E-06 49.7 22.8 49 362-410 237-294 (302)
53 3l0q_A Xylulose kinase; xlylul 96.6 0.0026 8.8E-08 70.4 7.6 86 328-415 408-493 (554)
54 4bc3_A Xylulose kinase; transf 96.6 0.0039 1.3E-07 68.6 8.4 77 335-413 407-483 (538)
55 3r8e_A Hypothetical sugar kina 96.6 0.097 3.3E-06 53.2 18.4 49 362-410 260-318 (321)
56 2itm_A Xylulose kinase, xylulo 96.5 0.0031 1E-07 68.5 7.1 79 336-415 360-438 (484)
57 4db3_A Glcnac kinase, N-acetyl 96.5 0.26 8.8E-06 50.2 21.2 48 362-409 269-324 (327)
58 3i8b_A Xylulose kinase; strain 96.5 0.0048 1.7E-07 67.4 8.5 78 330-415 395-475 (515)
59 2zf5_O Glycerol kinase; hypert 96.5 0.0046 1.6E-07 67.4 8.1 78 335-415 367-444 (497)
60 2ch5_A NAGK protein; transfera 96.3 0.96 3.3E-05 46.2 24.5 60 171-236 70-132 (347)
61 2gup_A ROK family protein; sug 96.2 0.32 1.1E-05 48.5 19.7 50 362-411 227-287 (292)
62 2qm1_A Glucokinase; alpha-beta 96.2 0.22 7.6E-06 50.5 18.7 49 363-411 263-321 (326)
63 3jvp_A Ribulokinase; PSI-II, N 96.1 0.0055 1.9E-07 67.9 6.4 80 330-414 410-490 (572)
64 3h3n_X Glycerol kinase; ATP-bi 96.1 0.011 3.8E-07 64.4 8.5 78 330-415 373-454 (506)
65 4htl_A Beta-glucoside kinase; 96.1 0.29 1E-05 49.0 18.4 50 362-411 237-291 (297)
66 3g25_A Glycerol kinase; IDP007 96.1 0.0059 2E-07 66.6 6.2 78 330-415 374-455 (501)
67 4e1j_A Glycerol kinase; struct 96.0 0.0047 1.6E-07 67.6 5.2 52 362-415 425-476 (520)
68 2dpn_A Glycerol kinase; thermu 96.0 0.012 4.1E-07 64.0 8.0 78 335-414 370-448 (495)
69 2p3r_A Glycerol kinase; glycer 96.0 0.012 4E-07 64.3 7.9 78 330-415 371-452 (510)
70 2d4w_A Glycerol kinase; alpha 95.8 0.017 5.7E-07 63.0 8.4 52 362-415 403-454 (504)
71 3cer_A Possible exopolyphospha 95.7 0.054 1.8E-06 55.6 10.9 78 188-269 105-191 (343)
72 2w40_A Glycerol kinase, putati 95.6 0.012 4.1E-07 64.2 6.1 51 363-415 407-458 (503)
73 2uyt_A Rhamnulokinase; rhamnos 95.5 0.025 8.5E-07 61.4 8.4 78 328-411 361-439 (489)
74 2ap1_A Putative regulator prot 95.3 0.45 1.6E-05 48.3 16.6 43 198-242 120-163 (327)
75 3en9_A Glycoprotease, O-sialog 95.1 0.85 2.9E-05 49.9 19.0 184 171-387 72-273 (540)
76 2hoe_A N-acetylglucosamine kin 95.0 1 3.5E-05 46.7 18.5 49 362-410 314-370 (380)
77 1u6z_A Exopolyphosphatase; alp 94.9 0.051 1.7E-06 59.1 8.3 75 189-269 100-176 (513)
78 1z6r_A MLC protein; transcript 94.4 0.82 2.8E-05 47.9 16.0 43 198-242 186-229 (406)
79 3h6e_A Carbohydrate kinase, FG 93.7 0.06 2.1E-06 58.1 5.5 72 335-412 362-436 (482)
80 1z05_A Transcriptional regulat 93.6 2.4 8.4E-05 44.6 17.9 43 198-242 208-251 (429)
81 1zbs_A Hypothetical protein PG 93.3 1.1 3.7E-05 44.6 13.9 69 336-412 210-281 (291)
82 1bdg_A Hexokinase; phosphotran 92.2 5.4 0.00018 42.2 17.9 58 184-244 171-230 (451)
83 3cet_A Conserved archaeal prot 89.8 0.22 7.4E-06 50.0 4.0 38 203-243 108-145 (334)
84 1cza_N Hexokinase type I; stru 89.3 7.2 0.00024 45.3 16.8 56 185-243 183-241 (917)
85 3bex_A Type III pantothenate k 88.7 1.1 3.8E-05 43.4 8.1 20 37-56 4-23 (249)
86 3hi0_A Putative exopolyphospha 87.6 1.2 4.2E-05 48.0 8.5 75 187-267 102-177 (508)
87 1zc6_A Probable N-acetylglucos 87.6 23 0.00079 34.9 25.7 64 337-410 227-292 (305)
88 3qbx_A Anhydro-N-acetylmuramic 86.6 1.9 6.4E-05 44.1 8.5 74 335-411 259-336 (371)
89 2yhx_A Hexokinase B; transfera 86.5 1.1 3.9E-05 47.5 7.3 56 186-244 164-221 (457)
90 3ven_A O-carbamoyltransferase 85.0 34 0.0011 37.1 17.8 80 331-415 280-361 (576)
91 3o8m_A Hexokinase; rnaseh-like 85.0 5.6 0.00019 42.3 11.6 59 184-245 184-244 (485)
92 3cqy_A Anhydro-N-acetylmuramic 82.7 2.8 9.6E-05 42.8 7.7 73 335-411 266-342 (370)
93 3ttc_A HYPF, transcriptional r 77.1 4.6 0.00016 44.7 7.7 49 363-411 600-651 (657)
94 3mcp_A Glucokinase; structural 74.5 11 0.00036 38.7 9.3 22 35-56 8-29 (366)
95 3vth_A Hydrogenase maturation 73.8 4.3 0.00015 45.8 6.6 64 346-414 682-750 (761)
96 1iv0_A Hypothetical protein; r 73.5 2.1 7.2E-05 34.8 2.9 20 37-56 2-21 (98)
97 3epq_A Putative fructokinase; 73.0 7.9 0.00027 38.5 7.7 38 197-235 96-134 (302)
98 4g9i_A Hydrogenase maturation 72.6 5.9 0.0002 44.9 7.4 62 346-412 694-760 (772)
99 3djc_A Type III pantothenate k 71.0 2.9 9.8E-05 40.9 3.8 23 35-57 1-23 (266)
100 4bc3_A Xylulose kinase; transf 70.1 2.8 9.4E-05 45.7 3.8 23 34-56 8-30 (538)
101 1nu0_A Hypothetical protein YQ 69.6 3.4 0.00012 35.8 3.6 21 36-56 3-23 (138)
102 2uyt_A Rhamnulokinase; rhamnos 68.8 2.4 8.3E-05 45.5 3.1 21 34-54 2-22 (489)
103 2p3r_A Glycerol kinase; glycer 67.9 2.7 9.4E-05 45.4 3.2 21 35-55 2-22 (510)
104 3i8b_A Xylulose kinase; strain 67.7 3.5 0.00012 44.6 4.0 20 35-54 4-23 (515)
105 3aap_A Ectonucleoside triphosp 66.5 7.7 0.00026 39.5 6.1 41 203-243 111-158 (353)
106 3h6e_A Carbohydrate kinase, FG 66.4 2.5 8.5E-05 45.3 2.5 21 35-55 5-25 (482)
107 3l0q_A Xylulose kinase; xlylul 65.8 3.7 0.00013 44.9 3.8 21 35-55 4-24 (554)
108 2w40_A Glycerol kinase, putati 64.8 3.4 0.00012 44.6 3.2 21 36-56 4-24 (503)
109 2dpn_A Glycerol kinase; thermu 64.1 3.3 0.00011 44.5 3.0 20 36-55 2-21 (495)
110 3h3n_X Glycerol kinase; ATP-bi 61.3 4.8 0.00016 43.4 3.6 21 35-55 4-24 (506)
111 2ews_A Pantothenate kinase; PA 61.3 4.9 0.00017 39.6 3.3 23 35-57 19-41 (287)
112 1vhx_A Putative holliday junct 61.2 4.2 0.00014 35.8 2.5 20 37-56 4-23 (150)
113 2zf5_O Glycerol kinase; hypert 60.5 4.5 0.00015 43.5 3.1 20 36-55 3-22 (497)
114 3jvp_A Ribulokinase; PSI-II, N 60.2 4.6 0.00016 44.3 3.2 21 35-55 4-24 (572)
115 1cza_N Hexokinase type I; stru 59.4 22 0.00075 41.2 8.9 58 184-244 630-690 (917)
116 2zqm_A Prefoldin beta subunit 57.8 60 0.0021 26.6 9.2 56 593-652 61-116 (117)
117 3hm8_A Hexokinase-3; glucose, 56.4 1.1E+02 0.0039 31.8 12.8 136 32-243 55-218 (445)
118 4ijn_A Acetate kinase, acetoki 56.4 1.6E+02 0.0056 30.0 13.6 25 362-386 323-348 (398)
119 3g25_A Glycerol kinase; IDP007 55.3 6.2 0.00021 42.5 3.2 20 36-55 6-25 (501)
120 4e1j_A Glycerol kinase; struct 52.7 7.6 0.00026 42.0 3.4 19 37-55 27-45 (520)
121 1hjr_A Holliday junction resol 52.3 17 0.00057 32.2 4.9 19 36-54 1-19 (158)
122 2aa4_A Mannac kinase, putative 52.0 19 0.00064 35.2 5.9 48 362-409 233-286 (289)
123 3cj1_A Ectonucleoside triphosp 49.6 27 0.00093 36.8 6.9 43 201-243 150-208 (456)
124 2itm_A Xylulose kinase, xylulo 48.2 8.9 0.0003 41.0 3.0 18 38-55 2-19 (484)
125 2d4w_A Glycerol kinase; alpha 47.3 9.6 0.00033 41.0 3.0 19 37-55 3-21 (504)
126 1woq_A Inorganic polyphosphate 46.0 12 0.00042 36.2 3.4 24 31-54 7-30 (267)
127 1naf_A ADP-ribosylation factor 46.0 1.5E+02 0.0053 25.9 10.0 113 543-658 30-153 (158)
128 4ep4_A Crossover junction endo 44.3 15 0.00052 32.8 3.4 19 36-54 1-19 (166)
129 3htv_A D-allose kinase, alloki 43.0 51 0.0018 32.6 7.5 51 361-411 238-299 (310)
130 2h3g_X Biosynthetic protein; p 42.7 17 0.00059 35.3 3.8 72 330-411 181-252 (268)
131 3f9m_A Glucokinase; hexokinase 42.4 82 0.0028 33.2 9.1 58 184-244 183-243 (470)
132 3zyy_X Iron-sulfur cluster bin 41.9 44 0.0015 36.6 7.1 81 325-409 498-582 (631)
133 3htv_A D-allose kinase, alloki 41.8 13 0.00043 37.1 2.7 25 31-55 2-26 (310)
134 2e1z_A Propionate kinase; TDCD 40.7 3.2E+02 0.011 28.1 15.3 26 361-386 329-355 (415)
135 1t0c_A Insulin; type I beta-tu 40.6 9.9 0.00034 22.1 0.9 9 647-655 12-20 (31)
136 1saz_A Probable butyrate kinas 40.3 50 0.0017 33.8 7.1 49 362-410 295-347 (381)
137 1saz_A Probable butyrate kinas 39.5 23 0.00077 36.4 4.3 22 35-56 1-22 (381)
138 2cpt_A SKD1 protein, vacuolar 39.2 1.3E+02 0.0046 24.8 8.2 97 549-663 13-114 (117)
139 1g99_A Acetate kinase; alpha/b 37.6 3.4E+02 0.011 27.8 12.5 42 341-386 305-347 (408)
140 3o8m_A Hexokinase; rnaseh-like 36.3 98 0.0034 32.7 8.6 25 223-247 78-102 (485)
141 2nr5_A Hypothetical protein SO 36.3 49 0.0017 22.7 4.0 25 593-617 39-63 (67)
142 4am6_A Actin-like protein ARP8 36.0 17 0.00058 39.9 2.7 47 340-386 476-524 (655)
143 1zxo_A Conserved hypothetical 35.9 14 0.0005 36.2 2.1 66 340-410 212-277 (291)
144 1sz2_A Glucokinase, glucose ki 35.5 21 0.00073 35.7 3.3 41 196-236 99-150 (332)
145 2wl8_A Peroxisomal biogenesis 35.5 79 0.0027 26.6 6.2 59 573-639 13-75 (126)
146 1nbw_A Glycerol dehydratase re 35.3 21 0.00072 38.3 3.2 32 173-204 131-162 (607)
147 3zx3_A Ectonucleoside triphosp 35.1 57 0.0019 34.2 6.5 42 202-243 151-199 (452)
148 2i7u_A Four-alpha-helix bundle 34.5 35 0.0012 23.1 3.0 8 647-654 28-35 (62)
149 2a01_A Apolipoprotein A-I; fou 34.3 41 0.0014 32.0 4.9 79 564-642 131-213 (243)
150 2yhx_A Hexokinase B; transfera 33.7 1.5E+02 0.0052 31.0 9.6 26 223-248 59-84 (457)
151 3cet_A Conserved archaeal prot 32.9 26 0.00089 35.0 3.3 39 37-75 1-44 (334)
152 2f9w_A Pantothenate kinase; CO 32.9 32 0.0011 33.4 3.9 21 37-57 24-45 (271)
153 4fla_A Regulation of nuclear P 32.7 1.2E+02 0.0042 26.4 7.2 47 598-644 96-145 (152)
154 3epq_A Putative fructokinase; 32.1 67 0.0023 31.6 6.3 49 362-410 224-288 (302)
155 1hnj_A Beta-ketoacyl-acyl carr 30.6 73 0.0025 31.3 6.3 48 336-386 211-258 (317)
156 1zxo_A Conserved hypothetical 29.3 14 0.00048 36.3 0.6 59 172-236 58-118 (291)
157 2q2r_A Glucokinase 1, putative 27.6 75 0.0026 32.2 5.9 21 35-55 28-48 (373)
158 2q2r_A Glucokinase 1, putative 27.1 36 0.0012 34.7 3.4 18 198-215 127-144 (373)
159 2ex3_B Protein GP3, DNA termin 27.1 52 0.0018 28.8 3.7 33 621-653 54-89 (230)
160 2yhw_A Bifunctional UDP-N-acet 26.7 1.4E+02 0.0046 29.7 7.6 43 198-242 131-174 (343)
161 4gic_A HDH, histidinol dehydro 26.4 69 0.0024 33.0 5.1 71 172-243 160-249 (423)
162 3zyy_X Iron-sulfur cluster bin 26.4 2.2E+02 0.0076 31.1 9.5 97 225-377 206-304 (631)
163 1msz_A DNA-binding protein smu 26.2 46 0.0016 26.0 2.9 28 175-202 34-61 (86)
164 2yhw_A Bifunctional UDP-N-acet 25.6 33 0.0011 34.4 2.7 20 36-55 30-49 (343)
165 3nuw_A 2-OXO-3-deoxygalactonat 25.1 56 0.0019 32.0 4.1 44 364-410 248-291 (295)
166 1ub7_A 3-oxoacyl-[acyl-carrier 24.2 99 0.0034 30.4 6.0 47 337-386 214-260 (322)
167 3r9p_A ACKA; ssgcid, seattle s 23.8 5.8E+02 0.02 25.9 13.8 25 362-386 314-339 (391)
168 2ebd_A 3-oxoacyl-[acyl-carrier 23.4 1.1E+02 0.0039 29.7 6.2 45 339-386 206-250 (309)
169 3f9m_A Glucokinase; hexokinase 22.5 2.1E+02 0.0071 30.1 8.1 25 223-247 75-99 (470)
170 2ra1_A Surface layer protein; 20.8 1.9E+02 0.0066 29.2 6.9 69 570-639 160-228 (412)
No 1
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=100.00 E-value=5e-101 Score=864.96 Aligned_cols=594 Identities=51% Similarity=0.855 Sum_probs=562.6
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||+||++++|.++++.|..|++++||+|+|.+ +++++|..|..+...+|.++++++||+||+.++++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 46799999999999999999999999999999999999999975 58999999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
.++...+.+||+++. .++...+. + .| ..++|+++++++|+++++.++.+++.++.++|||||++|++.||++++
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~--~-~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~ 155 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVE--V-KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATK 155 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEE--E-TT--EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEE--E-CC--EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 999999999999986 55655554 3 55 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeC----CeEEEEEecCCCCCcchHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN----GVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~id~~ 268 (667)
+|++.||++++++++||+|||++|+......+..++|||+||||+|++++++.+ +.++++++.++.++||.+||+.
T Consensus 156 ~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~ 235 (605)
T 4b9q_A 156 DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSR 235 (605)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHH
Confidence 999999999999999999999999988766678999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHH
Q 005955 269 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRK 344 (667)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~ 344 (667)
|++|+.+.|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.++|||++|+++++|++++
T Consensus 236 l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~ 315 (605)
T 4b9q_A 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315 (605)
T ss_dssp HHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888765543 6788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceE
Q 005955 345 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDIL 424 (667)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~ 424 (667)
+..+|+++|+.+++...+|+.|+||||+||+|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++.
T Consensus 316 i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~ 390 (605)
T 4b9q_A 316 SIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVL 390 (605)
T ss_dssp TTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHHHHHHHTS----SCSEE
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHHHHHhcCC----CCceE
Confidence 999999999999999999999999999999999999999999 7888899999999999999999999986 57899
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|++||+++.+|.+.++|+||+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|+|+||.|.|.+
T Consensus 391 l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 470 (605)
T 4b9q_A 391 LLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMP 470 (605)
T ss_dssp EECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCC
T ss_pred EEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHh
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQ 584 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~ 584 (667)
+|+|+|++|.||+|+|++.++.+|++.+++|+++ ..|+++|++++.++++++.++|++.+++.++||+||+|+|.+++.
T Consensus 471 ~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~ 549 (605)
T 4b9q_A 471 QIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQ 549 (605)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEECCEEESC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCCcEEEEEEEecCCCcEEEEEecCC-CCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 689999999999999999999999999999999999999999999
Q ss_pred hcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 585 INDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 585 l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
|++ +.+++++++++.|...++++++||+.+ +.++|++++++|++.+.|+..++++
T Consensus 550 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 550 VEE---AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHH---HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHh---hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 975 778999999999999999999999987 6999999999999999999999875
No 2
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=100.00 E-value=6.4e-101 Score=869.33 Aligned_cols=602 Identities=29% Similarity=0.486 Sum_probs=563.3
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
|+.+||||||||||+||++.+|.++++.|+.|++.+||+|+|.+++++||..|..+...+|.++++++||+||+.++++.
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CCcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (667)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 193 (667)
++...+++||+++. .+|...+.+.+ .|+.+.++|+++++++|+++++.|+.+++.++.++|||||++|++.||+++++
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~-~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 159 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRF-AGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIAD 159 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCCCceEEEEEe-CCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 99999999999986 67888888877 77667899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccC------CCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKK------GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~------~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 267 (667)
|++.||++++++++||+|||++|++.+. ..+.++||||+||||||++++++.++.++++++.++.++||.+||+
T Consensus 160 Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~ 239 (675)
T 3d2f_A 160 AARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDL 239 (675)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHH
T ss_pred HHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHH
Confidence 9999999999999999999999988653 2467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHH
Q 005955 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMG 347 (667)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~ 347 (667)
.|++|+.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.++.++.+.|||++|+++|.|+++++..
T Consensus 240 ~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~ 319 (675)
T 3d2f_A 240 AITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTE 319 (675)
T ss_dssp HHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999888888999999999999999999999999
Q ss_pred HHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEe
Q 005955 348 PVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLD 427 (667)
Q Consensus 348 ~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d 427 (667)
+|+++|+.+++++.+|+.|+|+||+||+|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ++++++.+.|
T Consensus 320 ~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~ls~~--~~v~~~~l~D 396 (675)
T 3d2f_A 320 PVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFED 396 (675)
T ss_dssp HHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHHHHHHTCSS--CCCCCCEEEE
T ss_pred HHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHHHHHHhCCC--CcccceEEEe
Confidence 999999999999999999999999999999999999999 6778889999999999999999999986 4578999999
Q ss_pred eccccCceeeeCC----eeEEEeeCCCCcCccceeeeeeccCCCceeEEEE-EecCccccc-cCceeeEEEeeCCCCCCC
Q 005955 428 VAPLTLGIETVGG----VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV-FEGERSLTK-DCRLLGKFDLSGIPPAPR 501 (667)
Q Consensus 428 ~~~~~~gi~~~~~----~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i-~~g~~~~~~-~~~~l~~~~l~~~~~~~~ 501 (667)
++|+++|+++.++ .+.+||++|+++|++++.+|++..|++ +.+ |+|++..+. +|..||+|.|+|+||.|.
T Consensus 397 v~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~----~~~~~~ge~~~~~~~n~~lg~f~l~gi~~~~~ 472 (675)
T 3d2f_A 397 IHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS----MAASYTDITQLPPNTPEQIANWEITGVQLPEG 472 (675)
T ss_dssp EECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE----EEEEESCGGGSCTTCCSEEEEEEEECCCCCSS
T ss_pred eeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce----EEEEEcCCcccccccCceeeEEEecCcCCCCC
Confidence 9999999999876 499999999999999999999876543 444 679888887 899999999999999999
Q ss_pred CCC-eEEEEEEEcCCceEEEEEe----------ecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 005955 502 GTP-QIEVTFEVDANGILNVKAE----------DKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDA 570 (667)
Q Consensus 502 ~~~-~i~v~~~~d~~g~l~v~~~----------~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a 570 (667)
|.+ +|+|+|.+|.||+|+|++. ++.+|+..+++|++...+||++++++++++++++..+|+..+++.++
T Consensus 473 g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~ 552 (675)
T 3d2f_A 473 QDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDR 552 (675)
T ss_dssp CSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 985 9999999999999999995 68889999999998766899999999999999999999999999999
Q ss_pred hccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005955 571 RNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKEDYEEKLKEVEAVCNPIITAVYQR 646 (667)
Q Consensus 571 ~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~-~~~~~~~~~~kl~~l~~~~~~i~~r~~e~ 646 (667)
+|+||+|+|.+|+.|.+ .+.+++++++++++...++++++|||++ .++++++|++|+++|+++++||..|++|+
T Consensus 553 ~n~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e~ 627 (675)
T 3d2f_A 553 KNTLEEYIYTLRGKLEE--EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAK 627 (675)
T ss_dssp HHHHHHHHHHHHHHHTT--TTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999976 3889999999999999999999999876 57899999999999999999999999887
No 3
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=100.00 E-value=3e-99 Score=850.55 Aligned_cols=594 Identities=52% Similarity=0.861 Sum_probs=557.2
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEec-CCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||+||++.+|.++++.|++|.+++||+|+|. +++++||..|+.+...+|.++++++||+||+.++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~ 80 (605)
T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp ---CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSST
T ss_pred CCCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcH
Confidence 3468999999999999999999999999999999999999995 468999999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
.++...+.+||+++. .+|...+.+ +| +.++|+++++++|+++++.|+.+++.++.++|||||++|++.||++++
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~i~~---~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~ 155 (605)
T 2kho_A 81 EVQRDVSIMPFKIIAADNGDAWVEV---KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATK 155 (605)
T ss_dssp THHHHHHHCSSCEEECTTSBEEEEE---TT--EEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhcCCeEEEECCCCceEEEE---CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHH
Confidence 899888899999874 666666554 56 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEe----CCeEEEEEecCCCCCcchHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~id~~ 268 (667)
+|++.||++++++++||+|||++|+......+..+||||+||||||++++++. ++.++++++.++.++||.+||+.
T Consensus 156 ~A~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~ 235 (605)
T 2kho_A 156 DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSR 235 (605)
T ss_dssp HHHHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHH
T ss_pred HHHHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHH
Confidence 99999999999999999999999998765357899999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC----cceEEEeeHHHHHHHHHHHHHH
Q 005955 269 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRK 344 (667)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~l~~~~~~~ 344 (667)
|++|+.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.++ .++.++|||++|+++++|++++
T Consensus 236 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~ 315 (605)
T 2kho_A 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315 (605)
T ss_dssp HHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGG
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999998899999999999999999999998888888876542 4677899999999999999999
Q ss_pred HHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceE
Q 005955 345 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDIL 424 (667)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~ 424 (667)
+..+|+++|+++++.+.+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. ++++.
T Consensus 316 i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~ 390 (605)
T 2kho_A 316 SIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVL 390 (605)
T ss_dssp GTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCC
T ss_pred HHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHHHHHhcCC----ccCce
Confidence 999999999999999899999999999999999999999999 6788889999999999999999998875 56888
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|+++|+++.+|.+.++|+||+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|+|+||.|.|.+
T Consensus 391 l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 470 (605)
T 2kho_A 391 LLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMP 470 (605)
T ss_dssp CSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCS
T ss_pred EEeeeeeeccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHh
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQ 584 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~ 584 (667)
+|+|+|.+|.||+|+|++.+..+|+..+++|+++ ..|+++++++++++++++..+|+..+++.+++|+||+|+|.+++.
T Consensus 471 ~i~v~f~id~~gil~v~a~~~~tg~~~~i~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~ 549 (605)
T 2kho_A 471 QIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQ 549 (605)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECTT-SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCceeEEEEEcCCCceeecccccc-cCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 889999999999999999999999999999999999999999999
Q ss_pred hcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 585 INDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 585 l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
|++ +.+++++++++.+.+.++++++||+++ +.++|++++++|++.++||..|+++
T Consensus 550 l~~---~~~~~~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 550 VEE---AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHH---HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHh---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 965 788999999999999999999999965 8999999999999999999999875
No 4
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=100.00 E-value=2.4e-94 Score=803.31 Aligned_cols=550 Identities=69% Similarity=1.073 Sum_probs=524.1
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
|+.+||||||||||++|++.+|.++++.|++|++++||+|+|.+++++||..|+.+...+|.++++++||+||++++++.
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 82 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 82 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
++..++.+||.++..+|.+.+.+.+ .|..+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 83 v~~~~~~~p~~v~~~~g~~~~~v~~-~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A 161 (554)
T 1yuw_A 83 VQSDMKHWPFMVVNDAGRPKVQVEY-KGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDA 161 (554)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEEE-TTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEecCCceEEEEEE-CCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 9999999999998878888888887 776788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
++.||++++++++||+|||++|+..... .+..++|||+||||+|++++++.++.++++++.++.++||.+||+.|++|+
T Consensus 162 ~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l 241 (554)
T 1yuw_A 162 GTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHF 241 (554)
T ss_dssp HHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred HHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999987653 468899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l 353 (667)
.++|+++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.++.++...++|++|+++++++++++..+|+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L 321 (554)
T 1yuw_A 242 IAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKAL 321 (554)
T ss_dssp HHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeeccccC
Q 005955 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (667)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~~~~ 433 (667)
+++++.+.+|+.|+|+||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++...++++++.+.|++|++|
T Consensus 322 ~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~sl 401 (554)
T 1yuw_A 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSL 401 (554)
T ss_dssp HHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCE
T ss_pred HHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEE
Confidence 99999999999999999999999999999999977888889999999999999999999875335577889999999999
Q ss_pred ceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEEEEc
Q 005955 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVD 513 (667)
Q Consensus 434 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~~~d 513 (667)
|+++.+|.+.++|+||++||.+++++|++..|+|+.+.|.+|||++....+|..||+|.|+|+|+.|.|.++|+|+|.+|
T Consensus 402 gi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 481 (554)
T 1yuw_A 402 GIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 481 (554)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEEC
T ss_pred EEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhh
Q 005955 514 ANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQI 585 (667)
Q Consensus 514 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l 585 (667)
.||+|+|++.++.+|+..+++|+++..+|+++++++++++++++..+|++.+++.++||+||+|+|.+|+.|
T Consensus 482 ~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 482 ANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp TTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred cCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998877899999999999999999999999999999999999999998776
No 5
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=100.00 E-value=6.3e-84 Score=714.18 Aligned_cols=505 Identities=59% Similarity=0.958 Sum_probs=469.5
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (667)
|+.+||||||||||++|++.+|.++++.|++|++++||+|+|.++++++|..|..+...+| ++++++|++||+.+
T Consensus 1 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~---- 75 (509)
T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDY---- 75 (509)
T ss_dssp CCCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCC----
T ss_pred CCCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCc----
Confidence 3568999999999999999999999999999999999999998789999999999999999 99999999999732
Q ss_pred HHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005955 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (667)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~A 194 (667)
. +.+ +| ..++|+++++++|++++..++.+++.++.++|||||++|++.||+++++|
T Consensus 76 ----------~-----------~~~-~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a 131 (509)
T 2v7y_A 76 ----------K-----------VEI-EG--KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDA 131 (509)
T ss_dssp ----------C-----------EEE-TT--EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred ----------E-----------EEE-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 1 122 55 46899999999999999999999999899999999999999999999999
Q ss_pred HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHH
Q 005955 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (667)
Q Consensus 195 a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 274 (667)
++.||++++++++||+|||++|+.... .+..+||||+||||||++++++.++.++++++.++.++||.+||+.|++|+.
T Consensus 132 ~~~AGl~~~~li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 210 (509)
T 2v7y_A 132 GRIAGLEVERIINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLV 210 (509)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred HHHcCCCeEEEecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999998765 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccC---C-cceEEEeeHHHHHHHHHHHHHHHHHHHH
Q 005955 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNNDLFRKTMGPVK 350 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~l~~~~~~~i~~~i~ 350 (667)
++|+++++.++..+++.+.+|+.+||++|+.||......+.++.+.+ | .++.+.|+|++|+++++|+++++..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 290 (509)
T 2v7y_A 211 NQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVR 290 (509)
T ss_dssp HHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999888888886654 2 4577899999999999999999999999
Q ss_pred HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCCCCCCccceEEEeecc
Q 005955 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (667)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~~~~~~~~~~~~d~~~ 430 (667)
++|+++++.+.+++.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++.+.|++|
T Consensus 291 ~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p 365 (509)
T 2v7y_A 291 QALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTP 365 (509)
T ss_dssp HHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCS
T ss_pred HHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeec
Confidence 999999999899999999999999999999999999 6778889999999999999999999875 56788899999
Q ss_pred ccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeEEEEE
Q 005955 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTF 510 (667)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i~v~~ 510 (667)
++||+++.++.+.++|+||+++|.+++.+|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.|.|.++|+|+|
T Consensus 366 ~slgi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f 445 (509)
T 2v7y_A 366 LSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTF 445 (509)
T ss_dssp SEEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEE
T ss_pred cccceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHH
Q 005955 511 EVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLE 575 (667)
Q Consensus 511 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE 575 (667)
++|.||+|+|++.+..+|+..+++|+++ ..|++++++++.++++++..+|+..+++.++||+||
T Consensus 446 ~id~~gil~v~a~~~~~g~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 446 DIDANGIVHVRAKDLGTNKEQSITIKSS-SGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp EECTTSCEEEEEEETTTCCEEEEEECSS-CSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred EEcCCceEEEEEEEcCCCcEEEEEEEec-CCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999988 889999999999999999999999999999999987
No 6
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=100.00 E-value=2.3e-63 Score=536.94 Aligned_cols=380 Identities=70% Similarity=1.082 Sum_probs=361.5
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
+.+.+||||||||||++|++.+|.++++.++.|++++||+|+|.++.+++|..|..+...+|.++++++|+++|++++++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~ 100 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDA 100 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred ccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 193 (667)
.++...+.+||.+...++.+.+.+.+ .|....++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 101 ~~~~~~~~~p~~~~~~~g~~~~~v~~-~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 101 TVQSDMKHWPFRVVSEGGKPKVQVEY-KGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHTTCSSEEEEETTEEEEEEEE-TTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCceEEccCCceEEEEEe-CCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 99999999999999888999999988 77778899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccCC---CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~---~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
|++.||++++.+++||+|||++|+..... .+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|+
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999999887652 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (667)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~ 350 (667)
+++.+.|+++++.++..+++.+.+|+.+||++|+.||......+.++.+.++.++.+.++|++|+++++++++++.+.|.
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~ 339 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVE 339 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcC
Q 005955 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~ 414 (667)
++|+.+++...+++.|+|+||+|++|+|++.|++.|++.++....||++|||+|||++|+.+++
T Consensus 340 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 340 KALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998888989999999999999999998875
No 7
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=100.00 E-value=2.6e-62 Score=527.33 Aligned_cols=379 Identities=70% Similarity=1.104 Sum_probs=362.4
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
++..+||||||||||++|++.+|.++++.++.|++++||+|+|.++++++|..|..+...+|.++++++|+++|++++++
T Consensus 16 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 95 (394)
T 3qfu_A 16 NYGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDR 95 (394)
T ss_dssp CCCSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEECSSCEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCH
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEeCCcEEecHHHHHhhHhCcccCHHHHHHHhCCCCCcH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 193 (667)
.++...+.+||.++..++.+.+.+.+ .|+...++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ei~a~~l~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~ 174 (394)
T 3qfu_A 96 SVQKDIKHLPFNVVNKDGKPAVEVSV-KGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKD 174 (394)
T ss_dssp HHHHHHTTCSSEEEEETTEEEEEEES-SSSEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEcCCCceEEEEEe-CCCceEEcHHHHHHHHHHHHHHHHHHhcCCCcceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999888899998887 77778899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHH
Q 005955 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (667)
Q Consensus 194 Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 273 (667)
|++.||++++.+++||+|||++|+......+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|.+++
T Consensus 175 a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l 254 (394)
T 3qfu_A 175 AGTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQL 254 (394)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred HHHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999887766688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l 353 (667)
.+.|.++++.++..+++.+.+|+.+||++|+.||......+.++.+.++.++...++|++|+++++++++++.+.|.++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l 334 (394)
T 3qfu_A 255 IKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVL 334 (394)
T ss_dssp HHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCCcEEEEEEeccCCceeEEEEEHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred HHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
+.+++...+++.|+|+||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.++
T Consensus 335 ~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ls 394 (394)
T 3qfu_A 335 QDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394 (394)
T ss_dssp HHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 999999899999999999999999999999999888898999999999999999998764
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=100.00 E-value=7.3e-61 Score=517.90 Aligned_cols=378 Identities=30% Similarity=0.514 Sum_probs=342.6
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
+.+||||||||||++|++.+|.++++.|+.|.+++||+|+|.++.+++|..|..+...+|.++++++|+++|+.++++.+
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~ 92 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDP 92 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred HHhhccCCeEEEccCCcceEEEEEeC---CceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 116 QRDMKLAPYKIVNRDGKPYIQVQIRD---GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
... ..++.+.+.+|...+.+.... +..+.++|+++++++|++++++++.+++.++.++|||||++|++.||++++
T Consensus 93 ~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 170 (409)
T 4gni_A 93 THN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALI 170 (409)
T ss_dssp GGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHH
T ss_pred hhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 433 344444566777767665411 355789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhccc--CCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 270 (667)
+|++.||++++.+++||+|||++|+... ...+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|+
T Consensus 171 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~ 250 (409)
T 4gni_A 171 AAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLI 250 (409)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHH
Confidence 9999999999999999999999998875 23578899999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHhcC--CCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHH
Q 005955 271 EYFIKLIKKKHG--KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (667)
Q Consensus 271 ~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~ 348 (667)
+++.+.|..+++ .+...+++.+.+|+.+||++|+.||......+.++.+.++.++...|||++|+++++|+++++..+
T Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 330 (409)
T 4gni_A 251 DHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNRL 330 (409)
T ss_dssp HHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHHH
Confidence 999999999988 788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCC-CC------CCCCCchhHHHhHHHHhhhhhcCC
Q 005955 349 VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-EP------NKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 349 i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~-~v------~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
|+++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.. ++ ....||++|||+|||++|+....+
T Consensus 331 i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 331 VESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999543 23 578899999999999999876543
No 9
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=100.00 E-value=2.5e-59 Score=501.78 Aligned_cols=373 Identities=54% Similarity=0.910 Sum_probs=338.2
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecC-CceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCH
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (667)
|+.+||||||||||++|++++|.++++.|++|.+++||+|+|.+ ++++||..|..+...+|.++++++|++||+.++++
T Consensus 1 m~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 80 (383)
T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (383)
T ss_dssp --CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSH
T ss_pred CCcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcH
Confidence 34689999999999999999999999999999999999999964 58899999999999999999999999999999999
Q ss_pred HHHHhhccCCeEEEc-cCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 005955 114 EVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (667)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~ 192 (667)
.++...+.+||.++. .++...+.+ +| ..++|+++++++|+++++.++.+++.++.++|||||++|++.||++++
T Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~~~---~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~ 155 (383)
T 1dkg_D 81 EVQRDVSIMPFKIIAADNGDAWVEV---KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATK 155 (383)
T ss_dssp HHHHHTTTCSSEEEECSSSBEEEEE---TT--EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCcEEEEE---CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 898888889999874 566555543 56 578999999999999999999999888899999999999999999999
Q ss_pred HHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEe----CCeEEEEEecCCCCCcchHHHHH
Q 005955 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 193 ~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~id~~ 268 (667)
+|++.||++++.+++||+|||++|+......+..++|||+||||||+++++.. ++.+++++..++..+||.+||+.
T Consensus 156 ~a~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~ 235 (383)
T 1dkg_D 156 DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSR 235 (383)
T ss_dssp HHHHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHH
T ss_pred HHHHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999988754357889999999999999999998 57788888888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccC---C-cceEEEeeHHHHHHHHHHHHHH
Q 005955 269 VMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNNDLFRK 344 (667)
Q Consensus 269 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~l~~~~~~~ 344 (667)
|++++.+++.++++.++..+++.+.+|+..||++|+.|+......+.++.+.+ | .++.+.|+|++|+++++|++++
T Consensus 236 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~ 315 (383)
T 1dkg_D 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNR 315 (383)
T ss_dssp HHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999998888888776543 2 4567799999999999999999
Q ss_pred HHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 345 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
+.+.|.++|+++++.+.+++.|+|+||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.++
T Consensus 316 i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 316 SIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 999999999999988889999999999999999999999999 67788899999999999999998763
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=2.7e-40 Score=348.61 Aligned_cols=310 Identities=26% Similarity=0.365 Sum_probs=236.1
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC--c-eeecHHHHHhhhhCCchhHHHHHHHhCCCCCC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS--E-RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (667)
+.+|||||||+||++++..++ .++ .+||+|+|.++ + .++|++|+.....+|.++..
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred CceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE------------
Confidence 468999999999999875443 232 26999999865 3 47999997766666654320
Q ss_pred HHHHHhhccCCeEEEccCCcceEEEEEeCCceeee-CHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHH
Q 005955 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVF-SPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (667)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~-~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l 191 (667)
..|++ +|....+ .+++++++++++++.. ..++ ...+|||||++|++.||+++
T Consensus 62 --------~~p~~---------------~g~i~~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~ 114 (344)
T 1jce_A 62 --------IRPMR---------------DGVIADYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAI 114 (344)
T ss_dssp --------ECCEE---------------TTEESSHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHH
T ss_pred --------EecCC---------------CCeeCChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHH
Confidence 12221 3321112 2445555555444331 1133 47899999999999999999
Q ss_pred HHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHH
Q 005955 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (667)
Q Consensus 192 ~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~ 271 (667)
++|++.||++++.+++||+|||++|+.... .+..++|||+||||||++++...... ..++..+||.+||+.|.+
T Consensus 115 ~~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~~~-----~~~~~~lGG~~id~~l~~ 188 (344)
T 1jce_A 115 LDAGLEAGASKVFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGSIV-----TWESIRIAGDEMDEAIVQ 188 (344)
T ss_dssp HHHHHHTTCSEEEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTEEE-----EEEEESCSHHHHHHHHHH
T ss_pred HHHHHHcCCCeEeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCCEE-----eeCCCCccChhHHHHHHH
Confidence 999999999999999999999999987654 36789999999999999999864321 235578999999999999
Q ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcc------eEEeee--cccCCcceEEEeeHHHHHHHHHHHHH
Q 005955 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ------VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFR 343 (667)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~--~~~~~~~~~~~itr~~~e~l~~~~~~ 343 (667)
++.+++ +.++. ...||++|+.|+.... ..+.++ .+.++.+..+.|+|++|+++++|.++
T Consensus 189 ~l~~~~----~~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 255 (344)
T 1jce_A 189 YVRETY----RVAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 255 (344)
T ss_dssp HHHHHH----CEECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHH
T ss_pred HHHHHh----CcccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHH
Confidence 987654 33222 3789999999987642 234443 34566677899999999999999999
Q ss_pred HHHHHHHHHHHHcCCC--ccCc-ceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 344 KTMGPVKKAMEDAGLE--KNQI-DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 344 ~i~~~i~~~l~~~~~~--~~~i-~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
++.+.|.++|+.++.. ...+ +.|+|+||+|++|++++.|++.| +.++....||+++||+||+++|+.++
T Consensus 256 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 256 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 9999999999986532 2234 68999999999999999999999 66777788999999999999998654
No 11
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=100.00 E-value=5.9e-38 Score=303.35 Aligned_cols=215 Identities=48% Similarity=0.760 Sum_probs=206.0
Q ss_pred EEEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCC
Q 005955 424 LLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGT 503 (667)
Q Consensus 424 ~~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~ 503 (667)
++.|++|+++||++.+|.|.+|||||+++|++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.|+||+|.|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHH
Q 005955 504 PQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKN 583 (667)
Q Consensus 504 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~ 583 (667)
++|+|+|.+|.||+|+|++.++.+|+...++|+++ ..||++++++|+++++++..+|+..+++.+++|+||+|+|.+++
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~-~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~ 160 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS-SGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 160 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT-CSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeecc-ccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886 67999999999999999999999999999999999999999999
Q ss_pred hhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 005955 584 QINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ 645 (667)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e 645 (667)
.|.+ +.+.+++++++.|...++++++||+++ +.++|++++++|++.+.||..|+++
T Consensus 161 ~l~~---~~~~l~~~~k~~i~~~l~~~~~~L~~~---~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 161 QVEE---AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHH---HGGGSCHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHH---hhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9976 778999999999999999999999987 7999999999999999999999876
No 12
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=100.00 E-value=1.5e-35 Score=289.72 Aligned_cols=214 Identities=36% Similarity=0.598 Sum_probs=205.0
Q ss_pred eeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCCeE
Q 005955 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQI 506 (667)
Q Consensus 427 d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~i 506 (667)
|++|+++||++.+|.+.+||+||+++|++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|+|+||.|.|.++|
T Consensus 2 Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~I 81 (227)
T 1u00_A 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHI 81 (227)
T ss_dssp CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSCE
T ss_pred CcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhc
Q 005955 507 EVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQIN 586 (667)
Q Consensus 507 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~ 586 (667)
+|+|.+|.||+|+|++.+..+|+...++|+.. .+|++++++++.++++++..+|+..+++.+++|+||+|+|.+++.|.
T Consensus 82 ~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~-~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 82 RVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEECTTCCEEEEEEETTTCCEEEEEECCC-SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCcEEEEeecccccccceEEEEec-cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887 66999999999999999999999999999999999999999999997
Q ss_pred chhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005955 587 DKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRS 647 (667)
Q Consensus 587 ~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~ 647 (667)
+ +.+++++++++.+...++++++||+++ +.++|++++++|++++.||..|++.++
T Consensus 161 ~---~~~~~~~~~k~~i~~~l~~~~~wl~~~---d~~~~~~~~~~L~~~~~~i~~r~~~~~ 215 (227)
T 1u00_A 161 A---DAALLSAAERQVIDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 215 (227)
T ss_dssp H---HGGGSCHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 678899999999999999999999965 689999999999999999999987655
No 13
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=245.31 Aligned_cols=166 Identities=54% Similarity=0.882 Sum_probs=155.1
Q ss_pred ccceEEEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCC
Q 005955 420 TKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPA 499 (667)
Q Consensus 420 ~~~~~~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~ 499 (667)
...+.+.|++|+++||++.+|.+.+|||||+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.|+||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHHHHHH
Q 005955 500 PRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYVY 579 (667)
Q Consensus 500 ~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~ 579 (667)
|.|.++|+|+|++|.||+|+|++.++.+|++.+++|+++ ..|+++++++++++++++.++|++.+++.++||+||+|+|
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~-~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy 175 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSS-GGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIH 175 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCC-CCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecC-ccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 005955 580 NMKNQIN 586 (667)
Q Consensus 580 ~~~~~l~ 586 (667)
.+|+.|+
T Consensus 176 ~~~~~l~ 182 (182)
T 3n8e_A 176 DTETKME 182 (182)
T ss_dssp CCSCCCC
T ss_pred HHHHhhC
Confidence 9997763
No 14
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=99.96 E-value=1.8e-28 Score=223.22 Aligned_cols=151 Identities=72% Similarity=1.051 Sum_probs=146.5
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|+++|+++.+|.|.++|+||+++|++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+||.|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHH
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLE 575 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE 575 (667)
+|+|+|++|.||+|+|++.+..+|+...++|.++...|++++++++++++++|..+|+..+++.++||+||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987899999999999999999999999999999999986
No 15
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=99.96 E-value=1.3e-28 Score=223.55 Aligned_cols=151 Identities=68% Similarity=1.035 Sum_probs=142.3
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|+++|+++.+|.|.++|+||+++|++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+||.|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHH
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLE 575 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE 575 (667)
+|+|+|++|.||+|+|++.++.+|+..+++|+++...|++++++++.++++++..+|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987789999999999999999999999999999999986
No 16
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=99.96 E-value=2.1e-28 Score=221.90 Aligned_cols=150 Identities=59% Similarity=0.940 Sum_probs=144.8
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|+++|+++.+|.|.++|+||+++|++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+||.|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHH
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLE 575 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE 575 (667)
+|+|+|++|.||+|+|++.++.+|+...++|+++ ..|++++++++.++++++.++|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~-~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSS-GGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS-SSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecC-CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988 899999999999999999999999999999999986
No 17
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.94 E-value=1.5e-27 Score=250.07 Aligned_cols=227 Identities=16% Similarity=0.130 Sum_probs=165.6
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhcCCCCcEE--EEeCCCCCHHHHHHHHHHHHHc--------C------CceeeeecchH
Q 005955 147 FSPEEISAMILTKMKETAEAFLGKKIKDAV--VTVPAYFNDAQRQATKDAGIIA--------G------LNVARIINEPT 210 (667)
Q Consensus 147 ~~~~ev~~~~L~~l~~~a~~~~~~~~~~~v--iTVPa~~~~~qr~~l~~Aa~~A--------G------l~~~~li~Ep~ 210 (667)
+.++....+++..|+..++...+.+ .++| ++||++|++.||+++++++..+ | +..+.+++||+
T Consensus 95 ~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~ 173 (346)
T 2fsj_A 95 LASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGV 173 (346)
T ss_dssp TTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTH
T ss_pred ccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHH
Confidence 3445666666666665542222223 5699 9999999999999999997765 4 35588999999
Q ss_pred HHHHHhhccc--CCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCC--CCC
Q 005955 211 AAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK--DIS 286 (667)
Q Consensus 211 AaAl~y~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~--~~~ 286 (667)
|||++|.... .+....++|+|+||||||++++++.++. .+....++..+||.++++.|.+++ +++++. .+.
T Consensus 174 AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i----~~~~g~~~~i~ 248 (346)
T 2fsj_A 174 GAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKI----AKETGFVVPFD 248 (346)
T ss_dssp HHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHH----HHHHCCCCCHH
T ss_pred HHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHH----HHHhCCCcCCC
Confidence 9999882111 1134679999999999999999987776 455445677899999999988774 455555 321
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 005955 287 KDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF-EELNNDLFRKTMGPVKKAMEDAGLEKNQIDE 365 (667)
Q Consensus 287 ~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~-e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 365 (667)
...+| . ...+.+ .+. .++++++ +++++++++++.+.|++.|+++ ...++.
T Consensus 249 ---------~~~~e-------~--~~~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~ 299 (346)
T 2fsj_A 249 ---------LAQEA-------L--SHPVMF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTS 299 (346)
T ss_dssp ---------HHHHH-------T--TSCEEE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEE
T ss_pred ---------HHHHh-------c--CCeEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccE
Confidence 01222 1 112222 222 2568999 9999999999999999999875 456899
Q ss_pred EEEecCccCcHHHHHHHHhHcCCCCC-CCCCCchhHHHhHHHHhhh
Q 005955 366 IVLVGGSTRIPKVQQLLKDYFDGKEP-NKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 366 ViLvGG~sr~p~i~~~l~~~f~~~~v-~~~~~p~~avA~GAa~~aa 410 (667)
|+|+||++++ +++.+++.|+...+ ....||++|+|+|+..++.
T Consensus 300 IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 300 LIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp EEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred EEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 9999999998 99999999964322 2267999999999998764
No 18
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=99.94 E-value=1.9e-26 Score=211.41 Aligned_cols=151 Identities=66% Similarity=1.023 Sum_probs=145.3
Q ss_pred EEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCCCCCCC
Q 005955 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTP 504 (667)
Q Consensus 425 ~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~ 504 (667)
+.|++|+++|+++.+|.+.+||+||++||++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+|+.|.|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHHhhccHH
Q 005955 505 QIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLE 575 (667)
Q Consensus 505 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~a~n~LE 575 (667)
+|+|+|++|.||+|+|++.+..+|+...++|..+...|++++++++.+++++|..+|+..+++.++||+||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999998886789999999999999999999999999999999986
No 19
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.94 E-value=4.3e-27 Score=250.91 Aligned_cols=320 Identities=18% Similarity=0.200 Sum_probs=206.2
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCCCCHHH
Q 005955 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (667)
..++|||+||+++++++.+++.+.+. ..|...+|+.. .......++..+...+|+++++.
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~------------~~~g~i~d~~~~~~~ik~~~~~~------ 72 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGL------------LMEGMVAEPAALAQEIKELLLEA------ 72 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTS------------EETTEESCHHHHHHHHHHHHHHH------
T ss_pred CceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCc------------ccCCCcCCHHHHHHHHHHHHHHc------
Confidence 46899999999999999876654442 22444556521 12334567788888999988641
Q ss_pred HHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCH----------
Q 005955 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND---------- 185 (667)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~---------- 185 (667)
..+ ...-.+.-.+...+...+ . ...++++++... +...++.+++.++.+++|.+|..=..
T Consensus 73 --~~~-~~~v~~~i~~~~~~~~~~-~--~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~ 142 (377)
T 2ych_A 73 --RTR-KRYVVTALSNLAVILRPI-Q--VPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQ 142 (377)
T ss_dssp --TCC-CCEEEEEECGGGCEEEEE-E--EECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEE
T ss_pred --CCC-cceEEEEecCCcEEEEEE-E--CCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeE
Confidence 111 010011111111111111 1 134677886543 34467778888899999998731111
Q ss_pred --------HHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecC
Q 005955 186 --------AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNG 256 (667)
Q Consensus 186 --------~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~ 256 (667)
...+.+++|++.||+++..++.||+|||.+|+.... ..+..++|+|+||||||+++++ .+.+. ..+
T Consensus 143 v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~--~g~~~---~~~ 217 (377)
T 2ych_A 143 VMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR--GDKPL---AVR 217 (377)
T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE--TTEEE---EEE
T ss_pred EEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE--CCEEE---EEE
Confidence 123889999999999999999999999999865432 2456799999999999999997 34322 234
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHHHH
Q 005955 257 DTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEE 336 (667)
Q Consensus 257 ~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~ 336 (667)
+..+||.+||+.|.+. ++.+ ...||++|+.++.............+-......++|+++++
T Consensus 218 ~~~~GG~~i~~~i~~~--------~~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~ 278 (377)
T 2ych_A 218 VLTLSGKDFTEAIARS--------FNLD-----------LLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYD 278 (377)
T ss_dssp EESCSHHHHHHHHHHH--------TTCC-----------HHHHHHHHHHTC-------------------------CHHH
T ss_pred eeechHHHHHHHHHHH--------hCCC-----------HHHHHHHHhhcccccccccccccccccccccccCCHHHHHH
Confidence 5789999999998863 3322 36899999999764321111000011112345789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc--CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCC--------------------
Q 005955 337 LNNDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG-------------------- 394 (667)
Q Consensus 337 l~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~-------------------- 394 (667)
++++.++++...|++.|+.. +.....++.|+|+||++++|.+++.+++.| +.++...
T Consensus 279 ~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l-~~~v~~~~P~~~v~~~~~~~~~~~l~~ 357 (377)
T 2ych_A 279 AIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTL-GVNLEPVNPWEAVAVDPKRFESEQLQE 357 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHH-TSEEEECCGGGGSBCCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHh-CCCeEecCchhhcccCcccCCHHHHHh
Confidence 99999999999999999853 555668999999999999999999999999 4443221
Q ss_pred CCchhHHHhHHHHhhh
Q 005955 395 VNPDEAVAYGAAVQGG 410 (667)
Q Consensus 395 ~~p~~avA~GAa~~aa 410 (667)
.+|..++|.|+|+++.
T Consensus 358 ~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 358 IGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCC
Confidence 2455678888888764
No 20
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.94 E-value=2.5e-25 Score=226.22 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEE
Q 005955 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (667)
Q Consensus 150 ~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlV 229 (667)
.+....+++++++.++...+..+..+++|+|++|+..+|+.++.+++.+|+++..++.||+|++++|+.. ..+|
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~------~~~v 143 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN------DGIV 143 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS------SEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC------CEEE
Confidence 4566788899998888887888889999999999999999999999999999999999999999998753 2599
Q ss_pred EEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC
Q 005955 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (667)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 309 (667)
+|+|||||+++++. ++... ......+||.+||+.+.+++. .+ ...++++|+.++
T Consensus 144 iDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~k~~~~-- 197 (272)
T 3h1q_A 144 VDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETIKKDFS-- 197 (272)
T ss_dssp EEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHHHHSST--
T ss_pred EEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC--
Confidence 99999999999987 44322 346688999999999988753 11 267889998875
Q ss_pred cceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCC
Q 005955 310 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (667)
Q Consensus 310 ~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~ 389 (667)
+++++++++.+.++++...+.+.++..+ +++.|+|+||++++|++++.+++.| +.
T Consensus 198 --------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l-~~ 252 (272)
T 3h1q_A 198 --------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL-GK 252 (272)
T ss_dssp --------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-SS
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-CC
Confidence 5889999999999999999999988753 4789999999999999999999999 78
Q ss_pred CCCCCCCchhHHHhHHHHhh
Q 005955 390 EPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 390 ~v~~~~~p~~avA~GAa~~a 409 (667)
++..+.+|++++|+|||++|
T Consensus 253 ~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 253 EVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp CCBCCSSGGGHHHHHHHTTC
T ss_pred CccccCChHHHHHHHHHhcC
Confidence 88888999999999999875
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.92 E-value=3.1e-24 Score=229.68 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHH
Q 005955 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (667)
Q Consensus 186 ~qr~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 265 (667)
...+.+.+|++.|||++..++.||.|||++|..... +...++|+|+||||||+++++ ++.+.. .+...+||++|
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~-~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~i 241 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE-KDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHV 241 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH-HHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc-ccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHH
Confidence 456788999999999999999999999998854332 356799999999999999987 454433 33568999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC-----cceEEeeecccCCcceEEEeeHHHHHHHHHH
Q 005955 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----HQVRVEIESLFDGIDFSEPLTRARFEELNND 340 (667)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~ 340 (667)
|+.|+..+. . ...+||++|+.++.. ....+.++.... .....++|+++.++++|
T Consensus 242 t~dIa~~l~--------~-----------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~--~~~~~is~~~l~~ii~p 300 (419)
T 4a2a_A 242 IKDVSAVLD--------T-----------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG--NTIKTTTAKKLSVIIHA 300 (419)
T ss_dssp HHHHHHHHT--------C-----------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS--CSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHC--------C-----------CHHHHHHHHHHhccCcccCCCCceEEEeecCC--ccceEEcHHHHHHHHHH
Confidence 999987531 1 137899999999753 345666665432 45678999999999999
Q ss_pred HHHHHHHHHHHHHHHcCC------CccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCC-----------------CCc
Q 005955 341 LFRKTMGPVKKAMEDAGL------EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG-----------------VNP 397 (667)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~-----------------~~p 397 (667)
.++++.+.|++.|+.++. ....++.|+|+||+|++|.+++.+++.| +.++... .+|
T Consensus 301 ~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~-g~~vri~~~~~~~p~~~~~~~~~~~~P 379 (419)
T 4a2a_A 301 RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDP 379 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHH-TSCEEECCGGGSSSCCCBTCHHHHTCG
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHH-CCCeEEEecCCCCchhccCcccccCCc
Confidence 999999999999999987 3456899999999999999999999999 5544211 389
Q ss_pred hhHHHhHHHHhhhh
Q 005955 398 DEAVAYGAAVQGGI 411 (667)
Q Consensus 398 ~~avA~GAa~~aa~ 411 (667)
..++|.|.+++++.
T Consensus 380 ~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 380 SFAAAFGNVFAVSE 393 (419)
T ss_dssp GGHHHHHTTCC---
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999998864
No 22
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.92 E-value=1.6e-24 Score=234.05 Aligned_cols=225 Identities=17% Similarity=0.123 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHH-hh---cccCCCceEEEEEEcCCceeEEEEEEEeC
Q 005955 172 IKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIA-YG---LDKKGGEKNILVFDLGGGTFDVSILTIDN 246 (667)
Q Consensus 172 ~~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~-y~---~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 246 (667)
...+|||+|++|+..+|+++.+++ +.+|++.+.+++||+||+++ |. .... .. +.+|+|+|+||||++++. +
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~-~~-~glVvDiG~gtt~v~~v~--~ 182 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER-TL-TGTVIDSGDGVTHVIPVA--E 182 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC-CC-CEEEEEESSSCEEEEEEE--T
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC-CC-eEEEEEcCCCceEEEEeE--C
Confidence 457999999999999999999999 88999999999999999987 42 2112 12 679999999999999986 3
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc----------------
Q 005955 247 GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH---------------- 310 (667)
Q Consensus 247 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------- 310 (667)
+. .+........+||.++|+.|.+++.+++ +...... -...+|++|+.++...
T Consensus 183 G~-~~~~~~~~~~lGG~~lt~~l~~~l~~~~---~~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~ 251 (418)
T 1k8k_A 183 GY-VIGSCIKHIPIAGRDITYFIQQLLRDRE---VGIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSK 251 (418)
T ss_dssp TE-ECGGGCEEESCSHHHHHHHHHHHHHTTC---CCCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGG
T ss_pred CE-EcccceEEEeCcHHHHHHHHHHHHHhcC---CCCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhcccccc
Confidence 43 2222235568999999999999876432 1111111 1256788888876431
Q ss_pred -ceEEeeecccCCcceEEEeeHHHH---HHHHHHHH------HHHHHHHHHHHHHcC--CCccCcceEEEecCccCcHHH
Q 005955 311 -QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF------RKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKV 378 (667)
Q Consensus 311 -~~~i~i~~~~~~~~~~~~itr~~~---e~l~~~~~------~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~sr~p~i 378 (667)
...+.++....+.+..+.+++++| |.++.|.+ ..+.+.|.++|..+. +....++.|+|+||+|++|.+
T Consensus 252 ~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~ 331 (418)
T 1k8k_A 252 WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDF 331 (418)
T ss_dssp TCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTH
T ss_pred cceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccH
Confidence 134666655555667889999998 55555542 468888999998864 344567889999999999999
Q ss_pred HHHHHhHcCC-----------------------CCCCCCCCchhHHHhHHHHhhhh
Q 005955 379 QQLLKDYFDG-----------------------KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 379 ~~~l~~~f~~-----------------------~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+++|++.+.. .++..+.+|..++.+||+++|..
T Consensus 332 ~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 332 GRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 9998875521 12333457789999999999864
No 23
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.91 E-value=3.2e-24 Score=227.98 Aligned_cols=298 Identities=15% Similarity=0.131 Sum_probs=194.7
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEec----------CCceeecHHHHHhhhhCCchhHHHHHHHh
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT----------DSERLIGEAAKNQAAVNPDRTIFDVKRLI 106 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~----------~~~~~~G~~A~~~~~~~~~~~~~~~k~ll 106 (667)
..|+||+||+++++++..++.|.++ +||+++.. ....++|++|.... ..
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~~--------- 64 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GI--------- 64 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----TS---------
T ss_pred ceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----cc---------
Confidence 5689999999999999865544322 25555543 23567888775421 00
Q ss_pred CCCCCCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCCC
Q 005955 107 GRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKK--IKDAVVTVPAYFN 184 (667)
Q Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~~--~~~~viTVPa~~~ 184 (667)
..-..|+. +|.... -+....+++++.. +.++.. ...++||+|++++
T Consensus 65 -----------~~~~~Pi~---------------~G~i~d---~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~ 112 (375)
T 2fxu_A 65 -----------LTLKYPIE---------------HGIITN---WDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNP 112 (375)
T ss_dssp -----------EEEECSEE---------------TTEECC---HHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCC
T ss_pred -----------cceecccc---------------CCcccC---HHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCc
Confidence 00011211 552222 2334455555542 223322 3469999999999
Q ss_pred HHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcch
Q 005955 185 DAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (667)
Q Consensus 185 ~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 263 (667)
..+|+++.++ .+.+|++.+.+++||+|||++++. ...+|+|+|+||||++.+. ++. .+........+||.
T Consensus 113 ~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~------~~~lVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~~GG~ 183 (375)
T 2fxu_A 113 KANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVTHNVPIY--EGY-ALPHAIMRLDLAGR 183 (375)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC------SSEEEEEECSSCEEEEEEE--TTE-ECGGGCEEESCCHH
T ss_pred HHHHHHHHHHHHHhcCcceEEEccchheeeeecCC------CeEEEEEcCCCceEEeEeE--CCE-EeccceEEeccCHH
Confidence 9999988876 477899999999999999999974 3579999999999987764 453 22222345689999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcC----------------CcceEEeeecccCCcceEE
Q 005955 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS----------------QHQVRVEIESLFDGIDFSE 327 (667)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----------------~~~~~i~i~~~~~~~~~~~ 327 (667)
++|+.|.+++..+ .+ .+... .-...+|++|+.++. .....+.++ ++ ..+
T Consensus 184 ~lt~~l~~~l~~~---~~--~~~~~-----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---dg--~~i 248 (375)
T 2fxu_A 184 DLTDYLMKILTER---GY--SFVTT-----AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---DG--QVI 248 (375)
T ss_dssp HHHHHHHHHHHHH---TC--CCCSH-----HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---TS--CEE
T ss_pred HHHHHHHHHHHhc---CC--CCCcH-----HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---CC--CEE
Confidence 9999999997654 12 22110 011345556665532 222333333 22 356
Q ss_pred EeeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCccCcceEEEecCccCcHHHHHHHHhHcCC-------CC
Q 005955 328 PLTRARF---EELNNDL-----FRKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KE 390 (667)
Q Consensus 328 ~itr~~~---e~l~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~-------~~ 390 (667)
.+++++| |.+++|. ...+.+.|.+.|..+. +....++.|+|+||+|++|.++++|++.+.. .+
T Consensus 249 ~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~ 328 (375)
T 2fxu_A 249 TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIK 328 (375)
T ss_dssp EESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCC
T ss_pred EEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEE
Confidence 7888877 3344443 2457777888887642 2234468899999999999999999987731 34
Q ss_pred CCCCCCchhHHHhHHHHhhhh
Q 005955 391 PNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 391 v~~~~~p~~avA~GAa~~aa~ 411 (667)
+..+.+|..++++||+++|..
T Consensus 329 v~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 329 IIAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp EECCTTTTSHHHHHHHHHHHC
T ss_pred EEcCCCCCccEEcchHHhhCc
Confidence 445679999999999999973
No 24
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.85 E-value=2.2e-22 Score=209.18 Aligned_cols=227 Identities=17% Similarity=0.187 Sum_probs=147.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCC-CCHH--HH--HHHHHH------------HHHcCCceeeeec
Q 005955 145 KVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAY-FNDA--QR--QATKDA------------GIIAGLNVARIIN 207 (667)
Q Consensus 145 ~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~viTVPa~-~~~~--qr--~~l~~A------------a~~AGl~~~~li~ 207 (667)
..+++..+++.+ ..|+. +.. .+.+ ..+|+++|.. |... |+ +++.+- ++.+++..+.+++
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 346777766543 44432 211 1222 3689999977 6531 21 112111 2334556788999
Q ss_pred chHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 005955 208 EPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISK 287 (667)
Q Consensus 208 Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~ 287 (667)
||.||+++|..... ++..++|+|+||||+|+++++ ++...+....++..+||.+||+.|.+++.+ + +.++.
T Consensus 148 e~~aa~~~~~~~~~-~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~----~-~~~i~- 218 (320)
T 2zgy_A 148 ESIPAGYEVLQELD-ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSL----A-RTKGS- 218 (320)
T ss_dssp SSHHHHHHHHHHSC-TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTC----C-SBGGG-
T ss_pred CcHHHHHhhhcccc-CCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHH----c-CCCCC-
Confidence 99999998864322 467899999999999999998 444445555677889999999999988653 2 32221
Q ss_pred CHHHHHHHHHHHHHH-HHHh-cCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 005955 288 DKRAIGKLRREAERA-KRAL-SSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDE 365 (667)
Q Consensus 288 ~~~~~~~L~~~~e~~-K~~L-s~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 365 (667)
. ..+|++ |..- .......+.. .-+.+++.+++++.++++.+.|.+.+++. .+++.
T Consensus 219 -~-------~~ae~~lk~~~~~~~~~~~i~~-----------~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~ 275 (320)
T 2zgy_A 219 -S-------YLADDIIIHRKDNNYLKQRIND-----------ENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTH 275 (320)
T ss_dssp -H-------HHHHHHHHTTTCHHHHHHHSSS-----------SCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCE
T ss_pred -H-------HHHHHHHHHhhhhhcccceecC-----------chhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCe
Confidence 1 234444 3220 0000000000 01345666777777777777777777652 46899
Q ss_pred EEEecCccCcHHHHHHHHhHcCCC--CCCCCCCchhHHHhHHHHhh
Q 005955 366 IVLVGGSTRIPKVQQLLKDYFDGK--EPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 366 ViLvGG~sr~p~i~~~l~~~f~~~--~v~~~~~p~~avA~GAa~~a 409 (667)
|+|+||++++ +++.+++.|+.. ++....||++|+|+||+++|
T Consensus 276 vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 276 VMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred EEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 9999999987 999999999532 46678899999999999876
No 25
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=99.85 E-value=3.8e-21 Score=171.13 Aligned_cols=119 Identities=58% Similarity=0.944 Sum_probs=109.4
Q ss_pred ccceEEEeeccccCceeeeCCeeEEEeeCCCCcCccceeeeeeccCCCceeEEEEEecCccccccCceeeEEEeeCCCCC
Q 005955 420 TKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPA 499 (667)
Q Consensus 420 ~~~~~~~d~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~l~~~~l~~~~~~ 499 (667)
.+++.+.|++|+++|+++.++.+.++|+||+++|++++++|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEcCCceEEEEEeecCCCceeeEEEecC
Q 005955 500 PRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITND 538 (667)
Q Consensus 500 ~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~ 538 (667)
|+|.++|+|+|++|.||+|+|++.++.+|++.+++|+++
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~ 132 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 132 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECS
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecC
Confidence 999999999999999999999999999999999999876
No 26
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.76 E-value=1.7e-19 Score=192.52 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=90.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEE
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 251 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v 251 (667)
..+++|+|+.++..+|+++.+++ +.+|++.+.++.||.|||++++. ...+|+|+|+|||+++.+. ++.. +
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~------~~~lVVDiG~g~T~v~pv~--~G~~-~ 175 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL------LTGVVVDSGDGVTHICPVY--EGFS-L 175 (394)
T ss_dssp -------------------------------------------------------CCEEEECSSCEEEECEE--TTEE-C
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC------ceEEEEEcCCCceEeeeeE--CCEE-c
Confidence 46999999999999999888854 77899999999999999999875 3469999999999998775 3432 1
Q ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCc----------------ceEEe
Q 005955 252 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVE 315 (667)
Q Consensus 252 ~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~ 315 (667)
........+||.++|+.|.+++..+ .+....... ...+|.+|+.++... ...+.
T Consensus 176 ~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~ 245 (394)
T 1k8k_B 176 PHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 245 (394)
T ss_dssp STTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred ccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEE
Confidence 1112235799999999999987643 122211112 245666777664321 11222
Q ss_pred eecccCCcceEEEeeHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCC--CccCcceEEEecCccCcHHHHHHHHhH
Q 005955 316 IESLFDGIDFSEPLTRARFE---ELNNDL-----FRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDY 385 (667)
Q Consensus 316 i~~~~~~~~~~~~itr~~~e---~l~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~sr~p~i~~~l~~~ 385 (667)
++ ++ ..+.+++++|. -+++|. ...+.+.|.+.|..+.. ...-++.|+|+||+|.+|.+.++|++.
T Consensus 246 lp---dg--~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~e 320 (394)
T 1k8k_B 246 LP---DG--RIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE 320 (394)
T ss_dssp CT---TS--CEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHH
T ss_pred CC---CC--CEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHH
Confidence 22 22 24667777773 334442 23467778888887632 234457899999999999999999887
Q ss_pred cCC------------------CCCCCCCCchhHHHhHHHHhhhh
Q 005955 386 FDG------------------KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 386 f~~------------------~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+.. .++..+.+|..++.+|++++|..
T Consensus 321 l~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 321 LKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp HHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 621 12333567789999999999863
No 27
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=99.74 E-value=1e-17 Score=170.18 Aligned_cols=185 Identities=17% Similarity=0.147 Sum_probs=122.0
Q ss_pred cCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 005955 198 AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLI 277 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~ 277 (667)
++......|+||+|+++++...... ...|+|+|||+++++++. .++.+......+....|+.+|+..+++++.-.+
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~~---~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~ 144 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIPE---TRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDV 144 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHSTT---CCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCG
T ss_pred HhhCCCcccchHHHHHHHHHHhCCC---CCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccCh
Confidence 5667788999999999888665433 347899999999999885 566778777888889999999888888764222
Q ss_pred HHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeec--ccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 278 KKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES--LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMED 355 (667)
Q Consensus 278 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~--~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~ 355 (667)
.... . ..+.......+.-.+ +....-....-.....++++..+.+.+.+.+......
T Consensus 145 ~~~~------------~---------~~~~a~~~~~i~~~~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~ 203 (276)
T 4ehu_A 145 SELG------------S---------ISMNSQNEVSISSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKR 203 (276)
T ss_dssp GGHH------------H---------HHTTCSSCCCCCCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhH------------H---------HHhcCCCCCCcCCccchhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 2100 0 000000000000000 0000000000001123566666666666665555444
Q ss_pred cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 356 AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 356 ~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
. ..++.|+|+||.+++|.|++.+++.| +.++..+.||++++|+|||++|...
T Consensus 204 ~----~~~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 204 I----GVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp H----CCCSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred c----ccCCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHH
Confidence 3 34678999999999999999999999 7889899999999999999999653
No 28
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.72 E-value=2.5e-17 Score=172.43 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=135.1
Q ss_pred CcEEEEeCCCCCHHHH-HHHHHHHHHcCC------------ceeeeecchHHHHHHhhcccCC-----CceEEEEEEcCC
Q 005955 173 KDAVVTVPAYFNDAQR-QATKDAGIIAGL------------NVARIINEPTAAAIAYGLDKKG-----GEKNILVFDLGG 234 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr-~~l~~Aa~~AGl------------~~~~li~Ep~AaAl~y~~~~~~-----~~~~vlVvD~Gg 234 (667)
..+++.+|..+...+| +++++++...+- ..+.+++||.||+++++..... .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3689999998887777 588888775542 4577899999999999765421 367899999999
Q ss_pred ceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEE
Q 005955 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (667)
Q Consensus 235 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 314 (667)
||||++++ .++.+. ....+...+||..+++.+.+++.+++. +..+. . ...++. .. +
T Consensus 194 gTtd~~v~--~~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g-------~~--~ 249 (355)
T 3js6_A 194 GTTIIDTY--QNMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKG-------LE--Y 249 (355)
T ss_dssp SCEEEEEE--ETTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSC-------CC---
T ss_pred CcEEEEEE--cCCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcC-------Cc--c
Confidence 99999999 344321 111234579999999999998765431 22222 1 011110 00 0
Q ss_pred eeecccCCcc--eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHH--HHHHHHhHcCCCC
Q 005955 315 EIESLFDGID--FSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK--VQQLLKDYFDGKE 390 (667)
Q Consensus 315 ~i~~~~~~~~--~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~--i~~~l~~~f~~~~ 390 (667)
. ..+.+ -.+.+ .+.+++.+++.++++.+.|++.+.+ +..++.|+|+||++.++. |.+.+++.||..
T Consensus 250 ~----~~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~- 319 (355)
T 3js6_A 250 K----QCKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA- 319 (355)
T ss_dssp ----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC-
T ss_pred c----cccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC-
Confidence 0 00000 01112 2345666777777777777776653 456799999999999998 889999999542
Q ss_pred CCCCCCchhHHHhHHHHhhhhhc
Q 005955 391 PNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 391 v~~~~~p~~avA~GAa~~aa~~s 413 (667)
.||.+|+|+|+..++..+.
T Consensus 320 ----~~p~~anA~G~~~~~~~~~ 338 (355)
T 3js6_A 320 ----DDSQFSNVRGYEKLGELLK 338 (355)
T ss_dssp ----SSGGGHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHH
Confidence 7999999999999987654
No 29
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.56 E-value=2.2e-15 Score=156.36 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=134.8
Q ss_pred CcEEEEeCCCCCH--HHHHHHHHHHHHc--------C------CceeeeecchHHHHHHhhcccCCCceEEEEEEcCCce
Q 005955 173 KDAVVTVPAYFND--AQRQATKDAGIIA--------G------LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (667)
Q Consensus 173 ~~~viTVPa~~~~--~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT 236 (667)
..+++++|..+-. .+|+.+++....- | +..+.+++||.+|.+.+. ...+...++|+|+||||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--~~~~~~~v~vvDiGggT 183 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--ENFKNKNVAVIDFGGLN 183 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--CCCTTCEEEEEEECSSC
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--hhhccCCEEEEEeCCCc
Confidence 4688999976553 4677777765521 1 123667888888887652 22256789999999999
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHH-hcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEe
Q 005955 237 FDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK-KHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVE 315 (667)
Q Consensus 237 ~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~-~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~ 315 (667)
||++++. ++.+ +....+...+||..+++.+.+++. + +++..+.. ..++++|+. .. .
T Consensus 184 td~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~----~~~~g~~i~~---------~~~e~i~~~-g~---~--- 240 (329)
T 4apw_A 184 MGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALT----DLNNGNLITN---------EQAESALNN-GY---M--- 240 (329)
T ss_dssp EEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSS----SCSSCSCTTS---------BTTTTCSSS-CS---S---
T ss_pred EEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHH----hhccCCCCCH---------HHHHHHHhc-CC---c---
Confidence 9999998 4433 222233567999999999988744 4 55554432 123333321 00 0
Q ss_pred eecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCC
Q 005955 316 IESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGV 395 (667)
Q Consensus 316 i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~ 395 (667)
..+.+. ..+..+.+++.+++.++.+.+.+++. +.++..++.|+|+||++.+ +.+.+++.|+ .++....
T Consensus 241 ----~~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v~~ 308 (329)
T 4apw_A 241 ----KKGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSIITN 308 (329)
T ss_dssp ----CEECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEECCS
T ss_pred ----ccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEecC
Confidence 001111 12346667777777777777666655 3455568999999999987 6799999994 4566788
Q ss_pred CchhHHHhHHHHhhhh
Q 005955 396 NPDEAVAYGAAVQGGI 411 (667)
Q Consensus 396 ~p~~avA~GAa~~aa~ 411 (667)
||..|+|+|+..++..
T Consensus 309 ~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 309 NSQWTTCEGLYKVAVA 324 (329)
T ss_dssp SGGGHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhh
Confidence 9999999999988754
No 30
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.49 E-value=3e-14 Score=152.37 Aligned_cols=242 Identities=18% Similarity=0.107 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCC--Cce
Q 005955 151 EISAMILTKMKETAEAFLGK--KIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG--GEK 225 (667)
Q Consensus 151 ev~~~~L~~l~~~a~~~~~~--~~~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~--~~~ 225 (667)
+....+++|+.. +.++. ....+++|.|...+...|+.+.+.+ +.+|++.+.++.+|.+|+++.+..... ...
T Consensus 103 d~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~ 179 (427)
T 3dwl_A 103 DHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179 (427)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCC
T ss_pred HHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCc
Confidence 444555555543 22332 2347999999999999999999977 789999999999999999988753211 134
Q ss_pred EEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Q 005955 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 305 (667)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 305 (667)
+-+|+|+|+|+|+++.+. ++.. +........+||+++|+.|.+++..+... .. =...++.+|+.
T Consensus 180 tglVVDiG~g~T~v~PV~--~G~~-l~~~~~rl~~gG~~lt~~L~~lL~~~~~~----~~---------~~~~~~~IKe~ 243 (427)
T 3dwl_A 180 TGTVVDSGDGVTHIIPVA--EGYV-IGSSIKTMPLAGRDVTYFVQSLLRDRNEP----DS---------SLKTAERIKEE 243 (427)
T ss_dssp CEEEEEESSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHH
T ss_pred eEEEEECCCCceEEEEEE--CCEE-ehhhheeccccHHHHHHHHHHHHHHcCCC----ch---------hHHHHHHHHHh
Confidence 579999999999999984 3321 11011124799999999999886543221 00 01456777777
Q ss_pred hcCCcce-----------EEeee--cc--cCCcceEEEeeHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC--C
Q 005955 306 LSSQHQV-----------RVEIE--SL--FDGIDFSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGL--E 359 (667)
Q Consensus 306 Ls~~~~~-----------~i~i~--~~--~~~~~~~~~itr~~~---e~l~~~~------~~~i~~~i~~~l~~~~~--~ 359 (667)
++..... ...+. .+ .++....+.+..++| |-+++|- ...+.+.|.+.|.++.. .
T Consensus 244 ~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr 323 (427)
T 3dwl_A 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVR 323 (427)
T ss_dssp HCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHH
T ss_pred cCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHH
Confidence 6532110 00000 01 223334566777765 3344442 23467777777776432 1
Q ss_pred ccCcceEEEecCccCcHHHHHHHHhHc----C---------------C--CCCCCCCCchhHHHhHHHHhhhh
Q 005955 360 KNQIDEIVLVGGSTRIPKVQQLLKDYF----D---------------G--KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 360 ~~~i~~ViLvGG~sr~p~i~~~l~~~f----~---------------~--~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+.-.+.|+|+||+|.+|.+.++|++.+ + . .++..+.++..++=.|++++|..
T Consensus 324 ~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp HHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred HHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 222467999999999999999888755 1 1 12333456778999999999863
No 31
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.8e-13 Score=147.74 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=119.0
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEecCCCCcccceEEEecCC----ceeecHHHHHhhhhCCchhHHHHHHHhCCCCCC
Q 005955 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (667)
..|+||+||.++++++..++.|..+ +||+|+.... ..++|.++.... +.
T Consensus 24 ~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~---------------- 76 (498)
T 3qb0_A 24 SAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RK---------------- 76 (498)
T ss_dssp SCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CT----------------
T ss_pred CeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cC----------------
Confidence 4689999999999998865544333 4999987532 467787532110 00
Q ss_pred HHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhcC--CCC-cEEEEeCCCCCHHHHH
Q 005955 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGK--KIK-DAVVTVPAYFNDAQRQ 189 (667)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~~--~~~-~~viTVPa~~~~~qr~ 189 (667)
...+.-.+.+|. +.--+....+++|+... .++. ... .+++|.|...+...|+
T Consensus 77 -------------------~l~l~~Pi~~Gv---I~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re 131 (498)
T 3qb0_A 77 -------------------DYELKPIIENGL---VIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRK 131 (498)
T ss_dssp -------------------TEEEEESEETTE---ESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHH
T ss_pred -------------------ceEEeccCcCCE---EccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHH
Confidence 000111122552 22234455666666542 2332 223 6999999999999999
Q ss_pred HHHHHH-HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHH
Q 005955 190 ATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (667)
Q Consensus 190 ~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 268 (667)
.+.+++ +.+|++.+.++.+|.+|++++|.. +-||+|+|+|+|+++.+. ++.. +........+||+++|+.
T Consensus 132 ~~~eilFE~f~vpav~l~~~~vlalya~G~~------tglVVDiG~g~T~vvPI~--~G~~-l~~ai~rl~vgG~~lt~~ 202 (498)
T 3qb0_A 132 KSLEVLLEGMQFEACYLAPTSTCVSFAAGRP------NCLVVDIGHDTCSVSPIV--DGMT-LSKSTRRNFIAGKFINHL 202 (498)
T ss_dssp HHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS------SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHH
T ss_pred HHHHHHHhhcCCCeEeecchHHHHHHHcCCC------eEEEEEcCCCcEEEEEEe--CCEE-ccccceeccccHHHHHHH
Confidence 999864 789999999999999999988752 249999999999999985 3321 111111247999999999
Q ss_pred HHHHHHH
Q 005955 269 VMEYFIK 275 (667)
Q Consensus 269 l~~~l~~ 275 (667)
|.+++.+
T Consensus 203 L~~lL~~ 209 (498)
T 3qb0_A 203 IKKALEP 209 (498)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 9998753
No 32
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=99.46 E-value=2.4e-13 Score=117.30 Aligned_cols=85 Identities=42% Similarity=0.807 Sum_probs=77.5
Q ss_pred hHHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005955 563 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITA 642 (667)
Q Consensus 563 ~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r 642 (667)
.+++++++||+||+|||.+++.|.+. .+.+.++++++..|...++++.+||+++.+++.++|+.++++|++++.||..|
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~-~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k 81 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDE-GLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISG 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCG-GGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch-hhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999874 48899999999999999999999999987889999999999999999999999
Q ss_pred HHhhcC
Q 005955 643 VYQRSG 648 (667)
Q Consensus 643 ~~e~~~ 648 (667)
+++.+|
T Consensus 82 ~y~~~~ 87 (113)
T 3lof_A 82 LYQGAG 87 (113)
T ss_dssp HHHC--
T ss_pred HHHhcc
Confidence 998643
No 33
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=99.28 E-value=3.3e-12 Score=111.27 Aligned_cols=89 Identities=44% Similarity=0.768 Sum_probs=74.3
Q ss_pred HHHHHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005955 564 VKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAV 643 (667)
Q Consensus 564 ~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~ 643 (667)
+++++++||+||+|||.+++.|.+. .+.+.++++++..|...++++.+||+++.+++.++|+.++++|++++.||..|+
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~-~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDE-KLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCT-TTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhch-hhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999763 377889999999999999999999987667899999999999999999999999
Q ss_pred HhhcCCCCCC
Q 005955 644 YQRSGGAPGA 653 (667)
Q Consensus 644 ~e~~~~~~~~ 653 (667)
++.+||.||+
T Consensus 92 y~~~~~~~~~ 101 (120)
T 2p32_A 92 YQSAGGAPPG 101 (120)
T ss_dssp CCC-------
T ss_pred HHhccCCCCC
Confidence 8655555543
No 34
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=99.20 E-value=1.5e-11 Score=106.26 Aligned_cols=85 Identities=47% Similarity=0.851 Sum_probs=73.3
Q ss_pred HHHhhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005955 567 KIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQR 646 (667)
Q Consensus 567 ~~~a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~ 646 (667)
++++||+||+|||.+++.|.+. .+.+.++++++..|...++++.+||+++.+++.++|+.++++|++++.||..|+++.
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~-e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~ 80 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDE-KLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS 80 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSG-GGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHhcch-hhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999742 278899999999999999999999986555678999999999999999999999976
Q ss_pred cCCCCC
Q 005955 647 SGGAPG 652 (667)
Q Consensus 647 ~~~~~~ 652 (667)
+||+||
T Consensus 81 ~~~~~~ 86 (113)
T 1ud0_A 81 AGGMPG 86 (113)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 666554
No 35
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.19 E-value=2.6e-10 Score=128.35 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCCCC-----cEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchHHHHHHhhcccC
Q 005955 149 PEEISAMILTKMKETAE-AFLGKKIK-----DAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKK 221 (667)
Q Consensus 149 ~~ev~~~~L~~l~~~a~-~~~~~~~~-----~~viTVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AaAl~y~~~~~ 221 (667)
..+.... +..|++++- +.++.... .+++|.|..++...|+.|.+. .+..|++.+.++.++.+|++++|..
T Consensus 170 ~~~~wdd-~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-- 246 (593)
T 4fo0_A 170 LTAVLAD-IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-- 246 (593)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS--
T ss_pred hhcCHHH-HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC--
Confidence 3444333 445666553 45654433 499999999999999988875 5678999999999999999988743
Q ss_pred CCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHH
Q 005955 222 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (667)
Q Consensus 222 ~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 275 (667)
+-+|||+|.+.|.++-+. +|.. +........+||.++++.|.++|..
T Consensus 247 ----tglVVDiG~~~T~v~PV~--dG~~-l~~~~~rl~~GG~~lt~~L~~lL~~ 293 (593)
T 4fo0_A 247 ----STCIVDVGDQKTSVCCVE--DGVS-HRNTRLCLAYGGSDVSRCFYWLMQR 293 (593)
T ss_dssp ----EEEEEEECSSCEEEEEEE--SSCB-CGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred ----ceEEEEeCCCceeeeeeE--CCEE-ehhheEEecccHHHHHHHHHHHHHh
Confidence 468999999999988775 2211 0001112469999999999887654
No 36
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=99.16 E-value=1.6e-10 Score=121.71 Aligned_cols=197 Identities=21% Similarity=0.191 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHc-CC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcc
Q 005955 186 AQRQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 262 (667)
Q Consensus 186 ~qr~~l~~Aa~~A-Gl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 262 (667)
.+-+.+.+|.+.+ |+ .+-. .||.||+++...... .+-.++++|+||||||++++.-....+ ......||
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~gG 439 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-TTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGAG 439 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECSH
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccch
Confidence 4467788888888 99 6666 999999998855444 477799999999999999997444332 22246899
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC----------cceEEee--ecccCC---c----
Q 005955 263 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----------HQVRVEI--ESLFDG---I---- 323 (667)
Q Consensus 263 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~~~---~---- 323 (667)
+.++..+..-|. .+ + +..||++|. .... +...+.+ +.+... .
T Consensus 440 ~~VT~DIA~~Lg--------t~--d--------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~ 500 (610)
T 2d0o_A 440 DMVTMIIARELG--------LE--D--------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVV 500 (610)
T ss_dssp HHHHHHHHHHHT--------CC--C--------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEE
T ss_pred HHHHHHHHHHhC--------CC--C--------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecc
Confidence 999998875532 11 0 278999998 5321 1223334 222110 1
Q ss_pred --ceEEEeeHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CccCcceEEEecCccCcHHHHHHHHhHcCCCCC-
Q 005955 324 --DFSEPLTRAR--FEELNNDLFRKTMGP--VKKAMEDAGL-----EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP- 391 (667)
Q Consensus 324 --~~~~~itr~~--~e~l~~~~~~~i~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v- 391 (667)
..-..| +.+ +|+ ++-+-+++.+. +..+|+..+. ...+|..|+|+||+|+++.+.++.++.|+.-++
T Consensus 501 ~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VR 578 (610)
T 2d0o_A 501 KADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLV 578 (610)
T ss_dssp CSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCE
T ss_pred cccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeE
Confidence 122355 566 777 55555554443 3344555432 235679999999999999999999999943133
Q ss_pred ------CCCCCchhHHHhHHHHhhhh
Q 005955 392 ------NKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 392 ------~~~~~p~~avA~GAa~~aa~ 411 (667)
....+|..|+|.|.+++.+.
T Consensus 579 iGrP~~~gv~gP~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 579 AGRGNIRGSEGPRNAVATGLILSWHK 604 (610)
T ss_dssp EEECCGGGTSTTSCHHHHHHHHHHHH
T ss_pred EecCCccccCCCcHHHHHHHHHHHhh
Confidence 22458999999999987653
No 37
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=99.15 E-value=2.3e-10 Score=120.98 Aligned_cols=194 Identities=19% Similarity=0.151 Sum_probs=130.5
Q ss_pred HHHHHHHHHHc-CC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchH
Q 005955 188 RQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (667)
Q Consensus 188 r~~l~~Aa~~A-Gl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 264 (667)
-+.+.+|.+.+ |+ .+-. .||.||+++...... .+..++++|+||||||++++.-....+ ......||+.
T Consensus 372 m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~~ 443 (607)
T 1nbw_A 372 MQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-CAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGNM 443 (607)
T ss_dssp SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHHH
T ss_pred HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchHH
Confidence 45677788888 99 5555 999999998855444 477799999999999999997554432 2224689999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCC----------cceEEee--ecccCC---c------
Q 005955 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----------HQVRVEI--ESLFDG---I------ 323 (667)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~~~---~------ 323 (667)
++..+..-|. .+ + +..||++|. .... +...+.+ +.+... .
T Consensus 444 VT~DIA~~Lg--------~~--d--------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~~ 504 (607)
T 1nbw_A 444 VSLLIKTELG--------LE--D--------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKE 504 (607)
T ss_dssp HHHHHHHHHT--------CS--C--------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEET
T ss_pred HHHHHHHHhC--------CC--C--------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecccc
Confidence 9998875532 11 0 278999998 5321 1223334 222111 1
Q ss_pred ceEEEeeHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCCc-----cCcceEEEecCccCcHHHHHHHHhHcCCCCC---
Q 005955 324 DFSEPLTRAR--FEELNNDLFRKTMGP--VKKAMEDAGLEK-----NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP--- 391 (667)
Q Consensus 324 ~~~~~itr~~--~e~l~~~~~~~i~~~--i~~~l~~~~~~~-----~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v--- 391 (667)
..-..| +.+ +|+ ++-+-+++.+. +..+|+..+... .+|..|+|+||+|+++.+.++.++.|+.-++
T Consensus 505 ~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiG 582 (607)
T 1nbw_A 505 GELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAG 582 (607)
T ss_dssp TEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEE
T ss_pred cceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence 112245 556 777 55555554443 455688776533 3568999999999999999999999943132
Q ss_pred ----CCCCCchhHHHhHHHHhhh
Q 005955 392 ----NKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 392 ----~~~~~p~~avA~GAa~~aa 410 (667)
....+|..|+|.|.+++.+
T Consensus 583 rP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 583 QGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp ECCGGGTSCSCCHHHHHHHHHHH
T ss_pred cCCccccCCchHHHHHHHHHhhh
Confidence 2245899999999998753
No 38
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=98.90 E-value=9.3e-08 Score=95.89 Aligned_cols=171 Identities=18% Similarity=0.243 Sum_probs=98.3
Q ss_pred eeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcC
Q 005955 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 282 (667)
Q Consensus 203 ~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 282 (667)
..+++|++|.+.+....... .+ .++|+||+++.+..+ .++.+........+..|+-. +.+++...+ +
T Consensus 77 ~~~v~Ei~ah~~ga~~~~~~-~~--~vidiGGqd~k~i~~--~~g~v~~~~mn~~ca~GtG~----~le~~a~~l----g 143 (270)
T 1hux_A 77 DKQMSELSCHAMGASFIWPN-VH--TVIDIGGQDVKVIHV--ENGTMTNFQMNDKCAAGTGR----FLDVMANIL----E 143 (270)
T ss_dssp SEEECHHHHHHHHHHHHCTT-CC--EEEEEETTEEEEEEE--ETTEEEEEEEESSCCTTSHH----HHHHHHHHH----T
T ss_pred CCCcccHHHHHHHHHHhCCC-CC--EEEEECCCceEEEEE--eCCceeeeccccccchhhHH----HHHHHHHHh----C
Confidence 46799999998654332222 12 589999999888777 46654333333333333332 344444333 3
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceEEEeeHHHH----------HHHHHHHHHHHHHHHHHH
Q 005955 283 KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF----------EELNNDLFRKTMGPVKKA 352 (667)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~----------e~l~~~~~~~i~~~i~~~ 352 (667)
.++.. .++.... ... .+.+ .... ..+.+.++ +++++.+++.+...+.+.
T Consensus 144 ~~~~e-----------l~~la~~--~~~--p~~~----~~~c--~vfa~s~v~~l~~~g~~~~di~~av~e~Va~~i~~~ 202 (270)
T 1hux_A 144 VKVSD-----------LAELGAK--STK--RVAI----SSTC--TVFAESEVISQLSKGTDKIDIIAGIHRSVASRVIGL 202 (270)
T ss_dssp CCTTT-----------HHHHHTT--CCS--CCCC----CCCS--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-----------HHHHHhh--CCC--CCCc----cccc--chhHhHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33311 1111100 000 0000 0000 01112222 455555555555555555
Q ss_pred HHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 353 l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
++..+. .+.|+++||.+++|.+++.+++.+ +.++..+.+++.+.|+|||++|...
T Consensus 203 ~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 203 ANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 544221 367999999999999999999999 7888778788889999999998754
No 39
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=98.45 E-value=1e-06 Score=96.62 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=56.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhh
Q 005955 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~a 409 (667)
+|.++ ++.+++.+.-.++..++...-....++.|.++||+++++.+.+++.+.| +.+|... .+.++.|+|||+.|
T Consensus 364 ~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA 438 (504)
T 3ll3_A 364 QKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLA 438 (504)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHH
Confidence 45544 4455555544444444332111235889999999999999999999999 7887654 45679999999999
Q ss_pred hhhcCC
Q 005955 410 GILSGE 415 (667)
Q Consensus 410 a~~s~~ 415 (667)
+.-.+.
T Consensus 439 ~~a~G~ 444 (504)
T 3ll3_A 439 RQALGL 444 (504)
T ss_dssp HHHTTS
T ss_pred HHHcCc
Confidence 876554
No 40
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=98.34 E-value=2e-06 Score=94.43 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCC-CCCCCchhHHHhHHHHhhhhhcC
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP-NKGVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v-~~~~~p~~avA~GAa~~aa~~s~ 414 (667)
.+++.+++.+.-.++..++...- .. ++.|.++||+++++.+.+++.+.+ +.+| .. ..+.++.|+|||+.|+.-.+
T Consensus 378 ~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 378 QILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 44555666665555555555433 34 889999999999999999999999 7887 54 45889999999999987665
Q ss_pred C
Q 005955 415 E 415 (667)
Q Consensus 415 ~ 415 (667)
.
T Consensus 454 ~ 454 (511)
T 3hz6_A 454 W 454 (511)
T ss_dssp S
T ss_pred C
Confidence 4
No 41
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=98.30 E-value=1.2e-05 Score=88.27 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=106.1
Q ss_pred HHHHHHcCC----ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE---eCCeEEEEEe--cCCCC-Cc
Q 005955 192 KDAGIIAGL----NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI---DNGVFEVLST--NGDTH-LG 261 (667)
Q Consensus 192 ~~Aa~~AGl----~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~---~~~~~~v~~~--~~~~~-lG 261 (667)
.++|+..|| +++.-..+..||+++.+..... .+++-+|.+++-..+..- ... +..... .+... .|
T Consensus 225 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g----~~~~s~GTs~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~g 299 (508)
T 3ifr_A 225 AEAAALTGLPTGLPVYGGAADHIASALAAGITRPG----DVLLKFGGAGDIIVASATAKSDPR-LYLDYHLVPGLYAPNG 299 (508)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCSTT----EEEEEESSSEEEEECBSCCCCBTT-BBCCBCSSTTCBCCEE
T ss_pred HHHHHHhCCCCCCeEEEECchHHHHHHhCCCCCCC----cEEEEechhhhheeeCCCcccCCC-cceeeeecCCceEEec
Confidence 356666665 4555678888888888754332 355666766554443321 111 111111 11111 12
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCC-------------cceEEE
Q 005955 262 GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG-------------IDFSEP 328 (667)
Q Consensus 262 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~-------------~~~~~~ 328 (667)
+..---...+|+.+.+. ..+. + ..+..|.+.+++. .......+.++.+... ..++..
T Consensus 300 ~~~~~G~~~~W~~~~~~-~~~~----~-~~~~~l~~~a~~~----~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~ 369 (508)
T 3ifr_A 300 CMAATGSALNWLAKLLA-PEAG----E-AAHAQLDALAAEV----PAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLS 369 (508)
T ss_dssp EESSSHHHHHHHHHHHS-TTCT----T-HHHHHHHHHHHTS----CTTGGGCEEECCTTCCC----CCCCCCEEESCCTT
T ss_pred hhhhhHHHHHHHHHHHh-hcCC----C-CCHHHHHHHHhcC----CCCCCCeEEecCCCCCCCCCCCCCcCEEEECCCCC
Confidence 22223345667666653 0011 0 0233333333321 1122233444443221 011112
Q ss_pred eeHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 329 LTRARFEELNNDLFRKTM---GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~---~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
-+|.++- +.+++.+. ..+.+.|++.+. .++.|.++||+++++.+.+++.+.| +.+|..... .++.|+||
T Consensus 370 ~~~~~l~---rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~~-~e~~alGa 441 (508)
T 3ifr_A 370 HTRGHLW---RALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGA 441 (508)
T ss_dssp CCHHHHH---HHHHHHHHHHHHHHHHHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEEC-CSTHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecCC-CCchHHHH
Confidence 3555554 44444443 333444555443 4788999999999999999999999 788866543 56899999
Q ss_pred HHhhhhhcCC
Q 005955 406 AVQGGILSGE 415 (667)
Q Consensus 406 a~~aa~~s~~ 415 (667)
|+.|+.-.+.
T Consensus 442 A~lA~~a~G~ 451 (508)
T 3ifr_A 442 AWVAAIGGGD 451 (508)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 9999876553
No 42
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=98.24 E-value=1.3e-06 Score=96.27 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=56.5
Q ss_pred eeHHHHHHHHHHHHHHHHHH---HHHHHH-HcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhH
Q 005955 329 LTRARFEELNNDLFRKTMGP---VKKAME-DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYG 404 (667)
Q Consensus 329 itr~~~e~l~~~~~~~i~~~---i~~~l~-~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~G 404 (667)
-+|.++. +.+++.+.-. +.+.|+ ..+. .++.|.++||+++++++.+++.+.| +.+|.++ ...|+.|+|
T Consensus 371 ~~~~~i~---RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alG 442 (526)
T 3ezw_A 371 VNANHII---RATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALG 442 (526)
T ss_dssp CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHH
Confidence 3555544 3444444333 333343 3453 4789999999999999999999999 7888654 456799999
Q ss_pred HHHhhhhhcCC
Q 005955 405 AAVQGGILSGE 415 (667)
Q Consensus 405 Aa~~aa~~s~~ 415 (667)
||+.|+.-.+.
T Consensus 443 AA~lA~~a~G~ 453 (526)
T 3ezw_A 443 AAYLAGLAVGF 453 (526)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhCC
Confidence 99999877664
No 43
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=97.84 E-value=5.3e-05 Score=82.78 Aligned_cols=122 Identities=16% Similarity=0.253 Sum_probs=88.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEE
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 251 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v 251 (667)
..+++|.|..++...|+.|.+++ +..|++.+.++.+|.+|++++|. ..+-+|+|+|+|+|+++.+. +|.. +
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl-----~ttGLVVDiG~g~T~VvPV~--eG~v-l 293 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI-----STSTCVVNIGAAETRIACVD--EGTV-L 293 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----SSCEEEEEECSSCEEEEEEE--TTEE-C
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----CCceEEEcCCCceEEEEEEe--CCEE-E
Confidence 46999999999999999999876 46899999999999999998864 23459999999999999884 3321 1
Q ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHHhcC---CCCCcCHHHHHHHHHHHHHHHHHhcCCc
Q 005955 252 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG---KDISKDKRAIGKLRREAERAKRALSSQH 310 (667)
Q Consensus 252 ~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~---~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 310 (667)
........+||.++|..|.+++... .+. ..+.. . .=+..++.+|+.++...
T Consensus 294 ~~ai~rL~iGG~dLT~yL~kLL~~r---gypy~~~~f~t--~---~e~eiVrdIKEk~CyVs 347 (655)
T 4am6_A 294 EHSAITLDYGGDDITRLFALFLLQS---DFPLQDWKIDS--K---HGWLLAERLKKNFTTFQ 347 (655)
T ss_dssp GGGCEEESCCHHHHHHHHHHHHHHT---TCSCCSCCTTS--H---HHHHHHHHHHHHHCCCC
T ss_pred hhheeeecchHHHHHHHHHHHHHHc---CCCccccCCCC--c---chHHHHHHHHHheEEEc
Confidence 1111125799999999999886643 111 11111 1 11356788999987663
No 44
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.31 E-value=0.0024 Score=63.68 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=41.3
Q ss_pred cceEEEecC-ccCcHHHHHHHHhHc--CCCCCCCCCCchhHHHhHHHHhh
Q 005955 363 IDEIVLVGG-STRIPKVQQLLKDYF--DGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 363 i~~ViLvGG-~sr~p~i~~~l~~~f--~~~~v~~~~~p~~avA~GAa~~a 409 (667)
++.|+++|| .+..|.+++.+++.+ .+.++..+.+|+.+.|.|||+.+
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 556999999 899999999999974 46778888999999999999975
No 45
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=97.10 E-value=0.0017 Score=66.10 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHH
Q 005955 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (667)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 266 (667)
...+..+-+..|+++.-+-.|.+|...+.+....- .....+|+|+|||+|.+++++ ++.+. ...+..+|+..+.
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~~G~v~l~ 174 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVR---EVISLPIGIVNLT 174 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEE---EEEEECCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCcee---eEEEEeccHHHHH
Confidence 44555555678998766666666655554433222 245689999999999999975 44332 1233679998877
Q ss_pred HHH
Q 005955 267 QRV 269 (667)
Q Consensus 267 ~~l 269 (667)
+.+
T Consensus 175 e~~ 177 (315)
T 1t6c_A 175 ETF 177 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 46
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=97.05 E-value=0.019 Score=58.29 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHHhhcccCC--CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHH
Q 005955 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG--GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (667)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~--~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 265 (667)
...+..+-+..|+++--+-.|-+|...+.+....- .....+|+|+|||+|.+++++ ++.+.. ..+.++|...+
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl 166 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEILW---KQSFEIGGQRL 166 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeEee---eEEEechhhHH
Confidence 34555666678998654445555544444432221 235689999999999999996 332211 22356888776
Q ss_pred HHH
Q 005955 266 DQR 268 (667)
Q Consensus 266 d~~ 268 (667)
.+.
T Consensus 167 ~e~ 169 (315)
T 3mdq_A 167 IDR 169 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 47
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=97.04 E-value=0.18 Score=51.42 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCC---CchhHHHhHHHHhhhh
Q 005955 345 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGI 411 (667)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~GAa~~aa~ 411 (667)
+.+.+.++.+..+ ++.|+|+||.+....+++.+.+.+. +.++..+. -.|.+++.|++.+...
T Consensus 232 l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 232 LVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp HHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 3344444444433 5689999999999999999998762 34444433 2266888998876543
No 48
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.02 E-value=0.0045 Score=63.39 Aligned_cols=71 Identities=17% Similarity=0.054 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCCccCcceEEEecC-ccCcHHHHHHHHhHc-----CCCCCCCCCCchhHHHh
Q 005955 334 FEELNNDLFRKTMGPVKKAM----EDAGLEKNQIDEIVLVGG-STRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAY 403 (667)
Q Consensus 334 ~e~l~~~~~~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG-~sr~p~i~~~l~~~f-----~~~~v~~~~~p~~avA~ 403 (667)
-++++..++..+.+.|-... +..+ ++.|+++|| .+..|.+++.|++.+ ++.++..+.+|+.+.|+
T Consensus 278 ~eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAl 352 (360)
T 2i7n_A 278 KEDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAV 352 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHH
Confidence 35555666555555554442 3323 456999999 899999999999987 24677778899999999
Q ss_pred HHHHhh
Q 005955 404 GAAVQG 409 (667)
Q Consensus 404 GAa~~a 409 (667)
|||+.+
T Consensus 353 GAaL~~ 358 (360)
T 2i7n_A 353 GALLEL 358 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999975
No 49
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=96.93 E-value=0.085 Score=53.69 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=29.3
Q ss_pred HcCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 197 IAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 197 ~AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
..|++ +.+.|+..|+|++....-. ...++++++-+|.| +-..++
T Consensus 95 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 139 (321)
T 3vgl_A 95 RVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGII 139 (321)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEE
Confidence 34776 7799999999987543222 23466788888887 444444
No 50
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=96.81 E-value=0.19 Score=51.30 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCC---CchhHHHhHHHHhhhhhcC
Q 005955 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~---~p~~avA~GAa~~aa~~s~ 414 (667)
+.+.+.+.+.++++..+ ++.|+|+||.+...++++.+.+.+. +.++..+. -.|.+++.|+|.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 33444555566666544 5689999999999999999998773 33433322 2377999999876654443
No 51
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=96.78 E-value=0.52 Score=47.12 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+++.|+|.||.+..+.+.+.+++.++..++.... .+.+.+.||+..+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 4678999999987788888888887544555444 567899999988754
No 52
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=96.76 E-value=0.25 Score=49.65 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=31.2
Q ss_pred CcceEEEecCcc-Cc-HHHHHHHHhHcCC-------CCCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGST-RI-PKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~s-r~-p~i~~~l~~~f~~-------~~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|.||.+ .. |.+.+.+++.+.. .++....-.+.+.++|||.++.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 467899999887 54 6566666555411 1122233456799999998874
No 53
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.65 E-value=0.0026 Score=70.37 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=63.4
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHH
Q 005955 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~ 407 (667)
.-+|.++-.+++.+++.+.-.++..++...-....++.|.++||+++++.+.+++.+.| +.+|..+ ...++.|+|||+
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~ 485 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAM 485 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHH
Confidence 44788875556666666655555544433212345789999999999999999999999 7887654 456799999999
Q ss_pred hhhhhcCC
Q 005955 408 QGGILSGE 415 (667)
Q Consensus 408 ~aa~~s~~ 415 (667)
.|+.-.+.
T Consensus 486 lA~~a~G~ 493 (554)
T 3l0q_A 486 MGTVAAGV 493 (554)
T ss_dssp HHHHHTTS
T ss_pred HHHHHcCC
Confidence 99876554
No 54
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=96.58 E-value=0.0039 Score=68.63 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
..+++.+++.+.-.++..++..+.....++.|.++||+++++++.+++.+.| +.+|... .+.++.|+|||+.|+.-.
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGL 483 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHh
Confidence 5666667777766677777766554456789999999999999999999999 7887654 567899999999997644
No 55
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=96.57 E-value=0.097 Score=53.23 Aligned_cols=49 Identities=22% Similarity=0.107 Sum_probs=33.5
Q ss_pred CcceEEEecCccCc-HHHHHHHHhHcC---------CCCCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRI-PKVQQLLKDYFD---------GKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~-p~i~~~l~~~f~---------~~~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|.||.++. +.+.+.+++.+. ..++....-.+.+.++|||.++.
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 36789999999886 666666655441 22344444567899999998874
No 56
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=96.53 E-value=0.0031 Score=68.55 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
++++.+++.+.-.++..++........++.|.++||+++++.+.+++.+.+ +.+|.....++.+.|+|||+.|+.-.+.
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g~ 438 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcCC
Confidence 345555555554444444433212235678999999999999999999999 7888766554446999999999876553
No 57
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=96.52 E-value=0.26 Score=50.18 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.2
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCC--------CCCCCCCchhHHHhHHHHhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK--------EPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~--------~v~~~~~p~~avA~GAa~~a 409 (667)
+++.|+|.||.+..+.+.+.+++.+... ++....-.+.+.++|||..+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 4678999999998887777777766221 12222234679999999876
No 58
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=96.51 E-value=0.0048 Score=67.38 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=56.0
Q ss_pred eHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHH
Q 005955 330 TRARFEELNNDLFRKTMGP---VKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~---i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa 406 (667)
++.++ ++.+++.+.-. +.+.|++.+. .++.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+|||
T Consensus 395 ~~~~l---~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA 466 (515)
T 3i8b_A 395 TRENL---ARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAA 466 (515)
T ss_dssp SHHHH---HHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHH
Confidence 45544 44444444433 3344555443 4788999999999999999999999 7887653 45679999999
Q ss_pred HhhhhhcCC
Q 005955 407 VQGGILSGE 415 (667)
Q Consensus 407 ~~aa~~s~~ 415 (667)
+.|+.-.+.
T Consensus 467 ~lA~~a~G~ 475 (515)
T 3i8b_A 467 RQAAWVLSG 475 (515)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHcCC
Confidence 999865543
No 59
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=96.48 E-value=0.0046 Score=67.40 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcC
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~ 414 (667)
.++++.+++.+.-.++..++...... .++.|.++||+++++.+.+++.+.+ +.+|..+ .+.++.|+|||+.|+.-.+
T Consensus 367 ~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 367 EHLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 34455666666666666666543333 6788999999999999999999999 7887654 4456999999999987655
Q ss_pred C
Q 005955 415 E 415 (667)
Q Consensus 415 ~ 415 (667)
.
T Consensus 444 ~ 444 (497)
T 2zf5_O 444 Y 444 (497)
T ss_dssp S
T ss_pred c
Confidence 3
No 60
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=96.33 E-value=0.96 Score=46.19 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=39.5
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHH-cC--CceeeeecchHHHHHHhhcccCCCceEEEEEEcCCce
Q 005955 171 KIKDAVVTVPAYFNDAQRQATKDAGII-AG--LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (667)
Q Consensus 171 ~~~~~viTVPa~~~~~qr~~l~~Aa~~-AG--l~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT 236 (667)
++..+.|++|...+......+++..+. .| ...+.+.|+..|+|+++ . . ...+++-+|.|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~---~--~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T---P--DGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C---S--SCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C---C--CCcEEEEEcCCc
Confidence 467899999998887655556555443 34 13478899999999884 2 1 234555556554
No 61
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=96.23 E-value=0.32 Score=48.46 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=32.8
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcC-----------CCCCCCCCCchhHHHhHHHHhhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFD-----------GKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~-----------~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+++.|+|.||.+..|.+.+.+++.+. ..++....-.+.+.++||+..+..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 35789999998877777666665441 122222334467899999988754
No 62
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=96.21 E-value=0.22 Score=50.52 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=33.3
Q ss_pred cceEEEecCccC-cHHHHHHHHhHcCC---------CCCCCCCCchhHHHhHHHHhhhh
Q 005955 363 IDEIVLVGGSTR-IPKVQQLLKDYFDG---------KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 363 i~~ViLvGG~sr-~p~i~~~l~~~f~~---------~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
++.|+|.||.+. .|.+.+.+++.+.. .++......+.+.++||+..+..
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 568999999886 57777777766521 12222334567899999988754
No 63
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=96.12 E-value=0.0055 Score=67.92 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=56.7
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHh
Q 005955 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~ 408 (667)
+|.++ ++.+++.+.-.++..++...-....++.|.++||++ +++.+.+++.+.| +.+|... .+.++.|+|||+.
T Consensus 410 t~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~ks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~l 484 (572)
T 3jvp_A 410 KPEEI---YRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREIKVA-ASKQTPALGAAMF 484 (572)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEESSHHHHCHHHHHHHHHHH-TSCEEEB-CCSSHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcCEEEEEcCchhhCHHHHHHHHHHH-CCeeEec-CCCccHHHHHHHH
Confidence 55554 444555554444443333211234578999999999 9999999999999 7887554 4678999999999
Q ss_pred hhhhcC
Q 005955 409 GGILSG 414 (667)
Q Consensus 409 aa~~s~ 414 (667)
|+.-.+
T Consensus 485 A~~a~G 490 (572)
T 3jvp_A 485 ASVAAG 490 (572)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987655
No 64
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=96.08 E-value=0.011 Score=64.44 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred eHHHHHHHHHHHHHHHHHHH---HHHHHH-cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 330 TRARFEELNNDLFRKTMGPV---KKAMED-AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i---~~~l~~-~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
+|.++- +.+++.+.-.+ .+.|++ .+. .++.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+||
T Consensus 373 ~~~~l~---RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGa 444 (506)
T 3h3n_X 373 TKEDFV---RATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGA 444 (506)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHH
Confidence 555544 44444443333 334443 343 4788999999999999999999999 7877553 5678999999
Q ss_pred HHhhhhhcCC
Q 005955 406 AVQGGILSGE 415 (667)
Q Consensus 406 a~~aa~~s~~ 415 (667)
|+.|+.-.+.
T Consensus 445 A~lA~~a~G~ 454 (506)
T 3h3n_X 445 AYLAGLAVGF 454 (506)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhCc
Confidence 9999876654
No 65
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=96.07 E-value=0.29 Score=49.01 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=35.9
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCC-----CCCCCCCchhHHHhHHHHhhhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK-----EPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~-----~v~~~~~p~~avA~GAa~~aa~ 411 (667)
+++.|+|.||.+..+.+.+.+++.+... ++....-.+.+.++||+.++..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 4678999999998888888888877321 1222334567999999988754
No 66
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=96.07 E-value=0.0059 Score=66.57 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=55.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHH---HHHH-cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 330 TRARFEELNNDLFRKTMGPVKK---AMED-AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~---~l~~-~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
+|.++ ++.+++.+.-.++. .|++ .+. .++.|.++||+++++++.+++.+.| +.+|... .+.++.|+||
T Consensus 374 ~~~~l---~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGa 445 (501)
T 3g25_A 374 EKEHF---IRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGA 445 (501)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHH
Confidence 45544 44444444433333 3433 343 4788999999999999999999999 7877553 4678999999
Q ss_pred HHhhhhhcCC
Q 005955 406 AVQGGILSGE 415 (667)
Q Consensus 406 a~~aa~~s~~ 415 (667)
|+.|+.-.+.
T Consensus 446 A~la~~a~G~ 455 (501)
T 3g25_A 446 AFLAGLAVGF 455 (501)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhCc
Confidence 9999876654
No 67
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=96.04 E-value=0.0047 Score=67.63 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=43.6
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
.++.|.++||++++|.+.+++.+.+ +.+|..+ .+.++.|+|||+.|+.-.+.
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G~ 476 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAGV 476 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcCC
Confidence 4788999999999999999999999 7887654 45779999999999876654
No 68
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=95.96 E-value=0.012 Score=64.02 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhc
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s 413 (667)
.++++.+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+|||+.|+.-.
T Consensus 370 ~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 370 AHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGA 447 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhc
Confidence 34445555555555555554431 12234678999999999999999999999 7887654 456799999999998655
Q ss_pred C
Q 005955 414 G 414 (667)
Q Consensus 414 ~ 414 (667)
+
T Consensus 448 G 448 (495)
T 2dpn_A 448 G 448 (495)
T ss_dssp T
T ss_pred C
Confidence 4
No 69
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.95 E-value=0.012 Score=64.29 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=55.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHH---HHHHHc-CCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHH
Q 005955 330 TRARFEELNNDLFRKTMGPVK---KAMEDA-GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGA 405 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~---~~l~~~-~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GA 405 (667)
+|.++- +.+++.+.-.++ +.|++. +. .++.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+||
T Consensus 371 ~~~~l~---RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGa 442 (510)
T 2p3r_A 371 NANHII---RATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGA 442 (510)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEeCchhcCHHHHHHHHHHh-CCceEec-CCCCcHHHHH
Confidence 455544 444444443333 334332 43 4788999999999999999999999 7877553 4677999999
Q ss_pred HHhhhhhcCC
Q 005955 406 AVQGGILSGE 415 (667)
Q Consensus 406 a~~aa~~s~~ 415 (667)
|+.|+.-.+.
T Consensus 443 A~lA~~a~G~ 452 (510)
T 2p3r_A 443 AYLAGLAVGF 452 (510)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhCc
Confidence 9999876654
No 70
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=95.81 E-value=0.017 Score=62.99 Aligned_cols=52 Identities=27% Similarity=0.341 Sum_probs=44.2
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
.++.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G~ 454 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVGF 454 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcCc
Confidence 3678999999999999999999999 7887654 45679999999999876553
No 71
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=95.66 E-value=0.054 Score=55.59 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCceeeeecchHHHHHHh-hcccCC----CceEEEEEEcCCceeEEEEEEE--eC--CeEEEEEecCCC
Q 005955 188 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG----GEKNILVFDLGGGTFDVSILTI--DN--GVFEVLSTNGDT 258 (667)
Q Consensus 188 r~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~----~~~~vlVvD~GggT~dvsv~~~--~~--~~~~v~~~~~~~ 258 (667)
...+..+-+..|+++ .+|+..+-|.+.| +..... ....++|+|+|||+|+++++.- .. +.+. .....
T Consensus 105 ~~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~---~~~Sl 180 (343)
T 3cer_A 105 EEFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQ---GAFSM 180 (343)
T ss_dssp HHHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCS---EEEEE
T ss_pred HHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccc---eeEEE
Confidence 345555666679985 4555554444444 432221 2356899999999999999864 22 1100 12235
Q ss_pred CCcchHHHHHH
Q 005955 259 HLGGEDFDQRV 269 (667)
Q Consensus 259 ~lGG~~id~~l 269 (667)
.+|+..+.+.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 78998887664
No 72
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=95.59 E-value=0.012 Score=64.18 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=43.3
Q ss_pred c-ceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhhcCC
Q 005955 363 I-DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (667)
Q Consensus 363 i-~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~s~~ 415 (667)
+ +.|.++||+++++.+.+++.+.+ +.+|... .+.++.|+|||+.|+.-.+.
T Consensus 407 ~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~~~G~ 458 (503)
T 2w40_A 407 MLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGLEVKI 458 (503)
T ss_dssp CCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTTC
T ss_pred ccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHHHhCc
Confidence 5 78999999999999999999999 7887654 45669999999999876553
No 73
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=95.54 E-value=0.025 Score=61.42 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=51.2
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHH
Q 005955 328 PLTRARFEELNNDLFRKTMGPVKKAMED-AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (667)
Q Consensus 328 ~itr~~~e~l~~~~~~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa 406 (667)
..+|.++-..+-+-+.--...+.+.|++ .+. .++.|.++||+++++++.+++.+.+ +.+|.... .++.|+|||
T Consensus 361 ~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~~--~e~~alGaa 434 (489)
T 2uyt_A 361 PESDAELARCIFDSLALLYADVLHELAQLRGE---DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAGP--VEASTLGNI 434 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEECC--TTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecCC--ccHhHHHHH
Confidence 3456555443322222222333334443 343 4678999999999999999999999 78876442 689999996
Q ss_pred Hhhhh
Q 005955 407 VQGGI 411 (667)
Q Consensus 407 ~~aa~ 411 (667)
+.|+.
T Consensus 435 ~~A~~ 439 (489)
T 2uyt_A 435 GIQLM 439 (489)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66644
No 74
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=95.30 E-value=0.45 Score=48.26 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=27.6
Q ss_pred cCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
.|++ +.+.|+..|+|++...... ...+.++++-+|.| +-..++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4666 6889999999986432221 12457788888877 334433
No 75
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=95.09 E-value=0.85 Score=49.86 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=90.4
Q ss_pred CCCcEEEEe-CCCCCHHHHHHH--HHHHHHcCCceeeeecchHHHHHHhhcccCC-CceEEEEEEcCCceeEEEEEEEeC
Q 005955 171 KIKDAVVTV-PAYFNDAQRQAT--KDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDN 246 (667)
Q Consensus 171 ~~~~~viTV-Pa~~~~~qr~~l--~~Aa~~AGl~~~~li~Ep~AaAl~y~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~ 246 (667)
.++.+++|. |..|+....... +..|...|++.+. ++--.|-+++....... .+ +++-+.||++.+..+. .
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p---~~l~vsGg~t~~~~~~--~ 145 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP---LTLYVSGGNTQVIAYV--S 145 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC---EEEEECSSCEEEEEEE--T
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC---cEEEEcCCCcEEEEEe--C
Confidence 456676765 877664432221 2234445766554 44444444332222221 23 5556667777665444 6
Q ss_pred CeEEEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCcceE
Q 005955 247 GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFS 326 (667)
Q Consensus 247 ~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~ 326 (667)
+.+++++...+. --|+.||..- +..|...+..+ .|...|.+.+ . .+.++....+.+++
T Consensus 146 ~~~~~lg~t~d~-s~G~~~D~~a---------~~lgl~~~gg~----~ie~lA~~g~------~--~~~~p~~~~~~~~s 203 (540)
T 3en9_A 146 KKYRVFGETLDI-AVGNCLDQFA---------RYVNLPHPGGP----YIEELARKGK------K--LVDLPYTVKGMDIA 203 (540)
T ss_dssp TEEEEEEEBSSS-CHHHHHHHHH---------HHTTCCSSCHH----HHHHHHHTCC------C--CCCCCCCEETTEEC
T ss_pred CceEEEeeccch-HhHHHHHHHH---------HHcCCCCCCHH----HHHHHHHcCC------c--cCcCCCCCCCccee
Confidence 788888876543 3466666432 22343332222 1222221111 0 11111111122221
Q ss_pred EE-------------eeHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC
Q 005955 327 EP-------------LTRARFEELNN-DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (667)
Q Consensus 327 ~~-------------itr~~~e~l~~-~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~ 387 (667)
+. .+.+++-..++ .+++.+.+.+.++++..+ ++.|+|+||.+....+++.+.+.+.
T Consensus 204 fsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 204 FSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 10 01222221122 233344455566666644 5689999999999999999998773
No 76
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.01 E-value=1 Score=46.72 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=31.0
Q ss_pred CcceEEEecCccCc-HHHHHHHHhHcCC-------CCCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRI-PKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~-p~i~~~l~~~f~~-------~~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|.||.+.. |.+.+.+++.+.. .++....-.+.+.+.||+..+.
T Consensus 314 dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 314 GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 35689999998864 6666666655411 1222222345689999998764
No 77
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=94.88 E-value=0.051 Score=59.10 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCceeeeecchHHHHHHh-hcccCC-CceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHHH
Q 005955 189 QATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (667)
Q Consensus 189 ~~l~~Aa~~AGl~~~~li~Ep~AaAl~y-~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 266 (667)
..+..+-+..|+++ .+|+..+-|.+.| |..... ..+..+|+|+|||+|.+++++ ++.+.. ....++|...+.
T Consensus 100 ~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrlt 173 (513)
T 1u6z_A 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPIL---VESRRMGCVSFA 173 (513)
T ss_dssp HHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHHHH
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeeeE---EEEEeccHHHHH
Confidence 34444555579885 4555554444444 432221 122689999999999999874 443321 223578988886
Q ss_pred HHH
Q 005955 267 QRV 269 (667)
Q Consensus 267 ~~l 269 (667)
+.+
T Consensus 174 e~f 176 (513)
T 1u6z_A 174 QLY 176 (513)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 78
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=94.36 E-value=0.82 Score=47.94 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=27.9
Q ss_pred cCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
.|++ +.+.|+..|+|++...... ...++++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 6789999999987533221 13456788888877 334444
No 79
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=93.65 E-value=0.06 Score=58.06 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=54.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhH-cCCCCCCCCCCchhHHHhHHHHhhhh
Q 005955 335 EELNNDLFRK--TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY-FDGKEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 335 e~l~~~~~~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~-f~~~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
..+.+.+++. +.-.++..++...- .+.|.++||++++|.+.+++.+. | +.+|..+ ...++.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~-~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTA-NAHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEE-SSCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEc-CCCchHHHHHHHHhCc
Confidence 4566666663 55555666665431 26899999999999999999999 9 7887665 3466899999999975
Q ss_pred h
Q 005955 412 L 412 (667)
Q Consensus 412 ~ 412 (667)
-
T Consensus 436 a 436 (482)
T 3h6e_A 436 G 436 (482)
T ss_dssp T
T ss_pred c
Confidence 3
No 80
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.59 E-value=2.4 Score=44.64 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=27.9
Q ss_pred cCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
.|++ +.+.|+..|+|++-..... ...++++++-+|.| +-..++
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 251 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIV 251 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 6789999999987533221 13456788888877 334444
No 81
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=93.33 E-value=1.1 Score=44.58 Aligned_cols=69 Identities=9% Similarity=-0.101 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcc-CcceEEEecCccCc--HHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhhhh
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKN-QIDEIVLVGGSTRI--PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~-~i~~ViLvGG~sr~--p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa~~ 412 (667)
.....++++..+.+-..+ . +... +++.|+|.||.++. +.+++.+++.. .++ ..|..+...||+.++...
T Consensus 210 ~~A~~i~~~~~~~La~~i-~--~~~~~~p~~vvlgGGv~~~~~~~l~~~l~~~~--~~i---~~~~~a~~~GA~~la~~~ 281 (291)
T 1zbs_A 210 PAVYSLVQNSFDDFLVRN-V--LRYNRPDLPLHFIGSVAFHYREVLSSVIKKRG--LTL---GSVLQSPMEGLIQYHHNN 281 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH-T--GGGCCTTSCEEEESHHHHHTHHHHHHHHHHTT--CCE---EEEESCSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-h--cccCCCCceEEEECchHHhhHHHHHHHHHHcC--Cee---cccCcCHHHHHHHHHHhh
Confidence 344455555555555555 2 2222 57789999998876 66666666643 122 235679999999998643
No 82
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=92.16 E-value=5.4 Score=42.23 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCce--eeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 184 NDAQRQATKDAGIIAGLNV--ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~--~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
...-.+.+++|...-|+++ +.++|+..|++++..+.. +.+++.+=+|.|+=-+.+...
T Consensus 171 g~dv~~~L~~al~r~~l~v~v~al~NDtv~tlla~~y~~---~~~~iglIlGTG~na~yve~~ 230 (451)
T 1bdg_A 171 GHNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALED---PKCAVGLIVGTGTNVAYIEDS 230 (451)
T ss_dssp TSBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEET
T ss_pred CCcHHHHHHHHHHHcCCCcceEEEEEchHHHHHHhcccC---CCcEEEEEEeCCcceEEEEcC
Confidence 4556778888887778763 589999999998776653 446777788888766666653
No 83
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=89.81 E-value=0.22 Score=50.05 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=26.6
Q ss_pred eeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 203 ~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
.....-|.|.|...+.. .. ...+++|+||.|||+..+.
T Consensus 108 ~~aaanw~ASa~~~A~~-~~--~~~llvDIGsTTTDIipi~ 145 (334)
T 3cet_A 108 KVSASNWCGTAKWVSKN-IE--ENCILVDMGSTTTDIIPIV 145 (334)
T ss_dssp GTBCCSSHHHHHHHHHH-TC--SSEEEEEECSSCEEEEEEE
T ss_pred HHHhcCHHHHHHHHHHh-cC--CCEEEEEcCcchhhhhhhc
Confidence 33466777777743333 21 2479999999999999887
No 84
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=89.28 E-value=7.2 Score=45.34 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcC-Cc--eeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 185 DAQRQATKDAGIIAG-LN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 185 ~~qr~~l~~Aa~~AG-l~--~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
..-++.+.++...-| ++ ++.++|+..|++++-... ..++++.+=+|.|+=-..+..
T Consensus 183 ~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~---~~~~~iglilGTGvngg~i~~ 241 (917)
T 1cza_N 183 ADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD---DQHCEVGLIIGTGTNACYMEE 241 (917)
T ss_dssp SBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHH---CTTEEEEEEESSSEEEEEEEE
T ss_pred CchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhcc---CCCcEEEEEEECCcceEEEec
Confidence 455667777776666 54 689999999999977655 245677778888865555544
No 85
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=88.70 E-value=1.1 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.8
Q ss_pred cEEEEEcCccceEEEEEECC
Q 005955 37 TVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g 56 (667)
..++||+|+|+++.++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEEECSSEEEEEEESSS
T ss_pred eEEEEEECCCeEEEEEEECC
Confidence 47999999999999999755
No 86
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=87.64 E-value=1.2 Score=48.05 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCceeeeecch-HHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCCCCcchHH
Q 005955 187 QRQATKDAGIIAGLNVARIINEP-TAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (667)
Q Consensus 187 qr~~l~~Aa~~AGl~~~~li~Ep-~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 265 (667)
....+..+-+..|+++ .+|+-. +|...+.+....-.....+|+|+|||+|.+++++ ++.+. ...+.++|...+
T Consensus 102 ~~~fl~~i~~~tG~~i-evIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl 175 (508)
T 3hi0_A 102 GPDFIREAEAILGCEI-EVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK--DKSCG---EGITLPLGGLRL 175 (508)
T ss_dssp HHHHHHHHHHHHTSCE-EECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE--TTEEC---CCEEESCCHHHH
T ss_pred HHHHHHHHHHHHCCCe-EEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee--CCeee---eEEEecceEEeh
Confidence 3445566666789985 455544 4444444443222223459999999999999987 33221 122356888777
Q ss_pred HH
Q 005955 266 DQ 267 (667)
Q Consensus 266 d~ 267 (667)
.+
T Consensus 176 ~e 177 (508)
T 3hi0_A 176 SE 177 (508)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 87
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=87.57 E-value=23 Score=34.92 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccC--cHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTR--IPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 337 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr--~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
.+..++++....+-..+...-.. +++.|+|.||.+. .|++.+.+++.+ . .|+.+.+.||+++|.
T Consensus 227 ~A~~i~~~~~~~L~~~l~~l~~~--~p~~VvlgGgv~~~~~~~l~~~l~~~i-----~---~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 227 EADALLRQAGEDAWAIARALDPQ--DELPVALCGGLGQALRDWLPPGFRQRL-----V---APQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CCSCEEEESHHHHHTGGGSCHHHHHHC-----C---CCSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEECCchHhHHHHHHHHHHhhc-----c---CCCCCHHHHHHHHHh
Confidence 34455566666665555554222 5778999999875 566777777654 1 145788999999874
No 88
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=86.56 E-value=1.9 Score=44.06 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCC----CCCchhHHHhHHHHhhh
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~----~~~p~~avA~GAa~~aa 410 (667)
+++..-+.+-+...|.+.++... ..++.|+++||+++.|.|.++|++.+++.+|.. .++++.-=|..-|++|.
T Consensus 259 ~Dv~ATLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~LA~ 335 (371)
T 3qbx_A 259 ADIQATLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAH 335 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHHHH
Confidence 34444555555556666665533 236789999999999999999999997655422 34455545555666665
Q ss_pred h
Q 005955 411 I 411 (667)
Q Consensus 411 ~ 411 (667)
.
T Consensus 336 ~ 336 (371)
T 3qbx_A 336 R 336 (371)
T ss_dssp H
T ss_pred H
Confidence 4
No 89
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=86.53 E-value=1.1 Score=47.47 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCc--eeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 186 AQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 186 ~qr~~l~~Aa~~AGl~--~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
.-++.++++....|++ ++.++|+..|++++-.+.. .++++.+=+|.|+=-..+...
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~---~~~~iglilGTGvgg~~i~~~ 221 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTD---AXIKMGIIFGSGVNAAYWCDS 221 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHC---TTEEEEEEESSSEEEEEEECG
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcC---CccEEEEEECcEEEEEEEECC
Confidence 5567777877666665 4889999999999876622 456777788888766666654
No 90
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=84.99 E-value=34 Score=37.14 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCC-CCchhHHHhHHHHh
Q 005955 331 RARFEELNNDLF-RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG-VNPDEAVAYGAAVQ 408 (667)
Q Consensus 331 r~~~e~l~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~-~~p~~avA~GAa~~ 408 (667)
..++-..++..+ +-+.+.+..+.+..+ ++.|.|.||.+....+++.+.+..+-..+..+ .--|.++++|+|++
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~ 354 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA 354 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence 344443343333 333445555555544 67899999999999999999876522133222 23488999999999
Q ss_pred hhhhcCC
Q 005955 409 GGILSGE 415 (667)
Q Consensus 409 aa~~s~~ 415 (667)
+....+.
T Consensus 355 a~~~~g~ 361 (576)
T 3ven_A 355 VAVELGD 361 (576)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8766543
No 91
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=84.98 E-value=5.6 Score=42.33 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCce--eeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEEe
Q 005955 184 NDAQRQATKDAGIIAGLNV--ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID 245 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AGl~~--~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~~ 245 (667)
...-.+.+++|.+.-|+++ +.++|+..|++++..+.. ..+++.+=+|.|+=-+.+....
T Consensus 184 G~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~---~~~~iglIlGTG~N~~y~e~~~ 244 (485)
T 3o8m_A 184 GHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD---PQTKMGIIIGTGVNGAYYDVVS 244 (485)
T ss_dssp TSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC---TTEEEEEEESSSEEEEEEEEGG
T ss_pred CccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCC---CCcEEEEEEecCcceEEEeecc
Confidence 3556778889998888863 678999999998876553 4567777788888777666543
No 92
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=82.69 E-value=2.8 Score=42.77 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCC----CCCCchhHHHhHHHHhhh
Q 005955 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN----KGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 335 e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~----~~~~p~~avA~GAa~~aa 410 (667)
+++..-+.+-+...|.+.++... ..+.|+++||+++.|.+.++|++.+++.+|. ..++|+.-=|..-|++|.
T Consensus 266 ~Dv~ATLt~~TA~sIa~~~~~~~----~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~~EA~aFA~LA~ 341 (370)
T 3cqy_A 266 EDIQSTLLDLTCHSIAQDILKLA----QEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAFAWLAM 341 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhHHHHHHHHHHHH
Confidence 45555556666666777776542 3568999999999999999999999764442 233454433444455554
Q ss_pred h
Q 005955 411 I 411 (667)
Q Consensus 411 ~ 411 (667)
.
T Consensus 342 ~ 342 (370)
T 3cqy_A 342 R 342 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 93
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=77.12 E-value=4.6 Score=44.67 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=38.4
Q ss_pred cceEEEecCccCcHHHHHHHHhHcCCCCCCC---CCCchhHHHhHHHHhhhh
Q 005955 363 IDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK---GVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 363 i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~---~~~p~~avA~GAa~~aa~ 411 (667)
++.|+|+||.+...++++.+.+.+.+.++.. ..--|.++|+|.|++|+.
T Consensus 600 ~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 600 ITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred CCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999874333322 223488999999998864
No 94
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=74.53 E-value=11 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (667)
...++|||+|.|+++++++++|
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d~G 29 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQGG 29 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEETT
T ss_pred CCEEEEEEECcceEEEEEEECC
Confidence 4689999999999999998843
No 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=73.77 E-value=4.3 Score=45.81 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC--CCCCCC---CCCchhHHHhHHHHhhhhhcC
Q 005955 346 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNK---GVNPDEAVAYGAAVQGGILSG 414 (667)
Q Consensus 346 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~---~~~p~~avA~GAa~~aa~~s~ 414 (667)
.+.+.++.+..+ ++.|+|+||.+....+++.+.+.+. +.++.. ..--|-++|+|.|++|+....
T Consensus 682 ~~~~~~a~~~~g-----~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialGQA~~a~~~~~ 750 (761)
T 3vth_A 682 YDLANLIRKETG-----INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANKILE 750 (761)
T ss_dssp HHHHHHHHHHHC-----CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-----CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHHHHHHHHHHhc
Confidence 334444444433 5789999999999999999998872 333322 122388999999999875543
No 96
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=73.55 E-value=2.1 Score=34.76 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.6
Q ss_pred cEEEEEcCccceEEEEEECC
Q 005955 37 TVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g 56 (667)
.++|||+|+..+.+|+.++.
T Consensus 2 riLglD~G~kriGvAvsd~~ 21 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEG 21 (98)
T ss_dssp CEEEEEESSSEEEEEEECSC
T ss_pred cEEEEEeCCCEEEEEEEeCC
Confidence 48999999999999998654
No 97
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=72.97 E-value=7.9 Score=38.51 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=25.7
Q ss_pred HcCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCc
Q 005955 197 IAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGG 235 (667)
Q Consensus 197 ~AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~Ggg 235 (667)
..|++ +.+.|+..|+|++-...-. ...++++++-+|.|
T Consensus 96 ~~~~p-V~v~NDanaaalaE~~~G~~~~~~~~~~l~~GtG 134 (302)
T 3epq_A 96 EMXIP-VGFSTDVNAAALGEFLFGEAXGLDSCLYITIGTG 134 (302)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS
T ss_pred HhCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc
Confidence 34776 6799999999987543322 23456777878765
No 98
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=72.62 E-value=5.9 Score=44.89 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcC--CCCCCCCCC---chhHHHhHHHHhhhhh
Q 005955 346 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN---PDEAVAYGAAVQGGIL 412 (667)
Q Consensus 346 ~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~--~~~v~~~~~---p~~avA~GAa~~aa~~ 412 (667)
.+.+.++.++.+ ++.|+|+||.+....+++.+.+.+. +.++..+.. -|..+|+|+|++|+..
T Consensus 694 ~~~~~~a~~~tg-----~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~~~ 760 (772)
T 4g9i_A 694 AHTAVERAREFG-----VKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGGLY 760 (772)
T ss_dssp HHHHHHHHHTTT-----CSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----cCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHHHH
Confidence 344455555433 6789999999999999999999873 334444321 2889999999988654
No 99
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=71.01 E-value=2.9 Score=40.89 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=19.2
Q ss_pred CCcEEEEEcCccceEEEEEECCe
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~ 57 (667)
|+.+++||+|+|+++.++++++.
T Consensus 1 M~MlL~IDIGNT~iK~gl~d~~~ 23 (266)
T 3djc_A 1 MSLILCIDVGNSHIYGGVFDGDE 23 (266)
T ss_dssp --CEEEEEECSSEEEEEEEETTE
T ss_pred CceEEEEEECCCeEEEEEEECCE
Confidence 34689999999999999998774
No 100
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=70.08 E-value=2.8 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=19.4
Q ss_pred cCCcEEEEEcCccceEEEEEECC
Q 005955 34 KLGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~g 56 (667)
+|.+++|||+|||++++++++..
T Consensus 8 ~~~~~lgID~GTts~Ka~l~d~~ 30 (538)
T 4bc3_A 8 PRRCCLGWDFSTQQVKVVAVDAE 30 (538)
T ss_dssp -CCEEEEEEECSSEEEEEEEETT
T ss_pred CCCEEEEEEEcCcCEEEEEECCC
Confidence 45799999999999999998743
No 101
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=69.63 E-value=3.4 Score=35.83 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.7
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (667)
+.++|||+|+..+.+|+.++.
T Consensus 3 ~~iLglD~G~kriGvAvsd~~ 23 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRI 23 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETT
T ss_pred CeEEEEEeCCCEEEEEEEcCC
Confidence 368999999999999999865
No 102
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=68.79 E-value=2.4 Score=45.51 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.4
Q ss_pred cCCcEEEEEcCccceEEEEEE
Q 005955 34 KLGTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~ 54 (667)
+|..++|||+|||++++++++
T Consensus 2 ~~~~~lgiDiGtts~k~~l~d 22 (489)
T 2uyt_A 2 TFRNCVAVDLGASSGRVMLAR 22 (489)
T ss_dssp CCEEEEEEEECSSEEEEEEEE
T ss_pred CcceEEEEEecCCCceEEEEE
Confidence 356799999999999999985
No 103
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=67.91 E-value=2.7 Score=45.39 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
|.+++|||+|||++++++++.
T Consensus 2 ~~~~lgIDiGtts~k~~l~d~ 22 (510)
T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDH 22 (510)
T ss_dssp CCEEEEEEECSSEEEEEEECT
T ss_pred CcEEEEEEcCCcceEEEEECC
Confidence 568999999999999999864
No 104
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=67.74 E-value=3.5 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=18.3
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 005955 35 LGTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~ 54 (667)
+.+++|||+|||++++++++
T Consensus 4 ~~~~lgIDiGtts~ka~l~d 23 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTD 23 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEE
T ss_pred CcEEEEEEeccccEEEEEEE
Confidence 35899999999999999998
No 105
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=66.51 E-value=7.7 Score=39.53 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=26.1
Q ss_pred eeeecchHHHHHHh-----hcccC--CCceEEEEEEcCCceeEEEEEE
Q 005955 203 ARIINEPTAAAIAY-----GLDKK--GGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 203 ~~li~Ep~AaAl~y-----~~~~~--~~~~~vlVvD~GggT~dvsv~~ 243 (667)
+++|+-.+-|.+.| .+..- ...++++|+|+|||+|.++...
T Consensus 111 v~VIsG~eEa~~~~~gv~~~l~~~~~~~~~t~~v~DiGGGStei~~~~ 158 (353)
T 3aap_A 111 AKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPM 158 (353)
T ss_dssp EEECCHHHHHHHHHHHHHHHTTCSSSCCSSCEEEEEECSSEEEEEEEC
T ss_pred EEECChHHHHHHHHHHHHHHhhhccccccccEEEEEeCCCceEEEEec
Confidence 45666555444433 23221 1234699999999999999873
No 106
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=66.44 E-value=2.5 Score=45.33 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=16.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
|.+++|||+|||++++++++.
T Consensus 5 m~~~lgIDiGTts~Ka~l~d~ 25 (482)
T 3h6e_A 5 TGATIVIDLGKTLSKVSLWDL 25 (482)
T ss_dssp ---CEEEEECSSEEEEEEECT
T ss_pred hceEEEEEcCCCCeEEEEEEC
Confidence 458999999999999999963
No 107
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=65.81 E-value=3.7 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.8
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
|.+++|||+|||++++++++.
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~ 24 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDL 24 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEET
T ss_pred CcEEEEEEECcccEEEEEECC
Confidence 468999999999999999974
No 108
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=64.76 E-value=3.4 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.3
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 005955 36 GTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (667)
..++|||+|||++++++++..
T Consensus 4 ~~~lgIDiGtT~~k~~l~d~~ 24 (503)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDEE 24 (503)
T ss_dssp EEEEEEEECSSEEEEEEEETT
T ss_pred cEEEEEEeCCcceEEEEECCC
Confidence 478999999999999999743
No 109
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=64.10 E-value=3.3 Score=44.53 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.3
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 005955 36 GTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (667)
..++|||+|||++++++++.
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~ 21 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTL 21 (495)
T ss_dssp -CEEEEEECSSEEEEEEECT
T ss_pred cEEEEEeeCCcceEEEEECC
Confidence 47899999999999999864
No 110
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=61.35 E-value=4.8 Score=43.40 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
+.+++|||+|||++++++++.
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~ 24 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDR 24 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEEcCCCceEEEEECC
Confidence 358999999999999999874
No 111
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=61.34 E-value=4.9 Score=39.62 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.4
Q ss_pred CCcEEEEEcCccceEEEEEECCe
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNGH 57 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~ 57 (667)
....+|||+|+|.+++++.+++.
T Consensus 19 ~~~~iGIDiGsTt~K~V~~~~~~ 41 (287)
T 2ews_A 19 SHMKVGIDAGGTLIKIVQEQDNQ 41 (287)
T ss_dssp --CEEEEEECSSEEEEEEECSSC
T ss_pred CCeEEEEEEChhhEEEEEEcCCE
Confidence 35789999999999999986553
No 112
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=61.16 E-value=4.2 Score=35.84 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.6
Q ss_pred cEEEEEcCccceEEEEEECC
Q 005955 37 TVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~g 56 (667)
.++|||+|+..|++|+.+..
T Consensus 4 riLGiDpG~~riGvAv~d~~ 23 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEM 23 (150)
T ss_dssp EEEEEEECSSEEEEEEECTT
T ss_pred EEEEEEccCCEEEEEEEECC
Confidence 58999999999999998643
No 113
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=60.46 E-value=4.5 Score=43.53 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.8
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 005955 36 GTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (667)
..++|||+|||++++++++.
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~ 22 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDR 22 (497)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEecCCchhEEEEECC
Confidence 47899999999999999864
No 114
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=60.15 E-value=4.6 Score=44.30 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.3
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
+.+++|||+|||++++++++.
T Consensus 4 ~~~~lgIDiGTts~Ka~l~d~ 24 (572)
T 3jvp_A 4 TKYTIGVDYGTESGRAVLIDL 24 (572)
T ss_dssp -CEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEecCCcceEEEEEEC
Confidence 358999999999999999974
No 115
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=59.40 E-value=22 Score=41.25 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHc-CC--ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 184 NDAQRQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~A-Gl--~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
...-.+.+++|...- ++ +++.++|+..|++++..+.. +.+++.+=+|.|+=-+.+...
T Consensus 630 g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~---~~~~iglIlGTG~na~y~e~~ 690 (917)
T 1cza_N 630 GHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEE---PTCEVGLIVGTGSNACYMEEM 690 (917)
T ss_dssp TSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEET
T ss_pred CCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCC---CCcEEEEEEeCCeeEEEEEcC
Confidence 455667777877643 45 58899999999988776653 446777778888776666553
No 116
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.77 E-value=60 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=42.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 005955 593 DKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 652 (667)
Q Consensus 593 ~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~~~ 652 (667)
.++-..+++.+...|++-.+-++. ..+.++.++..++.-...+...++++-+++||
T Consensus 61 ~vfv~~~~~ea~~~L~~~~e~ie~----~i~~le~~~~~l~~~l~~lk~~l~~~~~~~~~ 116 (117)
T 2zqm_A 61 TLIVKTTKDKAVAELKEKIETLEV----RLNALERQEKKLNEKLKELTAQIQSALRPPTA 116 (117)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 334445677788888877777766 47788999999999999999999998876554
No 117
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=56.41 E-value=1.1e+02 Score=31.83 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred cccCCcEEEEEcCccceEEEEEE-CCeEEEEecCCCCcccceEEEecCCceeecHHHHHhhhhCCchhHHHHHHHhCCCC
Q 005955 32 ATKLGTVIGIDLGTTYSCVGVYK-NGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKF 110 (667)
Q Consensus 32 ~~~~~~viGID~GTt~s~va~~~-~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~ 110 (667)
+.+.+.+++||+|.||.+|+.++ .|. +...+....+|. .++
T Consensus 55 G~E~G~~LAlDlGGTn~RV~~V~l~g~---~~~~~~~~~ip~-------------------------------~~~---- 96 (445)
T 3hm8_A 55 GSERGDFLALDLGGTNFRVLLVRVTTG---VQITSEIYSIPE-------------------------------TVA---- 96 (445)
T ss_dssp SCCCEEEEEEEESSSSEEEEEEEESSS---EEEEEEEECCCH-------------------------------HHH----
T ss_pred CceeeEEEEEEecCCeEEEEEEEECCc---eEEEEEEeccCc-------------------------------ccc----
Q ss_pred CCHHHHHhhccCCeEEEccCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHhc---CCCCcEEEEeCCC-----
Q 005955 111 EDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG---KKIKDAVVTVPAY----- 182 (667)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ev~~~~L~~l~~~a~~~~~---~~~~~~viTVPa~----- 182 (667)
.| +.+++...+-..|.+..+.+-. .-.-...++.|..
T Consensus 97 ------------------------------~g-----~~~~LFd~Ia~~i~~fl~~~~~~~~~lplGftFSFP~~Q~sl~ 141 (445)
T 3hm8_A 97 ------------------------------QG-----SGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLD 141 (445)
T ss_dssp ------------------------------TS-----BHHHHHHHHHHHHHHHHHHHTCTTCCCCEEEEECSCEECSSTT
T ss_pred ------------------------------CC-----CHHHHHHHHHHHHHHHHHHhCcccccCcceEEEeeeeEeccCC
Q ss_pred ------CC----------HHHHHHHHHHHHHcC---CceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEE
Q 005955 183 ------FN----------DAQRQATKDAGIIAG---LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 183 ------~~----------~~qr~~l~~Aa~~AG---l~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (667)
|+ ..-.+.+++|...-| ++++.++|+.+|+.++..+.... +.+-+=+|.||=-+.+.+
T Consensus 142 ~g~Li~wtKGF~~~~~~G~dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~~~---~~iglIlGTGtNa~y~e~ 218 (445)
T 3hm8_A 142 QGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPR---CEIGLIVGTGTNACYMEE 218 (445)
T ss_dssp CCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTCTT---EEEEEEESSSEEEEEEEE
T ss_pred ceEEEEeeccccCCCCCCCcHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCCCC---ceEEEEEeCCceEEEEEe
No 118
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=56.39 E-value=1.6e+02 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred CcceEEEecCcc-CcHHHHHHHHhHc
Q 005955 362 QIDEIVLVGGST-RIPKVQQLLKDYF 386 (667)
Q Consensus 362 ~i~~ViLvGG~s-r~p~i~~~l~~~f 386 (667)
.+|.|+++||-+ +.+.+++.+.+.+
T Consensus 323 ~vDaIVfTGGIgEns~~vr~~I~~~l 348 (398)
T 4ijn_A 323 RTDVISFTAGVGENVPPVRRDALAGL 348 (398)
T ss_dssp SCCEEEEEHHHHHHCHHHHHHHHTTC
T ss_pred CCcEEEECCccccccHHHHHHHHHHH
Confidence 589999999988 6788999998876
No 119
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=55.33 E-value=6.2 Score=42.46 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.9
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 005955 36 GTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (667)
.+++|||+|||++++++++.
T Consensus 6 ~~~lgIDiGtts~k~~l~d~ 25 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQ 25 (501)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEEeCccceEEEEEcC
Confidence 47999999999999999864
No 120
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=52.73 E-value=7.6 Score=41.95 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=17.4
Q ss_pred cEEEEEcCccceEEEEEEC
Q 005955 37 TVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (667)
.++|||+|||++++++++.
T Consensus 27 ~~lgIDiGtts~k~~l~d~ 45 (520)
T 4e1j_A 27 YILAIDQGTTSTRAIVFDG 45 (520)
T ss_dssp EEEEEEECSSEEEEEEECT
T ss_pred eEEEEEeCCcceEEEEECC
Confidence 7999999999999999863
No 121
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=52.33 E-value=17 Score=32.25 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=16.8
Q ss_pred CcEEEEEcCccceEEEEEE
Q 005955 36 GTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (667)
+.++|||-|++++..++.+
T Consensus 1 m~ILGIDPGl~~tG~gvi~ 19 (158)
T 1hjr_A 1 AIILGIDPGSRVTGYGVIR 19 (158)
T ss_dssp CEEEEEECCSSEEEEEEEE
T ss_pred CEEEEEccCCCCeeEEEEE
Confidence 3589999999999999885
No 122
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=52.03 E-value=19 Score=35.19 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=33.1
Q ss_pred CcceEEEecCccCcHHHHHHHHhHcCCC------CCCCCCCchhHHHhHHHHhh
Q 005955 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~i~~~l~~~f~~~------~v~~~~~p~~avA~GAa~~a 409 (667)
+++.|+|.||.+..+.+.+.+++.+... ++......+.+.++||+..+
T Consensus 233 ~p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 233 DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHHHHHHHHH
Confidence 3567999999887788888888777332 12222334568999999876
No 123
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=49.63 E-value=27 Score=36.78 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=28.2
Q ss_pred ceeeeecchHHHHHHh-----hcccC-----------CCceEEEEEEcCCceeEEEEEE
Q 005955 201 NVARIINEPTAAAIAY-----GLDKK-----------GGEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 201 ~~~~li~Ep~AaAl~y-----~~~~~-----------~~~~~vlVvD~GggT~dvsv~~ 243 (667)
..+++|+-.+=|.+.| .+..- .....++|+|+|||+|.++...
T Consensus 150 ~~v~VIsG~eEa~y~wl~vn~~lg~~~~~~~~~~~~~~~~~t~gvlDlGGgStqi~~~~ 208 (456)
T 3cj1_A 150 RGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFET 208 (456)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTSCCEETTEECSSCCCCCEEEEECSSEEEEEEEC
T ss_pred CceEEcCchHHhhhhHHHHHhhhcccccccccccccccCCCceEEEEcCCCceEEEecc
Confidence 3467777666665544 22211 0135689999999999999874
No 124
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=48.22 E-value=8.9 Score=40.99 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q 005955 38 VIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 38 viGID~GTt~s~va~~~~ 55 (667)
++|||+|||++++++++.
T Consensus 2 ~lgiDiGtt~~k~~l~d~ 19 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_dssp EEEEEECSSEEEEEEECT
T ss_pred EEEEEecCcccEEEEECC
Confidence 699999999999999863
No 125
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=47.25 E-value=9.6 Score=40.98 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=17.2
Q ss_pred cEEEEEcCccceEEEEEEC
Q 005955 37 TVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (667)
+++|||+|||++++++++.
T Consensus 3 ~~lgiDiGtts~k~~l~d~ 21 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDH 21 (504)
T ss_dssp EEEEEEECSSEEEEEEECT
T ss_pred EEEEEecCCcceEEEEECC
Confidence 6899999999999999864
No 126
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=46.04 E-value=12 Score=36.20 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.5
Q ss_pred hcccCCcEEEEEcCccceEEEEEE
Q 005955 31 EATKLGTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 31 ~~~~~~~viGID~GTt~s~va~~~ 54 (667)
++.+.++++|||+|.|++++++++
T Consensus 7 ~~~~~~~~lgidiggt~i~~~l~d 30 (267)
T 1woq_A 7 KSHKNAPLIGIDIGGTGIKGGIVD 30 (267)
T ss_dssp ----CCCEEEEEECSSEEEEEEEE
T ss_pred hcCCCCEEEEEEECCCEEEEEEEE
Confidence 445557899999999999999997
No 127
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=45.97 E-value=1.5e+02 Score=25.93 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHhhHhH-HHHHHhhccHHHH------HHHHHHhhcchhhhhccCChHHHHHHHHHH----HHHH
Q 005955 543 SQEEIDRMVREAEEFAEEDKKV-KEKIDARNSLETY------VYNMKNQINDKDKLADKLESDEKDKIETAV----KEAL 611 (667)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~d~~~-~~~~~a~n~LE~~------i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l----~~~~ 611 (667)
.++++++..+-...|...|..+ .......++|+.. +.+|.+....++.... ...+-..++-..+ ..+.
T Consensus 30 ~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~-~d~Ell~eL~~~Ck~~qp~i~ 108 (158)
T 1naf_A 30 HPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAG-SSEDLMKELYQRCERMRPTLF 108 (158)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC------CCTTHHHHHHHHHHTHHHHHH
T ss_pred ChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc-ccHHHHHHHHHHHHHHHHHHH
Confidence 4566777777677777666442 2233344455433 2222222211110000 0112222333333 3445
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 005955 612 EWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTESS 658 (667)
Q Consensus 612 ~Wl~~~~~~~~~~~~~kl~~l~~~~~~i~~r~~e~~~~~~~~~~~~~ 658 (667)
.|+.+. .+-++.-.++-.+..-+..++.||..-.+|.+..|....
T Consensus 109 ~Li~e~--~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~~~ 153 (158)
T 1naf_A 109 RLASDT--EDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATA 153 (158)
T ss_dssp HHHHHC--CSCHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHc--cCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCcccC
Confidence 666543 134556678889999999999999887777766655443
No 128
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=44.29 E-value=15 Score=32.78 Aligned_cols=19 Identities=42% Similarity=0.433 Sum_probs=16.8
Q ss_pred CcEEEEEcCccceEEEEEE
Q 005955 36 GTVIGIDLGTTYSCVGVYK 54 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (667)
|.++|||-|++++..++.+
T Consensus 1 MrILGIDPGl~~tG~gvi~ 19 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVA 19 (166)
T ss_dssp CEEEEEECCSSEEEEEEEE
T ss_pred CEEEEEccccCceEEEEEE
Confidence 3689999999999999875
No 129
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=42.99 E-value=51 Score=32.55 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=33.3
Q ss_pred cCcceEEEecCccCc-----HHHHHHHHhHcCC------CCCCCCCCchhHHHhHHHHhhhh
Q 005955 361 NQIDEIVLVGGSTRI-----PKVQQLLKDYFDG------KEPNKGVNPDEAVAYGAAVQGGI 411 (667)
Q Consensus 361 ~~i~~ViLvGG~sr~-----p~i~~~l~~~f~~------~~v~~~~~p~~avA~GAa~~aa~ 411 (667)
-+++.|+|-||.++. +.+++.+++.+.. .++....-.+.+.++|||.++..
T Consensus 238 ~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~ 299 (310)
T 3htv_A 238 FDPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQ 299 (310)
T ss_dssp HCCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHH
T ss_pred hCCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 346789999998875 4577777766521 11222223467999999988753
No 130
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=42.71 E-value=17 Score=35.30 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=38.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhh
Q 005955 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (667)
Q Consensus 330 tr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~a 409 (667)
-++..+.+-..++......|+..+++..-....--.|+++||.+. .+ ...++ .. ...+| ..+-.|..+..
T Consensus 181 g~nT~~ai~sGi~~g~~g~i~~~i~~~~~e~~~~~~vi~TGG~a~--~l----~~~~~-~~--~~~~~-~LvL~GL~~i~ 250 (268)
T 2h3g_X 181 GKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGLAK--LI----SEESN-VI--DVVDP-FLTLKGLYMLY 250 (268)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEESTTHH--HH----HHHCS-SC--SEECT-THHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HH----HhhCC-CC--CEECc-chHHHHHHHHH
Confidence 445556666666666666665555442111011236999999854 34 44442 11 22344 36777888776
Q ss_pred hh
Q 005955 410 GI 411 (667)
Q Consensus 410 a~ 411 (667)
..
T Consensus 251 ~~ 252 (268)
T 2h3g_X 251 ER 252 (268)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 131
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=42.38 E-value=82 Score=33.15 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcC---CceeeeecchHHHHHHhhcccCCCceEEEEEEcCCceeEEEEEEE
Q 005955 184 NDAQRQATKDAGIIAG---LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (667)
Q Consensus 184 ~~~qr~~l~~Aa~~AG---l~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (667)
...-.+.+++|.+.-| ++++.++|+.+|..++..+.. +.+.+-+=+|.||=-+.+-+.
T Consensus 183 G~DVv~lL~~al~r~g~~~v~v~AlvNDTVgTL~s~aY~~---~~~~iGlI~GTGtNa~Y~E~~ 243 (470)
T 3f9m_A 183 GNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYED---HQCEVGMIVGTGCNACYMEEM 243 (470)
T ss_dssp TSBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEEG
T ss_pred CccHHHHHHHHHHhcCCCCCcEEEEEEcCHHHHHhcccCC---CCceEEEEEecCCceEEeeec
Confidence 3455778888988877 357889999999888766543 346666778888876655554
No 132
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=41.85 E-value=44 Score=36.64 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=56.3
Q ss_pred eEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHH-hHcCCCC---CCCCCCchhH
Q 005955 325 FSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK-DYFDGKE---PNKGVNPDEA 400 (667)
Q Consensus 325 ~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~-~~f~~~~---v~~~~~p~~a 400 (667)
-.+.||..++.++.. .-..+..-++-+|+++++...+|+.|+|.||++.-=-+.+.+. -.+|... +...-| +
T Consensus 498 ~~i~itq~DIr~~ql-AKaAi~agi~~Ll~~~gi~~~di~~v~lAGaFG~~l~~~~a~~iGllP~~~~~ki~~vGN---~ 573 (631)
T 3zyy_X 498 KDIVITEADIQNLIR-AKAAIFAGVRTMLAMVDLPLEAIDRVIIAGGFGKYLNIKDAITIGLLPDIDINKFSYVGN---S 573 (631)
T ss_dssp SCEEEEHHHHHHHHH-HHHHHHHHHHHHHHHTTCCGGGCCEEEEESSSCSEEEHHHHHHHTSSCCSCGGGEEECSC---H
T ss_pred CcEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccCCHHHHhhcCCCCCccccCEEEECc---H
Confidence 357889999988643 2334566778889999999999999999999998666666654 3445432 222234 6
Q ss_pred HHhHHHHhh
Q 005955 401 VAYGAAVQG 409 (667)
Q Consensus 401 vA~GAa~~a 409 (667)
.-.||.+..
T Consensus 574 sl~GA~~~L 582 (631)
T 3zyy_X 574 SLKGARKAL 582 (631)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666776543
No 133
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=41.83 E-value=13 Score=37.11 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.7
Q ss_pred hcccCCcEEEEEcCccceEEEEEEC
Q 005955 31 EATKLGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 31 ~~~~~~~viGID~GTt~s~va~~~~ 55 (667)
|.+....++|||+|.|++++++++.
T Consensus 2 M~~~~~~~lgiDiGgt~i~~~l~d~ 26 (310)
T 3htv_A 2 MQKQHNVVAGVDMGATHIRFCLRTA 26 (310)
T ss_dssp --CCEEEEEEEEECSSEEEEEEEET
T ss_pred CCCCCCEEEEEEeCCCEEEEEEECC
Confidence 3444568999999999999999874
No 134
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=40.74 E-value=3.2e+02 Score=28.07 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.9
Q ss_pred cCcceEEEecCcc-CcHHHHHHHHhHc
Q 005955 361 NQIDEIVLVGGST-RIPKVQQLLKDYF 386 (667)
Q Consensus 361 ~~i~~ViLvGG~s-r~p~i~~~l~~~f 386 (667)
..+|.|+++||-+ +++.+++.+.+.+
T Consensus 329 ggvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 329 HRLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp SSCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred CCCCEEEECccccccCHHHHHHHHhhH
Confidence 4599999999999 9999999999876
No 135
>1t0c_A Insulin; type I beta-turn, BEND, type III' beta-turn, hormone/growth factor complex; NMR {Homo sapiens}
Probab=40.57 E-value=9.9 Score=22.12 Aligned_cols=9 Identities=67% Similarity=1.343 Sum_probs=6.8
Q ss_pred cCCCCCCCC
Q 005955 647 SGGAPGAGT 655 (667)
Q Consensus 647 ~~~~~~~~~ 655 (667)
-||+||+|+
T Consensus 12 lgggpgags 20 (31)
T 1t0c_A 12 LGGGPGAGS 20 (31)
T ss_dssp CCCSTTSSS
T ss_pred ecCCCCccc
Confidence 478888886
No 136
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=40.26 E-value=50 Score=33.76 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=33.6
Q ss_pred CcceEEEecCccCcHH-HHHHHHhHcCCC---CCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRIPK-VQQLLKDYFDGK---EPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p~-i~~~l~~~f~~~---~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|.||.+..+. +.+.+++.+... .+........+.++||+..+.
T Consensus 295 ~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~~~~~~a~~~GAa~l~~ 347 (381)
T 1saz_A 295 EVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPGSNEEKALALSALRVLR 347 (381)
T ss_dssp CCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEBCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEecCcchhHHHHHHHHHHc
Confidence 5789999999987544 778888877322 122222334699999998764
No 137
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=39.49 E-value=23 Score=36.45 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=19.5
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKNG 56 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (667)
|+.++|||+|.|++++++++.+
T Consensus 1 m~~vlgidiGgt~ik~al~d~~ 22 (381)
T 1saz_A 1 MFRILTINPGSTSTKLSIFEDE 22 (381)
T ss_dssp CCEEEEEEECSSEEEEEEEETT
T ss_pred CCeEEEEECCccceeEEEEecc
Confidence 4578999999999999999865
No 138
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=39.24 E-value=1.3e+02 Score=24.82 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhccHHHHHHHHHHhhcchhhhhcc-CChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005955 549 RMVREAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADK-LESDEKDKIETAVKEALEWLDDNQSAEKEDYEE 627 (667)
Q Consensus 549 ~~~~~~~~~~~~d~~~~~~~~a~n~LE~~i~~~~~~l~~~~~~~~~-~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~ 627 (667)
.+.++...+..+=-+.-...+-...|+-|...+.-.+.- +... ..+..++.|...+. +|..
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a---lk~e~~~~~~k~~lr~K~~---------------eYl~ 74 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV---VKYEAQGDKAKQSIRAKCT---------------EYLD 74 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---HHTSCCCHHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH---HHhccCCHHHHHHHHHHHH---------------HHHH
Q ss_pred HHHHHHHHHHHHH-HHHHhhcCCC---CCCCCCCCCCCCC
Q 005955 628 KLKEVEAVCNPII-TAVYQRSGGA---PGAGTESSDDDDS 663 (667)
Q Consensus 628 kl~~l~~~~~~i~-~r~~e~~~~~---~~~~~~~~~~~~~ 663 (667)
+.++|+..+..-. .+-.-...|+ .+.++..+|+++|
T Consensus 75 RAE~LK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (117)
T 2cpt_A 75 RAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGSGP 114 (117)
T ss_dssp HHHHHHHHHHHHSSCCCCCSSSCCCCCSSCCCSCCCCCCC
T ss_pred HHHHHHHHHhhhccccccccccCccccccCCCCCCCCCCC
No 139
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=37.62 E-value=3.4e+02 Score=27.84 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccCcceEEEecCcc-CcHHHHHHHHhHc
Q 005955 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYF 386 (667)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~i~~~l~~~f 386 (667)
...++.+.|-...... ..+|.|+++||-+ +.+.+++.+.+.+
T Consensus 305 f~yri~k~IGa~~a~L----ggvDaiVFTgGIGEns~~vR~~i~~~l 347 (408)
T 1g99_A 305 FAYKVKKFIGEYSAVL----NGADAVVFTAGIGENSASIRKRILTGL 347 (408)
T ss_dssp HHHHHHHHHHHHHHHT----TSCSEEEEEHHHHHHCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhh----CCCCEEEECccccccCHHHHHHHHhhh
Confidence 3344444444443332 3489999999999 9999999999876
No 140
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=36.33 E-value=98 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.0
Q ss_pred CceEEEEEEcCCceeEEEEEEEeCC
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (667)
....+|.+|+||.++-+.+++..+.
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~ 102 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGN 102 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESS
T ss_pred cceEEEEEEecCCeEEEEEEEECCC
Confidence 4567999999999999999999765
No 141
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=36.28 E-value=49 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=17.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhcC
Q 005955 593 DKLESDEKDKIETAVKEALEWLDDN 617 (667)
Q Consensus 593 ~~~~~~~~~~i~~~l~~~~~Wl~~~ 617 (667)
+...-++.+.-.+.+++.++||..+
T Consensus 39 dssdmqeveiwtnrikeledwlwge 63 (67)
T 2nr5_A 39 DSSDMQEVEIWTNRIKELEDWLWGE 63 (67)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHhhcC
Confidence 3334456677789999999999875
No 142
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=35.98 E-value=17 Score=39.88 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCc--cCcceEEEecCccCcHHHHHHHHhHc
Q 005955 340 DLFRKTMGPVKKAMEDAGLEK--NQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
|+=..|++-|..+-.....++ .-.+.|++|||++.+|.+.-.|.+.+
T Consensus 476 pLdkAIi~SIt~a~~~~d~~k~~~~y~nilivGggski~g~~~~L~dri 524 (655)
T 4am6_A 476 PLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRI 524 (655)
T ss_dssp CHHHHHHHHHHHHHHTSCGGGHHHHHTCEEEESTTCCCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhccccHHHHHHHhhcEEEEcCcccCccHHHHHHHHH
Confidence 333444444544333222222 33578999999999999999999988
No 143
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=35.89 E-value=14 Score=36.21 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
.++++....+-..+ ...+ ..+++.|+|.||.+.. +.+.+++.+.. +......+..+.+.||++++.
T Consensus 212 ~i~~~~~~~La~~i-~~~~-~~~p~~vvlgGGv~~~--l~~~l~~~l~~-~~~~i~~~~~a~~~GAa~la~ 277 (291)
T 1zxo_A 212 QLVMNSFIAFFRRN-VMQY-DYKQYPVHFIGSIAYC--YKEILQDAARQ-TGIQIGKILQSPMEGLIQYHS 277 (291)
T ss_dssp HHHHHHHHHHHTTT-GGGS-CTTTSCEEECSHHHHH--THHHHHHHTTT-TTCCEEEECSCTHHHHHTTSS
T ss_pred HHHHHHHHHHHHHH-hccc-CCCCceEEEECcHHHH--HHHHHHHHHhc-CCcEEeecCCCHHHHHHHHHH
Confidence 44444444444444 2111 1156789999998876 55667776632 111112345788899998874
No 144
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=35.53 E-value=21 Score=35.75 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHcCCceeeeecchHHHHHHhhcc---------c--CCCceEEEEEEcCCce
Q 005955 196 IIAGLNVARIINEPTAAAIAYGLD---------K--KGGEKNILVFDLGGGT 236 (667)
Q Consensus 196 ~~AGl~~~~li~Ep~AaAl~y~~~---------~--~~~~~~vlVvD~GggT 236 (667)
+..|++.+.+.|+-.|+|++-... . ....+.++++-+|.|-
T Consensus 99 ~~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTGi 150 (332)
T 1sz2_A 99 KNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGL 150 (332)
T ss_dssp HHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSE
T ss_pred HHhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCccc
Confidence 445888788999999999876432 1 1134567888888873
No 145
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=35.48 E-value=79 Score=26.60 Aligned_cols=59 Identities=19% Similarity=0.384 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcC-CCCCHH---HHHHHHHHHHHHHHHH
Q 005955 573 SLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDN-QSAEKE---DYEEKLKEVEAVCNPI 639 (667)
Q Consensus 573 ~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~-~~~~~~---~~~~kl~~l~~~~~~i 639 (667)
.++.++..+-+.|.+.+-++ ..+++...++=.||.+| ...+.+ .|++++.-+++++...
T Consensus 13 ~~~~~~~~mMqqL~SKevLY--------epmKel~~kyP~WLe~nk~~l~~Ed~~RY~kQ~~lv~~I~~~f 75 (126)
T 2wl8_A 13 NILPIMQSIMQNLLSKDVLY--------PSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQF 75 (126)
T ss_dssp -CHHHHHHHHHHHTSHHHHH--------HHHHHHHTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHhhh--------ccHHHHHHHhhHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665555555433222 34677777778888777 333333 3445555555554443
No 146
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=35.33 E-value=21 Score=38.29 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=26.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q 005955 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVAR 204 (667)
Q Consensus 173 ~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~ 204 (667)
..++.-+|..++...-..+.+++...|+++..
T Consensus 131 ~~~I~v~~~~i~~~d~a~~in~a~~~g~~i~~ 162 (607)
T 1nbw_A 131 EGWIVLIDDAVDFLDAVWWLNEALDRGINVVA 162 (607)
T ss_dssp TCEEEEECSSSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCccCHHHHHHHHHHHHHcCCcEEE
Confidence 44555589999999999999999998887654
No 147
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=35.12 E-value=57 Score=34.21 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=26.3
Q ss_pred eeeeecchHHHHHHh-----hcccCC--CceEEEEEEcCCceeEEEEEE
Q 005955 202 VARIINEPTAAAIAY-----GLDKKG--GEKNILVFDLGGGTFDVSILT 243 (667)
Q Consensus 202 ~~~li~Ep~AaAl~y-----~~~~~~--~~~~vlVvD~GggT~dvsv~~ 243 (667)
.+++|+..+-+.++| .+..-. ....+.++|+|||++.++...
T Consensus 151 ~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~ 199 (452)
T 3zx3_A 151 GAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFVP 199 (452)
T ss_dssp EEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSEEEEEECC
T ss_pred ceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCceEEEecc
Confidence 467776665554443 322211 135678999999999998664
No 148
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=34.48 E-value=35 Score=23.07 Aligned_cols=8 Identities=50% Similarity=1.091 Sum_probs=3.1
Q ss_pred cCCCCCCC
Q 005955 647 SGGAPGAG 654 (667)
Q Consensus 647 ~~~~~~~~ 654 (667)
+||+.|+|
T Consensus 28 gggggggg 35 (62)
T 2i7u_A 28 GGGGGGGG 35 (62)
T ss_dssp CSSCSSSC
T ss_pred cCCCCchH
Confidence 34333333
No 149
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.26 E-value=41 Score=32.05 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHhhccHHHHHHHHHHhhcch-hhhhc---cCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 005955 564 VKEKIDARNSLETYVYNMKNQINDK-DKLAD---KLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI 639 (667)
Q Consensus 564 ~~~~~~a~n~LE~~i~~~~~~l~~~-~~~~~---~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i 639 (667)
.....+.+..|..|.-++|..+... +.+.. -+.++=+.++...+.++.+|+...-..-.+.+.....+|+..+.|.
T Consensus 131 ~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~ 210 (243)
T 2a01_A 131 RQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPA 210 (243)
T ss_dssp HHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445566777777766666666543 11222 2345667778888888888886541112223344455555555554
Q ss_pred HHH
Q 005955 640 ITA 642 (667)
Q Consensus 640 ~~r 642 (667)
...
T Consensus 211 ~e~ 213 (243)
T 2a01_A 211 LED 213 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 150
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=33.71 E-value=1.5e+02 Score=31.04 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=22.4
Q ss_pred CceEEEEEEcCCceeEEEEEEEeCCe
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDNGV 248 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (667)
....++.+|+||.++-+.++...+..
T Consensus 59 E~G~~laiDlGGTnirv~lV~~~G~~ 84 (457)
T 2yhx_A 59 QAGSFLAIVMGGGDLEVILISLAGRQ 84 (457)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTE
T ss_pred ccceEEEEEeCCCeEEEEEEEeCCCe
Confidence 45568999999999999999988765
No 151
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=32.95 E-value=26 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=16.7
Q ss_pred cEEEEEcCccceEEEEEE-CCe--EEEE--ecCCCCcccceEEE
Q 005955 37 TVIGIDLGTTYSCVGVYK-NGH--VEII--ANDQGNRITPSWVA 75 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~-~g~--~~ii--~~~~g~~~~Ps~v~ 75 (667)
.++|+|+|..|+|++..+ +|. +..+ +.|+|....+..+.
T Consensus 1 ~iiG~DIGGAn~K~a~~~~~g~~~~~~~~~PlW~~~~~L~~~l~ 44 (334)
T 3cet_A 1 MILGIDIGGANTKITELHENGEFKVHHLYFPMWKNNDKLAEVLK 44 (334)
T ss_dssp CEEEEEEC--CEEEEEECSTTCCEEEEC----------------
T ss_pred CeeEEEecccceeeeeecCCCceEEEEEecCCcCCchHHHHHHH
Confidence 379999999999999875 554 3322 46777555555443
No 152
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=32.94 E-value=32 Score=33.42 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.6
Q ss_pred cEEEEEcCccceEEEEEE-CCe
Q 005955 37 TVIGIDLGTTYSCVGVYK-NGH 57 (667)
Q Consensus 37 ~viGID~GTt~s~va~~~-~g~ 57 (667)
..+.||+|+|+++.++++ ++.
T Consensus 24 M~L~IDiGNT~ik~g~~~~~~~ 45 (271)
T 2f9w_A 24 MILELDCGNSLIKWRVIEGAAR 45 (271)
T ss_dssp EEEEEEECSSCEEEEEEETTTE
T ss_pred cEEEEEeCCCeeEEEEEeCCCE
Confidence 589999999999999998 553
No 153
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.67 E-value=1.2e+02 Score=26.39 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005955 598 DEKDKIETAVKEALEWLDDN---QSAEKEDYEEKLKEVEAVCNPIITAVY 644 (667)
Q Consensus 598 ~~~~~i~~~l~~~~~Wl~~~---~~~~~~~~~~kl~~l~~~~~~i~~r~~ 644 (667)
++|..+...|.++....... .....++|+.|++.++++...+...+.
T Consensus 96 ~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 96 EDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36667777777777666554 134677888888888888887776543
No 154
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=32.13 E-value=67 Score=31.57 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=31.0
Q ss_pred CcceEEEecCccCcH----HHHHHHHhHcCC------------CCCCCCCCchhHHHhHHHHhhh
Q 005955 362 QIDEIVLVGGSTRIP----KVQQLLKDYFDG------------KEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 362 ~i~~ViLvGG~sr~p----~i~~~l~~~f~~------------~~v~~~~~p~~avA~GAa~~aa 410 (667)
+++.|+|-||.++.+ .+++.+.+.... ..+....-.+.|.++||+.++.
T Consensus 224 dPe~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~l~~ 288 (302)
T 3epq_A 224 APXXIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH 288 (302)
T ss_dssp CCSCEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred CchhhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHHHHHH
Confidence 467899999988764 445555554311 0122233446799999998874
No 155
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=30.59 E-value=73 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 336 ~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
++++...+.+...++++|+++++++.+|+.|+.-|++.++ -+.+.+.|
T Consensus 211 ~~~~~~~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~---~d~i~~~l 258 (317)
T 1hnj_A 211 EVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRI---ISATAKKL 258 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHc
Confidence 3444556677888999999999999999999999987654 45678888
No 156
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=29.33 E-value=14 Score=36.34 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=32.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHH-HHcCC-ceeeeecchHHHHHHhhcccCCCceEEEEEEcCCce
Q 005955 172 IKDAVVTVPAYFNDAQRQATKDAG-IIAGL-NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (667)
Q Consensus 172 ~~~~viTVPa~~~~~qr~~l~~Aa-~~AGl-~~~~li~Ep~AaAl~y~~~~~~~~~~vlVvD~GggT 236 (667)
+..+.|++|..- ......+++.. +..++ ..+.+.|+-.||+++-. . ....+++=+|.|.
T Consensus 58 i~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge~----g-~~~~v~v~~GTGi 118 (291)
T 1zxo_A 58 FNAVYFYGAGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGLC----G-QKAGIACILGTGS 118 (291)
T ss_dssp ---CEEECTTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHTT----T-TSCBEEEEESSSE
T ss_pred ccEEEEEcCCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhhc----C-CCCcEEEEeCCCh
Confidence 345778888653 11112333333 33564 35889999999998642 1 2233455577776
No 157
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=27.62 E-value=75 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.8
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 005955 35 LGTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (667)
++.++|||+|.|++++++++.
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~ 48 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVRE 48 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEE
T ss_pred CCeEEEEEEccccEEEEEEec
Confidence 578999999999999999864
No 158
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=27.10 E-value=36 Score=34.66 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.6
Q ss_pred cCCceeeeecchHHHHHH
Q 005955 198 AGLNVARIINEPTAAAIA 215 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~ 215 (667)
.|+..+.+.|+..|+|++
T Consensus 127 ~~~~pv~v~NDa~aaalg 144 (373)
T 2q2r_A 127 FPPGHSAILNDLEAGGFG 144 (373)
T ss_dssp SCTTSEEEEEHHHHHHHH
T ss_pred cCCCCEEEEccHhHHhcc
Confidence 455457899999999988
No 159
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer complex, transferase-replicat complex; HET: DNA; 3.00A {Bacillus phage PHI29} SCOP: a.263.1.1
Probab=27.08 E-value=52 Score=28.80 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCC
Q 005955 621 EKEDYEEKLKEVEAVCNPIITAVYQR---SGGAPGA 653 (667)
Q Consensus 621 ~~~~~~~kl~~l~~~~~~i~~r~~e~---~~~~~~~ 653 (667)
...++..--++.+.+++.+..|+..+ |||+|+|
T Consensus 54 ki~EI~~nTKeaQrvvde~~~~~~Dke~isGGk~qG 89 (230)
T 2ex3_B 54 KIAEIERNTKEVQRLVDEKIKAMKDKEYYAGGKPQG 89 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcceeCCCCCC
Confidence 34556666778888899999998887 7777554
No 160
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=26.69 E-value=1.4e+02 Score=29.74 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=27.8
Q ss_pred cCCceeeeecchHHHHHHhhcccC-CCceEEEEEEcCCceeEEEEE
Q 005955 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (667)
Q Consensus 198 AGl~~~~li~Ep~AaAl~y~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (667)
.|++ +.+.|+..|+|++...... ...+.++++-+|.| +-..++
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii 174 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGII 174 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEE
Confidence 4776 6789999999987543221 13456788888877 334444
No 161
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=26.44 E-value=69 Score=32.96 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchHH-HHHHhhcccCC------Cce------------EEEEEEc
Q 005955 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTA-AAIAYGLDKKG------GEK------------NILVFDL 232 (667)
Q Consensus 172 ~~~~viTVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aAl~y~~~~~~------~~~------------~vlVvD~ 232 (667)
+.++|++.|.. ...---.+.-||..+|.+.+.-+--..| ||++||...-. .+. ..+-+|+
T Consensus 160 V~~Iv~~tPp~-~G~i~p~iL~AA~l~Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~VgIDm 238 (423)
T 4gic_A 160 VPELIMAVPAP-RGELNALVLAAAYISGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQVGIDM 238 (423)
T ss_dssp CSEEEEECCCG-GGCCCHHHHHHHHHHTCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTTBEECC
T ss_pred CCeEEEecCCC-CCCccHHHHHHHHhcCCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCCcCccc
Confidence 46788998973 2222346888999999998888887777 68899876433 111 1256788
Q ss_pred CCceeEEEEEE
Q 005955 233 GGGTFDVSILT 243 (667)
Q Consensus 233 GggT~dvsv~~ 243 (667)
=+|-+++.|+.
T Consensus 239 ~AGPSEilViA 249 (423)
T 4gic_A 239 VAGPSEILVIS 249 (423)
T ss_dssp CCCCCEEEEEE
T ss_pred ccccceEEEEe
Confidence 88888887775
No 162
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=26.37 E-value=2.2e+02 Score=31.08 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=60.9
Q ss_pred eEEEEEEcCCceeEEEEEEEeCCeEEEEEecCCC--CCcchHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHH
Q 005955 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDT--HLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERA 302 (667)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~--~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 302 (667)
.+=+.+|+|..|+-+.++....+..--.....+. ..|.+-+++.-+.. +
T Consensus 206 ~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~-------~---------------------- 256 (631)
T 3zyy_X 206 VFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVD-------E---------------------- 256 (631)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHH-------H----------------------
T ss_pred ceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHh-------c----------------------
Confidence 3458899999999999998877754333333223 35555444432211 0
Q ss_pred HHHhcCCcceEEeeecccCCcceEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHH
Q 005955 303 KRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK 377 (667)
Q Consensus 303 K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~ 377 (667)
+..-.+++-+-+++.+-+.+.++++++++.+.+|..+.++|-.+-.-+
T Consensus 257 ---------------------------~~~g~~~L~~~v~~~in~li~~l~~~~~i~~~~I~~~~v~GNt~M~hL 304 (631)
T 3zyy_X 257 ---------------------------NPDGAEKLRKAVLSTINELIFQLCKEHGVEKKEIMAAVVAGNTTMTHL 304 (631)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECHHHHHH
T ss_pred ---------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeeEEEEEccHHHHHH
Confidence 011123344445566677788888889999999999999987644333
No 163
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=26.24 E-value=46 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 005955 175 AVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (667)
Q Consensus 175 ~viTVPa~~~~~qr~~l~~Aa~~AGl~~ 202 (667)
-.++.|+.++..+|..+.+.|+..||..
T Consensus 34 ~~l~FP~sLs~~eR~~IH~lA~~~GL~h 61 (86)
T 1msz_A 34 MQLEFPPSLNSHDRLRVHQIAEEHGLRH 61 (86)
T ss_dssp SEEEECTTCCSHHHHHHHHHHHHTTEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 4688999999999999999999999864
No 164
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=25.60 E-value=33 Score=34.44 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=18.0
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 005955 36 GTVIGIDLGTTYSCVGVYKN 55 (667)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (667)
.+++|||+|+|++++++++.
T Consensus 30 ~~~lgiDiGgt~i~~~l~d~ 49 (343)
T 2yhw_A 30 LSALAVDLGGTNLRVAIVSM 49 (343)
T ss_dssp EEEEEEEECSSEEEEEEEET
T ss_pred cEEEEEEECCCEEEEEEECC
Confidence 57999999999999999874
No 165
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=25.14 E-value=56 Score=32.05 Aligned_cols=44 Identities=30% Similarity=0.341 Sum_probs=32.1
Q ss_pred ceEEEecCccCcHHHHHHHHhHcCCCCCCCCCCchhHHHhHHHHhhh
Q 005955 364 DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (667)
Q Consensus 364 ~~ViLvGG~sr~p~i~~~l~~~f~~~~v~~~~~p~~avA~GAa~~aa 410 (667)
..|.|+|........+..|+. + +.++ ...+++.++..|....+.
T Consensus 248 ~~v~LiG~~~L~~~Y~~AL~~-~-G~~~-~~~d~~~~~~~GL~~~~~ 291 (295)
T 3nuw_A 248 QAISLVAGSSLTSRYQQAFAA-I-GREV-SAVAGDTAFQTGIRSIAY 291 (295)
T ss_dssp SCEEEEECHHHHHHHHHHHHH-T-TCCE-EEEEHHHHHHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHHHHHH-c-CCCc-eecCHHHHHHHHHHHHHH
Confidence 469999999888888888865 4 5543 234788888888765443
No 166
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=24.23 E-value=99 Score=30.41 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 337 l~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
+++-....+...++++|+++++++.+|+.|+.-|++.++ -+.+.+.|
T Consensus 214 ~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~d~~~~~l 260 (322)
T 1ub7_A 214 VFKFAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRI---IDAARERL 260 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHc
Confidence 334445667788999999999999999999999987654 34677777
No 167
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=23.81 E-value=5.8e+02 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.1
Q ss_pred CcceEEEecCccC-cHHHHHHHHhHc
Q 005955 362 QIDEIVLVGGSTR-IPKVQQLLKDYF 386 (667)
Q Consensus 362 ~i~~ViLvGG~sr-~p~i~~~l~~~f 386 (667)
.+|.|+++||-+. .+.+++.+.+.+
T Consensus 314 ~vDaIVfTGGIgens~~vR~~i~~~l 339 (391)
T 3r9p_A 314 HTDVISFTAGIGENDAAVRRDAVSGM 339 (391)
T ss_dssp SCCEEEEEHHHHHHCHHHHHHHHTTC
T ss_pred CCCEEEECcccccCCHHHHHHHHHHH
Confidence 5899999999886 799999998776
No 168
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=23.37 E-value=1.1e+02 Score=29.68 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCcceEEEecCccCcHHHHHHHHhHc
Q 005955 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (667)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~i~~~l~~~f 386 (667)
+...+.+.+.++++|+++++++.+|+.|++-|+++++ -+.+.+.|
T Consensus 206 ~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~~~~~~~l 250 (309)
T 2ebd_A 206 KVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRI---INALAEKL 250 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHh
Confidence 3445567788999999999999999999999988664 34577777
No 169
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=22.51 E-value=2.1e+02 Score=30.07 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=21.4
Q ss_pred CceEEEEEEcCCceeEEEEEEEeCC
Q 005955 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (667)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (667)
....+|.+|+||.++-|..+++.++
T Consensus 75 E~G~fLAlDlGGTNfRV~~V~L~g~ 99 (470)
T 3f9m_A 75 EVGDFLSLDLGGTNFRVMLVKVGEG 99 (470)
T ss_dssp CCEEEEEEEESSSEEEEEEEEEEC-
T ss_pred cceEEEEEEecCceEEEEEEEECCC
Confidence 3567999999999999999999764
No 170
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=20.78 E-value=1.9e+02 Score=29.16 Aligned_cols=69 Identities=13% Similarity=0.303 Sum_probs=50.8
Q ss_pred hhccHHHHHHHHHHhhcchhhhhccCChHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 005955 570 ARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPI 639 (667)
Q Consensus 570 a~n~LE~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~Wl~~~~~~~~~~~~~kl~~l~~~~~~i 639 (667)
|+.-.++++|.+--.+.-.+ +.+.+...+.++.+..|.+..+||..-.++...+++.....+....++.
T Consensus 160 A~~l~~~~~y~Itv~~~~~~-~~~a~~~g~l~~a~~~l~~v~~~l~kv~d~FkaeL~~aa~~a~~aYeaa 228 (412)
T 2ra1_A 160 AQALRDRLIYDITVAMKARE-AQDAVKAGNLDKAKAALDQVNQYVSKVTDAFKAELQKAAQDAKAAYEAA 228 (412)
T ss_dssp HHHHHHHTHHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHGGGCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhccc
Confidence 34445556666665555433 6677777888999999999999999887788888888887776655543
Done!