BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005956
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
KK E ++ P+S ++ VK N ++FT + H + ++KFSP
Sbjct: 6 KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 55
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
+G +LAS D +++IW DG F
Sbjct: 56 NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 80
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
+ + GHK + D+AWS +SN L+S S DKT+++W V +CL H N
Sbjct: 81 ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
YV C FNP N +SGS D VRIW V + + D +SA+ + DG +
Sbjct: 131 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 410 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468
S G C + ASG LK D ++ ++FS + + I+ + D+ L++
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 241
Query: 469 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 511
D + + G + A+F+ T GK I+S +D VY+WN
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 212
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 213 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 241
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 279 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 71/346 (20%)
Query: 173 KKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSP 232
KK E ++ P+S ++ VK N ++FT + H + ++KFSP
Sbjct: 8 KKPETEAARAQPT-PSSSATQSKPTPVKPNY--ALKFT-------LAGHTKAVSSVKFSP 57
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
+G +LAS D +++IW DG F
Sbjct: 58 NGEWLASSSADKLIKIWGAY-----------DGKFE------------------------ 82
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHN 350
+ + GHK + D+AWS +SN L+S S DKT+++W V +CL H N
Sbjct: 83 ----------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVG 409
YV C FNP N +SGS D VRIW V + + D +SA+ + DG +
Sbjct: 133 YVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 410 SITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468
S G C + ASG LK D ++ ++FS + + I+ + D+ L++
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-GKYILAATLDNTLKLW 243
Query: 469 DGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVWN 511
D + + G + A+F+ T GK I+S +D VY+WN
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 214
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 215 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 243
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 281 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 336
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
V +CL H NYV C FNP N +SGS D VRIW G+C K +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450
D +SA+ + DG + S G C + ASG LK D ++ ++FS
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 451 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 507
+ + I+ + D+ L++ D + + G + A+F+ T GK I+S +D V
Sbjct: 206 N-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 508 YVWN 511
Y+WN
Sbjct: 265 YIWN 268
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDDDN--------- 195
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
P F ++ SP N Y+L+ ++D T+++W
Sbjct: 196 ---------------PPVSF-VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 260 EDNMVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 67/304 (22%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
V +CL H NYV C FNP N +SGS D VRIW G+C K +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTL---PAHS 152
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450
D +SA+ + DG + S G C + ASG LK D ++ ++FS
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSP 205
Query: 451 DESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRV 507
+ + I+ + D+ L++ D + + G + A+F+ T GK I+S +D V
Sbjct: 206 N-GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 508 YVWN 511
Y+WN
Sbjct: 265 YIWN 268
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D +++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNDLKLW 222
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 75
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 76 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 110
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 221
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 511 N 511
N
Sbjct: 282 N 282
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 207
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 208 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 236
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 274 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 329
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 263 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 59 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 511 N 511
N
Sbjct: 265 N 265
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 190
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 191 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 219
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 257 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 54
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 55 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 200
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 511 N 511
N
Sbjct: 261 N 261
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 186
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 187 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 215
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 253 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 263 EDNLVYIWN--LQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 63
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 64 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 98
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 209
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 511 N 511
N
Sbjct: 270 N 270
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 195
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 196 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 224
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 262 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 64
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 65 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 210
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 511 N 511
N
Sbjct: 271 N 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 196
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 197 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 225
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 263 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 59
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 60 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 94
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 205
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 511 N 511
N
Sbjct: 266 N 266
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 191
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 192 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 220
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 258 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 58
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 59 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 204
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 511 N 511
N
Sbjct: 265 N 265
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 190
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 191 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 219
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 257 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 57
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 58 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 203
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 511 N 511
N
Sbjct: 264 N 264
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 189
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 190 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 218
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGG----FGSNAXXXXXXXXXXXS 283
+KFSP+G+Y+ + D +++W S K++T +N S
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
V I + Q +E +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 256 EDNLVYIWN--LQTKE-IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LAS D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 61/301 (20%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+ H + ++KFSP+G +LA+ D +++IW DG F
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY-----------DGKFE--------- 61
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQ 336
+ + GHK + D+AWS +SN L+S S DKT+++W
Sbjct: 62 -------------------------KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 337 VGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVI 394
V +CL H NYV C FNP N +SGS D VRIW V + + D +
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 395 SAICYIPDGKGFIVGSITGTCHFY-KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
SA+ + DG + S G C + ASG LK D ++ ++FS +
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------DNPPVSFVKFSPN-G 207
Query: 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510
+ I+ + D+ L++ D + + G + A+F+ T GK I+S +D VY+W
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 511 N 511
N
Sbjct: 268 N 268
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + AH + + F+ DG + S DG+ RIW T+ K+ DD
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCLKTLIDD----------- 193
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMW 335
+ PV ++ SP N Y+L+ ++D T+++W
Sbjct: 194 --------DNPPVSF------VKFSP-----------------NGKYILAATLDNTLKLW 222
Query: 336 QVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+CL + H Y F+ + +SGS D V IW + K +V
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
+KFSP+G+Y+ + D +++W S K++T G + +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDY-SKGKCLKTYT---GHKNEKYCIFANFSVTGGKWIV 256
Query: 288 VVIPDEVFQI----EESPLQELHGHKGDVLDLA-WSNSNYLLSCSM--DKTVRMWQVGC 339
D + I + +Q+L GH V+ A N + S ++ DKT+++W+ C
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 39/308 (12%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW-----HVTSVAASCKS-----FTDDG 265
Q + H +W + FSPDG+ +AS +D V++W H+ ++ S F+ DG
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 266 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
++A S V + + Q+ LQ L GH V +A+S + +
Sbjct: 357 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
S S DKTV++W + H + V V F+P DD S S D V++W + +
Sbjct: 402 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNGQLL 460
Query: 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444
+ + + PDG+ S T + +G L+ + H + +
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVR 512
Query: 445 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 503
G+ FS D Q I S+D +++ + ++ G S S +F+ G+ I S
Sbjct: 513 GVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASS 569
Query: 504 DCRVYVWN 511
D V +WN
Sbjct: 570 DKTVKLWN 577
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 39/310 (12%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH--------VTSVAASCK--SFTDDG 265
Q + H +W + FSPDG+ +AS +D V++W+ +T ++S + +F+ DG
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 266 GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLL 324
++A S V + + Q+ LQ L GH V +A+S + +
Sbjct: 111 QTIASA-----------SDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQTIA 155
Query: 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
S S DKTV++W + H + V V F+P D S S D V++W + +
Sbjct: 156 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLL 214
Query: 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444
+ + + PDG+ S T + +G L+ + H + +
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVN 266
Query: 445 GIQFSRDESQRIMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 503
G+ F R + Q I S+D +++ + ++ G S S +F+ G+ I S D
Sbjct: 267 GVAF-RPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASD 323
Query: 504 DCRVYVWNYD 513
D V +WN +
Sbjct: 324 DKTVKLWNRN 333
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 146/364 (40%), Gaps = 52/364 (14%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH--------VTSVAASCK--SFTDDG 265
Q + H +W + FSPDG+ +AS +D V++W+ +T ++S + +F+ DG
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 266 G-------------FGSNAXXXXXXXXXXXSSHVPVVIPD-------------EVFQIEE 299
+ N S + PD +++
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 300 SPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358
LQ L GH V +A+S + + S S DKTV++W + H + V V F+
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS 353
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418
P D S S D V++W + + + + + PDG+ S T +
Sbjct: 354 P-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD-GVDVIHKF 477
+G L+ + H + + G+ FS D+ Q I S+D +++ + ++
Sbjct: 413 NRNGQ--LLQTLTGHS------SSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQTL 463
Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEG 536
G S S +F+ G+ I S DD V +WN + +L + +SVR F +G
Sbjct: 464 TG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDG 520
Query: 537 VSVA 540
++A
Sbjct: 521 QTIA 524
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 124/326 (38%), Gaps = 60/326 (18%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 276
++AH + + FSPDG+ +AS +D V++W
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--------------------------- 43
Query: 277 XXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
+ Q+ LQ L GH V +A+S + + S S DKTV++W
Sbjct: 44 ---------------NRNGQL----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84
Query: 336 QVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVIS 395
+ H + V V F+P D S S D V++W + + +
Sbjct: 85 NRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143
Query: 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455
+ + PDG+ S T + +G L+ + H + + G+ FS D Q
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHS------SSVWGVAFSPD-GQT 194
Query: 456 IMITSEDSKLRILD-GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
I S+D +++ + ++ G S S +F+ G+ I S DD V +WN +
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 515 LCFPSSKQKNSVRSCEHFFSEGVSVA 540
+ +S + F +G ++A
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIA 278
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 284
I ++ FSPDG++LA+G ED ++RIW + +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN------------------------------- 154
Query: 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCL 343
++ I L GH+ D+ L + + + L+S S D+TVR+W + QC
Sbjct: 155 -------RKIVMI-------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV--------RDVIS 395
+ VT V +P D Y +GS+D VR+W +V+ D +D +
Sbjct: 201 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 396 AICYIPDGKGFIVGSI 411
++ + DG+ + GS+
Sbjct: 261 SVVFTRDGQSVVSGSL 276
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+Q H+ I++L + P G L SG D VRIW + + S +DG
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 278 XXXXXSSHVPVVIPDEV--FQIE--ESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTV 332
S V + D F +E +S + GHK V + ++ + ++S S+D++V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 333 RMWQV------------GCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
++W + C + H ++V V +D Y +SGS D V W
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFW 337
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 17/188 (9%)
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVG 409
Y+ V F+P D + +G+ D +RIW + +++V + I ++ Y P G + G
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 410 SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469
S T + DL+ + + + +T + S + + I S D +R+ D
Sbjct: 184 SGDRTVRIW-----DLRTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 470 GVD--VIHKFKGLPKSG-----SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522
++ + +SG S S FT G+ ++S D V +WN S +
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295
Query: 523 KNSVRSCE 530
+ +CE
Sbjct: 296 TPNSGTCE 303
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 42/268 (15%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------VAASCK---- 259
T L + +Q H G +++L ++P+ ++ S +DG + +W+ + + C
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 260 -SFTDDG------GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312
+F +G G S ++PV + L GHKG
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS-------------RVLTGHKGYA 160
Query: 313 LDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNY 364
+ L++ S D+T +W V Q +++F H V + N ++ N
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 365 FISGSIDGKVRIWG--VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKA-S 421
FISGS D VR+W + + V + I+++ + PDG+ F GS GTC + +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 422 GNDLKLEKVDFHDRKKTSGNKITGIQFS 449
G+ L++ + DR +T + FS
Sbjct: 281 GHQLQVYNRE-PDRNDNELPIVTSVAFS 307
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 69/435 (15%)
Query: 117 MVDELEQDQMNECVVTLEGESNGFSQSVDKFENPFPECKGVNIKK-----VKKLWKRIIS 171
++ + ++D++N + SNG+ ++ F+ + K ++K W +I
Sbjct: 2 VLSQRQRDELNRAIADYL-RSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 172 MKKR--NVETCMSE-KRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTL 228
++K+ +E+ ++E K + S P K + K+ + E AL H+ + +
Sbjct: 61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYAL------SGHRSPVTRV 114
Query: 229 KFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFTD---DGGFGSNAXXXXXXXXXXXS 283
F P + S ED +++W + + K TD D F + S
Sbjct: 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-----S 169
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA-WSNSNYLLSCSMDKTVRMWQVGCNQC 342
+ + + + D FQ E ++ +HGH +V ++ N ++++S S DKT++MW+V C
Sbjct: 170 ADMTIKLWD--FQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 343 LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYI 400
+ F H +V V+ N D S S D VR+W V K + + R V+ I +
Sbjct: 227 VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460
P+ + TG+ + KK+ + SRD++ ++ S
Sbjct: 286 PESSYSSISEATGS-------------------ETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 461 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DELCFPS 519
L L G D + +G+ F + GK I+S DD + VW+Y ++ C
Sbjct: 327 TGMCLMTLVGHD--NWVRGV---------LFHSGGKFILSCADDKTLRVWDYKNKRCM-- 373
Query: 520 SKQKNSVRSCEHFFS 534
++ + EHF +
Sbjct: 374 ----KTLNAHEHFVT 384
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------- 254
K E Y + H+ + ++ + DG +AS D VR+W V +
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 255 -AASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP---DEVFQIEESP----LQELH 306
C S+ + + S + P ++ D+ ++ + L L
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCLMTLV 335
Query: 307 GHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364
GH V + + S ++LSC+ DKT+R+W +C+ + H ++VT + F+ Y
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-Y 394
Query: 365 FISGSIDGKVRIW 377
++GS+D V++W
Sbjct: 395 VVTGSVDQTVKVW 407
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 163 KKLWKRII-------------SMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEF 209
KK WK I S K N TC++ NS E++ K
Sbjct: 83 KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFG 268
L H+ I ++K++ DG ++ S + V +W+V S + GG
Sbjct: 143 NVL------NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 269 SNAXXXXXXXXXXXSSHV----PVVIPDE-----VFQI-EESPLQELHGHKGDVLDLAWS 318
NA VIP V+QI E++P +L GH G + L ++
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 319 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
++N LLS S D T+R+W G N F H+ + V + + D+ IS S+DG VR+W
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVISCSMDGSVRLW 315
Query: 378 GVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSITGTCHFY 418
+ + ++ + V V I A DG+ + V + G + Y
Sbjct: 316 SLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 159 IKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQE- 217
+K++ KL I+S ++ + + NS A +E Q KK + T + +
Sbjct: 39 LKEIVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP 97
Query: 218 --IQAHKG----CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNA 271
+ A G + L +S DG + +G E+G +R+W+ T + +F
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKW 157
Query: 272 XXXXXXXXXXXSSHVPV---VIPDEV---FQIEESPLQELHG--HKGD---VLDLAWSNS 320
+V + VI V F+++E+ ++ H GD +D+ W +
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 321 NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
+ + + ++Q+ + HH ++ ++FN + +S S DG +RIW
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIW 274
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 360
++ L+GHK + L + + ++S S D T+R+W + C CL V + H V C++F
Sbjct: 289 VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 361 DDNYFISGSIDGKVRIW 377
D+ +SG+ DGK+++W
Sbjct: 345 DNKRIVSGAYDGKIKVW 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN 363
L GH G VL L + + +++ S D TVR+W V + LN HH V ++FN +
Sbjct: 169 LTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NG 224
Query: 364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVI----SAICYIPDGKGFIVGSI-------- 411
++ S D + +W + + +R V+ +A+ + +IV +
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Query: 412 -TGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469
T TC F + +G+ + + + DR SG S D + R+ + LR+L+
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSG--------SSDNTIRLWDIECGACLRVLE 333
Query: 470 G 470
G
Sbjct: 334 G 334
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ ++ H + + S DG++ SG DG +R+W +T+ + + S A
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
S + + + + + + E H + + ++SN ++SC DK V++
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
W + C N H Y+ V +P D + SG DG+ +W + E + + D D+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258
Query: 394 ISAICYIPD 402
I+A+C+ P+
Sbjct: 259 INALCFSPN 267
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 356
L GH G V +A + + +LS S DKT+ MW++ ++ + H ++V+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 357 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
+ D + +SGS DG +R+W G +R V +DV+S + + D + + GS
Sbjct: 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 149
Query: 413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 471
T + N L + K D + ++ ++FS + S I+++ D +++ +
Sbjct: 150 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 472 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
+ K + +G + + + G S G D + +W+ +E
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
H G + T+ SPDG ASGG+DG +W + +T DGG NA
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSPNRY 269
Query: 280 XXXSSHVPV---------VIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMD 329
++ P +I DE+ Q E LAWS + L + D
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327
Query: 330 KTVRMWQV 337
VR+WQV
Sbjct: 328 NLVRVWQV 335
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVT 252
+L +S DG+ L +G D +VR+W VT
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ ++ H + + S DG++ SG DG +R+W +T+ + + S A
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRM 334
S + + + + + + E H + + ++SN ++SC DK V++
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 335 WQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
W + C N H Y+ V +P D + SG DG+ +W + E + + D D+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 235
Query: 394 ISAICYIPD 402
I+A+C+ P+
Sbjct: 236 INALCFSPN 244
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 305 LHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQC------LNVFDHHNYVTCVQ 356
L GH G V +A + + +LS S DKT+ MW++ ++ + H ++V+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 357 FNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
+ D + +SGS DG +R+W G +R V +DV+S + + D + + GS
Sbjct: 71 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLS-VAFSSDNRQIVSGSRD 126
Query: 413 GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGV 471
T + N L + K D + ++ ++FS + S I+++ D +++ +
Sbjct: 127 KTIKLW----NTLGVCKYTVQDESHS--EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 472 DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514
+ K + +G + + + G S G D + +W+ +E
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
H G + T+ SPDG ASGG+DG +W + +T DGG NA
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---GKHLYTLDGGDIINALCFSPNRY 246
Query: 280 XXXSSHVPV---------VIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMD 329
++ P +I DE+ Q E LAWS + L + D
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQ--EVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 304
Query: 330 KTVRMWQV 337
VR+WQV
Sbjct: 305 NLVRVWQV 312
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVT 252
+L +S DG+ L +G D +VR+W VT
Sbjct: 288 SLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
I + L +L GH G V L +++ L+S S D+TVR+W + C +VF+ HN V C
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
V++ I Y ++GS D + +W + E V D + D + + P+ + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
G
Sbjct: 267 RG 268
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 70/188 (37%), Gaps = 34/188 (18%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV-----TSV------AASCKSFTDDG 265
++ H G +W LK++ G L SG D VR+W + T V C +
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 266 GF-----GSNAXXXXXXXXXXXSSHVPVVIPDE--------VFQI-EESP--LQELHGHK 309
GS SS +PD VF EE+P + L GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESS-----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369
V ++ + N ++S S D T+ +W V +CL + H + IS S
Sbjct: 271 ASVRTVS-GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 370 IDGKVRIW 377
D +RIW
Sbjct: 330 XDTTIRIW 337
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 324 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
+S S D T+R+W + + H V + D + +S + DG +R W
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+TC+QF +DNY I+G+ D +R++ K+ +
Sbjct: 125 ITCLQF---EDNYVITGADDKXIRVYDSINKKFL 155
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTC- 354
I + L +L GH G V L +++ L+S S D+TVR+W + C +VF+ HN V C
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 355 --VQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVDWADVRDVISAICYIPDGKGFIVGSI 411
V++ I Y ++GS D + +W + E V D + D + + P+ + VG +
Sbjct: 210 DIVEYKNI--KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVL 266
Query: 412 TG 413
G
Sbjct: 267 RG 268
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 71/188 (37%), Gaps = 34/188 (18%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV-----TSV------AASCKSFTDDG 265
++ H G +W LK++ G L SG D VR+W + T V C +
Sbjct: 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 266 GF-----GSNAXXXXXXXXXXXSSHVPVVIPDE--------VFQI-EESP--LQELHGHK 309
GS SS +PD VF EE+P + L GH
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESS-----VPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369
V ++ + N ++S S D T+ +W V +CL + H + IS S
Sbjct: 271 ASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 370 IDGKVRIW 377
+D +RIW
Sbjct: 330 MDTTIRIW 337
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 324 LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
+S SMD T+R+W + + + H V + D + +S + DG +R W
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385
+TC+QF +DNY I+G+ D +R++ K+ +
Sbjct: 125 ITCLQF---EDNYVITGADDKMIRVYDSINKKFL 155
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 307 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNP-IDD 362
GH DVL +A+S N ++S D +R+W V C L+ H ++V+CV+F+P +D
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 363 NYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG 403
+SG D V++W + R+V D + ++++ PDG
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 301 PLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P + L GH V D+A SN+ N+ +S S D ++R+W + QC F H V V F+
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 359 PIDDNYFISGSIDGKVRIWGV 379
P D+ +SG D +R+W V
Sbjct: 119 P-DNRQIVSGGRDNALRVWNV 138
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 44/235 (18%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
H + ++ FSPD R + SGG D +R+W+V C G
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK---GECMHTLSRGAH------------ 151
Query: 280 XXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC 339
D V + SP LD + ++S D V++W +
Sbjct: 152 -----------TDWVSCVRFSP----------SLD-----APVIVSGGWDNLVKVWDLAT 185
Query: 340 NQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 398
+ + ++ H NYVT V +P D + S DG R+W + + + I+ IC
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453
+ P+ + ++ + + D+ +E H K + I +S D S
Sbjct: 245 FSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
+++ H + ++ SPDG AS +DGV R+W +T
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 53/227 (23%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 266
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
PLQ H+G V +AW SN L + + D+ +R+W V CL
Sbjct: 267 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADVRDVISAICYI 400
+ D H+ V + ++P ISG ++ IW +V + + ++
Sbjct: 315 SAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
PDG + T ++ +L+ +R+K S K + I
Sbjct: 374 PDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 416
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
+G YLA G V++W V + GS + S H I
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 213
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQ----CLNVF- 346
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 347 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 333
Query: 405 GFIVG 409
I G
Sbjct: 334 ELISG 338
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 53/227 (23%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 277
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
PLQ H+G V +AW SN L + + D+ +R+W V CL
Sbjct: 278 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 344 NVFDHHNYVTCVQFNPIDDNYFISGS--IDGKVRIWGV-CEKRVVDWADVRDVISAICYI 400
+ D H+ V + ++P ISG ++ IW +V + + ++
Sbjct: 326 SAVDAHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 384
Query: 401 PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
PDG + T ++ +L+ +R+K S K + I
Sbjct: 385 PDGATVASAAADETLRLWRC----FELDPARRREREKASAAKSSLIH 427
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
+G YLA G V++W V + GS + S H I
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 224
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQ----CLNVF- 346
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 225 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 347 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 344
Query: 405 GFIVG 409
I G
Sbjct: 345 ELISG 349
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 226
MSE + E + K +++ +K C + T + T + ++ H I+
Sbjct: 1 MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 284
+ + D R L S +DG + IW S+T + + +
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
+V D + I +E L GH G + + + N +++ S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
+ Q F H V + P D F+SG+ D ++W G+C + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451
I+AIC+ P+G F GS TC + DL+ ++ IT + FS+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 452 ESQRIMITSED 462
S R+++ D
Sbjct: 281 -SGRLLLAGYD 290
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 419
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 124
Query: 420 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 125 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 178
Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 536
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 537 VSVAV 541
+ A
Sbjct: 239 NAFAT 243
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 50/311 (16%)
Query: 181 MSEKRKPNSEKPKANKMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIW 226
MSE + E + K +++ +K C + T + T + ++ H I+
Sbjct: 1 MSELDQLRQEAEQL-KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSS 284
+ + D R L S +DG + IW S+T + + +
Sbjct: 60 AMHWGTDSRLLLSASQDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 285 HVPVVIPDEVFQIEESPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQ 336
+V D + I +E L GH G + + + N +++ S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 337 VGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVR 391
+ Q F H V + P D F+SG+ D ++W G+C + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHE 226
Query: 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451
I+AIC+ P+G F GS TC + DL+ ++ IT + FS+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK- 280
Query: 452 ESQRIMITSED 462
S R+++ D
Sbjct: 281 -SGRLLLAGYD 290
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
+DG + IW S+T + + ++V D + I
Sbjct: 75 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 419
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 124
Query: 420 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 125 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 178
Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 536
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 537 VSVAV 541
+ A
Sbjct: 239 NAFAT 243
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 26 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSAS 85
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
+DG + IW S+T + + ++V D + I
Sbjct: 86 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 196
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 197 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 252
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 253 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 301
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC-YIPDGKGFIVGSITGTCHFYK 419
D +S S DGK+ IW V +R C Y P G G + C Y
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY- 135
Query: 420 ASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477
+LK + + ++ +G+ ++ +F D +I+ +S D+ + D
Sbjct: 136 ----NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTT 189
Query: 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEG 536
+G MS S + +S D +W+ E +C + S + FF G
Sbjct: 190 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 249
Query: 537 VSVAV 541
+ A
Sbjct: 250 NAFAT 254
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 196 KMEVKQNKKKCMEFT--------------ALYTSQEIQAHKGCIWTLKFSPDGRYLASGG 241
K +++ +K C + T + T + ++ H I+ + + D R L S
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSAS 74
Query: 242 EDGVVRIWHVTSVAASCKSFTDDG--GFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
+DG + IW S+T + + ++V D + I
Sbjct: 75 QDGKLIIW---------DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 300 SPLQE--------LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
+E L GH G + + + N +++ S D T +W + Q F H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 352 -VTCVQFNPIDDNYFISGSIDGKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGF 406
V + P D F+SG+ D ++W G+C + + I+AIC+ P+G F
Sbjct: 186 DVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAF 241
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462
GS TC + DL+ ++ IT + FS+ S R+++ D
Sbjct: 242 ATGSDDATCRLF-----DLRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVP 287
L+++PDGR+LASGG D +V +W S +GG+
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVW---------PSAPGEGGW-------------------- 186
Query: 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVRMWQVGCNQCL 343
PLQ H+G V +AW SN L + + D+ +R+W V CL
Sbjct: 187 ------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 344 NVFDHHNYVTCVQFNP 359
+ D H+ V + ++P
Sbjct: 235 SAVDAHSQVCSILWSP 250
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPD 292
+G YLA G V++W V + GS + S H I
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGH----IHH 133
Query: 293 EVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQC----LNVF- 346
++ E + L GH +V L W+ + +L S D V +W + L F
Sbjct: 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 193
Query: 347 DHHNYVTCVQFNPIDDNYFISG--SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404
H V V + P N +G + D +RIW VC + D + +I + P K
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253
Query: 405 GFIVG 409
I G
Sbjct: 254 ELISG 258
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 201 QNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
QN+ ++ + E++ H + +L SPDG +AS D +R+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)
Query: 182 SEKRKPNSEKPKANKMEVKQNKKKCMEFT--ALYTSQEIQAHKGCIWTLKFSPDGRYLAS 239
S K K E+ K + +E+ Q ++ + T + ++ H + + + D R + S
Sbjct: 22 SLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVS 81
Query: 240 GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEE 299
+DG V +W SFT + S + +
Sbjct: 82 SSQDGKVIVW---------DSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 300 SPL------------QELHGHKGDVLDLAWSNSNY-LLSCSMDKTVRMWQVGCNQCLNVF 346
PL + + H + +++NS+ +L+ S D T +W V Q L F
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 347 DHHNY-VTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDG 403
H V C+ P + N F+SG D K +W + + V + + ++++ Y P G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 404 KGFIVGSITGTCHFY 418
F GS TC Y
Sbjct: 253 DAFASGSDDATCRLY 267
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 205 KCMEFTALYTSQEIQAHKGCIWTLK--FSPDGRYLASGGEDGVVRIWHVT-----SVAAS 257
K + + + T++E C W + ++P G +A GG D ++ +T ++AA
Sbjct: 87 KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK 146
Query: 258 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPL-QELHGHKGDVL--D 314
KS + S +S ++ +E L Q HGH DVL D
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTC---ALWDVESGQLLQSFHGHGADVLCLD 203
Query: 315 LAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372
LA S + N +S DK +W + QC+ F+ H + V V++ P D F SGS D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGSDDA 262
Query: 373 KVRIWGVCEKRVV 385
R++ + R V
Sbjct: 263 TCRLYDLRADREV 275
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 329 DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378
D T+ +W V +++ F H N V+ ++ +P D F SGS D +R+W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 14/171 (8%)
Query: 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGF 406
H N V C+ + D +S S DGKV +W + + A Y P G
Sbjct: 63 HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS----GNKITGIQFSRDESQRIMITSED 462
G + C Y L +K + KK S N ++ F+ + Q I+ S D
Sbjct: 122 ACGGLDNKCSVYP-----LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGD 175
Query: 463 SKLRILD--GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
+ D ++ F G + + + TG +S G D + VW+
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
H+ + TL+ SPDG SG D +R+W
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 55/257 (21%)
Query: 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P + L GH V DLA S N + +S S DKT+R+W + F H + V V F+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 359 PIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTC 415
P D+ +S + ++++W G C+ + + D +S + Y P K +
Sbjct: 128 P-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFA 184
Query: 416 HFYKASGND--LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 473
++ + G D LK+ +F R
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR-------------------------------------- 206
Query: 474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 533
+ FK + + +S S GK+I + G D ++ +W+ L +P + + F
Sbjct: 207 -YTFKAHESNVNHLSIS--PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF 263
Query: 534 SEGVSVAVQWPGIGTEQ 550
+ +QW +GT+Q
Sbjct: 264 NP----KLQWVAVGTDQ 276
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261
F YT +AH+ + L SP+G+Y+A+GG+D + IW + ++ + F
Sbjct: 203 FQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 251
T + H+ ++++ FSPD R + S G + +++W++
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + H + + S DG++ SG DG +R+W + + ++ + S A
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNY---LLSCSMDKTV 332
S + + + + + + + + GH+ V + +S + ++S S DKTV
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 333 RMWQVG-CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391
++W + C + H YV+ V +P D + SG DG V +W + E + + +
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Query: 392 DVISAICYIPD 402
VI A+C+ P+
Sbjct: 603 SVIHALCFSPN 613
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 319 NSNYLLSCSMDKTVRMWQV-------GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371
N++ ++S S DK++ +W++ G Q + H ++V V + D + +SGS D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQ-RRLTGHSHFVEDVVLSS-DGQFALSGSWD 451
Query: 372 GKVRIW----GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427
G++R+W GV +R V +DV+S + + D + + S T + N L
Sbjct: 452 GELRLWDLAAGVSTRRFV--GHTKDVLS-VAFSLDNRQIVSASRDRTIKLW----NTLGE 504
Query: 428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQ 486
K + + + ++ ++FS + Q ++++ D +++ + + + +G
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV 564
Query: 487 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 526
+ + + G S G D V +W+ E S + NSV
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHV 251
+L +S DG L SG DGV+R+W +
Sbjct: 667 SLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS 269
T L+T +Q H +++L+F DG ++ SG D +R+W V + +C
Sbjct: 270 TCLHT---LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--GNC----------- 311
Query: 270 NAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMD 329
+ L GH+ + + N L+S + D
Sbjct: 312 --------------------------------IHTLTGHQSLTSGMELKD-NILVSGNAD 338
Query: 330 KTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
TV++W + QCL H + VTC+QFN N+ I+ S DG V++W
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLW 387
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358
E+ L L GH V L + + +++S S+D ++R+W V C++ H +T
Sbjct: 269 ETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM-- 325
Query: 359 PIDDNYFISGSIDGKVRIWGV 379
+ DN +SG+ D V+IW +
Sbjct: 326 ELKDNILVSGNADSTVKIWDI 346
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 302 LQELHGHKGDVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQF 357
L+ L GH G V WS+ N ++S S D+T+++W +C++ ++ H + V C+
Sbjct: 152 LRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410
+ + +SGS D +R+W + + + + V + C DG+ + G+
Sbjct: 208 H---EKRVVSGSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRRVVSGA 256
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 302 LQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI 360
+ L+GH V + + ++S S D T+R+W + QCL+V H V CVQ+
Sbjct: 192 IHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--- 247
Query: 361 DDNYFISGSIDGKVRIW 377
D +SG+ D V++W
Sbjct: 248 DGRRVVSGAYDFMVKVW 264
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364
L GH V+ N ++S S D T+++W +CL H V + + DN
Sbjct: 114 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRDNI 171
Query: 365 FISGSIDGKVRIW 377
ISGS D +++W
Sbjct: 172 IISGSTDRTLKVW 184
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
+
Sbjct: 171 GQ 172
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380
Y+++ S D T+++W C+ + H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 381 EKRV 384
+V
Sbjct: 259 TYKV 262
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
+
Sbjct: 171 GQ 172
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 276
+ +AH I ++ P Y+ SG +D V++W+ + A ++F F
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 277 XXXXXXSSHVPVVIPDEVFQIEESPL-------QELHGHKGDVLDLAWSNSNYLLSCSMD 329
S + + +V+ + +S QE + D L + Y+++ S D
Sbjct: 152 DPSTFASGCLDRTV--KVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDD 207
Query: 330 KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
T+++W C+ + H + V+ F+P ISGS DG ++IW +V
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
+
Sbjct: 171 GQ 172
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 276
+ +AH I ++ P Y+ SG +D V++W+ + A ++F F
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 277 XXXXXXSSHVPVVIPDEVFQIEESPL-------QELHGHKGDVLDLAWSNSNYLLSCSMD 329
S + + +V+ + +S QE + D L + Y+++ S D
Sbjct: 152 DPSTFASGCLDRTV--KVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDD 207
Query: 330 KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384
T+++W C+ + H + V+ F+P ISGS DG ++IW +V
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCL-NVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
Y+LS S D TV++W N L F+ H ++V CV FNP D + F SG +D V++W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 380 CE 381
+
Sbjct: 171 GQ 172
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380
Y+++ S D T+++W C+ + H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Query: 381 EKRV 384
+V
Sbjct: 259 TYKV 262
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 46/186 (24%)
Query: 198 EVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS 257
++K K +FT + E AHK I ++ + P LA+G D V IW A
Sbjct: 35 KIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA-- 91
Query: 258 CKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW 317
D F+++ L + GH+ +V +AW
Sbjct: 92 ----------------------------------DRTFEMD--LLAIIEGHENEVKGVAW 115
Query: 318 SNSNYLL-SCSMDKTVRMWQVGCN----QCLNVFDHHNY-VTCVQFNPIDDNYFISGSID 371
SN Y L +CS DK+V +W+ + +C++V H+ V V ++P + S S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYD 174
Query: 372 GKVRIW 377
VRIW
Sbjct: 175 DTVRIW 180
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGS--NAXXXXXXXXXXXS 283
W L ++P G LAS G D +RIW + CKS +G + +
Sbjct: 20 WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCN-- 340
S + Q + + L GH+ +V +AW+ S N L +CS DK+V +W+V
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 341 -QCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 377
+C++V + H V V ++P S S D V+++
Sbjct: 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
++ H+ +W+L F P G+ LAS +D VRIW
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 305 LHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQ 336
L GH+ V LA+ S L SCS D+TVR+W+
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 237 LASGGEDGVVRIWH-----VTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIP 291
+AS DG VR+W + +V + + F + + S + VP+
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY 351
E PL L GH+G+V L++ + ++S S DKT ++W+ G + N+ H+
Sbjct: 92 SG-----EDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKEG-SLVYNLQAHNAS 144
Query: 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGS 410
V + +N F++ S D +++W +K + ++ + DV+ + + DG
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG------- 196
Query: 411 ITGTCHFYKASGNDLKLEKVDFH 433
HF S ND ++ VD H
Sbjct: 197 -----HFISCS-NDGLIKLVDXH 213
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
HK + ++F+ DG+ L S ED V+++W+ T D F
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1051
Query: 280 XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
S + D + I ++ H+G VL A S ++ S S DKT ++
Sbjct: 1052 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 335 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
W L+ HN V C F+ +D +G +G++RIW V + +++ V
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 394 ----------ISAICYIPDGKGFI 407
++ +C+ PD K +
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLV 1194
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFT 262
K F L E++ H GC+ FS DG LA+G ++G +RIW+V+ + SC +
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169
Query: 263 DDGGFGSNA 271
+ G ++
Sbjct: 1170 VEEGTATHG 1178
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 293 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
+VF+ E L ++ H+ +VL A+S+ + Y+ +CS DK V++W + ++ +D H+
Sbjct: 640 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 699
Query: 351 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 382
V C F ++ + +GS D +++W + +K
Sbjct: 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 49/317 (15%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
H + +FSPD LAS DG +R+W V S A KS F S+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEV 799
Query: 280 -------XXXSSHVPVVIPDEV--FQIEES-PLQELH-GHKGDVLDLAWSNSNYLLSCSM 328
+ V ++V F I S L E+H GH + +S ++L ++
Sbjct: 800 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 329 DKT-VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW---GVCE 381
+ V +W + L V D H ++V V F+P D + F++ S D +R+W VC+
Sbjct: 860 SQYCVELWNIDSR--LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCK 916
Query: 382 KRVVDWADVRDVI-----SAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDR 435
+ DV+ + + + + +G ++ TG ++D+
Sbjct: 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------QIDYLPE 961
Query: 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495
+ S ++ + + ED ++I++ + G+ + FT G
Sbjct: 962 AQVSCCCLS------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 496 KHIISIGDDCRVYVWNY 512
K +IS +D + VWN+
Sbjct: 1016 KTLISSSEDSVIQVWNW 1032
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 188 NSEKPKANKMEVKQ------------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 235
SE + K++ KQ NKK + L ++ H ++ FS DG+
Sbjct: 573 TSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLV----VRPHTDAVYHACFSQDGQ 628
Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVF 295
+AS G D ++++ A + + D ++ S++ D+
Sbjct: 629 RIASCGADKTLQVFK----AETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 296 QIEESPLQEL----HGHKGDVLDLAWSN-SNYLL--SCSMDKTVRMWQVGCNQCLN-VFD 347
+I +S +L H V ++N SN+LL + S D +++W + +C N +F
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
H N V +F+P DD S S DG +R+W V
Sbjct: 742 HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 772
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 323 LLSCSMDKTVRMWQVGCNQ-CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
+ SC DKT+++++ + L++ H + V C F+ DD+Y + S D KV+IW
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT 688
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--- 438
++V D C+ + ++ + TG+ F+ LKL ++ + + T
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLA-TGSNDFF------LKLWDLNQKECRNTMFG 741
Query: 439 SGNKITGIQFSRDESQRIMITSEDSKLRILD 469
N + +FS D+ + + S D LR+ D
Sbjct: 742 HTNSVNHCRFSPDD-ELLASCSADGTLRLWD 771
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+QAH+ + + D R L S DG V++W+V + G S A
Sbjct: 1040 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQ 336
S+ I F + SPL EL GH G V A+S LL+ D +R+W
Sbjct: 1099 KFSSTSADKTAKIWS--FDLL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Query: 337 VGCNQCLN----------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
V Q L+ H +VT V F+P D +S G ++ W V
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNV 1205
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---AASCKSFTDDGGFGSNAXXXX 275
+ H + + FSPDG + +D +R+W V +A D F N
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 276 XXXXXX------------------------XSSHVPVVI---PDEVFQIEESPLQELH-- 306
S H+ V D +I E P +
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 307 --GHKGDVLDLAWS-NSNYLLSCSMDKTVRM--WQVGCNQCLNVFDHHNYVTCVQFNPID 361
GHK V + ++ + L+S S D +++ WQ G VF + T F +
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQ 1054
Query: 362 DNYFISGSIDGKVRIWGVCEKRV 384
D+ +S S DG V++W V R+
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRI 1077
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
HK + ++F+ DG+ L S ED V+++W+ T D F
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---------TGDYVFLQAHQETVKDFR 1058
Query: 280 XXXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRM 334
S + D + I ++ H+G VL A S ++ S S DKT ++
Sbjct: 1059 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 335 WQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393
W L+ HN V C F+ +D +G +G++RIW V + +++ V
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 394 ----------ISAICYIPDGKGFI 407
++ +C+ PD K +
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLV 1201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT--SVAASCKSFT 262
K F L E++ H GC+ FS DG LA+G ++G +RIW+V+ + SC +
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1176
Query: 263 DDGGFGSNA 271
+ G ++
Sbjct: 1177 VEEGTATHG 1185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 293 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
+VF+ E L ++ H+ +VL A+S+ + Y+ +CS DK V++W + ++ +D H+
Sbjct: 647 QVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 706
Query: 351 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 382
V C F ++ + +GS D +++W + +K
Sbjct: 707 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 49/317 (15%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXX 279
H + +FSPD LAS DG +R+W V S A KS F S+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEV 806
Query: 280 -------XXXSSHVPVVIPDEV--FQIEES-PLQELH-GHKGDVLDLAWSNSNYLLSCSM 328
+ V ++V F I S L E+H GH + +S ++L ++
Sbjct: 807 IVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 329 DKT-VRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIW---GVCE 381
+ V +W + L V D H ++V V F+P D + F++ S D +R+W VC+
Sbjct: 867 SQYCVELWNIDSR--LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCK 923
Query: 382 KRVVDWADVRDVI-----SAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDR 435
+ DV+ + + + + +G ++ TG ++D+
Sbjct: 924 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------QIDYLPE 968
Query: 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495
+ S ++ + + ED ++I++ + G+ + FT G
Sbjct: 969 AQVSCCCLS------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 496 KHIISIGDDCRVYVWNY 512
K +IS +D + VWN+
Sbjct: 1023 KTLISSSEDSVIQVWNW 1039
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 188 NSEKPKANKMEVKQ------------NKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGR 235
SE + K++ KQ NKK + L ++ H ++ FS DG+
Sbjct: 580 TSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLV----VRPHTDAVYHACFSQDGQ 635
Query: 236 YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVF 295
+AS G D ++++ A + + D ++ S++ D+
Sbjct: 636 RIASCGADKTLQVFK----AETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 296 QIEESPLQEL----HGHKGDVLDLAWSN-SNYLL--SCSMDKTVRMWQVGCNQCLN-VFD 347
+I +S +L H V ++N SN+LL + S D +++W + +C N +F
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
H N V +F+P DD S S DG +R+W V
Sbjct: 749 HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 779
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 323 LLSCSMDKTVRMWQVGCNQ-CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
+ SC DKT+++++ + L++ H + V C F+ DD+Y + S D KV+IW
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSAT 695
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT--- 438
++V D C+ + ++ + TG+ F+ LKL ++ + + T
Sbjct: 696 GKLVHTYDEHSEQVNCCHFTNKSNHLLLA-TGSNDFF------LKLWDLNQKECRNTMFG 748
Query: 439 SGNKITGIQFSRDESQRIMITSEDSKLRILD 469
N + +FS D+ + + S D LR+ D
Sbjct: 749 HTNSVNHCRFSPDD-ELLASCSADGTLRLWD 778
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 18/173 (10%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+QAH+ + + D R L S DG V++W+V + G S A
Sbjct: 1047 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQ 336
S+ I F + SPL EL GH G V A+S LL+ D +R+W
Sbjct: 1106 KFSSTSADKTAKIWS--FDLL-SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Query: 337 VGCNQCLN----------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
V Q L+ H +VT V F+P D +S G ++ W V
Sbjct: 1163 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG--GYLKWWNV 1212
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---AASCKSFTDDGGFGSNAXXXX 275
+ H + + FSPDG + +D +R+W V +A D F N
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 276 XXXXXX------------------------XSSHVPVVI---PDEVFQIEESPLQELH-- 306
S H+ V D +I E P +
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 307 --GHKGDVLDLAWS-NSNYLLSCSMDKTVRM--WQVGCNQCLNVFDHHNYVTCVQFNPID 361
GHK V + ++ + L+S S D +++ WQ G VF + T F +
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQETVKDFRLLQ 1061
Query: 362 DNYFISGSIDGKVRIWGVCEKRV 384
D+ +S S DG V++W V R+
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRI 1084
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS--VAASCKSFT 262
K F L E++ H GC+ FS D LA+G ++G +RIW+V++ + C +
Sbjct: 1116 KIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS 1175
Query: 263 DDGG 266
++G
Sbjct: 1176 EEGA 1179
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 293 EVFQIEE-SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN 350
+VF+ E L E+ H+ +VL A+S + ++ +CS+DK V++W + ++ +D H+
Sbjct: 646 QVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS 705
Query: 351 -YVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEK 382
V C F + + +GS D +++W + +K
Sbjct: 706 EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 67/326 (20%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS------------------------VA 255
H + +FSPD + LAS DG +++W TS V
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Query: 256 ASCKSFTDDGGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIE---ESPLQELH-GHKGD 311
C S++ DG + + V +++F + L E+H GH
Sbjct: 807 VKCCSWSADG------------------ARIMVAAKNKIFLFDIHTSGLLGEIHTGHHST 848
Query: 312 VLDLAWSNSNYLLSCSMDKT-VRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369
+ +S N+L ++ + V +W ++ + H ++V V F+P D + F++ S
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP-DGSSFLTSS 907
Query: 370 IDGKVRIW---GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426
D +R+W VC+ V DV+ + + ++ H + + +
Sbjct: 908 DDQTIRLWETKKVCKNSAVMLKQEVDVV-----FQENEVMVL----AVDHIRRLQLINGR 958
Query: 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQ 486
++D+ + S ++ Q I E+ + IL+ V+ +
Sbjct: 959 TGQIDYLTEAQVSCCCLSP------HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 487 MSASFTTTGKHIISIGDDCRVYVWNY 512
FT K +IS DD + VWN+
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW 1038
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
HK +W ++F+ D + L S +D +++W+ D F
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ---------LDKCIFLRGHQETVKDFRL 1058
Query: 281 XXSSHVPVVIPDEVFQ----IEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMW 335
+S + D + I + ++ H+G VL S+ + S S DKT ++W
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Query: 336 QVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW------- 387
L+ HN V C F+ +D +G +G++RIW V ++
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEE 1177
Query: 388 --ADVRDVISAICYIPDGKGFI 407
A ++ +C+ PDGK I
Sbjct: 1178 GAATHGGWVTDLCFSPDGKMLI 1199
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 46/163 (28%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXX 276
EI+AH+ + FS D R++A+ D V+IW+ S T +
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN---------SMTGE------------ 696
Query: 277 XXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC-SMDKTVRMW 335
V DE H + + S+ + LL+ S D +++W
Sbjct: 697 ----------LVHTYDE------------HSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 336 QVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
+ +C N +F H N V +F+P DD S S DG +++W
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLW 776
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDK-TVRMWQVGCNQCLNV---------FDHHN 350
PL EL GH G V A+S + LL+ D +R+W V + L++ H
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
+VT + F+P D IS G ++ W V
Sbjct: 1185 WVTDLCFSP-DGKMLISAG--GYIKWWNV 1210
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG 265
+ A + + H G + L FSPDG+ L S G G ++ W+V + S ++F +G
Sbjct: 1168 LHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVT-GESSQTFYTNG 1223
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 15/141 (10%)
Query: 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSS 284
I ++ +SPDG+YLASG DG++ I+ +A T +G S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIF---DIATGKLLHTLEG-----HAMPIRSLTFSPDS 218
Query: 285 HVPVVIPDE----VFQIEESPLQ-ELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVG 338
+ V D+ ++ ++ + L L GH VL++A+ + + +S S DK+V++W VG
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 339 CNQCLNV-FDHHNYVTCVQFN 358
C++ FDH + V V++N
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYN 299
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFT-DDGGFGSNAXXXXXXXXXXXSS 284
WTL FSPD +YLA+G G V I+ V S K ++ D G + S
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 285 HVPVVIPDEVFQIEESP-LQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQV-GCNQ 341
+ +I +F I L L GH + L +S +S L++ S D ++++ V N
Sbjct: 183 AIDGII--NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI 400
+ H ++V V F P DD +F+S S D V++W V + V + D +D + + Y
Sbjct: 241 AGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
Query: 401 PDGKGFIVGSITGTCHFY 418
+G + H Y
Sbjct: 300 GNGSKIVSVGDDQEIHIY 317
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 92/261 (35%), Gaps = 74/261 (28%)
Query: 313 LDLAWSNSNYLL---------------SCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQ 356
LDL WS + L S S+D +R+W + + + D +
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTC 415
F+P D Y +G+ GKV I+GV + D R I +I Y PDGK G+I G
Sbjct: 130 FSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 416 HFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH 475
+ + + L L ++ H I + FS D SQ ++ S+D ++I DV H
Sbjct: 189 NIFDIATGKL-LHTLEGH------AMPIRSLTFSPD-SQLLVTASDDGYIKIY---DVQH 237
Query: 476 KFKGLPKSGSQ---------------------------------------------MSAS 490
SG
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297
Query: 491 FTTTGKHIISIGDDCRVYVWN 511
+ G I+S+GDD +++++
Sbjct: 298 YNGNGSKIVSVGDDQEIHIYD 318
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 251
++ H I +L FSPD + L + +DG ++I+ V
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 212 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 264
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263
Query: 265 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 324
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 264 NXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 321
Query: 325 SCSMDK-TVRMWQV 337
S + D VR+W+
Sbjct: 322 SSAGDDGKVRLWKA 335
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252
H G +W++ ++ G L+S G+DG VR+W T
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 212 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 264
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 202 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 261
Query: 265 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 324
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 262 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 319
Query: 325 SCSMDK-TVRMWQVGCN---QCLNVF 346
S + D VR+W+ + +C++V
Sbjct: 320 SSAGDDGKVRLWKATYSNEFKCMSVI 345
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 212 LYTSQEIQAHKGCIWTLKFSPD-GRY---LASGGEDGVVRIWHVT---SVAASCKSFTDD 264
L+ + ++ HK I ++ ++P GR+ +A+G +DG +RI+ +T S AS +S T+
Sbjct: 204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263
Query: 265 GGFGSNAXXXXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLL 324
F ++A S+ Q+E L E H G+V ++W+ + +L
Sbjct: 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVE--LLSEHDDHNGEVWSVSWNLTGTIL 321
Query: 325 SCSMDK-TVRMWQVGCN---QCLNVF 346
S + D VR+W+ + +C++V
Sbjct: 322 SSAGDDGKVRLWKATYSNEFKCMSVI 347
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 126/334 (37%), Gaps = 95/334 (28%)
Query: 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAA----SCKSFTDDGGFGSNAXX 273
+ H G I TL P +GRY+ SGG DGV+ ++ + + + +CK+ G
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG-------- 91
Query: 274 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVR 333
+ P ++H + + + ++ S S DKT++
Sbjct: 92 ------------------------RDHP--DVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125
Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI--SGSIDGKVRIWGVCEKRVVDWADV- 390
+W Q +VF+ V +P+ + + G+ KV++ C+ + + +
Sbjct: 126 VWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL---CDLKSGSCSHIL 182
Query: 391 ---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447
R I A+ + P +I+ + + +V D ++ SG IT Q
Sbjct: 183 QGHRQEILAVSWSPR-YDYILATASAD-------------SRVKLWDVRRASGCLITLDQ 228
Query: 448 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDC 505
+ +SQ + + + H K GL FT+ G H++++G D
Sbjct: 229 HNGKKSQAV------------ESANTAHNGKVNGL---------CFTSDGLHLLTVGTDN 267
Query: 506 RVYVW----------NYDELCFPSSKQKNSVRSC 529
R+ +W NY ++C S K SC
Sbjct: 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 308 HKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-- 364
H G VLD+ WS+ + + + S DKT +MW + NQ + + H V + + NY
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNYSC 143
Query: 365 FISGSIDGKVRIW 377
++GS D ++ W
Sbjct: 144 VMTGSWDKTLKFW 156
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 336 QV 337
QV
Sbjct: 314 QV 315
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
K+ + +D + ++ + P+ + TG F
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVR 375
+S+ +S D +V++W + L ++ H+ V CV P D F+S DG++
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 376 IWGVCEKRV---VDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD 431
+W + + +D+ + +++ + P+ F G TG + ++ D
Sbjct: 208 LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL-------VNIKNPD 260
Query: 432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470
ITG+ +S S + SED + +LD
Sbjct: 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 308 HKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365
H ++ LA+S +S +L S S D TV + ++ H ++VT V ++P+D + F
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKF 327
Query: 366 ISGSIDGKV 374
+ D KV
Sbjct: 328 TTVGWDHKV 336
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFI 366
V D+AW + +L S V +W++ + L V ++H + V + D +
Sbjct: 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155
Query: 367 SGSIDGKVRIWGVCEKRVV 385
SG D V++W + +K V+
Sbjct: 156 SGGKDFSVKVWDLSQKAVL 174
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGHKG----DVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 336 QV 337
QV
Sbjct: 314 QV 315
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
K+ + +D + ++ + P+ + TG F
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 336 Q 336
Q
Sbjct: 314 Q 314
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 227
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
K+ + +D + ++ + P+ + TG F
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 336 QV 337
QV
Sbjct: 314 QV 315
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 182
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 235
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 13/210 (6%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXX 275
+ + H + + DG Y S D +R+W V A+ +++ G S+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKSDVMSVD 114
Query: 276 XXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDL-------AWSNSNYLLSCSM 328
+V+ I+ L L GH V + A +S ++S
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 329 DKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387
DK V+ W + Q F HN + + +P D S DG++ +W + K+ +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 388 ADVRDVISAICYIPDGKGFIVGSITGTCHF 417
+D + ++ + P+ + TG F
Sbjct: 234 LSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 117 K-KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 255 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 336 QV 337
QV
Sbjct: 314 QV 315
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 97/261 (37%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ K
Sbjct: 133 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDKX---------VKAWN 182
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 183 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIXLWN-----LAAKKAXYTLS 235
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT 256
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAA 227
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
K+ +D + ++ + P+ + TG F
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 263
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 301 PLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFN 358
P++ GH V D + + Y LS S DKT+R+W V + F H + V V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405
+ ISGS D +++W + + + D +S + +P+ K
Sbjct: 111 K-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H I TL SPDG +AS G+DG + +W++ + A D F
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGH----KGDVLDLAWS-NSNYLLSCSMDKTVRMW 335
++ + V D + +++ E G+ + + LAWS + L + D +R+W
Sbjct: 249 ATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Query: 336 QV 337
QV
Sbjct: 308 QV 309
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 100/261 (38%), Gaps = 34/261 (13%)
Query: 305 LHGHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQV-GCNQCLNV----FDHHNYVTCVQF 357
L GH G V LA S N LLS S DKT+ W++ G +Q V F H+++
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 358 NPIDDNYFISGSIDGKVRIWGVC----------EKRVVDWADVRDVISAICYIPDGKGFI 407
D Y +S S D +R+W V K V D+ S I K
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467
V +I G C ND + +V +K + +T I D+ M+ + +
Sbjct: 127 VWTIKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDK----MVKAWN----- 176
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527
L+ + F G + + ++AS G I S G D + +WN + K ++
Sbjct: 177 LNQFQIEADFIGHNSNINTLTAS--PDGTLIASAGKDGEIMLWN-----LAAKKAMYTLS 229
Query: 528 SCEHFFSEGVSVAVQWPGIGT 548
+ + FS S W T
Sbjct: 230 AQDEVFSLAFSPNRYWLAAAT 250
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381
++S DK V+ W + Q F HN + + +P D S DG++ +W +
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAA 221
Query: 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF 417
K+ + +D + ++ + P+ + TG F
Sbjct: 222 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF 257
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 307 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQ 356
GH VLD+AW N N + S S D TV +W++ + + H V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 357 FNPIDDNYFISGSIDGKVRIWGV 379
++P N +S D + +W V
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 46/130 (35%)
Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXX 278
QAH I LKF P G L S +D ++IW V GSN
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--------------GSNP------- 171
Query: 279 XXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQV 337
+ L GH+ V D+A +LS S+D T+R+W+
Sbjct: 172 ------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 338 GCNQCLNVFD 347
G ++ F+
Sbjct: 208 GTGTTIHTFN 217
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 304 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 348
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 249
Query: 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 404
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
+ Y AS D L + R
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 46/130 (35%)
Query: 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXX 278
QAH I LKF P G L S +D ++IW V GSN
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD--------------GSNP------- 174
Query: 279 XXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQV 337
+ L GH+ V D+A +LS S+D T+R+W+
Sbjct: 175 ------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 338 GCNQCLNVFD 347
G ++ F+
Sbjct: 211 GTGTTIHTFN 220
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 22/162 (13%)
Query: 318 SNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376
S+ +S S D +++W + L+ + H VTCV +P D+ F+S S D ++ +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 377 WGV-CEKRVVDWADVRDVISAICYIPDGKG--------FIVGSITGTCHFYKASGNDLKL 427
W C K SA Y+P F+ G GT L
Sbjct: 197 WDTRCPKPASQIG-----CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251
Query: 428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469
+TG+ FS + SED L +LD
Sbjct: 252 SSA-------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 304 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 348
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 249
Query: 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 404
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309
Query: 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
+ Y AS D L + R
Sbjct: 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 340
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 304 ELHGHKGDVLDL-AWSNSNYLLSCSMDKTV--RMWQVGCN------------QCLNVFDH 348
L KG++L + A S++ + CS+D + RM G N + N+ H
Sbjct: 191 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMH 250
Query: 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGK 404
VT V NP D + + S+D V+IW + + R + R ++A C+ PDG
Sbjct: 251 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 310
Query: 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435
+ Y AS D L + R
Sbjct: 311 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHR 341
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 307 GHKGDVLDLAW--SNSNYLLSCSMDKTVRMWQVG--------CNQCLNVFDHHNYVTCVQ 356
GH VLD+AW N N + S S D TV +W++ + + H V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 357 FNPIDDNYFISGSIDGKVRIWGV 379
++P N +S D + +W V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250
+Q H G + T+ SP G ASGGEDG +R+ H
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 36/192 (18%)
Query: 302 LQELHGHKGDVLDLAWS-----NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQ 356
L L GH G + WS + Y ++ S D ++++W V QC+ + V V+
Sbjct: 67 LGTLDGHTGTI----WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122
Query: 357 FNPIDDNYFIS---------GSID--------GKVRIWGVCEKRV--VDWADVRDVISAI 397
F+P NYF++ GSI+ + V E+ + + + D +
Sbjct: 123 FSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181
Query: 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457
+ GK I G G Y S N ++ +D H++ I+ +QFS D + I
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK------SISDMQFSPDLTYFIT 235
Query: 458 ITSEDSKLRILD 469
+S D+ ++D
Sbjct: 236 -SSRDTNSFLVD 246
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 300 SPLQELH-GHKGDVLDLAW--SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCV 355
+PLQ L+ GH+ +L L W + + LLS D TV +W + L+ F N+
Sbjct: 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311
Query: 356 QFNPIDDNYFISGSIDGKVRI 376
+F P + F S D K+ +
Sbjct: 312 KFAPEAPDLFACASFDNKIEV 332
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 314 DLAWSNSNYLLSCSMDK-TVRMWQVG-CNQCLNVF----DHHNYVTCVQFNPIDDNYFIS 367
DL WS++N +++ ++D ++ ++ N +N +H + V V+FN DN S
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131
Query: 368 GSIDGKVRIW 377
G +G++ IW
Sbjct: 132 GGNNGEIFIW 141
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 377
++S S+D T+ +++G ++ L HN +T + NP+ ISGS DG++ W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEW 362
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
+G + L+W +S + D T+R+W V ++C+
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVI--SAICYIPDGKGFIVG-SITGTC 415
+D F + D +R+W V + V W + + + + G G I+ S+ GT
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 416 HFYKASGNDLKLEKVDFHDRKKTS 439
+FY+ G+D L+ + H++ T+
Sbjct: 322 NFYEL-GHDEVLKTISGHNKGITA 344
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHNY-VTCVQFNPIDDNYFISGSIDGKVRIW 377
++S S+D T+ +++G ++ L HN +T + NP+ ISGS DG++ W
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEW 362
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL 343
+G + L+W +S + D T+R+W V ++C+
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 287
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVI--SAICYIPDGKGFIVG-SITGTC 415
+D F + D +R+W V + V W + + + + G G I+ S+ GT
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 416 HFYKASGNDLKLEKVDFHDRKKTS 439
+FY+ G+D L+ + H++ T+
Sbjct: 322 NFYEL-GHDEVLKTISGHNKGITA 344
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 8/182 (4%)
Query: 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXXXXSSHV 286
++K+S DG +L+ G +G+V I+ V S G + S
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDV----ESQTKLRTMAGHQARVGCLSWNRHVLSSGSR 194
Query: 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAW-SNSNYLLSCSMDKTVRMWQVGCN-QCLN 344
I +I + L GH +V LAW S+ L S D V++W +
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 345 VFDHHNYVTCVQFNPIDDNYFIS--GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD 402
+H+ V V + P N + G++D ++ W V+ D ++++ + P
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH 314
Query: 403 GK 404
K
Sbjct: 315 SK 316
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 74/217 (34%), Gaps = 57/217 (26%)
Query: 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXX 277
+Q H + L + DG LASGG D VV+IW S S FT
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPKFTKT------------- 256
Query: 278 XXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS--NSNYLLS--CSMDKTVR 333
H V +AW SN L + +MDK +
Sbjct: 257 -----------------------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIW-----GVCEKRVVDW 387
W +N D + VT + ++P + G D + IW G+ ++ +
Sbjct: 288 FWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA 347
Query: 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424
D R + SA+ PDG+ + F++ D
Sbjct: 348 HDTRVLYSALS--PDGRILSTAASDENLKFWRVYDGD 382
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV 254
AH G ++ L +SPDG +AS D ++IW+V ++
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 39/120 (32%)
Query: 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXXXXXXXXX 280
H + +++++PDG AS G DG + +++ T G F
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYN-------GVDGTKTGVF------------- 228
Query: 281 XXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGC 339
E+ L+ + H G V L WS + + S S DKT+++W V
Sbjct: 229 -----------------EDDSLKNV-AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS 260
T +YT +H+ + K SP G Y ASG G VRIW T K+
Sbjct: 52 TEIYTEH---SHQTTV--AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 301 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 351
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 352 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 406
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 407 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 465
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDRRL 346
Query: 466 RILD 469
+ D
Sbjct: 347 HVWD 350
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 215 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 273
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 317
Query: 274 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 306
SH DE+FQ++ SP E LH
Sbjct: 318 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 307 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 340
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 301 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 351
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 352 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 406
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 407 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 465
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDRRL 348
Query: 466 RILD 469
+ D
Sbjct: 349 HVWD 352
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 215 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 273
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 272 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 319
Query: 274 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 306
SH DE+FQ++ SP E LH
Sbjct: 320 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 307 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 340
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 301 PLQELHGHKGDVLDLAWS-NSN-YLLSCSMDKTVRMWQVGCN-------QCLNVFDHHNY 351
P L GH+ + L+W+ N N YLLS S D T+ +W + N+F H
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 352 VTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKGF 406
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 407 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 465
+ GS T + LKL + H ++I +Q+S + + D +L
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGTDRRL 350
Query: 466 RILD 469
+ D
Sbjct: 351 HVWD 354
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 68/168 (40%)
Query: 215 SQEIQAHKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAXX 273
S + AH + L F+P + LA+G D V +W + ++ SF
Sbjct: 274 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF------------ 321
Query: 274 XXXXXXXXXSSHVPVVIPDEVFQIEESPLQE-----------LH---------------- 306
SH DE+FQ++ SP E LH
Sbjct: 322 ---------ESH-----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 307 ------------GHKGDVLDLAWSNSNYLLSCSM--DKTVRMWQVGCN 340
GH + D +W+ + + CS+ D +++WQ+ N
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 307 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNY-VTCVQFNPI 360
GH V D+AW + + S + D+ + +W N + ++ D H V C+ FNP
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 361 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 44/239 (18%)
Query: 300 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHN 350
+P L GH+ + L+W++ S +LLS S D TV +W + +F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 351 YVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 405
V V ++ + ++ F S + D K+ IW + + D +A + + P +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 406 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464
+ GS T + LKL + H ++I + +S + + D +
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHK------DEIFQVHWSPHNETILASSGTDRR 343
Query: 465 LRILDGVDVIHKFKGLPKSGSQMSAS---------FTTTGKHIISIGDDCRVYVWNYDE 514
L + D L K G + SA G H I D + WN +E
Sbjct: 344 LNVWD----------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD----FSWNPNE 388
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 307 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCN---QCLNVFDHHNY-VTCVQFNPI 360
GH V D+AW + + S + D+ + +W N + ++ D H V C+ FNP
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 361 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 44/239 (18%)
Query: 300 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCN-------QCLNVFDHHN 350
+P L GH+ + L+W++ S +LLS S D TV +W + +F H+
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 351 YVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 405
V V ++ + ++ F S + D K+ IW + + D +A + + P +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 406 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464
+ GS T + LKL + H ++I + +S + + D +
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHK------DEIFQVHWSPHNETILASSGTDRR 343
Query: 465 LRILDGVDVIHKFKGLPKSGSQMSAS---------FTTTGKHIISIGDDCRVYVWNYDE 514
L + D L K G + SA G H I D + WN +E
Sbjct: 344 LNVWD----------LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD----FSWNPNE 388
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 302 LQELHGHKGDVLDLAWSNSNY---LLSCSMDKTVRMWQVGCNQCLNVFDHHNY---VTCV 355
+ +L GH+G V +AW++ Y L SCS D+ V +W+ +H + V V
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV 109
Query: 356 QFNPIDDNYFIS-GSIDGKVRI 376
+ P D ++ GS DG + +
Sbjct: 110 CWAPHDYGLILACGSSDGAISL 131
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 307 GHKGDVLDLAWS--NSNYLLSCSMDKTVRMWQVGCNQC----LNVFDHHNYVTCVQFNPI 360
GH V D++W + + S + D+ + +W N +V H V C+ FNP
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 361 DDNYFISGSIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT 412
+ +GS D V +W + + ++ + +D I + + P + + S T
Sbjct: 285 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 21/185 (11%)
Query: 300 SPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGC-------NQCLNVFDHHN 350
+P L GH+ + L+W+ S +LLS S D T+ +W + +F H
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 351 YVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISA----ICYIPDGKG 405
V V ++ + ++ F S + D K+ IW + D +A + + P +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 406 FIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464
+ GS T + LKL + H ++I +Q+S + + D +
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHK------DEIFQVQWSPHNETILASSGTDRR 341
Query: 465 LRILD 469
L + D
Sbjct: 342 LNVWD 346
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377
+S SC D + +W + + F H + +C+ + D +G +D VR W
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSW 210
Query: 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVG 409
+ E R + D I ++ Y P G+ VG
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIW 249
++ H+ C+ +LKF+ G++ S G+D ++ W
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 9/166 (5%)
Query: 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAXXX 274
++ Q H + S DG L +GG D VR W + FT
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 275 XXXXXXXXSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSN-SNYLLSCSMDKTVR 333
SS+V EV + + +LH H+ VL L ++ + +S D +
Sbjct: 237 EWLAVGMESSNV------EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 334 MWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
W+ + + V + +DD Y ++GS D K ++ V
Sbjct: 291 AWRTPYGASIFQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVYEV 335
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 361
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 209
Query: 362 DNYFISGSIDGKVRIWGVCEKRVVD 386
+ +S +D +++W + KR+++
Sbjct: 210 EK-IMSCGMDHSLKLWRINSKRMMN 233
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 361
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 362 DNYFISGSIDGKVRIWGVCEKRVVD 386
+ +S +D +++W + KR+++
Sbjct: 169 EK-IMSCGMDHSLKLWRINSKRMMN 192
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 361
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 362 DNYFISGSIDGKVRIWGVCEKRVVD 386
+ +S +D +++W + KR+++
Sbjct: 173 EK-IMSCGMDHSLKLWRINSKRMMN 196
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 361
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 362 DNYFISGSIDGKVRIWGVCEKRVVD 386
+ +S +D +++W + KR+++
Sbjct: 173 EK-IMSCGMDHSLKLWRINSKRMMN 196
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 306 HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPID 361
HG+ + L + N LLS S D +R+W + + + +F H + V ++ +
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 362 DNYFISGSIDGKVRIWGVCEKRVVD 386
+ +S +D +++W + KR+++
Sbjct: 174 EK-IMSCGMDHSLKLWRINSKRMMN 197
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 341 QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379
QC+ + H N + ++F+P D N +S S D +R+W +
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|2XSP|A Chain A, Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|A Chain A, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
pdb|2YG1|B Chain B, Apo Structure Of Cellobiohydrolase 1 (Cel7a) From
Heterobasidion Annosum
Length = 440
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 524
LDG D + G+ SG+ ++ F T G + +IG RVY+ + D+ + K KN
Sbjct: 73 LDGADYSGTY-GISTSGNALTLKFVTNGPYSTNIGS--RVYLMSADDTNYEIFKLKN 126
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDG 403
N +T +P + Y I+GS G ++IW + E V + D ++ I IP+
Sbjct: 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF 123
Query: 404 KGFIVGSITGTCHFYKAS 421
F V S G K +
Sbjct: 124 DAFAVSSKDGQIIVLKVN 141
>pdb|3UPY|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPY|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 445
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
E+ +I +T ++ + +DVI G+P+ G++ + GKH++ + + V +
Sbjct: 89 EAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGP 148
Query: 512 Y 512
Y
Sbjct: 149 Y 149
>pdb|3UPL|A Chain A, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway.
pdb|3UPL|B Chain B, Crystal Structure Of The Brucella Abortus Enzyme
Catalyzing The First Committed Step Of The
Methylerythritol 4-Phosphate Pathway
Length = 446
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511
E+ +I +T ++ + +DVI G+P+ G++ + GKH++ + + V +
Sbjct: 89 EAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGP 148
Query: 512 Y 512
Y
Sbjct: 149 Y 149
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 251
AH + +L F+ G L S G DG +R W V
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV 251
AH + +L F+ G L S G DG +R W V
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,757,789
Number of Sequences: 62578
Number of extensions: 874106
Number of successful extensions: 2826
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1864
Number of HSP's gapped (non-prelim): 626
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)