Query 005956
Match_columns 667
No_of_seqs 975 out of 4189
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 16:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 1.2E-76 2.6E-81 632.8 45.9 625 5-667 5-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 2.2E-38 4.8E-43 309.6 26.7 319 212-591 105-470 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4E-38 8.6E-43 311.9 23.3 271 220-544 173-450 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 9.9E-38 2.1E-42 309.1 19.1 251 208-511 203-458 (459)
5 KOG0286 G-protein beta subunit 100.0 1.4E-35 3.1E-40 281.2 29.8 284 213-511 46-343 (343)
6 KOG0271 Notchless-like WD40 re 100.0 8.9E-36 1.9E-40 291.4 24.5 278 213-543 148-470 (480)
7 KOG0279 G protein beta subunit 100.0 1.2E-33 2.5E-38 266.8 31.0 283 214-547 7-306 (315)
8 KOG0315 G-protein beta subunit 100.0 2.9E-33 6.3E-38 259.8 29.2 269 235-519 11-294 (311)
9 KOG0293 WD40 repeat-containing 100.0 5.4E-34 1.2E-38 281.3 25.7 355 138-568 151-513 (519)
10 KOG0295 WD40 repeat-containing 100.0 3.7E-34 7.9E-39 279.0 22.7 364 121-542 5-394 (406)
11 KOG0265 U5 snRNP-specific prot 100.0 3.3E-33 7.3E-38 266.2 25.8 278 217-546 42-330 (338)
12 KOG0279 G protein beta subunit 100.0 1.4E-32 3E-37 259.6 26.6 246 213-513 54-313 (315)
13 KOG0263 Transcription initiati 100.0 2.8E-32 6E-37 290.2 25.4 283 210-517 367-653 (707)
14 KOG0282 mRNA splicing factor [ 100.0 4.9E-33 1.1E-37 280.3 18.3 278 208-536 200-486 (503)
15 KOG0273 Beta-transducin family 100.0 2.1E-31 4.5E-36 267.4 29.3 270 222-546 235-515 (524)
16 KOG0316 Conserved WD40 repeat- 100.0 4.6E-31 9.9E-36 243.3 24.3 270 215-542 10-288 (307)
17 KOG0263 Transcription initiati 100.0 1.4E-31 3.1E-36 284.8 22.9 209 211-473 440-651 (707)
18 KOG0285 Pleiotropic regulator 100.0 7.3E-31 1.6E-35 255.0 24.6 310 210-580 139-451 (460)
19 KOG0266 WD40 repeat-containing 100.0 1.3E-29 2.9E-34 276.5 33.5 280 215-543 151-441 (456)
20 KOG0291 WD40-repeat-containing 100.0 7E-30 1.5E-34 269.0 29.2 248 217-518 345-617 (893)
21 KOG0318 WD40 repeat stress pro 100.0 8.3E-29 1.8E-33 251.7 35.6 414 210-659 47-515 (603)
22 KOG0318 WD40 repeat stress pro 100.0 2.5E-29 5.5E-34 255.4 31.2 259 208-518 176-565 (603)
23 KOG0645 WD40 repeat protein [G 100.0 4.1E-29 8.9E-34 235.2 28.8 274 212-513 4-311 (312)
24 cd00200 WD40 WD40 domain, foun 100.0 1.8E-28 3.8E-33 249.1 35.4 276 215-544 2-281 (289)
25 KOG0284 Polyadenylation factor 100.0 5.7E-31 1.2E-35 260.0 16.2 246 216-515 132-382 (464)
26 KOG0291 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 259.2 31.9 288 206-547 291-605 (893)
27 PLN00181 protein SPA1-RELATED; 100.0 4.1E-28 8.8E-33 283.9 38.8 281 216-544 477-783 (793)
28 KOG1407 WD40 repeat protein [F 100.0 9.7E-29 2.1E-33 231.4 25.6 280 216-547 14-295 (313)
29 KOG0282 mRNA splicing factor [ 100.0 1.8E-30 3.9E-35 261.8 14.6 292 298-659 203-503 (503)
30 KOG0266 WD40 repeat-containing 100.0 2.4E-28 5.2E-33 266.6 28.0 250 214-513 195-454 (456)
31 KOG0295 WD40 repeat-containing 100.0 9.8E-29 2.1E-33 241.2 21.1 249 211-512 139-405 (406)
32 KOG0643 Translation initiation 100.0 7.2E-28 1.5E-32 226.2 25.9 246 217-515 5-319 (327)
33 KOG0265 U5 snRNP-specific prot 100.0 2.8E-28 6.2E-33 232.6 23.0 248 217-511 85-336 (338)
34 KOG1446 Histone H3 (Lys4) meth 100.0 5.8E-27 1.3E-31 226.0 31.9 281 212-543 4-294 (311)
35 KOG0319 WD40-repeat-containing 100.0 5.2E-28 1.1E-32 254.9 26.8 404 210-660 92-618 (775)
36 KOG0286 G-protein beta subunit 100.0 6.5E-28 1.4E-32 229.3 24.6 234 300-542 46-291 (343)
37 KOG0276 Vesicle coat complex C 100.0 2.2E-27 4.8E-32 245.3 29.4 278 215-547 6-292 (794)
38 KOG0284 Polyadenylation factor 100.0 7.6E-29 1.6E-33 245.0 17.2 274 220-547 94-373 (464)
39 KOG0275 Conserved WD40 repeat- 100.0 1E-28 2.2E-33 236.8 17.5 277 220-540 211-495 (508)
40 KOG0296 Angio-associated migra 100.0 7E-27 1.5E-31 228.5 27.5 284 215-546 57-390 (399)
41 KOG0640 mRNA cleavage stimulat 100.0 2.8E-27 6E-32 226.1 23.5 273 210-516 100-386 (430)
42 KOG0315 G-protein beta subunit 100.0 6E-27 1.3E-31 217.9 24.9 251 270-547 16-281 (311)
43 KOG2055 WD40 repeat protein [G 100.0 2.1E-27 4.6E-32 238.2 21.3 276 309-596 213-506 (514)
44 KOG0273 Beta-transducin family 100.0 1.5E-26 3.2E-31 232.7 26.2 245 212-513 266-523 (524)
45 cd00200 WD40 WD40 domain, foun 100.0 1E-25 2.2E-30 228.8 32.4 244 214-511 43-289 (289)
46 KOG0647 mRNA export protein (c 100.0 3.2E-26 7E-31 218.7 25.4 275 220-546 25-315 (347)
47 KOG0292 Vesicle coat complex C 100.0 1.1E-26 2.3E-31 248.3 23.7 277 219-542 6-310 (1202)
48 KOG0277 Peroxisomal targeting 100.0 4.9E-27 1.1E-31 219.2 18.5 240 221-512 59-308 (311)
49 KOG0281 Beta-TrCP (transducin 99.9 1.9E-27 4.2E-32 230.2 15.5 244 209-517 224-481 (499)
50 KOG1036 Mitotic spindle checkp 99.9 9E-26 2E-30 216.7 26.4 272 221-547 12-297 (323)
51 KOG0319 WD40-repeat-containing 99.9 1.4E-26 2.9E-31 244.3 22.6 256 209-515 353-621 (775)
52 KOG0296 Angio-associated migra 99.9 9.3E-26 2E-30 220.6 26.7 274 214-513 98-398 (399)
53 KOG0294 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 216.0 25.5 242 216-516 37-284 (362)
54 KOG0313 Microtubule binding pr 99.9 5.1E-26 1.1E-30 223.4 23.4 253 213-513 135-418 (423)
55 KOG0293 WD40 repeat-containing 99.9 1.9E-26 4.2E-31 228.0 20.1 252 212-515 259-515 (519)
56 KOG0281 Beta-TrCP (transducin 99.9 3.7E-27 8E-32 228.2 14.7 231 221-518 196-433 (499)
57 KOG0285 Pleiotropic regulator 99.9 4.5E-26 9.8E-31 221.7 22.1 253 207-515 178-441 (460)
58 KOG0276 Vesicle coat complex C 99.9 2.3E-25 5.1E-30 230.4 28.5 252 210-515 43-300 (794)
59 KOG0772 Uncharacterized conser 99.9 4.1E-26 8.9E-31 231.4 22.3 287 216-512 161-486 (641)
60 KOG2096 WD40 repeat protein [G 99.9 2.3E-25 4.9E-30 213.9 26.2 310 192-513 56-402 (420)
61 PLN00181 protein SPA1-RELATED; 99.9 4E-25 8.7E-30 258.7 34.0 241 221-512 531-792 (793)
62 KOG0306 WD40-repeat-containing 99.9 1.1E-25 2.5E-30 237.3 25.7 274 217-515 368-666 (888)
63 KOG0278 Serine/threonine kinas 99.9 1.1E-26 2.3E-31 216.2 15.7 270 216-544 8-287 (334)
64 KOG0292 Vesicle coat complex C 99.9 1.1E-25 2.4E-30 240.6 25.0 244 215-513 44-321 (1202)
65 PTZ00421 coronin; Provisional 99.9 1.6E-24 3.4E-29 236.0 33.9 258 221-517 19-294 (493)
66 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.7E-31 229.8 15.7 251 216-521 169-425 (459)
67 KOG0310 Conserved WD40 repeat- 99.9 1.7E-25 3.8E-30 226.4 23.8 247 217-517 63-313 (487)
68 KOG0288 WD40 repeat protein Ti 99.9 5.3E-26 1.1E-30 225.4 18.7 245 214-510 211-458 (459)
69 PTZ00421 coronin; Provisional 99.9 2.2E-24 4.8E-29 234.8 32.2 251 217-514 70-332 (493)
70 KOG0645 WD40 repeat protein [G 99.9 7.8E-24 1.7E-28 199.7 30.9 205 301-513 6-225 (312)
71 KOG0306 WD40-repeat-containing 99.9 7.8E-24 1.7E-28 223.5 33.6 230 303-535 367-603 (888)
72 PTZ00420 coronin; Provisional 99.9 6E-24 1.3E-28 232.5 33.7 228 300-536 65-318 (568)
73 KOG0278 Serine/threonine kinas 99.9 4.7E-26 1E-30 211.9 14.2 245 216-517 53-301 (334)
74 PTZ00420 coronin; Provisional 99.9 5.1E-24 1.1E-28 233.0 32.7 238 215-495 67-318 (568)
75 KOG0299 U3 snoRNP-associated p 99.9 1.7E-24 3.6E-29 217.7 24.9 290 215-543 135-444 (479)
76 KOG0268 Sof1-like rRNA process 99.9 5E-26 1.1E-30 222.0 13.4 295 203-516 48-348 (433)
77 KOG0289 mRNA splicing factor [ 99.9 5.1E-24 1.1E-28 212.4 26.4 269 222-545 219-497 (506)
78 KOG0305 Anaphase promoting com 99.9 2.5E-24 5.4E-29 226.4 25.0 240 221-515 216-463 (484)
79 KOG0313 Microtubule binding pr 99.9 3.5E-24 7.6E-29 210.5 24.0 261 220-548 103-402 (423)
80 KOG0264 Nucleosome remodeling 99.9 2.7E-24 5.9E-29 216.4 22.3 255 220-515 122-406 (422)
81 KOG0310 Conserved WD40 repeat- 99.9 3.5E-24 7.6E-29 217.0 23.1 271 221-546 25-301 (487)
82 KOG0316 Conserved WD40 repeat- 99.9 4.9E-24 1.1E-28 197.0 21.4 245 212-512 49-298 (307)
83 KOG0973 Histone transcription 99.9 4.5E-24 9.8E-29 235.1 25.0 266 216-516 63-358 (942)
84 KOG0274 Cdc4 and related F-box 99.9 1.2E-23 2.5E-28 229.5 27.4 246 212-519 239-488 (537)
85 KOG0643 Translation initiation 99.9 2.1E-23 4.5E-28 196.3 24.8 290 304-595 5-310 (327)
86 KOG0640 mRNA cleavage stimulat 99.9 4.4E-24 9.5E-29 204.3 20.1 213 301-519 104-341 (430)
87 KOG0289 mRNA splicing factor [ 99.9 1.4E-23 3.1E-28 209.2 24.2 250 210-512 249-505 (506)
88 KOG0641 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 186.6 28.2 249 215-513 82-349 (350)
89 KOG1407 WD40 repeat protein [F 99.9 4.5E-24 9.7E-29 200.2 19.2 235 303-546 14-253 (313)
90 KOG0274 Cdc4 and related F-box 99.9 6.9E-23 1.5E-27 223.4 29.0 241 220-523 206-451 (537)
91 KOG0308 Conserved WD40 repeat- 99.9 1.8E-23 4E-28 217.8 23.2 250 220-517 19-289 (735)
92 KOG0300 WD40 repeat-containing 99.9 1.6E-23 3.5E-28 200.9 20.7 255 211-519 137-434 (481)
93 KOG0299 U3 snoRNP-associated p 99.9 2E-23 4.4E-28 209.9 22.2 235 219-501 199-443 (479)
94 KOG0973 Histone transcription 99.9 6.1E-23 1.3E-27 226.2 27.2 288 220-544 11-345 (942)
95 KOG1332 Vesicle coat complex C 99.9 2.9E-23 6.3E-28 193.0 17.9 249 218-513 7-286 (299)
96 KOG0283 WD40 repeat-containing 99.9 3.6E-23 7.8E-28 222.8 21.4 231 302-543 259-565 (712)
97 KOG2048 WD40 repeat protein [G 99.9 2.3E-21 5.1E-26 203.4 33.9 256 213-517 16-279 (691)
98 KOG0277 Peroxisomal targeting 99.9 1.4E-22 3.1E-27 189.5 20.7 202 308-516 59-268 (311)
99 KOG1274 WD40 repeat protein [G 99.9 7.3E-22 1.6E-26 213.5 29.1 272 220-541 11-287 (933)
100 KOG1273 WD40 repeat protein [G 99.9 2.1E-22 4.5E-27 193.5 21.4 282 225-571 26-325 (405)
101 KOG0275 Conserved WD40 repeat- 99.9 1.8E-23 3.8E-28 201.0 13.9 242 218-511 259-507 (508)
102 KOG0772 Uncharacterized conser 99.9 1.6E-22 3.4E-27 205.5 20.9 244 298-544 156-429 (641)
103 KOG0269 WD40 repeat-containing 99.9 1E-22 2.2E-27 216.0 19.2 246 225-518 90-345 (839)
104 KOG0300 WD40 repeat-containing 99.9 3.7E-22 8.1E-27 191.5 19.9 285 212-516 180-479 (481)
105 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.6E-25 194.1 32.7 256 215-520 24-286 (300)
106 KOG0639 Transducin-like enhanc 99.9 5E-22 1.1E-26 201.0 19.3 275 220-548 417-698 (705)
107 KOG1539 WD repeat protein [Gen 99.9 8.2E-21 1.8E-25 203.2 29.6 284 208-544 188-637 (910)
108 KOG0641 WD40 repeat protein [G 99.9 5.5E-20 1.2E-24 169.0 30.4 263 220-515 30-305 (350)
109 KOG0647 mRNA export protein (c 99.9 5E-21 1.1E-25 183.3 23.3 239 212-501 62-311 (347)
110 KOG0301 Phospholipase A2-activ 99.9 3E-21 6.4E-26 202.9 23.4 272 212-545 4-280 (745)
111 KOG0650 WD40 repeat nucleolar 99.9 3.9E-21 8.5E-26 198.6 22.9 291 211-510 389-732 (733)
112 KOG2055 WD40 repeat protein [G 99.9 7.9E-21 1.7E-25 191.2 24.3 275 221-546 212-504 (514)
113 KOG0302 Ribosome Assembly prot 99.9 3.8E-21 8.3E-26 189.0 21.2 259 219-511 148-436 (440)
114 KOG0270 WD40 repeat-containing 99.9 2.8E-21 6E-26 193.9 20.3 253 234-516 192-452 (463)
115 KOG4283 Transcription-coupled 99.9 4.8E-21 1E-25 182.5 20.7 264 219-513 40-334 (397)
116 KOG0267 Microtubule severing p 99.9 1.2E-22 2.7E-27 213.9 10.3 238 214-505 20-260 (825)
117 KOG0301 Phospholipase A2-activ 99.9 5.3E-21 1.1E-25 201.0 22.2 234 216-513 51-288 (745)
118 KOG1446 Histone H3 (Lys4) meth 99.9 1.4E-19 3.1E-24 175.1 28.9 276 300-591 5-294 (311)
119 KOG1036 Mitotic spindle checkp 99.9 2.8E-20 6.1E-25 179.0 23.7 233 220-503 52-294 (323)
120 KOG0646 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 190.6 22.0 237 221-534 80-329 (476)
121 KOG0639 Transducin-like enhanc 99.9 2.3E-21 5E-26 196.2 16.4 238 221-512 464-703 (705)
122 KOG0321 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 195.7 22.5 268 227-534 54-370 (720)
123 KOG0264 Nucleosome remodeling 99.9 7E-21 1.5E-25 191.9 19.3 218 215-473 170-406 (422)
124 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.4E-24 174.6 26.3 251 218-513 9-318 (361)
125 KOG2106 Uncharacterized conser 99.9 1.4E-19 3.1E-24 183.8 28.1 308 215-541 280-613 (626)
126 KOG4328 WD40 protein [Function 99.9 2.7E-20 5.8E-25 187.3 22.7 294 207-547 171-487 (498)
127 KOG1063 RNA polymerase II elon 99.9 4E-20 8.6E-25 194.3 24.7 372 211-604 180-651 (764)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.1E-19 8.8E-24 183.7 32.1 257 234-545 1-269 (300)
129 KOG0305 Anaphase promoting com 99.9 7.1E-20 1.5E-24 192.9 26.1 227 309-546 217-453 (484)
130 KOG2106 Uncharacterized conser 99.9 5.2E-19 1.1E-23 179.7 30.6 265 218-510 196-518 (626)
131 KOG0268 Sof1-like rRNA process 99.8 1.1E-20 2.3E-25 184.9 14.7 232 301-546 58-337 (433)
132 KOG0308 Conserved WD40 repeat- 99.8 1.4E-20 3.1E-25 196.3 15.4 248 215-514 66-328 (735)
133 KOG4227 WD40 repeat protein [G 99.8 2.1E-19 4.5E-24 177.0 22.3 287 213-541 47-374 (609)
134 KOG1332 Vesicle coat complex C 99.8 7.6E-20 1.6E-24 170.4 16.9 235 306-547 8-279 (299)
135 KOG2096 WD40 repeat protein [G 99.8 2.9E-19 6.4E-24 172.1 20.9 277 302-594 79-395 (420)
136 KOG0269 WD40 repeat-containing 99.8 1.2E-19 2.7E-24 192.8 19.5 229 311-546 89-331 (839)
137 KOG1445 Tumor-specific antigen 99.8 1.2E-19 2.7E-24 188.1 18.7 152 394-545 630-785 (1012)
138 KOG1408 WD40 repeat protein [F 99.8 1.9E-19 4.2E-24 189.0 20.0 244 220-514 457-714 (1080)
139 KOG0267 Microtubule severing p 99.8 1.1E-20 2.5E-25 199.2 9.5 227 305-542 24-256 (825)
140 KOG1063 RNA polymerase II elon 99.8 8.9E-19 1.9E-23 184.3 23.1 279 216-515 261-650 (764)
141 KOG0321 WD40 repeat-containing 99.8 5.1E-19 1.1E-23 184.5 20.6 250 218-516 96-394 (720)
142 KOG4283 Transcription-coupled 99.8 1.3E-18 2.8E-23 166.1 21.4 205 306-517 40-280 (397)
143 KOG0294 WD40 repeat-containing 99.8 8.1E-19 1.8E-23 169.2 19.9 202 215-472 76-282 (362)
144 KOG4328 WD40 protein [Function 99.8 2.2E-18 4.8E-23 173.6 23.7 207 301-513 178-399 (498)
145 KOG0646 WD40 repeat protein [G 99.8 4.6E-19 1E-23 179.1 17.9 202 206-451 107-330 (476)
146 KOG2048 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 174.8 29.3 285 210-546 98-404 (691)
147 KOG0303 Actin-binding protein 99.8 2E-18 4.4E-23 170.8 21.2 235 217-495 76-321 (472)
148 KOG2919 Guanine nucleotide-bin 99.8 4.5E-18 9.7E-23 164.4 23.1 277 225-544 52-360 (406)
149 KOG1034 Transcriptional repres 99.8 3.1E-18 6.6E-23 166.0 18.7 282 215-542 31-371 (385)
150 KOG0642 Cell-cycle nuclear pro 99.8 7.6E-19 1.7E-23 181.3 14.5 260 217-517 289-565 (577)
151 KOG0650 WD40 repeat nucleolar 99.8 2.1E-17 4.5E-22 171.3 24.7 242 296-546 387-672 (733)
152 KOG0270 WD40 repeat-containing 99.8 3.8E-18 8.2E-23 171.5 17.3 206 218-473 239-451 (463)
153 KOG0307 Vesicle coat complex C 99.8 8.4E-19 1.8E-23 194.6 13.2 249 223-516 65-330 (1049)
154 KOG0302 Ribosome Assembly prot 99.8 4.7E-18 1E-22 167.4 16.8 203 214-463 203-431 (440)
155 KOG1539 WD repeat protein [Gen 99.8 2.9E-16 6.2E-21 168.7 31.7 405 214-662 106-649 (910)
156 KOG1408 WD40 repeat protein [F 99.8 2.1E-17 4.6E-22 173.8 22.4 313 218-541 365-700 (1080)
157 KOG1034 Transcriptional repres 99.8 9.4E-18 2E-22 162.7 17.9 245 220-513 87-383 (385)
158 KOG1538 Uncharacterized conser 99.8 1.5E-17 3.4E-22 173.5 20.6 267 224-547 14-286 (1081)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.9E-17 4.1E-22 167.9 20.0 215 313-535 83-304 (673)
160 KOG1273 WD40 repeat protein [G 99.8 8.6E-17 1.9E-21 155.1 21.3 226 312-543 26-268 (405)
161 KOG1009 Chromatin assembly com 99.8 4E-17 8.7E-22 162.5 19.3 267 214-517 57-376 (434)
162 KOG1274 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 173.5 24.5 232 221-510 55-297 (933)
163 KOG1334 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 169.4 15.4 296 212-567 132-465 (559)
164 KOG0303 Actin-binding protein 99.8 7.5E-17 1.6E-21 159.8 20.2 206 302-516 74-297 (472)
165 KOG0644 Uncharacterized conser 99.8 1.5E-18 3.3E-23 185.4 8.9 266 212-542 180-456 (1113)
166 KOG0307 Vesicle coat complex C 99.7 5.7E-18 1.2E-22 188.0 13.0 227 309-542 64-315 (1049)
167 KOG0290 Conserved WD40 repeat- 99.7 4E-16 8.7E-21 149.0 22.5 233 306-546 93-358 (364)
168 KOG1188 WD40 repeat protein [G 99.7 8.2E-17 1.8E-21 157.1 16.8 258 212-514 60-347 (376)
169 KOG1538 Uncharacterized conser 99.7 1.3E-16 2.8E-21 166.7 19.2 246 208-514 39-294 (1081)
170 KOG1240 Protein kinase contain 99.7 2.6E-15 5.7E-20 167.1 29.4 264 210-517 1036-1338(1431)
171 KOG1009 Chromatin assembly com 99.7 1.5E-15 3.2E-20 151.4 24.4 284 222-546 13-364 (434)
172 KOG2445 Nuclear pore complex c 99.7 2.6E-15 5.6E-20 144.7 24.6 257 306-567 10-317 (361)
173 KOG0322 G-protein beta subunit 99.7 2.6E-16 5.6E-21 148.5 17.0 245 215-512 7-322 (323)
174 KOG4378 Nuclear protein COP1 [ 99.7 3.3E-16 7.1E-21 159.1 18.4 191 210-451 109-304 (673)
175 KOG1310 WD40 repeat protein [G 99.7 1E-16 2.2E-21 164.5 13.7 245 208-518 36-308 (758)
176 KOG1517 Guanine nucleotide bin 99.7 3.3E-15 7.1E-20 163.9 25.2 273 222-545 1064-1372(1387)
177 COG2319 FOG: WD40 repeat [Gene 99.7 8.3E-14 1.8E-18 149.0 35.6 275 212-541 145-429 (466)
178 COG2319 FOG: WD40 repeat [Gene 99.7 1E-13 2.2E-18 148.3 34.5 273 217-542 60-346 (466)
179 KOG1587 Cytoplasmic dynein int 99.7 4E-15 8.7E-20 161.6 23.1 248 221-515 241-518 (555)
180 PRK11028 6-phosphogluconolacto 99.7 3.6E-14 7.8E-19 149.5 29.7 248 221-514 33-305 (330)
181 KOG1963 WD40 repeat protein [G 99.7 4.3E-14 9.3E-19 153.7 27.7 284 220-546 203-531 (792)
182 KOG0290 Conserved WD40 repeat- 99.7 8E-15 1.7E-19 140.2 19.4 245 220-509 94-361 (364)
183 KOG0771 Prolactin regulatory e 99.6 2.3E-15 4.9E-20 151.3 14.6 192 226-471 148-354 (398)
184 KOG1524 WD40 repeat-containing 99.6 9.7E-15 2.1E-19 149.8 18.4 266 220-510 12-283 (737)
185 KOG4227 WD40 repeat protein [G 99.6 1.5E-14 3.1E-19 143.1 18.9 298 302-605 49-391 (609)
186 KOG0649 WD40 repeat protein [G 99.6 2.7E-14 5.8E-19 133.4 19.6 245 223-515 11-276 (325)
187 KOG1007 WD repeat protein TSSC 99.6 2.1E-14 4.6E-19 137.2 19.2 255 214-514 55-362 (370)
188 KOG2919 Guanine nucleotide-bin 99.6 8.2E-14 1.8E-18 135.2 23.1 204 312-517 52-285 (406)
189 PRK11028 6-phosphogluconolacto 99.6 7.1E-13 1.5E-17 139.7 31.8 228 310-544 35-293 (330)
190 KOG1188 WD40 repeat protein [G 99.6 4.5E-14 9.8E-19 138.1 20.6 193 321-518 41-247 (376)
191 PRK01742 tolB translocation pr 99.6 8.4E-14 1.8E-18 151.7 25.2 197 302-512 196-400 (429)
192 KOG1523 Actin-related protein 99.6 8.4E-14 1.8E-18 135.2 21.9 241 220-505 8-270 (361)
193 KOG2321 WD40 repeat protein [G 99.6 8.2E-14 1.8E-18 144.3 20.7 295 204-514 34-344 (703)
194 KOG2110 Uncharacterized conser 99.6 6.3E-13 1.4E-17 131.5 25.9 236 222-516 5-251 (391)
195 KOG2139 WD40 repeat protein [G 99.6 3.2E-13 7E-18 133.0 23.2 272 222-548 98-425 (445)
196 KOG1310 WD40 repeat protein [G 99.6 9E-15 2E-19 150.4 12.9 235 302-549 43-298 (758)
197 KOG1587 Cytoplasmic dynein int 99.6 2.1E-13 4.5E-18 148.3 24.0 236 308-545 241-507 (555)
198 KOG1517 Guanine nucleotide bin 99.6 1E-13 2.3E-18 152.3 21.4 255 222-516 1109-1384(1387)
199 KOG0649 WD40 repeat protein [G 99.6 6.8E-13 1.5E-17 124.1 22.5 241 219-510 59-313 (325)
200 KOG0642 Cell-cycle nuclear pro 99.6 3.1E-14 6.8E-19 147.5 14.9 219 211-473 333-563 (577)
201 PRK01742 tolB translocation pr 99.6 1.9E-13 4.1E-18 148.9 22.0 203 329-546 183-393 (429)
202 KOG1007 WD repeat protein TSSC 99.6 1.2E-13 2.5E-18 132.2 17.2 220 212-471 112-361 (370)
203 PRK03629 tolB translocation pr 99.6 1.7E-12 3.7E-17 141.2 28.6 203 303-517 192-410 (429)
204 KOG1445 Tumor-specific antigen 99.6 6.2E-14 1.4E-18 146.2 16.1 207 221-471 626-844 (1012)
205 KOG1963 WD40 repeat protein [G 99.6 8.3E-13 1.8E-17 143.8 25.1 275 220-545 14-313 (792)
206 KOG4497 Uncharacterized conser 99.6 3E-12 6.5E-17 124.6 26.1 299 227-544 13-422 (447)
207 KOG3881 Uncharacterized conser 99.5 1E-12 2.3E-17 130.9 22.1 223 304-534 100-341 (412)
208 KOG0771 Prolactin regulatory e 99.5 1.7E-13 3.6E-18 138.0 16.1 197 313-514 148-355 (398)
209 KOG2394 WD40 protein DMR-N9 [G 99.5 6.8E-13 1.5E-17 136.7 20.0 191 319-517 183-456 (636)
210 KOG0322 G-protein beta subunit 99.5 2.7E-13 5.8E-18 128.3 15.2 244 299-546 4-315 (323)
211 PRK04922 tolB translocation pr 99.5 2.7E-12 5.9E-17 140.1 25.7 203 302-516 196-414 (433)
212 KOG2111 Uncharacterized conser 99.5 1.3E-11 2.9E-16 120.0 26.9 276 225-556 8-313 (346)
213 PRK05137 tolB translocation pr 99.5 8E-12 1.7E-16 136.6 28.8 203 302-517 194-416 (435)
214 KOG1272 WD40-repeat-containing 99.5 6.4E-14 1.4E-18 141.9 11.2 228 312-551 132-360 (545)
215 KOG1523 Actin-related protein 99.5 2E-12 4.3E-17 125.7 21.0 234 304-544 5-269 (361)
216 PRK02889 tolB translocation pr 99.5 8.2E-12 1.8E-16 136.0 28.0 201 303-513 189-403 (427)
217 PRK03629 tolB translocation pr 99.5 3.9E-12 8.5E-17 138.4 24.9 219 216-493 192-427 (429)
218 KOG2110 Uncharacterized conser 99.5 6.2E-12 1.3E-16 124.6 22.6 234 222-514 87-331 (391)
219 PRK02889 tolB translocation pr 99.5 5E-12 1.1E-16 137.6 24.1 209 330-548 176-394 (427)
220 PRK05137 tolB translocation pr 99.5 8.1E-12 1.7E-16 136.5 25.4 221 215-493 194-432 (435)
221 KOG1524 WD40 repeat-containing 99.4 2.5E-12 5.5E-17 132.3 17.0 224 307-541 12-243 (737)
222 PRK04922 tolB translocation pr 99.4 1.1E-11 2.4E-16 135.3 23.3 221 215-493 196-432 (433)
223 KOG2139 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 121.3 21.3 226 310-547 99-368 (445)
224 KOG0644 Uncharacterized conser 99.4 4.1E-13 8.9E-18 144.4 10.0 243 210-516 220-471 (1113)
225 KOG1354 Serine/threonine prote 99.4 6.5E-12 1.4E-16 123.1 17.3 265 221-517 24-363 (433)
226 KOG1272 WD40-repeat-containing 99.4 6.4E-13 1.4E-17 134.7 10.6 263 225-546 132-401 (545)
227 PF08662 eIF2A: Eukaryotic tra 99.4 2.4E-11 5.3E-16 116.9 19.7 113 308-424 58-182 (194)
228 TIGR02800 propeller_TolB tol-p 99.4 2.8E-10 6.1E-15 124.0 27.8 201 302-514 182-398 (417)
229 KOG3881 Uncharacterized conser 99.3 7.7E-11 1.7E-15 117.7 19.2 223 218-493 101-341 (412)
230 PRK04792 tolB translocation pr 99.3 3.7E-10 7.9E-15 123.5 26.6 203 303-516 211-428 (448)
231 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-10 2.6E-15 112.2 20.0 148 354-515 10-181 (194)
232 KOG2394 WD40 protein DMR-N9 [G 99.3 2.9E-11 6.2E-16 124.9 16.4 162 222-401 219-384 (636)
233 PF02239 Cytochrom_D1: Cytochr 99.3 1.7E-09 3.6E-14 114.6 30.5 240 300-547 27-339 (369)
234 PRK00178 tolB translocation pr 99.3 3.8E-10 8.2E-15 123.4 25.8 206 299-515 188-408 (430)
235 KOG1240 Protein kinase contain 99.3 1.7E-10 3.6E-15 129.6 22.6 223 288-519 1027-1279(1431)
236 TIGR02800 propeller_TolB tol-p 99.3 2.2E-10 4.8E-15 124.8 23.6 199 216-470 183-396 (417)
237 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 108.2 34.4 248 224-513 38-322 (345)
238 KOG2041 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 122.9 19.0 287 222-542 14-326 (1189)
239 KOG1334 WD40 repeat protein [G 99.3 2.1E-11 4.6E-16 124.5 12.3 254 218-517 181-470 (559)
240 PRK04792 tolB translocation pr 99.3 5.2E-10 1.1E-14 122.3 24.2 220 216-493 211-446 (448)
241 KOG2321 WD40 repeat protein [G 99.3 2.9E-10 6.2E-15 118.5 20.5 232 307-542 49-331 (703)
242 PRK00178 tolB translocation pr 99.3 8.5E-10 1.8E-14 120.7 24.5 220 216-493 192-427 (430)
243 KOG2315 Predicted translation 99.3 3E-09 6.4E-14 111.1 26.2 196 307-515 163-392 (566)
244 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 113.4 22.6 213 322-547 72-302 (541)
245 PRK01029 tolB translocation pr 99.2 4.8E-09 1E-13 113.9 25.9 208 302-517 177-407 (428)
246 PF02239 Cytochrom_D1: Cytochr 99.2 1.3E-08 2.8E-13 107.9 27.5 196 322-519 8-208 (369)
247 KOG2111 Uncharacterized conser 99.2 1.9E-08 4.2E-13 98.4 25.7 163 300-472 86-257 (346)
248 KOG1354 Serine/threonine prote 99.2 7.4E-10 1.6E-14 108.9 16.0 239 222-472 84-360 (433)
249 KOG4497 Uncharacterized conser 99.2 2.5E-10 5.5E-15 111.4 12.4 190 309-514 48-241 (447)
250 KOG1409 Uncharacterized conser 99.2 1E-09 2.2E-14 108.0 16.6 240 211-471 13-270 (404)
251 PF10282 Lactonase: Lactonase, 99.1 1.9E-07 4.1E-12 98.8 33.8 235 310-547 37-314 (345)
252 PRK01029 tolB translocation pr 99.1 8E-09 1.7E-13 112.2 23.3 208 330-545 165-391 (428)
253 KOG0974 WD-repeat protein WDR6 99.1 2.1E-09 4.6E-14 119.5 18.0 190 315-515 93-290 (967)
254 COG2706 3-carboxymuconate cycl 99.1 7.2E-07 1.6E-11 89.4 32.5 254 219-515 36-323 (346)
255 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.5E-07 7.6E-12 95.0 31.4 248 230-520 53-337 (352)
256 PF04762 IKI3: IKI3 family; I 99.0 2.2E-07 4.8E-12 109.0 31.4 281 221-515 119-458 (928)
257 KOG0974 WD-repeat protein WDR6 99.0 2.2E-09 4.7E-14 119.5 13.4 148 228-423 139-290 (967)
258 COG5354 Uncharacterized protei 99.0 1.1E-07 2.4E-12 98.4 23.7 266 224-547 73-382 (561)
259 COG5170 CDC55 Serine/threonine 99.0 1.5E-08 3.3E-13 98.4 16.0 249 221-513 25-367 (460)
260 KOG0280 Uncharacterized conser 99.0 5.1E-08 1.1E-12 94.4 18.8 198 311-515 123-335 (339)
261 PLN02919 haloacid dehalogenase 99.0 5.4E-07 1.2E-11 107.8 31.4 206 311-517 625-892 (1057)
262 KOG4532 WD40-like repeat conta 99.0 1.6E-07 3.4E-12 89.9 21.1 190 322-515 130-333 (344)
263 COG2706 3-carboxymuconate cycl 98.9 2.4E-06 5.2E-11 85.7 30.1 236 306-547 36-313 (346)
264 KOG1064 RAVE (regulator of V-A 98.9 6.9E-09 1.5E-13 120.5 13.6 191 305-517 2204-2402(2439)
265 KOG2314 Translation initiation 98.9 3.5E-07 7.5E-12 95.6 23.9 282 220-515 248-575 (698)
266 PRK04043 tolB translocation pr 98.9 5E-07 1.1E-11 97.6 26.1 202 330-546 169-389 (419)
267 PF15492 Nbas_N: Neuroblastoma 98.9 1.1E-06 2.3E-11 85.8 25.1 188 312-517 46-263 (282)
268 PRK04043 tolB translocation pr 98.9 6.2E-07 1.4E-11 96.9 25.8 192 311-516 189-403 (419)
269 KOG1064 RAVE (regulator of V-A 98.9 9.7E-09 2.1E-13 119.4 12.0 189 218-473 2204-2400(2439)
270 TIGR02658 TTQ_MADH_Hv methylam 98.9 7.3E-06 1.6E-10 85.3 31.7 219 317-544 53-318 (352)
271 KOG2041 WD40 repeat protein [G 98.8 7.2E-08 1.5E-12 103.0 16.2 246 208-509 57-333 (1189)
272 KOG0280 Uncharacterized conser 98.8 7E-08 1.5E-12 93.5 14.8 198 225-468 124-330 (339)
273 KOG2314 Translation initiation 98.8 2.2E-06 4.7E-11 89.8 26.6 295 225-544 213-557 (698)
274 KOG4190 Uncharacterized conser 98.8 7.8E-09 1.7E-13 107.1 8.7 246 215-511 728-986 (1034)
275 PF08450 SGL: SMP-30/Gluconola 98.8 1.4E-05 3.1E-10 80.3 31.7 221 227-502 4-244 (246)
276 KOG4547 WD40 repeat-containing 98.8 4.8E-07 1E-11 95.6 21.2 183 322-514 7-221 (541)
277 COG4946 Uncharacterized protei 98.8 8.6E-07 1.9E-11 91.0 21.6 214 319-543 276-507 (668)
278 COG4946 Uncharacterized protei 98.8 2.1E-06 4.5E-11 88.3 24.0 144 220-410 357-507 (668)
279 COG5354 Uncharacterized protei 98.8 1.4E-06 3E-11 90.5 22.6 266 221-547 31-338 (561)
280 KOG1409 Uncharacterized conser 98.8 1.1E-07 2.3E-12 94.0 13.1 215 300-516 15-273 (404)
281 KOG4190 Uncharacterized conser 98.7 5.1E-08 1.1E-12 101.2 10.4 212 298-516 724-951 (1034)
282 KOG0309 Conserved WD40 repeat- 98.7 1.4E-07 3E-12 101.3 12.8 276 222-515 24-341 (1081)
283 KOG1912 WD40 repeat protein [G 98.7 1.2E-06 2.6E-11 94.9 18.6 258 210-519 43-370 (1062)
284 PLN02919 haloacid dehalogenase 98.7 1E-05 2.3E-10 96.9 28.5 228 313-544 571-878 (1057)
285 KOG2315 Predicted translation 98.6 5.9E-06 1.3E-10 87.0 22.6 197 220-471 163-390 (566)
286 PF08450 SGL: SMP-30/Gluconola 98.6 6.9E-05 1.5E-09 75.3 28.7 215 314-542 4-243 (246)
287 KOG4532 WD40-like repeat conta 98.6 8.7E-06 1.9E-10 78.2 20.0 191 320-517 84-286 (344)
288 KOG2695 WD40 repeat protein [G 98.6 2.4E-07 5.2E-12 91.6 9.7 151 366-520 228-383 (425)
289 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3E-12 65.1 5.7 37 214-250 3-39 (39)
290 TIGR03300 assembly_YfgL outer 98.5 6.6E-05 1.4E-09 80.6 28.5 185 320-521 145-346 (377)
291 KOG3914 WD repeat protein WDR4 98.5 9E-07 2E-11 89.5 12.8 160 224-426 64-228 (390)
292 PF13360 PQQ_2: PQQ-like domai 98.5 4.4E-05 9.5E-10 76.1 24.8 193 319-519 35-236 (238)
293 KOG0882 Cyclophilin-related pe 98.5 1.2E-06 2.5E-11 89.6 12.7 253 220-517 7-309 (558)
294 KOG1912 WD40 repeat protein [G 98.5 1.2E-05 2.6E-10 87.3 20.3 244 224-515 17-306 (1062)
295 PF04762 IKI3: IKI3 family; I 98.5 0.0003 6.4E-09 83.1 33.6 286 221-516 208-567 (928)
296 KOG4714 Nucleoporin [Nuclear s 98.5 2.6E-06 5.6E-11 81.5 13.2 145 319-471 100-254 (319)
297 TIGR03300 assembly_YfgL outer 98.5 6.5E-05 1.4E-09 80.7 26.1 173 321-510 191-376 (377)
298 COG5170 CDC55 Serine/threonine 98.4 7.2E-07 1.6E-11 87.0 8.7 235 223-468 86-364 (460)
299 KOG1832 HIV-1 Vpr-binding prot 98.4 1.5E-07 3.2E-12 102.8 4.4 227 205-501 1084-1319(1516)
300 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00022 4.8E-09 75.7 28.0 234 309-547 42-350 (353)
301 KOG4714 Nucleoporin [Nuclear s 98.4 2.9E-06 6.4E-11 81.1 11.6 71 311-381 181-255 (319)
302 KOG0309 Conserved WD40 repeat- 98.4 8E-07 1.7E-11 95.6 8.4 212 216-471 108-339 (1081)
303 KOG0882 Cyclophilin-related pe 98.4 3.7E-06 8.1E-11 86.0 11.9 207 307-520 7-238 (558)
304 KOG3914 WD repeat protein WDR4 98.3 9.3E-06 2E-10 82.4 13.8 152 313-473 66-225 (390)
305 KOG1275 PAB-dependent poly(A) 98.3 7.8E-05 1.7E-09 82.7 20.6 177 322-511 149-340 (1118)
306 PF07433 DUF1513: Protein of u 98.3 0.0013 2.7E-08 66.5 27.2 230 226-506 8-278 (305)
307 KOG2066 Vacuolar assembly/sort 98.3 3.6E-05 7.8E-10 84.4 17.3 187 222-471 39-233 (846)
308 PF15492 Nbas_N: Neuroblastoma 98.2 0.00042 9.1E-09 67.9 22.3 199 225-475 46-263 (282)
309 PF00400 WD40: WD domain, G-be 98.2 2.3E-06 4.9E-11 58.9 5.0 37 300-336 2-39 (39)
310 KOG1645 RING-finger-containing 98.2 9.4E-05 2E-09 75.1 18.2 255 210-514 181-462 (463)
311 KOG2114 Vacuolar assembly/sort 98.2 0.00061 1.3E-08 75.6 25.5 198 224-478 27-250 (933)
312 KOG2066 Vacuolar assembly/sort 98.2 2.4E-05 5.3E-10 85.7 13.8 179 348-549 38-229 (846)
313 KOG1008 Uncharacterized conser 98.2 3.7E-06 8.1E-11 89.7 7.1 230 309-547 56-315 (783)
314 KOG1832 HIV-1 Vpr-binding prot 98.2 1.6E-06 3.5E-11 95.0 4.4 221 300-542 1092-1319(1516)
315 PF08596 Lgl_C: Lethal giant l 98.1 0.0019 4.2E-08 68.9 27.5 289 224-544 3-326 (395)
316 PF13360 PQQ_2: PQQ-like domai 98.1 0.0013 2.9E-08 65.3 24.1 206 329-543 2-219 (238)
317 PF14583 Pectate_lyase22: Olig 98.1 0.0036 7.8E-08 65.2 27.2 228 315-548 86-374 (386)
318 KOG1920 IkappaB kinase complex 98.1 0.0007 1.5E-08 77.9 23.3 198 222-472 68-323 (1265)
319 KOG1920 IkappaB kinase complex 98.1 0.0018 3.9E-08 74.7 26.2 196 310-515 69-324 (1265)
320 PF11768 DUF3312: Protein of u 98.1 0.00024 5.2E-09 76.2 18.3 151 391-548 205-370 (545)
321 KOG2695 WD40 repeat protein [G 98.1 1.2E-05 2.6E-10 79.9 7.8 121 308-428 251-383 (425)
322 PRK11138 outer membrane biogen 98.0 0.002 4.4E-08 69.5 25.9 178 321-512 206-393 (394)
323 KOG2114 Vacuolar assembly/sort 98.0 0.0007 1.5E-08 75.2 21.8 216 317-542 31-271 (933)
324 PF07433 DUF1513: Protein of u 98.0 0.0039 8.5E-08 63.0 25.5 204 312-520 7-254 (305)
325 KOG1275 PAB-dependent poly(A) 98.0 0.00011 2.4E-09 81.6 15.5 149 312-469 180-340 (1118)
326 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.00049 1.1E-08 73.1 19.7 254 329-589 22-344 (353)
327 PRK02888 nitrous-oxide reducta 98.0 0.002 4.3E-08 71.0 23.9 185 317-514 200-405 (635)
328 PF11768 DUF3312: Protein of u 98.0 0.0013 2.9E-08 70.7 21.5 131 331-471 185-329 (545)
329 PF04053 Coatomer_WDAD: Coatom 98.0 0.0021 4.5E-08 69.6 23.5 225 220-515 30-264 (443)
330 PF06433 Me-amine-dh_H: Methyl 97.9 0.0099 2.1E-07 60.9 26.8 202 315-520 100-327 (342)
331 PF06977 SdiA-regulated: SdiA- 97.9 0.0065 1.4E-07 60.4 24.7 205 303-510 15-247 (248)
332 KOG1645 RING-finger-containing 97.9 0.00028 6E-09 71.8 14.8 84 300-383 184-269 (463)
333 KOG3617 WD40 and TPR repeat-co 97.9 0.00076 1.6E-08 74.4 18.2 68 312-380 62-131 (1416)
334 COG0823 TolB Periplasmic compo 97.9 0.00094 2E-08 72.0 18.8 193 302-504 185-390 (425)
335 PRK11138 outer membrane biogen 97.9 0.0031 6.6E-08 68.2 23.1 191 320-520 120-319 (394)
336 KOG3621 WD40 repeat-containing 97.7 0.0087 1.9E-07 65.5 22.5 116 221-381 32-155 (726)
337 PF08553 VID27: VID27 cytoplas 97.7 0.00095 2.1E-08 76.1 15.7 146 361-512 492-646 (794)
338 PRK02888 nitrous-oxide reducta 97.6 0.0046 9.9E-08 68.2 19.3 108 361-472 287-405 (635)
339 PF03178 CPSF_A: CPSF A subuni 97.6 0.029 6.2E-07 58.8 24.9 172 330-510 62-262 (321)
340 KOG3621 WD40 repeat-containing 97.6 0.0013 2.8E-08 71.7 14.6 163 348-516 32-200 (726)
341 COG0823 TolB Periplasmic compo 97.6 0.0024 5.2E-08 68.9 16.8 188 348-546 191-391 (425)
342 PF03178 CPSF_A: CPSF A subuni 97.5 0.071 1.5E-06 55.8 27.2 173 330-514 2-203 (321)
343 PF02897 Peptidase_S9_N: Proly 97.5 0.14 3.1E-06 55.6 30.2 244 223-518 124-409 (414)
344 COG3391 Uncharacterized conser 97.5 0.029 6.4E-07 60.1 24.1 202 312-517 76-287 (381)
345 PF00780 CNH: CNH domain; Int 97.5 0.066 1.4E-06 54.5 25.8 196 312-520 38-262 (275)
346 PF04841 Vps16_N: Vps16, N-ter 97.4 0.072 1.6E-06 57.6 25.7 201 331-543 62-277 (410)
347 KOG1008 Uncharacterized conser 97.4 0.00011 2.3E-09 78.9 3.8 202 223-471 57-275 (783)
348 cd00216 PQQ_DH Dehydrogenases 97.4 0.075 1.6E-06 59.1 25.9 205 328-546 173-459 (488)
349 KOG3617 WD40 and TPR repeat-co 97.3 0.0045 9.8E-08 68.6 14.6 69 225-338 62-131 (1416)
350 COG3391 Uncharacterized conser 97.3 0.093 2E-06 56.3 24.9 225 311-545 32-273 (381)
351 PF06977 SdiA-regulated: SdiA- 97.3 0.047 1E-06 54.3 20.6 201 216-468 15-247 (248)
352 smart00320 WD40 WD40 repeats. 97.3 0.0005 1.1E-08 45.5 4.5 36 215-250 5-40 (40)
353 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.02 4.3E-07 48.7 14.8 100 312-417 2-110 (111)
354 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.062 1.3E-06 52.2 19.9 105 322-428 25-130 (354)
355 COG3386 Gluconolactonase [Carb 97.2 0.12 2.7E-06 53.2 23.0 179 317-503 74-275 (307)
356 KOG2395 Protein involved in va 97.2 0.0057 1.2E-07 64.8 13.1 145 365-513 349-500 (644)
357 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.021 4.6E-07 48.5 13.5 102 352-466 2-109 (111)
358 PF04841 Vps16_N: Vps16, N-ter 96.9 0.87 1.9E-05 49.3 28.4 179 300-495 71-271 (410)
359 PF08553 VID27: VID27 cytoplas 96.8 0.016 3.4E-07 66.4 14.0 135 325-469 499-645 (794)
360 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.15 3.2E-06 49.7 17.9 141 361-511 22-163 (354)
361 KOG4640 Anaphase-promoting com 96.7 0.0065 1.4E-07 65.7 8.9 91 223-359 21-115 (665)
362 smart00320 WD40 WD40 repeats. 96.7 0.0035 7.6E-08 41.1 4.6 37 300-336 3-40 (40)
363 PRK13616 lipoprotein LpqB; Pro 96.7 0.12 2.5E-06 58.5 19.1 185 308-505 348-560 (591)
364 cd00216 PQQ_DH Dehydrogenases 96.6 0.38 8.3E-06 53.5 23.0 155 321-479 111-327 (488)
365 PF04053 Coatomer_WDAD: Coatom 96.6 0.027 5.9E-07 61.1 13.5 134 390-546 31-166 (443)
366 KOG4640 Anaphase-promoting com 96.6 0.01 2.2E-07 64.2 9.3 91 309-401 20-115 (665)
367 PF02897 Peptidase_S9_N: Proly 96.4 1.6 3.5E-05 47.3 26.1 193 311-513 125-357 (414)
368 PF08596 Lgl_C: Lethal giant l 96.4 0.35 7.6E-06 51.8 20.0 174 215-427 79-296 (395)
369 PRK13616 lipoprotein LpqB; Pro 96.3 0.3 6.6E-06 55.2 19.7 144 312-467 399-564 (591)
370 PF05694 SBP56: 56kDa selenium 96.3 1.8 3.8E-05 46.1 23.6 154 318-472 138-343 (461)
371 COG3204 Uncharacterized protei 96.3 0.89 1.9E-05 45.5 19.9 165 306-471 82-263 (316)
372 PF05096 Glu_cyclase_2: Glutam 96.1 1.5 3.3E-05 43.7 21.2 188 223-459 45-249 (264)
373 KOG2444 WD40 repeat protein [G 96.1 0.0077 1.7E-07 57.5 4.9 141 365-515 33-179 (238)
374 KOG4441 Proteins containing BT 96.0 0.44 9.4E-06 53.9 18.8 195 312-515 325-548 (571)
375 KOG2395 Protein involved in va 95.9 0.094 2E-06 55.9 12.3 137 322-469 348-498 (644)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.9 3.8 8.3E-05 45.9 26.4 77 464-541 442-520 (527)
377 PF14583 Pectate_lyase22: Olig 95.8 2.6 5.6E-05 44.4 22.0 219 315-543 41-301 (386)
378 PF06433 Me-amine-dh_H: Methyl 95.7 3 6.5E-05 43.2 23.6 143 322-473 149-322 (342)
379 COG3490 Uncharacterized protei 95.7 0.46 9.9E-06 47.1 15.2 184 229-469 120-346 (366)
380 PF00780 CNH: CNH domain; Int 95.6 2.3 5E-05 43.1 21.4 137 321-471 8-165 (275)
381 PHA02713 hypothetical protein; 95.6 0.41 8.8E-06 54.1 16.9 183 322-515 306-535 (557)
382 KOG1897 Damage-specific DNA bi 95.5 6.5 0.00014 45.7 26.8 271 223-516 584-901 (1096)
383 KOG4441 Proteins containing BT 95.4 1.6 3.4E-05 49.4 20.6 184 322-516 287-502 (571)
384 COG3386 Gluconolactonase [Carb 95.4 4 8.7E-05 42.2 23.7 219 316-546 31-277 (307)
385 PF05096 Glu_cyclase_2: Glutam 95.2 3.8 8.2E-05 40.9 23.8 185 310-503 45-250 (264)
386 PF14727 PHTB1_N: PTHB1 N-term 95.2 5.6 0.00012 42.8 26.1 180 322-514 147-361 (418)
387 TIGR03118 PEPCTERM_chp_1 conse 95.2 3.6 7.7E-05 41.7 19.5 204 311-517 24-283 (336)
388 COG3204 Uncharacterized protei 95.1 4.1 8.9E-05 40.9 19.7 165 215-424 78-266 (316)
389 PF10647 Gmad1: Lipoprotein Lp 95.1 4 8.6E-05 41.0 20.4 158 351-515 25-199 (253)
390 KOG3630 Nuclear pore complex, 95.0 0.37 8E-06 56.0 13.7 137 311-451 102-254 (1405)
391 TIGR03074 PQQ_membr_DH membran 94.9 6.4 0.00014 46.0 23.9 200 320-520 194-484 (764)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 5.2 0.00011 44.9 22.0 195 320-518 69-338 (527)
393 KOG3630 Nuclear pore complex, 94.7 0.25 5.3E-06 57.4 11.2 150 393-542 102-261 (1405)
394 KOG2079 Vacuolar assembly/sort 94.6 0.6 1.3E-05 54.1 14.1 97 322-421 101-203 (1206)
395 PHA03098 kelch-like protein; P 94.6 1.5 3.2E-05 49.4 17.8 102 322-426 297-419 (534)
396 PF15390 DUF4613: Domain of un 94.6 2 4.3E-05 47.0 17.1 115 307-422 54-187 (671)
397 PF07995 GSDH: Glucose / Sorbo 94.5 7.4 0.00016 40.8 24.6 68 441-508 253-330 (331)
398 PF12894 Apc4_WD40: Anaphase-p 94.4 0.13 2.7E-06 36.7 5.4 31 222-252 11-41 (47)
399 PF12894 Apc4_WD40: Anaphase-p 94.3 0.15 3.3E-06 36.3 5.6 32 482-513 10-41 (47)
400 PF10647 Gmad1: Lipoprotein Lp 94.2 6.7 0.00015 39.3 21.7 150 311-462 25-186 (253)
401 PF15390 DUF4613: Domain of un 93.9 1.4 3E-05 48.2 14.3 153 305-469 15-184 (671)
402 PRK10115 protease 2; Provision 93.8 16 0.00036 42.4 31.3 195 313-516 175-397 (686)
403 KOG2079 Vacuolar assembly/sort 93.8 0.24 5.3E-06 57.2 8.9 69 308-379 129-202 (1206)
404 PHA02713 hypothetical protein; 93.6 4.9 0.00011 45.5 19.2 94 331-426 273-380 (557)
405 PF05694 SBP56: 56kDa selenium 93.5 1.8 4E-05 45.9 14.1 133 328-460 220-393 (461)
406 TIGR02604 Piru_Ver_Nterm putat 93.4 2.2 4.7E-05 45.5 15.2 99 310-410 72-202 (367)
407 COG5167 VID27 Protein involved 93.4 0.95 2.1E-05 48.4 11.7 148 361-514 478-633 (776)
408 PF12234 Rav1p_C: RAVE protein 93.1 3.3 7.2E-05 46.7 16.3 113 351-470 31-155 (631)
409 KOG2444 WD40 repeat protein [G 92.8 0.38 8.2E-06 46.2 7.2 58 322-380 116-177 (238)
410 PHA02790 Kelch-like protein; P 92.7 7 0.00015 43.4 18.4 103 322-426 274-389 (480)
411 KOG1897 Damage-specific DNA bi 92.5 26 0.00057 41.0 28.7 186 350-544 449-649 (1096)
412 PF14761 HPS3_N: Hermansky-Pud 92.4 7 0.00015 37.7 15.2 145 363-512 29-213 (215)
413 PF12234 Rav1p_C: RAVE protein 92.4 4 8.7E-05 46.0 15.8 111 394-513 32-156 (631)
414 PF08728 CRT10: CRT10; InterP 92.1 8.5 0.00018 44.0 17.8 109 311-420 102-245 (717)
415 PF14727 PHTB1_N: PTHB1 N-term 92.0 11 0.00024 40.6 18.0 148 361-514 36-205 (418)
416 KOG4499 Ca2+-binding protein R 92.0 10 0.00022 36.9 15.5 204 322-535 29-264 (310)
417 COG3490 Uncharacterized protei 91.7 7.6 0.00017 38.8 14.8 113 340-459 58-179 (366)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 22 0.00048 38.3 23.8 87 315-401 7-118 (415)
419 TIGR02604 Piru_Ver_Nterm putat 91.1 8.8 0.00019 40.9 16.4 148 350-502 14-202 (367)
420 KOG1916 Nuclear protein, conta 91.1 0.14 3E-06 57.9 2.6 116 304-421 127-265 (1283)
421 KOG2280 Vacuolar assembly/sort 90.7 6.1 0.00013 44.6 14.5 225 311-546 45-280 (829)
422 PF14781 BBS2_N: Ciliary BBSom 90.5 9.1 0.0002 33.9 12.7 105 316-422 5-126 (136)
423 PF10313 DUF2415: Uncharacteri 90.5 0.76 1.6E-05 31.9 4.8 31 223-253 1-34 (43)
424 COG5167 VID27 Protein involved 90.5 2.8 6.1E-05 44.9 11.2 137 322-470 482-631 (776)
425 PF10168 Nup88: Nuclear pore c 90.0 44 0.00095 38.9 23.9 70 310-380 85-179 (717)
426 PF10168 Nup88: Nuclear pore c 89.7 7 0.00015 45.3 14.8 82 391-472 84-180 (717)
427 PF03022 MRJP: Major royal jel 89.5 27 0.00059 35.7 22.8 166 331-501 35-253 (287)
428 TIGR03548 mutarot_permut cycli 89.3 25 0.00054 36.6 17.7 104 321-426 74-199 (323)
429 PF14870 PSII_BNR: Photosynthe 89.0 30 0.00065 35.6 30.3 215 312-542 64-293 (302)
430 PHA03098 kelch-like protein; P 88.9 16 0.00035 41.1 17.1 147 361-516 294-467 (534)
431 PF07569 Hira: TUP1-like enhan 88.5 2 4.4E-05 42.0 8.2 70 399-470 18-94 (219)
432 PLN02153 epithiospecifier prot 88.3 36 0.00079 35.7 20.2 102 322-426 35-172 (341)
433 KOG1898 Splicing factor 3b, su 88.1 36 0.00077 40.3 18.4 172 331-515 854-1050(1205)
434 PF07995 GSDH: Glucose / Sorbo 88.1 15 0.00034 38.4 15.1 110 393-504 3-134 (331)
435 KOG4460 Nuclear pore complex, 88.0 21 0.00047 38.7 15.5 87 393-479 105-206 (741)
436 smart00036 CNH Domain found in 87.4 38 0.00082 34.9 27.7 204 308-520 41-277 (302)
437 PRK13684 Ycf48-like protein; P 87.2 22 0.00047 37.4 15.6 107 309-419 214-329 (334)
438 PF14870 PSII_BNR: Photosynthe 86.7 41 0.00089 34.6 25.7 222 309-546 16-254 (302)
439 PF10313 DUF2415: Uncharacteri 86.3 2.3 4.9E-05 29.6 4.9 32 350-381 1-34 (43)
440 PLN02193 nitrile-specifier pro 86.0 56 0.0012 36.1 18.8 145 322-473 178-353 (470)
441 PRK10115 protease 2; Provision 86.0 76 0.0016 37.0 27.8 193 310-513 127-344 (686)
442 TIGR03606 non_repeat_PQQ dehyd 85.7 59 0.0013 35.5 18.2 55 348-403 28-90 (454)
443 KOG2377 Uncharacterized conser 85.7 16 0.00036 38.9 13.0 140 402-549 32-178 (657)
444 COG5290 IkappaB kinase complex 85.5 39 0.00084 38.7 16.4 112 393-511 248-364 (1243)
445 PHA02790 Kelch-like protein; P 85.3 58 0.0013 36.1 18.6 102 320-426 318-428 (480)
446 PF07569 Hira: TUP1-like enhan 85.2 6.2 0.00013 38.6 9.6 71 349-423 12-97 (219)
447 PRK13684 Ycf48-like protein; P 85.2 53 0.0011 34.5 17.7 151 309-470 172-330 (334)
448 COG3823 Glutamine cyclotransfe 85.0 37 0.00081 32.6 14.7 175 322-501 58-247 (262)
449 KOG2280 Vacuolar assembly/sort 84.9 41 0.00089 38.3 16.4 175 294-479 68-256 (829)
450 PF14761 HPS3_N: Hermansky-Pud 83.6 44 0.00096 32.3 15.9 109 315-425 23-167 (215)
451 COG5276 Uncharacterized conser 83.4 55 0.0012 33.2 23.6 165 342-520 79-248 (370)
452 PF13449 Phytase-like: Esteras 82.9 65 0.0014 33.6 17.6 147 350-500 20-231 (326)
453 PF02333 Phytase: Phytase; In 82.3 73 0.0016 33.9 19.2 149 361-514 67-238 (381)
454 PF14781 BBS2_N: Ciliary BBSom 82.0 34 0.00075 30.4 11.7 106 355-470 4-124 (136)
455 KOG4499 Ca2+-binding protein R 81.0 58 0.0013 31.9 19.4 174 322-501 73-272 (310)
456 PLN00033 photosystem II stabil 80.0 92 0.002 33.5 23.1 151 354-510 243-396 (398)
457 PF12657 TFIIIC_delta: Transcr 79.1 14 0.00031 34.5 9.3 30 310-339 86-122 (173)
458 PLN02153 epithiospecifier prot 78.9 89 0.0019 32.7 24.1 101 322-426 88-230 (341)
459 PF14655 RAB3GAP2_N: Rab3 GTPa 78.5 24 0.00052 38.0 11.7 48 208-255 293-340 (415)
460 PF10214 Rrn6: RNA polymerase 78.4 1.5E+02 0.0032 35.1 23.2 159 307-472 77-277 (765)
461 KOG3616 Selective LIM binding 78.1 46 0.001 37.8 13.6 80 339-421 4-83 (1636)
462 KOG1916 Nuclear protein, conta 77.5 0.33 7.3E-06 55.0 -2.6 29 225-253 186-214 (1283)
463 KOG1983 Tomosyn and related SN 77.4 23 0.0005 42.8 12.4 30 223-252 36-65 (993)
464 KOG2247 WD40 repeat-containing 77.0 0.35 7.6E-06 51.3 -2.5 142 313-464 38-181 (615)
465 PF10214 Rrn6: RNA polymerase 76.7 1.7E+02 0.0036 34.7 23.2 122 299-423 132-278 (765)
466 COG4590 ABC-type uncharacteriz 76.7 18 0.0004 38.5 9.7 102 322-425 282-390 (733)
467 PF02333 Phytase: Phytase; In 76.7 1.1E+02 0.0024 32.6 23.5 140 330-471 127-290 (381)
468 KOG1900 Nuclear pore complex, 75.7 37 0.0008 41.2 12.9 158 353-514 82-273 (1311)
469 KOG3616 Selective LIM binding 74.0 89 0.0019 35.6 14.4 32 222-253 14-45 (1636)
470 KOG2377 Uncharacterized conser 73.4 65 0.0014 34.6 12.7 101 307-410 64-172 (657)
471 TIGR03074 PQQ_membr_DH membran 73.4 2E+02 0.0043 34.0 22.8 156 321-476 261-482 (764)
472 PF08728 CRT10: CRT10; InterP 73.2 35 0.00077 39.2 11.7 106 361-470 113-245 (717)
473 PF11635 Med16: Mediator compl 72.4 2.1E+02 0.0045 33.8 20.3 67 441-508 260-345 (753)
474 TIGR03606 non_repeat_PQQ dehyd 70.6 1.2E+02 0.0026 33.3 14.6 113 391-504 29-166 (454)
475 TIGR03547 muta_rot_YjhT mutatr 69.9 1.5E+02 0.0032 31.1 22.5 41 372-412 168-210 (346)
476 KOG2247 WD40 repeat-containing 69.4 0.7 1.5E-05 49.2 -2.5 132 227-408 39-176 (615)
477 PF12768 Rax2: Cortical protei 68.7 1.1E+02 0.0024 31.2 13.1 94 330-424 16-124 (281)
478 PF12657 TFIIIC_delta: Transcr 67.9 24 0.00052 33.0 7.8 31 393-423 87-123 (173)
479 COG5290 IkappaB kinase complex 67.4 77 0.0017 36.5 12.3 99 353-461 250-357 (1243)
480 PLN02193 nitrile-specifier pro 66.6 2.1E+02 0.0045 31.6 19.5 101 322-426 231-356 (470)
481 KOG1900 Nuclear pore complex, 66.2 38 0.00083 41.0 10.3 143 326-471 95-272 (1311)
482 PF07676 PD40: WD40-like Beta 65.5 21 0.00045 23.8 5.1 30 220-249 6-38 (39)
483 PF12768 Rax2: Cortical protei 64.7 1.5E+02 0.0033 30.2 13.2 97 372-472 16-124 (281)
484 KOG1896 mRNA cleavage and poly 64.5 1.5E+02 0.0033 35.9 14.5 146 235-418 1047-1210(1366)
485 PRK14131 N-acetylneuraminic ac 63.9 2E+02 0.0044 30.5 22.6 38 373-411 190-230 (376)
486 PF11715 Nup160: Nucleoporin N 62.6 47 0.001 37.5 10.3 28 320-347 230-257 (547)
487 COG1520 FOG: WD40-like repeat 62.5 2.1E+02 0.0046 30.2 20.3 193 320-522 68-277 (370)
488 PF05935 Arylsulfotrans: Aryls 62.5 2.5E+02 0.0054 31.1 19.6 117 355-476 153-306 (477)
489 KOG4460 Nuclear pore complex, 62.3 67 0.0015 35.1 10.3 26 224-249 105-130 (741)
490 TIGR02276 beta_rpt_yvtn 40-res 60.8 35 0.00075 22.8 5.7 36 322-357 6-41 (42)
491 PRK13613 lipoprotein LpqB; Pro 60.3 1.5E+02 0.0033 33.8 13.5 154 351-513 364-537 (599)
492 PF07250 Glyoxal_oxid_N: Glyox 60.1 84 0.0018 31.2 10.2 139 374-516 48-200 (243)
493 PF11715 Nup160: Nucleoporin N 59.9 44 0.00095 37.7 9.5 75 401-475 156-252 (547)
494 COG4590 ABC-type uncharacteriz 59.5 20 0.00043 38.2 5.8 148 390-542 219-375 (733)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 58.9 60 0.0013 38.2 10.0 82 371-458 328-416 (912)
496 COG3823 Glutamine cyclotransfe 58.4 1.8E+02 0.0039 28.1 13.5 51 328-381 109-159 (262)
497 PF01731 Arylesterase: Arylest 56.8 47 0.001 27.1 6.5 49 463-514 36-85 (86)
498 TIGR03548 mutarot_permut cycli 56.2 2.5E+02 0.0054 29.0 20.0 104 361-472 72-195 (323)
499 TIGR03118 PEPCTERM_chp_1 conse 55.8 2.5E+02 0.0054 28.9 21.0 145 322-472 102-280 (336)
500 PF07676 PD40: WD40-like Beta 54.9 43 0.00094 22.2 5.2 28 441-468 9-38 (39)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-76 Score=632.79 Aligned_cols=625 Identities=39% Similarity=0.671 Sum_probs=454.6
Q ss_pred CCCcccceeeccccccccccccccccCCCCCccccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCcccCCC--------
Q 005956 5 DEGVDDVFFDSTDCLSFEESVVAEEELGPGKLDYDIWMSEPRSVKERRKNFLCKMGLVEFSSK-NEITFDDS-------- 75 (667)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------- 75 (667)
.|||||.|||+.|+++. .|++|+..|.||.|||++||++|||+..... +.++....
T Consensus 5 ~~ee~~~f~~~~~~~~~---------------~~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~~~ 69 (712)
T KOG0283|consen 5 GEEEEDRFFDASERVSP---------------DYDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVESN 69 (712)
T ss_pred cccccccccccccccCc---------------chhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccccc
Confidence 34556999999999962 1999999999999999999999999955322 22211111
Q ss_pred ---ccccCcccccc--cCcccccCCCCCCCCCccccccccCCCceeEeec---------cccccCCceEEeecccc-ccc
Q 005956 76 ---SQMMGLDRITE--CSGAVSGSSMNRADENLNCFDREMDSEANCMVDE---------LEQDQMNECVVTLEGES-NGF 140 (667)
Q Consensus 76 ---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~ 140 (667)
+.+..++.... +..+. ..+...-..-..+ -..+.|.++++.+ +.+.|.+...+.++++. .|.
T Consensus 70 ~~~~~~~~v~~~~~~~~~~~~-~~s~~~~~~~~~~--~~~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~ 146 (712)
T KOG0283|consen 70 VDESNHNSVEDTDSEQCRPSS-SSSKSRVSQSSSS--IELDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGE 146 (712)
T ss_pred ccccccccccccccccCCccc-ccccccccccccc--eeecccceeeEeeccCccccccccCCCcccccccccccCCcCc
Confidence 01100111000 00000 0000000011112 1158889999977 55677788899999998 788
Q ss_pred chhhhhhcCCCCCC------------CCc-----chhhhHhHHHHHHhhhcccch-------h--hcccc----------
Q 005956 141 SQSVDKFENPFPEC------------KGV-----NIKKVKKLWKRIISMKKRNVE-------T--CMSEK---------- 184 (667)
Q Consensus 141 ~~~~~~l~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~---------- 184 (667)
++.+.+|++..... ... ..++.+.|++++..+...... . .....
T Consensus 147 ~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~ 226 (712)
T KOG0283|consen 147 SSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPK 226 (712)
T ss_pred ccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchhcccccccccc
Confidence 88888887722111 111 113344577776655221000 0 00000
Q ss_pred CCC--CCCCCCcchhHHhhcccccccccccccceeec-cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 005956 185 RKP--NSEKPKANKMEVKQNKKKCMEFTALYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF 261 (667)
Q Consensus 185 ~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~-~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~ 261 (667)
... ......++++++++++|..+++..+++.|+++ +|.++||+|+||+||+|||+||+||.|+||.+...+......
T Consensus 227 ~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~ 306 (712)
T KOG0283|consen 227 SSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAE 306 (712)
T ss_pred cccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccc
Confidence 000 11113348899999999999999999999999 999999999999999999999999999999998633222211
Q ss_pred CC----------CCCc---cc--cCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEE
Q 005956 262 TD----------DGGF---GS--NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSC 326 (667)
Q Consensus 262 ~~----------~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~ 326 (667)
.. .+.. .. ....+......+.....++.++..++.+..+|++.|.||.+.|++|.|+.+++|+++
T Consensus 307 ~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS 386 (712)
T KOG0283|consen 307 GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS 386 (712)
T ss_pred cccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEec
Confidence 11 1100 00 111223334444455556888999999999999999999999999999999999999
Q ss_pred eCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956 327 SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 406 (667)
Q Consensus 327 s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l 406 (667)
++|+|||||++...+|+++|.|.+.|+|++|+|.|++||++|+.||+||||++...+++.|.+.++.|+++||.|||++.
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC--CcceeeEEeCCCC
Q 005956 407 IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG--VDVIHKFKGLPKS 483 (667)
Q Consensus 407 ~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~--~~~~~~~~~~~~~ 483 (667)
++|+.+|.|++|+..+.++... .+..+..++....+||+++|.|.....+++++.|..|||||+ .+++++|++..+.
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 9999999999999999998877 788877777766699999999987778999999999999999 6899999999888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc-cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcC
Q 005956 484 GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCS 562 (667)
Q Consensus 484 ~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~ 562 (667)
.....+.|+.||+||+++++|..||||+++...... ........+.+.|+......|+.|.+...... +.. .
T Consensus 547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~---ss~----~ 619 (712)
T KOG0283|consen 547 SSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNP---SSN----L 619 (712)
T ss_pred CcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccccc---ccc----C
Confidence 999999999999999999999999999997654322 23344566778999999999999998765321 000 0
Q ss_pred ccCcCCC-CCCcccCCCcccCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCC
Q 005956 563 QKWDNLE-TAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISAT 641 (667)
Q Consensus 563 ~~w~~~~-~~~~~~~~~~fS~~~~~~~~g~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (667)
+..+ .++........++...++. .+++++||++++..... .......+++++.+.|+.... ..+++
T Consensus 620 ---p~~~~~~~~~~~~~~~s~~~~~~~---~~~s~t~~e~~~~~s~~----~~~~~~~~~~~~~S~~~~~~~---~~~~~ 686 (712)
T KOG0283|consen 620 ---PPLIKAALRPVNEFKLSSPMRSLN---SRGSATWPEEKLLDSPG----ASASSRSSIKFLMSGCQRSSS---SSPHA 686 (712)
T ss_pred ---CCCcccccCcccccccCCcccccc---ccccccCcccccccccC----cccccccccccccCCCccccc---cccCC
Confidence 1111 0000000011111222222 48999999999876522 122233344777777765222 23689
Q ss_pred CceEEEecCCCCeEeeeeecCCcccC
Q 005956 642 WGLVIVTAGCDGMIKTFHNYGLPIRL 667 (667)
Q Consensus 642 ~g~vivta~~~G~ir~f~~~~~~~~~ 667 (667)
||||||||+|+|+||+|||||||+++
T Consensus 687 wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 687 WGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred CcceeeeccccceEEEEEecCCCCCC
Confidence 99999999999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=309.56 Aligned_cols=319 Identities=22% Similarity=0.302 Sum_probs=253.7
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------------------------------------- 146 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------------------------------------- 146 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------------------------------
Confidence 445667889999999999999999999999999999999986
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-e-eCCCcEEEEEEeeC----CCCE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPI----DDNY 364 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~-~h~~~V~~l~f~p~----d~~~ 364 (667)
+.|..+.++|..-|.|++|+||| .|++|+.||+|++||..+++++.. + +|...|++++|.|. ..++
T Consensus 147 -------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~ 219 (480)
T KOG0271|consen 147 -------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRR 219 (480)
T ss_pred -------CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccc
Confidence 57789999999999999999999 999999999999999999877643 3 59999999999872 4678
Q ss_pred EEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
|++++.||.|+|||+..++++. ..+|...|+|++|--+| +|++|+.|++|++|+...+.+... .+.|...|
T Consensus 220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~-------lkGHahwv 291 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRE-------LKGHAHWV 291 (480)
T ss_pred eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHh-------hcccchhe
Confidence 9999999999999999988765 78899999999997665 899999999999999988665432 33445677
Q ss_pred EEEEEc-----------cCC------------------------CeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCC
Q 005956 444 TGIQFS-----------RDE------------------------SQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGS 485 (667)
Q Consensus 444 ~~l~~s-----------p~g------------------------~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~ 485 (667)
+.++.+ |.+ +..+++++.|.++.+|+... ++.+..+ |..-
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg--Hq~l 369 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG--HQAL 369 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc--hhhh
Confidence 777766 222 24699999999999999663 3334444 8999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCcc
Q 005956 486 QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQK 564 (667)
Q Consensus 486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~ 564 (667)
|+.+.||||++|||++|-|..|++|+-.+++...... +-..+-.++|+.|.+.|+.+..+.. ++++....-..
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT--LKvw~V~tkKl---- 443 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST--LKVWDVRTKKL---- 443 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce--EEEEEeeeeee----
Confidence 9999999999999999999999999999998866543 2333344589998888777665543 33322211100
Q ss_pred CcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956 565 WDNLETAPWIRDSERFSLGSWFSNDGP 591 (667)
Q Consensus 565 w~~~~~~~~~~~~~~fS~~~~~~~~g~ 591 (667)
-..+|.+-..+...+.||++.-.+.|.
T Consensus 444 ~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred cccCCCCCceEEEEEecCCCceeecCC
Confidence 023454555566677888887776554
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=311.91 Aligned_cols=271 Identities=19% Similarity=0.276 Sum_probs=241.2
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+-+.+|..+.||+|++.||||+.+|.++||++.+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~---------------------------------------------~ 207 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ---------------------------------------------C 207 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC---------------------------------------------c
Confidence 7789999999999999999999999999999986 2
Q ss_pred CcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
..+++|.||+..|.++.|+|. + .++||+.||++++|++.+..++..+. |...|..++|+| +|++|.+++.|.+-+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWR 286 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchh
Confidence 457899999999999999997 4 89999999999999999988888774 889999999999 999999999999999
Q ss_pred EEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 376 IWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 376 iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
+||++++..+ ...+|...|.+++|+|||..+++|+.|..-+|||++++..... +.+ |..+|.++.|+|+| +
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~---L~g----H~k~I~~V~fsPNG-y 358 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF---LAG----HIKEILSVAFSPNG-Y 358 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE---ecc----cccceeeEeECCCc-e
Confidence 9999998754 5778999999999999999999999999999999999887653 222 45899999999996 9
Q ss_pred EEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEE
Q 005956 455 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHF 532 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~f 532 (667)
.|++|+.|++++|||++.....+....|..-|+.+.|+| .|.+|+|++.|++++||.-.+..+.... .+...+-++..
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence 999999999999999997777888888999999999998 7899999999999999999998765442 34444555699
Q ss_pred ccCCcEEEEecC
Q 005956 533 FSEGVSVAVQWP 544 (667)
Q Consensus 533 s~dg~~lav~w~ 544 (667)
++||..++.+.-
T Consensus 439 s~d~~~i~t~s~ 450 (459)
T KOG0272|consen 439 SPDSQAIATSSF 450 (459)
T ss_pred ccCCceEEEecc
Confidence 999998887543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.9e-38 Score=309.11 Aligned_cols=251 Identities=22% Similarity=0.376 Sum_probs=225.1
Q ss_pred cccccccceeeccccccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
..+.....++|.+|++.|.++.|+|. +.-||||+.||++++|++.+
T Consensus 203 ~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-------------------------------- 250 (459)
T KOG0272|consen 203 SVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-------------------------------- 250 (459)
T ss_pred ecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------------------------------
Confidence 34556778899999999999999997 66999999999999999985
Q ss_pred ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCC
Q 005956 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~ 363 (667)
..++..+.||...|..++|+|+| +|+|++.|.+-++||+.++..+... +|...|.+++|+| ||.
T Consensus 251 -------------e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGS 316 (459)
T KOG0272|consen 251 -------------ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGS 316 (459)
T ss_pred -------------CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCc
Confidence 46789999999999999999999 9999999999999999998766555 5999999999999 999
Q ss_pred EEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
++++|+.|..-+|||+++++.+ .+.+|...|.+|+|+|+|..+|+|+.|++++|||++...... . ...|.+-
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly-~------ipAH~nl 389 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY-T------IPAHSNL 389 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce-e------cccccch
Confidence 9999999999999999999866 477899999999999999999999999999999999776632 2 3344588
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
|+.+.|+|+.+.+|++++.|++++||........-...+|.+.|.++++++|+.+|+|++.|.++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999997779999999999999999886555445555999999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=281.23 Aligned_cols=284 Identities=20% Similarity=0.344 Sum_probs=237.9
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCccc-cCCCCeEEecc
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGFGS-NAKEGKIKFGK 280 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (667)
...++|++|.+.|.+|.|++|.++|++++.||.+.|||.-+.. +....|.|.+.+++ +.-+.+..++.
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3447899999999999999999999999999999999987643 23456777776544 33444444443
Q ss_pred cCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956 281 KKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP 359 (667)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 359 (667)
....... .......++.+|++.+.++.|-+|+.|+|++.|.+..+||+++++.+..|. |...|.++.+.|
T Consensus 126 ls~~d~~---------g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 126 LSTRDAE---------GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ccccccc---------ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 3321110 011335678999999999999999999999999999999999999999995 999999999999
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
.+++.|++|+-|++.++||++.+..++ +.+|...|++++|.|+|.-|++|+.|+++++||++..+.... +. ...
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys----~~~ 271 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YS----HDS 271 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-ec----cCc
Confidence 999999999999999999999998775 788999999999999999999999999999999997655432 11 222
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
...+|++++|+..| ++|++|..|..+.+||.-+....-...+|...|.++..+|||.-|++||.|..++||.
T Consensus 272 ~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34789999999996 8999999999999999876665555566999999999999999999999999999994
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-36 Score=291.37 Aligned_cols=278 Identities=21% Similarity=0.351 Sum_probs=231.6
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
....+.++|..-|.|++|+|||+.||+|+.||.|++||..++.
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------------------------------- 190 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------------------------------- 190 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------------------------------
Confidence 3456788999999999999999999999999999999988742
Q ss_pred CcccccCCcceeeeccccceEEEEecC-----CC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSN-----SN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~-----~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l 365 (667)
.....|.||...|++|+|.| .. +|++++.||+|+|||+..+.++..+ +|+.+|+|+.|- ...+|
T Consensus 191 -------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gli 261 (480)
T KOG0271|consen 191 -------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLI 261 (480)
T ss_pred -------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceE
Confidence 34567889999999999976 23 8999999999999999999998887 599999999997 36799
Q ss_pred EEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEe-----------eCCC-------------------------EEEE
Q 005956 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----------PDGK-------------------------GFIV 408 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~s-----------pdg~-------------------------~l~~ 408 (667)
++|+.|++|++|+...|.+.. +.+|...|+.++.+ |.++ .+++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999999999999988765 77888888888766 3344 4999
Q ss_pred EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEE
Q 005956 409 GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS 488 (667)
Q Consensus 409 gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 488 (667)
|+.|.++.+|+-...+..... ...|..-|+.+.|+||+ .+|++++.|..|++||..+........+|-..|..
T Consensus 342 gsDd~tlflW~p~~~kkpi~r------mtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITR------MTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ 414 (480)
T ss_pred ecCCceEEEecccccccchhh------hhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence 999999999997765544332 23345789999999996 99999999999999998865443333348999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEec
Q 005956 489 ASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 489 v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w 543 (667)
++|+.|.++|++||.|.+++||++.+.+...-. .....+.++.|+|||+.+|..-
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 999999999999999999999999988765433 3445556668888888776543
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-33 Score=266.84 Aligned_cols=283 Identities=17% Similarity=0.267 Sum_probs=236.5
Q ss_pred cceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.-+|++|++.|+.++..+. ...|++++.|.++.+|++...+..
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------------------- 51 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------------------- 51 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-----------------------------------
Confidence 44578899999999999987 458999999999999999862110
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
-+.+++.|.||...|..+..++++ +.++++.|+++++||+.+++..+.| +|...|.+++|+| |...+++|+.
T Consensus 52 -----~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSr 125 (315)
T KOG0279|consen 52 -----YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSR 125 (315)
T ss_pred -----cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCC
Confidence 256788999999999999999999 9999999999999999999888887 5999999999999 9999999999
Q ss_pred CCeEEEEecCCCeEEEeccc--CCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 371 DGKVRIWGVCEKRVVDWADV--RDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~~~~--~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|.+|++|++.+......... .+.|+|++|+|+ ..+|+.++.|+++++||+++.++... ...|.+.++.+
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~-------~~gh~~~v~t~ 198 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT-------FIGHSGYVNTV 198 (315)
T ss_pred cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc-------cccccccEEEE
Confidence 99999999998887765554 789999999997 67899999999999999998776543 33456899999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK--- 523 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--- 523 (667)
+++||| .+.++|+.||.+.+||++...+.+.. .+...|.+++|+|+.-.|+.+. +..|+|||+++.........
T Consensus 199 ~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~ 275 (315)
T KOG0279|consen 199 TVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI 275 (315)
T ss_pred EECCCC-CEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc
Confidence 999997 89999999999999999987775554 4889999999999876666554 55699999998866433221
Q ss_pred -------cCccceeEEccCCcEEEEecCCCC
Q 005956 524 -------NSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 524 -------~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
...-..++|++||+.|-..+....
T Consensus 276 g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 122234788888888888777654
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=259.85 Aligned_cols=269 Identities=19% Similarity=0.333 Sum_probs=227.6
Q ss_pred CEEEEEECCCcEEEEEcCCCceee-----------eeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 235 RYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 235 ~~Latgs~Dg~I~vWdv~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
-+|+|+|.|-+||+|...++.+.. +..+++...++......+++++..++. ..|+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n-------------p~Pv~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNN-------------PNPVA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCC-------------CCcee
Confidence 489999999999999988875543 445566666667777777777765543 35899
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
++.+|+..|+++.|..+| .+++|+.||+++|||++...+.+.+.|..+|+++..+| +...|++|..+|.|++||+...
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999 99999999999999999999999999999999999999 8889999999999999999987
Q ss_pred eEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 383 RVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 383 ~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
.... .......|.++...|||..++.+...|++++|++-+........ ...+...|.+.|..+.++|++ ++|++++
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~-P~~k~~ah~~~il~C~lSPd~-k~lat~s 234 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE-PVHKFQAHNGHILRCLLSPDV-KYLATCS 234 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce-EhhheecccceEEEEEECCCC-cEEEeec
Confidence 6543 33445679999999999999999999999999998755433333 333466788999999999995 9999999
Q ss_pred CCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 461 EDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 461 ~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.|.+++||+..+. ........|...+..++||.||.||++|+.|+.+++|++..++...
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 9999999998865 3344445588899999999999999999999999999999988543
No 9
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=281.27 Aligned_cols=355 Identities=20% Similarity=0.350 Sum_probs=280.5
Q ss_pred cccchhhhhhcCCCCCCCCcchhhhHhHHHHHHhhhcccchhhccccCCCCCCCCCcchhHHhhccccccccccccccee
Q 005956 138 NGFSQSVDKFENPFPECKGVNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPKANKMEVKQNKKKCMEFTALYTSQE 217 (667)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 217 (667)
+....++.+|+..++++.++|++|++-++++.+..|....--.+.. ..+...+..+....-.+.+..|.
T Consensus 151 n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsl-----------dsvsll~Dh~c~~~qip~qt~qi 219 (519)
T KOG0293|consen 151 NERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSL-----------DSVSLLSDHFCGRLQIPSQTWQI 219 (519)
T ss_pred hhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhccc-----------chhhhhhhcccCcccCCchhhhh
Confidence 4446678999999999999999999999999988876432111110 11222223232223345667889
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
|+.|++.||-+.||++|+|||||+.|.+..||++....
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------------ 257 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV------------------------------------------ 257 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc------------------------------------------
Confidence 99999999999999999999999999999999987411
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.-+..+++.||..+|..+.||||. +|++|+.|..+.+||+.+|.+...+.+. ..+.+++|.| |+..|++|+.|+++
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTI 336 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcE
Confidence 124478899999999999999999 9999999999999999999999999755 7899999999 99999999999999
Q ss_pred EEEecCCCeEEEecccC-CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 375 RIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~-~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
..||+.......|.+.+ ..|.+++.++||+++++.+.|..|++|+..+..... ......+|++++.+.++
T Consensus 337 ~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--------lise~~~its~~iS~d~- 407 (519)
T KOG0293|consen 337 IMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--------LISEEQPITSFSISKDG- 407 (519)
T ss_pred EEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc--------cccccCceeEEEEcCCC-
Confidence 99999988877776655 448999999999999999999999999987643321 11123789999999996
Q ss_pred eEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956 454 QRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC 529 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~ 529 (667)
+++++.=.+..|++||+. ..+++|.++.....+..-||.- +.++|++||+|+.||||+..+++...... +...+.
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN- 486 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN- 486 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee-
Confidence 888888899999999987 4567788877777888888854 45899999999999999999998755432 223333
Q ss_pred eEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC
Q 005956 530 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL 568 (667)
Q Consensus 530 ~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~ 568 (667)
+++|++..+. .+++.+.+++.++|...
T Consensus 487 ----------cVswNP~~p~--m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 487 ----------CVSWNPADPE--MFASASDDGTIRIWGPS 513 (519)
T ss_pred ----------EEecCCCCHH--HhhccCCCCeEEEecCC
Confidence 4556655433 46666777778888653
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-34 Score=278.98 Aligned_cols=364 Identities=19% Similarity=0.302 Sum_probs=284.3
Q ss_pred cccccCCceEEeecccc--cccchhhhhhcC-CCCCCCCc--chhhhHhHHHHHHhhhccc--chhhccccCCCCCCCCC
Q 005956 121 LEQDQMNECVVTLEGES--NGFSQSVDKFEN-PFPECKGV--NIKKVKKLWKRIISMKKRN--VETCMSEKRKPNSEKPK 193 (667)
Q Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 193 (667)
+.++|.++....+-.+. +|++.+-+.+.+ ....+.+. +...+++.|..+.+++|+- ++...++..+.......
T Consensus 5 ~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g~p 84 (406)
T KOG0295|consen 5 LSERQRDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAGDP 84 (406)
T ss_pred ecccchHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhcccccccccCCC
Confidence 34556666555555554 555444444433 22333333 4467788999999888753 33333333322111111
Q ss_pred cchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCC
Q 005956 194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273 (667)
Q Consensus 194 ~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 273 (667)
....+....+.+++.+.+.+.+|..+|+.+-|+|+-..++++++|++|++||..++
T Consensus 85 -----t~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg------------------- 140 (406)
T KOG0295|consen 85 -----TGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG------------------- 140 (406)
T ss_pred -----CcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch-------------------
Confidence 11223344477788888999999999999999999999999999999999999873
Q ss_pred CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-CeEeEEe-eCCC
Q 005956 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVF-DHHN 350 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~-~h~~ 350 (667)
.....++||+..|.++.|+..| +|++++.|-.+++||.++ .+|++.. +|..
T Consensus 141 --------------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 141 --------------------------ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred --------------------------hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 3467889999999999999999 999999999999999987 4555544 5999
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~ 429 (667)
.|.++.|-| .++++++++.|.+|+.|++.++-.+. +.+|...|..+..+.||..+++++.|.++++|-+.+.+....
T Consensus 195 ~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~- 272 (406)
T KOG0295|consen 195 GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE- 272 (406)
T ss_pred ceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-
Confidence 999999999 88999999999999999999998775 778889999999999999999999999999999998755432
Q ss_pred EeeccccCcCCCCeEEEEEccC--------------CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956 430 VDFHDRKKTSGNKITGIQFSRD--------------ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~--------------g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
...|..+|.+++|.|. +..++.+++.|++|++||+..+.+.+...+|...|..++|+|.|
T Consensus 273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence 2334577888888664 23699999999999999999988888888899999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEe
Q 005956 496 KHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~ 542 (667)
+||+++.+|++++|||+++..+.... .......++.|+.+--++..+
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence 99999999999999999998876553 345566777888766655543
No 11
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=266.18 Aligned_cols=278 Identities=24% Similarity=0.401 Sum_probs=239.1
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+.+|++.|+.++|+|+|.+|||||.|..|.+|++..
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------------------------------------- 78 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------------------------------------- 78 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-------------------------------------------
Confidence 4679999999999999999999999999999999874
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
..+....+++|.+.|..+.|.+++ .+++++.|++|+.||+++|++++.++ |..-|..+.-...+..++.+++.|+++
T Consensus 79 -dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 79 -DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred -cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 234466778999999999999999 99999999999999999999999986 888888888655566788999999999
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
++||+++...++....+..+++++|...+..+.+|+-|+.|++||++.+..... ...|..+|+.+..+|+| .
T Consensus 158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------lsGh~DtIt~lsls~~g-s 229 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------LSGHADTITGLSLSRYG-S 229 (338)
T ss_pred EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE-------eecccCceeeEEeccCC-C
Confidence 999999999998888889999999999999999999999999999988776432 33446899999999996 8
Q ss_pred EEEEEeCCCcEEEEECC------cceeeEEeCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-ccccccC
Q 005956 455 RIMITSEDSKLRILDGV------DVIHKFKGLPKS--GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-SSKQKNS 525 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~------~~~~~~~~~~~~--~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~ 525 (667)
++++-+.|.++++||.+ .++..+.++.|. .....++|+|++.++.+|+.|..+++||....... .......
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce
Confidence 99999999999999976 346777776554 34567899999999999999999999999885543 3345556
Q ss_pred ccceeEEccCCcEEEEecCCC
Q 005956 526 VRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 526 ~~~~~~fs~dg~~lav~w~~~ 546 (667)
.+.++.|+|...++..+.++.
T Consensus 310 svn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred eEEEeeecCCCcEEEEeccCc
Confidence 777889999888887765544
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-32 Score=259.61 Aligned_cols=246 Identities=20% Similarity=0.385 Sum_probs=206.7
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.++||+..|..+..++||++.++++.|+++++||+.+
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--------------------------------------- 94 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--------------------------------------- 94 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecC---------------------------------------
Confidence 34567889999999999999999999999999999999996
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC-CCEEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID-DNYFISG 368 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d-~~~l~sg 368 (667)
+++.+.|.||...|.+++|++|+ .+++|+.|++|++|++.......... +.+.|.|+.|+|+. ..+|+++
T Consensus 95 ------g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 95 ------GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred ------CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 35578899999999999999999 99999999999999998655444444 37899999999943 7799999
Q ss_pred ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
+.|++|++||+++.++.. +.+|.+.++.++++|||...+.|+.||.+.+||++..+... ...+...|.+++
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly--------sl~a~~~v~sl~ 240 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY--------SLEAFDIVNSLC 240 (315)
T ss_pred cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--------eccCCCeEeeEE
Confidence 999999999999988775 77899999999999999999999999999999999877632 222347899999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCccee------eEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIH------KFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~------~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
|+|+ .+.++...+..|+|||+..... .+.+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 241 fspn--rywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 241 FSPN--RYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ecCC--ceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9998 4666666667799999763221 11121 113345788999999999999999999999874
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-32 Score=290.23 Aligned_cols=283 Identities=24% Similarity=0.348 Sum_probs=223.8
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
+..++......+ ..++|..|++|+..||.|-.|..|++|.+.......+. +...+ ...++......
T Consensus 367 pSic~YT~~nt~-~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk---~~~~l--------~~~d~~sad~~-- 432 (707)
T KOG0263|consen 367 PSICMYTFHNTY-QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK---DASDL--------SNIDTESADVD-- 432 (707)
T ss_pred CcEEEEEEEEcC-CcceeEeecCCcchhhccccccEEEEEecchhhhcccc---chhhh--------ccccccccchh--
Confidence 444444444444 45999999999999999999999999999842211110 00000 00000000000
Q ss_pred cCCCccc-ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEE
Q 005956 290 IPDEVFQ-IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 290 ~~~~~~~-~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~ 366 (667)
....+ .......++.||.++|..+.|+|+. +|++|+.|++||+|.+.+..++..+. |..+|++++|+| .|-||+
T Consensus 433 --~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFa 509 (707)
T KOG0263|consen 433 --VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFA 509 (707)
T ss_pred --hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEE
Confidence 00111 1223456689999999999999999 99999999999999999999998885 999999999999 899999
Q ss_pred EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
+++.|++.++|........+ +.+|-..|.|+.|+|+..++++|+.|.++++||+.++..... + ..|.++|++
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi---F----~GH~~~V~a 582 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI---F----TGHKGPVTA 582 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE---e----cCCCCceEE
Confidence 99999999999998877765 677889999999999999999999999999999998876432 2 335699999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
++|+|+| .+|++|+.|+.|.|||+...........|.+.|.++.||.+|..||+||.|.+|++||+.....
T Consensus 583 l~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 583 LAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 9999996 9999999999999999886444444444799999999999999999999999999999876543
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=280.31 Aligned_cols=278 Identities=22% Similarity=0.424 Sum_probs=235.7
Q ss_pred cccccccceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (667)
.+.+-.+..++.+|+..|+++.|.| .+.+|++|+.|+.|+||++..
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------------- 246 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------------- 246 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------------
Confidence 3445566788999999999999999 899999999999999999975
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l 365 (667)
..+.+++|.||..+|.+++|+++| .+++++.|++|++||+++|+++..|.....++|+.|+|.+.+.|
T Consensus 247 -----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~f 315 (503)
T KOG0282|consen 247 -----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIF 315 (503)
T ss_pred -----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEE
Confidence 356789999999999999999999 99999999999999999999999999999999999999555999
Q ss_pred EEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 366 ISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
++|+.|+.|+.||++++++++ +..|-+.|..+.|-++|+.+++.+.|++++||+.+..-......... .....
T Consensus 316 l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~------~hsmP 389 (503)
T KOG0282|consen 316 LVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE------MHTMP 389 (503)
T ss_pred EEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh------hccCc
Confidence 999999999999999999886 56677899999999999999999999999999998655433222211 24567
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECC-----cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGV-----DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
++..+|++ .++++-+.|+.|.++.+. +...+|+++.-.+.-..+.|||||.+|++|+.||.+++||.++.+...
T Consensus 390 ~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 390 CLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred ceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh
Confidence 89999996 899999999999999865 345677887777888899999999999999999999999999877644
Q ss_pred cccc-cCccceeEEccCC
Q 005956 520 SKQK-NSVRSCEHFFSEG 536 (667)
Q Consensus 520 ~~~~-~~~~~~~~fs~dg 536 (667)
.... ......+.|+|..
T Consensus 469 ~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred ccccCCcceEEEEecCCC
Confidence 4322 2333334566543
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-31 Score=267.44 Aligned_cols=270 Identities=21% Similarity=0.310 Sum_probs=234.5
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
+..|++++|+.+|.+||||+.||.++||+... ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----------------------------------------------~l 268 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----------------------------------------------NL 268 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----------------------------------------------hh
Confidence 35799999999999999999999999999873 45
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
+.+|..|.++|.+|.|+..| +|++++.|+++.+||..++...+.|. |..+-..+.|- +...|++++.|+.|+++-+
T Consensus 269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEe
Confidence 77888999999999999999 99999999999999999999999997 66665788997 4778999999999999999
Q ss_pred CCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-----
Q 005956 380 CEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----- 453 (667)
Q Consensus 380 ~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~----- 453 (667)
....++ .+.+|++.|.++.|+|.|..|++++.|++++||......... ....|...|..+.|+|.|+
T Consensus 347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~-------~l~~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH-------DLQAHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-------hhhhhccceeeEeecCCCCccCCC
Confidence 887765 577899999999999999999999999999999976544321 1334457899999998753
Q ss_pred ---eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcccee
Q 005956 454 ---QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 530 (667)
Q Consensus 454 ---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 530 (667)
..+++++.|++|++||+...++......|..+|.+++|+|+|+|+|+|+.||.|.||+.++++..........+..+
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel 499 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL 499 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence 57999999999999999988777777779999999999999999999999999999999999876666666666778
Q ss_pred EEccCCcEEEEecCCC
Q 005956 531 HFFSEGVSVAVQWPGI 546 (667)
Q Consensus 531 ~fs~dg~~lav~w~~~ 546 (667)
+|+.+|..|+++.+..
T Consensus 500 ~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDG 515 (524)
T ss_pred EEcCCCCEEEEEecCC
Confidence 8998888888876654
No 16
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-31 Score=243.30 Aligned_cols=270 Identities=25% Similarity=0.446 Sum_probs=229.8
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.|..|+++|.++.|+-||+|.+|+|.|++|++|+...
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r----------------------------------------- 48 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR----------------------------------------- 48 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccc-----------------------------------------
Confidence 456789999999999999999999999999999999875
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
+..++++.||...|.+++.+.|+ .|++|+.|+.|.+||+.+|+.++.+. |...|..++|+. +...+++|+.|.
T Consensus 49 ----g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~ 123 (307)
T KOG0316|consen 49 ----GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDS 123 (307)
T ss_pred ----cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccc
Confidence 45689999999999999999888 99999999999999999999999996 999999999999 899999999999
Q ss_pred eEEEEecCCCe--EEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 373 KVRIWGVCEKR--VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 373 ~v~iwdl~~~~--~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
++++||.+... +++ +....+.|.++... +..|++|+.||+++.||++.+.+.... .+.+|+++.|+
T Consensus 124 s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy---------~g~pit~vs~s 192 (307)
T KOG0316|consen 124 SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY---------FGHPITSVSFS 192 (307)
T ss_pred eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh---------cCCcceeEEec
Confidence 99999998765 343 44567788888764 578999999999999999988764331 13789999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cccC
Q 005956 450 RDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNS 525 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~ 525 (667)
+++ +..++++-|+++++.|-. +....++++.+...-..++++....++++|++||.|++||+.+....... +...
T Consensus 193 ~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 193 KDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred CCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 996 899999999999999955 67788889877777788899999999999999999999999887654432 2233
Q ss_pred ccceeEEccCCcEEEEe
Q 005956 526 VRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 526 ~~~~~~fs~dg~~lav~ 542 (667)
+...+.|+|.-.-+.++
T Consensus 272 ~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 272 IVTDLSCHPTMDDFITA 288 (307)
T ss_pred eEEeeecccCccceeEe
Confidence 35667777765544443
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-31 Score=284.77 Aligned_cols=209 Identities=30% Similarity=0.541 Sum_probs=190.2
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
......+|.+|.++|..+.|+|+.++|+++++|++||+|.+.+
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t------------------------------------- 482 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT------------------------------------- 482 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeeccc-------------------------------------
Confidence 3445567899999999999999999999999999999999986
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
...+..+.||..+|+++.|+|.| ++||+|.|++.++|.....++++.|. |-..|.|+.|+| +.+|+++|
T Consensus 483 --------~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTG 553 (707)
T KOG0263|consen 483 --------WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATG 553 (707)
T ss_pred --------ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccC
Confidence 34467788999999999999999 99999999999999999999999985 999999999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
|.|.+||+||+.+|..++ +.+|.++|++++|+|+|++|++|+.||.|.+||+.++.+... ...|.+.|.++.
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~-------l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ-------LKGHTGTIYSLS 626 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh-------hhcccCceeEEE
Confidence 999999999999998876 778999999999999999999999999999999998776543 333458999999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcc
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDV 473 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~ 473 (667)
|+.+| ..|++++.|+.|++||+.+.
T Consensus 627 FS~dg-~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 627 FSRDG-NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EecCC-CEEEecCCCCeEEEEEchhh
Confidence 99996 89999999999999997643
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=7.3e-31 Score=254.99 Aligned_cols=310 Identities=17% Similarity=0.296 Sum_probs=240.6
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
.+..+.+.|++|.+.|.|+++.|-..+|+||+.|++|+|||+.+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat------------------------------------ 182 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT------------------------------------ 182 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc------------------------------------
Confidence 34456688999999999999999999999999999999999997
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~s 367 (667)
++...++.||...|..+++++-. +|++++.|+.|+.||++.++.++.+ +|-..|.|++.+| .-+.|++
T Consensus 183 ---------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t 252 (460)
T KOG0285|consen 183 ---------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVT 252 (460)
T ss_pred ---------CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEe
Confidence 34567889999999999999988 9999999999999999999999887 5999999999999 8899999
Q ss_pred EecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 368 GSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|+.|.++++||+++...+ .+.+|...|..+.+.|-...+++|+.|++|++||++.++.... + ..|...+.++
T Consensus 253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t---l----t~hkksvral 325 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT---L----THHKKSVRAL 325 (460)
T ss_pred cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe---e----ecccceeeEE
Confidence 999999999999998766 4778999999999999888999999999999999998876443 1 1223679999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCc
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 526 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 526 (667)
+.+|.. ..+++++.| .|+-|++...........|...|++++...|| ++++|+++|.+.+||.+++..-...+..
T Consensus 326 ~lhP~e-~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-- 400 (460)
T KOG0285|consen 326 CLHPKE-NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-- 400 (460)
T ss_pred ecCCch-hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc--
Confidence 999984 555555555 69999987544333334488899999997765 8889999999999999998653332211
Q ss_pred cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcc
Q 005956 527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERF 580 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f 580 (667)
+..-..-....++|.++...+.. +..+..+.+...|.+....+...+|..+
T Consensus 401 vqpGSl~sEagI~as~fDktg~r---lit~eadKtIk~~keDe~aT~EthPl~w 451 (460)
T KOG0285|consen 401 VQPGSLESEAGIFASCFDKTGSR---LITGEADKTIKMYKEDEHATEETHPLNW 451 (460)
T ss_pred ccCCccccccceeEEeecccCce---EEeccCCcceEEEecccccCcccCCcCC
Confidence 11111122233445555444433 2233445556667665555554555444
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=276.52 Aligned_cols=280 Identities=31% Similarity=0.499 Sum_probs=227.5
Q ss_pred ceeeccc-cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAH-KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H-~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.+.+..| ...|.++.|+|+|++|++++.|+.+++|+......
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 4555454 88999999999999999999999999999864210
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec-CCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~-~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
.....+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++ +|..+|++++|+| .++++++|+.
T Consensus 194 ------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~ 266 (456)
T KOG0266|consen 194 ------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSD 266 (456)
T ss_pred ------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecC
Confidence 1355568999999999999999 9999999999999999 556888888 4999999999999 7799999999
Q ss_pred CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEEEE
Q 005956 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
|++|+|||++++++.. +..|.+.|++++|+++|+.|++++.||.|++||+.++... ...+ .+. .... +++.++|
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--~~~-~~~~-~~~~~~f 342 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL--SGA-ENSA-PVTSVQF 342 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc--cCC-CCCC-ceeEEEE
Confidence 9999999999988775 7788999999999999999999999999999999988743 1111 111 1112 7999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK 523 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~ 523 (667)
+|++ .++++++.|+.+++||+.. ....+.++... ..+.+...++.++++++|+.|+.|++|++.++...... +.
T Consensus 343 sp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 343 SPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred CCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 9996 8999999999999999884 44455554222 24455566889999999999999999999987654432 32
Q ss_pred cCccceeEEccCCcEEEEec
Q 005956 524 NSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 524 ~~~~~~~~fs~dg~~lav~w 543 (667)
........++|...+++...
T Consensus 422 ~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 422 KAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CCceeccccCCCcCeeeecC
Confidence 45555668888777777743
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7e-30 Score=268.99 Aligned_cols=248 Identities=22% Similarity=0.429 Sum_probs=215.6
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
..++|...|+++++||||+++|||++||.|+|||..++
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------------------------------------------ 382 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------------------------------------------ 382 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------------------------------------------
Confidence 34799999999999999999999999999999999863
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCc--EEEEEEeeCCCCEEEEEecCCe
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
-+..+|..|+..|+.++|+..+ .+++++.||+|+.||+...++.++|..+.+ ..|++..| .|.+++.|+.|..
T Consensus 383 ---fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F 458 (893)
T KOG0291|consen 383 ---FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSF 458 (893)
T ss_pred ---eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceE
Confidence 4578899999999999999999 999999999999999999999999975554 46888888 8999999998864
Q ss_pred -EEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 374 -VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 374 -v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
|++|++.+|+++. +.+|.++|.+++|+|+|..|++|+.|.+|++||+-......+.+... ..++.++|.|+
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~-------sdvl~vsfrPd 531 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR-------SDVLAVSFRPD 531 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec-------cceeEEEEcCC
Confidence 9999999999987 67899999999999999999999999999999998776555555443 57999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEe--------------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKG--------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~--------------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
| ..|++++-||.|.+||.....+.... .......+.+++|+||.+|++||+.+.|+||+
T Consensus 532 G-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 G-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred C-CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 7 89999999999999997644333111 12346789999999999999999999999999
Q ss_pred cCCCCcc
Q 005956 512 YDELCFP 518 (667)
Q Consensus 512 ~~~~~~~ 518 (667)
+.++-..
T Consensus 611 v~~~vll 617 (893)
T KOG0291|consen 611 VPEGVLL 617 (893)
T ss_pred Cchhhee
Confidence 9987543
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=8.3e-29 Score=251.70 Aligned_cols=414 Identities=19% Similarity=0.214 Sum_probs=287.5
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------ceeeeeeCCCCCccccCCCCeE
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAKEGKI 276 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 276 (667)
..+.....+..|..+++-.+|||.|-|+|+|...|+|||||.... ....+.+..++..++....|+-
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 344456677899999999999999999999999999999998752 2222333344433332222222
Q ss_pred EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE
Q 005956 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT 353 (667)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~ 353 (667)
++ ..++.++ .+..+.++.||...|+++.|-|.. +++||+.|++|.+|+-.-.+....++ |...|.
T Consensus 127 rf-------g~~F~~D-----SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 127 RF-------GHVFLWD-----SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred ce-------eEEEEec-----CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 11 1111111 245678899999999999999988 99999999999999977777777775 889999
Q ss_pred EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-e---cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-W---ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (667)
Q Consensus 354 ~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~---~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~ 429 (667)
|+.|+| |+.+|++++.||++.+||-.+++.+. + ..|++.|.+++|+||++.+++++.|.+++|||+.++++..+
T Consensus 195 ~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t- 272 (603)
T KOG0318|consen 195 CVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST- 272 (603)
T ss_pred eEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE-
Confidence 999999 99999999999999999999988764 3 36899999999999999999999999999999999876544
Q ss_pred EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956 430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 509 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i 509 (667)
+.+... -...-..+.|..+ .|++.+.+|.|.+++...+.......+|...|++++.+|++++|++|+.||.|.-
T Consensus 273 ~~~~~~---v~dqqvG~lWqkd---~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 273 WPMGST---VEDQQVGCLWQKD---HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred eecCCc---hhceEEEEEEeCC---eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 322221 1244456667643 8999999999999997754433334449999999999999999999999999999
Q ss_pred EEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCCCccccc------------ccC-------CCCC-----Cc--
Q 005956 510 WNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKS------------LCS-------SSLR-----DC-- 561 (667)
Q Consensus 510 Wd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~------------~~~-------~~~~-----~~-- 561 (667)
|+...+..-.. ..+...+..+.-+..+.++.++|.+.-..... +.. .+.. .+
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 99998865333 22334444555566678888888765332110 000 0000 00
Q ss_pred -CccCc-----CCCCCCcccCCCcccCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCc
Q 005956 562 -SQKWD-----NLETAPWIRDSERFSLGSWFSNDGPCRGSATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV 635 (667)
Q Consensus 562 -~~~w~-----~~~~~~~~~~~~~fS~~~~~~~~g~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
....+ ...+........+++|+..+.+.|...|+.-- .++..... ...-+ |......+
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv--ysl~g~~l---------~ee~~-----~~~h~a~i 490 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV--YSLSGDEL---------KEEAK-----LLEHRAAI 490 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE--EEecCCcc---------cceee-----eecccCCc
Confidence 00000 01122344566788999999999998887211 01111000 00000 00000000
Q ss_pred -ccCCCCCceEEEecCCCCeEeeee
Q 005956 636 -RAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 636 -~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
...-+|.|..+|+++..+.|-+|.
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEE
Confidence 145678999999999999999885
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.5e-29 Score=255.43 Aligned_cols=259 Identities=24% Similarity=0.388 Sum_probs=210.7
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
+-+++....+++.|..-|+|+.|+|||.++||++.||+|.|||=.+++
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-------------------------------- 223 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-------------------------------- 223 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------------------------------
Confidence 446667777889999999999999999999999999999999987643
Q ss_pred eecCCCcccccCCcceeee---ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE------------------
Q 005956 288 VVIPDEVFQIEESPLQELH---GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV------------------ 345 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~---gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~------------------ 345 (667)
.+.++. +|.+.|.+|+|+||+ .++|++.|++++|||+.+.+++++
T Consensus 224 -------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk 290 (603)
T KOG0318|consen 224 -------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK 290 (603)
T ss_pred -------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC
Confidence 234444 899999999999999 999999999999999876654432
Q ss_pred --------------------------eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe------------
Q 005956 346 --------------------------FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW------------ 387 (667)
Q Consensus 346 --------------------------~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~------------ 387 (667)
.+|...|+++..+| ++++|++|+.||.|.-||..++..-++
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~ 369 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGM 369 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEE
Confidence 13778899999999 899999999999999998754321100
Q ss_pred cc----------------------------------------------------------------------cCCceEEE
Q 005956 388 AD----------------------------------------------------------------------VRDVISAI 397 (667)
Q Consensus 388 ~~----------------------------------------------------------------------~~~~v~~v 397 (667)
.. ......++
T Consensus 370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v 449 (603)
T KOG0318|consen 370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV 449 (603)
T ss_pred eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence 00 00115678
Q ss_pred EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE
Q 005956 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477 (667)
Q Consensus 398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~ 477 (667)
+++|+++.+++|+.||.+++|.+....+..+.. ...|.++|++++|+||+ .+|+++...+.+.+||........
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-----~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK-----LLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceee-----eecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceec
Confidence 899999999999999999999999876543312 23345899999999996 899999999999999987433222
Q ss_pred E-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 478 K-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 478 ~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
. ..-|...|.+++|+|+.+++|+|+.|-.|.||+++.+...
T Consensus 524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 2 2238999999999999999999999999999999987654
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.1e-29 Score=235.16 Aligned_cols=274 Identities=23% Similarity=0.418 Sum_probs=217.4
Q ss_pred cccceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCC-cee--------------eeeeCCCCCccc-cCCCC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSV-AAS--------------CKSFTDDGGFGS-NAKEG 274 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~-~~~--------------~~~~~~~~~~~~-~~~~~ 274 (667)
+-..+.+++|++.|+.++|+|- |..|||||.|+.|+||+...+ ... .+.+.|.+++++ +..+.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4456789999999999999998 899999999999999999842 122 234556665443 34444
Q ss_pred eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEee-CC
Q 005956 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFD-HH 349 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~~-h~ 349 (667)
...++.+... +.+.+.++.||...|.+++|+++| +||+|+.|+.|-||.+..+ +|..+++ |.
T Consensus 84 t~~Iw~k~~~-------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 84 TVVIWKKEDG-------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred eEEEeecCCC-------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 4455544432 235688999999999999999999 9999999999999999754 5666665 99
Q ss_pred CcEEEEEEeeCCCCEEEEEecCCeEEEEecC-CCe---EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~-~~~---~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
..|..+.|+| ...+|++++.|.+|++|.-. ... +..+..|...|.+++|+|.|..|++++.|++++||-....-
T Consensus 151 qDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 151 QDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred ccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc-
Confidence 9999999999 89999999999999999876 322 34577788899999999999999999999999999866221
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----c--eeeE-EeCCCCCCeEEEEEcCC-CCE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----V--IHKF-KGLPKSGSQMSASFTTT-GKH 497 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~--~~~~-~~~~~~~~v~~v~~spd-g~~ 497 (667)
...|..++..+.|. +| .|++++.|+.|++|.-.. . .... ....|...|+++.|.|. ...
T Consensus 229 ----------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~ 295 (312)
T KOG0645|consen 229 ----------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR 295 (312)
T ss_pred ----------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence 12234788999998 54 899999999999996332 1 1111 12347889999999995 678
Q ss_pred EEEEeCCCcEEEEEcC
Q 005956 498 IISIGDDCRVYVWNYD 513 (667)
Q Consensus 498 l~sgs~Dg~I~iWd~~ 513 (667)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999875
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.8e-28 Score=249.13 Aligned_cols=276 Identities=24% Similarity=0.437 Sum_probs=226.2
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.++|++|.++|++++|+|++++|++++.||.|++|++.+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~---------------------------------------- 41 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---------------------------------------- 41 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC----------------------------------------
Confidence 3567899999999999999999999999999999999852
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
.....+.+|...+..+.|++++ .|++++.|+.|++|++.+++.+..+. |...|.++.|+| ++.++++++.++
T Consensus 42 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 115 (289)
T cd00200 42 -----ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115 (289)
T ss_pred -----CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCC
Confidence 2356677899999999999998 99999999999999999877777665 777999999999 788888888899
Q ss_pred eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.|++||+.+++... +..+...+.+++|+|++.++++++.+|.+++||++..+.... +. .+...|.++.|+|+
T Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-~~------~~~~~i~~~~~~~~ 188 (289)
T cd00200 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-LT------GHTGEVNSVAFSPD 188 (289)
T ss_pred eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee-Ee------cCccccceEEECCC
Confidence 99999999776554 455778899999999998998888899999999986554332 21 23468999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCcccee
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCE 530 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~ 530 (667)
+ ..+++++.++.|++||............+...+.+++|+|++.++++++.||.|++|++.++...... ........+
T Consensus 189 ~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 189 G-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267 (289)
T ss_pred c-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence 6 67888888999999998754333333246779999999999999999988999999999876543332 233456677
Q ss_pred EEccCCcEEEEecC
Q 005956 531 HFFSEGVSVAVQWP 544 (667)
Q Consensus 531 ~fs~dg~~lav~w~ 544 (667)
.|++++..++++..
T Consensus 268 ~~~~~~~~l~~~~~ 281 (289)
T cd00200 268 AWSPDGKRLASGSA 281 (289)
T ss_pred EECCCCCEEEEecC
Confidence 89998888877544
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=5.7e-31 Score=260.02 Aligned_cols=246 Identities=19% Similarity=0.355 Sum_probs=212.4
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+++|..+|.+|.|+++|.++++|..+|.|++|+..-
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------------------------------------------ 169 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------------------------------------------ 169 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------------------------------------------
Confidence 45689999999999999999999999999999998763
Q ss_pred cccCCcceeeeccc-cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~-~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..++.+.+|. ..|.+++|+|+. .+++|+.|++|+|||....+....+ +|.-.|.+++|+| ...+|++|+.|.
T Consensus 170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDn 244 (464)
T KOG0284|consen 170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDN 244 (464)
T ss_pred ----hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCc
Confidence 2345555555 899999999977 9999999999999999888776666 5889999999999 888999999999
Q ss_pred eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.|++||.+++.++. +..|+..|..+.|+|++++|++++.|..|++||+++.+.... .+.|...++++.|+|-
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-------~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-------YRGHKKDVTSLTWHPL 317 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-------hhcchhhheeeccccc
Confidence 99999999998774 778999999999999999999999999999999995544321 3345688999999998
Q ss_pred CCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 452 ESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
...++.+++.||.|..|.+. +.........|...|.+++|+|=|..|++|+.|.++++|....+
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 78899999999999999976 22222233458999999999999999999999999999987654
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=259.17 Aligned_cols=288 Identities=21% Similarity=0.309 Sum_probs=238.4
Q ss_pred cccccccccceeeccccccEEEEEEcCCCCEEEEEECC-CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (667)
Q Consensus 206 ~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~D-g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (667)
..+++.+.+.+.|.--...|..+.|+..|.+||.|+.. |.+-||++++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs------------------------------- 339 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS------------------------------- 339 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-------------------------------
Confidence 34567777788888778899999999999999999864 8999999985
Q ss_pred CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCC
Q 005956 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD 362 (667)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~ 362 (667)
+..+...+||...+++++++||| ++++|+.||.|+|||...+-|..+|. |+..|+.++|+. .+
T Consensus 340 --------------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g 404 (893)
T KOG0291|consen 340 --------------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RG 404 (893)
T ss_pred --------------cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cC
Confidence 34567778999999999999999 99999999999999999999999996 999999999999 99
Q ss_pred CEEEEEecCCeEEEEecCCCeEEEeccc--CCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcC
Q 005956 363 NYFISGSIDGKVRIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~~~~~~~~--~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+.+++.+.||+|+.||+...+..+.... +-...|++..|.|..+.+|+.|. .|.+|++.++++.-. ...|
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-------LsGH 477 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGH 477 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-------hcCC
Confidence 9999999999999999998887664443 34567888888899999999886 699999999887432 4456
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.++|.+++|+|.+ ..|++++.|.+|++||+..............-+..++|+|+|+-|+++.-||.|.+||.+.+....
T Consensus 478 EgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 478 EGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred CCcceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 7999999999996 799999999999999977543333333467789999999999999999999999999987654321
Q ss_pred cc---------------------cccCccceeEEccCCcEEEEecCCCC
Q 005956 520 SK---------------------QKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 520 ~~---------------------~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
.. ......+.++|++||..+..+-....
T Consensus 557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred cccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 10 11123445799999998887654443
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.1e-28 Score=283.90 Aligned_cols=281 Identities=17% Similarity=0.337 Sum_probs=218.4
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+..|.+.|++++|+|+|++||||+.|+.|+||++...... + .
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-------~---------~-------------------- 520 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-------G---------R-------------------- 520 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-------c---------c--------------------
Confidence 345679999999999999999999999999999997641000 0 0
Q ss_pred cccCCcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
....+...+.+ ...|.+++|++. + +|++++.||+|+|||+.+++.+..+. |...|++++|+|.++.+|++|+.|+
T Consensus 521 -~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 521 -DIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred -ccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 00112233333 457999999874 4 99999999999999999998888774 9999999999976789999999999
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEe-eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+|++||+.++..+........+.++.|+ ++|..|++|+.||.|++||++........+ ..|...|+++.|.+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------~~h~~~V~~v~f~~~ 672 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------IGHSKTVSYVRFVDS 672 (793)
T ss_pred EEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------cCCCCCEEEEEEeCC
Confidence 9999999998877655566789999995 479999999999999999998765322221 234578999999743
Q ss_pred CCeEEEEEeCCCcEEEEECCc--------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---
Q 005956 452 ESQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--- 520 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--- 520 (667)
.+|++++.|+.|+|||+.. .+..+.+ |...+..++|+|++.+|++|+.|+.|+||+.........
T Consensus 673 --~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 673 --STLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred --CEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence 6899999999999999863 2344444 778889999999999999999999999999865532211
Q ss_pred -----------ccccCccceeEEccCCcEEEEecC
Q 005956 521 -----------KQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 521 -----------~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
......+..++|+|++..|+++..
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 112234566788888887776554
No 28
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.7e-29 Score=231.40 Aligned_cols=280 Identities=17% Similarity=0.228 Sum_probs=244.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+++++|.+.|.+++|+-+|..||+|+.|++++||++.....
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--------------------------------------- 54 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--------------------------------------- 54 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------------------------
Confidence 67789999999999999999999999999999999985210
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
..-....+|.+.|-.++|+|.. .|++++.|++|++||+..+++.........-.-+.|+| ++.+++.++.|..
T Consensus 55 ----~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp-~g~~~~~~~kdD~ 129 (313)
T KOG1407|consen 55 ----RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSP-DGEYIAVGNKDDR 129 (313)
T ss_pred ----hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcC-CCCEEEEecCccc
Confidence 1123456899999999999866 99999999999999999999999998777777889999 9999999999999
Q ss_pred EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
|.+.|.++.+++........++.++|+.+++.++..+..|.|.|......+... ..+.|.....+|.|+|+|
T Consensus 130 it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~-------si~AH~snCicI~f~p~G- 201 (313)
T KOG1407|consen 130 ITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ-------SIKAHPSNCICIEFDPDG- 201 (313)
T ss_pred EEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc-------ccccCCcceEEEEECCCC-
Confidence 999999999999888888889999999888888888888999999887544332 244556888999999996
Q ss_pred eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEc
Q 005956 454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 533 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs 533 (667)
+++++|+.|..+.+||+.++++.-....+.-+|..++||.||++||+||+|..|-|=++++|......+.......++|+
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWH 281 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWH 281 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEec
Confidence 89999999999999999987766666668899999999999999999999999999999999988887777777788999
Q ss_pred cCCcEEEEecCCCC
Q 005956 534 SEGVSVAVQWPGIG 547 (667)
Q Consensus 534 ~dg~~lav~w~~~~ 547 (667)
|...+||.+.+...
T Consensus 282 Pk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 282 PKRPLLAYACDDKD 295 (313)
T ss_pred CCCceeeEEecCCC
Confidence 99999999876554
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=261.81 Aligned_cols=292 Identities=22% Similarity=0.321 Sum_probs=229.9
Q ss_pred cCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCC-CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 298 EESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
+.+.++++.||+..|+++.|.| .+ +|++++.|+.|+||++-. +.|+++|. |..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 4567889999999999999999 55 899999999999999976 89999995 999999999999 9999999999999
Q ss_pred EEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 374 VRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|++||+++|++.........++|+.|+|++ +.+++|+.|+.|+.||+++++...+ ...|.+.|..+.|-++|
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe-------Yd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE-------YDRHLGAILDITFVDEG 354 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH-------HHhhhhheeeeEEccCC
Confidence 999999999999988899999999999998 8999999999999999999986543 34456889999999996
Q ss_pred CeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956 453 SQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 531 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 531 (667)
.++++++.|+.++||+.... ...+....+.....++..+|+++++++-+.|+.|.|+.+...........
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~-------- 425 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR-------- 425 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh--------
Confidence 89999999999999997643 33333334556677899999999999999999999999765432211110
Q ss_pred EccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC---CCCCCCcCCCCCC
Q 005956 532 FFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS---ATWPAEKLPLWDV 608 (667)
Q Consensus 532 fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~---~~w~~~~~~~~~~ 608 (667)
|- | ....++.-...|||+++|+..|+..|. ..|...|+-.. .
T Consensus 426 fe--G--------------------------------h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~-l 470 (503)
T KOG0282|consen 426 FE--G--------------------------------HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK-L 470 (503)
T ss_pred hc--c--------------------------------eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc-c
Confidence 00 0 001113334578889999998888888 34555544322 1
Q ss_pred cccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956 609 TIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
|...+.|+. +.+++--..+++||||||.|++|.
T Consensus 471 -------------kah~~~ci~-----v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 -------------KAHDQPCIG-----VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------------ccCCcceEE-----EEecCCCcceeEecccCceeEecC
Confidence 111235766 334444566789999999999984
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=266.61 Aligned_cols=250 Identities=25% Similarity=0.417 Sum_probs=211.1
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+++.+|...|.+++|+|||++|++|+.|++|+|||+..
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---------------------------------------- 234 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---------------------------------------- 234 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC----------------------------------------
Confidence 4556689999999999999999999999999999999943
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
....++++.+|...|++++|+|++ ++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|
T Consensus 235 ----~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 235 ----DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred ----CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 134578899999999999999999 99999999999999999999999996 999999999999 99999999999
Q ss_pred CeEEEEecCCCeE--E-EecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 372 GKVRIWGVCEKRV--V-DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 372 g~v~iwdl~~~~~--~-~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
+.|++||+.++.. . ....+.. .+++++|+|++.++++++.|+.+++||+.......... ++... ...+.+.
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~-~~~~~~~ 385 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNL-VRCIFSP 385 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCc-ceeEecc
Confidence 9999999999983 3 3333333 58999999999999999999999999999776654421 11111 1245555
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIG--DDCRVYVWNYD 513 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~ 513 (667)
.+++.+ .++++++.|+.|++||............| ...+..+.++|...++++++ .|+.|++|..+
T Consensus 386 ~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 667764 89999999999999998865444444446 88899999999999999998 78999999765
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.8e-29 Score=241.17 Aligned_cols=249 Identities=22% Similarity=0.389 Sum_probs=221.3
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.-.+...|++|+.+|..|.|+..|++||+++.|=.+++||..+.
T Consensus 139 tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------------------------------------ 182 (406)
T KOG0295|consen 139 TGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF------------------------------------ 182 (406)
T ss_pred chhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH------------------------------------
Confidence 33446789999999999999999999999999999999999851
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
...+..+.+|...|.+++|-|.| ++++++.|.+|+.|++.++.|+++|. |...|..++.+. |+.+++++
T Consensus 183 --------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~ 253 (406)
T KOG0295|consen 183 --------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASC 253 (406)
T ss_pred --------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEec
Confidence 24567788999999999999999 99999999999999999999999996 889999999999 99999999
Q ss_pred ecCCeEEEEecCCCeEE-EecccCCceEEEEEeeC---------------CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 369 SIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPD---------------GKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spd---------------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
+.|.+|++|-+.++++. ....|..+|.+++|-|. ++++.+++.|++|++||+.++.+...
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t---- 329 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT---- 329 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE----
Confidence 99999999999998765 36778888999998663 25889999999999999999877554
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
...|...|..++|+|.| ++|+++..|+++++||+.+..+......|...+++++|+.+-.|+++|+-|..+++|..
T Consensus 330 ---L~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 330 ---LVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---EecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 23346899999999986 99999999999999999987777766679999999999999999999999999999974
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7.2e-28 Score=226.21 Aligned_cols=246 Identities=22% Similarity=0.353 Sum_probs=211.2
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.|+||+.+|+.++|+.+|.+|++++.|.++.||-..+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n------------------------------------------- 41 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN------------------------------------------- 41 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-------------------------------------------
Confidence 4679999999999999999999999999999997654
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC----
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---- 371 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---- 371 (667)
+..+.++.||++.|+++....+. .+++|+.|.++++||+++|+++..+....+|..+.|++ ++++++....+
T Consensus 42 --GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 42 --GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGY 118 (327)
T ss_pred --CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCc
Confidence 45688999999999999998877 99999999999999999999999999999999999999 88888776543
Q ss_pred -CeEEEEecCC-------Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 372 -GKVRIWGVCE-------KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 372 -g~v~iwdl~~-------~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.|.++|++. .. ...+..+...++.+-|.|-+++|++|..+|.|..||++++........ .|...
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~------~h~~~ 192 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE------EHSSK 192 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh------hhccc
Confidence 6799999983 33 445666778899999999999999999999999999998876554333 34478
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeE-------------------------------------------
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKF------------------------------------------- 477 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~------------------------------------------- 477 (667)
|+.++++++. .++++++.|.+-++||..++ +.+|
T Consensus 193 Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 193 INDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred cccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhH
Confidence 9999999995 89999999999999996532 1111
Q ss_pred ----------EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 478 ----------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 478 ----------~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
...+|-++|++++|+|+|+..++|++||.|++..++..
T Consensus 272 yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 272 YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 11248899999999999999999999999999877654
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=232.60 Aligned_cols=248 Identities=21% Similarity=0.306 Sum_probs=217.1
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+++|+++|..+.|.+|+..|+++|.|.+|+.||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t------------------------------------------- 121 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET------------------------------------------- 121 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-------------------------------------------
Confidence 4569999999999999999999999999999999997
Q ss_pred ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
++.+..+++|...|+.+.-+.-| ++.+++.|++++|||+++..+++++.....++++.|.. .+..+++|+.|+.|
T Consensus 122 --G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 122 --GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDI 198 (338)
T ss_pred --ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCce
Confidence 35577888999999999966556 77799999999999999999999999999999999999 88999999999999
Q ss_pred EEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCC
Q 005956 375 RIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 375 ~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
++||++.+.... ..+|.+.|+.+..+|+|.++.+-+.|.++++||++-...... ...+.++..........++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 999999887664 788999999999999999999999999999999986554443 222333333334556678999995
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
..+.+++.|..+++||.......++..+|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 279 -~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 279 -TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred -CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 8999999999999999887777788888999999999999999999999999998743
No 34
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-27 Score=226.02 Aligned_cols=281 Identities=23% Similarity=0.388 Sum_probs=224.0
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+...+.+..-.+.|++|.|+++|.+|+++++|-+++|||..+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-------------------------------------- 45 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-------------------------------------- 45 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC--------------------------------------
Confidence 445566666788999999999999999999999999999986
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s 367 (667)
++.++++..+.-.|..++|.... .++.++. |.+||..++.+++.++.|. |...|..+..+| -++.|++
T Consensus 46 -------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS 117 (311)
T KOG1446|consen 46 -------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLS 117 (311)
T ss_pred -------CceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEe
Confidence 34466677777778888885444 5555555 8899999999999999996 999999999999 6799999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l 446 (667)
++.|++|++||++..++........ -..++|.|.|-.+|++...+.|++||++..... ...+.+.. ......+.+
T Consensus 118 ~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l 193 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDL 193 (311)
T ss_pred cccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeee
Confidence 9999999999999777655443333 245689999999999998889999999976433 33443331 234779999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ- 522 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~- 522 (667)
.|+|+| ++|+.+...+.+++.|.- .....+....... ....++|+||+++|++|+.||+|.+|+++++.......
T Consensus 194 ~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 194 EFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999997 888888999999999965 4556666655444 23678899999999999999999999999998754432
Q ss_pred -ccCccceeEEccCCcEEEEec
Q 005956 523 -KNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 523 -~~~~~~~~~fs~dg~~lav~w 543 (667)
......|+.|+|.-.++|.+.
T Consensus 273 ~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred CCCCCccccccCCceeeeeecC
Confidence 356777888999777776653
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.2e-28 Score=254.93 Aligned_cols=404 Identities=17% Similarity=0.214 Sum_probs=280.2
Q ss_pred cccccceeecc-ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceee-----------eeeCCCCCc---cccCCCC
Q 005956 210 TALYTSQEIQA-HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-----------KSFTDDGGF---GSNAKEG 274 (667)
Q Consensus 210 ~~~~~~~~l~~-H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~-----------~~~~~~~~~---~~~~~~~ 274 (667)
+.....+.+++ |++||..|+|+|.|.+||+||.||.|+|||+..+.+.. +.|.+.... .++..++
T Consensus 92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 33445566677 99999999999999999999999999999998765433 333333211 2233344
Q ss_pred eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee------
Q 005956 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------ 347 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~------ 347 (667)
.++.|+.... ..++..+..|...|+++.|++++ .+++++.|+.+.|||+.+.+++++..
T Consensus 172 ~v~vwnl~~~--------------~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 172 TVRVWNLNDK--------------RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred eEEEEEcccC--------------chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 4444333211 12467788999999999999999 89999999999999965332222211
Q ss_pred --------------------------------------------------------------------------------
Q 005956 348 -------------------------------------------------------------------------------- 347 (667)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (667)
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence
Q ss_pred ----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 348 ----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 348 ----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
.++.|..+.|--.+.++++.++..+.+|+|++.+..+.-+.+|.+.|.++....+|.+|++|+.|.++++|.++++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 1233444444433567777788888888888777777777889999999997778899999999999999999544
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-------c--eeeEEeCCCCCCeEEEEEcCC
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------V--IHKFKGLPKSGSQMSASFTTT 494 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-------~--~~~~~~~~~~~~v~~v~~spd 494 (667)
..... .......|.+.|.+++++..+..+++++|.|.+|++|++.. . ...+....|...|++++++|+
T Consensus 398 ~~~~~---~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 398 CSKSL---CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred cchhh---hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 43322 12224557789999999998889999999999999999875 1 122234568999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCC
Q 005956 495 GKHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAP 572 (667)
Q Consensus 495 g~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 572 (667)
.++|||||.|.+.+||+++....... .|.+.++ ++.|++..+.+|+++.+.. ++++..... ....++..+.
T Consensus 475 dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw-~V~Fs~~dq~laT~SgD~T--vKIW~is~f----SClkT~eGH~ 547 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW-CVSFSKNDQLLATCSGDKT--VKIWSISTF----SCLKTFEGHT 547 (775)
T ss_pred CceEEecccccceeeecccCceEEEEeeCCccceE-EEEeccccceeEeccCCce--EEEEEeccc----eeeeeecCcc
Confidence 99999999999999999996655333 3444444 5699999999999877664 333322111 1112223333
Q ss_pred cccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCC-Cc----ccCCCCCceEE
Q 005956 573 WIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVD-DV----RAISATWGLVI 646 (667)
Q Consensus 573 ~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~g~vi 646 (667)
-.+--+.|-.++..+..+...|- ..|.-.+.. |..+.| |. +.+..+.+..|
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----------------------C~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----------------------CEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----------------------hhhhhhhccceeEEEeecCcccee
Confidence 33444567777777777766665 456543211 221111 11 23445566678
Q ss_pred EecCCCCeEeeeee
Q 005956 647 VTAGCDGMIKTFHN 660 (667)
Q Consensus 647 vta~~~G~ir~f~~ 660 (667)
||||-||+|-.|+.
T Consensus 605 ~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 605 VTGGGDGRIIFWKD 618 (775)
T ss_pred EecCCCeEEEEeec
Confidence 99999999999974
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=229.26 Aligned_cols=234 Identities=15% Similarity=0.245 Sum_probs=194.2
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+..++|+||.+.|.++.|++|. +|++++.||.+.|||.-+......+. ...+|..++|+| .++++++|+.|....||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 4458899999999999999999 99999999999999998888777776 677999999999 99999999999999999
Q ss_pred ecCCC--e----E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 378 GVCEK--R----V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 378 dl~~~--~----~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
++.+. + + ..+..|.+.+.++.|-+| ..|++++.|.++-+||+++++.... ++ .|.+.|.++.++|
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~---f~----GH~gDV~slsl~p 196 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV---FH----GHTGDVMSLSLSP 196 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE---ec----CCcccEEEEecCC
Confidence 99864 2 2 237789999999999775 5899999999999999998876543 33 4568999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---cCcc
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK---NSVR 527 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---~~~~ 527 (667)
...+.+++|+.|+..++||++.........+|..-|++++|.|+|.-+++|++|++.++||+...+....... ...+
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 5569999999999999999996555444455999999999999999999999999999999988765433221 2233
Q ss_pred ceeEEccCCcEEEEe
Q 005956 528 SCEHFFSEGVSVAVQ 542 (667)
Q Consensus 528 ~~~~fs~dg~~lav~ 542 (667)
+.+.|+..|++|-+.
T Consensus 277 tSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAG 291 (343)
T ss_pred eeEEEcccccEEEee
Confidence 445666666655554
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=245.32 Aligned_cols=278 Identities=14% Similarity=0.280 Sum_probs=231.8
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+..|+..|.++.|+|...+++++-..|.|.||+.++.
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---------------------------------------- 45 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---------------------------------------- 45 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc----------------------------------------
Confidence 4456679999999999999999999999999999999862
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..+..+.-..-+|.+..|-+.. .+++|+.|..|+||+..+++.++.|. |.++|.|++.+| ...+++++|.|-
T Consensus 46 -----tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm 119 (794)
T KOG0276|consen 46 -----TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDM 119 (794)
T ss_pred -----eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCcc
Confidence 3456666667788889998766 99999999999999999999999996 999999999999 888999999999
Q ss_pred eEEEEecCCCe--EEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 373 KVRIWGVCEKR--VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 373 ~v~iwdl~~~~--~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+|++||.+.+= ...+.+|...|.+++|+| |.+.+++++-|++|++|.+....... .+. .|...|+++.|-
T Consensus 120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf---Tl~----gHekGVN~Vdyy 192 (794)
T KOG0276|consen 120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF---TLE----GHEKGVNCVDYY 192 (794)
T ss_pred EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce---eee----ccccCcceEEec
Confidence 99999998754 345788999999999999 77899999999999999998665432 222 345789999998
Q ss_pred cCC-CeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-cC
Q 005956 450 RDE-SQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NS 525 (667)
Q Consensus 450 p~g-~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~ 525 (667)
+.| ..+|++|+.|.+|+|||..+ +++++.+ |...|..+.|+|.-..|++||+||+|+||+..+-+......- ..
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle 270 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE 270 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchHHHHHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc
Confidence 754 46999999999999999874 5666666 889999999999999999999999999999988765444322 22
Q ss_pred ccceeEEccCCcEEEEecCCCC
Q 005956 526 VRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 526 ~~~~~~fs~dg~~lav~w~~~~ 547 (667)
..-|+.-.+.+..+|+++....
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCc
Confidence 3334566666777888776554
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=7.6e-29 Score=245.02 Aligned_cols=274 Identities=17% Similarity=0.266 Sum_probs=223.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.-+-+|..+.|.|+|+.|+||+..|.+.+|+..+.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------------------------------------------- 128 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------------------------------------------- 128 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------------------------
Confidence 34568999999999999999999999999997541
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
..-..++.|...|.++.|++++ .+++|..+|.|++|+..-........ |...|++++|+| ++..|++++.||+|+||
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEE
Confidence 1123456899999999999999 99999999999999987554444444 448999999999 88999999999999999
Q ss_pred ecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 378 GVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 378 dl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
|....+.. .+.+|.-.|.+++|+|.-..|++|+.|..|++||.+++..... ++. |...|..+.|+|++ ++|
T Consensus 208 df~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t---lh~----HKntVl~~~f~~n~-N~L 279 (464)
T KOG0284|consen 208 DFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT---LHG----HKNTVLAVKFNPNG-NWL 279 (464)
T ss_pred eccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh---hhh----ccceEEEEEEcCCC-Cee
Confidence 98876543 4578888999999999999999999999999999999887653 232 34789999999997 999
Q ss_pred EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeEEc
Q 005956 457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEHFF 533 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~fs 533 (667)
+++|.|..++++|++.....+....|...++++.|+|-. .++.+|+.||.|+.|.+...+.... ......+-.+.|+
T Consensus 280 lt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 280 LTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH 359 (464)
T ss_pred EEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc
Confidence 999999999999998554444444489999999999954 5778899999999999984433222 2223334456899
Q ss_pred cCCcEEEEecCCCC
Q 005956 534 SEGVSVAVQWPGIG 547 (667)
Q Consensus 534 ~dg~~lav~w~~~~ 547 (667)
|=|.+||.+.++..
T Consensus 360 PlGhil~tgsnd~t 373 (464)
T KOG0284|consen 360 PLGHILATGSNDRT 373 (464)
T ss_pred ccceeEeecCCCcc
Confidence 99999988666543
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1e-28 Score=236.84 Aligned_cols=277 Identities=22% Similarity=0.403 Sum_probs=226.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+.+..+-|..|||||+||++|+.||-|.||+..++.... ++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------------------------DLkY 253 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------------------------DLKY 253 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhh-------------------------------------hhhh
Confidence 566778899999999999999999999999998754310 0111
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
.....|.-|..+|.|+.|+.|. +|++|+.||.|++|.+.+|.|++.|. |+..|+|+.|+. |+..+++++.|.++++
T Consensus 254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRI 332 (508)
T ss_pred hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEE
Confidence 2233456688999999999998 99999999999999999999999995 999999999999 9999999999999999
Q ss_pred EecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 377 wdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
.-+..|+++. +.+|...|+...|.+||..+++++.||++++|+..+..+....-. .....+|.++..-|.++..
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-----~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-----LGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-----CCCcccceeEEEcCCCCce
Confidence 9999999875 888999999999999999999999999999999998776543111 1234789999999988889
Q ss_pred EEEEeCCCcEEEEECC-cceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--ccccCccceeE
Q 005956 456 IMITSEDSKLRILDGV-DVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNSVRSCEH 531 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~-~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~~~~~~~ 531 (667)
++++...++|+|.++. ..++.+. +....+...+++.||.|.++++.++|+.+|.+.+.++..... .+.+.++. +.
T Consensus 408 ~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG-l~ 486 (508)
T KOG0275|consen 408 FIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG-LT 486 (508)
T ss_pred EEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc-cc
Confidence 9999999999999987 4455554 334566778889999999999999999999999998876433 23333333 24
Q ss_pred EccCCcEEE
Q 005956 532 FFSEGVSVA 540 (667)
Q Consensus 532 fs~dg~~la 540 (667)
-+|+-..+|
T Consensus 487 HHPHqNllA 495 (508)
T KOG0275|consen 487 HHPHQNLLA 495 (508)
T ss_pred cCcccchhh
Confidence 455444443
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=7e-27 Score=228.46 Aligned_cols=284 Identities=15% Similarity=0.198 Sum_probs=228.2
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.++|..|+++|.+++.+|+.+++||||.|-.-.||++.++
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---------------------------------------- 96 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---------------------------------------- 96 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------------------------------
Confidence 4577899999999999999999999999999999999873
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
....++.+|...|+++.|+.+| +|+||..+|.|+||++.++.....+. .-..|.-+.|+| ...+|+.|+.||
T Consensus 97 -----e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DG 170 (399)
T KOG0296|consen 97 -----EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDG 170 (399)
T ss_pred -----cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCC
Confidence 3467888999999999999999 99999999999999999998887775 666888899999 999999999999
Q ss_pred eEEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe-----ecc------------
Q 005956 373 KVRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD-----FHD------------ 434 (667)
Q Consensus 373 ~v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~-----~~~------------ 434 (667)
.+.+|.+..+ .+..+.+|..++++=+|.|+|+.+++|..||+|++|+..++......-. .+.
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 9999999994 4455788999999999999999999999999999999988755432110 000
Q ss_pred -c--------------------------cCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC
Q 005956 435 -R--------------------------KKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS 485 (667)
Q Consensus 435 -~--------------------------~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 485 (667)
. ...+...+.++.+.|.. -.+.++|+-||+|.|||+.....+.... |...
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~ 329 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG 329 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCc
Confidence 0 00011112223333321 2467889999999999988655555543 7888
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCCC
Q 005956 486 QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
|+.+.|-+ ..+|++++.||.|++||..++.+....+ +...+-..+.+|+...++......
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 99999988 7899999999999999999998876643 334455668899888877765544
No 41
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.8e-27 Score=226.14 Aligned_cols=273 Identities=19% Similarity=0.379 Sum_probs=207.2
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..-|....+..|++++.+.+|||||.++|||+.|..|+|.|+...-.. .....+.......
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlak-------------s~~~em~~~~~qa------ 160 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAK-------------SKPKEMISGDTQA------ 160 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhh-------------cchhhhccCCccc------
Confidence 445666778899999999999999999999999999999999842111 0000111011100
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEeeCCCcEEEEEEeeCCCCEE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFDHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~~h~~~V~~l~f~p~d~~~l 365 (667)
....+++|..|..+|+++.|+|.. .|++++.|++|+++|+..... .+.|....+|.++.|+| .|.+|
T Consensus 161 --------~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefl 231 (430)
T KOG0640|consen 161 --------RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFL 231 (430)
T ss_pred --------CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceE
Confidence 113468899999999999999988 999999999999999976543 34556778999999999 99999
Q ss_pred EEEecCCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 366 ISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
+.|..-.++++||+.+-++.. -..|.+.|+++.|++.|+..++|+.||.|++||--.+++....-..++ +.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-----gs 306 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-----GS 306 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-----Cc
Confidence 999999999999999988764 346788999999999999999999999999999887777554333333 37
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCC---CeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSG---SQMSASFTTTGKHIISIGD-DCRVYVWNYDEL 515 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~---~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~ 515 (667)
.|++..|..+| +++++++.|..+++|.+. ..+..+.+.+..+ .-+...|+....|++.-.+ .+.+.-||..+.
T Consensus 307 evcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 307 EVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eeeeEEEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 79999999996 999999999999999965 4555665542222 2234556555666655443 345666666554
Q ss_pred C
Q 005956 516 C 516 (667)
Q Consensus 516 ~ 516 (667)
.
T Consensus 386 d 386 (430)
T KOG0640|consen 386 D 386 (430)
T ss_pred h
Confidence 3
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=6e-27 Score=217.90 Aligned_cols=251 Identities=18% Similarity=0.310 Sum_probs=205.8
Q ss_pred cCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe
Q 005956 270 NAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF 346 (667)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~ 346 (667)
...+..+++|.... +.+..+++...+.|+.|...|++ .|++++ ...||+||+.++. ++.+|
T Consensus 16 A~YDhTIRfWqa~t---------------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 16 AGYDHTIRFWQALT---------------GICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred ccCcceeeeeehhc---------------CeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE
Confidence 44555666665543 45577787778899999999999 555554 5689999998775 56677
Q ss_pred e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 347 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 347 ~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
. |...|+.+.|.. +++.+++|+.||+++|||++.-.+.+...+..+|+++..+|+-..|++|..+|.|++||+..+..
T Consensus 80 e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred eccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 5 889999999999 99999999999999999999988888888999999999999999999999999999999998765
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------ceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------VIHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
..+.+.-. ...|.++...||| .+++++...|..++|++.. ++.+++. |.+.+..+.+|||++|
T Consensus 159 ~~~liPe~------~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 159 THELIPED------DTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKY 229 (311)
T ss_pred ccccCCCC------CcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcE
Confidence 54433222 3789999999997 8899999999999999642 2334444 8999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCC-Cc--cccccccCccceeEEccCCcEEEEecCCCC
Q 005956 498 IISIGDDCRVYVWNYDEL-CF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 498 l~sgs~Dg~I~iWd~~~~-~~--~~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
||++|.|.+++||+.++. +. ....+..-++.| +||.||++|+++.++..
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc-~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC-AFSADGEYLVTASSDHT 281 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEee-eeccCccEEEecCCCCc
Confidence 999999999999999987 21 223344566666 99999999999888754
No 43
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=238.17 Aligned_cols=276 Identities=13% Similarity=0.165 Sum_probs=228.8
Q ss_pred ccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEEeeCCCC-EEEEEecCCeEEEEecCCCe
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~ 383 (667)
.+.|+++.|+|.. .|++++.|++++||.++.. ..++.+. ...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 4679999999998 9999999999999998743 3444444 567999999999 777 89999999999999999988
Q ss_pred EEEeccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 384 VVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 384 ~~~~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
+..+... ...+..+.++|++++|++.+..|.|++....++.+... +.+ .+.|..++|+.++ +.|+++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s-~Ki-------eG~v~~~~fsSds-k~l~~~ 362 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS-FKI-------EGVVSDFTFSSDS-KELLAS 362 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe-eee-------ccEEeeEEEecCC-cEEEEE
Confidence 7764332 33578889999999999999999999999988877543 222 3679999999886 888899
Q ss_pred eCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc-------cccccCcccee
Q 005956 460 SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS-------SKQKNSVRSCE 530 (667)
Q Consensus 460 s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~-------~~~~~~~~~~~ 530 (667)
+.+|.|++||++. +++++... ..-.-++++.+++|.|||+|+..|.|.|||.++..... ..+..+.++.+
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred cCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 9999999999884 55666654 23345788889999999999999999999976543211 12456677889
Q ss_pred EEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCCC
Q 005956 531 HFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGSA 596 (667)
Q Consensus 531 ~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~~ 596 (667)
.|++|+++||+++......+++.+.++.+. |.|||+..++..++++.+|||+++|+|.|+..|..
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTV-FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceee-eccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 999999999999999999999777777766 88999999999999999999999999999998874
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.5e-26 Score=232.68 Aligned_cols=245 Identities=22% Similarity=0.388 Sum_probs=211.6
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
-.+..+|..|+++|.+++|+.+|.||++++.||++.+||..++
T Consensus 266 G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g------------------------------------- 308 (524)
T KOG0273|consen 266 GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG------------------------------------- 308 (524)
T ss_pred chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-------------------------------------
Confidence 3445577889999999999999999999999999999999863
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
...+.+.-|..+-.++.|-.+..+++++.|+.|+|+.+....++.++. |.+.|.++.|+| .+.+|++++.
T Consensus 309 --------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~Sd 379 (524)
T KOG0273|consen 309 --------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSD 379 (524)
T ss_pred --------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecC
Confidence 234566678888889999988899999999999999999999988885 999999999999 9999999999
Q ss_pred CCeEEEEecCCCeEE-EecccCCceEEEEEeeCC---------CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 371 DGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG---------KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg---------~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
|++++||.+...... .+..|...|..+.|+|+| ..+++++.|+++++||+..+..... ...|.
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~-------f~kH~ 452 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT-------LMKHQ 452 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe-------eccCC
Confidence 999999998776555 577888999999999965 4688999999999999998766543 33456
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.+|.+++|+|+| .++++|+.||.|.||+... ..+.++ ..+.|..++|+.+|.+|..+-.|+.+.+-|+.
T Consensus 453 ~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s~~---~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 453 EPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKSYQ---GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CceEEEEecCCC-cEEEecCCCCeeEeccccchheeEeec---CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 899999999996 8999999999999999764 444444 46679999999999999999999999998874
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1e-25 Score=228.79 Aligned_cols=244 Identities=26% Similarity=0.477 Sum_probs=205.5
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
....+..|...|..+.|+|++++|++++.||.|++|++.+.
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--------------------------------------- 83 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--------------------------------------- 83 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc---------------------------------------
Confidence 34567789999999999999999999999999999999852
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
+.+..+..|...|.++.|++++ ++++++.|+.|++||+.+++....+. |...|.++.|+| ++.++++++.|
T Consensus 84 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~ 156 (289)
T cd00200 84 ------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156 (289)
T ss_pred ------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCC
Confidence 3456677888899999999988 77777779999999999888888776 888999999999 78888888889
Q ss_pred CeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 372 GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 372 g~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+.|++||+.+++... +..+...+.+++|+|+++.+++++.+|.+++||++....... ...+...+.++.|+|
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~ 229 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-------LRGHENGVNSVAFSP 229 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc-------hhhcCCceEEEEEcC
Confidence 999999999777554 456667899999999999999999999999999987544322 112346899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
+ +.++++++.++.|++||............|...+.+++|+|++++|++++.|+.|++|+
T Consensus 230 ~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 D-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred C-CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8 47777777899999999875443333335778899999999999999999999999996
No 46
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.2e-26 Score=218.71 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=219.1
Q ss_pred cccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 220 AHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 220 ~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
.-.+.|.+++||| ...+|+.|+.||+||+|+++....
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------------------------------ 62 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------------------------------ 62 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc------------------------------------------
Confidence 3578899999999 555777999999999999985100
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCC--EEEEEecCCeEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVR 375 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~ 375 (667)
.. -+....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ ... .|++|+.|.+|+
T Consensus 63 ~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 63 LV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLK 140 (347)
T ss_pred cc-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEeccccccee
Confidence 01 13345789999999999999 99999999999999999998888888999999999988 555 799999999999
Q ss_pred EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
.||++....+......+.+.++..-. ..+++++.+..|.+|++++.....+.+.-. ..-.+.+++..++. ..
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~Sp-----Lk~Q~R~va~f~d~-~~ 212 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIESP-----LKWQTRCVACFQDK-DG 212 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhcCc-----ccceeeEEEEEecC-Cc
Confidence 99999999888888888888876543 478899999999999998765543322111 23568899998885 55
Q ss_pred EEEEeCCCcEEEEECCcc----eeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-ccc
Q 005956 456 IMITSEDSKLRILDGVDV----IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQK 523 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~----~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~ 523 (667)
.+.|+-+|.+.|..+... ...|+.|.. -..|++++|+|.-..|+|+|.||++.+||-+....... ...
T Consensus 213 ~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 213 FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 699999999999876542 234444432 23578899999999999999999999999877655444 455
Q ss_pred cCccceeEEccCCcEEEEecCCC
Q 005956 524 NSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 524 ~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
...++|..|+.+|.++|.+-..+
T Consensus 293 ~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCccceeEecCCCCEEEEEeecc
Confidence 67788889999999999874443
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=248.30 Aligned_cols=277 Identities=16% Similarity=0.256 Sum_probs=227.7
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
..-+..|..++|+|...+++++-..|+|++||..-
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------------------------------------------- 40 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------------------------------------------- 40 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhh---------------------------------------------
Confidence 34567788999999999999999999999999873
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
...+..|..|.++|..++|+|++ ++++|+.|..|+||+..+.+|+.++ +|-++|..+.|++ .-..|+++|.|.+|+|
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrI 119 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRI 119 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEE
Confidence 34578889999999999999999 9999999999999999999999877 5999999999999 8889999999999999
Q ss_pred EecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee----------------------Eeec
Q 005956 377 WGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK----------------------VDFH 433 (667)
Q Consensus 377 wdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~----------------------~~~~ 433 (667)
|+..+++++. ..+|...|.|..|+|....+++++-|.+|++||+.+-+..... ....
T Consensus 120 WNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 120 WNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred EeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 9999998775 7889999999999999999999999999999999753221110 0000
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
.-...|...|+-++|+|.- .++++|+.|..|++|.+.... ..-...+|...|.++-|+|...+|++.|+|+.|+|||
T Consensus 200 ~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 1123456779999999984 799999999999999876322 2222334899999999999999999999999999999
Q ss_pred cCCCCccccc-cccCccceeEEccCCcEEEEe
Q 005956 512 YDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 512 ~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~ 542 (667)
+......... +.....-+++-+|....+|++
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeee
Confidence 9876654433 333334456777777777664
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.9e-27 Score=219.15 Aligned_cols=240 Identities=20% Similarity=0.369 Sum_probs=205.8
Q ss_pred ccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
-.+.+..++|+++. ..+++++.||+++|||+.. ..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------------------------------~s 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------------------------------PS 94 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------------------------------CC
Confidence 46789999999864 5889999999999999653 35
Q ss_pred CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
+|++.++.|..+|.++.|++.. .+++++.|++|++|+...++.+.+|. |..-|...+|+|..+++|++++.|+++++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 7899999999999999999855 78888999999999999999999985 99999999999999999999999999999
Q ss_pred EecCC-CeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 377 WGVCE-KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 377 wdl~~-~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
||++. ++.+.+..|...+.++.|+. +.+.+++|+.|+.|+.||++..+.+...+ ..|+-.|..+.|+|.-..
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL------~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL------NGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee------cCCceEEEEEecCcchhh
Confidence 99976 55666777888999999998 66788999999999999999877654333 334588999999998778
Q ss_pred EEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 005956 455 RIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~ 512 (667)
.|++++.|-+++|||... .+.++. .|...+..+.||+ ++.++|+.+-|+.++||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999999762 333333 3888899999987 5678999999999999984
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=230.17 Aligned_cols=244 Identities=24% Similarity=0.436 Sum_probs=203.4
Q ss_pred ccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
...+++...|.||+|.|.|+.|. .+.|++|+.|.+|+|||+++
T Consensus 224 ~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t----------------------------------- 266 (499)
T KOG0281|consen 224 KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT----------------------------------- 266 (499)
T ss_pred cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-----------------------------------
Confidence 34567778899999999999986 56999999999999999997
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE---E-eeCCCcEEEEEEeeCCCCE
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN---V-FDHHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~---~-~~h~~~V~~l~f~p~d~~~ 364 (667)
++++.++.+|...|..+.|+. |++++++.|.+|.+||+....-+. + .+|...|..+.| +.++
T Consensus 267 ----------ge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~ky 332 (499)
T KOG0281|consen 267 ----------GEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKY 332 (499)
T ss_pred ----------CchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccce
Confidence 467888999999999999984 799999999999999998765332 2 259999999999 5689
Q ss_pred EEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 365 FISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+++++.|.+|++|++.+++.+. +.+|+..|.|+.| .|+++++|+.|.+|++||+..+.+... ...|..-|
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-------LeGHEeLv 403 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELV 403 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-------HhchHHhh
Confidence 9999999999999999999886 6678888888876 578999999999999999998876532 22345779
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.++.|.. +.+++|+.||+|+|||+.... +......|.+.|..+.| |...|++++.|.+|.|||+.+
T Consensus 404 RciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 404 RCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 9999964 589999999999999975321 22233458889999998 466899999999999999987
Q ss_pred CCc
Q 005956 515 LCF 517 (667)
Q Consensus 515 ~~~ 517 (667)
+..
T Consensus 479 ~~~ 481 (499)
T KOG0281|consen 479 GPP 481 (499)
T ss_pred CCc
Confidence 643
No 50
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=9e-26 Score=216.66 Aligned_cols=272 Identities=18% Similarity=0.243 Sum_probs=220.0
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
-+..|.+|.|+|.+..|+.++.||++++|++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------------------------------------------- 45 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------------------------------------------- 45 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch----------------------------------------------
Confidence 3678999999999999999999999999999852
Q ss_pred cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
.+.....|..++++++|.++..+++|+.||.|+.+|+.++.....-.|..+|.|+.+.+ ..+.+++|+.|++|++||.+
T Consensus 46 ~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 46 SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecc
Confidence 12223358899999999998899999999999999999999988888999999999999 78899999999999999999
Q ss_pred CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 381 EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 381 ~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
....+........|.++.. .|+.|++|+.+..+.+||+++.....+. ....-...+.++++.|++ .-+++++
T Consensus 125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~-eGy~~sS 196 (323)
T KOG1036|consen 125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNG-EGYVVSS 196 (323)
T ss_pred ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCC-CceEEEe
Confidence 8666655555667777665 5789999999999999999987765421 111123678999999964 6688899
Q ss_pred CCCcEEEEECCc------ceeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc-Cc
Q 005956 461 EDSKLRILDGVD------VIHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-SV 526 (667)
Q Consensus 461 ~dg~I~iwd~~~------~~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~ 526 (667)
-||.|.+=.... ....|+.|.. ..+|++++|+|-...+|||+.||.|.+||+.+.+.....+.- ..
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~S 276 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETS 276 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCc
Confidence 999988754332 2233333221 247899999999999999999999999999988765555443 55
Q ss_pred cceeEEccCCcEEEEecCCCC
Q 005956 527 RSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~~~ 547 (667)
+..++|+.||..||++.+...
T Consensus 277 I~slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred eEEEEeccCCCeEEEEechhh
Confidence 788899999999999877543
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=244.30 Aligned_cols=256 Identities=18% Similarity=0.291 Sum_probs=216.1
Q ss_pred ccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 209 FTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 209 ~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
...++. +.+.||+..|.++....+|-+||||+.|.++++|.+++...
T Consensus 353 ~~~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------------------- 399 (775)
T KOG0319|consen 353 LPTSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------------------- 399 (775)
T ss_pred cCCCce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc--------------------------------
Confidence 344443 48899999999999777889999999999999999854211
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE---eEEe-------eCCCcEEEEE
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC---LNVF-------DHHNYVTCVQ 356 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~---~~~~-------~h~~~V~~l~ 356 (667)
...++....||++.|.+++++..+ +|+++|.|+++++|++...+. ...+ .|...|+|++
T Consensus 400 ---------~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 400 ---------KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred ---------hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 123456677999999999998777 999999999999999976221 1111 3999999999
Q ss_pred EeeCCCCEEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 357 f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
.+| ++++|++||.|.+.+||++....+. .+.+|...|.++.|+|..+.+++++.|++|+||.+.+..+...
T Consensus 471 ia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT------- 542 (775)
T KOG0319|consen 471 IAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT------- 542 (775)
T ss_pred ecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee-------
Confidence 999 9999999999999999999987766 4788999999999999999999999999999999998876532
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
...|...|..++|-.+| ..|++++.||.|++|++.+..+......|...|.+++.+|.+.+++||+.||.|.+|.=.+.
T Consensus 543 ~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 33456899999999986 89999999999999999866655555569999999999999999999999999999975443
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=9.3e-26 Score=220.61 Aligned_cols=274 Identities=17% Similarity=0.243 Sum_probs=222.2
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeee-----------CCCCC-ccccCCCCeEEeccc
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSF-----------TDDGG-FGSNAKEGKIKFGKK 281 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~ 281 (667)
..-++.+|++.|+++.||.||.|||||+.+|.|+||++.++......+ ++.+. ++++..++.+-.|..
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 345678999999999999999999999999999999999876555443 33332 223334444333322
Q ss_pred CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEe
Q 005956 282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN 358 (667)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~ 358 (667)
.. +...+.+.||..++++=.|.|+| +++++..||+|++||..+++++.... ......++.++
T Consensus 178 p~---------------~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 178 PS---------------QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred CC---------------cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence 21 25577889999999999999999 99999999999999999999998886 44477899999
Q ss_pred eCCCCEEEEEecCCeEEEEecCCCeEEEecc---------cCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcce
Q 005956 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDWAD---------VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~---------~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
. .+..++.|+.++.+++-+..+++++.... +...+.++.+.| .=.+.|+|+.||+|.|||+....+.
T Consensus 243 ~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 243 L-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred c-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 8 89999999999999999999999876443 233455555555 4467899999999999999876654
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCR 506 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~ 506 (667)
. ...|...|+.+.|-++ .+|++++.+|.|+.||.+....++...+|...|.+++++|+.++++|+|.|++
T Consensus 322 ~--------~c~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 322 H--------ICEHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred e--------eccCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 2 2334577999999984 69999999999999999987777777779999999999999999999999999
Q ss_pred EEEEEcC
Q 005956 507 VYVWNYD 513 (667)
Q Consensus 507 I~iWd~~ 513 (667)
.+||++.
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999875
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=215.96 Aligned_cols=242 Identities=21% Similarity=0.344 Sum_probs=205.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+++|.++|++++.+ |+|+|+||.|-+|+|||+..
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k------------------------------------------ 72 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK------------------------------------------ 72 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccc------------------------------------------
Confidence 4567999999999986 88999999999999999985
Q ss_pred cccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
...+..+-.|.+.|+++.|.++- .|++|+.||.|.+|++....++..++ |...|+.++.+| .+++.++.+.|
T Consensus 73 ---~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D 148 (362)
T KOG0294|consen 73 ---RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGD 148 (362)
T ss_pred ---hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCC
Confidence 34566777899999999998765 89999999999999999999999996 888999999999 99999999999
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+.+++||+-.++.-.........+.+.|+|.|.+++++..+ .|-+|.+.+..+-.. +.. ...+.++.|...
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~-i~~-------~~r~l~~~~l~~ 219 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE-IEN-------PKRILCATFLDG 219 (362)
T ss_pred ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh-hhc-------cccceeeeecCC
Confidence 99999999999887777777777789999999999998866 688998876654322 111 145777777654
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~--spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
..+++|+.|+.|.+||............|...|-++.+ .|++.||+|+|.||.|+|||++...
T Consensus 220 --~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 220 --SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred --ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 59999999999999998854444444458999999884 6788999999999999999998763
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=5.1e-26 Score=223.37 Aligned_cols=253 Identities=18% Similarity=0.268 Sum_probs=212.0
Q ss_pred ccceeeccccccEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDG---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg---~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
....++.+|.++|.++++.... ..|++|+.|.++++|.++.+...
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-------------------------------- 182 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-------------------------------- 182 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh--------------------------------
Confidence 4456788999999988875433 36999999999999998753221
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------------------------CeEe
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------------------------NQCL 343 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------------------------~~~~ 343 (667)
.+.+..-.||...|.++...+++ ++++|+.|.+|+||+..+ +.++
T Consensus 183 ---------~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 183 ---------VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred ---------hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 12233445999999999999999 999999999999999321 1223
Q ss_pred EEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956 344 NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (667)
Q Consensus 344 ~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~ 422 (667)
.++ +|..+|.++.|.+ ...+++++.|.+|+.||+.++...........++++.++|..++|++|+.|..+++||.++
T Consensus 254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 333 4999999999996 7789999999999999999999988788888999999999999999999999999999998
Q ss_pred CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
+.-......+.+| .+.|.++.|+|.+...|++++.|+++++||++... ..|...+|...|.++.|+ ++.+|++|
T Consensus 332 ~~gs~v~~s~~gH----~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG 406 (423)
T KOG0313|consen 332 GDGSVVSQSLIGH----KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG 406 (423)
T ss_pred CCCceeEEeeecc----hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence 8766555555554 57999999999988899999999999999999665 667777799999999996 67899999
Q ss_pred eCCCcEEEEEcC
Q 005956 502 GDDCRVYVWNYD 513 (667)
Q Consensus 502 s~Dg~I~iWd~~ 513 (667)
|.|++|+|+.-.
T Consensus 407 GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 407 GADNKLRIFKGS 418 (423)
T ss_pred cCcceEEEeccc
Confidence 999999998754
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=228.02 Aligned_cols=252 Identities=21% Similarity=0.299 Sum_probs=206.9
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+.+.+++.+|..+|..+.||||.+||++++.|..+++||+.+++..
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~---------------------------------- 304 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR---------------------------------- 304 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh----------------------------------
Confidence 5667899999999999999999999999999999999999985432
Q ss_pred CCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~s 367 (667)
+.+ .+|...+.+++|.||| .+++|+.|+++..||++... +.... ....|.+++..+ ||+++++
T Consensus 305 -----------~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~ 371 (519)
T KOG0293|consen 305 -----------HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLL 371 (519)
T ss_pred -----------hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEE
Confidence 111 2356789999999999 99999999999999998543 33332 345799999999 9999999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
...|..|++|+..+...........+|++++++.||+++++.-.+..+++||+..+.+..+ +.+++. +..|..-+
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k---Y~Ghkq--~~fiIrSC 446 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK---YFGHKQ--GHFIIRSC 446 (519)
T ss_pred EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH---hhcccc--cceEEEec
Confidence 9999999999998877766777788999999999999999999999999999997766543 222211 24466666
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~ 515 (667)
|-..+..++++|++|+.|+||+...........+|...|++++|+|.. .++|+||+||+|+||.....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 765545799999999999999977554444445589999999999976 46899999999999987654
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.7e-27 Score=228.23 Aligned_cols=231 Identities=23% Similarity=0.399 Sum_probs=194.4
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
....|.|+.+. ...+++|..|.+|+|||..+. .
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~---------------------------------------------~ 228 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL---------------------------------------------E 228 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH---------------------------------------------H
Confidence 45689999986 447999999999999999862 4
Q ss_pred cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
.+..+.||++.|.|+.|... .+++|+.|.+|+|||++++++++++ .|...|..+.|+ ..++++++.|.++.+||+
T Consensus 229 c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDM 304 (499)
T ss_pred HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEec
Confidence 46778999999999998643 8999999999999999999999887 588899999995 579999999999999999
Q ss_pred CCCeEE----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 380 CEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 380 ~~~~~~----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
....-+ .+.+|...|+.+.|+ .+++++++.|.+|++|++.+...... ...|...|.|+++. +++
T Consensus 305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt-------l~gHkRGIAClQYr---~rl 372 (499)
T KOG0281|consen 305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT-------LNGHKRGIACLQYR---DRL 372 (499)
T ss_pred cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh-------hhcccccceehhcc---CeE
Confidence 876533 256889999999985 46999999999999999998776543 22334678888875 379
Q ss_pred EEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 456 IMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
+++|+.|.+|++||+.. +...+++ |..-|.++.| |.+.|++|+.||+|+|||+..+.-+
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhc--hHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 99999999999999874 4455555 8899999999 4689999999999999999887544
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=4.5e-26 Score=221.75 Aligned_cols=253 Identities=20% Similarity=0.338 Sum_probs=215.6
Q ss_pred ccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956 207 MEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (667)
.++..-.+..+|.||...|..+++|+-..||+++++|+.|+.||+..
T Consensus 178 wDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~--------------------------------- 224 (460)
T KOG0285|consen 178 WDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY--------------------------------- 224 (460)
T ss_pred EEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh---------------------------------
Confidence 34455566778999999999999999999999999999999999985
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~ 364 (667)
.+.++.+.||-..|.+++.+|.- .|++|+.|.+++|||+++...+.++. |..+|..+.+.| .+..
T Consensus 225 ------------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpq 291 (460)
T KOG0285|consen 225 ------------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQ 291 (460)
T ss_pred ------------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCc
Confidence 45688899999999999999987 99999999999999999999888885 999999999999 6678
Q ss_pred EEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 365 FISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+++|+.|++|++||++.++.. ....|+..+.+++.+|....+|+++.| .|+-|++..+..... ...|..-|
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n-------lsgh~~ii 363 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN-------LSGHNAII 363 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc-------ccccccee
Confidence 999999999999999998865 578889999999999999999998877 789999987765432 23345789
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeE---Ee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKF---KG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~---~~---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.++....|| ++++|+.+|.|.+||..... +.. .. ......|.+.+|...|..|++|..|.+|++|.-+..
T Consensus 364 ntl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 364 NTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 999999986 99999999999999976321 111 11 113457889999999999999999999999986543
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-25 Score=230.43 Aligned_cols=252 Identities=19% Similarity=0.268 Sum_probs=213.4
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
....+.+.+.-..-+|.+.+|-+-.+++++|++|..|+||+..+
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------------------------------------ 86 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------------------------------------ 86 (794)
T ss_pred ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------------------------------------
Confidence 34556677777888999999999999999999999999999987
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEee-CCCcEEEEEEeeCCCCEEE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~d~~~l~ 366 (667)
...++.|..|.+-|.+++.+|.. +++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|+
T Consensus 87 ---------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 87 ---------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ---------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 35588999999999999999998 9999999999999999865 6778885 9999999999999999999
Q ss_pred EEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 367 SGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+++.|++|++|.+.+..+. .+.+|...|+|++|-+.| .+|++|+.|.++++||..+..+... ...|...|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T-------LeGHt~Nv 230 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT-------LEGHTNNV 230 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH-------hhcccccc
Confidence 9999999999999876654 577899999999998855 5999999999999999998776543 23345789
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
..+.|+|. -.++++|+.||+++||+..+....-...-....+.+++-.+.+..|+.|.+.|.|.| .+...
T Consensus 231 s~v~fhp~-lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgre 300 (794)
T KOG0276|consen 231 SFVFFHPE-LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGRE 300 (794)
T ss_pred eEEEecCC-CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCC
Confidence 99999998 589999999999999997654433333225678999999898889999988776643 44333
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=231.38 Aligned_cols=287 Identities=19% Similarity=0.290 Sum_probs=210.5
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeee----------------eCCCC-CccccCCCCeEEe
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKS----------------FTDDG-GFGSNAKEGKIKF 278 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~ 278 (667)
-.|++|+..|.++++.|.|..|+||+.|-+|++||+......... +++.+ .+++........+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 457899999999999999999999999999999999865433322 22222 1222222222222
Q ss_pred cccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-EeEEee------CC
Q 005956 279 GKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD------HH 349 (667)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-~~~~~~------h~ 349 (667)
++..+....-......+- ..+..-+||...++|-+|+|.. .++|++.||++||||+...+ .+.++. ..
T Consensus 241 ~DRdG~~~~e~~KGDQYI---~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYI---RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred EccCCceeeeeeccchhh---hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 222221111111111000 1123446999999999999987 89999999999999997653 344443 23
Q ss_pred CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE----EecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV----DWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~----~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
-+++.++|+| +++.|++|..||.|.+|+.....+. .-..|.. .|+||.|++||++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 4789999999 9999999999999999998553321 1234544 7999999999999999999999999999987
Q ss_pred cceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEe------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC
Q 005956 424 DLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 496 (667)
Q Consensus 424 ~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~ 496 (667)
+..+. ...+.. ..+-+.++|+|+. ++|++|. ..|.+.+||..+....++..-....|..+.|+|.-+
T Consensus 397 kkpL~~~tgL~t-----~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 397 KKPLNVRTGLPT-----PFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred ccchhhhcCCCc-----cCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 76654 222322 2567889999995 7788775 346899999887777777665688899999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 005956 497 HIISIGDDCRVYVWNY 512 (667)
Q Consensus 497 ~l~sgs~Dg~I~iWd~ 512 (667)
.|+.|+.||.++||==
T Consensus 471 Qi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 471 QIFAGSGDGTAHVYYD 486 (641)
T ss_pred heeeecCCCceEEEEC
Confidence 9999999999998843
No 60
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=213.93 Aligned_cols=310 Identities=18% Similarity=0.242 Sum_probs=217.8
Q ss_pred CCcchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC---------------Cce
Q 005956 192 PKANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS---------------VAA 256 (667)
Q Consensus 192 ~~~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~---------------~~~ 256 (667)
++++..+.++.+++...|........|++|.+.|++|+|+.||++|||++.|++|+||++.. ..+
T Consensus 56 kkk~hqr~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp 135 (420)
T KOG2096|consen 56 KKKKHQRNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP 135 (420)
T ss_pred chhcccchhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc
Confidence 44455566777777778888888899999999999999999999999999999999999874 245
Q ss_pred eeeeeCCCCC-ccc-cCCCCeEEecccC---CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC
Q 005956 257 SCKSFTDDGG-FGS-NAKEGKIKFGKKK---SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK 330 (667)
Q Consensus 257 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg 330 (667)
+.+.|.++.. ++. .....++..+... .+.... +. +.......-+.|.-.|..+-...++ +|++++.|.
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~--~~----v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt 209 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH--HF----VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT 209 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc--cc----ccccccccchhcccceEEEeecCCceEEEEecCCC
Confidence 5667777763 222 2233333332211 111000 00 0001111223566777777776666 999999999
Q ss_pred cEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC---C------eEEEecccCCceEEEEEe
Q 005956 331 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---K------RVVDWADVRDVISAICYI 400 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~---~------~~~~~~~~~~~v~~v~~s 400 (667)
+|.||++. |+.+..+. ....-+..+.+| +|+++++++...-|++|.+-- | ++..+.+|...|..+||+
T Consensus 210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred cEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence 99999999 88888775 444667788999 999999999999999998632 2 244678899999999999
Q ss_pred eCCCEEEEEecCCcEEEEEecCCcceee---eEe-eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--e
Q 005956 401 PDGKGFIVGSITGTCHFYKASGNDLKLE---KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--I 474 (667)
Q Consensus 401 pdg~~l~~gs~dg~i~l~d~~~~~~~~~---~~~-~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~ 474 (667)
|+...+++.+.||++++||+.-.....+ .+. ........++.-..+.++|+| .+++.+....+++|..++. .
T Consensus 288 n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 288 NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDY 365 (420)
T ss_pred CCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccc
Confidence 9999999999999999999863211110 000 000011123344589999997 4455555677999986642 2
Q ss_pred eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 475 HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 475 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
..+.. .|...|.+++|+++|+|+++++ |..+++..-.
T Consensus 366 ~~~e~-~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 366 PELED-IHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred hhHHH-hhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 22222 2889999999999999999998 7888887633
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=4e-25 Score=258.69 Aligned_cols=241 Identities=16% Similarity=0.234 Sum_probs=198.4
Q ss_pred ccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+...|.+++|+| ++.+||+++.||+|+|||+.+ .
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------------------------------~ 565 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------------------------------S 565 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------------------------------C
Confidence 346799999987 478999999999999999985 2
Q ss_pred CcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+.+..+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.|+.|++|
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iw 645 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYY 645 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 34567789999999999997 55 89999999999999999999998888778899999976589999999999999999
Q ss_pred ecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee--e-eEeeccccCcCCCCeEEEEEccCC
Q 005956 378 GVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--E-KVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 378 dl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~--~-~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|++..+ ...+..|...|.++.|. ++.+|++++.|++|++||++...... . ... ...|...+..+.|+|++
T Consensus 646 D~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~----~~gh~~~i~~v~~s~~~ 720 (793)
T PLN00181 646 DLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS----FMGHTNVKNFVGLSVSD 720 (793)
T ss_pred ECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE----EcCCCCCeeEEEEcCCC
Confidence 998765 34567788999999996 78899999999999999997532110 0 111 22345788999999996
Q ss_pred CeEEEEEeCCCcEEEEECCcce--eeEE-----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 453 SQRIMITSEDSKLRILDGVDVI--HKFK-----------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~--~~~~-----------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
.+|++++.|+.|++|+..... ..+. ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 721 -~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 721 -GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 799999999999999965321 1111 1224567999999999999999999999999986
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=237.29 Aligned_cols=274 Identities=19% Similarity=0.316 Sum_probs=225.0
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce---------eeeeeCCCC-CccccCCCCeEEecccCCCCc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA---------SCKSFTDDG-GFGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 286 (667)
++.+|...|.+++||.|...+++|+. +.|+||+..+..+ .+..|.|.+ ..+.+.+.|.+.+++..+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-- 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-- 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh--
Confidence 57799999999999999888888765 6799999997654 334455554 3344555566555544432
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-----C---eEe-----EEeeCCCcE
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----N---QCL-----NVFDHHNYV 352 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-----~---~~~-----~~~~h~~~V 352 (667)
..+.+...|.+.|++++.+||+ .+++||.|++|++||..- + +.+ +++...+.|
T Consensus 445 -------------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 445 -------------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred -------------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 3355667999999999999999 999999999999999631 1 111 334467899
Q ss_pred EEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956 353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (667)
Q Consensus 353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~ 431 (667)
.|+.++| |+++|+.+-.|.+|++|-+.+-+. +.+.+|.-+|.|+.++||++.+++|+.|.+|++|-+.=+.+..
T Consensus 512 L~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---- 586 (888)
T KOG0306|consen 512 LCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---- 586 (888)
T ss_pred EEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh----
Confidence 9999999 999999999999999999999875 4688999999999999999999999999999999888666532
Q ss_pred eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
...+|...|.+++|.|. ...+++++.|+.|+-||..+........+|...|.+++.+|+|.|++++|.|..|++|.
T Consensus 587 ---S~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 587 ---SFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ---hhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 24456689999999997 58999999999999999887665555566999999999999999999999999999999
Q ss_pred cCCC
Q 005956 512 YDEL 515 (667)
Q Consensus 512 ~~~~ 515 (667)
....
T Consensus 663 ~tde 666 (888)
T KOG0306|consen 663 RTDE 666 (888)
T ss_pred ccCc
Confidence 8763
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=216.21 Aligned_cols=270 Identities=21% Similarity=0.352 Sum_probs=230.5
Q ss_pred eeeccccccEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSP---DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fsp---dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
++..+|+.+|..++||| +|-+|++++.||.-.+-+-+++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-------------------------------------- 49 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-------------------------------------- 49 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------------------------------------
Confidence 45679999999999985 8889999999997666554442
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
.=+.+|.||.+.|+..+...+. +.++++.|-+.+|||.-+|..+..|.|..-|..++|+. |.++|++|+.+
T Consensus 50 -------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~e 121 (334)
T KOG0278|consen 50 -------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQE 121 (334)
T ss_pred -------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccchH
Confidence 3378899999999999999888 88899999999999999999999999999999999999 99999999999
Q ss_pred CeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 372 GKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
..+||||++..+ +..+.+|.+.|..+.|....+.|++.+.|++||+||.+++..... +.+ ..+|+++..+
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s-L~~-------~s~VtSlEvs 193 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS-LEF-------NSPVTSLEVS 193 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE-Eec-------CCCCcceeec
Confidence 999999998754 556889999999999999999999999999999999999876543 222 2679999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--ccccC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS--KQKNS 525 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~--~~~~~ 525 (667)
++| .+++....+.|.+||.... +..++ -...|.+++++|+...+++|++|..++.||+.+++..-. .....
T Consensus 194 ~dG--~ilTia~gssV~Fwdaksf~~lKs~k---~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 194 QDG--RILTIAYGSSVKFWDAKSFGLLKSYK---MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred cCC--CEEEEecCceeEEeccccccceeecc---CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 997 6778888889999997643 33333 356789999999999999999999999999999987554 45567
Q ss_pred ccceeEEccCCcEEEEecC
Q 005956 526 VRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 526 ~~~~~~fs~dg~~lav~w~ 544 (667)
.+-|+.|+|||...|..+.
T Consensus 269 pVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ceEEEEECCCCceeeccCC
Confidence 7889999999998877433
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-25 Score=240.62 Aligned_cols=244 Identities=22% Similarity=0.439 Sum_probs=205.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
...+..|.|+|..++|+|.+.++++||+|-.|+||+..+
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~----------------------------------------- 82 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT----------------------------------------- 82 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-----------------------------------------
Confidence 345678999999999999999999999999999999985
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
.+++.++.||-+.|..+.|++.- .++++|.|.||+||+..+++|+.++. |..+|.|.+|+| ....++++|.|.
T Consensus 83 ----rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 83 ----RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQ 157 (1202)
T ss_pred ----ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccc
Confidence 46688899999999999999988 99999999999999999999999885 999999999999 899999999999
Q ss_pred eEEEEecCCCe----------------------------EEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956 373 KVRIWGVCEKR----------------------------VVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (667)
Q Consensus 373 ~v~iwdl~~~~----------------------------~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~ 422 (667)
+||+||+..-+ +++ +.+|...|+-++|+|.-..|++|+.|..|++|.++.
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 99999985310 111 446778899999999999999999999999999875
Q ss_pred CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
.+. . .. .....|.+.|.++-|+|. ..++++.+.|+.|+|||+.+ .++.|+. .......++.+|..+++++
T Consensus 238 tKa-W---Ev-DtcrgH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAA 309 (1202)
T KOG0292|consen 238 TKA-W---EV-DTCRGHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAA 309 (1202)
T ss_pred ccc-e---ee-hhhhcccCCcceEEecCc-cceeEecCCCccEEEEecccccceeeeec--cCCeEEEEEecCCcceeee
Confidence 432 1 11 124456799999999997 47999999999999999874 4555554 5677888999999888777
Q ss_pred EeCCCcEEEEEcC
Q 005956 501 IGDDCRVYVWNYD 513 (667)
Q Consensus 501 gs~Dg~I~iWd~~ 513 (667)
|- |+-+.||.++
T Consensus 310 gH-DsGm~VFkle 321 (1202)
T KOG0292|consen 310 GH-DSGMIVFKLE 321 (1202)
T ss_pred ec-CCceEEEEEc
Confidence 65 4445556554
No 65
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.6e-24 Score=236.04 Aligned_cols=258 Identities=17% Similarity=0.208 Sum_probs=192.1
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
|-..|....+++|+..+++++.+.....|+...+.. .+.....+ .+. .
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G------------------------------~~~-~ 66 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-VLKHTDYG------------------------------KLA-S 66 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-Eeeccccc------------------------------cCC-C
Confidence 455677777888988889999999999998764211 00000000 000 1
Q ss_pred cceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCe-------EeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956 301 PLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
....+.+|.+.|++++|+| ++ +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+|..+++|++|+.
T Consensus 67 ~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 1234789999999999999 66 99999999999999997652 34444 499999999999944579999999
Q ss_pred CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
|++|+|||+.+++... +..|...|.+++|+|+|+.|++++.||.|++||+++++.... +..+. ...+..+.|.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~-----~~~~~~~~w~ 220 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHA-----SAKSQRCLWA 220 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCC-----CCcceEEEEc
Confidence 9999999999987664 556888999999999999999999999999999998765332 22221 1334577888
Q ss_pred cCCCeEEEEEe----CCCcEEEEECCcceeeEEe--CCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 450 RDESQRIMITS----EDSKLRILDGVDVIHKFKG--LPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 450 p~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
+++ ..+++++ .|+.|++||+++....+.. ......+....|++++++|++++ .|+.|++||+.++..
T Consensus 221 ~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 221 KRK-DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCC-CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 886 4555543 4789999998754332222 12334566677899999999887 599999999998764
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=229.81 Aligned_cols=251 Identities=20% Similarity=0.397 Sum_probs=210.9
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+.+|.+.|..+.|-++...|+|||.|..|++|++....
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k---------------------------------------- 208 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK---------------------------------------- 208 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch----------------------------------------
Confidence 4567899999999999998899999999999999987521
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
...+.++.|..+.|+++.|.+++ ++++++.|+.+++|++...+...++. |.+.|+++.|.. ....+++|+.|.+
T Consensus 209 ---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 209 ---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRT 284 (459)
T ss_pred ---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccch
Confidence 12466788888999999999988 99999999999999999999888874 999999999998 5556999999999
Q ss_pred EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
|++||+....+.........+..|+.+ +..+++|-.|++|++||.++...... +.+ ++.|+++..++++
T Consensus 285 iK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-v~~-------gg~vtSl~ls~~g- 353 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-VPL-------GGRVTSLDLSMDG- 353 (459)
T ss_pred hhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeE-eec-------CcceeeEeeccCC-
Confidence 999999998877766666667777766 56788899999999999998776543 222 3689999999996
Q ss_pred eEEEEEeCCCcEEEEECCc--ceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956 454 QRIMITSEDSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~--~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
..|++++.|.++.+.|++. ..+.+.. .......+.+.|||++.|+++||.||.|+||++.++++....
T Consensus 354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 7888889999999999874 4445543 223455889999999999999999999999999999875443
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=226.40 Aligned_cols=247 Identities=21% Similarity=0.347 Sum_probs=207.6
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
++.-.+..|.++.|-.||++||+|.+.|.|+|+|..+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~------------------------------------------- 99 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS------------------------------------------- 99 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-------------------------------------------
Confidence 3445677899999999999999999999999999653
Q ss_pred ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
...+..+.+|+.+|..+.|+|++ .|++|+.|+.+++||+.+......+ .|+++|.|.+|+|.++.++++|+.||+
T Consensus 100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred --HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 23467888999999999999977 8889999999999999998864344 599999999999988889999999999
Q ss_pred EEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 374 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 374 v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|++||++.. ..+...+|..+|..+.+-|.|..|++++. ..+++||+.++..... ....|...|||+.+..++
T Consensus 178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~------~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT------SMFNHNKTVTCLRLASDS 250 (487)
T ss_pred EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh------hhhcccceEEEEEeecCC
Confidence 999999987 66677889999999999999999998764 4899999995554332 122256889999999985
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
..|++++-|+.|++||+.+....... ...++|.+++.+|+++.++.|..||.+.+=+....+.
T Consensus 251 -~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 251 -TRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred -ceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 89999999999999997655444333 3678999999999999999999999888775554443
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=225.36 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=211.4
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
...+|.+-.++|+++.|.++++++++++.|+.+++|++..
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~---------------------------------------- 250 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS---------------------------------------- 250 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc----------------------------------------
Confidence 4567788899999999999999999999999999999986
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
.....+|.||++.|+++.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|+
T Consensus 251 -----~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~Dk 322 (459)
T KOG0288|consen 251 -----LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDK 322 (459)
T ss_pred -----hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeeccccc
Confidence 35578899999999999999877 6999999999999999999999998777777777775 46799999999
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+|++||+++..........+.|+++..+++|..+++.+.|.++.+.|+++...... +...+-+. ....+.++|+|++
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~-~sA~g~k~--asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT-FSAEGFKC--ASDWTRVVFSPDG 399 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE-eecccccc--ccccceeEECCCC
Confidence 99999999999998888888999999999999999999999999999998776543 22222222 2448999999996
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSG--SQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
.|+++|+.||.|+||++........+..... .|++++|+|.|.+|++++.++.+.+|
T Consensus 400 -~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 -SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 8999999999999999875554444432333 59999999999999999999999999
No 69
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.2e-24 Score=234.80 Aligned_cols=251 Identities=16% Similarity=0.214 Sum_probs=187.7
Q ss_pred eeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 217 ~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------- 112 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------- 112 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence 4679999999999999 88999999999999999997521100
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
....++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|+
T Consensus 113 -~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg 190 (493)
T PTZ00421 113 -NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDK 190 (493)
T ss_pred -ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCC
Confidence 0124577889999999999999974 89999999999999999999888875 889999999999 999999999999
Q ss_pred eEEEEecCCCeEEE-ecccCCc-eEEEEEeeCCCEEEEEe----cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 373 KVRIWGVCEKRVVD-WADVRDV-ISAICYIPDGKGFIVGS----ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 373 ~v~iwdl~~~~~~~-~~~~~~~-v~~v~~spdg~~l~~gs----~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
+|++||+++++.+. ...|.+. +..+.|.+++..+++++ .|+.|++||++............. ...+...
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~ 265 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-----SSALFIP 265 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-----CCceEEE
Confidence 99999999988664 4455443 45677888887777654 478999999987654433222221 2456667
Q ss_pred EEccCCCeEEEEEe-CCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 447 QFSRDESQRIMITS-EDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 447 ~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.|++++ .+|++++ .|+.|++||+.+....+.. .....++..++|.|.-..=+. .--..++|.+..
T Consensus 266 ~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei~r~~~l~~ 332 (493)
T PTZ00421 266 FFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEIARFYALTY 332 (493)
T ss_pred EEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceeeeEEEEecC
Confidence 789986 5666666 6999999998754333222 224556788888885322111 112346666643
No 70
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.8e-24 Score=199.68 Aligned_cols=205 Identities=22% Similarity=0.437 Sum_probs=171.9
Q ss_pred cceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCC---CeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 301 PLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC---NQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~---~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
.++.+.+|++.|..++|+|- | .|++|+.|+.|+||+... -.|...+ .|+..|..++|+| .+++|++|+.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 36778899999999999998 6 899999999999999984 3455555 3999999999999 9999999999999
Q ss_pred EEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 374 VRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 374 v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+.||.-..+.. -.+.+|...|.+++|+++|++||+++.|..+-||.+..... .. ...-...|...|..+.|+|
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-fe---c~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-FE---CIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-EE---EEeeeccccccccEEEEcC
Confidence 99998776543 34778999999999999999999999999999999984332 22 1111334467899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECC---c--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 451 DESQRIMITSEDSKLRILDGV---D--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~---~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.. .+|++++.|++|++|+-. + +.+++.+ |...|.+++|++.|..|+++++|++|+||..-
T Consensus 161 t~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 161 TE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred Cc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 73 699999999999999744 2 3445544 78899999999999999999999999999865
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.8e-24 Score=223.52 Aligned_cols=230 Identities=19% Similarity=0.330 Sum_probs=189.2
Q ss_pred eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
.++.||...|.+++++.+..++.++..+.|+||+..+.+|++++... ++.+..|-| .++++++|...|.+.+||+...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 45679999999999999996666666679999999999999999765 899999999 9999999999999999999998
Q ss_pred eEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc----eeeeEeecc-ccCcCCCCeEEEEEccCCCeEE
Q 005956 383 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHD-RKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 383 ~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~----~~~~~~~~~-~~~~~~~~I~~l~~sp~g~~~l 456 (667)
.++. ...|.+.|..++.+||++.+++|+.|.+|++||..-..- +...+.++. +...-...|.++.+|||| .+|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEE
Confidence 8765 567999999999999999999999999999999752111 000111111 111234789999999996 899
Q ss_pred EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccC
Q 005956 457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSE 535 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~d 535 (667)
+++=-|++++||-+.+....+...+|.-+|.++.+|||++.|+|||.|.+|+||-++-|.+.... .+...+.++.|-|+
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 99999999999998888777788889999999999999999999999999999999988875443 23334445566553
No 72
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=6e-24 Score=232.47 Aligned_cols=228 Identities=16% Similarity=0.210 Sum_probs=167.9
Q ss_pred CcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCe--------EeEEe-eCCCcEEEEEEeeCCCC-EEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ--------CLNVF-DHHNYVTCVQFNPIDDN-YFIS 367 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~--------~~~~~-~h~~~V~~l~f~p~d~~-~l~s 367 (667)
.++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaS 143 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCS 143 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEE
Confidence 346778899999999999996 4 99999999999999997642 22333 4889999999999 565 5678
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe----
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI---- 443 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I---- 443 (667)
++.|++|+|||+++++......+...|.+++|+|+|+.|++++.|+.|+|||++++..... + .+| .+.+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l--~gH----~g~~~s~~ 216 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-F--HIH----DGGKNTKN 216 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-E--ecc----cCCceeEE
Confidence 9999999999999988665445678899999999999999999999999999998765432 2 222 2322
Q ss_pred -EEEEEccCCCeEEEEEeCCC----cEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 444 -TGIQFSRDESQRIMITSEDS----KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 444 -~~l~~sp~g~~~l~~~s~dg----~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
....|++++ .+|++++.++ +|+|||++. .+..+....+.+.+......++|.++++|+.|+.|++|++..+
T Consensus 217 v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 217 IWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 223456775 6788877664 799999874 3444444334444444445667999999999999999999876
Q ss_pred Ccccc--ccccCccceeEEccCC
Q 005956 516 CFPSS--KQKNSVRSCEHFFSEG 536 (667)
Q Consensus 516 ~~~~~--~~~~~~~~~~~fs~dg 536 (667)
..... .........++|.|+-
T Consensus 296 ~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 296 SIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cEEeecccccCCCccceEEcccc
Confidence 43222 1222333445666643
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.7e-26 Score=211.90 Aligned_cols=245 Identities=18% Similarity=0.271 Sum_probs=207.4
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
-++.+|+++||...++.+...-|+++.|-+-+|||..++
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg----------------------------------------- 91 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG----------------------------------------- 91 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-----------------------------------------
Confidence 467899999999999999999999999999999998863
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..++.| .|..-|.+++|+.|. +|++|+.++.+||||++..+ +...+ +|...|..+.|.. .++.|++.+.|+
T Consensus 92 ----delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~ 165 (334)
T KOG0278|consen 92 ----DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDK 165 (334)
T ss_pred ----hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCC
Confidence 234444 488899999999988 99999999999999997654 33334 5999999999999 888999999999
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+||+||.+++..++....+..|+++.++++|++|.++ ..+.|.+||..+..+... .. ....|.+..++|+
T Consensus 166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs-~k-------~P~nV~SASL~P~- 235 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKS-YK-------MPCNVESASLHPK- 235 (334)
T ss_pred ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceee-cc-------CccccccccccCC-
Confidence 9999999999999999999999999999999776654 567899999988766432 22 2367999999998
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
...+++|+.|..++.||..+....-. ..+|.++|.++.|+|+|...++||+||+|+||....++.
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 48999999999999999775433322 245899999999999999999999999999999876653
No 74
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.1e-24 Score=232.98 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=180.8
Q ss_pred ceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
...+.+|.+.|++++|+|+ +.+||||+.||+|+|||+.+.....
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~----------------------------------- 111 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV----------------------------------- 111 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc-----------------------------------
Confidence 4568899999999999997 7899999999999999997521100
Q ss_pred cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
.....++..+.+|...|.+++|+|++ .|++++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|
T Consensus 112 --~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D 188 (568)
T PTZ00420 112 --KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVG 188 (568)
T ss_pred --cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecC
Confidence 00013456788999999999999988 56799999999999999998887777888999999999 99999999999
Q ss_pred CeEEEEecCCCeEEE-ecccCCceEEE-----EEeeCCCEEEEEecCC----cEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 372 GKVRIWGVCEKRVVD-WADVRDVISAI-----CYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 372 g~v~iwdl~~~~~~~-~~~~~~~v~~v-----~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
+.|+|||+++++.+. +..|.+.+.+. .|++++.+|++++.++ .|+|||++........+.+... .+
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~----~~ 264 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA----SA 264 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC----cc
Confidence 999999999988764 55666554332 3458889999887664 7999999964443333333221 23
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCC
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg 495 (667)
.+...-..++ +.++++|+.|+.|++|++... ...+....+..++.+++|.|..
T Consensus 265 ~L~p~~D~~t-g~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 265 PLIPHYDEST-GLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ceEEeeeCCC-CCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 3333333444 478899999999999998633 3333444466788899999974
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=217.66 Aligned_cols=290 Identities=19% Similarity=0.258 Sum_probs=228.5
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+..|.-+|++|+++||+++.++++.||+|.=|++.++....-....+ .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------ev 186 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------EV 186 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc----------------------------hh
Confidence 45677899999999999999999999999999999998754321100000 00
Q ss_pred ccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 295 FQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 295 ~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
......+...- .+|...|.+++.++|| +|++|+.|..|.||+.++.+.++.+. |.+.|.+++|-. ..+.+++++.|
T Consensus 187 ~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~D 265 (479)
T KOG0299|consen 187 LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASAD 265 (479)
T ss_pred hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecC
Confidence 00011222222 4899999999999999 99999999999999999999999975 999999999998 88899999999
Q ss_pred CeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 372 GKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 372 g~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
.+|++|++.....+ .+.+|++.|..+....-++.+-+|+.|.++++|++...... . +..+.+.+-|++|-.
T Consensus 266 rsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----i----frg~~~sidcv~~In 337 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----I----FRGGEGSIDCVAFIN 337 (479)
T ss_pred CceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee----e----eeCCCCCeeeEEEec
Confidence 99999999987766 48899999999999888889999999999999999543221 1 223357899999988
Q ss_pred CCCeEEEEEeCCCcEEEEECCcce--eeEEeC----------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 451 DESQRIMITSEDSKLRILDGVDVI--HKFKGL----------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~----------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
+ .++++|+.+|.|.+|++.+.. ...... .+...|++++..|...++|+|+.+|.|++|-+.++...
T Consensus 338 ~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 D--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred c--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 7 599999999999999976432 222221 11237899999999999999999999999999988432
Q ss_pred cc----ccccCccceeEEccCCcEEEEec
Q 005956 519 SS----KQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 519 ~~----~~~~~~~~~~~fs~dg~~lav~w 543 (667)
.. ......++.++|+++|..+.++-
T Consensus 416 i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 416 INLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cceeeecccccEEEEEEEccCCCEEEEec
Confidence 21 23445566788999999777763
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5e-26 Score=222.01 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=197.2
Q ss_pred ccccccccccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEeccc
Q 005956 203 KKKCMEFTALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK 281 (667)
Q Consensus 203 ~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (667)
.|-..-|.+.+..+ |.+|.+.|.|++=+|.. ..+|||+.||.|+|||+....+....-...|.+ -+ +.+..
T Consensus 48 tKleR~fakPFv~~-L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V-~G-----i~v~~- 119 (433)
T KOG0268|consen 48 TKLERVFAKPFVGS-LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLV-RG-----ICVTQ- 119 (433)
T ss_pred HHHHHHhhccchhh-ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCce-ee-----EEecc-
Confidence 33333445555544 58999999999999987 789999999999999998632211111111000 00 00000
Q ss_pred CCCCceeecC--CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEE
Q 005956 282 KSSHVPVVIP--DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF 357 (667)
Q Consensus 282 ~~~~~~~~~~--~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 357 (667)
.....+.-. -+.|.+...+++++.+. ..++.|.-+..+ .++|||.+ |-|||.....+++.+. ..+.|.++.|
T Consensus 120 -~~~~tvgdDKtvK~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 120 -TSFFTVGDDKTVKQWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred -cceEEecCCcceeeeeccCCcceeeecc-ccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEec
Confidence 000000000 01122222333333321 223333333222 44444432 4455555445555554 4567899999
Q ss_pred eeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 358 ~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
+|....+|++|..|+.|.+||++++.++...-....-+.+||+|.+-.+++|..|-.++.||++....+... ..
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------~~ 269 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------HK 269 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh------hc
Confidence 998888999999999999999999998876666677889999998888999999999999999976654432 34
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.|...|.++.|+|.| +.+++||.|.+|+||..+.....-.- ......|.++.||.|.+||++||+|+.|++|.....+
T Consensus 270 dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 456899999999997 89999999999999997643221111 1135679999999999999999999999999876544
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5.1e-24 Score=212.38 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=218.0
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.-.|+++...|....++|||.|..+.++|... ++.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s---------------------------------------------~q~ 253 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS---------------------------------------------NQI 253 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecch---------------------------------------------hhh
Confidence 35688999998878999999999999999875 456
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
+..|.||...|+.+.|+++. .+++++.|..|+||.+....+.... .|..+|+.+..+| ++.||++++.|++..+.|+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEc
Confidence 78899999999999999998 8999999999999999877665555 4999999999999 9999999999999999999
Q ss_pred CCCeEEEecccC---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 380 CEKRVVDWADVR---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 380 ~~~~~~~~~~~~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
+++..+....+. -.+++.+|+|||..|.+|+.||.++|||+....... +...|.++|..++|+.+| ++|
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENG-Y~L 404 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENG-YWL 404 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCc-eEE
Confidence 999877644443 458999999999999999999999999998766332 134467999999999996 999
Q ss_pred EEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC--cccccccc-CccceeE
Q 005956 457 MITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC--FPSSKQKN-SVRSCEH 531 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~--~~~~~~~~-~~~~~~~ 531 (667)
+++..|+.|++||+++.. .++... ....+.+++|.+.|.||+.++.|=.|++++-.+.. +....+.. ...+.+.
T Consensus 405 at~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~ 483 (506)
T KOG0289|consen 405 ATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR 483 (506)
T ss_pred EEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence 999999999999998543 444443 33479999999999999999877666666533321 11112222 3556678
Q ss_pred EccCCcEEEEecCC
Q 005956 532 FFSEGVSVAVQWPG 545 (667)
Q Consensus 532 fs~dg~~lav~w~~ 545 (667)
|..+.++++....+
T Consensus 484 Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 484 FGEHAQYLASTSMD 497 (506)
T ss_pred ecccceEEeeccch
Confidence 88888888775443
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-24 Score=226.38 Aligned_cols=240 Identities=22% Similarity=0.356 Sum_probs=202.2
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
+...|+++.|+++|.+||.|..+|.|.|||+.+ .+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------------------------------------------~k 250 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------------------------------------------QK 250 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhh---------------------------------------------cc
Confidence 488999999999999999999999999999985 34
Q ss_pred cceeeec-cccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE-e-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 301 PLQELHG-HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV-F-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 301 ~~~~l~g-h~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~-~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
.+..+.+ |...|-+++|. ...+.+|+.|+.|..+|+...+.... + .|...|..+.|++ +++++++|+.|+.+.||
T Consensus 251 ~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iw 328 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIW 328 (484)
T ss_pred ccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEec
Confidence 4566666 99999999999 44899999999999999988765444 4 4999999999999 99999999999999999
Q ss_pred ecCCCe-EEEecccCCceEEEEEee-CCCEEEEE--ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 378 GVCEKR-VVDWADVRDVISAICYIP-DGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 378 dl~~~~-~~~~~~~~~~v~~v~~sp-dg~~l~~g--s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
|..... ...+..|...|.+++|+| ....||+| +.|+.|++||..++..... ...+..|+++.|++...
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~--------vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS--------VDTGSQVCSLIWSKKYK 400 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc--------cccCCceeeEEEcCCCC
Confidence 996544 456889999999999999 55677875 4799999999997765432 12247899999999864
Q ss_pred eEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 454 QRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 454 ~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.++.+. ..++.|.||+...........+|...|..++++|||..|++|+.|.++++|++-+.
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 444443 45679999998866655555669999999999999999999999999999998764
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.5e-24 Score=210.50 Aligned_cols=261 Identities=21% Similarity=0.342 Sum_probs=211.3
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
-|.+-|.++... +++|+||+.||.++|||.. +
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------G 134 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------G 134 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC----------------------------------------------C
Confidence 489999999988 6799999999999999987 3
Q ss_pred CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCeEeEE-----eeCCCcEEEEEEeeCCCCEEEEEec
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNV-----FDHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
+....+.||.++|.+++|...+ .|++++.|.++++|.++.+..... -+|...|-++...+ ++..+++|+.
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~ 213 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSW 213 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecc
Confidence 6678889999999999986432 699999999999999887653221 26999999999999 9999999999
Q ss_pred CCeEEEEecCCC--------------------------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956 371 DGKVRIWGVCEK--------------------------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 371 Dg~v~iwdl~~~--------------------------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~ 424 (667)
|..|.||+.... .++.+.+|...|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 999999993210 1335678999999999987 6789999999999999999888
Q ss_pred ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCE-EEE
Q 005956 425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKH-IIS 500 (667)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~-l~s 500 (667)
...... .+..++++.++|. ..+|++|+.|..|++||.+. .+...+..+|...|.++.|+|...| |++
T Consensus 293 ~~~~~~--------~~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 293 LKSTLT--------TNKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ceeeee--------cCcceeEeecccc-cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 764321 2378999999997 58999999999999999774 2333344448889999999998765 789
Q ss_pred EeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCc
Q 005956 501 IGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 548 (667)
Q Consensus 501 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~ 548 (667)
|+.|+++++||+.....+...-. -.+.++|++.|+..+.
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~---------~h~DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIA---------GHNDKVLSVDWNEGGL 402 (423)
T ss_pred EecCCeEEEEEeccCCCcceeec---------cCCceEEEEeccCCce
Confidence 99999999999998764332111 1167889999987753
No 80
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.7e-24 Score=216.42 Aligned_cols=255 Identities=20% Similarity=0.326 Sum_probs=205.8
Q ss_pred cccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 220 AHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
-|.+.|+.+.+-|... .+||++..+.|.|||........... -+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-----------------------------------~~ 166 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-----------------------------------GE 166 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-----------------------------------cc
Confidence 5999999999999654 77788889999999998632111000 02
Q ss_pred CCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-------eEEe-eCCCcEEEEEEeeCCCCEEEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-------~~~~-~h~~~V~~l~f~p~d~~~l~sg 368 (667)
..|-..+.||...-.+|+|++.. .|++++.|++|++||+..... ...+ .|...|..++|++.+.++|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 35667889999988999999865 999999999999999964322 2333 4999999999999999999999
Q ss_pred ecCCeEEEEecCC--CeEE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 369 SIDGKVRIWGVCE--KRVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 369 s~Dg~v~iwdl~~--~~~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
+.|+.+.|||+++ .+.. ....|...|+|++|+| ++..||+|+.|++|.+||+++....... ...|...|.
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~------~e~H~dev~ 320 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT------FEGHEDEVF 320 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee------ccCCCcceE
Confidence 9999999999995 3333 3567889999999999 6678889999999999999987764432 233458999
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcc--------------eeeEEeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEE
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDV--------------IHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYV 509 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--------------~~~~~~~~~~~~v~~v~~spdg~~-l~sgs~Dg~I~i 509 (667)
.+.|+|.....|++++.|+.+.|||+.+. ...|.-.+|...|..++|+|+..+ |+++++|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999998889999999999999997532 123555568999999999999876 567889999999
Q ss_pred EEcCCC
Q 005956 510 WNYDEL 515 (667)
Q Consensus 510 Wd~~~~ 515 (667)
|.....
T Consensus 401 W~~s~~ 406 (422)
T KOG0264|consen 401 WQMAEN 406 (422)
T ss_pred eecccc
Confidence 998754
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=216.98 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=213.8
Q ss_pred ccccEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fspdg~~-Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
...+|.+++|||...| +|+++. -.+.||+..+ .
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------------------------------~ 58 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------------------------------R 58 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------------------------------h
Confidence 3467999999996653 444333 4688998775 2
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
....++......|.++.|-.|| +|++|...|.|+|+|+.+...++.+. |+.+|..+.|+|.++..|++|+.|+.+++|
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 3345556677889999999999 88888899999999977766666664 999999999999888899999999999999
Q ss_pred ecCCCeEE-EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 378 GVCEKRVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 378 dl~~~~~~-~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
|+.+..+. ...+|.+.|.|.+|+|- +..+++|+.||.|++||++...... .. ..|+.+|..+.+-|.| ..
T Consensus 139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v--~e-----lnhg~pVe~vl~lpsg-s~ 210 (487)
T KOG0310|consen 139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV--VE-----LNHGCPVESVLALPSG-SL 210 (487)
T ss_pred EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee--EE-----ecCCCceeeEEEcCCC-CE
Confidence 99998865 57899999999999995 5588899999999999999875222 22 2345899999999986 45
Q ss_pred EEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956 456 IMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 534 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~ 534 (667)
+++++ .+.|+|||+...-+.. ....|...|+|+++..++..|++|+-|+.|+|||+.+-+....-.-...+-.+..+|
T Consensus 211 iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 211 IASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP 289 (487)
T ss_pred EEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC
Confidence 55544 4689999987433333 333389999999999999999999999999999988776554444344455568999
Q ss_pred CCcEEEEecCCC
Q 005956 535 EGVSVAVQWPGI 546 (667)
Q Consensus 535 dg~~lav~w~~~ 546 (667)
|++.++++-...
T Consensus 290 dd~t~viGmsnG 301 (487)
T KOG0310|consen 290 DDQTVVIGMSNG 301 (487)
T ss_pred CCceEEEecccc
Confidence 999999976544
No 82
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.9e-24 Score=196.98 Aligned_cols=245 Identities=19% Similarity=0.278 Sum_probs=199.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
-.+.+++.+|...|..++.+.|...|++||.|..|.+||+.++
T Consensus 49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG------------------------------------- 91 (307)
T KOG0316|consen 49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG------------------------------------- 91 (307)
T ss_pred cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC-------------------------------------
Confidence 3456788999999999999999999999999999999999973
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~d~~~l~s 367 (667)
+.++.+.+|.+.|+.+.|+.+. .+++|+.|.++++||-++. ++++.+. ..+.|.++.. .+..|+.
T Consensus 92 --------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIva 160 (307)
T KOG0316|consen 92 --------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVA 160 (307)
T ss_pred --------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEe
Confidence 5578899999999999999888 9999999999999998764 6777775 7788999998 4688999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
|+.||++|.||++.++... .....+|++++|++||+..++++.++++++.|-.++++.... .+++. ...-...+
T Consensus 161 GS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY---kGhkn--~eykldc~ 234 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY---KGHKN--MEYKLDCC 234 (307)
T ss_pred eccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh---ccccc--ceeeeeee
Confidence 9999999999999998764 234567999999999999999999999999999998876542 12111 12233455
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS-QMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
++... .++++|++||.|++||+.+.....+...+... +.+++++|.-.-++++. ++.+..|--
T Consensus 235 l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 235 LNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred ecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 65553 79999999999999999876555555445555 78999999887777776 455666643
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.5e-24 Score=235.07 Aligned_cols=266 Identities=23% Similarity=0.374 Sum_probs=203.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+...|.++|+|+.|+|||+|||+|++|+.|.||+...... .-.|... ++.. .
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~-~~~fgs~------------------g~~~--------~ 115 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS-GTVFGST------------------GGAK--------N 115 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC-ccccccc------------------cccc--------c
Confidence 34567999999999999999999999999999999874100 0000000 0000 0
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
....+.+..+.+|...|.+++|+|++ +|++++.|++|.|||..+.++++++. |...|..+.|.| -|+||++-+.|++
T Consensus 116 vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 116 VESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRT 194 (942)
T ss_pred cceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCce
Confidence 01245678899999999999999999 99999999999999999999988885 999999999999 9999999999999
Q ss_pred EEEEecCCCeEEEec-------ccCCceEEEEEeeCCCEEEEEec----CCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 374 VRIWGVCEKRVVDWA-------DVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 374 v~iwdl~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
|++|.+.+-.+.+.. .....+..+.|+|||++|++... ...+.|.+-.+.+.. ..+ .+|.++
T Consensus 195 ikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~L----vGH~~p 267 (942)
T KOG0973|consen 195 LKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDL----VGHSAP 267 (942)
T ss_pred EEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee---eee----ecCCCc
Confidence 999997764444321 12345788999999999998542 235666665443332 222 334689
Q ss_pred eEEEEEccC--------CC--------eEEEEEeCCCcEEEEECCcceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 443 ITGIQFSRD--------ES--------QRIMITSEDSKLRILDGVDVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 443 I~~l~~sp~--------g~--------~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
++++.|+|. |. ..+++|+.|+.|.||........+..+ -....|..++|+|||-.|+++|.||
T Consensus 268 ~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 268 VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred eEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence 999999873 11 168899999999999976443333331 1367899999999999999999999
Q ss_pred cEEEEEcCCCC
Q 005956 506 RVYVWNYDELC 516 (667)
Q Consensus 506 ~I~iWd~~~~~ 516 (667)
+|.+..++..+
T Consensus 348 tV~~i~Fee~E 358 (942)
T KOG0973|consen 348 TVALIHFEEKE 358 (942)
T ss_pred eEEEEEcchHH
Confidence 99999997653
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=229.52 Aligned_cols=246 Identities=22% Similarity=0.384 Sum_probs=204.2
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
..+...+.+|.+.|++++|..-+.+|++|+.|.+++|||+.++
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg------------------------------------- 281 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG------------------------------------- 281 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-------------------------------------
Confidence 3344458999999999999887889999999999999998864
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
.+.+.+.||...|.++...+ ..+++|+.|.+|++|++.++.++.++. |..+|.++.. ++.++++|+.
T Consensus 282 --------~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~---~~~~lvsgs~ 349 (537)
T KOG0274|consen 282 --------ECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL---DEPLLVSGSY 349 (537)
T ss_pred --------cEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe---cCCEEEEEec
Confidence 55788899999999998653 378889999999999999999999998 9999999999 4789999999
Q ss_pred CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEE
Q 005956 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
|++|++||+.+++++. ..+|...|+++.+.+. ..++.|+.|++|++||+++. +.... ...|..-+..+.+
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t-------l~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT-------LQGHTSLVSSLLL 421 (537)
T ss_pred CceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh-------hcCCccccccccc
Confidence 9999999999999875 7789999999987665 89999999999999999987 44321 2233455666666
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.. ++|++++.|++|++||..+......... |...|..+++. ...+++++.||.+++||+.++....
T Consensus 422 ~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 422 RD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 53 5999999999999999875444443333 56778888775 4678899999999999999987543
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.1e-23 Score=196.32 Aligned_cols=290 Identities=14% Similarity=0.150 Sum_probs=226.6
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.++||..+++.+.|+.+| +|++|+.|.++.||-..+|+.+.++. |.+.|+|+...- +.+.+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 467999999999999999 99999999999999999999999985 999999999998 899999999999999999999
Q ss_pred CeEEEecccCCceEEEEEeeCCCEEEEEec-----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 382 KRVVDWADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
|+.+.......+|..+.|+++|+++++.+. .+.|.++|++........-...-....+...++.+.|.|-+ .+|
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEE
Confidence 999998889999999999999999888764 36799999984432111000000122234889999999996 899
Q ss_pred EEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccC
Q 005956 457 MITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 535 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~d 535 (667)
++|..||.|.+||..+..... ....|...|+.+.+++|..++++++.|.+-++||+.+...........+.++.+++|-
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 999999999999998754333 3345888999999999999999999999999999999988888888888888899997
Q ss_pred CcEEEEecCCCCcccccccCCCC--CCcCc--cC----cCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956 536 GVSVAVQWPGIGTEQKSLCSSSL--RDCSQ--KW----DNLETAPWIRDSERFSLGSWFSNDGPCRGS 595 (667)
Q Consensus 536 g~~lav~w~~~~~~~~~~~~~~~--~~~~~--~w----~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~ 595 (667)
-..+.+.-......+........ ..+|- +. .....+-....+.+|+|++...+.|...|-
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 77777655544333221111100 00000 00 112333445567899999999998887765
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.4e-24 Score=204.32 Aligned_cols=213 Identities=22% Similarity=0.356 Sum_probs=179.0
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC------------C------eEeEEe-eCCCcEEEEEEeeC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------N------QCLNVF-DHHNYVTCVQFNPI 360 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~------------~------~~~~~~-~h~~~V~~l~f~p~ 360 (667)
....+..|..++.+.+|++|| ++++|+.|..|+|.|++. + -.++++ .|.+.|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 345677899999999999999 999999999999999861 1 133443 5999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
....|++|+.|++|++||...-.. .+......+|.++.|+|.|.+|++|+...++++||+++.+.-.... ...
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan----Pd~ 258 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN----PDD 258 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----ccc
Confidence 899999999999999999976433 3455566789999999999999999999999999999876543311 234
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.|.+.|+++.+++.| ++.++++.||.|+|||.. +++..+........|.++.|+.+|+||++.+.|..|++|.+.++
T Consensus 259 qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 567899999999996 899999999999999965 56666666556778999999999999999999999999999988
Q ss_pred Cccc
Q 005956 516 CFPS 519 (667)
Q Consensus 516 ~~~~ 519 (667)
....
T Consensus 338 R~l~ 341 (430)
T KOG0640|consen 338 RMLK 341 (430)
T ss_pred ceEE
Confidence 6543
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=209.19 Aligned_cols=250 Identities=19% Similarity=0.293 Sum_probs=210.6
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..-.+.++++||.-.|+.+.|+|+...+++++.|-.|+||.+...
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~----------------------------------- 293 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS----------------------------------- 293 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----------------------------------
Confidence 344566788999999999999999999999999999999998751
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC---CcEEEEEEeeCCCCEE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYF 365 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~d~~~l 365 (667)
........|..+|+.+..+|.| +|++++.|++..+.|+.++.++....+. -.+++++|+| ||.+|
T Consensus 294 ----------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLif 362 (506)
T KOG0289|consen 294 ----------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIF 362 (506)
T ss_pred ----------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEE
Confidence 2344566899999999999999 9999999999999999999999888764 3589999999 99999
Q ss_pred EEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 366 ISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
.+|..|+.|+|||+..+..+ .+.+|.++|.+++|+.+|.++++++.|+.|++||++..+. ...+.+... ..+.
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~l~~~-----~~v~ 436 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQLDEK-----KEVN 436 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceeecccc-----ccce
Confidence 99999999999999987755 5788999999999999999999999999999999997653 333444332 4799
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
++.|.+.| .+|++++.|=+|++++-. ..........|.+..+.+.|....++++++|.|..++++.+
T Consensus 437 s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999996 888888888777777722 22222333347778899999999999999999999998864
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=186.57 Aligned_cols=249 Identities=20% Similarity=0.349 Sum_probs=199.0
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.-+.|++.|.|.+|||+|++||||+.|.+|++.-.....+.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~------------------------------------- 124 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN------------------------------------- 124 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-------------------------------------
Confidence 3444579999999999999999999999999999876642111
Q ss_pred ccccCCcceeeeccccceEEEEecCC----C-eEEEEe-CCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNS----N-YLLSCS-MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~----~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s 367 (667)
...+-.+|.-|.+.|.+++|..+ + .|++++ .|..|++-|..+++....+. |++.|.++--- ++-.|++
T Consensus 125 ---~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~s 199 (350)
T KOG0641|consen 125 ---ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFAS 199 (350)
T ss_pred ---ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEc
Confidence 11334567789999999999642 2 566554 47778888888998888775 88888876432 6889999
Q ss_pred EecCCeEEEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 368 GSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
|+.|.+|++||++-...+...+ ....|.+++..|.|+.|++|-.|..+.+||++.+..... ...|
T Consensus 200 gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~-------f~ph 272 (350)
T KOG0641|consen 200 GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR-------FHPH 272 (350)
T ss_pred cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee-------eCCC
Confidence 9999999999999877765332 125699999999999999999999999999998876543 3344
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-c---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV-D---VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
...|.++.|+|. ..++++++.|..|++-|+. + .........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 273 sadir~vrfsp~-a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 273 SADIRCVRFSPG-AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeEEEeCCC-ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 688999999997 5899999999999999976 2 22222333488889999999999889999999999999765
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.5e-24 Score=200.22 Aligned_cols=235 Identities=20% Similarity=0.302 Sum_probs=199.1
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
..+++|...|.+++|+.+| .|++|+.|+++.+|+++..+..... +|.+.|-.++|+|.....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5677999999999999999 9999999999999999987655444 48889999999998999999999999999999
Q ss_pred cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
++.+++.......+.-.-++|+|+|.+++++..|..|.+.|.++.+..... .....+..+.|+-++ .+++.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--------~~~~e~ne~~w~~~n-d~Ffl 164 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--------QFKFEVNEISWNNSN-DLFFL 164 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--------cccceeeeeeecCCC-CEEEE
Confidence 999998887777777777899999999999999999999999987664331 112457788888654 67777
Q ss_pred EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-ccccccCccceeEEccCCc
Q 005956 459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-SSKQKNSVRSCEHFFSEGV 537 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~fs~dg~ 537 (667)
+...|+|.|.....+........|.....++.|+|+|+|+|+|+.|..+-+||++..-+. ......-++..+.|+.||+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 788899999997766655555668899999999999999999999999999999987553 4456667778889999999
Q ss_pred EEEEecCCC
Q 005956 538 SVAVQWPGI 546 (667)
Q Consensus 538 ~lav~w~~~ 546 (667)
+||.++.+.
T Consensus 245 ~lASaSEDh 253 (313)
T KOG1407|consen 245 MLASASEDH 253 (313)
T ss_pred eeeccCccc
Confidence 999977654
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=6.9e-23 Score=223.44 Aligned_cols=241 Identities=18% Similarity=0.331 Sum_probs=203.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|...|++..|. +.++++++.|++|++|+..++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------------------------------------------- 238 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------------------------------------------- 238 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccc---------------------------------------------
Confidence 367789999998 458999999999999999863
Q ss_pred Cccee-eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQE-LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~-l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..+.. +.||.+.|+++++...+ +|++|+.|+++++||..+++|..++. |...|.++... +.++++|+.|.+|++
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKV 315 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---CceEeeccCCceEEE
Confidence 22344 88999999999998744 99999999999999999999999997 99999999884 578899999999999
Q ss_pred EecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 377 WGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 377 wdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
|++.++..+.... |.+.|.++.++ +..+++|+.||+|.+||+.+.++... ...|...|+++.+.+. ..
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-------l~gH~~~V~sl~~~~~--~~ 384 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-------LSGHTGRVYSLIVDSE--NR 384 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-------ecCCcceEEEEEecCc--ce
Confidence 9999999888666 99999999987 78999999999999999997766432 3335689999988774 58
Q ss_pred EEEEeCCCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc
Q 005956 456 IMITSEDSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK 523 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 523 (667)
+++|+.|+.|++||+.+. .+......|...+..+. ..+++|++++.|+.|++||.+++++......
T Consensus 385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred EEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence 999999999999998866 44444444777776555 4578999999999999999999987665444
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=217.77 Aligned_cols=250 Identities=20% Similarity=0.391 Sum_probs=204.6
Q ss_pred cccccEE---EEEEc-CCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 220 AHKGCIW---TLKFS-PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 220 ~H~~~I~---~v~fs-pdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.|...|. .+..+ |.++||+|||.||.|++|++......
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-------------------------------------- 60 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-------------------------------------- 60 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCC--------------------------------------
Confidence 3444555 44444 57889999999999999998752110
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC--eEeEEee-CCCcEEEEEE-eeCCCCEEEEEec
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--QCLNVFD-HHNYVTCVQF-NPIDDNYFISGSI 370 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f-~p~d~~~l~sgs~ 370 (667)
.+...+..++.|.+.|+++....++ .|+++|.|-+|++|+...+ -|..+++ |.++|.|++. -+ +..++++|+.
T Consensus 61 -~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGL 138 (735)
T KOG0308|consen 61 -PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGL 138 (735)
T ss_pred -cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCC
Confidence 0112367788999999999998888 9999999999999999877 5677775 9999999999 55 8889999999
Q ss_pred CCeEEEEecCCCeE--E---------Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 371 DGKVRIWGVCEKRV--V---------DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 371 Dg~v~iwdl~~~~~--~---------~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
|+.|.+||+.++.. + ... ++...|++++.++.|..|+.|+..+.+++||.++.+.... +. +
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---Lr----G 211 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---LR----G 211 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---ee----c
Confidence 99999999997722 1 122 6778899999999999999999999999999998876543 22 4
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
|...|..+..++|| ..+++++.||+|++||+....+......|...|.++..+|+-.++++|+.||.|+.=|+.+...
T Consensus 212 HTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 212 HTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred cccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 46889999999996 8999999999999999985544444444888899999999999999999999999999988543
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=200.86 Aligned_cols=255 Identities=18% Similarity=0.311 Sum_probs=214.4
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
...+.+++.||++.||.++.......+.|++.|.+.+||.+++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es------------------------------------- 179 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES------------------------------------- 179 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-------------------------------------
Confidence 3456778899999999999988888999999999999999997
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec------CC------------------------
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV------GC------------------------ 339 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~------~~------------------------ 339 (667)
+.++.++.||.+.|+++.|++.+ ++++++.|++..||.. ..
T Consensus 180 --------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 180 --------GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred --------ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 45678899999999999999999 8899999999999961 10
Q ss_pred ------C----eEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEE
Q 005956 340 ------N----QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI 407 (667)
Q Consensus 340 ------~----~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~ 407 (667)
+ .++..+ +|...|.+..|.. .++.+++++.|.+..+||++++.++. +.+|....+.++-+|..++++
T Consensus 252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred cccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence 0 012222 4888999999998 99999999999999999999999886 678889999999999999999
Q ss_pred EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE
Q 005956 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 487 (667)
Q Consensus 408 ~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 487 (667)
+.+.|.+.++||++..-.. ...+++ |...|+++.|..++ .+++|+.|.+|+|||+++....+.......+++
T Consensus 331 TsSrDtTFRLWDFReaI~s--V~VFQG----HtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQS--VAVFQG----HTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred EeccCceeEeccchhhcce--eeeecc----cccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 9999999999999843222 222333 45889999999984 899999999999999887655554444678899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 488 SASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.++++..++.|+.--++..|++||++......
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 99999888899999888999999999876543
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=209.89 Aligned_cols=235 Identities=25% Similarity=0.382 Sum_probs=196.6
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
++|...|.+++.|+||+|||||+.|..|.||+..+
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--------------------------------------------- 233 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--------------------------------------------- 233 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc---------------------------------------------
Confidence 38999999999999999999999999999999986
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-eeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
.++++.+.+|.+.|.+++|-... .|++++.|.+|++|+++....+.+ |+|.+.|..|.... -++.+.+|+.|+++++
T Consensus 234 ~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rl 312 (479)
T KOG0299|consen 234 LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRL 312 (479)
T ss_pred cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEE
Confidence 35677899999999999998766 999999999999999988776655 47999999998887 6777888889999999
Q ss_pred EecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc-----CCCCeEEEEEccC
Q 005956 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-----SGNKITGIQFSRD 451 (667)
Q Consensus 377 wdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~-----~~~~I~~l~~sp~ 451 (667)
|++.......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+.....-..|+-... ++..|++++..|.
T Consensus 313 wKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 313 WKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred EeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 99987777777888889999999754 68999999999999999887766543333322111 2248999999997
Q ss_pred CCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 452 ESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
..++++|+.+|.|++|-+.+. +..+....-.+.|++++|+++|++|++|
T Consensus 392 -sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 392 -SDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred -CceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 589999999999999987654 3344444467889999999999977766
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=6.1e-23 Score=226.22 Aligned_cols=288 Identities=20% Similarity=0.249 Sum_probs=218.0
Q ss_pred cccccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
.|...|.++..+|||..+|||| .||.++||+....... ...++.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------------------------------~~~~~~ 56 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------------------------------KEEKNE 56 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccch----------------------------------hhhhhc
Confidence 3556799999999999999999 8999999998741100 000011
Q ss_pred -cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC------------------CeEeEEe-eCCCcEEEEE
Q 005956 298 -EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC------------------NQCLNVF-DHHNYVTCVQ 356 (667)
Q Consensus 298 -~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~------------------~~~~~~~-~h~~~V~~l~ 356 (667)
-.+.+.....|.+.|+|+.|++|| +||+|+.|+.|.||.... .++...+ +|...|..+.
T Consensus 57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~ 136 (942)
T KOG0973|consen 57 NLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVN 136 (942)
T ss_pred ccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceec
Confidence 145678888999999999999999 999999999999998762 1234444 4999999999
Q ss_pred EeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 357 FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 357 f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
|+| ++.+|++++.|++|.||+..+.+.+. +.+|...|..+.|.|-|++||+-+.|++|++|++.+..... .+.-+-.
T Consensus 137 Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k-~It~pf~ 214 (942)
T KOG0973|consen 137 WSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK-SITKPFE 214 (942)
T ss_pred cCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE-eeccchh
Confidence 999 99999999999999999999987654 78899999999999999999999999999999976643322 1211111
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEe----CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----CC----------
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITS----EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GK---------- 496 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s----~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-----g~---------- 496 (667)
.......+..+.|+||| .+|++.. .-.++.|.+-..........+|..++.++.|+|. .+
T Consensus 215 ~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 12234568899999997 7777753 2347888875544444444558899999999982 11
Q ss_pred --EEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEEecC
Q 005956 497 --HIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 497 --~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav~w~ 544 (667)
.+|+||.|++|-||...........+.- ..+.-+.|+|||-.|-+++-
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 5789999999999999776654444332 33444689999976665543
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.9e-23 Score=193.02 Aligned_cols=249 Identities=22% Similarity=0.343 Sum_probs=199.8
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
-..|++.|..+...--|+.|||++.|++|+|+.+.+...
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------------------------- 45 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------------------------- 45 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------------------------------------
Confidence 357999999999988999999999999999999986211
Q ss_pred cCCcceeeeccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCC-CCEEEEEec
Q 005956 298 EESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPID-DNYFISGSI 370 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d-~~~l~sgs~ 370 (667)
.+++.+|.||.++|+.++|.. -| +|++++.||.|.||.-++++-.+.. .|...|++++|-|.+ +-.|++++.
T Consensus 46 -s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 46 -SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred -ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence 256789999999999999964 45 9999999999999999988655444 388999999999943 456889999
Q ss_pred CCeEEEEecCCC-eE---EEecccCCceEEEEEeeC---C-----------CEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 371 DGKVRIWGVCEK-RV---VDWADVRDVISAICYIPD---G-----------KGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 371 Dg~v~iwdl~~~-~~---~~~~~~~~~v~~v~~spd---g-----------~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
||.|.|.+.+.. .- .....|.-.|++++|.|. | +.|++|+.|..++||+........+.
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~--- 201 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER--- 201 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh---
Confidence 999999998765 21 124567888999999995 5 66999999999999999887554431
Q ss_pred ccccCcCCCCeEEEEEccCC---CeEEEEEeCCCcEEEEECCcceeeEE---eCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956 433 HDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDVIHKFK---GLPKSGSQMSASFTTTGKHIISIGDDCR 506 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g---~~~l~~~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~Dg~ 506 (667)
....|...|..++|.|.- ..+|++++.||++.||.........+ .......+..++||+.|..|+.++.|+.
T Consensus 202 --~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 202 --TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred --hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 134456899999999963 35899999999999997552211111 1224567899999999999999999999
Q ss_pred EEEEEcC
Q 005956 507 VYVWNYD 513 (667)
Q Consensus 507 I~iWd~~ 513 (667)
|.+|.-+
T Consensus 280 vtlwke~ 286 (299)
T KOG1332|consen 280 VTLWKEN 286 (299)
T ss_pred EEEEEeC
Confidence 9999754
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.6e-23 Score=222.83 Aligned_cols=231 Identities=21% Similarity=0.363 Sum_probs=183.1
Q ss_pred ceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCC--------------------------------C-------
Q 005956 302 LQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--------------------------------N------- 340 (667)
Q Consensus 302 ~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~--------------------------------~------- 340 (667)
.+.+. .|.+.|+++.|++|| +||+||.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34555 899999999999999 999999999999998754 0
Q ss_pred ---------------------eEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEE
Q 005956 341 ---------------------QCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 398 (667)
Q Consensus 341 ---------------------~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~ 398 (667)
++++.| +|.+.|..+.|+. .++|++++.|.+||+|++....++..+.|.+.|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 001112 3888999999996 7899999999999999999999999999999999999
Q ss_pred Eee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee--
Q 005956 399 YIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-- 475 (667)
Q Consensus 399 ~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-- 475 (667)
|+| |.++|++|+-||.|+||++...+.... ..+ ..-|++++|.|+| +..++|+.+|.+++|+......
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl-------~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDL-------RDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEee-hhh-------hhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE
Confidence 999 889999999999999999987765432 111 2679999999996 8999999999999999874332
Q ss_pred eEEeCCC------CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCccccc---cccCccceeEEccCCcEEEEec
Q 005956 476 KFKGLPK------SGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 476 ~~~~~~~------~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~fs~dg~~lav~w 543 (667)
.+....+ ...|+.+.|.|... -|++.+.|..|+|||..+....... +.........|+.||++++.+.
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 2222111 23799999987543 4777788999999999655443221 2233334568999999999876
No 97
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-21 Score=203.39 Aligned_cols=256 Identities=15% Similarity=0.276 Sum_probs=209.4
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+..+-+.--..+|++|+|+.+.+.||.+-.||.|.||++...
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-------------------------------------- 57 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-------------------------------------- 57 (691)
T ss_pred EEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------------------
Confidence 334444455788999999999999999999999999999862
Q ss_pred CcccccCCcceeeecc-ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956 293 EVFQIEESPLQELHGH-KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh-~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
.-....+.|+ ...|.+|+|++.++|++.+.+|+|.-||+.+++.+..+. ..+.|++++.+| .+..++.|+.
T Consensus 58 ------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~Igcd 130 (691)
T KOG2048|consen 58 ------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCD 130 (691)
T ss_pred ------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecC
Confidence 1123445555 468999999988899999999999999999999988886 677999999999 8899999999
Q ss_pred CCeEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEE
Q 005956 371 DGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l 446 (667)
||.+..++...+.+.. +....+.+.+++|+|++..++.|+.||.|++||...+..... ...+.+-.+....-|.++
T Consensus 131 dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 131 DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 9988888888887764 333458899999999999999999999999999987765542 222222222234568899
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.|-.++ .|++|..-|.|.+||.. +..+.+.. |...|.+++..+++.++++++.|+.|.-|...+...
T Consensus 211 ~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 211 LFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEeecC--cEEEecCCceEEEEcccCcchhhhhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 998875 89999999999999976 44555555 789999999999999999999999999999887744
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=189.47 Aligned_cols=202 Identities=17% Similarity=0.307 Sum_probs=170.1
Q ss_pred cccceEEEEecCCC--eEEEEeCCCcEEEEecCC-CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956 308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~ 383 (667)
-.+.+.+++|+++. .+++++.||+++|||+.. ..++..++ |...|.++.|++.....+++++.|++|++|+....+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35679999999876 899999999999999643 35677775 999999999999888899999999999999988766
Q ss_pred E-EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 384 ~-~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
. ..+.+|...|....|+| .++.+++++.||++++||++....... +..+ ...|.++.|+.-+.+.+++++.
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah------~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAH------NSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEec------cceeEeecccccCCcEEEecCC
Confidence 4 45888999999999999 678999999999999999987644322 3333 3689999999988889999999
Q ss_pred CCcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCC
Q 005956 462 DSKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 462 dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
|+.|++||+++. ...+...+|.-.|..+.|||.. ..||+++.|-+++|||...+.
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999998753 2344455689999999999975 578999999999999988654
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.3e-22 Score=213.48 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=212.8
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+|++.-+.|+|.|+|.+|+|++.||.|++|+..... .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------------------------------------------e 47 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------------------------------------------E 47 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------------------------------------------c
Confidence 799999999999999999999999999999987520 1
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
.| .++.-|...|.+++... ++|++|+.+++|.+|.+..++.-..+ ..+-++.+++|+. +|++++.|+.|-.|++.+
T Consensus 48 ~P-~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 48 EP-ETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLN 124 (933)
T ss_pred CC-chhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEe
Confidence 11 11222667788777543 38999999999999999988776554 4778999999999 999999999999999999
Q ss_pred cCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc-CCCCeEEEEEccCCCeEE
Q 005956 379 VCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT-SGNKITGIQFSRDESQRI 456 (667)
Q Consensus 379 l~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~-~~~~I~~l~~sp~g~~~l 456 (667)
+.+... ....+|..+|.++.|+|.+++||+.+.||.+++||+.++.+....-.+...... ....++.++|+|+| ..+
T Consensus 125 ~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~l 203 (933)
T KOG1274|consen 125 LDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-GTL 203 (933)
T ss_pred ccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-CeE
Confidence 987654 458899999999999999999999999999999999977664331111111111 13567889999996 577
Q ss_pred EEEeCCCcEEEEECCcceeeE--EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956 457 MITSEDSKLRILDGVDVIHKF--KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 534 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~ 534 (667)
++...|+.|++|+.......+ ....+...+..+.|+|+|+|||+++.||.|.|||+++... -.....+.+++|.|
T Consensus 204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p 280 (933)
T KOG1274|consen 204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKP 280 (933)
T ss_pred EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCC
Confidence 788889999999977544443 4444556699999999999999999999999999998332 22235567788888
Q ss_pred CCcEEEE
Q 005956 535 EGVSVAV 541 (667)
Q Consensus 535 dg~~lav 541 (667)
+...+.+
T Consensus 281 ~~n~it~ 287 (933)
T KOG1274|consen 281 NANAITL 287 (933)
T ss_pred CCCeeEE
Confidence 7654443
No 100
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=193.48 Aligned_cols=282 Identities=19% Similarity=0.267 Sum_probs=209.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
-.|+.|++.|.+||.|+.||.|.|||+.+. .+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---------------------------------------------~iar~ 60 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---------------------------------------------RIARM 60 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc---------------------------------------------chhhh
Confidence 789999999999999999999999999872 34567
Q ss_pred eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~ 383 (667)
+.+|..+|++++||++| .|+|++.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.++..-.+..-.+.++....
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 78999999999999999 99999999999999999999999999999999999999888887777766666666665433
Q ss_pred EE--Eecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 384 VV--DWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 384 ~~--~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
.. .... ......+..|.+.|+++++|+..|.+.+||..+.++... +... ....|..+.++..| .++++
T Consensus 141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas-~rit-----s~~~IK~I~~s~~g-~~lii 213 (405)
T KOG1273|consen 141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS-FRIT-----SVQAIKQIIVSRKG-RFLII 213 (405)
T ss_pred eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee-eeec-----hheeeeEEEEeccC-cEEEE
Confidence 22 1111 122233446889999999999999999999998766543 1111 12578889999885 89999
Q ss_pred EeCCCcEEEEECCcce-----------eeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCccccccccCc
Q 005956 459 TSEDSKLRILDGVDVI-----------HKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCFPSSKQKNSV 526 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~-----------~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~~~ 526 (667)
-+.|..||.|++.+.. ++++...+...-.+++||.+|.|++.++. -..+|||.-..|......+...-
T Consensus 214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence 9999999999976332 23333334455678999999999988874 35799999988876555443221
Q ss_pred cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCC
Q 005956 527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETA 571 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 571 (667)
...+-+.|.+..+.+..+.+ +...+|.+.+.+
T Consensus 294 ---------E~l~DV~whp~rp~i~si~s----g~v~iw~~~~~e 325 (405)
T KOG1273|consen 294 ---------EELLDVNWHPVRPIIASIAS----GVVYIWAVVQVE 325 (405)
T ss_pred ---------hheeecccccceeeeeeccC----CceEEEEeeccc
Confidence 12344566665554333322 334466655433
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=200.99 Aligned_cols=242 Identities=23% Similarity=0.383 Sum_probs=202.5
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
+--|.++|.|+.||.|...||+|+.||.|+||.+.++.
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~------------------------------------------ 296 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ------------------------------------------ 296 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecch------------------------------------------
Confidence 45689999999999999999999999999999999754
Q ss_pred cCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 298 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 298 ~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
++..|. .|+..|+++.|+.|+ .+++++.|.+++|.-+.+|++++.|. |..+|+...|.+ +|..+++++.||+|
T Consensus 297 ---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 297 ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV 372 (508)
T ss_pred ---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence 355555 899999999999999 99999999999999999999999996 999999999999 99999999999999
Q ss_pred EEEecCCCeEEE---ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 375 RIWGVCEKRVVD---WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 375 ~iwdl~~~~~~~---~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
++|+..+.++.. ..+...+|+++-.-| +...++++...+++.+.++.+.-.. . +.. -+..++...+.+.+|
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr-s---fsS-GkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR-S---FSS-GKREGGDFINAILSP 447 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe-e---ecc-CCccCCceEEEEecC
Confidence 999999988764 233456688888777 4578899999999999998753222 1 111 122346677788999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
.| .++.+.+.|+.++.|........-....|...+..++-+|..+.||+-++||.+++|.
T Consensus 448 kG-ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KG-EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CC-cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 86 8999999999999999764433333334888899999999999999999999999995
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=205.49 Aligned_cols=244 Identities=17% Similarity=0.213 Sum_probs=189.7
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE----eEEee--CCCcEEEEEEeeCCCCEEEEEec
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC----LNVFD--HHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~----~~~~~--h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
....-..+.+|+..|.++++.|.| +|++|+.|-+|++||+..... .+.+. ....|.+++|++ .+..|++.+.
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg 234 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSG 234 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEec
Confidence 344456788999999999999999 999999999999999975422 22222 456899999999 8888888888
Q ss_pred CCeEEEEecCCCeEEE-------------ecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeecccc
Q 005956 371 DGKVRIWGVCEKRVVD-------------WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~-------------~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~ 436 (667)
....+|+|-...+++. ..+|-..++|.||+|+. ..|++++.||++++||+...+.+.+.+.... .
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-A 313 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-C
Confidence 8999999987765443 34567789999999965 5788999999999999998776665544332 2
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
....-+++.++|+++| ..|++|..||.|.+|+... ....+ ..|.....|++++||+||++|++-|.|+++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 2334678999999997 7899999999999999642 22222 2333344899999999999999999999999999
Q ss_pred cCCCCccccc----cccCccceeEEccCCcEEEEecC
Q 005956 512 YDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 512 ~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+...+.+... ......+-++|||+.+++.++.+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 9987765442 22233445699999999988654
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=216.05 Aligned_cols=246 Identities=15% Similarity=0.265 Sum_probs=200.0
Q ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 225 I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
+..|+|+. +.++|||++..|.|.+||+... +..+.+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------~rnk~l~ 127 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------IRNKLLT 127 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------ccchhhh
Confidence 44566653 4679999999999999999841 0134567
Q ss_pred eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
.|..|+..|+++.|++.. +|++|+.||+|++||++..+...++. ....|..++|+|..+++|+++...|.+.+||++
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 788999999999999876 99999999999999999888777764 677999999999999999999999999999999
Q ss_pred CCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 381 EKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 381 ~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
.-.. .++..|.++|.|+.|+|++.+||+|+.|+.|+|||..+...... ..++. ..++.++.|-|....+|++
T Consensus 208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tInT-----iapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTINT-----IAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEEee-----cceeeeeeeccCccchhhh
Confidence 7553 35788999999999999999999999999999999987655433 22222 3789999999997777887
Q ss_pred Ee--CCCcEEEEECCcceeeE-EeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 459 TS--EDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT-TTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 459 ~s--~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~s-pdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
++ .|-.|+|||+++....+ ....|...++.++|. .|-..+.+++.||.|..-.+++...+
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTP 345 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccCh
Confidence 76 46789999998643322 233488899999994 35667899999999988777766543
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.7e-22 Score=191.52 Aligned_cols=285 Identities=17% Similarity=0.279 Sum_probs=213.3
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCc---cccCCCCeEEecc--cCCCCc
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGF---GSNAKEGKIKFGK--KKSSHV 286 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~ 286 (667)
-.+..++.||.|.|++++|++.+.+++|++.|++-+||...-.-.......+.+.. .....+......+ ......
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 34556788999999999999999999999999999999843110000000000000 0000000000000 000000
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~ 364 (667)
. -..|+..|.||.+.|.+..|-..+ .+++++.|.+..+||+++++.+..+. |....+.+.-+| ..++
T Consensus 260 t----------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 260 T----------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred e----------eeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 0 135788999999999999999888 99999999999999999999999884 999999999999 9999
Q ss_pred EEEEecCCeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 365 FISGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+++.+.|.++++||.+..- +..+.+|.+.|+++.|..+ ..+++|+.|.+|++||+++...+...+... .+
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd-------S~ 400 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD-------SP 400 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecC-------Cc
Confidence 9999999999999998532 3357899999999999876 478999999999999999888776655443 67
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ce---eeEEeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VI---HKFKGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~---~~~~~~~~~~~v~~v~~spdg--~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
++.++.+.. ...|+.--.+..|++||+.. .. .+....+|..-|.+++|..+- .-|++++-|..+.=|++..+.
T Consensus 401 ~NRvavs~g-~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 401 ANRVAVSKG-HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cceeEeecC-CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 889999886 36888888888999999762 11 111234578889999996543 458899999999999987653
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.7e-20 Score=194.07 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=182.6
Q ss_pred ceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.+.+..|.. +.+++|+|+|++| ++++.++.|++||+.++..
T Consensus 24 ~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------------------------------------- 65 (300)
T TIGR03866 24 TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------------------------------------- 65 (300)
T ss_pred EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------------------------------------
Confidence 344555544 6789999999976 5677899999999876321
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
...+..+.. +..++|+|++ .++ +++.|+.|++||+.+.+.+..+.+...+.+++|+| ++.++++++.+
T Consensus 66 --------~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~ 135 (300)
T TIGR03866 66 --------IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSET 135 (300)
T ss_pred --------EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecC
Confidence 222322322 4568899998 554 55678999999999988888887666678999999 99999988876
Q ss_pred C-eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeecccc-CcCCCCeEEEEE
Q 005956 372 G-KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQF 448 (667)
Q Consensus 372 g-~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I~~l~~ 448 (667)
+ .+.+||..+++..........+..++|+|+|+.+++++ .++.+++||+.+.+.... +...... .........+.|
T Consensus 136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK-ITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee-eeecccccccccCCccceEE
Confidence 5 46778998887765444445678899999999886654 589999999987754332 2221100 001123457889
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcccc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~~ 520 (667)
+|++...+++.+.++.|.+||+.+....... .+...+.+++|+|+|++|+++ +.++.|.|||+.+++....
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9997444455566778999998754332221 134578899999999999886 4689999999999875433
No 106
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=5e-22 Score=201.01 Aligned_cols=275 Identities=16% Similarity=0.270 Sum_probs=226.8
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+|..-|.++.+|...+++.|||. |.|+|||+.... ..
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg------------------------------------------~k 453 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG------------------------------------------NK 453 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC------------------------------------------CC
Confidence 69999999999999999999987 669999998520 11
Q ss_pred Ccceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 300 SPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 300 ~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
.++..+. .....|.++...||| .|++|+.-.+|.|||+.......... .....++++.+| |.++.+++..||.
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGn 532 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGN 532 (705)
T ss_pred CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCc
Confidence 2233332 235678899999999 99999999999999997655433322 234677899999 9999999999999
Q ss_pred EEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|.|||+....++. +.+|.+.+.||.+++||..|.+|+-|.+++.||++......+ ..+ ...|.++-++|.+
T Consensus 533 I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq-hdF-------~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 533 IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-HDF-------SSQIFSLGYCPTG 604 (705)
T ss_pred EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh-hhh-------hhhheecccCCCc
Confidence 9999999988775 888999999999999999999999999999999998765433 112 2679999999996
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEE
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 532 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~f 532 (667)
.+|++|-.++.+.|...... .+++.+.|...|.++.|.+.|+++++.+.|+.+..|...-+...........+.++..
T Consensus 605 -dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI 682 (705)
T KOG0639|consen 605 -DWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 682 (705)
T ss_pred -cceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeee
Confidence 89999999999999886543 4566666999999999999999999999999999999998877666666666777799
Q ss_pred ccCCcEEEEecCCCCc
Q 005956 533 FSEGVSVAVQWPGIGT 548 (667)
Q Consensus 533 s~dg~~lav~w~~~~~ 548 (667)
+.|.+++++.......
T Consensus 683 S~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 683 SFDDKYIVTGSGDKKA 698 (705)
T ss_pred ccCceEEEecCCCcce
Confidence 9999999998776543
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=8.2e-21 Score=203.18 Aligned_cols=284 Identities=17% Similarity=0.240 Sum_probs=220.1
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
.+..-.+..++++|...|+++.=+|--..+|.|..+|+|.|+++..
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~---------------------------------- 233 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF---------------------------------- 233 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc----------------------------------
Confidence 3444556678889999999999999888999999999999999985
Q ss_pred eecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCC
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDN 363 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~ 363 (667)
.+.+.+|+...+.|+.++|..|| .+++|+..|.+-+||++..+.+.... |.+.|..+.|.| ...
T Consensus 234 -----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~ep 301 (910)
T KOG1539|consen 234 -----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEP 301 (910)
T ss_pred -----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCc
Confidence 34567776556999999999999 88899999999999999877666553 666666666666 556
Q ss_pred EEEEEecCCeEEEEecCCCe----E-------------EE----------------------------------------
Q 005956 364 YFISGSIDGKVRIWGVCEKR----V-------------VD---------------------------------------- 386 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~----~-------------~~---------------------------------------- 386 (667)
.+++++.|..+++|=.+++. . +.
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 66666666655555211000 0 00
Q ss_pred --------------------------------------------------------ecc------cCCceEEEEEeeCCC
Q 005956 387 --------------------------------------------------------WAD------VRDVISAICYIPDGK 404 (667)
Q Consensus 387 --------------------------------------------------------~~~------~~~~v~~v~~spdg~ 404 (667)
... ....+++++.++.|+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 000 012378999999999
Q ss_pred EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------
Q 005956 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---------- 474 (667)
Q Consensus 405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------- 474 (667)
+.+.|+..|.|.+|++.++...... +....|..+|++++...-+ +.+++++.+|.+.+||..+..
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~ 536 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSS 536 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeeccc----ccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence 9999999999999999877554321 1234567999999998874 789999999999999854321
Q ss_pred ---------------------------------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956 475 ---------------------------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 475 ---------------------------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
+.|. +|...|++++|||||++|++++.|++|++||+.++...-..
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 1111 48899999999999999999999999999999999887777
Q ss_pred cccCccceeEEccCCcEEEEecC
Q 005956 522 QKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 522 ~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
....+...+.|+|+|.+||+.-.
T Consensus 615 ~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 615 LVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ecCCcceeeEECCCCCEEEEEEe
Confidence 77778888999999999999643
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.5e-20 Score=169.04 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=193.7
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
..+.+|.+++|+|.|.+.|.|+...+++|-...... +....+.....|+ .
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~------------------------~~r~~hea~~~pp------~ 79 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI------------------------DLRHAHEAAKQPP------S 79 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEcccccc------------------------CcccccccccCCC------e
Confidence 456789999999999999999999999987544210 0000000000000 0
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE-----Ee-eCCCcEEEEEEeeC---CCCEEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF-DHHNYVTCVQFNPI---DDNYFISGS 369 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~-----~~-~h~~~V~~l~f~p~---d~~~l~sgs 369 (667)
...+.-+.|.+.|.|.+|+|+| ++++|+.|++|++..+....+.. .| -|.+.|..++|... .+.+|++++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 0112234689999999999999 99999999999998765443322 22 38999999999751 245666655
Q ss_pred -cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEE
Q 005956 370 -IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 370 -~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l 446 (667)
.|..|++-|...++... +.+|.+.|.++ |+-+|-.+++|+.|.+|++||++-+..... .-.+++ .......|.++
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-~glessavaav 237 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-GGLESSAVAAV 237 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC-CCcccceeEEE
Confidence 46778888888887664 67788888776 456788999999999999999997655432 111111 11123679999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
+..|.| ++|++|-.|....+||++........++|...|.++.|+|...|+++++.|..|++-|++..
T Consensus 238 ~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 238 AVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 999996 89999999999999998855444455669999999999999999999999999999999865
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5e-21 Score=183.32 Aligned_cols=239 Identities=15% Similarity=0.254 Sum_probs=195.0
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.+..+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~------------------------------------- 104 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG------------------------------------- 104 (347)
T ss_pred cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-------------------------------------
Confidence 4444666789999999999999999999999999999999973
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.+..+..|.++|..+.|-+.. .|+|||.|++|+.||.+...++.++.....++++..- ..+++.+
T Consensus 105 ---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVa 172 (347)
T KOG0647|consen 105 ---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVA 172 (347)
T ss_pred ---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEE
Confidence 355667899999999998654 7999999999999999999999999999999999874 4688888
Q ss_pred ecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC--c---CC
Q 005956 369 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK--T---SG 440 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~--~---~~ 440 (667)
..+..|.+|+|+.+.... ....+-.+.|++..+|....+.|+-.|.+-+..+..... ...+.+.-|.. . .-
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCce
Confidence 999999999998765432 234566799999999999999999999999999987543 22333333221 1 13
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
..|++|+|+|. ...|++.+.||++.+||-....+......+..+|++.+|+.+|.++|-+
T Consensus 252 YaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 252 YAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEecceEeecc-cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 46889999997 5799999999999999966444444445589999999999999988755
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3e-21 Score=202.89 Aligned_cols=272 Identities=21% Similarity=0.343 Sum_probs=211.2
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
..+.+++.+|...|..+++.+.. .++++|.||+++||+-....
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~------------------------------------ 46 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ------------------------------------ 46 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcc------------------------------------
Confidence 34567899999999999987554 89999999999999875411
Q ss_pred CCcccccCCcceeeeccccceEE-EEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLD-LAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~-l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~s 367 (667)
....+.+.+|.+-|.. +++-+ ++ +|++|++|++|.+|...+..++..+. |...|.|++... ++. +++
T Consensus 47 -------~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iS 117 (745)
T KOG0301|consen 47 -------YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LIS 117 (745)
T ss_pred -------cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEe
Confidence 1234567788887777 88775 33 89999999999999999999998885 999999999775 554 999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
||.|.++++|-+..... .+.+|...|.++..-|.+ .+++|+.|.+|++|.-.+ .. .. ...|...|.+++
T Consensus 118 gSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l-~t------f~gHtD~VRgL~ 186 (745)
T KOG0301|consen 118 GSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LL-KT------FSGHTDCVRGLA 186 (745)
T ss_pred cccccceEEecchhhhc-ccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hh-hh------hccchhheeeeE
Confidence 99999999997643322 378899999999999987 899999999999998632 21 11 334568999999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCc
Q 005956 448 FSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSV 526 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 526 (667)
+-+++ .+++++.||.|+.|++. ..+.. .++|...+.+++...++..|+++++|++++||+..............+
T Consensus 187 vl~~~--~flScsNDg~Ir~w~~~ge~l~~--~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsi 262 (745)
T KOG0301|consen 187 VLDDS--HFLSCSNDGSIRLWDLDGEVLLE--MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSI 262 (745)
T ss_pred EecCC--CeEeecCCceEEEEeccCceeee--eeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccce
Confidence 99984 79999999999999983 44444 445899999999888899999999999999999883322222233344
Q ss_pred cceeEEccCCcEEEEecCC
Q 005956 527 RSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~ 545 (667)
+.+ .+-++|.+++-++.+
T Consensus 263 Wsa-~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 263 WSA-KVLLNGDIVVGGSDG 280 (745)
T ss_pred EEE-EEeeCCCEEEeccCc
Confidence 544 455556655554443
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.9e-21 Score=198.56 Aligned_cols=291 Identities=18% Similarity=0.348 Sum_probs=213.0
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce----------eeeeeCCCCC--ccccCCCCeEEe
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGG--FGSNAKEGKIKF 278 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~ 278 (667)
+..+...+++|++.|.+|...|.|.+||+|+.||+|+||.+.++.+ .++.|.+... +++.+....+.+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 3445567899999999999999999999999999999999998644 4666777663 223222222322
Q ss_pred cccCCC-Ccee--------ecCC--------Ccccc-----cCCcceeeeccccceEEEEecCCC-eEEEEeCC---CcE
Q 005956 279 GKKKSS-HVPV--------VIPD--------EVFQI-----EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTV 332 (667)
Q Consensus 279 ~~~~~~-~~~~--------~~~~--------~~~~~-----~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I 332 (667)
....-+ .... ..+. ..|.- ....++....|...|..+.|+..| +|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 221111 0000 0000 01111 122245566799999999999999 88877654 579
Q ss_pred EEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEe
Q 005956 333 RMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 333 ~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs 410 (667)
.|+++.....+.-|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++. +......|..++.+|.|..|++|+
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999998887776674 677899999999 7777777664 679999998877664 455566799999999999999999
Q ss_pred cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-------c----ceeeEEe
Q 005956 411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-------D----VIHKFKG 479 (667)
Q Consensus 411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-------~----~~~~~~~ 479 (667)
.|+.+..||+.-...+.+.+.+| ...+++++|++. -.++++++.||++.|+... + .+.++++
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H------~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLH------EKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhh------hhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 99999999998766555444333 478999999997 5789999999999998532 1 2233334
Q ss_pred CC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 480 LP--KSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 480 ~~--~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
+. +...|..+.|+|...+|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 21 22448899999999999999999999998
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.9e-21 Score=191.23 Aligned_cols=275 Identities=15% Similarity=0.190 Sum_probs=217.6
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
-.+.|++|.|+|..++|++||.||+++||.+.... ..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------------------------------N~ 248 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------------------------------NP 248 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------------------------------Ch
Confidence 35789999999999999999999999999997410 12
Q ss_pred cceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee---C-CCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---H-HNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~---h-~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.++.+.-...+|.+++|.|+| .+++++..+.++.||+.+.+..+.-. + ...+.....+| ++++|+..+..|.|
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I 327 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHI 327 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceE
Confidence 355565667899999999999 78999999999999999887765542 2 33567788889 99999999999999
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
.+....+++.+......+.|..++|+.||+.|++.+.+|.|.+||++.+..... +.-.+. -.-++++.++++ .
T Consensus 328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r-f~D~G~-----v~gts~~~S~ng-~ 400 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR-FVDDGS-----VHGTSLCISLNG-S 400 (514)
T ss_pred EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE-EeecCc-----cceeeeeecCCC-c
Confidence 999999999998888999999999999999999999999999999998855433 222221 234677888886 7
Q ss_pred EEEEEeCCCcEEEEECCccee------eEEeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCc----ccccc
Q 005956 455 RIMITSEDSKLRILDGVDVIH------KFKGLPKSGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCF----PSSKQ 522 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~~~~------~~~~~~~~~~v~~v~~spdg~~l~sgs~--Dg~I~iWd~~~~~~----~~~~~ 522 (667)
++++|+..|.|.|||...+.. ......-...|+++.|++|++.||.+|. +..+++-.+..... +....
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~ 480 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT 480 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC
Confidence 999999999999999653321 1111123567999999999999988874 57899988877543 22222
Q ss_pred ccCccceeEEccCCcEEEEecCCC
Q 005956 523 KNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 523 ~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.-.-+.|+.|+|.|.++|++-...
T Consensus 481 ~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 481 KVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred cccceEEEEecCCCceEEeecCCC
Confidence 334577899999999999975443
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=188.99 Aligned_cols=259 Identities=23% Similarity=0.286 Sum_probs=198.1
Q ss_pred ccccccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 219 QAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
-.|.+.|+.+.-++-| .+.|+-++.|.|+||++...-. .+...+.. +-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---~l~~~~~~--------------------------~~~ 198 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---ALSEPGLE--------------------------VKD 198 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---hhcCcccc--------------------------ccc
Confidence 3799999999988865 4777778999999999874210 00000000 000
Q ss_pred ccCCcceeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeE----EeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956 297 IEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLN----VFDHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~----~~~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
...+|+.++.+|...=.+|+||| .|.|++|..-+.|++|...++.-.. ...|+..|-.++|+|.....|++|+-
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 13578999999999999999999 4489999999999999998875332 22499999999999988899999999
Q ss_pred CCeEEEEecCCC---eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 371 DGKVRIWGVCEK---RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 371 Dg~v~iwdl~~~---~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
||+|+|||++.+ ..+....|...|+.|.|+..-.+||+|+.||+++|||++..+....... .+-|..+|+++.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~----fk~Hk~pItsie 354 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT----FKYHKAPITSIE 354 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee----EEeccCCeeEEE
Confidence 999999999998 4566688999999999999888999999999999999997765522222 233458999999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcc------------------eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEE
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDV------------------IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVY 508 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~------------------~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~ 508 (667)
|+|.....|++++.|.+|.|||+.-- .+.+-.+.....+..+.|++.- .+|++.+.|| +.
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fn 433 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FN 433 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-ee
Confidence 99988889999999999999996410 1112222234567778888753 4788888888 55
Q ss_pred EEE
Q 005956 509 VWN 511 (667)
Q Consensus 509 iWd 511 (667)
||.
T Consensus 434 Vfk 436 (440)
T KOG0302|consen 434 VFK 436 (440)
T ss_pred EEE
Confidence 553
No 114
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=193.89 Aligned_cols=253 Identities=20% Similarity=0.298 Sum_probs=185.5
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 313 (667)
Q Consensus 234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~ 313 (667)
|+|+|.|+.|..|.|||+.-.....-.+. +..... +.....++.-..-.+|+..|.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~----LGs~~s--------------------k~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVT----LGSKAS--------------------KKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceEEEeccCceeEEecccccccccccee----echhhh--------------------hhhhhhcccccccccchHHHH
Confidence 67999999999999999874221110000 000000 000001111223458999999
Q ss_pred EEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-EEEecc
Q 005956 314 DLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWAD 389 (667)
Q Consensus 314 ~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~ 389 (667)
+|+|+..- .|++||.|++|++||+.+++|..++. |...|.++.|+|....+|++|+.|++|.+.|.+... .-....
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence 99998765 89999999999999999999999998 888999999999999999999999999999998522 222334
Q ss_pred cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 390 VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 390 ~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
..+.|-.++|.|. ...+++++.||+++-+|++........+.. |...|.++++++.-+.++++++.|+.|++|
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA------HDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe------ccCCcceEEecCCCCcceeeccccceEEEE
Confidence 5677899999995 467888999999999999988654444333 458999999999888899999999999999
Q ss_pred ECCc--ceeeEEeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCC
Q 005956 469 DGVD--VIHKFKGLPKSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 469 d~~~--~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs~Dg~I~iWd~~~~~ 516 (667)
++.. ...........+...|+++.|+-.+ ++.|+..+.++|||+.+..
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9652 2111111112334567777777654 6677777889999998764
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.8e-21 Score=182.49 Aligned_cols=264 Identities=18% Similarity=0.312 Sum_probs=191.3
Q ss_pred ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 219 ~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
..|.|.|+++...+ .|+|+++|+.||.|.|||+++..-.. ..+.+. ...++
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-------------~s~li~------k~~c~--------- 91 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-------------ASGLIA------KHKCI--------- 91 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-------------hcccee------heeee---------
Confidence 36999999999987 68999999999999999998621000 000000 00000
Q ss_pred cCCcceeeeccccceEEEEecCC--CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCC--CCEEEEEecCCe
Q 005956 298 EESPLQELHGHKGDVLDLAWSNS--NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPID--DNYFISGSIDGK 373 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~--~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d--~~~l~sgs~Dg~ 373 (667)
-....-.+|.-.|.++.|-|- |++.+++.|.+++|||..+-+....|...+.|+.-+++|.. ..++++|..|-.
T Consensus 92 --v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 92 --VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred --ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCc
Confidence 001223478999999999883 39999999999999999999999999999999999999843 346788888899
Q ss_pred EEEEecCCCeEEE-ecccCCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeecc--------ccCcCCCCe
Q 005956 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHD--------RKKTSGNKI 443 (667)
Q Consensus 374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~--------~~~~~~~~I 443 (667)
|++.|+..|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++...-....+..+. ....|.+++
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 9999999998765 7789999999999997765 56799999999999986422222222222 234577899
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeC---CCCC------CeEE-----EEEcC--CCCEEEEEeCCCcE
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSG------SQMS-----ASFTT--TGKHIISIGDDCRV 507 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~------~v~~-----v~~sp--dg~~l~sgs~Dg~I 507 (667)
.+++|+.++ .++++.+.|..+++|+..+....++.. .|.. .+.+ +.+-| ++-+|++..+...|
T Consensus 250 ngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 250 NGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV 328 (397)
T ss_pred eeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEE
Confidence 999999996 899999999999999965432222110 0100 0111 11223 33456677777889
Q ss_pred EEEEcC
Q 005956 508 YVWNYD 513 (667)
Q Consensus 508 ~iWd~~ 513 (667)
+.|+..
T Consensus 329 r~l~~h 334 (397)
T KOG4283|consen 329 RRLSTH 334 (397)
T ss_pred Eeeecc
Confidence 999987
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-22 Score=213.85 Aligned_cols=238 Identities=24% Similarity=0.411 Sum_probs=207.4
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
-.+++.+|...|.++..-..++.+++|+.|..+-+|.+..
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---------------------------------------- 59 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---------------------------------------- 59 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccC----------------------------------------
Confidence 3466778999999999988899999999999999998874
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
..++..|.+|..+|.++.|++.. +|++|+.+|+|++||++.++.++++ +|...+..++|+| -+.++++|+.|
T Consensus 60 -----p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStd 133 (825)
T KOG0267|consen 60 -----PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTD 133 (825)
T ss_pred -----CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEecccccc
Confidence 23355689999999999999988 8899999999999999999888776 5999999999999 89999999999
Q ss_pred CeEEEEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 372 GKVRIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 372 g~v~iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+.+++||++. |....+..|...+..+.|+|+|++++.|+.|..+++||+..+++..+ .+.|.+++..+.|+|
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------f~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------FKSHEGKVQSLEFHP 206 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc-------cccccccccccccCc
Confidence 9999999995 44555667888899999999999999999999999999988776543 445678999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
.. .+++.|+.|++|++||+.+....-.+......|.+..|+|+++.+++|..+.
T Consensus 207 ~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 207 LE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred hh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 85 7888999999999999997776666666788999999999999999886554
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=5.3e-21 Score=201.01 Aligned_cols=234 Identities=26% Similarity=0.448 Sum_probs=194.1
Q ss_pred eeeccccccEEE-EEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 216 QEIQAHKGCIWT-LKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 216 ~~l~~H~~~I~~-v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
+.+.+|.+-|.+ ++|-+ ++..|++|+.|.+|.+|....
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~---------------------------------------- 90 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ---------------------------------------- 90 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCC----------------------------------------
Confidence 456789999988 88885 555799999999999999885
Q ss_pred cccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..|+.+|.||...|.++....++.+++||.|.++++|... ++...+ +|+..|+++++.| .+ .+++|+.|.
T Consensus 91 -----~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDK 161 (745)
T KOG0301|consen 91 -----AEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADK 161 (745)
T ss_pred -----CCchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcc
Confidence 5678999999999999998888899999999999999875 333334 5999999999998 44 999999999
Q ss_pred eEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+|++|.- ++. ..+.+|.+.|..+++-+++ .|++++.||.|++|++.+. ...+ ++ .|..-|.++....+
T Consensus 162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge-~l~~---~~----ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE-VLLE---MH----GHTNFVYSISMALS 230 (745)
T ss_pred eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc-eeee---ee----ccceEEEEEEecCC
Confidence 9999976 444 4577899999999998864 6888999999999999543 3332 23 34578999996555
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
+ ..++++++|++++||+...+.+.+.. ....|.++.+-++|. |++|+.||.||||...
T Consensus 231 ~-~~Ivs~gEDrtlriW~~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 231 D-GLIVSTGEDRTLRIWKKDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred C-CeEEEecCCceEEEeecCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 3 69999999999999998888777776 566899999988886 6677789999999876
No 118
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-19 Score=175.07 Aligned_cols=276 Identities=12% Similarity=0.151 Sum_probs=203.4
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec--CCeEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI--DGKVR 375 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~--Dg~v~ 375 (667)
++.+.|..-.+.|+++.|+++| +|++++.|.+++|||..+++.++++. +...|..+.|.. ..+.++.++. |.+||
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 3445566667889999999999 89999999999999999999999987 556788889988 6777777776 88999
Q ss_pred EEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 376 IWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 376 iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
..++.+.+.++ +.+|...|+.++.+|-+..+++++.|++|++||++..+.+.. +.. ..-..++|.|.| -
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~--------~~~pi~AfDp~G-L 153 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL--------SGRPIAAFDPEG-L 153 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-Eec--------CCCcceeECCCC-c
Confidence 99999999876 778999999999999999999999999999999997665432 111 223467899997 6
Q ss_pred EEEEEeCCCcEEEEECCc----ceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccC----
Q 005956 455 RIMITSEDSKLRILDGVD----VIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS---- 525 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~----~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~---- 525 (667)
++|++...+.|++||++. +...+... ......+.+.|||||++|+.+...+.+++.|.-+|..........
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 666666666999999873 34444443 346678999999999999999999999999998887654432221
Q ss_pred ccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956 526 VRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGP 591 (667)
Q Consensus 526 ~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~ 591 (667)
..-...|.|||+++..+..+..-.+..+.. ... ...|.. +.........|.|....++.++
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t--g~~-v~~~~~--~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLET--GKK-VAVLRG--PNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCC--CcE-eeEecC--CCCCCccccccCCceeeeeecC
Confidence 223568999999998876654332222211 110 112211 1122344556777666666543
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.8e-20 Score=179.00 Aligned_cols=233 Identities=19% Similarity=0.283 Sum_probs=188.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|.++|.+++|.++ ..+++|+-||.|+.+|+.++
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--------------------------------------------- 85 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--------------------------------------------- 85 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCC---------------------------------------------
Confidence 49999999999974 57999999999999999863
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
....+..|...|.+|.+++-. .+++||.|++|++||.....+...+.....|.|+.. .++.|+.|+.|..|.+||
T Consensus 86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEE
Confidence 234556799999999999754 999999999999999998777777777779999988 578999999999999999
Q ss_pred cCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccCc-----CCCCeEEEEEc
Q 005956 379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKKT-----SGNKITGIQFS 449 (667)
Q Consensus 379 l~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~-----~~~~I~~l~~s 449 (667)
+++..... -...+..+.|+++.|++..+++++-+|.+.+=.+...... .....+..|... ...+|++|+|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99866432 4456678999999999999999999999877555544221 113333322222 23579999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
|- ...+++|+.||.|.+||+....+..+.+.....|.+++|+.+|..||+++.
T Consensus 242 p~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 98 579999999999999999876666666556678999999999999999873
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=190.56 Aligned_cols=237 Identities=17% Similarity=0.233 Sum_probs=189.4
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
-.++|.|++-+|+|.||+.|+..|.|.+|.+.+ +.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss---------------------------------------------G~ 114 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS---------------------------------------------GI 114 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc---------------------------------------------cc
Confidence 367899999999999999999999999999997 34
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC---------CCeEeEEee-CCCcEEEEEEeeC-CCCEEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---------CNQCLNVFD-HHNYVTCVQFNPI-DDNYFISG 368 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~---------~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sg 368 (667)
.+..+.+|-..|++|.|+.|+ +|+|||.||.|.+|.+. +-+++..|. |.-+|+.+...+. ...+++++
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 567778999999999999999 99999999999999863 235666675 8889999998872 35689999
Q ss_pred ecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
+.|.++++||+..+.++........+++++.+|-++.+.+|+.+|.|.+.++....... ..+..=.+
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-------------~~v~~k~~ 261 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-------------AGVNQKGR 261 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc-------------cccccccc
Confidence 99999999999999999888888999999999999999999999999988876433211 11111112
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCcc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVR 527 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~ 527 (667)
++.+ +....+.++.....|++++++.||..|++|+.||.|.|||+...++..... .+.++
T Consensus 262 ~~~~-------------------t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 262 HEEN-------------------TQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred cccc-------------------ceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 2221 223344554344699999999999999999999999999999887755543 56666
Q ss_pred ceeEEcc
Q 005956 528 SCEHFFS 534 (667)
Q Consensus 528 ~~~~fs~ 534 (667)
+.+.+.|
T Consensus 323 tnL~i~~ 329 (476)
T KOG0646|consen 323 TNLQINP 329 (476)
T ss_pred ceeEeec
Confidence 6666644
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=2.3e-21 Score=196.19 Aligned_cols=238 Identities=22% Similarity=0.368 Sum_probs=202.5
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
-..-|.++.+.|||+.|++||+-.++.|||+..... .
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-------------------------------------------r 500 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-------------------------------------------R 500 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCc-------------------------------------------c
Confidence 456799999999999999999999999999985211 1
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
...++....-...+|+.+||. ..++|..||.|.|||+.+...++.|+ |.+.+.||..++ +|..|.+|+.|.+||.||
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehh
Confidence 112233334457788999998 88899999999999999999999996 999999999999 999999999999999999
Q ss_pred cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
+++++.....+....|.++-+.|.+.++++|-.++.+.+........ .++.. |...|.++.|.+-| +++++
T Consensus 580 lregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yqlhl------heScVLSlKFa~cG-kwfvS 650 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQLHL------HESCVLSLKFAYCG-KWFVS 650 (705)
T ss_pred hhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--eeecc------cccEEEEEEecccC-ceeee
Confidence 99998887778888999999999999999999999998887764332 12222 24789999999996 89999
Q ss_pred EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
++.|+-+..|.+.-....|+.. ....|.++.+|.|.+||+||+.|....||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999987666677664 6789999999999999999999988888865
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=195.68 Aligned_cols=268 Identities=19% Similarity=0.331 Sum_probs=193.7
Q ss_pred EEEEcCC---CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 227 TLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 227 ~v~fspd---g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
+..|++. ...||.+.+||.|.++|.... .+.+++..+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~---------------------------------------~fr~ee~~lk 94 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSI---------------------------------------VFRLEERQLK 94 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhh---------------------------------------hcchhhhhhc
Confidence 3667652 348999999999999998751 1222344466
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE---eeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV---FDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~---~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
....|...|.++.|.|.. .|++++.|.++++||+.+.++... ++|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 777899999999999955 999999999999999999988765 4799999999999999999999999999999998
Q ss_pred CCCeEE----------------------------EecccCCceEE---EEEeeCCCEEEEEec-CCcEEEEEecCCccee
Q 005956 380 CEKRVV----------------------------DWADVRDVISA---ICYIPDGKGFIVGSI-TGTCHFYKASGNDLKL 427 (667)
Q Consensus 380 ~~~~~~----------------------------~~~~~~~~v~~---v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~ 427 (667)
+....- .+..+...|.. +.+..|...||+++. |+.|++||++.+....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 653210 11112233444 555578888988776 9999999999876654
Q ss_pred eeEeeccc-cCcC---CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956 428 EKVDFHDR-KKTS---GNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHII 499 (667)
Q Consensus 428 ~~~~~~~~-~~~~---~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~ 499 (667)
.+-..... ...+ ...++++.....| .+|++.+.|+.|++|++.. ....+.+......-..-..+|++.+|+
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 42221111 1111 2456777777776 6777777799999999873 344444443444444556799999999
Q ss_pred EEeCCCcEEEEEcCCCCccccc--cccCccceeEEcc
Q 005956 500 SIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFS 534 (667)
Q Consensus 500 sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~ 534 (667)
+|+.|...++|.+...+..... .+...+.++.|.|
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 9999999999999998765432 2233344445554
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=7e-21 Score=191.91 Aligned_cols=218 Identities=18% Similarity=0.320 Sum_probs=177.0
Q ss_pred ceeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.-.|.+|++.=+.+.|++... +|++|+.|++|.+||+.......
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------------------------------- 214 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------------------------------- 214 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----------------------------------
Confidence 347889999888999998644 89999999999999998532100
Q ss_pred cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC--CeEeEEe-eCCCcEEEEEEeeCCCCEEEEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~--~~~~~~~-~h~~~V~~l~f~p~d~~~l~sg 368 (667)
..-.+...+.+|...|.+++|++-. .|++++.|+.+.|||+++ .++.... .|...|.|++|+|.++.+|++|
T Consensus 215 ---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~ 291 (422)
T KOG0264|consen 215 ---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG 291 (422)
T ss_pred ---ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence 0124577889999999999999866 899999999999999995 4444444 4999999999999999999999
Q ss_pred ecCCeEEEEecCCCe--EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCccee----------eeEeeccc
Q 005956 369 SIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKL----------EKVDFHDR 435 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~----------~~~~~~~~ 435 (667)
+.|++|++||++... +..+..|.+.|..|.|+|. ...|++++.|+.+.+||+..-.... +.+-.
T Consensus 292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~--- 368 (422)
T KOG0264|consen 292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI--- 368 (422)
T ss_pred cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE---
Confidence 999999999999744 5568899999999999995 4678888999999999997433221 11111
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 473 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~ 473 (667)
...|...|..+.|+|..+..|++.+.|+.+.||.....
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 23456889999999999899999999999999997643
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=174.59 Aligned_cols=251 Identities=23% Similarity=0.354 Sum_probs=187.0
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
..+|.+-|+++.|.+-|+.+|||+.|++|+|||......
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~----------------------------------------- 47 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG----------------------------------------- 47 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------------------------
Confidence 358999999999999999999999999999999753111
Q ss_pred cCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCC-------e--EeEEe-eCCCcEEEEEEeeC-CCC
Q 005956 298 EESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCN-------Q--CLNVF-DHHNYVTCVQFNPI-DDN 363 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~-------~--~~~~~-~h~~~V~~l~f~p~-d~~ 363 (667)
........+.|.+.|..+.|.+. | .+++++.|+++.||.=... + ...++ .....|+.+.|.|. -|-
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence 12334567889999999999653 3 8999999999999964211 1 12222 36678999999983 356
Q ss_pred EEEEEecCCeEEEEecCCCe-EEE-------------ecccCCceEEEEEeeC---CCEEEEEecC-----CcEEEEEec
Q 005956 364 YFISGSIDGKVRIWGVCEKR-VVD-------------WADVRDVISAICYIPD---GKGFIVGSIT-----GTCHFYKAS 421 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~-~~~-------------~~~~~~~v~~v~~spd---g~~l~~gs~d-----g~i~l~d~~ 421 (667)
.+++++.||.+|||+...-- +.. ...+.....|+.|+|. ...|++|+.+ +.+.||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 78999999999999875421 111 1124556788999874 4678888876 588899887
Q ss_pred CCcceeeeEeeccccCcCCCCeEEEEEccCCC---eEEEEEeCCCcEEEEECCcc-------------------eeeEE-
Q 005956 422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV-------------------IHKFK- 478 (667)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~---~~l~~~s~dg~I~iwd~~~~-------------------~~~~~- 478 (667)
.+..+...+. ....+..+|+.++|.|+-+ ..|++++.|| |+||.+... +.+..
T Consensus 208 e~~rKw~kva---~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 208 ENGRKWLKVA---ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred CCcceeeeeh---hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 6654433221 1235679999999999732 5788999999 999986520 11111
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 479 GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 479 ~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
...|.+.|..+.|+-.|..|++.|.||.|++|...
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 33588899999999999999999999999999754
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1.4e-19 Score=183.76 Aligned_cols=308 Identities=22% Similarity=0.302 Sum_probs=222.7
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC--C-ccccCCCCeEEecccCCCCceeecC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG--G-FGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.+...+|.+.|.+++.-.+|.+| +|+.|+.|..||-. .......-.|+. . .......+.+.+.. ..+....
T Consensus 280 ~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGT-trN~iL~--- 353 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGT-TRNFILQ--- 353 (626)
T ss_pred EeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEee-ccceEEE---
Confidence 34444999999999999999755 59999999999932 111110001110 0 00011111121111 1111111
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
-.+......+..+|....+.++.+|+. .|++++.|+.+++|+ ..++.......+++.|+.|+| .+ .++.|..
T Consensus 354 ---Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~ 426 (626)
T KOG2106|consen 354 ---GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTA 426 (626)
T ss_pred ---eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeec
Confidence 012233455667999999999999988 999999999999999 667777777889999999999 77 9999999
Q ss_pred CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
.|...+.|.++...+.......+++++.|+|+|.+||+|+.|+.|++|.+..+.......... +..+|+.+.|++
T Consensus 427 ~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-----~gs~ithLDwS~ 501 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-----SGSPITHLDWSS 501 (626)
T ss_pred cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-----cCceeEEeeecC
Confidence 999999999998888766668999999999999999999999999999998877766533222 238999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcce----------------eeEE--eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 451 DESQRIMITSEDSKLRILDGVDVI----------------HKFK--GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~----------------~~~~--~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
|+ +++.+-+.|-.|..|....+. .-|. +..+...+..++-+.+.+.+|+|.+.|+|++|..
T Consensus 502 Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 502 DS-QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred CC-ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 95 999999999999999533211 1111 1234555667777888999999999999999998
Q ss_pred CCCCccccc----cccCccceeEEccCCcEEEE
Q 005956 513 DELCFPSSK----QKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 513 ~~~~~~~~~----~~~~~~~~~~fs~dg~~lav 541 (667)
.-....... .......+++|..+...+..
T Consensus 581 Pc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 581 PCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred ccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence 765544432 33455667788886665554
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.7e-20 Score=187.31 Aligned_cols=294 Identities=15% Similarity=0.205 Sum_probs=221.4
Q ss_pred ccccccccceeeccccccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956 207 MEFTALYTSQEIQAHKGCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (667)
Q Consensus 207 ~~~~~~~~~~~l~~H~~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (667)
+.+..+...++++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---------------------------- 222 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---------------------------- 222 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------------------------
Confidence 4455667778889999999999999965 4899999999999999953111
Q ss_pred CceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEee
Q 005956 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNP 359 (667)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p 359 (667)
....+..+..|..+|.+|.|+|.+ .+++.|+||+|++-|++++..-..+. ....+..++|+.
T Consensus 223 -------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 223 -------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA 289 (498)
T ss_pred -------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence 123356678999999999999987 99999999999999999775444333 344677888888
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee-eEeeccc
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDR 435 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~ 435 (667)
+...++.+..=|.+.+||++++.. ..+.-|...|+.++++|- ..+|++++.|++.+|||++....... .+.
T Consensus 290 -e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls---- 364 (498)
T KOG4328|consen 290 -ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS---- 364 (498)
T ss_pred -CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee----
Confidence 566666666667999999998664 346677789999999994 56789999999999999986554432 122
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----c--ceeeEEe-CC--CCCCeEEEEEcCCCCEEEEEeCCCc
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV----D--VIHKFKG-LP--KSGSQMSASFTTTGKHIISIGDDCR 506 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~----~--~~~~~~~-~~--~~~~v~~v~~spdg~~l~sgs~Dg~ 506 (667)
...|...|.+..|+|.++. |++++.|..|+|||.. . ....+.- .. ..-....+.|.|+..+|++|-.-..
T Consensus 365 t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~ 443 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP 443 (498)
T ss_pred cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc
Confidence 2345688999999999866 9999999999999973 1 1111111 00 1123456789999999999999999
Q ss_pred EEEEEcCCCCcccccc---ccCccceeEEccCCcEEEEecCCCC
Q 005956 507 VYVWNYDELCFPSSKQ---KNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 507 I~iWd~~~~~~~~~~~---~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
|-|+|-+.++.....+ ...+.....|+|-+..++.+.+..+
T Consensus 444 IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 444 IDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred eeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 9999999887544433 2345566789998886776655443
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=4e-20 Score=194.34 Aligned_cols=372 Identities=18% Similarity=0.211 Sum_probs=252.2
Q ss_pred ccccceeeccccccEEEEEEcCCCC---EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGR---YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~---~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
.+....++.||++.|.+++|..-+. +|||+|.|..||||.+.-..... ... ....... ..+ ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~---------~e~~~t~---~~~-~~ 245 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNE---------REDSLTT---LSN-LP 245 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-ccc---------ccccccc---ccC-Cc
Confidence 4456678999999999999987554 99999999999999986422110 000 0000000 000 00
Q ss_pred eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE--eE--Eee----CCCcEEEEEEe
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LN--VFD----HHNYVTCVQFN 358 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~--~~--~~~----h~~~V~~l~f~ 358 (667)
+.......+..-..-..+.||++-|.++.|+|.+ .|+++++|+++.+|.-.+..- +. .++ .....+...|+
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 0000000000001113356999999999999999 999999999999998765522 22 222 23468899999
Q ss_pred eCCCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc
Q 005956 359 PIDDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (667)
Q Consensus 359 p~d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~ 434 (667)
| +++.+++-+.-|-.++|-..... .....+|-+.|+.++|+|.|.+|++.+.|-+-|+|-.-..+.. +.-..
T Consensus 326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~---wHEia 401 (764)
T KOG1063|consen 326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE---WHEIA 401 (764)
T ss_pred C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc---eeeec
Confidence 9 89999999999999999833322 1235678899999999999999999999999999976633332 33334
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-----------------------------------e-----
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-----------------------------------I----- 474 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-----------------------------------~----- 474 (667)
+...|+..++|++|-+. ...+++|.....+|+|+..+. .
T Consensus 402 RPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred ccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 45667899999999985 367888888888999953110 0
Q ss_pred ---e---------------------------------eEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcC
Q 005956 475 ---H---------------------------------KFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYD 513 (667)
Q Consensus 475 ---~---------------------------------~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~ 513 (667)
. .-+..+|...|.+++.+|+|++||+++.. ..|++|+..
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA 560 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc
Confidence 0 00223588889999999999999999754 469999998
Q ss_pred CCCccc-cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCC-CcCccCcCCCCCCcccCCCcccCCCCCCCCCC
Q 005956 514 ELCFPS-SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR-DCSQKWDNLETAPWIRDSERFSLGSWFSNDGP 591 (667)
Q Consensus 514 ~~~~~~-~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~ 591 (667)
+-.... ...+...++.+.|||||++|+....+..-.+.-....-.+ ..| ....++....-...++|++.||+.++
T Consensus 561 ~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 561 NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred chhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEec
Confidence 765543 3445566777899999999998776655443221111111 111 22345555666778999999999887
Q ss_pred CCCC-CCCCCCcCC
Q 005956 592 CRGS-ATWPAEKLP 604 (667)
Q Consensus 592 ~~g~-~~w~~~~~~ 604 (667)
..-+ ..|.+++.+
T Consensus 638 RDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 638 RDKKVKVWEEPDLR 651 (764)
T ss_pred CCceEEEEeccCch
Confidence 5444 568777653
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=4.1e-19 Score=183.66 Aligned_cols=257 Identities=12% Similarity=0.096 Sum_probs=183.4
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceE
Q 005956 234 GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVL 313 (667)
Q Consensus 234 g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~ 313 (667)
+..++|++.|+.|++||+.++ +.+..+.+|.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~---------------------------------------------~~~~~~~~~~~-~~ 34 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATL---------------------------------------------EVTRTFPVGQR-PR 34 (300)
T ss_pred CcEEEEecCCCEEEEEECCCC---------------------------------------------ceEEEEECCCC-CC
Confidence 357899999999999998753 23445554443 67
Q ss_pred EEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCCeEEEEecCCCeEEEeccc
Q 005956 314 DLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 314 ~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg~v~iwdl~~~~~~~~~~~ 390 (667)
+++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.++.|++||+.+.+.+.....
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 89999998 55 567789999999999998887776444567889999 7776654 45689999999999877665554
Q ss_pred CCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 391 RDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
...+.+++|+|+|+.++++..++ .+.+||..+...... .. . ...+..++|+|++..+++++..++.|++||
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~-~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VL-V------DQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EE-c------CCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 55678899999999999988775 467789876544321 11 1 134577999999743445555799999999
Q ss_pred CCcce--eeEEeCC-----CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEE
Q 005956 470 GVDVI--HKFKGLP-----KSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 470 ~~~~~--~~~~~~~-----~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav 541 (667)
+.+.. ..+.... .......++|+|++++++++ +.++.|.+||..+++.............+.|+|+|..|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 87543 2222211 11223568899999986554 4567899999988765433222334557799999999887
Q ss_pred ecCC
Q 005956 542 QWPG 545 (667)
Q Consensus 542 ~w~~ 545 (667)
+...
T Consensus 266 ~~~~ 269 (300)
T TIGR03866 266 TNGV 269 (300)
T ss_pred EcCC
Confidence 6543
No 129
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.1e-20 Score=192.89 Aligned_cols=227 Identities=15% Similarity=0.216 Sum_probs=186.4
Q ss_pred ccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
...|+++.|+++| +|+.|..+|.|.|||+.+.+.+..+. |...|-+++|+ +..+.+|+.|+.|..+|++..+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence 7899999999999 99999999999999999888887774 78899999995 689999999999999999986643
Q ss_pred -E-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--C
Q 005956 386 -D-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--E 461 (667)
Q Consensus 386 -~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~ 461 (667)
. ...|...|..+.|++|++++|+|+.|+.+.|||......... ...|...|..++|+|--..+||+|+ .
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~-------~~~H~aAVKA~awcP~q~~lLAsGGGs~ 366 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT-------FTEHTAAVKALAWCPWQSGLLATGGGSA 366 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE-------EeccceeeeEeeeCCCccCceEEcCCCc
Confidence 3 677899999999999999999999999999999955444332 2334589999999998777888874 6
Q ss_pred CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEccCCcE
Q 005956 462 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVS 538 (667)
Q Consensus 462 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~ 538 (667)
|++|++||.......-.. .....|.++.|++..+-|+++. .++.|.||++.+.+..... .+...+-+++.+|||..
T Consensus 367 D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 367 DRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET 445 (484)
T ss_pred ccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE
Confidence 999999998855443333 3578899999999997777653 4678999999987654433 34455777899999999
Q ss_pred EEEecCCC
Q 005956 539 VAVQWPGI 546 (667)
Q Consensus 539 lav~w~~~ 546 (667)
++++..+.
T Consensus 446 i~t~a~DE 453 (484)
T KOG0305|consen 446 IVTGAADE 453 (484)
T ss_pred EEEecccC
Confidence 99876554
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=5.2e-19 Score=179.66 Aligned_cols=265 Identities=18% Similarity=0.345 Sum_probs=212.1
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------ceeeeeeCCCCCccccCCCCeEEecccC
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------------AASCKSFTDDGGFGSNAKEGKIKFGKKK 282 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (667)
.+.-...|....|+|.+.-|+.....|.+..|+...+ ...|+.|.+++..+.....|.+.+|.+.
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 3456678999999997665555555688999988753 3567889999999999999999988875
Q ss_pred CCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC------------------------
Q 005956 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG------------------------ 338 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~------------------------ 338 (667)
.... .+....|.+.|.+|+...+|.|++|+.|..|..||-.
T Consensus 276 ~~~~---------------~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 276 TNRI---------------SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred CceE---------------EeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 4332 3333489999999999999999999999999999821
Q ss_pred -----------------CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee
Q 005956 339 -----------------CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP 401 (667)
Q Consensus 339 -----------------~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp 401 (667)
++-.+.++.|....+.++.+| +.+.+++++.|+.+++|+ ..++.-.....+++.|+.|+|
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp 417 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP 417 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC
Confidence 111222345888899999999 899999999999999999 666666666778899999999
Q ss_pred CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE--e
Q 005956 402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK--G 479 (667)
Q Consensus 402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~--~ 479 (667)
.| .+|+|+..|...+.|..+..+... ... +.+++.+.|+|+| .+|++++.|+.|+||-+...-.++. +
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~~~lv~~--~~d------~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTETQDLVTI--HTD------NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred cc-eEEEeeccceEEEEecccceeEEE--Eec------CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 99 999999999999999988554432 111 4899999999996 8999999999999998653222222 2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 480 LPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 480 ~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
..+..+|+.+.||+|++||.+-+.|-.|..|
T Consensus 488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 2245899999999999999999999999999
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.1e-20 Score=184.92 Aligned_cols=232 Identities=17% Similarity=0.246 Sum_probs=185.4
Q ss_pred cceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
.+..+.||.+.|.+++=+|.. .+++|+.||.|+|||+....++..+. |.+.|..|.+.. ..+++++.|.+|+.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW 134 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence 466789999999999999987 89999999999999999999999997 899999999964 678889999999999
Q ss_pred ecCCC---------------------------eEEE-e-----------cccCCceEEEEEeeCC-CEEEEEecCCcEEE
Q 005956 378 GVCEK---------------------------RVVD-W-----------ADVRDVISAICYIPDG-KGFIVGSITGTCHF 417 (667)
Q Consensus 378 dl~~~---------------------------~~~~-~-----------~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l 417 (667)
-+... +.+. | .-..+.|.++.|+|.. ..|+++..|+.|.+
T Consensus 135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 74321 1111 1 1112447888899965 45666779999999
Q ss_pred EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCC
Q 005956 418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTT 494 (667)
Q Consensus 418 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spd 494 (667)
||++........+ + ...-+.|+|+|. ...++++++|..++.||++. ....+++ |...|++++|||.
T Consensus 215 yD~R~~~Pl~KVi-~-------~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt 283 (433)
T KOG0268|consen 215 YDLRQASPLKKVI-L-------TMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT 283 (433)
T ss_pred EecccCCccceee-e-------eccccceecCcc-ccceeeccccccceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence 9999887654422 1 134578999995 57889999999999999874 4555555 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEEecCCC
Q 005956 495 GKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 495 g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav~w~~~ 546 (667)
|+-+++||.|.+|+||.++.+...-..+++ ..+.|+.|+.|++++..++...
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~ 337 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG 337 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence 999999999999999999998776666554 3466789999999888765544
No 132
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.4e-20 Score=196.32 Aligned_cols=248 Identities=14% Similarity=0.265 Sum_probs=201.3
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
...++.|.+.|+.+....+|+.|++++.|-+|++|+...+.
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------------------------------------- 106 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------------------------------------- 106 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---------------------------------------
Confidence 45678999999999999999999999999999999998532
Q ss_pred ccccCCcceeeeccccceEEEEe-cCCC-eEEEEeCCCcEEEEecCCCe--EeEEe----------eCCCcEEEEEEeeC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAW-SNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF----------DHHNYVTCVQFNPI 360 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~-s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~----------~h~~~V~~l~f~p~ 360 (667)
.-+..++..|.+.|.|+++ .++. .+++||.|+.|.|||+.++. .+..+ ++...|++++.++
T Consensus 107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~- 181 (735)
T KOG0308|consen 107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ- 181 (735)
T ss_pred ----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-
Confidence 1235677889999999999 6666 89999999999999999772 22222 3677899999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
.+..|++|+..+.+++||.++++ ++++.+|.+.|.++-.++||+.+++++.||+|++||+........ +..+
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T-~~vH------ 254 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT-YIVH------ 254 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee-EEec------
Confidence 88999999999999999999865 567889999999999999999999999999999999987666544 2233
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
...|.+++.+|+ -.++++|+.|+.|..=|+++............+|..+..+...+-+-++..|+.|+-|...-
T Consensus 255 ~e~VWaL~~~~s-f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 255 KEGVWALQSSPS-FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cCceEEEeeCCC-cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 356999999987 58999999999999999886433222223456666666664444446667788898887653
No 133
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=177.00 Aligned_cols=287 Identities=18% Similarity=0.249 Sum_probs=211.0
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+..+.+.+|.+.|+++.||.++++||+||.|..++||++...-..
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------- 91 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------- 91 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-----------------------------------
Confidence 345567799999999999999999999999999999999752110
Q ss_pred CcccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC---cEEEEEEeeCCCCEEEE
Q 005956 293 EVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 293 ~~~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~---~V~~l~f~p~d~~~l~s 367 (667)
-..+|+.... .|...|.||+|.-.+ +|++|+.+++|.+.|+++.+.+.++.|.. .|+.+..+| .++.|++
T Consensus 92 ----k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~ 166 (609)
T KOG4227|consen 92 ----KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIV 166 (609)
T ss_pred ----cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEE
Confidence 0124555444 356899999998877 99999999999999999999999998776 999999999 6899999
Q ss_pred EecCCeEEEEecCCCe----EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 368 GSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
.+.++.|.+||++..+ ++...........+-|+|- ..+|++.+..|-+-+||.+.......+.............
T Consensus 167 ~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~ 246 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTE 246 (609)
T ss_pred EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchh
Confidence 9999999999998755 4445566677888999994 5678889999999999998766544322211111111233
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
..++.|+|+| +.+++--....-.+||... ....++.. .+...+.+++|--| ..|++|+.+-.|+||.+...
T Consensus 247 ~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 247 WMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCC
Confidence 4678999997 5666666666667788653 33333332 23346778888644 45999999999999998642
Q ss_pred Cc------------------------cccccccCccceeEEccCCcEEEE
Q 005956 516 CF------------------------PSSKQKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 516 ~~------------------------~~~~~~~~~~~~~~fs~dg~~lav 541 (667)
.. .....+..+...+.|+|...+|+.
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence 11 111234556666788887766654
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.6e-20 Score=170.39 Aligned_cols=235 Identities=20% Similarity=0.229 Sum_probs=182.3
Q ss_pred eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEe-eCCCcEEEEEEe-eCCCCEEEEEecCCeEEEEec
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF-DHHNYVTCVQFN-PIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~-~h~~~V~~l~f~-p~d~~~l~sgs~Dg~v~iwdl 379 (667)
..|.+.|.++...--| +|+||+.|++|+|+.++.+.. +..+ +|.++|+.++|. |.-|.+|++++.||+|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4788999888877777 999999999999999986543 3333 599999999995 567899999999999999998
Q ss_pred CCCeEE---EecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEEccC--
Q 005956 380 CEKRVV---DWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRD-- 451 (667)
Q Consensus 380 ~~~~~~---~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~sp~-- 451 (667)
.+++-. ....|...|++++|-|. |-.|++++.||.|.+.+.+.. ......+ ...|.-.|++++|.|.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-----~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-----VFAHEIGVNSVSWAPASA 162 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh-----hhccccccceeeecCcCC
Confidence 887533 46678899999999995 567899999999999999876 2222211 3345577999999886
Q ss_pred -C----------CeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEc
Q 005956 452 -E----------SQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYVWNY 512 (667)
Q Consensus 452 -g----------~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~iWd~ 512 (667)
| .+.|++|+.|+.|+||+... ..+.+.+ |...|..++|.|.- .+||+++.||+|.||..
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 2 15699999999999999764 2333444 89999999999975 57999999999999998
Q ss_pred CCCCcccccc----ccCccceeEEccCCcEEEEecCCCC
Q 005956 513 DELCFPSSKQ----KNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 513 ~~~~~~~~~~----~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
.....+.... -..+.-.+.|+..|.+||++.....
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 7443333321 1223334689999999999766543
No 135
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=172.11 Aligned_cols=277 Identities=19% Similarity=0.246 Sum_probs=193.2
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
+..++||.+.|++++|+.|| .|+|++.|++|+||+++.. ++++.--.-+..+.+.|.|....++++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 56789999999999999999 9999999999999999753 23332223346788999994444555666667899
Q ss_pred EEecCCCe-------EEEec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 376 IWGVCEKR-------VVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 376 iwdl~~~~-------~~~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+|-+...+ .+.+. .|.-.+..+-.-.++.+|++++.|..|.+|++++..+. .+. +....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~--~id------tnq~~ 230 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ--SID------TNQSS 230 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee--eec------ccccc
Confidence 99775432 11111 23344555666667899999999999999999943332 222 22245
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEEC--------CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDG--------VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
-+..+.+|+| +++++++.--.|++|.. ....+.+...+|...|..++|+++...+++.|.||+++|||.+-
T Consensus 231 n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 5678899996 89999999999999973 24456667777999999999999999999999999999999753
Q ss_pred CC----ccc-------ccccc-CccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC-CCCCcccCCCccc
Q 005956 515 LC----FPS-------SKQKN-SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL-ETAPWIRDSERFS 581 (667)
Q Consensus 515 ~~----~~~-------~~~~~-~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~fS 581 (667)
.. -+. ..+.. ...--+..+|.|.+||++...+ +..+++.... ..+.. ..+........|+
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~---l~~~~se~g~----~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD---LKVFASEDGK----DYPELEDIHSTTISSISYS 382 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc---eEEEEcccCc----cchhHHHhhcCceeeEEec
Confidence 21 111 11111 1122478999999999987654 3333332211 01111 1234456778899
Q ss_pred CCCCCCCCCCCCC
Q 005956 582 LGSWFSNDGPCRG 594 (667)
Q Consensus 582 ~~~~~~~~g~~~g 594 (667)
++++|.+.-.+|-
T Consensus 383 ~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 383 SDGKYIATCGDRY 395 (420)
T ss_pred CCCcEEeeeccee
Confidence 9999998766554
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=192.85 Aligned_cols=229 Identities=17% Similarity=0.297 Sum_probs=174.0
Q ss_pred ceEEEEecCC--CeEEEEeCCCcEEEEecCC---CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 311 DVLDLAWSNS--NYLLSCSMDKTVRMWQVGC---NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 311 ~V~~l~~s~~--~~l~s~s~Dg~I~iWd~~~---~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
.+.++.|+.- ++|++++..|.|.+||+.. .+.+..|. |...++++.|++...++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4567788742 3999999999999999987 55556665 9999999999998999999999999999999998775
Q ss_pred EE-ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 385 VD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 385 ~~-~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.. +......|..|.|+| .+..|+++...|.+.+||++.......+ ..+|.++|.++.|+|+ ..+|++|+.|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k------~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK------LTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH------hhcccCceEEEeecCC-CceeeecCCC
Confidence 53 555677899999999 6789999999999999999976654332 4456799999999997 5899999999
Q ss_pred CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCE-EEEEe--CCCcEEEEEcCCCCccccc--cccCccceeEEccCC
Q 005956 463 SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKH-IISIG--DDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEG 536 (667)
Q Consensus 463 g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~-l~sgs--~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~dg 536 (667)
+.|+|||.... ...........++..+.|-|...+ ||+++ .|-.|+|||+..+..+... .+..+.+.++|-...
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 99999997632 111111225678999999998765 55554 4778999999988765432 333444444555433
Q ss_pred cEEEEecCCC
Q 005956 537 VSVAVQWPGI 546 (667)
Q Consensus 537 ~~lav~w~~~ 546 (667)
..+..+-+.+
T Consensus 322 ~~~l~s~sKD 331 (839)
T KOG0269|consen 322 RINLWSCSKD 331 (839)
T ss_pred ceeeEeecCc
Confidence 4444333333
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.2e-19 Score=188.09 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=122.6
Q ss_pred eEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 394 ISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 394 v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
|+.+.|.| |...|++++.||.|++|.+..+.+.............|..+|+++.|+|--...|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 66777888 67789999999999999998776654433333334557789999999997677999999999999999987
Q ss_pred ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc---cCccceeEEccCCcEEEEecCC
Q 005956 473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK---NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---~~~~~~~~fs~dg~~lav~w~~ 545 (667)
.....+..+|...|..++|||+|+.+|+.+.||+|+||+....+.+..... .....-+.|.+||.++.+.--.
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 666666666999999999999999999999999999999988776554322 2334457899999988885433
No 138
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=189.00 Aligned_cols=244 Identities=18% Similarity=0.257 Sum_probs=198.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+-.-.|.+++.||+|++||+|..-|+++||++.+.
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--------------------------------------------- 491 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--------------------------------------------- 491 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhh---------------------------------------------
Confidence 45567999999999999999999999999999862
Q ss_pred CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCC--CEEEEEecC
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDD--NYFISGSID 371 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~--~~l~sgs~D 371 (667)
.....+..|...|.||.|+... +|++++.|.-|.|||+...- +++++ .|...|+++.|-- ++ ..+++++.|
T Consensus 492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGAD 570 (1080)
T KOG1408|consen 492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGAD 570 (1080)
T ss_pred hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCc
Confidence 3355677999999999998532 89999999999999997653 45555 4999999999988 44 678999999
Q ss_pred CeEEEEecCC---CeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 372 GKVRIWGVCE---KRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 372 g~v~iwdl~~---~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
..|.+--.+. +.+.. ....+..++.++..|..+++++++.|.+|+||++.+++.... +.+ ...+.+....
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~---FKg-s~~~eG~lIK 646 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS---FKG-SRDHEGDLIK 646 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee---ecc-cccCCCceEE
Confidence 8775433221 22221 122356689999999999999999999999999998876543 222 2345577888
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+...|.| .||++...|.++.++|.....+..+..+|...|+.+.|++|-++|++.+.||.|.||.+.-
T Consensus 647 v~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999996 8999999999999999876666666666999999999999999999999999999999865
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.1e-20 Score=199.15 Aligned_cols=227 Identities=19% Similarity=0.314 Sum_probs=190.9
Q ss_pred eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
+..|...|.++..-..+ .+++|+.|..+-+|.+....++..+ .|..+|.++.|++ ...+|+.|+.+|+|++||+...
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhh
Confidence 44688888888875555 8889999999999999877777664 6999999999999 8999999999999999999998
Q ss_pred eEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 383 RVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 383 ~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
+.++ +.+|...+..+.|+|-|.+++.|+.|+.+.+||.+...+... .+.|...+..+.|+|+| .+++.++.
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-------~~s~~~vv~~l~lsP~G-r~v~~g~e 174 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-------YKSHTRVVDVLRLSPDG-RWVASGGE 174 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-------ecCCcceeEEEeecCCC-ceeeccCC
Confidence 8665 788999999999999999999999999999999996555432 23355778999999996 89999999
Q ss_pred CCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcE
Q 005956 462 DSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVS 538 (667)
Q Consensus 462 dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~ 538 (667)
|..++|||+.. ....|.. |.+.+.++.|+|..-++++||.|++|++||+++-+..... .....+.+..|+|+|..
T Consensus 175 d~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred cceeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence 99999999864 4555555 8899999999999999999999999999999977654433 23455667899999988
Q ss_pred EEEe
Q 005956 539 VAVQ 542 (667)
Q Consensus 539 lav~ 542 (667)
++..
T Consensus 253 ~~~G 256 (825)
T KOG0267|consen 253 VLSG 256 (825)
T ss_pred eecC
Confidence 7763
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=8.9e-19 Score=184.30 Aligned_cols=279 Identities=19% Similarity=0.291 Sum_probs=204.7
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc------------------eeeeeeCCCC-CccccCCCCeE
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA------------------ASCKSFTDDG-GFGSNAKEGKI 276 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~------------------~~~~~~~~~~-~~~~~~~~~~~ 276 (667)
..+.||++-|.++.|+|.+..|++++.|.++.||.-.+.. --...+.+++ .+++....|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 4567999999999999999999999999999999876431 0111223333 23334444555
Q ss_pred EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEe----eCCC
Q 005956 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF----DHHN 350 (667)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~----~h~~ 350 (667)
.+|....... ........||.+.|.+++|.|.| +|++.|.|.|-||+---.. ..-..+ .|..
T Consensus 341 hlWkt~d~~~------------w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 341 HLWKTKDKTF------------WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEEeccCccc------------eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 5554222111 12344567999999999999999 9999999999999865422 122222 3889
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCC-------------------------------------------Ce----
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------------------------------KR---- 383 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------------------------------------------~~---- 383 (667)
.++|++|-+ ....|++|.....+|+|+... +.
T Consensus 409 Dl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 409 DLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred cceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 999999998 577899998888899996521 00
Q ss_pred ------------------------------EEEecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceee
Q 005956 384 ------------------------------VVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLE 428 (667)
Q Consensus 384 ------------------------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~ 428 (667)
+.++.+|...|.+++.+|+|+.+|+++... .|++|+..+.....
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~- 566 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ- 566 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-
Confidence 001223445699999999999999988653 68999987655433
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEE---eCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK---GLPKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
.+ ..|.-.|+.++|+||| ++|++.+.|.++.+|...+ ....+. ...|..-|.+++|+|++++++|+|.|
T Consensus 567 ~L------~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 567 EL------EGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred ee------cccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 22 2335789999999996 8999999999999998542 111111 34588899999999999999999999
Q ss_pred CcEEEEEcCCC
Q 005956 505 CRVYVWNYDEL 515 (667)
Q Consensus 505 g~I~iWd~~~~ 515 (667)
.+|+||.....
T Consensus 640 K~VkVW~~~~~ 650 (764)
T KOG1063|consen 640 KKVKVWEEPDL 650 (764)
T ss_pred ceEEEEeccCc
Confidence 99999999877
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=5.1e-19 Score=184.52 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=180.8
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
..+|.++|..++|.|....|++++.|.++++||+.+....
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~---------------------------------------- 135 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV---------------------------------------- 135 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee----------------------------------------
Confidence 4589999999999996679999999999999999863221
Q ss_pred cCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe--------------------EeEEe--------e
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ--------------------CLNVF--------D 347 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~--------------------~~~~~--------~ 347 (667)
-...+.||...|.+++|.+.+ .|++|+.||.|.|||+.... ..+.. .
T Consensus 136 ---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 136 ---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ---cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 122477999999999999987 89999999999999976322 00000 1
Q ss_pred CCC----cEEEEEEeeCCCCEEEEEec-CCeEEEEecCCCeEEE---------eccc---CCceEEEEEeeCCCEEEEEe
Q 005956 348 HHN----YVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVVD---------WADV---RDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 348 h~~----~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~~~~~~---------~~~~---~~~v~~v~~spdg~~l~~gs 410 (667)
+.. .|+.+.| . |+..|++++. |+.|++||++...... +..+ ...+.+++....|.++.+.+
T Consensus 213 ~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 233 3445555 4 7889999888 9999999998754321 1112 23477888888899999999
Q ss_pred cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEE
Q 005956 411 ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSA 489 (667)
Q Consensus 411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v 489 (667)
.|+.|++|++.+........ +.++.. ...-..-..+|++ .++++|+.|...++|.+..+.... ...+|...|+++
T Consensus 291 tD~sIy~ynm~s~s~sP~~~-~sg~~~--~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAE-FSGKLN--SSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV 366 (720)
T ss_pred cCCcEEEEeccccCcCchhh-ccCccc--ceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence 99999999998766543311 111100 0111223457885 899999999999999987543221 223488899999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEEcCCCC
Q 005956 490 SFTTTG-KHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 490 ~~spdg-~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+|.|.. .-++++++|..++||++..+-
T Consensus 367 ~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 367 RWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eeccccCCCceeeccCcceEEEeccCch
Confidence 996643 346677999999999997653
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.3e-18 Score=166.10 Aligned_cols=205 Identities=17% Similarity=0.272 Sum_probs=170.1
Q ss_pred eccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe------------EeEEe----eCCCcEEEEEEeeCCCCEEEE
Q 005956 306 HGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ------------CLNVF----DHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~------------~~~~~----~h~~~V~~l~f~p~d~~~l~s 367 (667)
..|.+.|++|...+.. ++++|+.||.|.+||++... |+... .|...|..+.|.|.|...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 3688999999998754 99999999999999997532 21111 277799999999999999999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
++.|.++++||..+-+....+...+.|.+-+++|- .-++|+|+.+-.|++.|+..+..... ...|...|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------LsGHr~~vl 192 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------LSGHRDGVL 192 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee-------eccccCceE
Confidence 99999999999999998888888899999999983 34788899999999999998876432 233468899
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeE-----------E-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDV---IHKF-----------K-GLPKSGSQMSASFTTTGKHIISIGDDCRVYV 509 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~-----------~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i 509 (667)
++.|+|.....|++|+.||.|++||+++. ...+ + ...|.+.+..++|+.+|.++++.+.|..+++
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 99999987778899999999999997643 1111 1 2347788999999999999999999999999
Q ss_pred EEcCCCCc
Q 005956 510 WNYDELCF 517 (667)
Q Consensus 510 Wd~~~~~~ 517 (667)
|+...+..
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99988764
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=8.1e-19 Score=169.20 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=164.9
Q ss_pred ceeeccccccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...|-.|.+.|+++.|.++-. .|++|++||.|.+|++..
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------------------------------------- 116 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------------------------------------- 116 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------------------------
Confidence 456668999999999999876 999999999999999985
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
...+..+++|.+.|+.++.+|.+ +-++.+.|+.+++||+-+|+.-.........+.+.|+| .|.+|+.++.+
T Consensus 117 ------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 117 ------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN 189 (362)
T ss_pred ------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc
Confidence 35688999999999999999999 66689999999999999998777776666666699999 88888887765
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE--c
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--S 449 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~--s 449 (667)
.|-+|.+....+.........+.++.|. ++..+++|..++.|.+||..+...... ...|..+|.++.+ .
T Consensus 190 -~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~-------~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE-------FLAHENRVKDIASYTN 260 (362)
T ss_pred -EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee-------eecchhheeeeEEEec
Confidence 5999999888776554444556666664 567999999999999999987433221 3345688999884 3
Q ss_pred cCCCeEEEEEeCCCcEEEEECCc
Q 005956 450 RDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
|+ +.+|++++.||.|+|||+..
T Consensus 261 ~~-~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 261 PE-HEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CC-ceEEEEeccCceEEEEEccc
Confidence 34 48999999999999999763
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=2.2e-18 Score=173.64 Aligned_cols=207 Identities=18% Similarity=0.277 Sum_probs=172.6
Q ss_pred cceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCe----EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ----CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~----~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
+.....-|...|++++|+|.. ++++|..-|.|-+||+.+.+ -+..+ .|..+|.++.|+|.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 445666789999999999965 78899999999999995332 23333 49999999999999999999999999
Q ss_pred eEEEEecCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 373 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 373 ~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+|++-|+.+..... .......+..+.|+.+...+++|..-|...+||+++.......+.++. .+|++++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~------kKI~sv~~N 331 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK------KKITSVALN 331 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh------cccceeecC
Confidence 99999998875433 333455678888988888899999889999999999887666555554 589999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCccee----eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
|....++++++.|++.+|||++++.. .+....|...|.++.|||.+-.|+|.+.|..|+|||..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99889999999999999999885432 24456689999999999999889999999999999984
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.6e-19 Score=179.08 Aligned_cols=202 Identities=20% Similarity=0.323 Sum_probs=167.1
Q ss_pred cccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 206 CMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 206 ~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
..+++.-.+...+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+...-. ++ .
T Consensus 107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~------a~------------------~-- 160 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS------AD------------------N-- 160 (476)
T ss_pred EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc------cc------------------c--
Confidence 345556666677889999999999999999999999999999999874110 00 0
Q ss_pred ceeecCCCcccccCCcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC
Q 005956 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD 362 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~ 362 (667)
+...+|++.|.+|+-+|+++...+.+ +|+|+|.|.++++||+..+..+..+.....+.+++..| .+
T Consensus 161 ----------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae 229 (476)
T KOG0646|consen 161 ----------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AE 229 (476)
T ss_pred ----------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cc
Confidence 00347899999999999999988754 99999999999999999999999999999999999999 89
Q ss_pred CEEEEEecCCeEEEEecCCCe-----------------EEEecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 363 NYFISGSIDGKVRIWGVCEKR-----------------VVDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~-----------------~~~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
..++.|+.+|.|.+.++..-. ...+.+|.+ .|+|++++-||..|++|+.||.+++||+.+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 999999999999998774321 223556766 8999999999999999999999999999987
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+....... ..++|+.+++.|-
T Consensus 310 Q~iRtl~~-------~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQT-------SKGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhh-------hccccceeEeecc
Confidence 76544221 1378999999664
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=174.78 Aligned_cols=285 Identities=17% Similarity=0.281 Sum_probs=205.3
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..+.....+....++||+|+.+|.+..++.|++||.+..++.......
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------------------- 145 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------------------- 145 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE--------------------------------
Confidence 334444556677899999999999999999999997777776643221
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-----e----CCCcEEEEEEee
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-----D----HHNYVTCVQFNP 359 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-----~----h~~~V~~l~f~p 359 (667)
....|.-.++.|.+++|+|++ .+++|+.||.|++||+.++..+... + ...-|+++.|..
T Consensus 146 -----------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 146 -----------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR 214 (691)
T ss_pred -----------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence 122333457899999999999 7999999999999999998877732 1 233588899885
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
...|++|...|+|.+||...+.+++ ...|...|.+++..++++.+++++.|+.+..|...++... +........
T Consensus 215 --d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~ 289 (691)
T KOG2048|consen 215 --DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDL 289 (691)
T ss_pred --cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccC
Confidence 6789999999999999999999876 5668889999999999999999999999999998877653 222333445
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
|...|.+++..++ .+++|+.|..+.+-................+-. -+...|.. +|+.-=.+..+.+|.+.+...
T Consensus 290 h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~ 365 (691)
T KOG2048|consen 290 HAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN-RLLVLWKAHGVDLWRLGSVIL 365 (691)
T ss_pred Ccccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccc-eEEEEeccccccceeccCccc
Confidence 6678999999876 899999999998876543111110000111111 12223333 333333355677787766511
Q ss_pred ----------cccccccCccceeEEccCCcEEEEecCCC
Q 005956 518 ----------PSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 518 ----------~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.........+++.+.+|||+.+|++....
T Consensus 366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~ 404 (691)
T KOG2048|consen 366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSR 404 (691)
T ss_pred ccccChhhheeeecCCccceeeeccCCCCCEEEEeeccc
Confidence 11234556788889999999999987544
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2e-18 Score=170.80 Aligned_cols=235 Identities=22% Similarity=0.345 Sum_probs=182.5
Q ss_pred eeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 217 EIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 217 ~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+.||+++|..++|+| +...||+|++|.+|.||++-......
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~------------------------------------- 118 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR------------------------------------- 118 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------------------------------------
Confidence 3469999999999999 56699999999999999987522110
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
-...++..|.||...|--++|+|.. .|++++.|.+|.|||+.+++.+..+.|.+-|+++.|+. +|.+|++.+.|.+
T Consensus 119 -~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKk 196 (472)
T KOG0303|consen 119 -DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKK 196 (472)
T ss_pred -CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccce
Confidence 0236789999999999999999976 89999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEecCCCeEEEec-ccCC-ceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 374 VRIWGVCEKRVVDWA-DVRD-VISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 374 v~iwdl~~~~~~~~~-~~~~-~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
|||||.++++++... .|.+ ....+-|-.+|..+.+|. .+..+-+||..+.........+.. .+.|.---|
T Consensus 197 vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-----SnGvl~PFy 271 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-----SNGVLLPFY 271 (472)
T ss_pred eEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-----CCceEEeee
Confidence 999999999988643 4433 345566778888655554 456888999877665543333333 245665667
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCC
Q 005956 449 SRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg 495 (667)
.+|.+-..++|-.|+.|+.|.+.+ .++-+..+....+...+.|-|..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 787655666777899999998763 24444444456677777777753
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=4.5e-18 Score=164.42 Aligned_cols=277 Identities=19% Similarity=0.272 Sum_probs=190.8
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
...+.|||||..|++-++|..+++|++-...-... ..+.+. .+...+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~------------~~~~~~---------------------~~~~~~ 98 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK------------ADGPLN---------------------FSKHLS 98 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccC------------CCCccc---------------------ccccee
Confidence 34688999999999999999999999863111000 000000 001111
Q ss_pred ee-ccccceEEEEec-------CCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCC---cEEEEEEeeCCCCEEEEEe
Q 005956 305 LH-GHKGDVLDLAWS-------NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHN---YVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 305 l~-gh~~~V~~l~~s-------~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~---~V~~l~f~p~d~~~l~sgs 369 (667)
++ .....|.+.+|- |+. ++++.+.+.-|++||.-+|+....+. |.+ ...+++|+| ||.+|++|
T Consensus 99 ~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG- 176 (406)
T KOG2919|consen 99 YRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG- 176 (406)
T ss_pred EEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-
Confidence 11 234567777875 455 89999999999999999999887774 544 456899999 99998876
Q ss_pred cCCeEEEEec-CCCeEE---E-----ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 370 IDGKVRIWGV-CEKRVV---D-----WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 370 ~Dg~v~iwdl-~~~~~~---~-----~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
....|+++|+ +.|+-. . .....+.+.+++|+| +.+.+++|+....+-||.-........ +. .|
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l---lg----gh 249 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL---LG----GH 249 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee---ec----cc
Confidence 5678999999 555422 1 223467799999999 556999999999998988765544322 12 34
Q ss_pred CCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcceee-EEeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 440 GNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~-~~~~~~---~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.+.||.++|.++| +.|++|+ .|-.|..||++..... +....| +..-.-....|+|++|++|+.||.|++||+++
T Consensus 250 ~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 250 GGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6899999999997 5666665 4779999998853321 222222 23334456689999999999999999999998
Q ss_pred -CCc-cccccccCccceeEEccCCcEEEEecC
Q 005956 515 -LCF-PSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 515 -~~~-~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+.. ............+.++|-=.++|+++.
T Consensus 329 ~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 329 LGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred CCCcccccccccccccceecCcccceeeeccC
Confidence 432 223334445555678886566666543
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=3.1e-18 Score=166.02 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=203.8
Q ss_pred ceeeccccccEEEEEEcC-----CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 215 SQEIQAHKGCIWTLKFSP-----DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fsp-----dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
.+....|+.+|..++|++ +-+.+||+|.+ .+.||........
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i-------------------------------- 77 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI-------------------------------- 77 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------------------
Confidence 344568999999999985 34577887765 5888887642110
Q ss_pred cCCCcccccCCcceeee--ccccceEEEEecC---C-C-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCC
Q 005956 290 IPDEVFQIEESPLQELH--GHKGDVLDLAWSN---S-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPID 361 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~--gh~~~V~~l~~s~---~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d 361 (667)
..++.+. .|......++|+- + + +|+.++.-|.|+|.|+.++++...+ +|...|..+.|+|..
T Consensus 78 ----------r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~ 147 (385)
T KOG1034|consen 78 ----------RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR 147 (385)
T ss_pred ----------eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC
Confidence 0111111 3666677778863 2 3 8999999999999999999998887 499999999999988
Q ss_pred CCEEEEEecCCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee--e-e-----
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--E-K----- 429 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~--~-~----- 429 (667)
.+++++++.|..||+|++++..++. ..+|++.|.++.|+++|.+|++++.|-.+.+|++...+... + .
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 8999999999999999999999875 45689999999999999999999999999999998432211 1 0
Q ss_pred -----------Eeecc--ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------------eeEEeC
Q 005956 430 -----------VDFHD--RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------------HKFKGL 480 (667)
Q Consensus 430 -----------~~~~~--~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----------------~~~~~~ 480 (667)
..+.. ....|...|-|+.|-. .++++-+.++.|..|...+.. ..+...
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 11111 1223556666777764 489999999999999753211 112221
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc---cc--ccCccceeEEccCCcEEEEe
Q 005956 481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---KQ--KNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~---~~--~~~~~~~~~fs~dg~~lav~ 542 (667)
.........+|.|-++.||.|...|.|++||++..+.+.. .+ ....+...+|+-||.+|.+-
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 1112234456678889999999999999999988765321 11 22344456899999877764
No 150
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=7.6e-19 Score=181.30 Aligned_cols=260 Identities=18% Similarity=0.294 Sum_probs=191.5
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
++..|.+.|+.++|.|....|++|+.||+|++|+++..... -.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------------~~ 331 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------------AE 331 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------------cc
Confidence 77889999999999999999999999999999999531000 00
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-------e---EeE-EeeCCCcEEEEEEeeCCCCE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-------Q---CLN-VFDHHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-------~---~~~-~~~h~~~V~~l~f~p~d~~~ 364 (667)
...+++.+|.+|.++|.|++..+++ .+++|+.||+|+.|++... . ... ..+|.+.|+.+++++ ....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccc
Confidence 1246899999999999999999999 9999999999999966421 1 111 236999999999999 7888
Q ss_pred EEEEecCCeEEEEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc---C
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT---S 439 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~---~ 439 (667)
|++++.||++++|+........+. ...+...++.+... .++....+.....+++.+.........+...... .
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~ 488 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRR 488 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhheeeccccCCCcccc
Confidence 999999999999998877763322 23344555555432 2222223344445554443333221111111111 1
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
...|..+.++|.+ .+.+++..|+.|+++|............|...++++++.|+|.||++++.|+.|++|.+....+
T Consensus 489 ~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 489 YPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 2557788889985 7999999999999999776555555555888999999999999999999999999999976544
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.1e-17 Score=171.26 Aligned_cols=242 Identities=17% Similarity=0.173 Sum_probs=178.7
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.+...+...+.||++.|.+|...|.| .|++|+.||+|+||.+.++.|++++.....|.|++|+|....-++.+.....+
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence 34455667789999999999999999 99999999999999999999999999999999999999444444444444444
Q ss_pred EEEecCCC-----------------------e---------------EEEecccCCceEEEEEeeCCCEEEEEecC---C
Q 005956 375 RIWGVCEK-----------------------R---------------VVDWADVRDVISAICYIPDGKGFIVGSIT---G 413 (667)
Q Consensus 375 ~iwdl~~~-----------------------~---------------~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g 413 (667)
.|.+..-| + +.....|...|..+.|+..|.+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 44432111 0 11234456779999999999999997654 4
Q ss_pred cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956 414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 414 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 493 (667)
.|.|+++.....+. .+ ....+.|.++.|+|.- .++++++. ..|+|||+.+....-+.......|..++++|
T Consensus 547 ~VliHQLSK~~sQ~---PF----~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQS---PF----RKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred eEEEEecccccccC---ch----hhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 68888887654431 12 2224789999999985 45555543 5799999876544444444678899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCccc--cccccCccceeEEccCCcEEEEecCCC
Q 005956 494 TGKHIISIGDDCRVYVWNYDELCFPS--SKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 494 dg~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.|..|+.|+.|+.+..+|++-...+. ..++......++|++.--.+|.++.+.
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 99999999999999999998765433 334455556668888767777665543
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.8e-18 Score=171.49 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=170.0
Q ss_pred eccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 218 IQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
-++|+++|.+|.|+.+- ..||+||.|.+|++||+.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~------------------------------------------- 275 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT------------------------------------------- 275 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-------------------------------------------
Confidence 34899999999998764 4899999999999999997
Q ss_pred ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC-CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
++|..++..|.+.|.++.|+|.. .|++|++|++|.+.|.+. ...-..++..+.|-.++|+|.....++++..||+
T Consensus 276 --g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 276 --GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred --CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce
Confidence 45677788899999999999977 999999999999999984 3334455678899999999988899999999999
Q ss_pred EEEEecCCC-eEE-EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 374 VRIWGVCEK-RVV-DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 374 v~iwdl~~~-~~~-~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
|+-+|++.. +++ ....|.+.|.++++++. ...+++++.++.+++|++........... .-..+...|+++.|
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-----~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-----SFKLGRLHCFALDP 428 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-----cccccceeecccCC
Confidence 999999985 444 57789999999999985 45788899999999999986554332111 01124577888999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcc
Q 005956 451 DESQRIMITSEDSKLRILDGVDV 473 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~ 473 (667)
+-..+++.|+..+.++|||+.+.
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CcceEEEecCccceEEEeecccC
Confidence 87788999999999999997643
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.4e-19 Score=194.55 Aligned_cols=249 Identities=16% Similarity=0.237 Sum_probs=197.6
Q ss_pred ccEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 223 GCIWTLKFSPDGRY----LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 223 ~~I~~v~fspdg~~----Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
..-+.++|.+.|.. ||.|.+||.|.+||...... ...
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------------------------~~~ 105 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------------------------NAS 105 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------------------------Ccc
Confidence 34667888887765 99999999999999875100 002
Q ss_pred CCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
...+.++..|++.|..|.|++.. .|++|+.||.|.|||+.+-+.-..+ ...+.|.+++|+......|++++.+|+
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 34466778899999999999865 8999999999999999875444333 256789999999877888999999999
Q ss_pred EEEEecCCCeEE-EecccC--CceEEEEEeeCC-CEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 374 VRIWGVCEKRVV-DWADVR--DVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 374 v~iwdl~~~~~~-~~~~~~--~~v~~v~~spdg-~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
+.|||++..+.+ .+..+. ..+..+.|+|+. ..+++++.|. .|.+||++......+.+. .|...|.++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~------~H~~Gilsl 259 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE------GHQRGILSL 259 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc------ccccceeee
Confidence 999999987644 443333 458899999976 4666666553 789999987666554332 345789999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.|++.+..++++++.|++|.+|+..+.............+..+.|.|... .+++++-||.|-||.+.+..
T Consensus 260 sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 260 SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999889999999999999999988666666655778899999999887 77888999999999998765
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=4.7e-18 Score=167.39 Aligned_cols=203 Identities=20% Similarity=0.375 Sum_probs=159.2
Q ss_pred cceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...++.+|.+.=++++|||-. ..|+||.--+.|++|...++..
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W------------------------------------ 246 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW------------------------------------ 246 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCce------------------------------------
Confidence 344677999999999999932 2588888888899999886422
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCC---eEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~d~~~l~s 367 (667)
... ...|.+|+..|-+|+|||.. .|++||.||+|+|||++.+ .++.+-.|...|..|.|+. ...+|++
T Consensus 247 ---~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLas 319 (440)
T KOG0302|consen 247 ---KVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLAS 319 (440)
T ss_pred ---eec---CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-Ccceeee
Confidence 112 23456799999999999965 9999999999999999988 5566656999999999998 6669999
Q ss_pred EecCCeEEEEecCCCeE---E-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcc---------------ee
Q 005956 368 GSIDGKVRIWGVCEKRV---V-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---------------KL 427 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~---~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~---------------~~ 427 (667)
|+.||+++|||++.-+. + .+..|+.+|+++.|+| +...|++++.|..|.+||+....- +.
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPp 399 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPP 399 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCc
Confidence 99999999999987443 3 5778999999999999 456788899999999999964321 11
Q ss_pred eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+.+-.|. ....+..+.|+++-+.+|++++.||
T Consensus 400 QLLFVHq----GQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 400 QLLFVHQ----GQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred eeEEEec----chhHhhhheeccCCCCeEEEecccc
Confidence 1111111 1256788999998777999999887
No 155
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-16 Score=168.72 Aligned_cols=405 Identities=14% Similarity=0.182 Sum_probs=274.9
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-ceeee--eeCCC-CC--------------ccccCCCCe
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-AASCK--SFTDD-GG--------------FGSNAKEGK 275 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-~~~~~--~~~~~-~~--------------~~~~~~~~~ 275 (667)
....+..|.+.|.-+. |-|.+|+++..++.+.||+..+. ..... .+... +. ++.+...|.
T Consensus 106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~ 183 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGR 183 (910)
T ss_pred EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCc
Confidence 3456667888888776 56889999999999999998873 11110 11110 01 111122222
Q ss_pred EEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEE
Q 005956 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVT 353 (667)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~ 353 (667)
+.+|... ..+.+++++++...|+++.-+|-= .++.|..+|+|.|++++.++.+..|+|. +.|+
T Consensus 184 lql~Nvr---------------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 184 LQLWNVR---------------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT 248 (910)
T ss_pred EEEEEec---------------cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccccee
Confidence 2222221 356789999999999999988866 8999999999999999999999999986 9999
Q ss_pred EEEEeeCCCC-EEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee---
Q 005956 354 CVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL--- 427 (667)
Q Consensus 354 ~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~--- 427 (667)
.++|.. ||+ .+++|+..|.+.+||++..+.+. ...|.+.|+...|-|....+++++.|..+++|-..++.-..
T Consensus 249 slSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L 327 (910)
T KOG1539|consen 249 SLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL 327 (910)
T ss_pred EEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence 999998 555 56667777999999999988764 23466778888888877777777777776665332110000
Q ss_pred --------------------------------------------------------------------------------
Q 005956 428 -------------------------------------------------------------------------------- 427 (667)
Q Consensus 428 -------------------------------------------------------------------------------- 427 (667)
T Consensus 328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence
Q ss_pred -----------------eeEeeccc-----------cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe
Q 005956 428 -----------------EKVDFHDR-----------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 479 (667)
Q Consensus 428 -----------------~~~~~~~~-----------~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~ 479 (667)
..+.+... .+.....+++++.++-| ++.+.|...|.|-+|++...+++-..
T Consensus 408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeeccc
Confidence 00000000 00112456778888875 88999999999999999876665443
Q ss_pred ---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCcccccccCC
Q 005956 480 ---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS 556 (667)
Q Consensus 480 ---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~ 556 (667)
..|...|+.++...-++.+++++.+|.+++||+++..............++.++.....+|++-..-.-.+....
T Consensus 487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~-- 564 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV-- 564 (910)
T ss_pred ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch--
Confidence 458999999999999999999999999999999988755555556666677777777777776544322211100
Q ss_pred CCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCc
Q 005956 557 SLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDV 635 (667)
Q Consensus 557 ~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
+-.+-.+...+....+...|||+++.++..+-.++ -+|..-....-+. -++...|.+
T Consensus 565 ----t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~-------------~~vd~~~~s----- 622 (910)
T KOG1539|consen 565 ----TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG-------------LLVDSPCTS----- 622 (910)
T ss_pred ----hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee-------------EecCCccee-----
Confidence 00011222344456778899999999998777666 5665432111100 001122333
Q ss_pred ccCCCCCceEEEecCCC-CeEeeeeecC
Q 005956 636 RAISATWGLVIVTAGCD-GMIKTFHNYG 662 (667)
Q Consensus 636 ~~~~~~~g~vivta~~~-G~ir~f~~~~ 662 (667)
..-+|-|.+++|+..| --|.+|-|.-
T Consensus 623 -ls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 623 -LSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred -eEECCCCCEEEEEEecCceEEEEEchh
Confidence 6678999999999999 5689998854
No 156
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=2.1e-17 Score=173.80 Aligned_cols=313 Identities=14% Similarity=0.211 Sum_probs=213.3
Q ss_pred eccccccEEEEEEcCC-----------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956 218 IQAHKGCIWTLKFSPD-----------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 218 l~~H~~~I~~v~fspd-----------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (667)
+--|...||.+.--|. ...+.|++.|++||+|++....-..++- .+ .....--++.+.+.. .
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyr-RN---ils~~l~ki~y~d~~---~ 437 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYR-RN---ILSANLSKIPYEDST---Q 437 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceee-cc---cchhhhhcCccccCc---h
Confidence 3459999999887661 1268999999999999998511000000 00 000000000000000 0
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC--CC
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD 362 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~--d~ 362 (667)
.++ .+....+-.+......+....|.+++.+|++ +|++|..-|+++||++..-+....+. |...|.|+.|+.. ..
T Consensus 438 q~~-~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 438 QIM-HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhh-hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 000 0000000112233334556679999999999 99999999999999998877766664 9999999999852 35
Q ss_pred CEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 363 NYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
++|++++.|..|++||+...-. ..+.+|...|+++.|--.| ..+++++.|..|.+--..... ....+ ...+...
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f-~r~t~t~ 594 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLF-PRHTQTL 594 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc-Cceec-ccccccc
Confidence 6899999999999999876532 2467789999999999887 678888888776543332111 01111 1111122
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
....+..++..|. .+++++++.|..|+|||+. +..+.|++. .|.+....+...|.|-|||+...|.++.++|+-++
T Consensus 595 ~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 2367899999998 5899999999999999987 455667663 45688899999999999999999999999999999
Q ss_pred Ccccc-ccccCccceeEEccCCcEEEE
Q 005956 516 CFPSS-KQKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 516 ~~~~~-~~~~~~~~~~~fs~dg~~lav 541 (667)
++... ..+...++-+.|.+|-+.|..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhhee
Confidence 98655 344455666788888775544
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=9.4e-18 Score=162.69 Aligned_cols=245 Identities=21% Similarity=0.361 Sum_probs=183.1
Q ss_pred cccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 220 ~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.|...-..++|+-| ..+||.||.-|.|+|.|+.+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~------------------------------------------ 124 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS------------------------------------------ 124 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch------------------------------------------
Confidence 47777888888754 34999999999999999986
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.+....+.+|...|+.|.++|+. +++++|.|.+||+|++++..|+..|+ |.+.|.++.|++ ++.+|++++
T Consensus 125 ---~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScG 200 (385)
T KOG1034|consen 125 ---GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCG 200 (385)
T ss_pred ---hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccC
Confidence 34466788999999999999988 99999999999999999999999995 999999999999 999999999
Q ss_pred cCCeEEEEecCCCeEEE-----------------------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEe
Q 005956 370 IDGKVRIWGVCEKRVVD-----------------------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-----------------------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~ 420 (667)
.|.++++|++...+... ...|...|-|+.|- |+++++=+-++.|..|..
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 99999999998432110 01133334444443 567888888889999987
Q ss_pred cCCcce------ee-eEeeccccCcCCCCeEEEE--EccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCCCCCCeE
Q 005956 421 SGNDLK------LE-KVDFHDRKKTSGNKITGIQ--FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQM 487 (667)
Q Consensus 421 ~~~~~~------~~-~~~~~~~~~~~~~~I~~l~--~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~ 487 (667)
...... .+ .....++..-....|.-+. |.|-+ ..|+.|...|.|++||+.... .++.-......|.
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 311111 00 1111111222234455444 45553 689999999999999987322 2233333567889
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 488 SASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 488 ~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
..+|+.||.+|+...+|+.|.-||.-
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999999999999864
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=173.53 Aligned_cols=267 Identities=21% Similarity=0.312 Sum_probs=199.5
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.|..++|-|||..|+.+..+ .+.|||+.. +..++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---------------------------------------------G~llq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---------------------------------------------GTLLQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCC---------------------------------------------ccccc
Confidence 89999999999988877655 588999985 45688
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
++++|.+.|.+++|+.+| ++++|+.|+.|.+|.-. .+-+..+.|.+.|.|+.|+| -...+++++.. ..-+|.....
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK 124 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK 124 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh
Confidence 999999999999999999 99999999999999864 33445677999999999999 77888888764 4778987766
Q ss_pred eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC----eEEEE
Q 005956 383 RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES----QRIMI 458 (667)
Q Consensus 383 ~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~----~~l~~ 458 (667)
.+.+. .....+.+.+|..||++++.|-.+|+|.+-+....... .+. +....+.+|.+++|+|..+ ..+++
T Consensus 125 ~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~--~I~---Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 125 SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV--KIE---RPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce--EEe---CCCCCCCCceEEEecCCCCCCccceEEE
Confidence 55432 23456888999999999999999999999865433221 111 2334568999999999732 35666
Q ss_pred EeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCc
Q 005956 459 TSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV 537 (667)
Q Consensus 459 ~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~ 537 (667)
.....++.++.+. +.+.+-+. -.-...++.+-++|.|+..|+.|+.+.+|-.+.-..-....-.+-+-.+...|+++
T Consensus 199 ~DW~qTLSFy~LsG~~Igk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSGKQIGKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EeccceeEEEEecceeeccccc--CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc
Confidence 6666666666643 22221111 23345688889999999999999999999887755433333333333458899999
Q ss_pred EEEEecCCCC
Q 005956 538 SVAVQWPGIG 547 (667)
Q Consensus 538 ~lav~w~~~~ 547 (667)
+++++.-+..
T Consensus 277 ~v~~GCqDGT 286 (1081)
T KOG1538|consen 277 YVVVGCQDGT 286 (1081)
T ss_pred eEEEEEccCe
Confidence 9999765543
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.9e-17 Score=167.94 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=167.7
Q ss_pred EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~ 390 (667)
.|++..... ++++|+..++|+|||+....+.+.++ |...|+++.++- .+.||++++..|.|.|..+.++.......+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec
Confidence 333333334 89999999999999999776776665 999999999998 888999999999999999998876654333
Q ss_pred --CCceEEEEEeeCCCE-EEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 391 --RDVISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 391 --~~~v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
...|.-+.|+|..+. |.+++.+|.+.+||+.+...... ....|..+...|+|+|.+..+|++.+.|..|.+
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc------hhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 345668999997765 55688999999999987655322 234456889999999998889999999999999
Q ss_pred EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cccCccceeEEccC
Q 005956 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSE 535 (667)
Q Consensus 468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~d 535 (667)
||.......-.. ....+...++|+++|.+|+.|...|.|+.||+...+.+... .....+.+++|-+-
T Consensus 236 yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 236 YDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 998733222111 24678899999999999999999999999999887665442 23344667777664
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.6e-17 Score=155.09 Aligned_cols=226 Identities=12% Similarity=0.133 Sum_probs=172.4
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~ 389 (667)
..++.|++.| +|+.|+.||.|.|||+.+...-+.+. |..+|++++|++ +|+.|++++.|..|.+||+..+.+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999 99999999999999999998888775 999999999999 99999999999999999999999998888
Q ss_pred cCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 390 VRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 390 ~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
...+|..+.|+|..+ .+++.-.+..-.+.++........ .... ....+..-.+..|.+.| +++++|...|.+.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L--p~d~-d~dln~sas~~~fdr~g-~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL--PKDD-DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVY 180 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec--cCCC-ccccccccccccccCCC-CEEEEecCcceEEEE
Confidence 899999999999543 333333444455566554222211 1110 00111122233577875 899999999999999
Q ss_pred ECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc------cc------ccccCccceeEEcc
Q 005956 469 DGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP------SS------KQKNSVRSCEHFFS 534 (667)
Q Consensus 469 d~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~------~~------~~~~~~~~~~~fs~ 534 (667)
|..+ ++..++.. ....|..+.|+..|++|+.-+.|..|+.|++..-... .. .-.+..+.++.|+.
T Consensus 181 ~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 181 DAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred ecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 9774 45555552 2377889999999999999999999999998742111 11 12455677889999
Q ss_pred CCcEEEEec
Q 005956 535 EGVSVAVQW 543 (667)
Q Consensus 535 dg~~lav~w 543 (667)
||.+++.+.
T Consensus 260 dgeYv~a~s 268 (405)
T KOG1273|consen 260 DGEYVCAGS 268 (405)
T ss_pred CccEEEecc
Confidence 999999876
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=4e-17 Score=162.48 Aligned_cols=267 Identities=21% Similarity=0.369 Sum_probs=185.6
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
....|..|..+|+++.|+|+|.+||+|+++|.|.+|........ .... . ..
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-----~~d~-e-----------------------~~ 107 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-----DADT-E-----------------------AD 107 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-----cccc-h-----------------------hh
Confidence 34567899999999999999999999999999999987641110 0000 0 00
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
...........+.+|...|..++|+|++ ++++++.|.++++||+..|+.+..+. |..+|..++|.| -++++++-+.|
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccC
Confidence 0000122356678899999999999999 99999999999999999999998885 999999999999 88999999999
Q ss_pred CeEEEEecCCCeEEEecc--------------------c----CCceEEEEEeeCCCEEEEEec----CCc-----EEEE
Q 005956 372 GKVRIWGVCEKRVVDWAD--------------------V----RDVISAICYIPDGKGFIVGSI----TGT-----CHFY 418 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~--------------------~----~~~v~~v~~spdg~~l~~gs~----dg~-----i~l~ 418 (667)
...+.+++...+++.... | ..-...++|+|||..+++... .|. .++|
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEee
Confidence 888887776544332111 0 112456789999999888532 222 2444
Q ss_pred EecCCcceeeeEeeccccCcCCCCeEEEEEccC-------C---------CeEEEEEeCCCcEEEEECCcce--eeEEeC
Q 005956 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-------E---------SQRIMITSEDSKLRILDGVDVI--HKFKGL 480 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~-------g---------~~~l~~~s~dg~I~iwd~~~~~--~~~~~~ 480 (667)
+-...+.+ ...+... ..+...+.|+|- . ...+++....+.|+|||..... .....
T Consensus 267 srk~l~rP--~~~lp~~----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n- 339 (434)
T KOG1009|consen 267 SRKDLKRP--AARLPSP----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN- 339 (434)
T ss_pred ccccccCc--eeecCCC----CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee-
Confidence 43322222 1222221 233444444431 0 1234445556789999988633 33332
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
-|-..++.++|++||.+|+..|.||..-+-.++..+.
T Consensus 340 ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 340 IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 2788999999999999999999999888877776654
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=173.50 Aligned_cols=232 Identities=19% Similarity=0.257 Sum_probs=182.5
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
|...|.+++-. +.+|++|+.+++|.+|...++..
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~-------------------------------------------- 88 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE-------------------------------------------- 88 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCc--------------------------------------------
Confidence 77778888755 45999999999999999886322
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
-..+...+-++.+++|+.+| +++.||.|-.|++-++........+ +|..+|.++.|+| .+++|++.+.||+|++||
T Consensus 89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred -cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence 22233456789999999999 9999999999999999888777666 5999999999999 999999999999999999
Q ss_pred cCCCeEEEecc---------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 379 VCEKRVVDWAD---------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 379 l~~~~~~~~~~---------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+.++.+..... ....+..++|+|+|..+++.+.|+.|.+|+..+...... +.. +.+...++.++|+
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~---Lr~--~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK---LRD--KLSSSKFSDLQWS 241 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee---ecc--cccccceEEEEEc
Confidence 99887553211 134577899999999999999999999999988766543 211 1223449999999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
|.| .||++++.+|.|.|||..+... +.....|.+++|.|+..-|-.-...|...+|
T Consensus 242 PnG-~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 242 PNG-KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCC-cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 996 9999999999999999876222 3356789999999988766544444444444
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-17 Score=169.45 Aligned_cols=296 Identities=20% Similarity=0.301 Sum_probs=219.7
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+.+...|..|.|.|+.|.|+..|..|++|+.|..|.+||+....
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------------------------ 175 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------------------------------------ 175 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------------------------------------
Confidence 34455678999999999999999999999999999999998632
Q ss_pred CCcccccCCcceee-eccccceEEEEecCCC---eEEEEeCCCcEEEEecC-CCeEe---EEeeCCCcEEEEEEeeCCCC
Q 005956 292 DEVFQIEESPLQEL-HGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVG-CNQCL---NVFDHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 292 ~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~-~~~~~---~~~~h~~~V~~l~f~p~d~~ 363 (667)
+...+ .||...|....|-|.. .+++++.||.|++=.+. ++.+. +...|.++|..++.-|.+..
T Consensus 176 ---------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~ 246 (559)
T KOG1334|consen 176 ---------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK 246 (559)
T ss_pred ---------cccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC
Confidence 22233 4788888888888743 89999999999998764 33333 23359999999999998889
Q ss_pred EEEEEecCCeEEEEecCCCeEEE----ecccCC---ceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcce-----eeeE
Q 005956 364 YFISGSIDGKVRIWGVCEKRVVD----WADVRD---VISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK-----LEKV 430 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~~~~----~~~~~~---~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~-----~~~~ 430 (667)
.|++++.|+.+.-+|++.+.... ...... ...+++..|.. ..+++|+.|-.+++||.+.-... ...+
T Consensus 247 ~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f 326 (559)
T KOG1334|consen 247 PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF 326 (559)
T ss_pred cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc
Confidence 99999999999999998765322 122222 57788899954 58999999999999998754433 1111
Q ss_pred eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--------------cce-eeEEeCCCCCCeEEEEE-cCC
Q 005956 431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--------------DVI-HKFKGLPKSGSQMSASF-TTT 494 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--------------~~~-~~~~~~~~~~~v~~v~~-spd 494 (667)
..+.........|++++|+.++ .-|+++-.|-.|+++.-. ... +.|+++.+...|..+-| .|.
T Consensus 327 ~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 327 CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc
Confidence 1111111334679999999886 567777778889999521 122 34889888888888876 888
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcC
Q 005956 495 GKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 567 (667)
Q Consensus 495 g~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~ 567 (667)
..|+++||+=|.|.||+-.+++..... ....++.|+-=+| -+.+|++++.+...++|..
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP--------------~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP--------------HLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC--------------CCchhhccCCccceeeecC
Confidence 999999999999999999998875443 3344677765555 3445666666777777765
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=7.5e-17 Score=159.79 Aligned_cols=206 Identities=20% Similarity=0.295 Sum_probs=163.2
Q ss_pred ceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-------Ee-EEeeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-------CL-NVFDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-------~~-~~~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
.-.+.||+++|.+++|+|-+ .+++||.|.+|+||++..+. ++ ...+|...|--++|+|.-.+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 44567999999999999855 99999999999999986543 22 2336999999999999889999999999
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.+|.+|++.+++.+....|.+.|.+++|+.||.+|++.+.|..|+|||.+++....+..... +.+-..+.|-.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he------G~k~~Raifl~~ 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE------GAKPARAIFLAS 227 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc------CCCcceeEEecc
Confidence 99999999999977666699999999999999999999999999999999988766532222 244566778777
Q ss_pred CCeEEEEEe----CCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCC
Q 005956 452 ESQRIMITS----EDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 516 (667)
Q Consensus 452 g~~~l~~~s----~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~ 516 (667)
| . +++++ .+.++-+||..+ ....... .....|.---|.+|.+.|+.+| .|+.|+.|.+.+..
T Consensus 228 g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 G-K-IFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred C-c-eeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 6 4 66654 467899999654 3222222 2455566666789988887655 68999999998754
No 165
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=1.5e-18 Score=185.35 Aligned_cols=266 Identities=24% Similarity=0.390 Sum_probs=201.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+...+.|.+|..+|.|+.|...|.|++||+.|..|+||...+
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-------------------------------------- 221 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-------------------------------------- 221 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccc--------------------------------------
Confidence 344556789999999999999999999999999999999775
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
...+....||.+.|++++.+.++ ++++++.|..|++|.+.++.++.++ +|++.|++++|+| +.+.+
T Consensus 222 -------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss 289 (1113)
T KOG0644|consen 222 -------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSS 289 (1113)
T ss_pred -------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCC
Confidence 34577888999999999999888 9999999999999999999998877 5999999999999 23778
Q ss_pred cCCeEEEEecCCCeEEE-----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 370 IDGKVRIWGVCEKRVVD-----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
.||++++||.+-..... .....+.+.++-|-..+..+++|+.++.-..|.+....... ..+.
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-------------~~li 356 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-------------NLLI 356 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-------------cceE
Confidence 99999999988222211 12234557777888888999999999988888765332211 1112
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCccccc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
-+.++.+-..+.+++-.+-.+.+|++... .+...+ |...+..+.++|-+..+ .+++.||.+.|||+-.+......
T Consensus 357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred EEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 22222232346677777888999998765 455555 77788889999977665 47899999999999877543322
Q ss_pred c-ccCccceeEEccCCcEEEEe
Q 005956 522 Q-KNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 522 ~-~~~~~~~~~fs~dg~~lav~ 542 (667)
. ......-..|++||..++++
T Consensus 435 ~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 435 FIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred ecccceeeccccCCCCceEecC
Confidence 1 12222234899999998885
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.7e-18 Score=188.03 Aligned_cols=227 Identities=16% Similarity=0.265 Sum_probs=170.6
Q ss_pred ccceEEEEecCCC-----eEEEEeCCCcEEEEecCC---CeE---eEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 309 KGDVLDLAWSNSN-----YLLSCSMDKTVRMWQVGC---NQC---LNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 309 ~~~V~~l~~s~~~-----~l~s~s~Dg~I~iWd~~~---~~~---~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
....+.|+|.+.+ .|+.|..||.|.+||... +.. +..+ .|++.|..+.|++..+++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 3457888997644 588999999999999865 222 2233 399999999999977789999999999999
Q ss_pred EecCCCeEE-E--ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 377 WGVCEKRVV-D--WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 377 wdl~~~~~~-~--~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
||+..-+.- . .....+.|.+++|+.. .+.|++++.+|.+.|||++.++.....-...+ ...+..++|+|++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDH 218 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCC
Confidence 999874322 1 2235677999999884 45677889999999999998755443211111 1558899999999
Q ss_pred CeEEEEEeCCC---cEEEEECC---cceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccccC
Q 005956 453 SQRIMITSEDS---KLRILDGV---DVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNS 525 (667)
Q Consensus 453 ~~~l~~~s~dg---~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~ 525 (667)
...|++++.|. .|.+||++ ...+.+++ |...|.++.|++.+ .+|++++.|+.|.+|+.++++.........
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 88888887765 79999987 35555655 89999999998877 899999999999999999988765544433
Q ss_pred cc-ceeEEccCCc-EEEEe
Q 005956 526 VR-SCEHFFSEGV-SVAVQ 542 (667)
Q Consensus 526 ~~-~~~~fs~dg~-~lav~ 542 (667)
.+ .-+.|+|..- .+|++
T Consensus 297 nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred cceeeeeecCCCcchhhhh
Confidence 32 3357777654 44443
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=4e-16 Score=149.03 Aligned_cols=233 Identities=17% Similarity=0.311 Sum_probs=170.8
Q ss_pred eccccceEEEEecCCC------eEEEEeCCCcEEEEecCC--CeE--eEEe------eCCCcEEEEEEeeCCCCEEEEEe
Q 005956 306 HGHKGDVLDLAWSNSN------YLLSCSMDKTVRMWQVGC--NQC--LNVF------DHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~------~l~s~s~Dg~I~iWd~~~--~~~--~~~~------~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
..|.-+++.+.|.|+. +|+|++ ..+|+|.+.. .+. ...+ .+..++++..|+..+.++|.+.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 3688899999999865 344444 3799999873 221 1111 26679999999999999999999
Q ss_pred cCCeEEEEecCCCeE----EEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 370 IDGKVRIWGVCEKRV----VDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~----~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
.|.+..|||+.++.. .++..|...|..++|...+ +.||+.+.||.+++||++......... .. .....+..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY--E~--p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY--ED--PSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe--cC--CCCCCcce
Confidence 999999999999743 3578899999999999865 578889999999999999765433222 11 11246788
Q ss_pred EEEEccCCCeEEEEEeCCC-cEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccc
Q 005956 445 GIQFSRDESQRIMITSEDS-KLRILDGVD---VIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg-~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.++|++.+.+++++-..|+ .|.|.|++. .+..+++ |.+.|+.++|.|.. .+|.++|+|..+.|||+...-...
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~ 324 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN 324 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccC
Confidence 9999999888888876664 799999873 3444444 89999999999864 689999999999999998653311
Q ss_pred ------cccccCccceeEEc-cCCcEEEEecCCC
Q 005956 520 ------SKQKNSVRSCEHFF-SEGVSVAVQWPGI 546 (667)
Q Consensus 520 ------~~~~~~~~~~~~fs-~dg~~lav~w~~~ 546 (667)
.......+..+.|+ ..+..+|+.++..
T Consensus 325 ~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 325 GEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred CCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 11233334445555 3455566655443
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.2e-17 Score=157.09 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=181.1
Q ss_pred cccceeeccccccEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 212 LYTSQEIQAHKGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
....+++++|.+.++.|+|.. .+..+.+|+.||+|++||+....
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~---------------------------------- 105 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA---------------------------------- 105 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch----------------------------------
Confidence 445678899999999999987 45689999999999999998632
Q ss_pred cCCCcccccCCcceeeeccc-cceEEEEecCCC-eEEEEe----CCCcEEEEecCCCeE-eEEee--CCCcEEEEEEeeC
Q 005956 290 IPDEVFQIEESPLQELHGHK-GDVLDLAWSNSN-YLLSCS----MDKTVRMWQVGCNQC-LNVFD--HHNYVTCVQFNPI 360 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~-~~V~~l~~s~~~-~l~s~s----~Dg~I~iWd~~~~~~-~~~~~--h~~~V~~l~f~p~ 360 (667)
+.....+.+|. .+..+++-...+ .++.|. .|-.|.+||++..+. +..+. |.+.|+++.|+|.
T Consensus 106 ---------e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 106 ---------ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred ---------hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 22334444554 456666665444 555553 356799999988765 66663 9999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeee-Ee---
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEK-VD--- 431 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~-~~--- 431 (667)
+.++|++||.||.|.+||+.... +.....+...|.++.|..++ +.|.+-+..++..+|+++.+...... ..
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~ 256 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS 256 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence 99999999999999999997643 44566778889999999877 56888999999999999877643321 00
Q ss_pred ecc-ccCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECC--------cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 432 FHD-RKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGV--------DVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 432 ~~~-~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~--------~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
... .+......+.... +|.+....++++. -+...++-+. +....+.+. |...|.++.|...+.+++||
T Consensus 257 ~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 257 ADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred hhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeecc
Confidence 000 0000111222222 2433344444443 5666655322 223333332 66778899998899999999
Q ss_pred eCCCcEEEEEcCC
Q 005956 502 GDDCRVYVWNYDE 514 (667)
Q Consensus 502 s~Dg~I~iWd~~~ 514 (667)
|+||.+.+|..++
T Consensus 335 GEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 335 GEDGLLQAWKVED 347 (376)
T ss_pred CCCceEEEEecCC
Confidence 9999999999744
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=166.71 Aligned_cols=246 Identities=17% Similarity=0.281 Sum_probs=190.8
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
+...-.+.|+|++|++.|+|++|+.||+.+|+|+.|..|.||.-.-
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---------------------------------- 84 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---------------------------------- 84 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc----------------------------------
Confidence 3345566789999999999999999999999999999999997652
Q ss_pred eecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE
Q 005956 288 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l 365 (667)
-..+ ..|.+.|.|+.|+|-. .|++|+.. ..-+|..+.. .+...+....|.+++|.. ||.+|
T Consensus 85 --------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqyl 147 (1081)
T KOG1538|consen 85 --------------EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYL 147 (1081)
T ss_pred --------------cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEE
Confidence 1112 3699999999999988 88888764 4667876533 233334566889999999 99999
Q ss_pred EEEecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCC-----CEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 366 ISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDG-----KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg-----~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
+.|-.+|+|.|-+-.....+. ..+...+|.+++|+|.. ..+++.....++.+|.+.+..... .+
T Consensus 148 alG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk--------~r 219 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK--------DR 219 (1081)
T ss_pred EEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc--------cc
Confidence 999999999998766554443 33467889999999953 578888888999999987543321 12
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.-+-.-.|+++.++| .+++.|+.|+.+.+|.-. .+..-........|..++..|++++++.|+.||+|..|++..
T Consensus 220 ~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 222345789999996 899999999999999743 333222222577899999999999999999999999999754
No 170
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=2.6e-15 Score=167.13 Aligned_cols=264 Identities=12% Similarity=0.174 Sum_probs=181.6
Q ss_pred cccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
.+-.+...|..|+..|..++.++.. .+++|||.||+|+||+........ +
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------------~-------------- 1086 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------------G-------------- 1086 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------------c--------------
Confidence 4455667788999999999998765 899999999999999988521110 0
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-------EeEEee---CCCcEEEEEE
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVFD---HHNYVTCVQF 357 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~~---h~~~V~~l~f 357 (667)
..+...++.--...+.++...+.+ .+|.++.||.|++.+++... +.+... ....|..-+|
T Consensus 1087 ---------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1087 ---------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred ---------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc
Confidence 011223333345678888888878 89999999999999987621 111111 2234555566
Q ss_pred eeCCCC-EEEEEecCCeEEEEecCCCeEE---EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956 358 NPIDDN-YFISGSIDGKVRIWGVCEKRVV---DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 358 ~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
...... .++.+..-+.|..||++..... +....++.|++++.+|.++++++|+..|.+.+||++=+... ..+...
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i-~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-LSWEHP 1236 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee-ecccCc
Confidence 554555 7888888899999999886643 34456788999999999999999999999999999954433 333332
Q ss_pred cccCcCCCCeEEEEEccCC---CeEEEEEe-CCCcEEEEECCcceeeEEeC-------------------CCCCCeEEEE
Q 005956 434 DRKKTSGNKITGIQFSRDE---SQRIMITS-EDSKLRILDGVDVIHKFKGL-------------------PKSGSQMSAS 490 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g---~~~l~~~s-~dg~I~iwd~~~~~~~~~~~-------------------~~~~~v~~v~ 490 (667)
. ..+|+.+..+|-- +..+.+++ ..+.|.+|++.+..+..... ++.-.....+
T Consensus 1237 ~-----~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1237 A-----RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred c-----cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee
Confidence 2 2667777766542 23444444 57899999976543332211 1111223344
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 491 FTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 491 ~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+..-+.++++|+.|..|+.||....+.
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCccc
Confidence 444567899999999999999988764
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=1.5e-15 Score=151.43 Aligned_cols=284 Identities=17% Similarity=0.236 Sum_probs=194.1
Q ss_pred cccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 222 ~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
..+|..+.|.++.. .|||||.|..|+||.+....... ...+ -.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-------------~~~~-----------------------V~ 56 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-------------GDMK-----------------------VE 56 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC-------------Ccee-----------------------EE
Confidence 35799999999877 99999999999999988632210 0001 12
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--------C-----C---eEeEEe-eCCCcEEEEEEeeCCC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--------C-----N---QCLNVF-DHHNYVTCVQFNPIDD 362 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--------~-----~---~~~~~~-~h~~~V~~l~f~p~d~ 362 (667)
.+..|..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.. .|...|..++|+| ++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence 356778999999999999999 99999999999999765 2 1 122222 3889999999999 99
Q ss_pred CEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-e-Eeeccc-cC-
Q 005956 363 NYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-K-VDFHDR-KK- 437 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~-~~~~~~-~~- 437 (667)
+++++++.|..+++||+..+++.. ..+|...+.-++|.|-++++++-+.|...+.+.+........ . ..+... ..
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999886 567888999999999999999999998777777765443322 1 011110 00
Q ss_pred ------------cCCCCeEEEEEccCCCeEEEEEeC----C-----CcEEEEECC---cceeeEEeCCCCCCeEEEEEcC
Q 005956 438 ------------TSGNKITGIQFSRDESQRIMITSE----D-----SKLRILDGV---DVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 438 ------------~~~~~I~~l~~sp~g~~~l~~~s~----d-----g~I~iwd~~---~~~~~~~~~~~~~~v~~v~~sp 493 (667)
+...-...++|+|+| .++++.+. + +..++++.. .+...+.. ...+...+.|+|
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~p 292 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSP 292 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeee
Confidence 011233467899997 56655431 2 234566533 22222111 233334444433
Q ss_pred ------------------CCCEEEEEeCCCcEEEEEcCCCCccccc--cccCccceeEEccCCcEEEEecCCC
Q 005956 494 ------------------TGKHIISIGDDCRVYVWNYDELCFPSSK--QKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 494 ------------------dg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
-+-.+|.+. .+.|+|||.++....... -+-...+-++|++||.++++++-+.
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 233345555 567999999886543221 1234455679999999999976544
No 172
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-15 Score=144.75 Aligned_cols=257 Identities=18% Similarity=0.269 Sum_probs=178.3
Q ss_pred eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEee-CCCCEEEEEecCCeEEEEe
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNP-IDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~iwd 378 (667)
.+|.+-|+++.|.+.| ++++|+.|++|+|||.... .+....+ |.+.|..+.|-+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3799999999999999 9999999999999997533 3444444 999999999964 5688999999999999996
Q ss_pred cCC-------Ce---EEEecccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeecc-------ccCcC
Q 005956 379 VCE-------KR---VVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-------RKKTS 439 (667)
Q Consensus 379 l~~-------~~---~~~~~~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-------~~~~~ 439 (667)
-.. .+ ...+.+.+..|+.++|.| -|-.+++++.||.+|||+....-. ...+.+.. ....+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCcccc
Confidence 521 11 223566788899999999 467889999999999999764321 11222211 12234
Q ss_pred CCCeEEEEEccCC--CeEEEEEeCC-----CcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCC
Q 005956 440 GNKITGIQFSRDE--SQRIMITSED-----SKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTG----KHIISIGDD 504 (667)
Q Consensus 440 ~~~I~~l~~sp~g--~~~l~~~s~d-----g~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~D 504 (667)
..+..|+.|+|.. ..+|++|+.+ +.++||... +....-....|..+|.+++|.|+- ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 4677889998752 2467777765 488888744 333333445689999999999973 579999999
Q ss_pred CcEEEEEcCCCCcccc--------ccccCccc-eeEEc-cCCcEEEEecCCCCcccccccCCCCCCcCccCcC
Q 005956 505 CRVYVWNYDELCFPSS--------KQKNSVRS-CEHFF-SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDN 567 (667)
Q Consensus 505 g~I~iWd~~~~~~~~~--------~~~~~~~~-~~~fs-~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~ 567 (667)
| |+||++........ ......+. ...|. .+|+.--+.|+-.+.. +.+.+.+++.+-|..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti---LsStGdDG~VRLWka 317 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI---LSSTGDDGCVRLWKA 317 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE---EeecCCCceeeehhh
Confidence 9 99999986431111 01111111 11132 3456666777776653 566667777777754
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=2.6e-16 Score=148.48 Aligned_cols=245 Identities=15% Similarity=0.269 Sum_probs=176.9
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
...|++|.+.|+++.|-.+++ |.+|..-|.|++|++++.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~---------------------------------------- 45 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE---------------------------------------- 45 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecC----------------------------------------
Confidence 345679999999999998875 999999999999999863
Q ss_pred ccccCCcceeee-ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE----------------------------
Q 005956 295 FQIEESPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV---------------------------- 345 (667)
Q Consensus 295 ~~~~~~~~~~l~-gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~---------------------------- 345 (667)
.++..+. .|...|+.+.--|++.|.+-+.|..+.+|++.-+..+..
T Consensus 46 -----r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 46 -----RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred -----ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence 3334444 355667777777766777777777777777654211110
Q ss_pred -------------------e-------eCCCcEEEEEEeeCCCC--EEEEEecCCeEEEEecCCCeEE-----------E
Q 005956 346 -------------------F-------DHHNYVTCVQFNPIDDN--YFISGSIDGKVRIWGVCEKRVV-----------D 386 (667)
Q Consensus 346 -------------------~-------~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~iwdl~~~~~~-----------~ 386 (667)
. ...+.+.|..+....+. +++.|..+|.|.+||+.++..+ .
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 0 01233455554332333 4667788999999999986322 2
Q ss_pred ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC--cceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 387 WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--DLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 387 ~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~--~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
...|..+|.++.|.+.-..=+.|+.+..+..|.+... .++.. .+.+. +..|..+..-||+ +.+++++-|+
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk------npGv~gvrIRpD~-KIlATAGWD~ 273 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK------NPGVSGVRIRPDG-KILATAGWDH 273 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec------CCCccceEEccCC-cEEeecccCC
Confidence 4567888999999987666778888888999988744 22222 22222 3568889999995 8999999999
Q ss_pred cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
+||||.-++........-|...|++++|+|+...+|++|.|++|-+|++
T Consensus 274 RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999997754333222337899999999999999999999999999986
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=3.3e-16 Score=159.06 Aligned_cols=191 Identities=17% Similarity=0.243 Sum_probs=162.1
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..-.+.+.+++|+..|++|.++-...|||+++..|.|.|-.+.+...
T Consensus 109 ~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--------------------------------- 155 (673)
T KOG4378|consen 109 RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--------------------------------- 155 (673)
T ss_pred HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---------------------------------
Confidence 33445677899999999999999999999999999999999886321
Q ss_pred cCCCcccccCCcceeeec-cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCE
Q 005956 290 IPDEVFQIEESPLQELHG-HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~g-h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~ 364 (667)
..+|.. ....|.-+.|++.. +|.+++.+|.|.+||+....++..+. |..+...|+|+|.+..+
T Consensus 156 ------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 156 ------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred ------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 222322 23456688999877 77799999999999999888877764 99999999999988999
Q ss_pred EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
|++.+.|.+|.+||+...+.........+.++++|.++|.+|++|+..|.|..||++..+.+...+..+. ..|+
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~------~sVt 297 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD------ASVT 297 (673)
T ss_pred EEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc------ccee
Confidence 9999999999999999888887777788899999999999999999999999999998888776555544 6699
Q ss_pred EEEEccC
Q 005956 445 GIQFSRD 451 (667)
Q Consensus 445 ~l~~sp~ 451 (667)
+++|-|.
T Consensus 298 ~vafq~s 304 (673)
T KOG4378|consen 298 RVAFQPS 304 (673)
T ss_pred EEEeeec
Confidence 9999886
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1e-16 Score=164.48 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=170.4
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
.+.++-+.++|.||+|.|+|+.|+.||.+||+|+.|-.+.|||.-.
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~---------------------------------- 81 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE---------------------------------- 81 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----------------------------------
Confidence 4456777889999999999999999999999999999999999874
Q ss_pred eecCCCcccccCCcceee-eccccceEEEEecCCC---eEEEEeCCCcEEEEecCCC----------eEeEEee-CCCcE
Q 005956 288 VVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCN----------QCLNVFD-HHNYV 352 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~----------~~~~~~~-h~~~V 352 (667)
.++++.+ .||...|.++.|-|.. .+++|+.|+.|+++|+... .....+. |...|
T Consensus 82 -----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 -----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRV 150 (758)
T ss_pred -----------cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhh
Confidence 3444444 4999999999998843 8999999999999999741 2233333 88899
Q ss_pred EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-----------ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEe
Q 005956 353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-----------WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA 420 (667)
Q Consensus 353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-----------~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~ 420 (667)
.-|+-.|...+.|.+++.||+++-||++...... .....-...++.++| +..+|++|+.+...++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999999666999999999999999998733211 111223467889999 4578999999999999997
Q ss_pred cCCcceeeeEeeccccCcCCCCeEEEE-EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956 421 SGNDLKLEKVDFHDRKKTSGNKITGIQ-FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 499 (667)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~-~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 499 (667)
+........-... .........++. |+|.+ + ...+|.+. . ....++.+.|+|+|.-|+
T Consensus 231 Rr~lks~~s~~~~--~~~pp~~~~cv~yf~p~h---l--kn~~gn~~--------~------~~~~~t~vtfnpNGtElL 289 (758)
T KOG1310|consen 231 RRVLKSFRSDGTM--NTCPPKDCRCVRYFSPGH---L--KNSQGNLD--------R------YITCCTYVTFNPNGTELL 289 (758)
T ss_pred hhhccCCCCCccc--cCCCCcccchhheecCcc---c--cCcccccc--------c------ceeeeEEEEECCCCcEEE
Confidence 5332221100000 000011122232 33432 1 11111110 0 112357789999998776
Q ss_pred EEeCCCcEEEEEcCCCCcc
Q 005956 500 SIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 500 sgs~Dg~I~iWd~~~~~~~ 518 (667)
..-..-.||++|+..++.+
T Consensus 290 vs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 290 VSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EeeCCeEEEEEeecCCCCc
Confidence 6555568999999877653
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.3e-15 Score=163.87 Aligned_cols=273 Identities=15% Similarity=0.182 Sum_probs=190.6
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.++-..+.|+|-...++++.+.-.|+|||.+.+...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-------------------------------------------- 1099 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-------------------------------------------- 1099 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCcee--------------------------------------------
Confidence 335667889999999999998889999999864321
Q ss_pred ceeee---ccccceEEEEecCCC---eEEEEeCCCcEEEEec-C----CCeEeEEee--------CCCcEEEEEEeeCCC
Q 005956 302 LQELH---GHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQV-G----CNQCLNVFD--------HHNYVTCVQFNPIDD 362 (667)
Q Consensus 302 ~~~l~---gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~-~----~~~~~~~~~--------h~~~V~~l~f~p~d~ 362 (667)
..|. .....|+++.+-... ++++|+.||.||||+- . +.+.+..+. ..+.-.-+.|....|
T Consensus 1100 -~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1100 -NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred -ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC
Confidence 1111 123568888886532 8999999999999963 2 223333321 111114467877444
Q ss_pred CEEEEEecCCeEEEEecCCCeEEEe--cccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 363 NYFISGSIDGKVRIWGVCEKRVVDW--ADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~~~~~--~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+|++++.-..|+|||....+++.- ......|+++.-+. .|+.+++|..||.+++||.+......... ..+.|
T Consensus 1179 -~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~----~~R~h 1253 (1387)
T KOG1517|consen 1179 -HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC----VYREH 1253 (1387)
T ss_pred -eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce----eeccc
Confidence 555555578999999999887753 33445577765443 57999999999999999998765432211 12233
Q ss_pred CCC--eEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceee-EEeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 440 GNK--ITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK-FKGLPK---SGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 440 ~~~--I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~-~~~~~~---~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
... |..+.+.+.|-..|++++.+|.|++||++. .... +....| ++..+++..++....||+|+. +.|+||++
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 344 999999998766899999999999999875 2222 222112 235899999999999999998 99999999
Q ss_pred CCCCcccc-------ccccCccceeEEccCCcEEEEecCC
Q 005956 513 DELCFPSS-------KQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 513 ~~~~~~~~-------~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
........ .......+|++|+|.-..+|++..+
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 87654322 2344566899999998888887443
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=8.3e-14 Score=149.01 Aligned_cols=275 Identities=26% Similarity=0.446 Sum_probs=204.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
......+..|...|..++|+|+++++++++. |+.+++|++..
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 187 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT------------------------------------- 187 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------------------------------------
Confidence 3455678899999999999999999999986 99999999984
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeE-Ee-eCCCcEEEEEEeeCCCCEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLN-VF-DHHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~-~~-~h~~~V~~l~f~p~d~~~l~ 366 (667)
...+..+.+|...|.+++|+|++ .++ +++.|++|++||...+..+. .+ .|...+ ...|+| ++.+++
T Consensus 188 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 257 (466)
T COG2319 188 --------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLA 257 (466)
T ss_pred --------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEE
Confidence 24466677799999999999988 344 44999999999998787777 34 366665 448999 778899
Q ss_pred EEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 367 SGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
+++.|+.+++|++..... .....|...+.++.|.|++..+++++.++.+.+|+........... ...+...+.
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 332 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----LKGHEGPVS 332 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----ecccCCceE
Confidence 999999999999987653 2334667889999999988888889999999999887665543322 122334689
Q ss_pred EEEEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcccccc
Q 005956 445 GIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCFPSSKQ 522 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~~~~~~~~ 522 (667)
.+.|.++ ...++.+ ..|+.+.+|+........... ....+..+.+++ ...++. +..++.+.+|+...........
T Consensus 333 ~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCC-CCEEEEeecCCCcEEeeecCCCceeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeecc
Confidence 9999333 2345544 688999999987655222221 222388899988 544444 6889999999999887654433
Q ss_pred cc-CccceeEEccCCcEEEE
Q 005956 523 KN-SVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 523 ~~-~~~~~~~fs~dg~~lav 541 (667)
.. .......+.+++..++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLAS 429 (466)
T ss_pred CCCCcEEEEEECCCCcEEEE
Confidence 33 44445577787777776
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=1e-13 Score=148.26 Aligned_cols=273 Identities=26% Similarity=0.438 Sum_probs=197.0
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+..|...|.++.|.+.+..++.++.|+.+.+|+.....
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------------------------- 98 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----------------------------------------- 98 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-----------------------------------------
Confidence 566899999999999999999999999999999988631
Q ss_pred ccCCcceeeeccc-cceEEEEe-cCCC--eEEEEe-CCCcEEEEecCC-CeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956 297 IEESPLQELHGHK-GDVLDLAW-SNSN--YLLSCS-MDKTVRMWQVGC-NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 297 ~~~~~~~~l~gh~-~~V~~l~~-s~~~--~l~s~s-~Dg~I~iWd~~~-~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
..+..+.++. ..+..+.+ ++++ .++..+ .|+.+.+|++.. ......+ .|...|..+.|+| ++.++++++
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 174 (466)
T COG2319 99 ---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGS 174 (466)
T ss_pred ---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecC
Confidence 1233344432 35666666 6666 344434 499999999997 5555444 5999999999999 888888888
Q ss_pred c-CCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 370 I-DGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 370 ~-Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
. |+.+++|++..+..+. ...|...+.+++|+|++. .++.++.|+.+++||......... .+. .+.... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~----~~~~~~-~~ 247 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLS----GHSDSV-VS 247 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecC----CCCcce-eE
Confidence 5 9999999999866554 555789999999999998 444458999999998774433321 111 122332 22
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--- 522 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--- 522 (667)
.|+|++ .++++++.|+.+++|+...... ......|...+.++.|+|++..+++++.|+.+.+|+...........
T Consensus 248 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 326 (466)
T COG2319 248 SFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326 (466)
T ss_pred eECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc
Confidence 899996 7888999999999999874332 22214478899999999999999999999999999888776433321
Q ss_pred ccCccceeEEccCCcEEEEe
Q 005956 523 KNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 523 ~~~~~~~~~fs~dg~~lav~ 542 (667)
.......+.|.+++..++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 327 HEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred cCCceEEEEECCCCCEEEEe
Confidence 22234445553332444444
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=4e-15 Score=161.56 Aligned_cols=248 Identities=18% Similarity=0.182 Sum_probs=181.7
Q ss_pred ccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
-...|+|++|+|. ..+||.|..+|.|.+||+..+.... ..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------------------------~s 281 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------------------------PS 281 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------------------------Cc
Confidence 4578999999994 5688888899999999998632110 00
Q ss_pred CcceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeE------eEEe-------eCCCcEEEEEEeeCCCC
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQC------LNVF-------DHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~------~~~~-------~h~~~V~~l~f~p~d~~ 363 (667)
..-.....|..+|+.+.|..+- -+++++.||.|+.|+++.-.. .... .....++++.|.+.+.+
T Consensus 282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~ 361 (555)
T KOG1587|consen 282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN 361 (555)
T ss_pred ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc
Confidence 0112234689999999997543 599999999999998764322 1111 13347899999999999
Q ss_pred EEEEEecCCeEEEEec---CCCe------EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc
Q 005956 364 YFISGSIDGKVRIWGV---CEKR------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD 434 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl---~~~~------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~ 434 (667)
.|+.|+.+|.|.--.- .... ......|.+.|+++.++|-+..++..+.|-+++||.......+...+
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---- 437 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---- 437 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----
Confidence 9999999999887333 2222 22355678899999999987666665559999999987333332211
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
..+...+++++|||.-+..++++..||.|.|||+.. ....... +......+.|+++|+.|++|...|.|++|
T Consensus 438 --~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 438 --DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred --hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEE
Confidence 222356999999999878999999999999999762 2222222 35566778889999999999999999999
Q ss_pred EcCCC
Q 005956 511 NYDEL 515 (667)
Q Consensus 511 d~~~~ 515 (667)
++...
T Consensus 514 ~l~~~ 518 (555)
T KOG1587|consen 514 KLSES 518 (555)
T ss_pred EcCch
Confidence 99754
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=3.6e-14 Score=149.49 Aligned_cols=248 Identities=13% Similarity=0.212 Sum_probs=161.4
Q ss_pred ccccEEEEEEcCCCCEEEEEE-CCCcEEEEEcCC-CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 221 HKGCIWTLKFSPDGRYLASGG-EDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs-~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
+.+....++++|++++|++++ .++.|.+|++.. +...
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~----------------------------------------- 71 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT----------------------------------------- 71 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------------------------------------
Confidence 345677899999999987765 478899999863 1110
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCC----eEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cC
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGS-ID 371 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~D 371 (667)
.+... ........++|+|++ +|++++ .++.|.+|++.+. +.+..+.+.....+++++| +++++++++ .+
T Consensus 72 --~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~ 147 (330)
T PRK11028 72 --FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKE 147 (330)
T ss_pred --Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCC
Confidence 00111 112245679999999 666555 4889999999743 2333333445678889999 888776554 56
Q ss_pred CeEEEEecCCC-eEEE------ecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCC--cceee-eEeeccccCcCC
Q 005956 372 GKVRIWGVCEK-RVVD------WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGN--DLKLE-KVDFHDRKKTSG 440 (667)
Q Consensus 372 g~v~iwdl~~~-~~~~------~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~--~~~~~-~~~~~~~~~~~~ 440 (667)
+.|.+||+.+. .+.. .......+..+.|+|+|++++++.. ++.|.+|++... ..... .+..........
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 99999999763 2211 1122345678999999999988876 899999999742 22211 121111111112
Q ss_pred CCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcc--eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 005956 441 NKITGIQFSRDESQRIMITS-EDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE 514 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~--~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~ 514 (667)
.....+.++|+| ++++++. .++.|.+|++... ...+... ........+.|+|+|++|+++.. +++|.+|+++.
T Consensus 228 ~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 228 RWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 233468999997 6666664 5789999987421 1122211 11234567899999999998875 88999998853
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.3e-14 Score=153.67 Aligned_cols=284 Identities=17% Similarity=0.242 Sum_probs=203.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|+-.++|.++||+++++|+|..||.|.||.--... ...
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-----------------------------------------~~~ 241 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-----------------------------------------DDS 241 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc-----------------------------------------ccc
Confidence 577789999999999999999999999999643200 011
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
...+.++=|...|.+++|+++| +|++|+..|.+-+|.+++++....-.-..+|..+.++| |+.+.+....|..|.+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 2356677899999999999999 99999999999999999999433335888999999999 999999889999999997
Q ss_pred cCCCeEEE----e--------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccC---cCCCC
Q 005956 379 VCEKRVVD----W--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK---TSGNK 442 (667)
Q Consensus 379 l~~~~~~~----~--------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~---~~~~~ 442 (667)
..+..... + ....+-.+.++++|.-+.++..+..|.|.+||+-+.....+ .+....... .+.-.
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 75544221 1 11245578899999778889999999999999988776644 222221111 12235
Q ss_pred eEEEEEccCCCeEEEEEe--------CCC--cEEEEECCcceee-----EEeCCCCCCeEEEEEc-CCCC-EEEEEeCCC
Q 005956 443 ITGIQFSRDESQRIMITS--------EDS--KLRILDGVDVIHK-----FKGLPKSGSQMSASFT-TTGK-HIISIGDDC 505 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s--------~dg--~I~iwd~~~~~~~-----~~~~~~~~~v~~v~~s-pdg~-~l~sgs~Dg 505 (667)
++.++.+..| .++++.- .|| .+++|-.....+. ....+|...+...++. +... ..++++.||
T Consensus 401 itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 401 ITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred eeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 6777777774 7777763 333 5677864432222 2234576666666663 3333 789999999
Q ss_pred cEEEEEcCCCCccc------c-----ccccCccceeEEccCCcEEEEecCCC
Q 005956 506 RVYVWNYDELCFPS------S-----KQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 506 ~I~iWd~~~~~~~~------~-----~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.++||-+.+.+... . ...+......+|+-||..||++..+.
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~ 531 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT 531 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE
Confidence 99999995433211 1 12345555679999999999985543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=8e-15 Score=140.22 Aligned_cols=245 Identities=13% Similarity=0.216 Sum_probs=176.5
Q ss_pred cccccEEEEEEcCCCC-----EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 220 AHKGCIWTLKFSPDGR-----YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~-----~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.|.-+++.+.|.|+.. +|||.+. .+|+|.+...+... .. ..+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~------------------~~-------------~~~ 140 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV------------------EL-------------QSV 140 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce------------------eh-------------hhh
Confidence 6889999999999863 6777654 69999987421100 00 000
Q ss_pred ccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe----EeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
-....-..+.+++++..|+.-. ++.+++-|.|..|||++++. ..+.+.|...|..++|....-+.|++.
T Consensus 141 -----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 141 -----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred -----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEe
Confidence 0001122456789999998754 88999999999999999873 344557999999999998566899999
Q ss_pred ecCCeEEEEecCCCe---EEEecc-cCCceEEEEEee-CCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKR---VVDWAD-VRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~---~~~~~~-~~~~v~~v~~sp-dg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.||.||+||++... ++.-.. ...+...++|++ |-+++|+-. ....|.+.|++........ ...|.+.
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~------L~~H~a~ 289 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR------LRNHQAS 289 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh------hhcCccc
Confidence 999999999998754 333222 256788899988 456777644 4457999999976655432 2334689
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----eEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYV 509 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~i 509 (667)
|++++|.|..+.+|++++.|.++.|||+..... .+......+.|..+.|++ .+.+|+.+.. +.+.|
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 999999999889999999999999999875433 111122467899999985 5677877763 44443
No 183
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.3e-15 Score=151.26 Aligned_cols=192 Identities=26% Similarity=0.389 Sum_probs=148.0
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceee
Q 005956 226 WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 305 (667)
Q Consensus 226 ~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (667)
.+++|+.+|..|++|+.||++|||++.+. ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------------------------------------------~t~l~e 182 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------------------------------------------LTILEE 182 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---------------------------------------------hhhhhh
Confidence 68999999999999999999999997642 334556
Q ss_pred eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCC---CEEEE--EecCCeEEE
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDD---NYFIS--GSIDGKVRI 376 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~---~~l~s--gs~Dg~v~i 376 (667)
..|.+.|.+|.|+||+ .|++-+.| ..+||++.++.++.... .......+.|+. ++ .+++. ...-+.|+.
T Consensus 183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeE
Confidence 6899999999999999 99999999 99999999997766654 333566778887 55 33333 334456777
Q ss_pred EecCCC------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 377 WGVCEK------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 377 wdl~~~------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
||+... +..+.......|++++.++||+++++|+.+|.|-+|+..+.+.... -+..|...||.++|+|
T Consensus 261 ~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~------vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 261 CDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY------VKEAHLGFVTGLTFSP 334 (398)
T ss_pred EEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe------ehhhheeeeeeEEEcC
Confidence 765432 1222333456799999999999999999999999999876554322 2455678999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECC
Q 005956 451 DESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~ 471 (667)
+ .++++..+.+.++.|..+.
T Consensus 335 d-sr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 335 D-SRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred C-cCcccccccCCceeEEEEe
Confidence 9 5889999999888887643
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=9.7e-15 Score=149.77 Aligned_cols=266 Identities=15% Similarity=0.280 Sum_probs=172.7
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecc-cCCCCceeecCCCcccc-
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGK-KKSSHVPVVIPDEVFQI- 297 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 297 (667)
.|...|.|+.|+.+...+.++.++..+.-|++.+.........++. +......+...... +......+...+..+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df-~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDF-VPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCccc-CCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3666677999998877776666555555556554322111111110 00000000000000 00111111111111111
Q ss_pred --cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 298 --EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 298 --~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
..+.-.....|.+.|.+-.|+|+| -|++++.||.|++|.-...-.....+...+|.|++|.|+..+.+++.+ +.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~ 168 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHI 168 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeE
Confidence 223345567899999999999999 999999999999998543222222357789999999995555555433 567
Q ss_pred EEEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 375 RIWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 375 ~iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
.|=.+.. .++++|..|.+.|.++.|++..+.+++|+.|-..++||..+..+-. ...|..+|++++|.|+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--------S~~~ey~ITSva~npd-- 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--------SAAEEYAITSVAFNPE-- 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--------CChhccceeeeeeccc--
Confidence 7766654 5678999999999999999999999999999999999987654321 2345689999999998
Q ss_pred eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
..++.++.. +++ +.. ++.+.|..++||+||..+++|...|.+.+=
T Consensus 239 ~~~~v~S~n-t~R----------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TAR----------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eee----------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 455555542 333 222 367899999999999999999988876553
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=143.13 Aligned_cols=298 Identities=18% Similarity=0.241 Sum_probs=204.8
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC------CCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~------~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
.+.+.+|.+.|.+|.|+.++ +|++|+.|..+++|+++ +.+++.+.. |...|.|++|.. ...++++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcc
Confidence 34567999999999999988 99999999999999985 346666665 668999999998 788999999999
Q ss_pred eEEEEecCCCeEEEecccCC---ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 373 KVRIWGVCEKRVVDWADVRD---VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~---~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+|...|+.+.+.+....+.. .|+.+..+|-.+.|++.+.+|.+.+||.+........+.+.. .+.....+.|+
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN----~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN----SGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC----CCccceeeeec
Confidence 99999999999888776655 899999999999999999999999999998765544333222 23668889999
Q ss_pred cCCCeEEEEEeCCCcEEEEECCccee---e---EEeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIH---K---FKGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~---~---~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 522 (667)
|..+.+|++.+..+-+-+||.+.... . +.+... ...-+++.|+|+|..+.+--....-.+||+....+...+.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 99888999999999999999774322 1 122111 2234678999999998887666666778887765544321
Q ss_pred c--------cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCc-----------------cCcCCCCCCcccCC
Q 005956 523 K--------NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQ-----------------KWDNLETAPWIRDS 577 (667)
Q Consensus 523 ~--------~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~-----------------~w~~~~~~~~~~~~ 577 (667)
. ......++|-.|-. ++.+...-+--+..++.....+.|. -...+..+.-.+..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 1 11122335655433 5544333322221111111111110 01122233334556
Q ss_pred CcccCCCCCCC-CCCCCCCCCCCCCcCCC
Q 005956 578 ERFSLGSWFSN-DGPCRGSATWPAEKLPL 605 (667)
Q Consensus 578 ~~fS~~~~~~~-~g~~~g~~~w~~~~~~~ 605 (667)
.+|++..-++. .|-.+.-..|...|+|.
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~r~P~ 391 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDHRLPW 391 (609)
T ss_pred eeecCCcceEeccchhhheeccccccCCc
Confidence 78888765544 33333447798888773
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.7e-14 Score=133.41 Aligned_cols=245 Identities=14% Similarity=0.221 Sum_probs=175.4
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..|.+-+++|.++||+.|..+|.|.+..+.+...... . .....++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~------------------------~~gk~~i 55 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------E------------------------PPGKLKI 55 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------C------------------------CCCCcce
Confidence 3577778999999999999999999999886321100 0 0013445
Q ss_pred eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeE----eEEe-----eC-----CCcEEEEEEeeCCCCEEEEE
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQC----LNVF-----DH-----HNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~----~~~~-----~h-----~~~V~~l~f~p~d~~~l~sg 368 (667)
..+++|.++|..++|+ +.+|++|+. |.|+-|....... .... .| -..|+++-..| ..+-++.+
T Consensus 56 v~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEe
Confidence 6668999999999998 446777665 9999987643211 1111 12 23688999999 66666666
Q ss_pred ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc---cCc-CCCCe
Q 005956 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---KKT-SGNKI 443 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---~~~-~~~~I 443 (667)
+.|+.++.||+++|++.. +.+|.+.+.++.-......+++|+.||++++||+++.+.... +....+ .+. .+..|
T Consensus 133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE-eccccChhhcCcccCcee
Confidence 789999999999999875 788999999999866566899999999999999998876543 221111 111 23557
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.+++-+.+ ++++|+ ...+.+|.++ +..+.|.. ..++..+.|- .+.++++++.+.|.-|.+...
T Consensus 212 gala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 212 GALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEEeccCc---eEEecC-CCceeEEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE
Confidence 77777654 555554 4579999988 45555554 4567777884 457888888889999987653
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=2.1e-14 Score=137.19 Aligned_cols=255 Identities=15% Similarity=0.264 Sum_probs=182.3
Q ss_pred cceeeccccccEEEEEEcCCC-CEEEEEECC-------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDG-RYLASGGED-------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg-~~Latgs~D-------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
+.+.|..|.+.|+.++-+|-. +.|+|+..+ -.+.||.+....... ..
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-------------------------~~ 109 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-------------------------NS 109 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-------------------------cc
Confidence 345667899999999999954 566666442 236678776421100 00
Q ss_pred ceeecCCCcccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE-eEEe------eCCCcEEEEE
Q 005956 286 VPVVIPDEVFQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC-LNVF------DHHNYVTCVQ 356 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~-~~~~------~h~~~V~~l~ 356 (667)
..-..+..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. +..+ .+....++-+
T Consensus 110 -----------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~ 177 (370)
T KOG1007|consen 110 -----------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA 177 (370)
T ss_pred -----------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc
Confidence 0012233333 455689999999988 666554 88999999987765 3333 2566788899
Q ss_pred Eee-CCCCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 357 FNP-IDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 357 f~p-~d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
|+| .+++.+++. .|+++..||+++..... -..|...|..+.|+|+-+ +|++++.||.|+|||.+..+.+.....
T Consensus 178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~- 255 (370)
T KOG1007|consen 178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP- 255 (370)
T ss_pred cCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-
Confidence 999 567777665 58999999999876553 234667899999999876 567788999999999998877665333
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-------------------------------ceeeEEeCC
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------------------------------VIHKFKGLP 481 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-------------------------------~~~~~~~~~ 481 (667)
.|...|.++.|+|.-.++|++++.|..|.+|.... .+.++ ..
T Consensus 256 -----~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--de 328 (370)
T KOG1007|consen 256 -----GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--DE 328 (370)
T ss_pred -----CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--cc
Confidence 34578999999998778999999999999995321 01122 23
Q ss_pred CCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCC
Q 005956 482 KSGSQMSASFTTTGKH-IISIGDDCRVYVWNYDE 514 (667)
Q Consensus 482 ~~~~v~~v~~spdg~~-l~sgs~Dg~I~iWd~~~ 514 (667)
|...|.+++||.-..+ +|+-+.||.+.|=++..
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 7889999999876666 56779999998876654
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.63 E-value=8.2e-14 Score=135.19 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=149.4
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCC--------------eEeEEeeCCCcEEEEEEee------CCCCEEEEEec
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCN--------------QCLNVFDHHNYVTCVQFNP------IDDNYFISGSI 370 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~--------------~~~~~~~h~~~V~~l~f~p------~d~~~l~sgs~ 370 (667)
...+.|+||| .|++-+.|..+++|++... .....+.....|....|-+ .+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568899999 9999999999999997421 1112223556777777763 17789999999
Q ss_pred CCeEEEEecCCCeEEE---ecccCCc---eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--eEeeccccCcCCCC
Q 005956 371 DGKVRIWGVCEKRVVD---WADVRDV---ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRKKTSGNK 442 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~---~~~~~~~---v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--~~~~~~~~~~~~~~ 442 (667)
+.-|++||.-++++.. ..+|.+. ..+++|+|||..|++|. ...|++||+........ ....++ +....+-
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-cccccce
Confidence 9999999999998763 3334333 56899999999998875 56999999943222222 111111 2334577
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCF 517 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~ 517 (667)
|.+++|+|-....+++++....+-||.-......+...+|.+.|+.+.|.++|+.|++|+. |-.|..||+.....
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 8999999998889999999888777754433333333458999999999999999999975 67899999986543
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=7.1e-13 Score=139.66 Aligned_cols=228 Identities=12% Similarity=0.104 Sum_probs=149.4
Q ss_pred cceEEEEecCCC-eEEEE-eCCCcEEEEecC-CCeE--eEEeeCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCC-C
Q 005956 310 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVG-CNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE-K 382 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~-~~~~--~~~~~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~-~ 382 (667)
+....++++|++ +|+.+ ..++.|.+|++. +++. +...........++|+| +++++++++. ++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 456778999998 66554 458899999997 3332 23333444677899999 8888887764 78999999974 2
Q ss_pred e---EEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee----eEeeccccCcCCCCeEEEEEccCCCe
Q 005956 383 R---VVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 383 ~---~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~----~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
. .+........+..++++|+|+++++++ .++.|.+||+.+...... ..... .+.....+.|+|+| +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-----~g~~p~~~~~~pdg-~ 187 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-----EGAGPRHMVFHPNQ-Q 187 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-----CCCCCceEEECCCC-C
Confidence 2 222222334567789999999887655 568999999976332110 11111 12445689999997 5
Q ss_pred EEEEEeC-CCcEEEEECCc----c--eeeEEeCC----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc--ccc
Q 005956 455 RIMITSE-DSKLRILDGVD----V--IHKFKGLP----KSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDELCF--PSS 520 (667)
Q Consensus 455 ~l~~~s~-dg~I~iwd~~~----~--~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~--~~~ 520 (667)
+++++.. ++.|.+||+.. . ...+...+ +......+.|+|+|++|+++.. ++.|.+|+++.... ...
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 6655554 89999999752 1 22222111 1123346889999999999864 68999999965321 111
Q ss_pred cc--ccCccceeEEccCCcEEEEecC
Q 005956 521 KQ--KNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 521 ~~--~~~~~~~~~fs~dg~~lav~w~ 544 (667)
.+ .......+.|+|||++|.++-.
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEc
Confidence 11 1122335789999999999754
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.5e-14 Score=138.12 Aligned_cols=193 Identities=14% Similarity=0.218 Sum_probs=151.1
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC-CCCEEEEEecCCeEEEEecCCCeEE---EecccC-Cce
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKRVV---DWADVR-DVI 394 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~-~~v 394 (667)
..++++-..|+|++||..+++.+..|+ +...+..+.|... .+..+++|+.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 368888889999999999999999996 7778888888763 4678999999999999999986532 344443 466
Q ss_pred EEEEEeeCCCEEEEEec----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 395 SAICYIPDGKGFIVGSI----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 395 ~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
.+++..-.++.+++|+. +-.+.+||++..+..... -...|...||+++|+|.++++|++|+.||-|.|||+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-----~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-----LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-----hhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 77777667888888864 568999999987664321 134567899999999999999999999999999998
Q ss_pred Ccc---eeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 005956 471 VDV---IHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 471 ~~~---~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
... -.......+...|..+.|..++ +.|.+-+.....++|+++.+...
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 632 1111222356779999997776 56888889999999999988743
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.4e-14 Score=151.68 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=138.1
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cCCeEE-
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVR- 375 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~- 375 (667)
...+..|...+.+.+|+|+| .|+.++.+ ..|++||+.+++.............++|+| |++.|+.++ .+|.+.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEE
Confidence 34566788889999999999 77776644 369999999886544333333445789999 898887764 677655
Q ss_pred -EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 376 -IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 376 -iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
+||+.++....+..+...+..++|+|||+.|+..+ .+|...||++.........+ .. .. ....|+|+|
T Consensus 275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~----~~--~~~~~SpDG- 344 (429)
T PRK01742 275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GG----RG--YSAQISADG- 344 (429)
T ss_pred EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cC----CC--CCccCCCCC-
Confidence 55777787777777777788999999999887665 57888999876433322211 11 12 357899997
Q ss_pred eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
++|+.++.+ .+.+||+.......... . .....++|+|||++|+.++.++.+.+|.+
T Consensus 345 ~~ia~~~~~-~i~~~Dl~~g~~~~lt~-~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 345 KTLVMINGD-NVVKQDLTSGSTEVLSS-T-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CEEEEEcCC-CEEEEECCCCCeEEecC-C-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 566666665 46669976543222111 1 12356789999999999999998888875
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.62 E-value=8.4e-14 Score=135.18 Aligned_cols=241 Identities=19% Similarity=0.334 Sum_probs=182.1
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
--..+|+|.+|++|+..+|.+.....|.||.....+ ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------------------------~w 45 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------------------------LW 45 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------------------------Cc
Confidence 345789999999999999999999999999887522 13
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec-CCCe---EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV-GCNQ---CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~-~~~~---~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
++.+++..|...|+.+.|+|.. .|++|+.|..-+||.. ..++ .+..+.++..++++.|+| .++.|++|+....|
T Consensus 46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~i 124 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLI 124 (361)
T ss_pred eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEE
Confidence 5688999999999999999988 9999999999999998 4443 233446999999999999 99999999999999
Q ss_pred EEEecCCCeEE-----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--------eEee---ccccCc
Q 005956 375 RIWGVCEKRVV-----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KVDF---HDRKKT 438 (667)
Q Consensus 375 ~iwdl~~~~~~-----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--------~~~~---~~~~~~ 438 (667)
.||-.+...-- .-..++..|+++.|+|++-++++|+.|+.+++|..--...... .+.+ ......
T Consensus 125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 99988765532 2345677899999999999999999999999997531111000 0000 001113
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
..+.|..+.|+|+| ..|+-.+.|+.+.+-|.....+.. ......-+..++.|-.+ +.++.++.|.
T Consensus 205 ~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~c 270 (361)
T KOG1523|consen 205 SGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYDC 270 (361)
T ss_pred CCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCCC
Confidence 46889999999997 889999999999999966443111 11112366777777544 4566666664
No 193
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.2e-14 Score=144.33 Aligned_cols=295 Identities=15% Similarity=0.184 Sum_probs=189.3
Q ss_pred cccccccccccceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956 204 KKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK 282 (667)
Q Consensus 204 k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (667)
+.......+.+.|.| .|...-+.|..+|||+|| |||..--.|++||+.+.....-. +.+.. .-.+.+....
T Consensus 34 kd~~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-hlDae------~V~feiLsDD 105 (703)
T KOG2321|consen 34 KDVDYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-HLDAE------VVDFEILSDD 105 (703)
T ss_pred hchHHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-ccccc------ceeEEEeccc
Confidence 333344445555666 588899999999999975 55667889999999864321100 00000 0000000000
Q ss_pred CCCceeecCCCcccccCCc-ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956 283 SSHVPVVIPDEVFQIEESP-LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP 359 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~-~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 359 (667)
-...++.-.+....+..+. .+.-.--...-.+++++.-. -|+.++....|+=++++.|..+..|. ....++++..++
T Consensus 106 ~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred hhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 0000000000000000000 00000001223455665433 45555555678889999999999997 447999999999
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeEEEec-------ccCC-----ceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRVVDWA-------DVRD-----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~-------~~~~-----~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~ 427 (667)
-..+|++|+.+|.|-+||.+....+... .+.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+...
T Consensus 186 -~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 186 -EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred -ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 7779999999999999999987654322 1222 39999999999999999999999999999877654
Q ss_pred eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956 428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRV 507 (667)
Q Consensus 428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I 507 (667)
..-+ ...-+|..+.|.+.+..-.+++.....++|||-.+........ ....+..+|+-|++.+++++-+++.+
T Consensus 265 ~kdh------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 265 VKDH------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred eccc------CCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcc
Confidence 3211 1236899999988754555666666789999966544433332 45668999999999999999999888
Q ss_pred EEEEcCC
Q 005956 508 YVWNYDE 514 (667)
Q Consensus 508 ~iWd~~~ 514 (667)
..|=+..
T Consensus 338 ~~yyiP~ 344 (703)
T KOG2321|consen 338 HTYYIPS 344 (703)
T ss_pred eeEEccc
Confidence 7776654
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=6.3e-13 Score=131.55 Aligned_cols=236 Identities=12% Similarity=0.182 Sum_probs=173.3
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
...|..+.|+.|...|..|+.|| .++|.......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k--------------------------------------------- 38 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK--------------------------------------------- 38 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------------------------
Confidence 44677888999999999999998 67887764110
Q ss_pred ceeeeccccceEEEEecCCCeEEEEeCC--CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 302 LQELHGHKGDVLDLAWSNSNYLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~~l~s~s~D--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
..........|.-+-|+.+ +++..+.+ +.+++.++..+..+..+.....|.++.++. +.|+++-.+ .|+|||+
T Consensus 39 ~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI 113 (391)
T KOG2110|consen 39 CFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---KRLVVCLEE-SIYIYDI 113 (391)
T ss_pred hhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---ceEEEEEcc-cEEEEec
Confidence 0000111234555666644 33333333 459999999999999999999999999964 556665544 4999999
Q ss_pred CCCeEEEec----ccCCceEEEEEeeCCCEEEEE--ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 380 CEKRVVDWA----DVRDVISAICYIPDGKGFIVG--SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 380 ~~~~~~~~~----~~~~~v~~v~~spdg~~l~~g--s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
.+.+++... .+...+.++.+++.+.+++.- ...|.|.+||+.+-+... .+ ..|.+.+.+++|+++|
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-~I------~aH~~~lAalafs~~G- 185 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-TI------NAHKGPLAALAFSPDG- 185 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-EE------EecCCceeEEEECCCC-
Confidence 999987532 344557777777777788873 356899999998654432 22 2445899999999997
Q ss_pred eEEEEEeCCCc-EEEEECCcceeeEEeCCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 454 QRIMITSEDSK-LRILDGVDVIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 454 ~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~--~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.+|++++..|+ |||+.+.+....++.... ...|.+++|+|++++|++.|+.++|+|+.++...
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 89999999995 799998866555544322 4567899999999999999999999999998654
No 195
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.2e-13 Score=132.96 Aligned_cols=272 Identities=17% Similarity=0.186 Sum_probs=184.0
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
+-.+..++|++.-..+|.+..|-+|+||+-... .
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst----------------------------------------------~ 131 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----------------------------------------------C 131 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC----------------------------------------------C
Confidence 345778999997778999999999999987641 1
Q ss_pred ceeee-ccccceEEEEecCCC--eEEEEeCCCcEEEEecCCC------------eEeEEee--CCCcEEEEEEeeCCCCE
Q 005956 302 LQELH-GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCN------------QCLNVFD--HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 302 ~~~l~-gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~------------~~~~~~~--h~~~V~~l~f~p~d~~~ 364 (667)
...++ .....|++++|-|.+ .|+.|+.. -|.||..... .+...++ .+.+|+.++|++ |+..
T Consensus 132 pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~ 209 (445)
T KOG2139|consen 132 PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTI 209 (445)
T ss_pred CceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCE
Confidence 11222 234679999999977 67777664 5999976421 1222333 336899999999 8999
Q ss_pred EEEEec-CCeEEEEecCCCeEEEec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 365 FISGSI-DGKVRIWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 365 l~sgs~-Dg~v~iwdl~~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+++++. |..|.|||..++..+.+. ...+.++-+.|+|||.+|++++-|+..++|+...... .+.+.+. .+.
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw~lg------sgr 282 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERWILG------SGR 282 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce-ecceecc------CCc
Confidence 998886 467999999999887755 4556788999999999999999999999996653322 2222111 258
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEEC--Ccc----------eeeE------EeCC----CCCCeEEEEEcCCCCEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDG--VDV----------IHKF------KGLP----KSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~--~~~----------~~~~------~~~~----~~~~v~~v~~spdg~~l~s 500 (667)
|...+|+|.|..+|++.+..-.|+-... +.. .... .... -.+.+.+++|.|.|.|||+
T Consensus 283 vqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 9999999999777777766555443321 100 0000 0001 2467789999999999998
Q ss_pred EeCCC--------cEEEEEcCCCCccc-c---ccccCccceeEEcc---CCcEEEEecCCCCc
Q 005956 501 IGDDC--------RVYVWNYDELCFPS-S---KQKNSVRSCEHFFS---EGVSVAVQWPGIGT 548 (667)
Q Consensus 501 gs~Dg--------~I~iWd~~~~~~~~-~---~~~~~~~~~~~fs~---dg~~lav~w~~~~~ 548 (667)
.-..+ .|.+||....-... . .-.......+.|+| +|..|.++|+...-
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri 425 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI 425 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence 75433 46677765432211 1 01112244556665 68899999997643
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=9e-15 Score=150.36 Aligned_cols=235 Identities=20% Similarity=0.262 Sum_probs=165.2
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeC-CCCEEEEEecCCeEEEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPI-DDNYFISGSIDGKVRIW 377 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~iw 377 (667)
..++.||++.|++|.|+.+| +|++|+.|-.+.|||.-..+.+..+ +|...|.++.|-|. ++.++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 46788999999999999999 9999999999999999988888887 49999999999995 45578899999999999
Q ss_pred ecCCCe-----------EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeecc---ccCcCCCC
Q 005956 378 GVCEKR-----------VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNK 442 (667)
Q Consensus 378 dl~~~~-----------~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~---~~~~~~~~ 442 (667)
|+...+ ...+..|...|..++.-|++ +.+.+++.||+|+-||++...........+. ......-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 998521 12356677889999999988 8899999999999999986332111000000 01111234
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--c
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--S 520 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~--~ 520 (667)
..++..+|....+|++|+.|--.++||.+.....+...... .+.|- -.++.|+-|-....+... .
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~------~~~pp-------~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM------NTCPP-------KDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc------cCCCC-------cccchhheecCccccCccccc
Confidence 67899999988999999999999999976554444332110 01110 012222222221111111 1
Q ss_pred ccccCccceeEEccCCcEEEEecCCCCcc
Q 005956 521 KQKNSVRSCEHFFSEGVSVAVQWPGIGTE 549 (667)
Q Consensus 521 ~~~~~~~~~~~fs~dg~~lav~w~~~~~~ 549 (667)
.+.....+++.|+|+|.-|.++|++..--
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVY 298 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVY 298 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEE
Confidence 12223456789999999999999987543
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=2.1e-13 Score=148.31 Aligned_cols=236 Identities=15% Similarity=0.119 Sum_probs=168.1
Q ss_pred cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE--e-----EEeeCCCcEEEEEEeeCCCC--EEEEEecCCeEEE
Q 005956 308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC--L-----NVFDHHNYVTCVQFNPIDDN--YFISGSIDGKVRI 376 (667)
Q Consensus 308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~--~-----~~~~h~~~V~~l~f~p~d~~--~l~sgs~Dg~v~i 376 (667)
-...|.+++|+|.. +++.|..+|.|.+||+..+.. . ....|..+++.+.|.. +.. -|++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 35689999999976 888999999999999987654 1 2224899999999987 433 4999999999999
Q ss_pred EecCCCeE------EEec-------ccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCccee-eeEeeccccCcCCC
Q 005956 377 WGVCEKRV------VDWA-------DVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGN 441 (667)
Q Consensus 377 wdl~~~~~------~~~~-------~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~~~ 441 (667)
|+++.-.. .... .....+++++|.+ +-+.+++|+..|.|.--+..+..... .....+.....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98765321 1111 1234588999988 56789999999998874444333332 12233334556789
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCc-c
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCF-P 518 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~-~ 518 (667)
+|+.+.++|-+...+++++ |-+++||... .....+....+...+++++|||... .++++..||.|.|||+..... +
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 9999999998755555555 9999999865 3333333334667799999999875 566777899999999865433 2
Q ss_pred ccc--cccCccceeEEccCCcEEEEecCC
Q 005956 519 SSK--QKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 519 ~~~--~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
... ........+.|+++|+.||++-..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCC
Confidence 221 124555667788889999996443
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1e-13 Score=152.29 Aligned_cols=255 Identities=20% Similarity=0.308 Sum_probs=177.4
Q ss_pred cccEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 222 KGCIWTLKFSP--DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 222 ~~~I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
...|+.|.+-. |..+|++|+.||.||||+-..... +..++.. . .
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------------~~~eLVT-----------a--------w 1154 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------------KKPELVT-----------A--------W 1154 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEeccccccc---------------CCceeEE-----------e--------e
Confidence 34688888865 456999999999999997542100 0000000 0 0
Q ss_pred Cccee-eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 300 SPLQE-LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 300 ~~~~~-l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
..+.. +.+-.+.=.-+.|.... +|+++|.-..|+|||+.+..+...+. ...-|+++.-+...++.|+.|..||.|+
T Consensus 1155 ~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvR 1234 (1387)
T KOG1517|consen 1155 SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVR 1234 (1387)
T ss_pred ccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceE
Confidence 00000 11111111335676544 88888878999999999888888775 5557888877765789999999999999
Q ss_pred EEecCCCe----EEEecccCCc--eEEEEEeeCCCE-EEEEecCCcEEEEEecCCccee-eeEeeccccCcCCCCeEEEE
Q 005956 376 IWGVCEKR----VVDWADVRDV--ISAICYIPDGKG-FIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 376 iwdl~~~~----~~~~~~~~~~--v~~v~~spdg~~-l~~gs~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~I~~l~ 447 (667)
+||.+... +..+..|... |..+.+.+.|-. |++|+.+|.|++||++...... ..+..+.. -++..+++.
T Consensus 1235 vyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~ 1311 (1387)
T KOG1517|consen 1235 VYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALT 1311 (1387)
T ss_pred EeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeee
Confidence 99987643 3346667666 999999997755 9999999999999999852211 12222111 123589999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECC-cceeeEE------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 448 FSRDESQRIMITSEDSKLRILDGV-DVIHKFK------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.++. ...+++|+. +.|+||++. +.+..++ +. ..+.+.+++|+|---+||+|+.|.+|.||....+.
T Consensus 1312 VH~h-apiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q-~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEH-APIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ-RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eccC-CCeeeecCc-ceEEEEecChhhhcccccCcccccC-cCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9998 478888888 999999965 2222222 22 34567999999999999999999999999987654
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.8e-13 Score=124.11 Aligned_cols=241 Identities=20% Similarity=0.298 Sum_probs=163.2
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
++|.++|+.|+|.. .+|++|+. |.|+=|...+..... +. ...|..
T Consensus 59 qahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~E~~es~---------------~~----------------K~lwe~- 103 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWNEEEESL---------------AT----------------KRLWEV- 103 (325)
T ss_pred cccCCCeeeeeeeh--hheeeccC-ceEEEeeehhhhhhc---------------cc----------------hhhhhh-
Confidence 79999999999994 47888775 999999887532110 00 000000
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..|.++-.-.--.|+++...|.. -++.++.|+.++-||+++|+..+.+. |+++|.++.-.. ....+++|+.||++|+
T Consensus 104 ~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRv 182 (325)
T KOG0649|consen 104 KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRV 182 (325)
T ss_pred cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEE
Confidence 01111101122468888888766 67777799999999999999999996 999999999855 5668999999999999
Q ss_pred EecCCCeEEEeccc-----------CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 377 WGVCEKRVVDWADV-----------RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 377 wdl~~~~~~~~~~~-----------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
||+++++.+..... ...|.+++. +..++++|+ ...+.+|.++....... +.+. .++..
T Consensus 183 Wd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~v-fpip-------a~v~~ 251 (325)
T KOG0649|consen 183 WDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCV-FPIP-------ARVHL 251 (325)
T ss_pred EeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEE-Eecc-------cceeE
Confidence 99999987754322 123555554 455777765 45899999998766432 3332 56788
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-GKHIISIGDDCRVYVW 510 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~Dg~I~iW 510 (667)
+.|..+ .+++++..+.|.-|.+.-..+..... ......+..|+.. -++|-.++....+.|+
T Consensus 252 v~F~~d---~vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 252 VDFVDD---CVLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeeecc---eEEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeee
Confidence 888765 78888888899999876544433322 2233444444322 2556566666666665
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=3.1e-14 Score=147.52 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=156.4
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+...-++.+|.++|.|+++++++.++++||.||+|+.|++... .. ++.
T Consensus 333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n-~d-----p~d------------------------- 381 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN-QD-----PDD------------------------- 381 (577)
T ss_pred ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC-CC-----ccc-------------------------
Confidence 34455688999999999999999999999999999999987621 00 000
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~ 366 (667)
.++ .......+.||++.|+.+++|+.. .|++|+.||+|++|+.....+ .+|+ .......+.|-.......+
T Consensus 382 ---s~d-p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 382 ---SYD-PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred ---ccC-cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhh
Confidence 000 112356788999999999999887 999999999999999887666 4553 3345566666541212223
Q ss_pred EEecCCeEEEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 367 SGSIDGKVRIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
+...-+.--++++.....+.+.. ....+.-+.++|.+...+++..++.|+++|..++..... ...
T Consensus 457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s-------~~a 529 (577)
T KOG0642|consen 457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS-------MVA 529 (577)
T ss_pred hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh-------eee
Confidence 22222333333443333222221 124477888999999999999999999999998877543 233
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV 473 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~ 473 (667)
|...++++++.|+| -+|++++.|+.+++|.+...
T Consensus 530 ~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccceecceeecCCC-ceEEeecCCceeehhhccch
Confidence 44789999999996 79999999999999987543
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.9e-13 Score=148.91 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=139.9
Q ss_pred CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~ 405 (667)
+..|.+||...........+...+...+|+| +++.|+.++.+ ..|++||+.+++...+....+....++|+|||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4789999998766554456788899999999 99999887754 3699999998875544444445567899999999
Q ss_pred EEEEe-cCCcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeC
Q 005956 406 FIVGS-ITGTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGL 480 (667)
Q Consensus 406 l~~gs-~dg~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~ 480 (667)
|+++. .+|.+.|| |+.++.. ..+. . +...+....|+|||..+++++..++...||++. ........
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~--~~lt--~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~- 332 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTP--SQLT--S----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG- 332 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCe--Eeec--c----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-
Confidence 88865 68876666 4444332 1221 1 124578899999985555566677888888753 22122112
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 481 PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
+.. ....|+|||++|+.++.++ +.+||+.++........ .......|+|||..++.+....
T Consensus 333 -~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 333 -GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred -CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCC
Confidence 222 3578999999999888765 66699988765332211 1223468999999999987643
No 202
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=132.18 Aligned_cols=220 Identities=18% Similarity=0.283 Sum_probs=163.2
Q ss_pred cccceeec-cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQ-AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~-~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
+.+...|. .|-+.|.|+.|.|++..||+-. |..|.+|++.+......
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va------------------------------- 159 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA------------------------------- 159 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-------------------------------
Confidence 33444444 5677999999999999998876 78899999986322100
Q ss_pred CCCcccccCCcceeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~ 366 (667)
.-+...-.+|....++-+|+| ++.-+....|++++.||+++.++...+. |...|..+.|+|+...+|+
T Consensus 160 --------ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lv 231 (370)
T KOG1007|consen 160 --------EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILV 231 (370)
T ss_pred --------eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEE
Confidence 000111123667788889998 4455556678999999999988887775 8899999999997778899
Q ss_pred EEecCCeEEEEecCCCe--EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee---------------
Q 005956 367 SGSIDGKVRIWGVCEKR--VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE--------------- 428 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~--~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~--------------- 428 (667)
+|+.||.|+|||.+.-+ +....+|...|.++.|+|. .++|++|+.|..+.+|....-.....
T Consensus 232 t~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds 311 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS 311 (370)
T ss_pred EcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence 99999999999998754 4457889999999999994 56788899999999997643211000
Q ss_pred --e-Eeecc----ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956 429 --K-VDFHD----RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 429 --~-~~~~~----~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
. -.+.. ....|...|.+++|+.-++-.+++-+.||++.|=.+.
T Consensus 312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 00111 2345678999999998888889999999999886654
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.7e-12 Score=141.20 Aligned_cols=203 Identities=14% Similarity=0.178 Sum_probs=138.4
Q ss_pred eeeeccccceEEEEecCCC-eEEEEe---CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCC--eEE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCS---MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDG--KVR 375 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s---~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg--~v~ 375 (667)
..+..+...+...+|+||| .|+..+ .+..|.+|++.+++..........+..+.|+| |++.|+.. +.++ .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEE
Confidence 3445566789999999999 666543 24579999999887655554445566789999 88877755 4444 599
Q ss_pred EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-CcEEEE--EecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFY--KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~--d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+||+.+++...+......+...+|+|||+.|+..+.+ |...+| |+.++.. ..+... ........|+|+|
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~~------~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITWE------GSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeecC------CCCccCEEECCCC
Confidence 9999999888777666678899999999999877754 455555 5544432 222221 1345678999997
Q ss_pred CeEEEEEeCC--CcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEcCCCCc
Q 005956 453 SQRIMITSED--SKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR---VYVWNYDELCF 517 (667)
Q Consensus 453 ~~~l~~~s~d--g~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~---I~iWd~~~~~~ 517 (667)
..+++++..+ ..|++||+.... ..+.. ........|+|||++|+.++.++. +++++++....
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 4444444433 358888976432 22221 122346789999999999988764 77888865543
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.56 E-value=6.2e-14 Score=146.20 Aligned_cols=207 Identities=18% Similarity=0.286 Sum_probs=153.8
Q ss_pred ccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
....|+.+.|.| |...||.|++||.|++|.+...... ....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~--------------------------------------e~~~ 667 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP--------------------------------------ENEM 667 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCC--------------------------------------cccC
Confidence 456799999999 6779999999999999999863221 1124
Q ss_pred CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
.+-..+.+|...|++|.|+|=. .|+++++|.+|++||+.+++....+ +|.+.|..++|+| +|+.+++.+.||+|++
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEE
Confidence 5677889999999999999954 8999999999999999998766555 6999999999999 9999999999999999
Q ss_pred EecCCCeEEEec---ccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEE
Q 005956 377 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 377 wdl~~~~~~~~~---~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~ 448 (667)
|..+.+..-... .....-..+.|--||+++++.+.| ..|.+||..+-..... ...+... ..+.--.+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-----ps~LvP~Y 821 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-----PSPLVPHY 821 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-----Cccccccc
Confidence 998876532111 112233456788899999887765 4688888876543221 1111110 11222234
Q ss_pred ccCCCeEEEEEeCCCcEEEEECC
Q 005956 449 SRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
.+|.+.++++|-.|..|.+|.+-
T Consensus 822 D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cCCCceEEEecCCCceEEEEEec
Confidence 56655678888889999999854
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.3e-13 Score=143.80 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=191.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+-...-..-.||+|+++|+.... ..|+||.+.++
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg--------------------------------------------- 47 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATG--------------------------------------------- 47 (792)
T ss_pred cccceecccccccCCcEEEEeeC-CEEEEEecchH---------------------------------------------
Confidence 33333445679999998887765 47999999874
Q ss_pred CcceeeeccccceEEEEecCCC----eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC--CCCEEE-EEecCC
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN----YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI-SGSIDG 372 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~----~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--d~~~l~-sgs~Dg 372 (667)
..+..+.+|..+++.+.+.|.. ++++++.||+|++||...+..++++....++..+.+.|. +...++ .+..|.
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 3466788999999999997654 677999999999999999999999987777766666431 111222 222121
Q ss_pred e------------EEEEecCCCeE--EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 373 K------------VRIWGVCEKRV--VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 373 ~------------v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
. ++-+.+.+... ..+........++.+++.|.+.++.. +-.+.+|...... ...........
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~---~~~~~~~~~~~ 203 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT---KHTSSRDITVH 203 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEecccc---eeeccchhhhh
Confidence 1 11111111100 01111111256778888887666554 4478888887654 11112222334
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
|...+++.+++|.+ .+++++..||+|.+|.-.. -...-..+-|...|++++|+++|.+|++||..|.+.+|.+.+
T Consensus 204 Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 204 HTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 55668999999996 8999999999999996321 111112234888999999999999999999999999999999
Q ss_pred CCccccccccCccceeEEccCCcEEEEecCC
Q 005956 515 LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 515 ~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
++.........++..+.++||+...++.-.+
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 9977777888888889999999988876543
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=3e-12 Score=124.62 Aligned_cols=299 Identities=14% Similarity=0.141 Sum_probs=188.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCceee----------eeeCCCCC--ccccCCCCeEEecccCCCCceeecCCCc
Q 005956 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASC----------KSFTDDGG--FGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
-++|||+|+|+|+++.- .+.|-|..+.+... +.+..+.- +....+++++..+.....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---------- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---------- 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc----------
Confidence 46899999999999876 67788887754322 22222221 111222333333222111
Q ss_pred ccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID- 371 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D- 371 (667)
.-...+..-.+.+.+++|+|+| .|.+...|-.|.+|.+.+.++...--....+..++|+| ++++.+.++..
T Consensus 82 -----ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrD 155 (447)
T KOG4497|consen 82 -----EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRD 155 (447)
T ss_pred -----eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeeccc
Confidence 1123445566789999999999 67788899999999999888766555555678999999 99888776542
Q ss_pred -----------------------------------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEE
Q 005956 372 -----------------------------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCH 416 (667)
Q Consensus 372 -----------------------------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~ 416 (667)
..+.+||-.-.-.+......-.+..++|+|.++++++|+.|+.++
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhh
Confidence 123333322111111122234588899999999999999999887
Q ss_pred EEEecCCcc--------------------------------------------------eee----eEeeccc-----cC
Q 005956 417 FYKASGNDL--------------------------------------------------KLE----KVDFHDR-----KK 437 (667)
Q Consensus 417 l~d~~~~~~--------------------------------------------------~~~----~~~~~~~-----~~ 437 (667)
+.+--+-+. ..+ ...++.. ..
T Consensus 236 vlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 754311000 000 0001100 01
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSE--DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.....+.-++|++|. .++++-.. -+.+.+||+++...-. ......+|....|+|....|+.+.....+|+|.....
T Consensus 316 nPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 112346679999994 55555432 3579999987543211 1124678999999999988888877788999998886
Q ss_pred CccccccccCccceeEEccCCcEEEEecC
Q 005956 516 CFPSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 516 ~~~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
...........+..+.|+-+|..+++...
T Consensus 394 ~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 394 RVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred eEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 55544455566777788888888877544
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1e-12 Score=130.86 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=170.2
Q ss_pred eeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe----EeEEeeCCCcEEEEEEeeCCCCEEEEEecC--CeEEEE
Q 005956 304 ELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ----CLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIW 377 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iw 377 (667)
.....+++|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..+.-++....++++|+.. ..+.||
T Consensus 100 ~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence 334556677777754 5689999999999999988432 344445556777777788677788889988 889999
Q ss_pred ecCCCeEEEe--------cc--cCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 378 GVCEKRVVDW--------AD--VRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 378 dl~~~~~~~~--------~~--~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
|+.+.+.+.. .+ ..-.++.+.|-+. ...|++++.-+.+++||.+....+..++.+.. .+|++
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E------~~is~ 252 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE------NPISS 252 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc------Cccee
Confidence 9998754421 11 1234788889887 88999999999999999998887777776654 78999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN 524 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~ 524 (667)
+...|++ ++|+++..-+.+..||++.....-. ..+-.+.+.++..+|.+++|+++|-|..|+|+|+++.+.......+
T Consensus 253 ~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 253 TGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred eeecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence 9999996 8999999999999999986543322 2236789999999999999999999999999999996554444444
Q ss_pred CccceeEEcc
Q 005956 525 SVRSCEHFFS 534 (667)
Q Consensus 525 ~~~~~~~fs~ 534 (667)
...+++.+.+
T Consensus 332 s~lt~il~~~ 341 (412)
T KOG3881|consen 332 SRLTFILLRD 341 (412)
T ss_pred ccccEEEecC
Confidence 4444544443
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-13 Score=137.96 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=151.0
Q ss_pred EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-
Q 005956 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 389 (667)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~- 389 (667)
..++|+.+| .|++++.||++|||+......+... .|...|.++.|+| |+++|++-+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 788999998 9999999999999998776655544 5999999999999 99999999999 89999999996554332
Q ss_pred --cCCceEEEEEeeCC---C--EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 390 --VRDVISAICYIPDG---K--GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 390 --~~~~v~~v~~spdg---~--~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.......+.|+.|+ . .++.....+.|+.||+...... ....... .......|++++.+++| ++++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~-~~~~~~siSsl~VS~dG-kf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRK-KIKRFKSISSLAVSDDG-KFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhh-hhhccCcceeEEEcCCC-cEEEEeccC
Confidence 34456677788776 2 3333445567777777644331 1111110 11123579999999996 999999999
Q ss_pred CcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 463 SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 463 g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
|.|.|++..++... +....|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999998865443 33345889999999999999999999999999988765
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=6.8e-13 Score=136.73 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=149.9
Q ss_pred CCC-eEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-----------
Q 005956 319 NSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----------- 381 (667)
Q Consensus 319 ~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~----------- 381 (667)
+.+ -|+.|-.-|.|.+.|....+..+.+. ....|+|+.|-|.+...|+.+-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455 67778788889998877654444443 4578999999998888999999999999997531
Q ss_pred ---Ce---------------EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 382 ---KR---------------VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 382 ---~~---------------~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+. +..|.-..+.|+.++|+|||++||+.+.||.++|||..+.++... .+.--+..
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~-------mkSYFGGL 335 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV-------MKSYFGGL 335 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH-------HHhhccce
Confidence 00 112223345789999999999999999999999999987665432 11123678
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----------------------------
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT----------------------------- 494 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd----------------------------- 494 (667)
.|++|+||| ++|++|++|.-|.||...+.....++++|...|..++|.|-
T Consensus 336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred EEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 999999996 99999999999999999988888888899999999999830
Q ss_pred ------C-------------CEEEEEeCCCcEEEEEcCCCCc
Q 005956 495 ------G-------------KHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 495 ------g-------------~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+ -.|.+.+.|-.+.+||+.....
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 1 1367788999999999976543
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=128.32 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=177.2
Q ss_pred CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..|...+++|.+.|+++.|-.+++|++|..-|.|++|++.+...+..+. +...|+.++-.| + ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEE
Confidence 3567788899999999999999999999999999999999988877775 777999999998 4 67888889999999
Q ss_pred EecCCCeEEEec------------------------------------------------------ccCCceEEEEEee-
Q 005956 377 WGVCEKRVVDWA------------------------------------------------------DVRDVISAICYIP- 401 (667)
Q Consensus 377 wdl~~~~~~~~~------------------------------------------------------~~~~~v~~v~~sp- 401 (667)
|++..+..+... ...+.+.+..+.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 998653211000 0012244444322
Q ss_pred CCC--EEEEEecCCcEEEEEecCCcceee---eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--
Q 005956 402 DGK--GFIVGSITGTCHFYKASGNDLKLE---KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-- 474 (667)
Q Consensus 402 dg~--~l~~gs~dg~i~l~d~~~~~~~~~---~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-- 474 (667)
++. .+++|..+|.+.+||+.++..... ..........|..+|.++.|.+. ...=++++.+..+..|++....
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccCc
Confidence 233 456788999999999998743322 11222234457789999999875 2455777888889999866321
Q ss_pred ---eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEecCCC
Q 005956 475 ---HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 475 ---~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
..+... ..-.|..+.+-||++.+||++.|+.|+||+..+...... ..+.....+++|+||..++|.+..+.
T Consensus 241 lq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 241 LQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred ccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 111111 234567788899999999999999999999999876543 33446777889999988888876554
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.7e-12 Score=140.08 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=138.9
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCC--eE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG--KV 374 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg--~v 374 (667)
...+..|...+.+.+|+|++ .|+..+.+ ..|.+||+.+++............+.+|+| +++.|+ +.+.++ .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceE
Confidence 34455677789999999999 77766643 469999999887765555555566889999 887665 445555 59
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCc--EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~--i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
++||+.+++...+..+......++|+|||+.|+..+. +|. |.++++.++... .+...+ .....++|+|+
T Consensus 275 y~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt~~g------~~~~~~~~SpD 346 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLTFQG------NYNARASVSPD 346 (433)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--EeecCC------CCccCEEECCC
Confidence 9999999988777666666678899999999988764 455 555565554432 222222 33456899999
Q ss_pred CCeEEEEEe-CCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005956 452 ESQRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC 516 (667)
Q Consensus 452 g~~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~ 516 (667)
| ++|+..+ .++ .|.+||+......... +........|+|||++|+..+.+ +.|++++++...
T Consensus 347 G-~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 347 G-KKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred C-CEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 7 4555443 333 6899997643322111 22244567999999998877653 468888886543
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=1.3e-11 Score=120.03 Aligned_cols=276 Identities=12% Similarity=0.238 Sum_probs=179.0
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
..+++|+.|...++.|.++| .+||+++-.... ....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~-------------------------------------------~~r~ 43 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES-------------------------------------------ASRQ 43 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh-------------------------------------------hhhc
Confidence 44599999999999998888 899998741100 0000
Q ss_pred eeccccceEEEEecCCC-eEEEEeCC------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~D------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+..-.-.+.-+-|- .+ ..+.||.+ ..|.|||=...+++..+....+|.++.+.+ +.|++. ..+.|++|
T Consensus 44 ~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~Vy 118 (346)
T KOG2111|consen 44 FIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVY 118 (346)
T ss_pred cccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEE
Confidence 00000112222222 23 33344433 479999988888999999999999999976 344444 46889999
Q ss_pred ecCC-CeEEEe---cccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCcce-eeeEeeccccCcCCCCeEEEEEccC
Q 005956 378 GVCE-KRVVDW---ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 378 dl~~-~~~~~~---~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
...+ -+.+.. ......+.+++-+.+...||. |-.-|.|.|-|+...... ...+ .+|...|.+++.+.+
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I------~AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII------NAHDSDIACVALNLQ 192 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE------EcccCceeEEEEcCC
Confidence 8874 333322 221222444443334344554 556799999999876652 2222 345689999999999
Q ss_pred CCeEEEEEeCCCc-EEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc--------
Q 005956 452 ESQRIMITSEDSK-LRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-------- 520 (667)
Q Consensus 452 g~~~l~~~s~dg~-I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-------- 520 (667)
| ..++++|..|+ |||||..+. ++.++.-.....|.+++|||+..+||++|+-|+|+|+.+........
T Consensus 193 G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~ 271 (346)
T KOG2111|consen 193 G-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFK 271 (346)
T ss_pred c-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccc
Confidence 6 89999999996 899998754 44444333567799999999999999999999999999877432111
Q ss_pred -----ccccCccceeEEc-cCCcEEEEecCCCCcccccccCC
Q 005956 521 -----KQKNSVRSCEHFF-SEGVSVAVQWPGIGTEQKSLCSS 556 (667)
Q Consensus 521 -----~~~~~~~~~~~fs-~dg~~lav~w~~~~~~~~~~~~~ 556 (667)
+.....++...|+ |.|...+++|......+.++..+
T Consensus 272 ~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~D 313 (346)
T KOG2111|consen 272 RLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICAD 313 (346)
T ss_pred ccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeC
Confidence 1112234445554 45677777887776554444443
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8e-12 Score=136.55 Aligned_cols=203 Identities=15% Similarity=0.184 Sum_probs=142.9
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeC---CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCe--E
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGK--V 374 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~---Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~--v 374 (667)
...+..|...+...+|+||| .|+..+. +..|.+||+.+++......+...+...+|+| +++.|+ +.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceE
Confidence 45566788899999999999 7776653 4689999999988766555677788999999 887765 5555554 8
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
++||+.++....+..+.......+|+|||+.|+..+. +| .|.++|+.+.... .+... ...+....|+|+
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~~------~~~~~~~~~Spd 344 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISFG------GGRYSTPVWSPR 344 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--EeecC------CCcccCeEECCC
Confidence 8889999888877777777788999999999988764 33 5777787655432 22211 244667889999
Q ss_pred CCeEEEEEeC-C--CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCCc
Q 005956 452 ESQRIMITSE-D--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDD------CRVYVWNYDELCF 517 (667)
Q Consensus 452 g~~~l~~~s~-d--g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D------g~I~iWd~~~~~~ 517 (667)
| +.|+..+. . ..|.+||+... ...+. ....+....|+|||++|+..+.+ ..++++++.++..
T Consensus 345 G-~~ia~~~~~~~~~~i~~~d~~~~~~~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 345 G-DLIAFTKQGGGQFSIGVMKPDGSGERILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred C-CEEEEEEcCCCceEEEEEECCCCceEecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 7 55555443 2 36888886532 22222 22346778999999998876543 2578888876543
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=6.4e-14 Score=141.87 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=185.3
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~ 390 (667)
-..+.++.+| +|+.|+..|.|-.+|..+++....+.....|..+.|.. +.++|+++ ....++|||-..-++ .....
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~GtEl-HClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNNGTEL-HCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCCCcEE-eehhh
Confidence 4568889999 99999999999999999999999998888999999998 77777776 467899999655444 44445
Q ss_pred CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
...|..+.|-|.--+|++++..|.++.-|+..+++... ..+..+.+..+.-+|-+ ..+-+|...|+|.+|..
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~-------~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS-------IRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSP 280 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHH-------HHccCCccchhhcCCcc-ceEEEcCCCceEEecCC
Confidence 56789999999988899999999999999999887643 22234778888889975 68888999999999997
Q ss_pred CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCccc
Q 005956 471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQ 550 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~ 550 (667)
.......+...|.++|.++++.++|.|+||+|.|..|+|||+.....+.........+.+.||.. ..||++|.+.....
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqk-glLA~~~G~~v~iw 359 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQK-GLLALSYGDHVQIW 359 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccc-cceeeecCCeeeee
Confidence 75544455556999999999999999999999999999999998876666555666677778764 46888877665443
Q ss_pred c
Q 005956 551 K 551 (667)
Q Consensus 551 ~ 551 (667)
+
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 3
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=2e-12 Score=125.74 Aligned_cols=234 Identities=15% Similarity=0.205 Sum_probs=177.0
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
.+.--..+|+|.+|++|+ .++.+.....|.||.....+ ...++. |...|+++.|+| ..+.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 344446789999999999 89999999999999987665 445554 999999999999 889999999999999999
Q ss_pred cC-CCe---EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 379 VC-EKR---VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 379 l~-~~~---~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
.. .++ ...+..+....+++.|+|.++.|++|+....|.+|-++...--.. -...++.....|+++.|+|++ -
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV---sKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV---SKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh---hhhhCCccccceeeeeccCCc-c
Confidence 84 433 334677889999999999999999999999999988764332100 011133445789999999995 8
Q ss_pred EEEEEeCCCcEEEEECC-----c---------------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 455 RIMITSEDSKLRILDGV-----D---------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~-----~---------------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
++++|+.|+..+|+... + +...+. ...+.+..+.|+|+|..|+-.+.|+.|.+=|...
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 89999999999999631 0 011111 3567899999999999999999999999999887
Q ss_pred CCc--cccccccCccceeEEccCCcEEEEecC
Q 005956 515 LCF--PSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 515 ~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+.. ........+...+.|-.+...++++.+
T Consensus 238 p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CchhccchhhccCCceeeEeecCCceeecCCC
Confidence 752 222222234444566666666666544
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.2e-12 Score=135.95 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=133.4
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCeEEEE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIW 377 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~v~iw 377 (667)
..+..+...+.+.+|+|+| .|+..+.+ ..|.+||+.+++..........+.+.+|+| |++.|+ +.+.++...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEE
Confidence 4445677789999999999 77766543 359999999988765554556677899999 888776 45677765555
Q ss_pred --ecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 378 --GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 378 --dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
|+.++....+..+........|+|||+.|+..+. +|...+|.+.........+...+ .......|+|+| +
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g------~~~~~~~~SpDG-~ 340 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG------SYNTSPRISPDG-K 340 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC------CCcCceEECCCC-C
Confidence 5666666666555556677899999999887654 46677776643222222222222 233467899997 5
Q ss_pred EEEEEeCCC---cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 005956 455 RIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD 513 (667)
Q Consensus 455 ~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~ 513 (667)
+|+..+.++ .|.+||+.....+... .........|+|||++|+.++.++ .+++.++.
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 666555443 6999997643322211 222346789999999998887654 35555553
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.9e-12 Score=138.36 Aligned_cols=219 Identities=14% Similarity=0.070 Sum_probs=148.2
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.+..+.+.+.+.+|||||+.||..+. +..|.+|++.++...
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~----------------------------------- 236 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------------------------- 236 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 455567788999999999999987642 356888888753221
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEE-EeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLS-CSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s-~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.+..+.+| +..+.|+||| .|+. .+.++ .|.+||+.+++..+...+...+....|+| +++.|+..
T Consensus 237 --------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~ 304 (429)
T PRK03629 237 --------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYT 304 (429)
T ss_pred --------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEE
Confidence 11222233 4467999999 5654 34455 58899999888776666666788999999 99988777
Q ss_pred ecC-C--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~D-g--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.+ + .|+++|+.++....+..........+|+|||++|+..+.+ ..|.+||+.++.... +. .. ..
T Consensus 305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~--Lt--~~-----~~ 375 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LT--DT-----FL 375 (429)
T ss_pred eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE--eC--CC-----CC
Confidence 754 3 4566678777666554444556778999999999886643 357888987765432 11 11 12
Q ss_pred eEEEEEccCCCeEEEEEeCCCc---EEEEECCc-ceeeEEeCCCCCCeEEEEEcC
Q 005956 443 ITGIQFSRDESQRIMITSEDSK---LRILDGVD-VIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~---I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp 493 (667)
.....|+||| ..|+.++.++. +.++++.. ....+.. +.+.+...+|+|
T Consensus 376 ~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECcc--CCCCcCCcccCC
Confidence 3467899997 66666666653 67777642 3333433 566778888887
No 218
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=6.2e-12 Score=124.61 Aligned_cols=234 Identities=16% Similarity=0.175 Sum_probs=156.1
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
..+|.++.++.+ .|+.+=++. |.|||+.+..... .
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLh------------------------------------------T 121 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLH------------------------------------------T 121 (391)
T ss_pred CCceEEEEEccc--eEEEEEccc-EEEEecccceeeh------------------------------------------h
Confidence 457999999855 677776665 9999998743210 1
Q ss_pred ceeeeccccceEEEEecCCC-eEEE--EeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe-EEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLS--CSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK-VRI 376 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s--~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~-v~i 376 (667)
+.+...|...+.++++++.+ +|+- ....|.|.|||+.+-+.+..+. |.+.+.|++|++ +|.+|++++..|+ ||+
T Consensus 122 I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 122 IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRV 200 (391)
T ss_pred hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEE
Confidence 22222455667777777776 6663 3346899999999999988886 999999999999 9999999999998 799
Q ss_pred EecCCCeEEEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC--eEEEEEccC
Q 005956 377 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK--ITGIQFSRD 451 (667)
Q Consensus 377 wdl~~~~~~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~--I~~l~~sp~ 451 (667)
+.+.+++.+.... ....|.+++|+|++++|++.+..++|++|.+......... -.......... ...+.+.|.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~--~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE--SPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC--CCCCCCcccchhhhhhhhhcch
Confidence 9999988764222 2345899999999999999999999999999765422110 00000000000 000011111
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+.-.+||..+.....+..... ..+..+.-.+...++..++.||.++.|.++-
T Consensus 279 -----------~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 279 -----------QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred -----------hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 122336655544444442111 1233333235788999999999999999864
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5e-12 Score=137.64 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=141.0
Q ss_pred CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 406 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l 406 (667)
..|.++|...........+...+.+.+|+| +++.|+..+.+ ..|++||+.+++...+....+.+.+..|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 467778876555455556778899999999 99988887643 45999999998877666566677889999999988
Q ss_pred EE-EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE--CCc-ceeeEEeCCC
Q 005956 407 IV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD--GVD-VIHKFKGLPK 482 (667)
Q Consensus 407 ~~-gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd--~~~-~~~~~~~~~~ 482 (667)
+. .+.+|...||.+.........+ .. +........|+|||..+++++..++...||. ... ....... .
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~l--t~----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~ 326 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRL--TQ----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--T 326 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEEC--CC----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--C
Confidence 75 5678877777654322111211 11 1234567889999854444544556666664 332 2222222 2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCCc
Q 005956 483 SGSQMSASFTTTGKHIISIGDDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIGT 548 (667)
Q Consensus 483 ~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~ 548 (667)
.......+|+|||++|+..+.++ .|++||+.++......... ......|+|||+.|+......+.
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCCC
Confidence 23344678999999999877654 6999999887654433222 23456899999999998876554
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.1e-12 Score=136.55 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=150.0
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.+.+..|.+.|.+.+|+|||+.|+..+. +..|.+||+.++..
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------------- 238 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------------- 238 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-----------------------------------
Confidence 3556788899999999999999988764 46899999875321
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCc--EEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~--I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s 367 (667)
..+..+.+.+....|+|+| .| ++.+.++. |.+||+.++.......+........|+| +++.|+.
T Consensus 239 -----------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f 306 (435)
T PRK05137 239 -----------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVF 306 (435)
T ss_pred -----------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEE
Confidence 2233455567788999999 55 46666665 7777998887766555666677899999 8998887
Q ss_pred EecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 368 GSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 368 gs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
.+.. ..|+++|+.++....+......+....|+|||+.|+....+ ..|.+||+.+..... + .. ..
T Consensus 307 ~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--l--t~-----~~ 377 (435)
T PRK05137 307 ESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--L--TS-----GF 377 (435)
T ss_pred EECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--c--cC-----CC
Confidence 7643 36888899888776665555567778999999999887654 257778875543221 1 11 12
Q ss_pred CeEEEEEccCCCeEEEEEeCC-----CcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956 442 KITGIQFSRDESQRIMITSED-----SKLRILDGVDVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 493 (667)
.+..+.|+|||..+++++... ..++++|+....... .. ..+.+...+|+|
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~-l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE-VP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE-cc-CCCCccCcccCC
Confidence 466789999974444444433 257777865322221 11 233455666765
No 221
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.45 E-value=2.5e-12 Score=132.27 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=154.0
Q ss_pred ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE-EEEEee------CCCCEEEEEecCCeEEEEe
Q 005956 307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNP------IDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p------~d~~~l~sgs~Dg~v~iwd 378 (667)
.|...|.++.|+.+..++..+.|..+.+|.--+........ ..+.|. .+...+ .....|+.++.||.+.|.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 46667789999987766666666666665433332222221 122111 111111 1245788899999999987
Q ss_pred cCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 379 VCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 379 l~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
-...--.....|.+.+.+-.|+|||..|++++.||.|++|.-.+.-.. . ......+|.|++|.|+..+.+++
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS-t-------l~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS-T-------VVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-H-------HhhcCceeEEEEECCCCCceEEe
Confidence 544333346678899999999999999999999999999987643221 1 11123789999999997666666
Q ss_pred EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcE
Q 005956 459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 538 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~ 538 (667)
.+. .+.|=.+......++-..|.+-|.++.|++..+.|++|++|-..+|||-.....-........++.++|+|| ..
T Consensus 164 ~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 164 QGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred cCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 554 344444443333344444999999999999999999999999999999887765555566777888899998 55
Q ss_pred EEE
Q 005956 539 VAV 541 (667)
Q Consensus 539 lav 541 (667)
.++
T Consensus 241 ~~v 243 (737)
T KOG1524|consen 241 YLL 243 (737)
T ss_pred eee
Confidence 555
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-11 Score=135.29 Aligned_cols=221 Identities=16% Similarity=0.167 Sum_probs=146.5
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.+.+..|...|.+.+|+|||++|+..+.+ ..|.+|++.++..
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~----------------------------------- 240 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR----------------------------------- 240 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-----------------------------------
Confidence 34566788889999999999999988743 4688999875322
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s 367 (667)
..+..+.+...++.|+|+| .| ++.+.++ .|.+||+.+++......+.......+|+| +++.|+.
T Consensus 241 -----------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f 308 (433)
T PRK04922 241 -----------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYF 308 (433)
T ss_pred -----------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEE
Confidence 1122233344578999999 55 4556665 59999999888766555655567889999 8988887
Q ss_pred Eec-CCe--EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 368 GSI-DGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 368 gs~-Dg~--v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
++. ++. |+++|+.+++...+.........++|+|||++|+..+.++ .|.+||+.++.... +. . ..
T Consensus 309 ~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~--Lt-~------~~ 379 (433)
T PRK04922 309 TSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT--LT-P------GS 379 (433)
T ss_pred EECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE--CC-C------CC
Confidence 764 344 7777887777655444444455789999999998876543 58899987765431 11 1 12
Q ss_pred CeEEEEEccCCCeEEEEEeCC--CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcC
Q 005956 442 KITGIQFSRDESQRIMITSED--SKLRILDGVDV-IHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp 493 (667)
......|+|||..++++.... +.|++++.... ...+.. +.+.+...+|+|
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS--ADGEVREPAWSP 432 (433)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc--CCCCCCCCccCC
Confidence 234578999974444444332 35777787532 222322 345566677775
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.5e-11 Score=121.34 Aligned_cols=226 Identities=15% Similarity=0.222 Sum_probs=159.3
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC----C
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----K 382 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~----~ 382 (667)
..+..++|++.- .++++..|-+|++||-.. .+...++ ....|+|++|-|.....|+.|... -|.||.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 457788999855 789999999999999876 5555554 456899999999778888888765 499997542 1
Q ss_pred e-----------EEEecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 383 R-----------VVDWADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 383 ~-----------~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+ +.+. ..+..|+++.|.+||..+++++. +..|.|||..++...... ....+.++-+.|+|
T Consensus 177 r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-------~~glgg~slLkwSP 248 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-------PKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-------ccCCCceeeEEEcC
Confidence 1 1111 22367999999999999998774 678999999987664321 12237789999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--ccc--------
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSS-------- 520 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~--~~~-------- 520 (667)
|| .+++++.-|+..++|+..+.....+-....+.|...+|+|+|++|.-+.. |.-.+|.+.-... ...
T Consensus 249 dg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 249 DG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred CC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee
Confidence 96 88999999999999975543333332224568999999999998765542 3344555432111 000
Q ss_pred -----------ccc----cCccceeEEccCCcEEEEecCCCC
Q 005956 521 -----------KQK----NSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 521 -----------~~~----~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
... .....+++|.|.|.+||+...+..
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 000 223456889999999999877654
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=4.1e-13 Score=144.39 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=179.6
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..-++...+.||.+.|+.++.+.+..++|+++.|..|+||.+..
T Consensus 220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~------------------------------------ 263 (1113)
T KOG0644|consen 220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD------------------------------------ 263 (1113)
T ss_pred cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC------------------------------------
Confidence 34456678899999999999999999999999999999999985
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE------eeCCCcEEEEEEeeCCCC
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV------FDHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~------~~h~~~V~~l~f~p~d~~ 363 (667)
+.++..+.||++.|++|+|+| ..+.+.||++++||.+ ...+.. +...+-+-.+.|-. ++.
T Consensus 264 ---------~~pvsvLrghtgavtaiafsP---~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~-~~~ 329 (1113)
T KOG0644|consen 264 ---------GAPVSVLRGHTGAVTAIAFSP---RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN-NGD 329 (1113)
T ss_pred ---------CchHHHHhccccceeeeccCc---cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc-ccc
Confidence 567888999999999999999 4488999999999987 111111 12344566777776 788
Q ss_pred EEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 364 YFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
-+++++.|+.-..|.+....... ..+.-+..+.+- .+.+++-.+-.+.+|++.++.+... ...|...
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~-------l~ghsd~ 397 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN-------LMGHSDE 397 (1113)
T ss_pred ccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhh-------hcccccc
Confidence 89999999999888764321110 001111111111 3455556667788999887765422 2334578
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+..+.++|-+....++++.||...|||+.. .++.+.. ....+....||+||..++....-|.++|.....++
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~--gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI--GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec--ccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 899999998888889999999999999764 3333332 34566778999999999998888999998765543
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=6.5e-12 Score=123.10 Aligned_cols=265 Identities=18% Similarity=0.288 Sum_probs=172.6
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
..+-|.++.|...|.+||||..+|.|.++.-..... +...+...-..+. . +..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-----------------~ey~~~t~fqshe------p----EFD 76 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-----------------GEYNFQTEFQSHE------P----EFD 76 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-----------------cceeeeeeeeccC------c----ccc
Confidence 456799999999999999999999999997653111 0000000000000 0 000
Q ss_pred cceeeeccccceEEEEecCCC---eEEEEeCCCcEEEEecCCCe-----------------------------------E
Q 005956 301 PLQELHGHKGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ-----------------------------------C 342 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~-----------------------------------~ 342 (667)
.+..+ .-...|..+.|.+++ .++..+.|++|++|.+.... |
T Consensus 77 YLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p 155 (433)
T KOG1354|consen 77 YLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP 155 (433)
T ss_pred hhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee
Confidence 01111 123568889998766 78888999999999874221 1
Q ss_pred eEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEEecc-----cCCceEEEEEee-CCCEEEEEe
Q 005956 343 LNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDWAD-----VRDVISAICYIP-DGKGFIVGS 410 (667)
Q Consensus 343 ~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~~~~-----~~~~v~~v~~sp-dg~~l~~gs 410 (667)
.+.+. |+.-|.+|.++. |...++++ .|=.|-+|++.-- .++.+.. ....|++..|+| ..+.++-.+
T Consensus 156 rRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 156 RRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 22232 777899999998 88888876 4778999988632 2333333 335689999999 457888899
Q ss_pred cCCcEEEEEecCCcceeeeEee---c--cc----cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---cceeeEE
Q 005956 411 ITGTCHFYKASGNDLKLEKVDF---H--DR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFK 478 (667)
Q Consensus 411 ~dg~i~l~d~~~~~~~~~~~~~---~--~~----~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~ 478 (667)
..|+|++.|++...+-...-.+ . +. ....-..|..+.|+++| +++++-.. -+|++||+. ..+..+.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcceEEe
Confidence 9999999999954332110000 0 00 00112567889999996 66665443 689999974 3445554
Q ss_pred eCCC----------CCC---eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 479 GLPK----------SGS---QMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 479 ~~~~----------~~~---v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.+.. ... -..++|+-++.+++||+..+.+++++...+..
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 4311 111 24578999999999999999999999776643
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=6.4e-13 Score=134.74 Aligned_cols=263 Identities=15% Similarity=0.195 Sum_probs=196.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
-..+.|+.+|++|+.|+.-|.|-.+|+.+... ..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L---------------------------------------------~~E 166 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL---------------------------------------------HFE 166 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccccee---------------------------------------------eee
Confidence 45789999999999999999999999987432 222
Q ss_pred eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
+. -...|.++.|-.+..+++....+.+.|||-. |..+..+.....|..+.|.| .--+|++++..|.++.-|+.+|++
T Consensus 167 i~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl 243 (545)
T KOG1272|consen 167 IN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL 243 (545)
T ss_pred ee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheeeecccCCceEEEeechhhh
Confidence 21 2346888888877756666677899999965 66667777778899999999 778889999999999999999998
Q ss_pred EE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 385 VD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 385 ~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+. +....+.+..++-+|-...+-+|...|+|.+|.......... ...|.++|.+|++.++| .++++++.|.
T Consensus 244 Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK-------iLcH~g~V~siAv~~~G-~YMaTtG~Dr 315 (545)
T KOG1272|consen 244 VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK-------ILCHRGPVSSIAVDRGG-RYMATTGLDR 315 (545)
T ss_pred hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH-------HHhcCCCcceEEECCCC-cEEeeccccc
Confidence 85 555667788899999888999999999999999887665443 23346899999999996 9999999999
Q ss_pred cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCC--Cc--ccccc-ccCccceeEEccCCc
Q 005956 464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY-DEL--CF--PSSKQ-KNSVRSCEHFFSEGV 537 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~-~~~--~~--~~~~~-~~~~~~~~~fs~dg~ 537 (667)
.++|||++...+...... ..+...++||..| +++.+....|.||.= -.+ .. +-..| ....+..+.|.|-..
T Consensus 316 ~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred ceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 999999987654443322 3456678887655 334445567999952 221 11 11122 223556678999888
Q ss_pred EEEEecCCC
Q 005956 538 SVAVQWPGI 546 (667)
Q Consensus 538 ~lav~w~~~ 546 (667)
+|.|+-...
T Consensus 393 vLGIGH~~G 401 (545)
T KOG1272|consen 393 VLGIGHAGG 401 (545)
T ss_pred eeeccccCC
Confidence 888864443
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=2.4e-11 Score=116.93 Aligned_cols=113 Identities=18% Similarity=0.394 Sum_probs=90.8
Q ss_pred cccceEEEEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---CeEEEEecCC
Q 005956 308 HKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---GKVRIWGVCE 381 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl~~ 381 (667)
..++|.+++|+|++ .|+ +|..++.|.+||++ ++.+..+. ...+..+.|+| +|++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 34579999999998 544 45577899999997 56666664 56778999999 99999998754 6799999998
Q ss_pred CeEEEecccCCceEEEEEeeCCCEEEEEec------CCcEEEEEecCCc
Q 005956 382 KRVVDWADVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGND 424 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~------dg~i~l~d~~~~~ 424 (667)
.+.+....+. .++.++|+|||++|++++. |..++||+..+..
T Consensus 135 ~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 135 KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 8888766555 4789999999999999875 6788999987543
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=2.8e-10 Score=123.96 Aligned_cols=201 Identities=18% Similarity=0.260 Sum_probs=137.4
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCC--eE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDG--KV 374 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg--~v 374 (667)
...+..+...+....|+|++ +|+.+..+ ..|++||+.+++......+...+.++.|+| +++.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccE
Confidence 34455566678899999999 77766543 479999999887666555666777899999 8876654 44443 59
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
++||+.++....+..+........|+|||+.|+..+.. + .|.++|+.+.+.. .+... ...+..+.|+|+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~------~~~~~~~~~spd 332 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFR------GGYNASPSWSPD 332 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecC------CCCccCeEECCC
Confidence 99999988877766665556678999999998876643 3 5677777655432 22211 245677899999
Q ss_pred CCeEEEEEeCCC---cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCC
Q 005956 452 ESQRIMITSEDS---KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYDE 514 (667)
Q Consensus 452 g~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~~ 514 (667)
| .+|+.++.++ .|.+||+......... .........|+|||++|+.++.++ .+++.+...
T Consensus 333 g-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 333 G-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred C-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 7 6666666655 7888887653222211 122344568999999998887654 455655444
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=7.7e-11 Score=117.71 Aligned_cols=223 Identities=16% Similarity=0.173 Sum_probs=160.8
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
...-+++|..++.. || .|++|-.+|.+.+|.+..+...
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h---------------------------------------- 138 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH---------------------------------------- 138 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----------------------------------------
Confidence 34556778777766 33 7888899999999999853321
Q ss_pred cCCcceeeeccccceEEEEecCCC--eEEEEeCC--CcEEEEecCCCeEeEEee----------CCCcEEEEEEeeCC--
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMD--KTVRMWQVGCNQCLNVFD----------HHNYVTCVQFNPID-- 361 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~D--g~I~iWd~~~~~~~~~~~----------h~~~V~~l~f~p~d-- 361 (667)
..++..+..+ ..+..+.-++.. .+++|+.. ..+.|||++..+.+..-+ -.-+++.+.|.+ .
T Consensus 139 -ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~ 215 (412)
T KOG3881|consen 139 -SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSP 215 (412)
T ss_pred -cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCC
Confidence 1223333333 334455555544 67779998 899999999875444322 233577899998 5
Q ss_pred CCEEEEEecCCeEEEEecCCCe-E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 362 DNYFISGSIDGKVRIWGVCEKR-V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~-~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
...|++++.-+.|++||.+.++ + ..+.-...+++++...|+|+.+++|...|.+..||++.+++.... .+..
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------~kg~ 289 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG------LKGI 289 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc------cCCc
Confidence 7889999999999999998754 3 345556788999999999999999999999999999988765331 2333
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 493 (667)
.+.|++|..+|.+ .++++++-|..|||+|+.+.....+.+ -...++.+.+.+
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 5889999999984 899999999999999987633322222 233455555543
No 230
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.7e-10 Score=123.51 Aligned_cols=203 Identities=17% Similarity=0.180 Sum_probs=129.5
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeC-CC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEE-EecCCe--EE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSM-DK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFIS-GSIDGK--VR 375 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~s-gs~Dg~--v~ 375 (667)
..+..+...+.+..|+||| .|+..+. ++ .|.+||+.+++...............|+| +++.|+. .+.++. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 3444556788899999999 6665543 33 58888998887654443334455789999 8887764 455664 88
Q ss_pred EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CCc--EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TGT--CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg~--i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
++|+.+++...+..+.......+|+|||+.|+..+. +|. |.++|+.+++.. .+...+ .......|+|+|
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~~g------~~~~~~~~SpDG 361 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTFEG------EQNLGGSITPDG 361 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEecCC------CCCcCeeECCCC
Confidence 889998888777666666788999999998887654 344 555566555432 222222 223456899998
Q ss_pred CeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEEcCCCC
Q 005956 453 SQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-C--RVYVWNYDELC 516 (667)
Q Consensus 453 ~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-g--~I~iWd~~~~~ 516 (667)
..++++...++ .|.++|+......... .........|+|||++|+..+.+ + .+++++.+...
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 55445444455 4555676543222111 11122345899999998876543 3 47777875443
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.2e-10 Score=112.17 Aligned_cols=148 Identities=14% Similarity=0.295 Sum_probs=101.5
Q ss_pred EEEEeeCCCCEEEEEec----------CCeEEEEec--CCCeEEEe-cccCCceEEEEEeeCCCEEEEE--ecCCcEEEE
Q 005956 354 CVQFNPIDDNYFISGSI----------DGKVRIWGV--CEKRVVDW-ADVRDVISAICYIPDGKGFIVG--SITGTCHFY 418 (667)
Q Consensus 354 ~l~f~p~d~~~l~sgs~----------Dg~v~iwdl--~~~~~~~~-~~~~~~v~~v~~spdg~~l~~g--s~dg~i~l~ 418 (667)
.+.|+| .|++|+.-.. -+...+|.+ .......+ ....+.|.+++|+|+|+.|++. ..++.+.+|
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 567777 6666554332 123445544 33333332 2234569999999999987664 456799999
Q ss_pred EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
|++.... ..+. ...+..+.|+|+| ++|++++. .|.|.+||..+....... ....++.++|+|||
T Consensus 89 d~~~~~i----~~~~------~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVKGKKI----FSFG------TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPDG 155 (194)
T ss_pred cCcccEe----Eeec------CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCCC
Confidence 9962211 1222 2567899999997 67777664 467999999866555444 33457899999999
Q ss_pred CEEEEEeC------CCcEEEEEcCCC
Q 005956 496 KHIISIGD------DCRVYVWNYDEL 515 (667)
Q Consensus 496 ~~l~sgs~------Dg~I~iWd~~~~ 515 (667)
++|+++.. |+.++||++...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CEEEEEEeccceeccccEEEEEecCe
Confidence 99999864 788999999754
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.34 E-value=2.9e-11 Score=124.94 Aligned_cols=162 Identities=21% Similarity=0.410 Sum_probs=117.9
Q ss_pred cccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 222 KGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 222 ~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
+..|+|++|-|.+. .++.+-.+|.+.+||....... ..+ .+..........+..... .....
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~---t~p--~~~~~k~~~~f~i~t~ks------------k~~rN 281 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA---TAP--SYQALKDGDQFAILTSKS------------KKTRN 281 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---CCC--cccccCCCCeeEEeeeec------------cccCC
Confidence 47899999998554 5555677999999987421100 000 011111111111111000 01124
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
|+..+.--.+.|+..+|+||| +||+.+.||.+||+|..+.+.+..++ --+...|++|+| |++||++|+.|..|.||.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEE
Confidence 556665556699999999999 99999999999999999988877765 456789999999 999999999999999999
Q ss_pred cCCCeEEE-ecccCCceEEEEEee
Q 005956 379 VCEKRVVD-WADVRDVISAICYIP 401 (667)
Q Consensus 379 l~~~~~~~-~~~~~~~v~~v~~sp 401 (667)
+..++++. -.+|+..|+.|+|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 99999886 578999999999998
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=1.7e-09 Score=114.58 Aligned_cols=240 Identities=16% Similarity=0.158 Sum_probs=147.7
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-cCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~iw 377 (667)
+.+.++......-..+.|+||+ +++.++.|+.|.++|+.+++.+..+.......++++++ |+++++++. ..+.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP-DGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE---TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC-CCCEEEEEecCCCceeEe
Confidence 3455565443434457899999 88888999999999999999999999888889999999 999888775 68999999
Q ss_pred ecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEE
Q 005956 378 GVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 378 dl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~ 447 (667)
|..+.+++.... ....+.++..+|....+++.-. .+.|.+.|....+.... .+.. ........
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-------g~~~~D~~ 178 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-------GRFPHDGG 178 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------TTEEEEE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-------cccccccc
Confidence 999988775332 2345778888888886666555 47888888776543322 2211 24567889
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcceeeEE--------------------------eC---------------------
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFK--------------------------GL--------------------- 480 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~--------------------------~~--------------------- 480 (667)
|.|++..++++....+.|-++|..+...... .+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 9999755555556666777777543211110 00
Q ss_pred -------CCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCCccccccc--cCccceeEEccCCcEEEEe-cCCC
Q 005956 481 -------PKSGSQMSASFTTTGKHIISI----GDDCRVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQ-WPGI 546 (667)
Q Consensus 481 -------~~~~~v~~v~~spdg~~l~sg----s~Dg~I~iWd~~~~~~~~~~~~--~~~~~~~~fs~dg~~lav~-w~~~ 546 (667)
...+...-+..+|++++|.+. ...+.|.|+|.++.+....... ....-...|++||..+-++ |...
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 001111446679999999998 4458999999999865433221 2225567999999977664 5555
Q ss_pred C
Q 005956 547 G 547 (667)
Q Consensus 547 ~ 547 (667)
+
T Consensus 339 ~ 339 (369)
T PF02239_consen 339 G 339 (369)
T ss_dssp T
T ss_pred C
Confidence 4
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.8e-10 Score=123.40 Aligned_cols=206 Identities=13% Similarity=0.163 Sum_probs=136.9
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCC-
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDG- 372 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg- 372 (667)
+.....+..+...+....|+|+| .|+..+.+ ..|.+||+.+++..........+....|+| +++.|+ +.+.++
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~ 266 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGN 266 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCC
Confidence 34455666777889999999999 77665543 368999999887765554455566789999 888776 444454
Q ss_pred -eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 373 -KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 373 -~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
.|++||+.+++...+..+........|+|||+.|+..+. +| .|.++++.+++.. .+...+ .......|
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~lt~~~------~~~~~~~~ 338 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RVTFVG------NYNARPRL 338 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCC------CCccceEE
Confidence 588889999887776666666778899999998887664 33 4666676665532 222211 22345789
Q ss_pred ccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCC
Q 005956 449 SRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDEL 515 (667)
Q Consensus 449 sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~ 515 (667)
+|+|...+++...++ .|.++|+.....+... .........|+|||++|+..+.+ ..|++++++..
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 999744444443344 5788887643222211 11222356899999999877654 35777777544
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.32 E-value=1.7e-10 Score=129.56 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=160.7
Q ss_pred eecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCC-------CeEeEEee-CCCcEEEEEE
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQF 357 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f 357 (667)
+..+..-|...+..+..+..|...|..++.++.. +++|||.||+|++||... .++..++. ....+.++.+
T Consensus 1027 ~~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1027 VGSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred cCCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe
Confidence 3345556777888899999999999999988654 999999999999999753 23344444 6678999999
Q ss_pred eeCCCCEEEEEecCCeEEEEecCCCe-------EEEecc--cCCc-eEEEEEee-CCC-EEEEEecCCcEEEEEecCCcc
Q 005956 358 NPIDDNYFISGSIDGKVRIWGVCEKR-------VVDWAD--VRDV-ISAICYIP-DGK-GFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 358 ~p~d~~~l~sgs~Dg~v~iwdl~~~~-------~~~~~~--~~~~-v~~v~~sp-dg~-~l~~gs~dg~i~l~d~~~~~~ 425 (667)
.+ .++.++.++.||.|++.++.... .....+ ..+. +..-+|.. .+. .++.++..+.|..||++....
T Consensus 1107 ~~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1107 CG-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred cc-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 99 89999999999999999987621 111111 1122 33333433 233 688899999999999987554
Q ss_pred eee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCC---CEEE
Q 005956 426 KLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTG---KHII 499 (667)
Q Consensus 426 ~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg---~~l~ 499 (667)
... +.. ...+.|++++.+|.+ .++++|+..|.+.+||++ ..+..+.. ++..++..+..+|-. ..++
T Consensus 1186 ~w~lk~~------~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~-P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1186 AWRLKNQ------LRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEH-PARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred HHhhhcC------ccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccC-cccCCcceEEeeccCCCCceEE
Confidence 332 111 123889999999985 799999999999999987 33444433 355788888776643 4555
Q ss_pred EEe--CCCcEEEEEcCCCCccc
Q 005956 500 SIG--DDCRVYVWNYDELCFPS 519 (667)
Q Consensus 500 sgs--~Dg~I~iWd~~~~~~~~ 519 (667)
+++ ..+-|-+|++.++.+..
T Consensus 1258 s~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EecccCCCceeeeecccCcceE
Confidence 554 46789999999986543
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.2e-10 Score=124.78 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=136.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.+..|...+...+|+|||++||.+..+ ..|.+||+.++..
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------------------------------------ 226 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------------------------------------ 226 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------------------------------------
Confidence 4556677789999999999999988754 4799999875321
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
..+..+...+.+++|+|++ .|+ +.+.++ .|.+||+.++.......+........|+| +++.|+..
T Consensus 227 ----------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~-dg~~l~~~ 295 (417)
T TIGR02800 227 ----------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP-DGKSIAFT 295 (417)
T ss_pred ----------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECC-CCCEEEEE
Confidence 1222344456678999998 554 555444 58889998887665555555556779999 88888776
Q ss_pred ecC-C--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SID-G--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~D-g--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.. + .|+++|+.+++...+......+..+.|+|+|++++.+..++ .|.+||+.+..... +. . ...
T Consensus 296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~--l~--~-----~~~ 366 (417)
T TIGR02800 296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV--LT--D-----TGL 366 (417)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE--cc--C-----CCC
Confidence 643 2 58888998887766655566678889999999999988775 78888887643321 11 1 012
Q ss_pred eEEEEEccCCCeEEEEEeCCC--cEEEEEC
Q 005956 443 ITGIQFSRDESQRIMITSEDS--KLRILDG 470 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg--~I~iwd~ 470 (667)
.....|+|+|..++++...++ .+++.+.
T Consensus 367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 367 DESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 345689999744444444443 3455553
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=1.1e-08 Score=108.22 Aligned_cols=248 Identities=16% Similarity=0.189 Sum_probs=158.3
Q ss_pred cEEEEEEcCCCCEEEEEEC----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 224 CIWTLKFSPDGRYLASGGE----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.-..++++|++++|.+..+ +|.|..|++.... +.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~------------------g~L----------------------- 76 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT------------------GTL----------------------- 76 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT------------------TEE-----------------------
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc------------------cee-----------------------
Confidence 3456889999999999987 4688888877420 010
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCC-CeEeEE---ee-----------CCCcEEEEEEeeCCC
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGC-NQCLNV---FD-----------HHNYVTCVQFNPIDD 362 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~-~~~~~~---~~-----------h~~~V~~l~f~p~d~ 362 (667)
..+............++++|++ +|+++. .+|+|.++++.. +..... +. ......++.|+| ++
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg 155 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DG 155 (345)
T ss_dssp EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TS
T ss_pred EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CC
Confidence 1122222233445678899999 666665 589999999986 443322 22 234678999999 88
Q ss_pred CEEEEEec-CCeEEEEecCCCe--EEE----ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEec--CCcceee-eEe
Q 005956 363 NYFISGSI-DGKVRIWGVCEKR--VVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLE-KVD 431 (667)
Q Consensus 363 ~~l~sgs~-Dg~v~iwdl~~~~--~~~----~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~--~~~~~~~-~~~ 431 (667)
+++++... ...|.+|++.... +.. ..........++|+|+|+++.+.. .++.|.+|++. .+.+... .+.
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 88877653 3579999997654 322 234556789999999999887765 56789999998 3333222 222
Q ss_pred eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEE-eCCCCCCeEEEEEcCCCCEEEEEe-CCCc
Q 005956 432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFK-GLPKSGSQMSASFTTTGKHIISIG-DDCR 506 (667)
Q Consensus 432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs-~Dg~ 506 (667)
..............|.++|||..++++....+.|.+|++.. ...... ..........++++|+|++|+++. .++.
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 11111111236789999999744444555677899999731 122211 111345589999999999999887 4578
Q ss_pred EEEEEcC
Q 005956 507 VYVWNYD 513 (667)
Q Consensus 507 I~iWd~~ 513 (667)
|.+|+++
T Consensus 316 v~vf~~d 322 (345)
T PF10282_consen 316 VSVFDID 322 (345)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999874
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.5e-10 Score=122.86 Aligned_cols=287 Identities=16% Similarity=0.242 Sum_probs=191.4
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.....|+.|+....|+|+||.||.++|-.+.+.... . +..- +..+. .-..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d-------~---------~~~g---------laa~s-----nLsm 63 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD-------L---------NKSG---------LAAAS-----NLSM 63 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCc-------c---------cccc---------ccccc-----ccch
Confidence 456789999999999999999999999988763210 0 0000 00000 0123
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
-+++.||.+.|.-+.|+.+. .|-|+..+|.|.||-+-.+.-.... ...+.|.++.|+. +|..++....||.|.+=
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEE
Confidence 46789999999999999887 8889999999999998776533222 3566899999999 99999999999999888
Q ss_pred ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce---ee-eEeeccccCcCCCCeEEEEEc----
Q 005956 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK---LE-KVDFHDRKKTSGNKITGIQFS---- 449 (667)
Q Consensus 378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~---~~-~~~~~~~~~~~~~~I~~l~~s---- 449 (667)
.+...++....-.......+.|++|.+.++.+-.+|.+++||...+-.. .. .+...+.....+.+|..+.|.
T Consensus 143 svdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 143 SVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 8877766532222233557889999999999999999999998754211 11 122222222233456667763
Q ss_pred ----cCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---------cEEEEEcCCC
Q 005956 450 ----RDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---------RVYVWNYDEL 515 (667)
Q Consensus 450 ----p~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---------~I~iWd~~~~ 515 (667)
|+ ...++++-..|.+.|..-. +....... ..-.+..+.|+++|..||.+|.|. .|.+|..-+.
T Consensus 223 ~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~ 299 (1189)
T KOG2041|consen 223 QPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH 299 (1189)
T ss_pred ccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh
Confidence 34 4689999999998887533 22222222 236688899999999999998653 4555543322
Q ss_pred CccccccccCccceeEEccCCcEEEEe
Q 005956 516 CFPSSKQKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 516 ~~~~~~~~~~~~~~~~fs~dg~~lav~ 542 (667)
-....+.....++.+.|...|-.+|++
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEE
Confidence 222222233334444555555555544
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.1e-11 Score=124.54 Aligned_cols=254 Identities=19% Similarity=0.235 Sum_probs=188.2
Q ss_pred eccccccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 218 IQAHKGCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 218 l~~H~~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+|...|...+|-|. .+-|++++.||.|++=.+.....
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~--------------------------------------- 221 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY--------------------------------------- 221 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc---------------------------------------
Confidence 4589999999999884 46899999999999876653110
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe----eCCC---cEEEEEEeeCCCCEEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF----DHHN---YVTCVQFNPIDDNYFI 366 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~---~V~~l~f~p~d~~~l~ 366 (667)
......+..|.+.|.-++.-|+. .|++++.|+.+.-.|+.++.+...+ .+.. ....++.+|.+.++++
T Consensus 222 ---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 222 ---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 11234456799999999999987 8999999999999999887654444 2333 5778999998888999
Q ss_pred EEecCCeEEEEecCCCeEE-------Eec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc--------
Q 005956 367 SGSIDGKVRIWGVCEKRVV-------DWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-------- 425 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~-------~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-------- 425 (667)
+|+.|..+++||.+.-... .+. ...-.|++++|+.++.-+++...|-.|++|.-..+..
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 9999999999998752211 111 2334599999999999999999999999995443222
Q ss_pred --eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 426 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 426 --~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
......+.+|.+ ...|.++-|-.-...++++|+.-|.|.||+-. ..++...+..| .|+|+.-+|--..||+.
T Consensus 379 ~~~~~k~vYKGHrN--~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 379 REQYVKRVYKGHRN--SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASS 454 (559)
T ss_pred hhhccchhhccccc--ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhcc
Confidence 111111233322 23488888754335899999999999999965 34555555433 88999999999999999
Q ss_pred eCCCcEEEEEcCCCCc
Q 005956 502 GDDCRVYVWNYDELCF 517 (667)
Q Consensus 502 s~Dg~I~iWd~~~~~~ 517 (667)
|-|..|+||-..+.+.
T Consensus 455 Gid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 455 GIDHDVKIWTPLTAER 470 (559)
T ss_pred CCccceeeecCCcccc
Confidence 9999999998865543
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.2e-10 Score=122.32 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=137.3
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEEC-CC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~-Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.+..+...+.+..|||||++|+..+. ++ .|.+||+.++...
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~----------------------------------- 255 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE----------------------------------- 255 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------------------------------
Confidence 445567788999999999999887654 33 4777777653221
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCc--EEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKT--VRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~--I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.+..+. +......|+|+| .|+ +.+.++. |.++|+.+++......+........|+| +++.|+..
T Consensus 256 --------~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~ 323 (448)
T PRK04792 256 --------KVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFT 323 (448)
T ss_pred --------EecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEE
Confidence 111112 223467999999 554 5566665 7778988887665555656677889999 88877766
Q ss_pred ec-CC--eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SI-DG--KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~-Dg--~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+. ++ .|+++|+.+++...+..........+|+|||++|+..+.+ + .|.++|+.++.... +. .. ..
T Consensus 324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--lt--~~-----~~ 394 (448)
T PRK04792 324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--LT--ST-----RL 394 (448)
T ss_pred ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--cc--CC-----CC
Confidence 54 33 5777788888766543333334457899999999886653 4 34556766654322 11 10 11
Q ss_pred eEEEEEccCCCeEEEEEeCCCc--EEEEECCc-ceeeEEeCCCCCCeEEEEEcC
Q 005956 443 ITGIQFSRDESQRIMITSEDSK--LRILDGVD-VIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~--I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp 493 (667)
.....|+|+|..++++...++. +++++... ....+.. +.+.+...+|+|
T Consensus 395 d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 395 DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 2244799998555555555554 66667542 2222222 344566677776
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.9e-10 Score=118.48 Aligned_cols=232 Identities=9% Similarity=0.061 Sum_probs=162.9
Q ss_pred ccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-----------------------------C-------
Q 005956 307 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-----------------------------H------- 348 (667)
Q Consensus 307 gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-----------------------------h------- 348 (667)
+|...-+.|..+||| .+++|...-.|++||+..-.....-. |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 577888999999999 67788888899999986432211000 0
Q ss_pred ----CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 349 ----HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 349 ----~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
...-..++++..... |++++....|+-+++..|+.+.... ..+.++++..++-..+|++|+.+|.+.+||.++.
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 011123333332333 4444455678889999999876444 4478999999999899999999999999999976
Q ss_pred cceeeeEeeccccCcCC-----CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCC--C
Q 005956 424 DLKLEKVDFHDRKKTSG-----NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTT--G 495 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~-----~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spd--g 495 (667)
..... +....+...+. ..|+++.|+.+| -.+++|..+|.|.|||++... ...+.+....+|..+.|-+. +
T Consensus 208 srv~~-l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 208 SRVGT-LDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhee-eecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 55432 22222222222 349999999985 899999999999999998543 33445567788999999665 4
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956 496 KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~ 542 (667)
+.|++. +...++|||-.+++............-.+|-|++.++.++
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 456554 3568999999999876665555556666788877766665
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.5e-10 Score=120.66 Aligned_cols=220 Identities=14% Similarity=0.100 Sum_probs=140.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.+..|...+...+|||||++|+..+.+ ..|.+|++.++...
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----------------------------------- 236 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----------------------------------- 236 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-----------------------------------
Confidence 4566778889999999999999877644 35888888753221
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.+....+.+....|+|+| .|+ +...++ .|.+||+.+++......+........|+| +++.|+..
T Consensus 237 -----------~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp-Dg~~i~f~ 304 (430)
T PRK00178 237 -----------QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK-DGRTLYFT 304 (430)
T ss_pred -----------EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECC-CCCEEEEE
Confidence 111122334568999999 555 555555 58888999887766555555667789999 88877766
Q ss_pred ec-C--CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SI-D--GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~-D--g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+. + ..|+++|+.+++...+...........|+|||+.++..... + .|.+||+.++.... +.. . ..
T Consensus 305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~-~------~~ 375 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTD-T------SL 375 (430)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccC-C------CC
Confidence 54 3 35888888888765543333334567899999999887653 3 47788887765422 111 1 11
Q ss_pred eEEEEEccCCCeEEEEEeCCC--cEEEEECCcc-eeeEEeCCCCCCeEEEEEcC
Q 005956 443 ITGIQFSRDESQRIMITSEDS--KLRILDGVDV-IHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp 493 (667)
.....|+|+|..++++...++ .|.+++.... ...+.. +.+.+...+|+|
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~--~~g~~~~p~ws~ 427 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPT--AQGEVREPSWSP 427 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 224589999855555554444 4666666432 222222 344556666765
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3e-09 Score=111.14 Aligned_cols=196 Identities=13% Similarity=0.198 Sum_probs=131.3
Q ss_pred ccccceEEEEecCCC---eEEE-----EeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecC---
Q 005956 307 GHKGDVLDLAWSNSN---YLLS-----CSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSID--- 371 (667)
Q Consensus 307 gh~~~V~~l~~s~~~---~l~s-----~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~D--- 371 (667)
-|...|+.+.++|.+ .+++ .|.-..|+||............ ....=..+.|++....+|+.++.|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 355677888888884 3333 3445578888775322211111 122233567777444445444432
Q ss_pred --------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE--EecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 372 --------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 372 --------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~--gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
.+++++++.+..+.......++|.+++|+|+|+.+++ |..-..+.|||++..-. . .+. .+
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~---df~------eg 312 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F---DFP------EG 312 (566)
T ss_pred CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E---eCC------CC
Confidence 4688888886666666667899999999999987766 55677899999985432 1 121 26
Q ss_pred CeEEEEEccCCCeEEEEEeC---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEc
Q 005956 442 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD------DCRVYVWNY 512 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------Dg~I~iWd~ 512 (667)
+-+.+-|+|.| ++|+.++- .|.|-|||..+.....+. .....+-+.|+|||.|++|+.. |+.++||++
T Consensus 313 pRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 313 PRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CccceEECCCC-CEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 77889999997 66666654 479999998874443333 3344567899999999998863 688999999
Q ss_pred CCC
Q 005956 513 DEL 515 (667)
Q Consensus 513 ~~~ 515 (667)
.+.
T Consensus 390 tG~ 392 (566)
T KOG2315|consen 390 TGS 392 (566)
T ss_pred cCc
Confidence 865
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.9e-09 Score=113.42 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=146.2
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAI 397 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v 397 (667)
.++-|...|.|.+|++..++....+. |.+.|.++.++. +-..|.+++.|+.+..|+...++... +......+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 78889999999999999999988874 999999999998 88899999999999999999998775 66677789999
Q ss_pred EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC-----CCeEEEEEeCCCcEEEEECCc
Q 005956 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD-----ESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~-----g~~~l~~~s~dg~I~iwd~~~ 472 (667)
|++|||..+++++ +.|.+||+++.+.... ...|.++|.+++|..+ |..+|.+...+.-|.+|-...
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~~-------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVIT-------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEEE-------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999876 5899999998876543 3345689999999776 534444555566677775331
Q ss_pred ------ceeeEEeCCCCCCeEE-EEEcCCCC--EEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 473 ------VIHKFKGLPKSGSQMS-ASFTTTGK--HIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 473 ------~~~~~~~~~~~~~v~~-v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
..+.+.. ...++.. --...++. +.++.+..+.++.|...........+...+..+..++.+| ++|+.|
T Consensus 222 ~~kkks~~~sl~~--~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~~s~g-~~a~~~ 298 (541)
T KOG4547|consen 222 EDKKKSLSCSLTV--PDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNADSSKG-FLAALF 298 (541)
T ss_pred ccccchhheeecc--CCCCeEeccccccccccceEEeeeccCceeeeccccHHHHhcCccccccceeeecccc-hhhhhc
Confidence 2222222 1222221 11223333 4444444444555554444333333333444455666666 677777
Q ss_pred CCCC
Q 005956 544 PGIG 547 (667)
Q Consensus 544 ~~~~ 547 (667)
..+.
T Consensus 299 ~~~~ 302 (541)
T KOG4547|consen 299 GIDK 302 (541)
T ss_pred ccch
Confidence 6655
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.8e-09 Score=113.88 Aligned_cols=208 Identities=10% Similarity=0.055 Sum_probs=128.7
Q ss_pred ceeeeccccceEEEEecCCC-e--EE-EEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec-----
Q 005956 302 LQELHGHKGDVLDLAWSNSN-Y--LL-SCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI----- 370 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~--l~-s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~----- 370 (667)
...+......+..-.|+||| . ++ ++..++ .|.+.++.+++..+...........+|+| |++.|+..+.
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCc
Confidence 34454455567788999998 3 32 444443 57777998887666655566667789999 9988876553
Q ss_pred CCeEEEEecCC---CeEEEeccc-CCceEEEEEeeCCCEEEEEe-cCCcEEEEEec--CCcceeeeEeeccccCcCCCCe
Q 005956 371 DGKVRIWGVCE---KRVVDWADV-RDVISAICYIPDGKGFIVGS-ITGTCHFYKAS--GNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 371 Dg~v~iwdl~~---~~~~~~~~~-~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~--~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+-.+.+|++.. ++...+... .......+|+|||+.|+..+ .+|...+|.+. ........+.. ....+
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~------~~~~~ 329 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK------KYRNS 329 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc------CCCCc
Confidence 22344477765 333343332 23456789999999888766 46655666543 21111111111 12456
Q ss_pred EEEEEccCCCeEEEEEeCC--CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCc
Q 005956 444 TGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---DCRVYVWNYDELCF 517 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---Dg~I~iWd~~~~~~ 517 (667)
....|+|||..+++++..+ ..|++||+.......... ....+....|+|||++|+..+. ...|++||+.+++.
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7889999974444444433 368999976433222111 2345677899999998875443 35789999987754
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=1.3e-08 Score=107.91 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=135.9
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcE-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEe
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI 400 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~s 400 (667)
++++-..++.|.|.|..+.+.+..+.....+ ..+.|+| |++++++++.||.|.++|+.+++++...........++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 4456677899999999999999999855544 4577899 9999999999999999999999998877777788999999
Q ss_pred eCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccc-cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eE
Q 005956 401 PDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KF 477 (667)
Q Consensus 401 pdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~-~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~ 477 (667)
+||++++++. ..+.+.++|..+.+.... +...+. ......++.++..+|....++++--.-+.|.+.|..+... ..
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9999999876 689999999988766543 222111 1113467888888888655666666678999999664311 11
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCccc
Q 005956 478 KGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 478 ~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~~~ 519 (667)
+............|+|+++|++.+ ..++.|-++|.++.+...
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 122245667789999999987765 456789999998876543
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=1.9e-08 Score=98.36 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=118.7
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC-CCeEeEEee---CCCcEEEEEEeeCCCCEEEE-EecCCeE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVFD---HHNYVTCVQFNPIDDNYFIS-GSIDGKV 374 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~-~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s-gs~Dg~v 374 (667)
+++.++. ...+|.++.+.++..+ .. ..+.|.||... +.+.++.+. ....+.++.-+. +..+|+. |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRDRIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCCeEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceE
Confidence 4444443 4678999999887622 22 34689999987 445555553 233333333222 2333433 3345899
Q ss_pred EEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCc-EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 375 RIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 375 ~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~-i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
.|-|+...+. ..+..|...|.|++.+.+|..+|+++..|+ |||||..++....+.-.... ...|.+++|+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-----~A~iy~iaFSp 236 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-----RADIYCIAFSP 236 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-----hheEEEEEeCC
Confidence 9999987665 678889999999999999999999999996 69999999988766333222 37899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCc
Q 005956 451 DESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
+. .+|+++|..|+|+|+.++.
T Consensus 237 ~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred Cc-cEEEEEcCCCeEEEEEeec
Confidence 95 8999999999999998653
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=7.4e-10 Score=108.89 Aligned_cols=239 Identities=14% Similarity=0.297 Sum_probs=152.3
Q ss_pred cccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 222 KGCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 222 ~~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
...|+.+.|.++++ .++..+.|.+|++|.+.......-.+.... .........+++..... ....+..
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~-~~~~~~~~~lr~p~~~~---------~~~~vea 153 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPE-EGPPGTITSLRLPVEGR---------HDLEVEA 153 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccc-cCCCCccceeeceeecc---------ccceeee
Confidence 34688888988765 667778899999999975332210000000 00000011111110000 0011122
Q ss_pred Ccceeee-ccccceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEe--e------CCCcEEEEEEeeCCCCEEEEEe
Q 005956 300 SPLQELH-GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVF--D------HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 300 ~~~~~l~-gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~--~------h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.|.+.+. +|+-.|.+|.++.|+..+.++.|-.|.+|+++- .++.... + .+.-|++..|+|...+.|+..+
T Consensus 154 ~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 154 SPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 3344443 799999999999999555556678899999863 2332222 1 2346899999998889999999
Q ss_pred cCCeEEEEecCCCeEEE-----------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 370 IDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-----------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
..|+|++.|++...+.. +...-..|..+.|+++|+++++-.. -++++||++....+.....+
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 99999999998644321 1111234888999999999987543 58999999877666665555
Q ss_pred ccccCc------CCCCe---EEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 433 HDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 433 ~~~~~~------~~~~I---~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
+..... ....| ..++|+.++ .++++|+..+..+++++.+
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCC
Confidence 543211 11222 457888885 7999999999999999653
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=2.5e-10 Score=111.40 Aligned_cols=190 Identities=14% Similarity=0.224 Sum_probs=135.5
Q ss_pred ccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCC-CEEEEEecCCeEEEEecCCCeE
Q 005956 309 KGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 309 ~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~-~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
-..|.-+.|..+. .|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .++.+...+-.|.+|.+.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecccee
Confidence 3568889999888 45566788899999999888777775 677899999999 77 5666777899999999999988
Q ss_pred EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464 (667)
Q Consensus 385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~ 464 (667)
....-.+..+..++|+|||++.+..+.-.....+++...+ .+.+-++.+...-..+++.|+||| . .
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~----~W~ll~~f~~dT~DltgieWsPdg-~---------~ 192 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK----AWILLKEFKLDTIDLTGIEWSPDG-N---------W 192 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH----HHHHHHhcCCCcccccCceECCCC-c---------E
Confidence 8777777778999999999999988764322222221100 111122223333557899999997 3 3
Q ss_pred EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 465 I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+.|||..-....+ ....+-.+..++|+|.+++|+.|+.|+.++|-|--+
T Consensus 193 laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 193 LAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred EEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 5567743111111 111345688999999999999999999998876433
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=1e-09 Score=108.03 Aligned_cols=240 Identities=13% Similarity=0.253 Sum_probs=160.8
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-C------------ceeeeeeCCCCC-ccccCCCCeE
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-V------------AASCKSFTDDGG-FGSNAKEGKI 276 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-~------------~~~~~~~~~~~~-~~~~~~~~~~ 276 (667)
++.+.+.++||.+.|++...-|-..-+++.+.|.++|||--.+ + .+.+..+..... +......+.+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 3455677889999999999999888899999999999995332 1 122222222221 1111111111
Q ss_pred EecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEE
Q 005956 277 KFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCV 355 (667)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l 355 (667)
.- ..... .++ .-...+....|...|..+-|+... .+++.+.|+.+.---.+.+..+..+......+++
T Consensus 93 te---------fs~se-dfn-km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~ 161 (404)
T KOG1409|consen 93 TE---------FALSE-DFN-KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASAL 161 (404)
T ss_pred EE---------EEhhh-hhh-hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCC
Confidence 11 11110 111 123455667899999999998766 8999999988765555666655555444444455
Q ss_pred EEeeCCCCEEEEEecCCeEEEEecCC---CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 356 QFNPIDDNYFISGSIDGKVRIWGVCE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~Dg~v~iwdl~~---~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
.|.- . +...|...|.|.+..+.. +.+....+|.+.+.+++|.|....+.+|..|..+.+||+..++........
T Consensus 162 ~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 162 QFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred ceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 5543 2 556666667766655433 345568889999999999999999999999999999999877655432222
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
|...|..++..+- ...+++++.||.|.+||..
T Consensus 239 ------h~~kV~~l~~~~~-t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 239 ------HNDKVQALSYAQH-TRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ------chhhhhhhhhhhh-heeeeeccCCCeEEEEecc
Confidence 2467777777665 4789999999999999853
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=1.9e-07 Score=98.82 Aligned_cols=235 Identities=15% Similarity=0.188 Sum_probs=151.1
Q ss_pred cceEEEEecCCC-eEEEEeC----CCcEEEEecCCC--eE--eEEee-CCCcEEEEEEeeCCCCEEEEEec-CCeEEEEe
Q 005956 310 GDVLDLAWSNSN-YLLSCSM----DKTVRMWQVGCN--QC--LNVFD-HHNYVTCVQFNPIDDNYFISGSI-DGKVRIWG 378 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~----Dg~I~iWd~~~~--~~--~~~~~-h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwd 378 (667)
.....|+++|++ +|++... ++.|..|++... ++ +.... .......++++| ++++|+++.. +|.|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence 445668889988 7776665 579999998764 33 33333 455667899999 8888888874 89999999
Q ss_pred cCC-CeEEEe---c-----------ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 379 VCE-KRVVDW---A-----------DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 379 l~~-~~~~~~---~-----------~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.. +.+... . .....+.++.++|+|+++++... ...|.+|++............. ....+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~--~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI--KVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE--ECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc--ccccCCC
Confidence 987 443321 1 12345789999999998888653 4589999998766322211100 1123466
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECC--cc----eeeEEeC----CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGV--DV----IHKFKGL----PKSGSQMSASFTTTGKHIISIG-DDCRVYVWN 511 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~----~~~~~~~----~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd 511 (667)
-..+.|+|++...+++.-.++.|.+++.. .. .+..... ........++++|||++|+++. ..+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 78999999985566666778889999865 21 1122211 1123678899999999998876 457899999
Q ss_pred cCC--CCccccc--c-ccCccceeEEccCCcEEEEecCCCC
Q 005956 512 YDE--LCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 512 ~~~--~~~~~~~--~-~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
++. +...... . .......+.|+|+|.+|+++-....
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 943 3332221 1 1223456799999999999765544
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=8e-09 Score=112.16 Aligned_cols=208 Identities=9% Similarity=0.013 Sum_probs=132.0
Q ss_pred CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE--E-EEEecC--CeEEEEecCCCeEEEecccCCceEEEEEeeCCC
Q 005956 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY--F-ISGSID--GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK 404 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~--l-~sgs~D--g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~ 404 (667)
+.|.+.|.+.+...........+..-+|+| |++. + ++...+ ..|.+.++.+++...+....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 367777887666655545556677889999 8764 3 233333 358888999888777666677777889999999
Q ss_pred EEEEEec-CC----cEEEEEecCCcc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc---c
Q 005956 405 GFIVGSI-TG----TCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD---V 473 (667)
Q Consensus 405 ~l~~gs~-dg----~i~l~d~~~~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~---~ 473 (667)
.|+..+. +| .+.+|++..+.. ....+. .. .........|+|||..++++...+|...|| ++.. .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEee-cC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 9887653 23 233466554211 111111 11 112346789999985455555566755555 4421 1
Q ss_pred eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCC
Q 005956 474 IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 474 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
...+.. +...+....|||||++|+..+.+ ..|++||+.+++...............|+|||+.|++....
T Consensus 319 ~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 319 PRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred eEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence 222222 33456788999999999876543 47999999988765443333334457899999999876553
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=2.1e-09 Score=119.54 Aligned_cols=190 Identities=13% Similarity=0.165 Sum_probs=151.5
Q ss_pred EEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE-----EEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEe
Q 005956 315 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-----CVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDW 387 (667)
Q Consensus 315 l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~-----~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~ 387 (667)
..+...+ .++....+..+.+||...+..+....+....+ -+.+++ +.-++++|+.-+.|.+|+.... .....
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCccee
Confidence 3333344 88888889999999999888777776554322 234455 6778999999999999998743 34468
Q ss_pred cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 388 ~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
.+|.+.|.++.++-||+++++.+.|.++++|++.+.+... ..--.|..+|..+.|.|+ .+++++.|.+.++
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrv 242 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRV 242 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------cccccccceeEEEEeccc---eeEEeccceEEEE
Confidence 8999999999999999999999999999999999877653 123345689999999996 8999999999999
Q ss_pred EECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 468 LDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 468 wd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
|+.. .....+..+ ....+..++..++...++|++.|+.+++|++...
T Consensus 243 W~~~~~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9755 233355553 4567899999999999999999999999998653
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=7.2e-07 Score=89.39 Aligned_cols=254 Identities=16% Similarity=0.248 Sum_probs=170.9
Q ss_pred ccccccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
-++.+..+-|+|+|++++|.++-.+ |.|..|.++.. +|.+.+..
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~------------------~G~Lt~ln--------------- 82 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD------------------DGRLTFLN--------------- 82 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC------------------CCeEEEee---------------
Confidence 3677889999999999999998654 66777777631 11111110
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeC-CCcEEEEecCC-CeE---eEEeeCCCc----------EEEEEEee
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGC-NQC---LNVFDHHNY----------VTCVQFNP 359 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~-~~~---~~~~~h~~~----------V~~l~f~p 359 (667)
...+.|+ +-..+++++++ +|+++.. -|.|.++-+.. |.. +..+.|... +....|.|
T Consensus 83 ------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 83 ------RQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred ------ccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 1111222 22778899999 6666654 57999999865 433 344456655 88999999
Q ss_pred CCCCEEEEEecC-CeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeec
Q 005956 360 IDDNYFISGSID-GKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 360 ~d~~~l~sgs~D-g~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
+++++++.... ..|.+|++..+++.. ..........|.|+|++++..+.+ -+++|.+|...........++..
T Consensus 155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred -CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 99999887643 469999999887653 234556689999999999987765 58899999998753333322221
Q ss_pred cc---cCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCc--ceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 434 DR---KKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVD--VIHKFKG--LPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 434 ~~---~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~~--~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
.. .-........|..+++| ++|.++.. ...|.+|.+.. ....+.. ..+........|++.|++|+++..++
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred ccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 11 11234567789999997 66666643 44788886542 2222221 22445578899999999999998764
Q ss_pred -cEEEEEcCCC
Q 005956 506 -RVYVWNYDEL 515 (667)
Q Consensus 506 -~I~iWd~~~~ 515 (667)
.|.+|.++..
T Consensus 313 d~i~vf~~d~~ 323 (346)
T COG2706 313 DNITVFERDKE 323 (346)
T ss_pred CcEEEEEEcCC
Confidence 6888887654
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.07 E-value=3.5e-07 Score=95.00 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=147.1
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 230 FSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 230 fspdg~~Latgs~----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+||||+.|+.+.. +..|.|||+.++........+ .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-----------------------------------~ 97 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-----------------------------------E 97 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-----------------------------------C
Confidence 9999998887765 789999999985443211100 0
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEe-C-CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCS-M-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~-Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
+|.. . .......++++||| +|+... . +..|.+.|+.+++.+..+.-.+...-...++ +..+ .-+.||....
T Consensus 98 ~p~~--~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~ 171 (352)
T TIGR02658 98 GPRF--L-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAK 171 (352)
T ss_pred Cchh--h-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEE
Confidence 0000 0 11233467889999 666554 3 7899999999999999887544333333332 2222 2234555544
Q ss_pred EecCC-CeEEE----eccc-CCce-EEEEEee-CCCEEEEEecCCcEEEEEecCCcceee-eEeecccc----CcCCCCe
Q 005956 377 WGVCE-KRVVD----WADV-RDVI-SAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK----KTSGNKI 443 (667)
Q Consensus 377 wdl~~-~~~~~----~~~~-~~~v-~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~----~~~~~~I 443 (667)
..+.+ ++... .... ...+ ..-.|.+ +|+++.+... |+|.+.|+.+...... .+...... .-..+.+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 33322 22111 1111 0000 0014456 8888877776 9999999765443322 22221110 0123445
Q ss_pred EEEEEccCCCeEEEEE---------eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEc
Q 005956 444 TGIQFSRDESQRIMIT---------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNY 512 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~---------s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~Dg~I~iWd~ 512 (667)
..++++|+++..++.. ...+.|.++|..+........ -...+..++++||++ +|++.. .++.|.|.|.
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 5599999975444433 122589999988655544443 356789999999999 888776 5788999999
Q ss_pred CCCCcccc
Q 005956 513 DELCFPSS 520 (667)
Q Consensus 513 ~~~~~~~~ 520 (667)
.+++....
T Consensus 330 ~t~k~i~~ 337 (352)
T TIGR02658 330 ETGKELSS 337 (352)
T ss_pred cCCeEEee
Confidence 98865433
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=2.2e-07 Score=109.01 Aligned_cols=281 Identities=11% Similarity=0.202 Sum_probs=170.2
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC-----CccccCCCCeEEecccCCCCcee--ecCCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-----GFGSNAKEGKIKFGKKKSSHVPV--VIPDE 293 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 293 (667)
-...|.+++||||+..||..+.+++|.+..-.=.........++. .+..+......-+ ....+.... ...+.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCC
Confidence 356899999999999999999999988874331111111111111 0111111000000 000000000 00000
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeC---C---CcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---D---KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~---D---g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l 365 (667)
+ .......+. +...-..|+|-.|| +++..+. . ..+|||+-+ |....+-. -.+--.+++|.| .|++|
T Consensus 198 ~---~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lI 271 (928)
T PF04762_consen 198 V---PKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLI 271 (928)
T ss_pred C---CccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEE
Confidence 0 001112233 55566789999999 7776664 2 578999876 54433332 222345789999 99999
Q ss_pred EEEec---CCeEEEEecCCCeEEE----ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccC
Q 005956 366 ISGSI---DGKVRIWGVCEKRVVD----WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKK 437 (667)
Q Consensus 366 ~sgs~---Dg~v~iwdl~~~~~~~----~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~ 437 (667)
++... ...|.+|.-++-+--. .......|..++|++|+..||+...+. |.+|-..+...-.+ .+.+...
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-- 348 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-- 348 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC--
Confidence 88765 3567788755533222 224456799999999999999977664 99999988776555 3433322
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC-----------------------Ccce-------------eeEEeCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDG-----------------------VDVI-------------HKFKGLP 481 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~-----------------------~~~~-------------~~~~~~~ 481 (667)
..+..+.|+|.....|.+...+|.+..++. .+.. ..+.. .
T Consensus 349 ---~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~ 424 (928)
T PF04762_consen 349 ---ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-E 424 (928)
T ss_pred ---CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-c
Confidence 345559999987777777777666655431 1100 00011 1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
-..+|.+++|++++..+++-..||.|.+|.....
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 3568999999999988999999999999986543
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=2.2e-09 Score=119.45 Aligned_cols=148 Identities=24% Similarity=0.437 Sum_probs=125.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 307 (667)
Q Consensus 228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 307 (667)
+-++++.-|+++|+.-+.|.+|+... ...+. .+.|
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------------------dn~p~-~l~G 173 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHE--------------------------------------------DNKPI-RLKG 173 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccc--------------------------------------------cCCcc-eecc
Confidence 44577777999999999999998863 12233 6789
Q ss_pred cccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE--EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
|.+.|.++.|+.+| ++++.|.|.++|+|++++.+... .|+|+..|+.+.|.| + .+++++.|.+.++|+....++
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEeccccee
Confidence 99999999999999 99999999999999999988765 567999999999998 4 999999999999998777766
Q ss_pred EEeccc-CCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 385 VDWADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 385 ~~~~~~-~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
..+..| ...+..+++.++...+++++.||.+++|++...
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 655555 356899999998889999999999999998643
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.00 E-value=1.1e-07 Score=98.41 Aligned_cols=266 Identities=13% Similarity=0.151 Sum_probs=173.2
Q ss_pred cEEEEEEcCCCCEEEEEECCCc---------------EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 224 CIWTLKFSPDGRYLASGGEDGV---------------VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~---------------I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
.|.-+.|||.++||.|-+..+. +.|||+.++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-------------------------------- 120 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-------------------------------- 120 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee--------------------------------
Confidence 4888999999999999765443 66666665322
Q ss_pred ecCCCcccccCCcceeeeccccc--eE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEe-EEee--CCCcEEEEEEeeC-
Q 005956 289 VIPDEVFQIEESPLQELHGHKGD--VL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCL-NVFD--HHNYVTCVQFNPI- 360 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~--V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~-~~~~--h~~~V~~l~f~p~- 360 (667)
+..+.+-..+ .+ -+.|+.+. ++|-- ....+.|+++ ++..- .-+. ....|....|+|.
T Consensus 121 -------------v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 121 -------------VFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred -------------EeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 2223322222 33 56777766 33322 3346899997 33222 1121 2356788888884
Q ss_pred CCCEEEE-----EecCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEec-----------CCcEEEEEecCC
Q 005956 361 DDNYFIS-----GSIDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSI-----------TGTCHFYKASGN 423 (667)
Q Consensus 361 d~~~l~s-----gs~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~-----------dg~i~l~d~~~~ 423 (667)
+...|+. .+..+.+++|.+..+.++.... .+..-..+.|++.|+++++-.. ..+++|+++...
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 3334443 3467889999998776654322 2222346789999988776321 246788888755
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
...... ...++|..++|.|.+..+.++. -.+..+.++|++..+. +.. ..+.-..+.|+|.++|++.++
T Consensus 266 ~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~-~~~--Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 266 SIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR-FYF--PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccceec--------cccccceeeeecccCCceeEEecccccceeecccccceE-Eec--CCcccccccccCcccEEEEec
Confidence 554331 1137899999999875554444 5678899999875532 333 344556788999999999987
Q ss_pred CC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956 503 DD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 503 ~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
-| |.|-|||..+.......-.....+.+.|+|||+++-++.....
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 65 6899999988765554445566677799999999988765443
No 259
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-08 Score=98.44 Aligned_cols=249 Identities=20% Similarity=0.350 Sum_probs=162.8
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
....|+++.|...|.|||||...|.|.+|.-.... .| +.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~c---------------------------------------eyk 64 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GC---------------------------------------EYK 64 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-cc---------------------------------------chh
Confidence 45679999999999999999999999999765421 00 112
Q ss_pred cceeeeccc------------cceEEEEecCCC---eEEEEeCCCcEEEEecCCCe------------------------
Q 005956 301 PLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ------------------------ 341 (667)
Q Consensus 301 ~~~~l~gh~------------~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~------------------------ 341 (667)
...+|++|. ..|..+.|..++ .++..+.|++|++|.+....
T Consensus 65 f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~ 144 (460)
T COG5170 65 FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST 144 (460)
T ss_pred hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCH
Confidence 223333332 458888887654 78888999999999864220
Q ss_pred -------------Ee-----EEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEEeccc-----CC
Q 005956 342 -------------CL-----NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVDWADV-----RD 392 (667)
Q Consensus 342 -------------~~-----~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~~~~~-----~~ 392 (667)
.+ +.+ .|...|.++.|+. |...++++ .|=.|.+|++.-- .++.+.++ ..
T Consensus 145 ~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLte 222 (460)
T COG5170 145 KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTE 222 (460)
T ss_pred HHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHH
Confidence 00 111 2666788899987 66677665 5778999987642 23444443 34
Q ss_pred ceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcce-----eeeEeeccc----cCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 393 VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLK-----LEKVDFHDR----KKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 393 ~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~-----~~~~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.|++..|+|. .+.+...+..|.|++-|++...+. .......+. .......|..+.|+++| +++++-+ -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-y 300 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-Y 300 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-c
Confidence 5899999994 467777889999999999843322 111111110 11123568899999996 5555544 4
Q ss_pred CcEEEEECC---cceeeEEeCC----------CCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 463 SKLRILDGV---DVIHKFKGLP----------KSGSQ---MSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 463 g~I~iwd~~---~~~~~~~~~~----------~~~~v---~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.+|+|||.+ .++.+...+. ....| ..+.||-|.+++.+|+..+..-||-..
T Consensus 301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 689999976 3333332210 11122 357889999999999998888888643
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=5.1e-08 Score=94.40 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=135.8
Q ss_pred ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE--Eee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEE
Q 005956 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN--VFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVV 385 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~--~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~ 385 (667)
...++.|++.+ .++++-.+|.+.+-+.......+ ..+ |..+++...|+..+.+++++|+.|+.+..||++- ++.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678888888 88899899999866665554444 343 8899999999988889999999999999999993 3322
Q ss_pred --EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 386 --DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 386 --~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
....|...|.++.-+| .+.+|++|+.|..|++||.++...+.. .....+.|..+.++|.....++.+..-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------~~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------KAKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------cCccccceEEEEecchhhhHHHHHHHh
Confidence 2445777788888777 678999999999999999996655443 112247899999999754344555544
Q ss_pred CcEEEEECCcceeeE-----EeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEEcCCC
Q 005956 463 SKLRILDGVDVIHKF-----KGLPKSGSQMSASFTTTGKHIISIG-DDCRVY-VWNYDEL 515 (667)
Q Consensus 463 g~I~iwd~~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~-iWd~~~~ 515 (667)
+-.+|.+..+....+ ....|.+-+....|.....+|||++ .|+.++ +|-.-++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 556666654322111 1112444455555544445688865 466644 7755444
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=5.4e-07 Score=107.77 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=136.1
Q ss_pred ceEEEEecCCC-eEEEE-eCCCcEEEEecCCCeEeEEeeC-----------------CCcEEEEEEeeCCCCEEEEEecC
Q 005956 311 DVLDLAWSNSN-YLLSC-SMDKTVRMWQVGCNQCLNVFDH-----------------HNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~~~~~~~~~~h-----------------~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
....+++.+++ .|+.+ ...+.|+++|..++........ -...+.++|+|.++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45778888876 55444 4567899999887654332110 12346899999556677777788
Q ss_pred CeEEEEecCCCeEEEeccc---------------CCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeE-----
Q 005956 372 GKVRIWGVCEKRVVDWADV---------------RDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKV----- 430 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~---------------~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~----- 430 (667)
+.|++||..++.+..+... -.....++++|+|+.|+ +-+.++.|++||+.++......-
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765432211 12356799999998555 45567899999998654321100
Q ss_pred -----eeccc----cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCC------------CCCCeEE
Q 005956 431 -----DFHDR----KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLP------------KSGSQMS 488 (667)
Q Consensus 431 -----~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~------------~~~~v~~ 488 (667)
.+... .........+++++++| .++++-..++.|++||..... ..+.+.+ .......
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00000 00011234688999986 677788889999999976432 2222211 1225678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 489 ASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 489 v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
++++++|+.+++-+.++.|++||+.++..
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999888888899999999988754
No 262
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=1.6e-07 Score=89.89 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=132.6
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe--EE--EecccCCceEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR--VV--DWADVRDVISA 396 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~--~~--~~~~~~~~v~~ 396 (667)
.+..++.|.++++.+++.+....... ..-.+..+++++ +++++++.+....|..|.+.... .+ ......+.-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 57888999999999987554332222 112378899999 99999999999999999987643 22 23344455567
Q ss_pred EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCccee
Q 005956 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIH 475 (667)
Q Consensus 397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~-~~l~~~s~dg~I~iwd~~~~~~ 475 (667)
..|+.....+|+++.||++.|||++....+..... ..+..|.+.+..+.|++.|. .+|+.+-.-+.+.+.|+++...
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 88999999999999999999999997765543222 12344789999999998654 3566666678999999885432
Q ss_pred e--EEeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 476 K--FKGL------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 476 ~--~~~~------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
. +... .....|....|+.++.-+.+.+++ .++=|++...
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 2 1111 123447778888887777776654 3555665543
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=2.4e-06 Score=85.70 Aligned_cols=236 Identities=12% Similarity=0.168 Sum_probs=157.3
Q ss_pred eccccceEEEEecCCC-eEEEEeC---CCcEEEEecCC--CeEeEEe--e-CCCcEEEEEEeeCCCCEEEEEec-CCeEE
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSM---DKTVRMWQVGC--NQCLNVF--D-HHNYVTCVQFNPIDDNYFISGSI-DGKVR 375 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~---Dg~I~iWd~~~--~~~~~~~--~-h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~ 375 (667)
-.+...++-|+|+|++ +|.++-. +|.|--|.++. |+....- . ...+...+++++ ++++++++.. -|.|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEE
Confidence 3566778899999998 7777654 47788888775 4433222 1 333448899999 8988888875 47899
Q ss_pred EEecCC-CeE---EEecccCCc----------eEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcC
Q 005956 376 IWGVCE-KRV---VDWADVRDV----------ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTS 439 (667)
Q Consensus 376 iwdl~~-~~~---~~~~~~~~~----------v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~ 439 (667)
++-++. |.+ +....|.+. +....+.|++++|++... .-.|.+|++..+.+... ...+ ..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~ 189 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KP 189 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CC
Confidence 998865 432 233344443 888999999999988653 34899999997776544 2222 22
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE----------eCCCCCCeEEEEEcCCCCEEEEEeC-CCcEE
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK----------GLPKSGSQMSASFTTTGKHIISIGD-DCRVY 508 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~----------~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~ 508 (667)
+..-..|.|+|++....+++--+++|-+|........+. ..........+.+++||+||+++.. ...|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 456788999999854555566789999998654222221 1223456678889999999998753 24788
Q ss_pred EEEcCCCC--ccccc---cccCccceeEEccCCcEEEEecCCCC
Q 005956 509 VWNYDELC--FPSSK---QKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 509 iWd~~~~~--~~~~~---~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
+|.+.... ..... ..........|++.|.+|+++--...
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 88876542 22211 11222334589999999888755443
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=6.9e-09 Score=120.55 Aligned_cols=191 Identities=18% Similarity=0.298 Sum_probs=152.8
Q ss_pred eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
+..|-..|.++.-+|.. +.+||+.||.|++|....++.+..+. ....|+.+.|+. .|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 34455678888888887 99999999999999999998888875 447899999999 899999999999999999987
Q ss_pred CeEEEecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 382 KRVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
.....+..|....+.+.|-. ..+++++ .++++.+||..-...... + + ..|.+.++++++.|. .+.+++
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v--~---~~H~~gaT~l~~~P~-~qllis 2353 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL-V--H---TCHDGGATVLAYAPK-HQLLIS 2353 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce-e--e---eecCCCceEEEEcCc-ceEEEe
Confidence 66777888888888888876 5566654 468999999764332211 1 1 456688999999998 589999
Q ss_pred EeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 459 TSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 459 ~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
|+.+|.|++||++. ..+.++. +. ...++++|+..|.|+||++.....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccch
Confidence 99999999999874 3333332 33 567999999999999999988654
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.5e-07 Score=95.58 Aligned_cols=282 Identities=16% Similarity=0.246 Sum_probs=164.8
Q ss_pred cccccEEEEEEcCCCCEEEEEEC-----------CCcEEEEEcCCCceeeeeeCCCCCccc-----cCCCCeEEecccCC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGE-----------DGVVRIWHVTSVAASCKSFTDDGGFGS-----NAKEGKIKFGKKKS 283 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~-----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 283 (667)
.|.+ |.-+.|||+.+||+|-+. -..++|||+.++..........+.... -..+++ .+.....
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~ 325 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG 325 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc
Confidence 3665 888999999999999763 257999999987554332222221110 001111 0111111
Q ss_pred CCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC-----CCcEEEEecCCCeEeEEee-CCCcEEEEE
Q 005956 284 SHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM-----DKTVRMWQVGCNQCLNVFD-HHNYVTCVQ 356 (667)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-----Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 356 (667)
+...+.-.+...-++.+.+ ....|....|+|.+ .||--.. -..+.|-.+.+++.+++.. +.-.=..+.
T Consensus 326 ~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 326 NSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred ceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 2222221111111111211 23568888999987 5543221 1356677777777766654 222223456
Q ss_pred EeeCCCCEEEEEec----------CCeEEEEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecC
Q 005956 357 FNPIDDNYFISGSI----------DGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASG 422 (667)
Q Consensus 357 f~p~d~~~l~sgs~----------Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~ 422 (667)
|.. +|.+|+.--. -..+-|+.++... .+.....+..|..++|-|.|+.+++-+. ..++.+|-+.+
T Consensus 401 WQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 401 WQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred ecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 666 7777765321 1235666666655 3456677888999999999998887543 35889999885
Q ss_pred CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEE
Q 005956 423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHII 499 (667)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~---s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 499 (667)
.......+..-. ....+.+.|+|.| ++++++ |..|.+.++|+.-.-.+..........+.+.|.|.|+|++
T Consensus 480 ~~~~~~lVk~~d-----k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 480 NIKKPSLVKELD-----KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred CCCchhhhhhhc-----ccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEE
Confidence 433332221111 1457889999997 555544 5678999999773112222222334567889999999999
Q ss_pred EEeC------CCcEEEEEcCCC
Q 005956 500 SIGD------DCRVYVWNYDEL 515 (667)
Q Consensus 500 sgs~------Dg~I~iWd~~~~ 515 (667)
+++. |.--+||++.+.
T Consensus 554 T~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EeeehhhhccccceEEEEeecH
Confidence 9874 444567777654
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=5e-07 Score=97.63 Aligned_cols=202 Identities=9% Similarity=0.040 Sum_probs=129.1
Q ss_pred CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE-EEEEecC---CeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY-FISGSID---GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~-l~sgs~D---g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~ 405 (667)
..|.+-|.+.......... ..+....|+| +++. ++..+.+ ..|+++|+.+++...+....+......|+|||+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 4555556654443333333 4778899999 8874 6554443 5699999999988777667777778899999988
Q ss_pred EEEEe-cC--CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCccee-eEEe
Q 005956 406 FIVGS-IT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIH-KFKG 479 (667)
Q Consensus 406 l~~gs-~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~~-~~~~ 479 (667)
++... .+ ..|.++|+.++.... +... ........|+|||..++++....+ .|++.|+..... .+..
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~--LT~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQ--ITNY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEE--cccC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 87643 33 467777876665322 1111 122345689999866666665555 567777653222 2221
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 480 LPKSGSQMSASFTTTGKHIISIGDD---------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 480 ~~~~~~v~~v~~spdg~~l~sgs~D---------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
. ... ...|+|||++|+..+.. ..|++.|++++......... ......|+|||+.++......
T Consensus 319 ~--g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 319 H--GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred C--CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccC
Confidence 1 111 24899999999877643 36888899888654433322 233468999999999876543
No 267
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=1.1e-06 Score=85.76 Aligned_cols=188 Identities=15% Similarity=0.199 Sum_probs=115.1
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCC-----CCEEEEEecCCeEEEE
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPID-----DNYFISGSIDGKVRIW 377 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d-----~~~l~sgs~Dg~v~iw 377 (667)
=..++||||+ .||.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999 8889999999999999864433 221 34567778887632 2357777788888888
Q ss_pred ecCCCe-----E---EEec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 378 GVCEKR-----V---VDWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 378 dl~~~~-----~---~~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
-+..+. . ..+. .....|+++.|+|..+.|++|+.... .++. .+.....+++-..
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-----------s~a~~~GLtaWRi 187 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-----------SKASSCGLTAWRI 187 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-----------ccccccCceEEEE
Confidence 763321 1 1122 23668999999999999988875422 0000 0011123344333
Q ss_pred ccCCCeEEEEEeCCCcE-------EEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 449 SRDESQRIMITSEDSKL-------RILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I-------~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
-.+.+.+..+.+.+..+ .+|.+.....-.........|..|..||||..||+...+|.|.+|++.....
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 33322333232222222 2232221111011122467899999999999999999999999999988654
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=6.2e-07 Score=96.87 Aligned_cols=192 Identities=12% Similarity=0.147 Sum_probs=126.1
Q ss_pred ceEEEEecCCC-e-EEEEeCC---CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecC--CeEEEEecCCC
Q 005956 311 DVLDLAWSNSN-Y-LLSCSMD---KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SID--GKVRIWGVCEK 382 (667)
Q Consensus 311 ~V~~l~~s~~~-~-l~s~s~D---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~D--g~v~iwdl~~~ 382 (667)
.+....|+|++ . ++..+.+ ..|.++|+.+++..........+....|+| |++.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 77889999999 4 5544433 568899999988777666666677889999 88766543 333 56888899888
Q ss_pred eEEEecccCCceEEEEEeeCCCEEEEEecC-C--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 383 RVVDWADVRDVISAICYIPDGKGFIVGSIT-G--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 383 ~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
+...+...........|+|||+.|+..+.. | .|.++|+.++.... +...+ .. ...|+|+|...+++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--lt~~g------~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ--VVFHG------KN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe--CccCC------Cc--CceECCCCCEEEEEE
Confidence 877766655544567899999988887643 3 56677776655422 21111 11 248999985555555
Q ss_pred eCC--------CcEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005956 460 SED--------SKLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELC 516 (667)
Q Consensus 460 s~d--------g~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~ 516 (667)
... ..|.+.|+... ...+.. ........|+|||+.|+....+ ..+.+.+++...
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 433 36788886533 222222 1233358899999988776543 246677776643
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=9.7e-09 Score=119.36 Aligned_cols=189 Identities=13% Similarity=0.237 Sum_probs=145.0
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
++.|-..|.+|.=+|...+-+||+.||.|++|....++.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------------------------------------- 2242 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------------------------------------- 2242 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe-----------------------------------------
Confidence 445667889999999999999999999999999875322
Q ss_pred cCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe---cC
Q 005956 298 EESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGS---ID 371 (667)
Q Consensus 298 ~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs---~D 371 (667)
+..+. +-...|+.+.|+.+| .+..+..||.+.+|.+. .++.... .|......+.|-. ..+++++ .+
T Consensus 2243 ----v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2243 ----VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDN 2314 (2439)
T ss_pred ----EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCC
Confidence 22222 223789999999988 99999999999999998 3333333 3888888888864 5666654 46
Q ss_pred CeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 372 GKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 372 g~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+.+.+||..- +.......|.+.+++++|-|.-+.|++|+.+|.+++||++..++... +.. +.
T Consensus 2315 ~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~--------------~~~--~~ 2378 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT--------------FQA--LD 2378 (2439)
T ss_pred CcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH--------------hhh--hh
Confidence 7899999643 33223378899999999999999999999999999999997665432 011 22
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcc
Q 005956 450 RDESQRIMITSEDSKLRILDGVDV 473 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~ 473 (667)
. ..++++++..|.|+||++...
T Consensus 2379 ~--~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2379 T--REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred h--hheeeccCcccceEEEEcccc
Confidence 2 368999999999999997643
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=7.3e-06 Score=85.29 Aligned_cols=219 Identities=10% Similarity=0.057 Sum_probs=132.5
Q ss_pred ecCCC-eEE-EEe---------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEe-c-CCeEE
Q 005956 317 WSNSN-YLL-SCS---------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGS-I-DGKVR 375 (667)
Q Consensus 317 ~s~~~-~l~-s~s---------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs-~-Dg~v~ 375 (667)
++||+ .|+ +.+ .+..|.+||+.+.+.+..+... .....++++| ++++++... . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 78998 444 444 5789999999999999888632 2344889999 999888766 3 68999
Q ss_pred EEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-eeeeEee-cccc-CcCCCCeEEEEEcc-C
Q 005956 376 IWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDF-HDRK-KTSGNKITGIQFSR-D 451 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-~~~~~~~-~~~~-~~~~~~I~~l~~sp-~ 451 (667)
+.|+.+++++......+...-+..+.+... +-+.||......+.+... ......+ .... .....+ .|.+ +
T Consensus 132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCC
Confidence 999999998875554443333332222222 223455544433332211 1111111 1100 000112 4566 5
Q ss_pred CCeEEEEEeCCCcEEEEECCc----ceeeEEeC--------CCCCCeEEEEEcCCCCEEEEEe----------CCCcEEE
Q 005956 452 ESQRIMITSEDSKLRILDGVD----VIHKFKGL--------PKSGSQMSASFTTTGKHIISIG----------DDCRVYV 509 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs----------~Dg~I~i 509 (667)
| .++.++.. |.|.+.|+.. ....+... -..+.+.-++++++++.++... ..+.|.+
T Consensus 206 g-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 206 G-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred C-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 4 66666666 9999999532 11111110 0122233499999999988853 1257999
Q ss_pred EEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956 510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+|..+.+.............+.|+|||+.+++..+
T Consensus 284 iD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 99999887666555556666799999994444333
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=7.2e-08 Score=102.99 Aligned_cols=246 Identities=15% Similarity=0.249 Sum_probs=168.1
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
..+.+.+.|+|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+...
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~------------------------------ 106 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC------------------------------ 106 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH------------------------------
Confidence 44678889999999999999999999999999999999999987653210
Q ss_pred eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~ 366 (667)
.-..-....+.|.+++|+.+| .+...-.||.|.|=.++.++....--...-...+.|++ |...++
T Consensus 107 -------------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~L 172 (1189)
T KOG2041|consen 107 -------------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQAL 172 (1189)
T ss_pred -------------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHH
Confidence 001111245678999999999 88899999999887776554322211222344788999 888888
Q ss_pred EEecCCeEEEEecCCCe--------EEE----ecccCCceEEEEEe--------eCCCEEEEEecCCcEEEEEecCCcce
Q 005956 367 SGSIDGKVRIWGVCEKR--------VVD----WADVRDVISAICYI--------PDGKGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~--------~~~----~~~~~~~v~~v~~s--------pdg~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
.+-..|.+.+||....- .+. +......|..++|. ||...++++..+|.+.+..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 88889999999976531 111 11222335555553 47788999999999988766544333
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---------CcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCC
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGK 496 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~ 496 (667)
.. +. .+..|..+.|+++| ..|++++.+ +.|.+|..- .....++. ....|++++|-..|-
T Consensus 253 vv-~d-------tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 253 VV-VD-------TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGL 321 (1189)
T ss_pred eE-Ee-------cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCce
Confidence 21 11 12678999999997 777777654 256666633 44455554 567788888866665
Q ss_pred EEEEEeCCCcEEE
Q 005956 497 HIISIGDDCRVYV 509 (667)
Q Consensus 497 ~l~sgs~Dg~I~i 509 (667)
.||.+- |+.|++
T Consensus 322 riA~Av-dsfiyf 333 (1189)
T KOG2041|consen 322 RIAIAV-DSFIYF 333 (1189)
T ss_pred EEEEEe-cceEEE
Confidence 555442 444444
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.85 E-value=7e-08 Score=93.47 Aligned_cols=198 Identities=15% Similarity=0.174 Sum_probs=135.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
-.++.|++.+.-++++-.+|.+.+-+..... -+.+++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------------------------le~vq~ 160 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------------------------LEKVQT 160 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------------------------eeeccc
Confidence 4578888888889998888888744333210 133567
Q ss_pred eeccccceEEEEecCCC--eEEEEeCCCcEEEEecC-CCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 305 LHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG-CNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~-~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
+++|.-+++-+.|+... .+++|+.|+.+..||++ .++.+..- .|...|.+|.-+|..+.++++|+.|-.|++||.
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeeh
Confidence 88999999999998655 88999999999999998 34444432 389999999999988999999999999999999
Q ss_pred CC-CeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 380 CE-KRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 380 ~~-~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
+. ++.+......+.|..++.+|.-. .++.++...-.+|.+...+... .++.+.. .+.|.+-...-.|... ..+++
T Consensus 241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s-~~~hdSl~YG~DWd~~-~~~lA 317 (339)
T KOG0280|consen 241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPS-DKIHDSLCYGGDWDSK-DSFLA 317 (339)
T ss_pred hcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc-hheeeec-cccccceeeccccccc-cceee
Confidence 94 67777677778999999999432 3344444555677777655544 1222221 2223344444444222 13566
Q ss_pred EEe-CCCcEE-EE
Q 005956 458 ITS-EDSKLR-IL 468 (667)
Q Consensus 458 ~~s-~dg~I~-iw 468 (667)
+++ .|+.|+ +|
T Consensus 318 TCsFYDk~~~~~W 330 (339)
T KOG0280|consen 318 TCSFYDKKIRQLW 330 (339)
T ss_pred eeeccccceeeee
Confidence 644 454433 44
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.2e-06 Score=89.77 Aligned_cols=295 Identities=11% Similarity=0.157 Sum_probs=180.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------ceeeeeeCCCCCccccCC------------CCeEEecccCC
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSV---------AASCKSFTDDGGFGSNAK------------EGKIKFGKKKS 283 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~---------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 283 (667)
=+-+.|||-|.||+|--.-| |.+|--.+. ....+.|+|...++.... ...+.+|+...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 35689999999999998877 889965432 223344455544333211 12333333322
Q ss_pred CCceeecCCCcccccCCcceeeec--cccceE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956 284 SHVPVVIPDEVFQIEESPLQELHG--HKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 358 (667)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~g--h~~~V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 358 (667)
+. ....|.. ....++ -..||.|+ ++|--.. .+|.||+...-.++-.-. .-..|....|+
T Consensus 292 G~---------------lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 292 GL---------------LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred cc---------------hhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccC
Confidence 22 2222222 112222 35788888 5554333 689999987644332222 44678889999
Q ss_pred eCCCCEEEEEecC-----CeEEEEecCCCeEEEecccCC-ceEEEEEeeCCCEEEEEe----------cCCcEEEEEecC
Q 005956 359 PIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGS----------ITGTCHFYKASG 422 (667)
Q Consensus 359 p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~~-~v~~v~~spdg~~l~~gs----------~dg~i~l~d~~~ 422 (667)
| .+++|+.=... ..+.+..+.+++.++...... .=..+.|..+|.+|++-. .-.++.|+.++.
T Consensus 356 P-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 356 P-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred C-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 9 77777754322 357777777777665443322 223456777888877632 223567888888
Q ss_pred CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--CcEEEEECCcceeeEEeC--CCCCCeEEEEEcCCCCEE
Q 005956 423 NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--SKLRILDGVDVIHKFKGL--PKSGSQMSASFTTTGKHI 498 (667)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~spdg~~l 498 (667)
...+...+.+. ..|..++|-|.|.++.+..+.+ .++.+|.......+.... -.....+.+.|+|.|+++
T Consensus 435 KdIpve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fv 507 (698)
T KOG2314|consen 435 KDIPVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFV 507 (698)
T ss_pred cCCCceeeecc-------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEE
Confidence 87777766654 5799999999987666665544 468888765322211110 023556789999999999
Q ss_pred EEE---eCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecC
Q 005956 499 ISI---GDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 499 ~sg---s~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+.+ |..|.+.++|..-.......+ .....+-+.|-|.|+++.++.+
T Consensus 508 vva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred EEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 876 457899999998543333322 2334455689999999888543
No 274
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=7.8e-09 Score=107.09 Aligned_cols=246 Identities=13% Similarity=0.195 Sum_probs=163.5
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+.||+..|..++--.+.+-+++++.|.+|++|.+....- ..+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------~~~-------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------EIG-------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------ccc--------------------
Confidence 356789999999998877888999999999999999874100 000
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeC-CCCEEEEE-
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPI-DDNYFISG- 368 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~-d~~~l~sg- 368 (667)
...+..+++.|+.+|.++.|-.+. .+++ .|+-|.+||.--+..+.... ..+.+..+..-|. +..+++.|
T Consensus 773 ---tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc 847 (1034)
T KOG4190|consen 773 ---TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC 847 (1034)
T ss_pred ---cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec
Confidence 123456778999999999998877 5544 47889999988777765432 2233333333332 33444444
Q ss_pred ecCCeEEEEecCCCeEEE------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+...+|+++|.+.+.... .......+.+++..+.|++++++-.+|.|.+.|.++++.... +. .....
T Consensus 848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs-wr------pmecd 920 (1034)
T KOG4190|consen 848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS-WR------PMECD 920 (1034)
T ss_pred cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-CC------cccch
Confidence 788999999999876432 233456689999999999999999999999999998875432 10 00111
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEE-EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRI-LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~i-wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
...++ .|.+ +.++.+..|..+.+ |...+.+..++..+...+..-+ -.-|.-|+++-....+.||.
T Consensus 921 llqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 921 LLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 12222 2332 57777888888888 8766665555543222221111 12356677777666777774
No 275
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1.4e-05 Score=80.30 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=145.2
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceee
Q 005956 227 TLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 305 (667)
Q Consensus 227 ~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (667)
++.|.+ ++.++++--..+.|..|+..+... ..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----------------------------------------------~~~ 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----------------------------------------------EVI 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE----------------------------------------------EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----------------------------------------------EEE
Confidence 467887 777777777788899998875321 111
Q ss_pred eccccceEEEEec-CCCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEecC-------
Q 005956 306 HGHKGDVLDLAWS-NSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSID------- 371 (667)
Q Consensus 306 ~gh~~~V~~l~~s-~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~D------- 371 (667)
.... ...+++. +++.|+.+..++ +.++|..+++...... .......+++.| ++++.++....
T Consensus 38 ~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 38 DLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID 113 (246)
T ss_dssp ESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG
T ss_pred ecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc
Confidence 1111 6667777 677777777654 5555999887655543 234678999999 88877776543
Q ss_pred -CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEE
Q 005956 372 -GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 372 -g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~ 448 (667)
|.|..++.. +++......-...+.++|+|+++.|++ -+..+.|..|++........ ...+.. .....+..-.+++
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~v 191 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAV 191 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEE
T ss_pred ccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceE
Confidence 568888887 666555555667899999999997764 56778899999975443121 111111 1111134788999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEE-cCCCCEEEEEe
Q 005956 449 SRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIG 502 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs 502 (667)
..+| ++.++....+.|.++|.. +....+.. ....+++++| .++.+.|+..+
T Consensus 192 D~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 192 DSDG-NLWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp BTTS--EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCC-CEEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEEe
Confidence 9986 677777788999999977 34444544 3458999999 57766666544
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.8e-07 Score=95.59 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=141.7
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEe------e-------------CCCCEEEEEecCCeEEEEe
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFN------P-------------IDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~------p-------------~d~~~l~sgs~Dg~v~iwd 378 (667)
++|....||.+++|+..+++....|. ..+..++..|. | .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 89999999999999999999888774 33344455553 1 1455788889999999999
Q ss_pred cCCCeEEE---ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 379 VCEKRVVD---WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 379 l~~~~~~~---~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
+..+++.. ...|.+.|+++.++.+-..|.+++.|+.+..|+......... .+.....+.+++.+||| ..
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~-------~~~~~~~~~sl~is~D~-~~ 158 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI-------WKEQKPLVSSLCISPDG-KI 158 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-------eccCCCccceEEEcCCC-CE
Confidence 99999875 345888999999999989999999999999999987665443 11223568899999996 77
Q ss_pred EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCC-----CCEEEEE-eCCCcEEEEEcCC
Q 005956 456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTT-----GKHIISI-GDDCRVYVWNYDE 514 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~sg-s~Dg~I~iWd~~~ 514 (667)
+++++ ++|++||+.+........+|.++|.+++|..+ |+|+.++ ..+..|.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 77776 47999998865444444449999999999777 6776654 4566788887765
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=8.6e-07 Score=91.02 Aligned_cols=214 Identities=11% Similarity=0.130 Sum_probs=155.0
Q ss_pred CCCeEEEEeCCCcEEEEecCCCeEeEEe-e-----------CCCcEEEE-EEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVF-D-----------HHNYVTCV-QFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~-----------h~~~V~~l-~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
.||.-+.-+.-|.|.+||..+....+.- . ...+..-+ .|++.+|++++..| .|+..|.+...+-.+
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i 354 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI 354 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence 4563333445577999998876543321 1 01111122 25666789988887 478888888777776
Q ss_pred EecccCCceEEEEEeeCCCEEEEEecCC-cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956 386 DWADVRDVISAICYIPDGKGFIVGSITG-TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464 (667)
Q Consensus 386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg-~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~ 464 (667)
+. ++...|.-..+.-+++.++.|..|| .+-+||..+.+.... ...-+.|.++..+|+| ++++++.....
T Consensus 355 qv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------e~~lg~I~av~vs~dG-K~~vvaNdr~e 424 (668)
T COG4946 355 QV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------EKDLGNIEAVKVSPDG-KKVVVANDRFE 424 (668)
T ss_pred Ec-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe--------eCCccceEEEEEcCCC-cEEEEEcCceE
Confidence 64 4455588888888889999999999 899999998775432 1123789999999996 78899998899
Q ss_pred EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCCccccccccCccceeEEccCCcEEE
Q 005956 465 LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 540 (667)
Q Consensus 465 I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg----~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~la 540 (667)
|.+.|+.+...+.......+-|+.++|||++++||-+--+| .|+++|+.+++.-.......-.-..+|-|||++|-
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 99999987666666655778899999999999999876555 69999999987644433333334468999999887
Q ss_pred Eec
Q 005956 541 VQW 543 (667)
Q Consensus 541 v~w 543 (667)
.-.
T Consensus 505 fLs 507 (668)
T COG4946 505 FLS 507 (668)
T ss_pred EEe
Confidence 643
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=2.1e-06 Score=88.29 Aligned_cols=144 Identities=12% Similarity=0.180 Sum_probs=117.1
Q ss_pred cccccEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDG-VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg-~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------------------------------------------- 392 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------------------------------------------- 392 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------------------------
Confidence 6778888888888888888888888 7888887753
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC----
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG---- 372 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg---- 372 (667)
.+..+.+.-+.|.++..+++| .++.+-....|.+.|++++.....-+ ..+-|+.+.|+| +++.|+.+--+|
T Consensus 393 --e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq 469 (668)
T COG4946 393 --EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred --eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeee
Confidence 244555667889999999999 77788777889999999998755444 566899999999 999999877665
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs 410 (667)
.|+++|+.++++.........=.+-+|.|||++|..-+
T Consensus 470 ~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 58999999999988777766667788999999887654
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.78 E-value=1.4e-06 Score=90.51 Aligned_cols=266 Identities=16% Similarity=0.161 Sum_probs=170.5
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
-.-++..++|||.|.||++....| |.+|.-.....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~-------------------------------------------- 65 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK-------------------------------------------- 65 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence 456788999999999999988766 88997664221
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCC---------------CcEEEEecCCCeEeEEee-CCCc--EE-EEEEeeC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------------KTVRMWQVGCNQCLNVFD-HHNY--VT-CVQFNPI 360 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---------------g~I~iWd~~~~~~~~~~~-h~~~--V~-~l~f~p~ 360 (667)
+..+ -...|..+.|+|.+ +|.+-+.. ..+.+||+.++..+..+. ...+ .+ -+.|+-
T Consensus 66 -l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~- 141 (561)
T COG5354 66 -LVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI- 141 (561)
T ss_pred -eeee--ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-
Confidence 1111 12357777888877 66665433 249999999999999886 2222 45 678888
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEE--ecccC-CceEEEEEeeCC--CEEEE-----EecCCcEEEEEecCCcceeeeE
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVD--WADVR-DVISAICYIPDG--KGFIV-----GSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~-~~v~~v~~spdg--~~l~~-----gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
++++++-. ....++|+++ +..... ....+ ..|..+.|+|.| ..|+. +...+.+++|.+..+......-
T Consensus 142 ~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~ 219 (561)
T COG5354 142 DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN 219 (561)
T ss_pred cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee
Confidence 77776654 3457999997 444332 22222 568889999964 34444 4456789999988554433311
Q ss_pred eeccccCcCCCCeEEEEEccCCCeEEEEEe----------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 431 DFHDRKKTSGNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
-+. ..-..+.|.+.|..+++-.- ....++|+++...-..... ...++|...+|.|.++.+++
T Consensus 220 lfk-------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 220 LFK-------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred eEe-------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeE
Confidence 111 11245678887643333221 2356788887643222221 25789999999999887655
Q ss_pred E--eCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956 501 I--GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 501 g--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
. -.+..+.++|+.+.- . ............|+|.+.++.++--+..
T Consensus 292 i~g~~pa~~s~~~lr~Nl-~-~~~Pe~~rNT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 292 ISGYMPASVSVFDLRGNL-R-FYFPEQKRNTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred Eecccccceeecccccce-E-EecCCcccccccccCcccEEEEecCCcc
Confidence 4 478899999998762 2 2222333444579999998888654443
No 280
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=1.1e-07 Score=94.02 Aligned_cols=215 Identities=15% Similarity=0.215 Sum_probs=150.7
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe-cCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ-VGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd-~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
..+..++||.+.|++...-|.. -+++.+.|.++|||- .+.++.-..+. ...+++++.+.+ ....|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEE
Confidence 3467788999999988887765 899999999999994 45566555554 456889999998 888899999999998
Q ss_pred EEecCC----CeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC----------------------------
Q 005956 376 IWGVCE----KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG---------------------------- 422 (667)
Q Consensus 376 iwdl~~----~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~---------------------------- 422 (667)
-+.+.. ... ..+..|...+..+-|+-...++++.+.|..+.---.+.
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 886643 111 23455666666666665555655555543321110000
Q ss_pred -Cc-----ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCC
Q 005956 423 -ND-----LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 423 -~~-----~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
++ .......+..+.+.|.+.++++.|.|. ...++++..|..+.+||+. ..-..+....|...|..++.-+--
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence 00 000011122235567789999999997 4899999999999999975 333344445588888888887778
Q ss_pred CEEEEEeCCCcEEEEEcCCCC
Q 005956 496 KHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 496 ~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+.++++++||.|-+|+.+...
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeeeccCCCeEEEEecccee
Confidence 899999999999999998654
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=5.1e-08 Score=101.15 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=145.5
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------CeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
..-.++.+.||+..|..++--.+. -+++++.|++|++|.++. ..|..++. |+.+|..+.|.. +.+++++
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S- 801 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS- 801 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee-
Confidence 334567888999999988755444 899999999999998752 34666665 999999999998 7777765
Q ss_pred ecCCeEEEEecCCCeEEE---ecccCCceEEEEEee--CCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVD---WADVRDVISAICYIP--DGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~sp--dg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
.||-|.+||.--+++.. .....+.+..+..-+ +...++.| +...+++++|.+......+ +.... ....+..
T Consensus 802 -cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E-~kVcn-a~~Pna~ 878 (1034)
T KOG4190|consen 802 -CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE-LKVCN-APGPNAL 878 (1034)
T ss_pred -ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee-EEecc-CCCCchh
Confidence 47899999987766542 223333344443334 34445554 6788999999998877655 11111 1223466
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEcCCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV-WNYDELC 516 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i-Wd~~~~~ 516 (667)
+.+++..+.| +.++++-..|+|.+.|.++........+-......++ .|..+.|+....|..+.| |..-++.
T Consensus 879 ~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 879 TRAIAVADKG-NKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eeEEEeccCc-chhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 8899999986 8899999999999999886543322211222222222 366678888778888888 8776653
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=1.4e-07 Score=101.31 Aligned_cols=276 Identities=16% Similarity=0.238 Sum_probs=169.6
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC-------Cccc-cCCCCeEEecccCCCCceeecCCC
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG-------GFGS-NAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.+.+.++..+|.|+-+|.++.-| +.|-|+...-.....+.... ++.. .+.+.-+. ...+....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV--sts~qkai------ 94 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV--STSNQKAI------ 94 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE--ecCcchhh------
Confidence 46788999999999999998877 45556654211111111111 0000 00000000 00000000
Q ss_pred cccc----cCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-EeEEee-CCCcEEEEEEeeCCCCEE
Q 005956 294 VFQI----EESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 294 ~~~~----~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~d~~~l 365 (667)
+|.+ ....-..+.||...|+++.|+++. .|++++.|-.|..||+.+.. ++..+. -......++|+-.+++.+
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 1111 122234567999999999999988 89999999999999998753 444443 344567889998666666
Q ss_pred EEEecCCeEEEEecCCCeE--EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 366 ISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
++ +....|++||++.+.. .....+-..|+.++|.. ....+.+.+.||++++||........+ +..+...+
T Consensus 175 as-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~------~~vtt~~p 247 (1081)
T KOG0309|consen 175 AS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK------RTVTTNFP 247 (1081)
T ss_pred hh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc------eeccccCc
Confidence 55 5567899999987653 33555666777777766 234678889999999999875443322 11222356
Q ss_pred eEEEEEccCCCeEEEEE-eCCCcEEE------------EECCcceeeEEeCCCCCCeEEEEEcCCC----------CEEE
Q 005956 443 ITGIQFSRDESQRIMIT-SEDSKLRI------------LDGVDVIHKFKGLPKSGSQMSASFTTTG----------KHII 499 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~-s~dg~I~i------------wd~~~~~~~~~~~~~~~~v~~v~~spdg----------~~l~ 499 (667)
|..-.+.|-|..+++-- -.+..+.+ +|+.+.++.|.+ |...|...-|-..+ -.|+
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCCCccceeEE
Confidence 77777777543333222 22223333 234567778877 67777665553221 2599
Q ss_pred EEeCCCcEEEEEcCCC
Q 005956 500 SIGDDCRVYVWNYDEL 515 (667)
Q Consensus 500 sgs~Dg~I~iWd~~~~ 515 (667)
|-+.|..+++|-+.+.
T Consensus 326 TWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred EeecCCceEeeeccHH
Confidence 9999999999998764
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=1.2e-06 Score=94.88 Aligned_cols=258 Identities=14% Similarity=0.192 Sum_probs=171.2
Q ss_pred cccccceeeccccccEEEEEEcCC------------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEE
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPD------------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIK 277 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspd------------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (667)
..++..|.+.-|...|+.+.|.|- .-+||++...|.|.|||....
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~----------------------- 99 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA----------------------- 99 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-----------------------
Confidence 345677888899999999999872 126788888999999998852
Q ss_pred ecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCC---C--eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956 278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS---N--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY 351 (667)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~---~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~ 351 (667)
..+..+..|..+|.+++|-+. . .|++-..-.+|.+|+..+|+....+. ....
T Consensus 100 ----------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 100 ----------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred ----------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 234566778889999999752 2 67777777899999999999988876 4456
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCC-------CeEEEe-cccCC----------------c---------eEEEE
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------KRVVDW-ADVRD----------------V---------ISAIC 398 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------~~~~~~-~~~~~----------------~---------v~~v~ 398 (667)
..|+.+.|-|.+.|+.-+..|.+.+-+.-. ++..++ .+|.+ . ...++
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 678999998888888888888888876532 222221 11111 0 12356
Q ss_pred EeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC-eEEEEEeCCCcEEEEECCcceeeE
Q 005956 399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES-QRIMITSEDSKLRILDGVDVIHKF 477 (667)
Q Consensus 399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~-~~l~~~s~dg~I~iwd~~~~~~~~ 477 (667)
|+|.-+.++.......+.++|++-...... +.+.. +.+.-+.+-|++. ..|++...||.+.+|-.+.....+
T Consensus 238 f~p~~rn~lfi~~prellv~dle~~~~l~v-vpier------~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEYECCLAV-VPIER------GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchhhceeEE-EEecc------CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 788777777777888999999975544322 22221 4455566767643 478899999999999644322222
Q ss_pred EeC-----------------CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 478 KGL-----------------PKSGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 478 ~~~-----------------~~~~~v~~v~~spd-g~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
+.. .....+......|. ...++.--.+|.+.+|.+.++....
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred cccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 110 01111122222343 2334444457889999998765433
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=1e-05 Score=96.89 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=145.6
Q ss_pred EEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEeeC---------------CCcEEEEEEeeCCCCEEEEEe-cCCeE
Q 005956 313 LDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVFDH---------------HNYVTCVQFNPIDDNYFISGS-IDGKV 374 (667)
Q Consensus 313 ~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h---------------~~~V~~l~f~p~d~~~l~sgs-~Dg~v 374 (667)
..+++++. + .+++-+.++.|++||... ..+..+.. -.....+++.+ +++.|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 45777764 5 666777788999999864 44433321 12357899998 677655554 45779
Q ss_pred EEEecCCCeEEEeccc-----------------CCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeecc--
Q 005956 375 RIWGVCEKRVVDWADV-----------------RDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-- 434 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~-----------------~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-- 434 (667)
+.+|+.++.+..+... -.....++++| ++..+++.+.++.|++||..++.... +...+
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~--~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV--FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--EecCCcc
Confidence 9999988776543211 12356799999 56666667778899999987654321 11010
Q ss_pred -----c--cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee-EEe-C-------------------CCCCCe
Q 005956 435 -----R--KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FKG-L-------------------PKSGSQ 486 (667)
Q Consensus 435 -----~--~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~-~~~-~-------------------~~~~~v 486 (667)
. ..........++++|+|..++++-+.++.|++||+...... ..+ . ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 00112345679999997556677777899999997643211 110 0 001234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc--------------cCccceeEEccCCcEEEEecC
Q 005956 487 MSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK--------------NSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 487 ~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--------------~~~~~~~~fs~dg~~lav~w~ 544 (667)
..++++++|..+++-..++.|++||..++........ -.....++++++|.++++...
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 6889999999888888899999999987754322110 012345788999986666443
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.9e-06 Score=86.95 Aligned_cols=197 Identities=19% Similarity=0.302 Sum_probs=132.3
Q ss_pred cccccEEEEEEcCCCC--EEEE-----EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 220 AHKGCIWTLKFSPDGR--YLAS-----GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~--~Lat-----gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
-|...|+...+||.+. ++|+ +|.-+.|+||.+.......
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~---------------------------------- 208 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ---------------------------------- 208 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc----------------------------------
Confidence 3678899999998743 5554 3556788998876311100
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC--e--EEEEeCCC---------cEEEEecCCCeEeEEeeCCCcEEEEEEee
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--Y--LLSCSMDK---------TVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~--l~s~s~Dg---------~I~iWd~~~~~~~~~~~h~~~V~~l~f~p 359 (667)
....++| ....=..+.|++-| + |++...|+ ++++.++....+...+...++|+++.|+|
T Consensus 209 ------~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 209 ------PVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP 280 (566)
T ss_pred ------hhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC
Confidence 0001111 12223446777655 3 33333343 68888888667777777899999999999
Q ss_pred CCCCEEEE--EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeecc
Q 005956 360 IDDNYFIS--GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHD 434 (667)
Q Consensus 360 ~d~~~l~s--gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~ 434 (667)
++..|++ |-.=.++.|||++..-+..+. .++-+++-|+|.|++|+.++- .|.+.+||+.+.++... +.
T Consensus 281 -s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~-~~--- 353 (566)
T KOG2315|consen 281 -SGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK-FK--- 353 (566)
T ss_pred -CCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc-cc---
Confidence 7766554 445678999999877665543 455678899999999998764 48999999998655432 11
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEeC------CCcEEEEECC
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITSE------DSKLRILDGV 471 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~------dg~I~iwd~~ 471 (667)
...-+-+.|+||| .++++++. |+.++||+..
T Consensus 354 -----a~~tt~~eW~PdG-e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 -----AANTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred -----cCCceEEEEcCCC-cEEEEEeccccEEecCCeEEEEec
Confidence 1345778999997 66666543 7889999854
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=6.9e-05 Score=75.31 Aligned_cols=215 Identities=14% Similarity=0.112 Sum_probs=135.3
Q ss_pred EEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc--
Q 005956 314 DLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-- 389 (667)
Q Consensus 314 ~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-- 389 (667)
++.|.+ ++ ++++--..+.|..|+..+++... +.... ...+++...+ ..|+.+...+ +.++|+.++++..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567887 56 55566678899999998876644 33333 7777888415 5555555544 5666999987654332
Q ss_pred ----cCCceEEEEEeeCCCEEEEEecC--------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 390 ----VRDVISAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 390 ----~~~~v~~v~~spdg~~l~~gs~d--------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
....++.+++.|+|+..++.... |.+..++.. ++.... ... ....+.|+|+|++..+++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~-----~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG-----LGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE-----ESSEEEEEEETTSSEEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC-----cccccceEECCcchheee
Confidence 34568899999999966665433 345555555 232211 111 145789999999755666
Q ss_pred EEeCCCcEEEEECC--cc----eeeEEeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956 458 ITSEDSKLRILDGV--DV----IHKFKGLPK-SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC 529 (667)
Q Consensus 458 ~~s~dg~I~iwd~~--~~----~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~ 529 (667)
+-+..+.|..++.. .. ...+..... .+..-.+++..+|++.++.-..+.|.+++.+ ++...... .....++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 77888899999864 21 122322212 2347889999999988887788999999988 54433222 2235566
Q ss_pred eEEc-cCCcEEEEe
Q 005956 530 EHFF-SEGVSVAVQ 542 (667)
Q Consensus 530 ~~fs-~dg~~lav~ 542 (667)
++|. ++...|-+.
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 7884 565666553
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=8.7e-06 Score=78.21 Aligned_cols=191 Identities=13% Similarity=-0.017 Sum_probs=129.5
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE---EecccCCce
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV---DWADVRDVI 394 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~---~~~~~~~~v 394 (667)
+++|+.|+.-|...+|...+.+....+ .+...|+-+.=.-....-+..++.|.++++.++..+... .... -.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cce
Confidence 448999999999999999876544333 244433322111112234667788999998888664432 2222 238
Q ss_pred EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce
Q 005956 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI 474 (667)
Q Consensus 395 ~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~ 474 (667)
.++++++|++++++.+....|.+|.+.........+.... ....-.+..|+..+ ..++++..||.+.|||++...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~----t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP----TSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc----cCCCceeeeeccCc-ceEEEEecCCcEEEEEecccc
Confidence 8999999999999999999999999987655444322221 12344567788874 789999999999999987421
Q ss_pred e-----eEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCc
Q 005956 475 H-----KFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 475 ~-----~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
. .-+...|.+.+..+.|++.|. +|...-.-+.+.+-|+.++..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 1 112234889999999998764 344444457899999888753
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=2.4e-07 Score=91.64 Aligned_cols=151 Identities=15% Similarity=0.226 Sum_probs=116.6
Q ss_pred EEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
++.+.+..|-+-|+.++-...+. ....|.++.|...++.+..|+.+|.|..+|++....-.. +. .+..-|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~--a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WC--AQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cc--eEEEEcCcchhh
Confidence 55667788999999988665544 677889999999899999999999999999997622110 00 001123578899
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECC--cc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGV--DV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~--~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
++.-.-..++|++.+.+|+|.+||.+ ++ +..+.+|.+.....-+-+.+....|+++++|...+||.++.+.....
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88776334799999999999999977 33 77888876666666677788889999999999999999998876443
No 289
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.4e-07 Score=65.06 Aligned_cols=37 Identities=38% Similarity=0.869 Sum_probs=34.9
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWd 250 (667)
+.+++++|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578899999999999999999999999999999997
No 290
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.55 E-value=6.6e-05 Score=80.62 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=116.8
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEE------EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCC-
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD- 392 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~------l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~- 392 (667)
++.++.++.++.|..||..+++.+..+........ ... .+..++.+..++.+..+|+.+++.+.......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 45777788899999999999998877754332211 122 23467788889999999999987653221100
Q ss_pred ----c---eEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 393 ----V---ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 393 ----~---v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
. +..+.-+| .+..+++++.+|.+..||..+++..... .. ........ .+ ..+++++.+|
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~-~~--------~~~~~p~~--~~-~~vyv~~~~G 289 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR-DA--------SSYQGPAV--DD-NRLYVTDADG 289 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee-cc--------CCccCceE--eC-CEEEEECCCC
Confidence 0 00011111 3567888889999999999887654321 11 11122222 22 4778888999
Q ss_pred cEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956 464 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
.|+.+|..+.....+... ......+... .+.+|++++.+|.|+++|..+++.....
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 999999875544433211 1111222222 3678999999999999999998876543
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=9e-07 Score=89.53 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=117.9
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.++.+.++|.+++||.+..+....++++...... .+.+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-----------------------------------------~kl~~ 102 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-----------------------------------------AKLLD 102 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCc-----------------------------------------ceeee
Confidence 4556777889999999888888778777642110 01111
Q ss_pred ee--eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 304 EL--HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 304 ~l--~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
.+ ......+..+...... ....++....+.+|.+..+.+...++|-.-++.++|+| |+++|+++..|.+|++-...
T Consensus 103 ~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 103 VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred EeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecC
Confidence 11 1122334444444333 33345666778888888788888899999999999999 99999999999999998887
Q ss_pred CCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce
Q 005956 381 EKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 381 ~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
.--.+. ..+|..-|..++..++ +.|++|+.|+++++||+.+++..
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 766654 5678999999998765 56999999999999999988765
No 292
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=4.4e-05 Score=76.07 Aligned_cols=193 Identities=16% Similarity=0.132 Sum_probs=124.0
Q ss_pred CCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe-cccC----Cc
Q 005956 319 NSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVR----DV 393 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-~~~~----~~ 393 (667)
.++.+++++.++.|..||..+|+.+..+.....+...... .+..++.++.++.|+.+|..++++... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 4557888899999999999999998888644332222222 456677777888999999999987754 2211 12
Q ss_pred eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc----CCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT----SGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 394 v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~----~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
........++..++++..++.+..+|+.+++..... ........ ....+..-....++ .+++++.++.+.-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVD 189 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEE
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEE
Confidence 223334445889999999999999999988775442 12110000 00112232333343 777777777644449
Q ss_pred CCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 470 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
..+....+... ...+.. ....++..|+.++.++.|++||+.+++..+
T Consensus 190 ~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 88776555442 222222 245778888888899999999999987543
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-06 Score=89.62 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=169.7
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..... -
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------------------------------v 43 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------------------------------V 43 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------------------------------e
Confidence 378888877654 456999999999999997542110 1
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeC-CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC----CEEEEEecCCe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD----NYFISGSIDGK 373 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~----~~l~sgs~Dg~ 373 (667)
..+..+..|...|.+++.+-++ .+.|.+. |+.++++|+++-..+.-+........+.|....+ .+-++.-.++.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 2356677899999999999999 7778677 9999999998776654444322222233322122 22233345788
Q ss_pred EEEEecCCCe--E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccc-------cCcCCCC
Q 005956 374 VRIWGVCEKR--V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDR-------KKTSGNK 442 (667)
Q Consensus 374 v~iwdl~~~~--~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~-------~~~~~~~ 442 (667)
+.++|-.... . ....-|..+|.++.+.|-+..+++....|.|.-|.... .+.+...+.+..+ .......
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE 203 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence 9999976543 2 23445788999999999999999999999999999873 1111111111100 1122356
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeE---------------Ee----------------CCCCCCeEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKF---------------KG----------------LPKSGSQMSA 489 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~---------------~~----------------~~~~~~v~~v 489 (667)
.+++.|+|+| ..+.+-+.|..|++++... ..+.+ .. .......+.+
T Consensus 204 pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~ 282 (558)
T KOG0882|consen 204 PTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNA 282 (558)
T ss_pred ccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCccccee
Confidence 7899999996 7888888999999997532 11110 00 0123345678
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 490 SFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 490 ~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.|...|++|+-|+-=| |+|.++.++..
T Consensus 283 ~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 283 VFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred EEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 8999999999887655 78888877653
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=1.2e-05 Score=87.33 Aligned_cols=244 Identities=14% Similarity=0.164 Sum_probs=163.1
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.-.++.|+|.| +||-|+.. .|.|-|..+ -+.++
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s---------------------------------------------~q~iq 49 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRS---------------------------------------------LQLIQ 49 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhh---------------------------------------------hhhhh
Confidence 35678899887 67777654 577777664 34577
Q ss_pred eeeccccceEEEEecC----------C-C--eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC--CC-CEEE
Q 005956 304 ELHGHKGDVLDLAWSN----------S-N--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI--DD-NYFI 366 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~----------~-~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~--d~-~~l~ 366 (667)
.+.-|...|+.+.|.| . . .|+++...|.|.+||+..+..+..+. |.+++..++|-+. +. .+|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 7788999999999975 1 2 57778888999999999888877776 6678999999873 22 4566
Q ss_pred EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcc---eeeeEeeccc--c---
Q 005956 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDL---KLEKVDFHDR--K--- 436 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~---~~~~~~~~~~--~--- 436 (667)
.-....++.+|+..+|+..- ....+....|+.+.| |.+.+.+-+..|.+.+-+.-.... ..+.+.+... .
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH 209 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence 66677899999999988765 444455667799999 777888888888877766542211 1111111111 0
Q ss_pred --------CcC------CCC---eEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 437 --------KTS------GNK---ITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 437 --------~~~------~~~---I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
..+ ..- ...++|+|.- +.++.......+.|+|+. ..............+..+--.|....
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 000 000 1135678874 444555566789999976 34444444333444444444455568
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 005956 498 IISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 498 l~sgs~Dg~I~iWd~~~~ 515 (667)
|++.-.||.+.||-.+..
T Consensus 289 LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred EEEEecCCeEEEEEeecc
Confidence 999999999999987653
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=0.0003 Score=83.12 Aligned_cols=286 Identities=14% Similarity=0.217 Sum_probs=164.7
Q ss_pred ccccEEEEEEcCCCCEEEEEEC---C---CcEEEEEcCCC----------ceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGE---D---GVVRIWHVTSV----------AASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~---D---g~I~vWdv~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (667)
+.+.-..|+|-.||+|+|+.+. . +.||||+-+.. -..++.+.|.|.+++... ...+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q--------~~~~ 279 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQ--------RLPD 279 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEE--------EcCC
Confidence 4455668999999999999874 2 58999987621 112233344443332211 1111
Q ss_pred CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE--eEEe--eCCCcEEEEEEee
Q 005956 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC--LNVF--DHHNYVTCVQFNP 359 (667)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~--~~~~--~h~~~V~~l~f~p 359 (667)
...+.+.++---..+.....+......|..|.|++++ .|+..-.| .|.+|-..+..- .+.+ .....+..+.|+|
T Consensus 280 ~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 280 RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 1111111110000011111112345689999999999 66665555 499999987642 2222 2344566699999
Q ss_pred CCCCEEEEEecCCeEEEEec----CCC---------eE-------EE----------------ecccCCceEEEEEeeCC
Q 005956 360 IDDNYFISGSIDGKVRIWGV----CEK---------RV-------VD----------------WADVRDVISAICYIPDG 403 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl----~~~---------~~-------~~----------------~~~~~~~v~~v~~spdg 403 (667)
.+...|...+.+|.+..++. ..+ .+ +. .......|.+++|++++
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 88888888887777765543 111 11 11 11234669999999999
Q ss_pred CEEEEEecCCcEEEEEecCCccee-------eeEeec----cccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEE
Q 005956 404 KGFIVGSITGTCHFYKASGNDLKL-------EKVDFH----DRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILD 469 (667)
Q Consensus 404 ~~l~~gs~dg~i~l~d~~~~~~~~-------~~~~~~----~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd 469 (667)
..+++-..||.+.+|......... ..+... .........+..+.|..++ ..++....+ ..+.+++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecCcccceEEEEE
Confidence 889999999999999965433220 011110 0111234567888888875 555555443 5788887
Q ss_pred CCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 470 GVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 470 ~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.... ..........+.+..+...++...++.-..+|.|...+.....
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 518 IDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred eccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 6422 2222222234555555555555546666779999877766554
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.47 E-value=2.6e-06 Score=81.47 Aligned_cols=145 Identities=15% Similarity=0.204 Sum_probs=94.3
Q ss_pred CCCeEEEEeCCCcEEEEecCCCeEeE-Eee--CCCcEEEEEEeeCCCCEEEEEe-----cCCeEEEEecCCCeEE-Eecc
Q 005956 319 NSNYLLSCSMDKTVRMWQVGCNQCLN-VFD--HHNYVTCVQFNPIDDNYFISGS-----IDGKVRIWGVCEKRVV-DWAD 389 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~~~~~~~~-~~~--h~~~V~~l~f~p~d~~~l~sgs-----~Dg~v~iwdl~~~~~~-~~~~ 389 (667)
++..++++..||.+-+++.+.-..+. ... |.+. .+..... .++.+.++. .-+..++|+++..+.. ....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence 44589999999999999887521111 000 1111 1111111 233443332 1234667777654433 2222
Q ss_pred cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 390 VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 390 ~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
....|+++|-+|. .+.+++|+.+|.+-+||.+....+... .+.|..+|..+-|+|.++..|+++++||.+..|
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH------HHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 3344999999995 456778999999999999977544332 334558899999999988999999999999999
Q ss_pred ECC
Q 005956 469 DGV 471 (667)
Q Consensus 469 d~~ 471 (667)
|..
T Consensus 252 das 254 (319)
T KOG4714|consen 252 DAS 254 (319)
T ss_pred cCC
Confidence 965
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.47 E-value=6.5e-05 Score=80.66 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=108.6
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEeeCCC-----c------E-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----Y------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~------V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~ 388 (667)
+.++.+..++.+..+|..+++.+....... . + ....+ .+..++.++.++.++.||..+++.+...
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 567788888999999999998765543110 0 0 11112 3457888888999999999998876433
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
.... .... ..++..+++++.+|.+..+|..+++.......+.. ......... + ..+++++.+|.|+++
T Consensus 268 ~~~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~------~~~ssp~i~--g-~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 268 DASS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY------RQLTAPAVV--G-GYLVVGDFEGYLHWL 335 (377)
T ss_pred ccCC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC------CccccCEEE--C-CEEEEEeCCCEEEEE
Confidence 3221 1222 23567888889999999999988765433211111 112222222 2 488899999999999
Q ss_pred ECCcceeeEEeCCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 469 DGVDVIHKFKGLPKSGSQ-MSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 469 d~~~~~~~~~~~~~~~~v-~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
|..+.....+...+...+ .+..+. + ..|+.++.||.|+.+
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 987554444432233222 222332 3 458888899999876
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=7.2e-07 Score=86.97 Aligned_cols=235 Identities=14% Similarity=0.266 Sum_probs=140.0
Q ss_pred ccEEEEEEcCCCC--EEEEEECCCcEEEEEcCCCceeeeeeCC--CC-Ccccc---CCCCeEEecccCCCCceeecCCCc
Q 005956 223 GCIWTLKFSPDGR--YLASGGEDGVVRIWHVTSVAASCKSFTD--DG-GFGSN---AKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 223 ~~I~~v~fspdg~--~Latgs~Dg~I~vWdv~~~~~~~~~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
..|..+.|-.++. .++..+.|.+|++|.+.......+.-.. ++ ..... .....+.+.........+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii------ 159 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII------ 159 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE------
Confidence 3477777766543 5666678999999998754222111100 00 00000 001111111111111111
Q ss_pred ccccCCcceee-eccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEE--e-eC-----CCcEEEEEEeeCCCCE
Q 005956 295 FQIEESPLQEL-HGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNV--F-DH-----HNYVTCVQFNPIDDNY 364 (667)
Q Consensus 295 ~~~~~~~~~~l-~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~--~-~h-----~~~V~~l~f~p~d~~~ 364 (667)
...|.+.+ ..|.-.|.++.|+.|...+.++.|-.|.+|+++-.. +... + .| ..-|++..|+|...+.
T Consensus 160 ---aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 160 ---AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred ---EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 12233333 578889999999998855555667889999986432 2221 1 22 2358899999988888
Q ss_pred EEEEecCCeEEEEecCCCeEEE-----------------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956 365 FISGSIDGKVRIWGVCEKRVVD-----------------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~-----------------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~ 427 (667)
|...+..|.|++-|++...+.. +......|..+.|+++|+++++-.. -++++||.+..+.+.
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 8888999999999998543221 1122345888999999999887554 489999999887777
Q ss_pred eeEeeccccCc------CCCCe---EEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 428 EKVDFHDRKKT------SGNKI---TGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 428 ~~~~~~~~~~~------~~~~I---~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
..+.++..... ....| ..+.|+.|+ ..+++|+..+..-||
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiy 364 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIY 364 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeee
Confidence 66654432111 11222 246677764 677777766555444
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.5e-07 Score=102.81 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=152.2
Q ss_pred ccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCC
Q 005956 205 KCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSS 284 (667)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (667)
...-|+++...++++.|+..-+|++|+-+.++|+.|+..|.|+++++.++
T Consensus 1084 r~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG------------------------------ 1133 (1516)
T KOG1832|consen 1084 RQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG------------------------------ 1133 (1516)
T ss_pred chhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc------------------------------
Confidence 34556788888899999999999999999999999999999999999873
Q ss_pred CceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCC-cEEEEecCC-CeEeEEeeCCCcEEEEEEeeC
Q 005956 285 HVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDK-TVRMWQVGC-NQCLNVFDHHNYVTCVQFNPI 360 (667)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg-~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~ 360 (667)
.......+|...|+-+.-+.+| .++ +++... -..+|++.. +.....|. .-.++.|+.
T Consensus 1134 ---------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn- 1194 (1516)
T KOG1832|consen 1134 ---------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSN- 1194 (1516)
T ss_pred ---------------cccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhh-
Confidence 3345567899999999999898 444 444433 577999864 33344442 345778887
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEEe-----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~-----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
....-+.|.......+||+.++..... ......-++..|+|+.+.++ .|| .+||++........-.+
T Consensus 1195 ~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f--- 1266 (1516)
T KOG1832|consen 1195 SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF--- 1266 (1516)
T ss_pred hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhh---
Confidence 444445566667799999999875431 12223347788999887776 344 58999876432211111
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
..-..=.|+|.| ..+++-+ .|||+++....-.. ..-....+.|+..|..++..
T Consensus 1267 -----t~~~~G~FHP~g-~eVIINS-----EIwD~RTF~lLh~V--P~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1267 -----TDYGGGGFHPSG-NEVIINS-----EIWDMRTFKLLHSV--PSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -----eecccccccCCC-ceEEeec-----hhhhhHHHHHHhcC--ccccceEEEeccCccchhhh
Confidence 111123589997 5566655 38998754322111 22334677888888766544
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.41 E-value=0.00022 Score=75.75 Aligned_cols=234 Identities=13% Similarity=0.134 Sum_probs=132.7
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-C-----------------CCcEEEEEEeeCCCCEEEEEec
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-H-----------------HNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-----------------~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
...+....|+|+|..++--.++.|.+++..++...+... . -..-..+-|+| |+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence 567888999999933333456789999988775544321 1 11224678999 8888876543
Q ss_pred CC------------------------------------eEEEEecCCCeEEEe------cccCCceEEEEEeeCCCEEEE
Q 005956 371 DG------------------------------------KVRIWGVCEKRVVDW------ADVRDVISAICYIPDGKGFIV 408 (667)
Q Consensus 371 Dg------------------------------------~v~iwdl~~~~~~~~------~~~~~~v~~v~~spdg~~l~~ 408 (667)
|. .+.++|+.+++...+ ......+..+.|.++++.|++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 31 234456655554221 123445888999999985555
Q ss_pred EecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc-cCCCeEEEEEeCCCc--EEEEECCcceeeEEeC
Q 005956 409 GSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS-RDESQRIMITSEDSK--LRILDGVDVIHKFKGL 480 (667)
Q Consensus 409 gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s-p~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~ 480 (667)
.-.+ ..+.++|..++......... ...--.....+.|. +++..+|.....+|- |++++......+ ...
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccc
Confidence 4332 24667787765554332111 11111223355665 777788888888885 445565543322 222
Q ss_pred CCCCCeE-EEEEcCCCCEEE-EEeCC----CcEEEEEcC-CCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956 481 PKSGSQM-SASFTTTGKHII-SIGDD----CRVYVWNYD-ELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 481 ~~~~~v~-~v~~spdg~~l~-sgs~D----g~I~iWd~~-~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
...-.|. -+.++++++.|+ ++..+ ..|+.-+++ ++................|+|+|.+++..+++..
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPD 350 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSS
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCC
Confidence 2344454 467788887665 44432 356666777 5444333332222246799999999999876643
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.40 E-value=2.9e-06 Score=81.08 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=60.9
Q ss_pred ceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 311 ~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.|.+++-+|.. .++.|+.||.+.+||.+.......+ .|+.+|+.+.|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48889988855 8889999999999999877443332 39999999999999999999999999999999765
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=8e-07 Score=95.62 Aligned_cols=212 Identities=18% Similarity=0.309 Sum_probs=144.0
Q ss_pred eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
..+.+|..+|+.|.|+|... .|||++.|-.+..||+.+.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------------------------------------- 147 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------------------------------------- 147 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------------------------
Confidence 35779999999999998654 8999999999999999862
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
..++..+..-......++|+-.. .+++.+..+.|++||...+. ++..++ |...|..+.|+..-...+.+.+.|
T Consensus 148 ----~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d 223 (1081)
T KOG0309|consen 148 ----HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSND 223 (1081)
T ss_pred ----CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCC
Confidence 23444444444556778888644 67777777889999998764 445554 888899999987566778999999
Q ss_pred CeEEEEecCCCe--EEEecccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEee---ccccCcCCCCeE
Q 005956 372 GKVRIWGVCEKR--VVDWADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDF---HDRKKTSGNKIT 444 (667)
Q Consensus 372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~---~~~~~~~~~~I~ 444 (667)
++|++||..... .........+|.--+|.|-|....+--. +..+.+++.++.......... ......|...|.
T Consensus 224 ~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 224 GTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred CceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH
Confidence 999999986543 2334455666777788886655444222 224555555443332111111 111334456666
Q ss_pred EEEEccCC---------CeEEEEEeCCCcEEEEECC
Q 005956 445 GIQFSRDE---------SQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 445 ~l~~sp~g---------~~~l~~~s~dg~I~iwd~~ 471 (667)
.+.|-..+ ...|++=+.|..+++|-+.
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 66663321 1468999999999999654
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.7e-06 Score=86.02 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=147.5
Q ss_pred ccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe---EeEEe-eCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCC
Q 005956 307 GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCE 381 (667)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~---~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~ 381 (667)
-|.+.|+.+.-....++++++.||.++.|.-..-. .+..+ .|...|..++.+- ++.++.+.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 47888888887777799999999999999765422 22333 3777888888888 8999999777 99999999987
Q ss_pred CeEEEecccCCceEEEEEee-CC---CEEEE-EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 382 KRVVDWADVRDVISAICYIP-DG---KGFIV-GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~sp-dg---~~l~~-gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
-..+...........++|.. .| ..+++ .-.+|.+.++|-.....+.. ...+.|..+|..+.+.+.+ ..+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-----~fkklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-----YFKKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc-----eecccccCceEEEEeeccc-cce
Confidence 66554333333333344433 22 13444 34678999999876554322 1134466899999999985 678
Q ss_pred EEEeCCCcEEEEECCccee---------------eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 457 MITSEDSKLRILDGVDVIH---------------KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~---------------~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
++....|.|..|......+ .+..........++.|+|+|..+.+-+.|..|+++++.+++....
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 8888899999998662111 111122455678999999999999999999999999999875443
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.32 E-value=9.3e-06 Score=82.36 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=104.3
Q ss_pred EEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC---eEEEEecCCCeE
Q 005956 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRV 384 (667)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~ 384 (667)
..+..++.+ +|+.+..++...++++... +++..+.....-+++.|.. +......+..-| .+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence 344556667 6666666666666666433 3333443444445555555 444444444444 455555555777
Q ss_pred EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464 (667)
Q Consensus 385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~ 464 (667)
....+|-..++.++++||+++|+++..|+.|++-....... .+.+ ...|..-|..++..++ +.|++++.|++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-Iesf-----clGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-IESF-----CLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-hhhh-----ccccHhheeeeeeccC--ceeeecCCCCc
Confidence 88889999999999999999999999999999877653222 1211 2334578999999887 57999999999
Q ss_pred EEEEECCcc
Q 005956 465 LRILDGVDV 473 (667)
Q Consensus 465 I~iwd~~~~ 473 (667)
|++||..+.
T Consensus 217 lr~Wd~~sg 225 (390)
T KOG3914|consen 217 LRLWDITSG 225 (390)
T ss_pred EEEEecccC
Confidence 999998754
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.28 E-value=7.8e-05 Score=82.74 Aligned_cols=177 Identities=12% Similarity=0.152 Sum_probs=136.2
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCC-cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICY 399 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~ 399 (667)
.++-|+....+..+|+.+.+..+...-.. .|+-+.. +++++.+|...|+|.+-|.++.+.+. +..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence 67778887888899999988887776333 5666665 67899999999999999999988775 667888887665
Q ss_pred eeCCCEEEEEec---------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE-
Q 005956 400 IPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD- 469 (667)
Q Consensus 400 spdg~~l~~gs~---------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd- 469 (667)
-.|+.|++++. |.-+++||++..+...- +.++ ..-.-+.|+|.=...+++++..|...+-|
T Consensus 225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred -ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccc-------cCchhhhhcccccceEEEEecccceeeccc
Confidence 46788888765 44678999997655322 2222 11245678887667899999999999999
Q ss_pred --CCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 470 --GVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 470 --~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
+.+. ...+........+..+++|++|+.||.|..+|.|.+|.
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4333 44455555667799999999999999999999999998
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.25 E-value=0.0013 Score=66.51 Aligned_cols=230 Identities=12% Similarity=0.104 Sum_probs=142.7
Q ss_pred EEEEEcC-CCCEEEEEECCCc-EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 226 WTLKFSP-DGRYLASGGEDGV-VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 226 ~~v~fsp-dg~~Latgs~Dg~-I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
..++.+| .+..+|.+-.-|+ ..+||..++...... ...+-.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------------------------------~a~~gR 50 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------------------------------WAPPGR 50 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------------------------------cCCCCC
Confidence 4577788 5567777776664 567888765433211 123345
Q ss_pred eeeccccceEEEEecCCC-eEEEEe-----CCCcEEEEecC-CCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe------
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCS-----MDKTVRMWQVG-CNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------ 369 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s-----~Dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs------ 369 (667)
.|.|| -.|++|| +|++.= ..|.|-|||+. +.+.+..+. |.-....+.+.| |+..|+++.
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence 67787 4789999 666653 34789999998 566677775 555667788999 887777653
Q ss_pred ------------cCCeEEEEecCCCeEEEe-----cccCCceEEEEEeeCCCEEEEEecCC-------cEEEEEecCCcc
Q 005956 370 ------------IDGKVRIWGVCEKRVVDW-----ADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDL 425 (667)
Q Consensus 370 ------------~Dg~v~iwdl~~~~~~~~-----~~~~~~v~~v~~spdg~~l~~gs~dg-------~i~l~d~~~~~~ 425 (667)
.+..+.+.|..+++++.. ..++-.|..+++.++|..++..-..| .+-+++.... +
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~ 202 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-L 202 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-c
Confidence 234566677888887643 33666799999999986555433332 1222322211 1
Q ss_pred eeeeEeeccc-cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 426 KLEKVDFHDR-KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 426 ~~~~~~~~~~-~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
..+..... .....+.|-+|++++++....+++=..+.+.+||..+....-.. .-.-+..++-.+++ ++++.+.
T Consensus 203 --~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG~- 276 (305)
T PF07433_consen 203 --RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSGQ- 276 (305)
T ss_pred --eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCCC-
Confidence 11111110 11234779999999997555566667889999997754433222 33445666766666 6776654
Q ss_pred Cc
Q 005956 505 CR 506 (667)
Q Consensus 505 g~ 506 (667)
|.
T Consensus 277 G~ 278 (305)
T PF07433_consen 277 GQ 278 (305)
T ss_pred cc
Confidence 44
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.6e-05 Score=84.44 Aligned_cols=187 Identities=16% Similarity=0.232 Sum_probs=131.6
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.+.|.|++++ +++||-|+.+|.|++.+... .+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~----------------------------------------------~~ 70 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG----------------------------------------------NP 70 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC----------------------------------------------cc
Confidence 4678888887 67999999999999998763 12
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC----CCCEEEEEecCCeEEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRI 376 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~----d~~~l~sgs~Dg~v~i 376 (667)
.+...|... ..+| +++||+.||+|.|-.+.+.+....+....++..++++|. ..+.+++|+..| +.+
T Consensus 71 -~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL 142 (846)
T KOG2066|consen 71 -KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL 142 (846)
T ss_pred -ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEE
Confidence 222234333 3456 999999999999999999999988999999999999992 256799999888 777
Q ss_pred EecC---CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 377 WGVC---EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 377 wdl~---~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
+.-. ....+......+.|.+++|. |+++|-+..+| +++||+...+.... +............-..+.|.++.
T Consensus 143 ~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~-i~~p~~~~R~e~fpphl~W~~~~- 217 (846)
T KOG2066|consen 143 SERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN-IPPPSQSVRPELFPPHLHWQDED- 217 (846)
T ss_pred ehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec-cCCCCCCCCcccCCCceEecCCC-
Confidence 7532 22233455667889999995 67888887665 79999987665432 22111111122334567888763
Q ss_pred eEEEEEeCCCcEEEEECC
Q 005956 454 QRIMITSEDSKLRILDGV 471 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~ 471 (667)
.|+.| ...+|+|..++
T Consensus 218 -~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 -RLVIG-WGDSVKICSIK 233 (846)
T ss_pred -eEEEe-cCCeEEEEEEe
Confidence 55554 33467777655
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.23 E-value=0.00042 Score=67.94 Aligned_cols=199 Identities=13% Similarity=0.155 Sum_probs=105.4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
=..++||||+.+||.+...|+|+|+|+.......+... ..
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~----------------------------------------~~ 85 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPA----------------------------------------MS 85 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcc----------------------------------------cc
Confidence 35699999999999999999999999985322111100 00
Q ss_pred ee-ccccceEEEEecCC------C-eEEEEeCCCcEEEEecCC-----CeEeEEee----CCCcEEEEEEeeCCCCEEEE
Q 005956 305 LH-GHKGDVLDLAWSNS------N-YLLSCSMDKTVRMWQVGC-----NQCLNVFD----HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 305 l~-gh~~~V~~l~~s~~------~-~l~s~s~Dg~I~iWd~~~-----~~~~~~~~----h~~~V~~l~f~p~d~~~l~s 367 (667)
+. .-...|..+.|.+. . .|+.-..+|.++=|-+.. .+....|. +...|.++.++| ..++|+.
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlV 164 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLV 164 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEE
Confidence 00 11234455555321 1 577777888888776532 23344443 467899999999 7777777
Q ss_pred EecCCe-EEEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 368 GSIDGK-VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 368 gs~Dg~-v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
|+.... -..+.....-+..+.-..+......+...+..+. ..... .++.+-+.. +..........|..
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~---~~~~~~~~~-------~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR---GLLRIPSFK-------FFSRQGQEQDGIFK 234 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccc---ceeecccee-------eeeccccCCCceEE
Confidence 764322 0000000000111111111111110000000111 11111 122211111 11111222477999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCccee
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIH 475 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~ 475 (667)
|..+||| ..|++...+|.|.+|++..+..
T Consensus 235 mSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 235 MSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 9999996 8999999999999999875543
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.23 E-value=2.3e-06 Score=58.89 Aligned_cols=37 Identities=32% Similarity=0.704 Sum_probs=34.6
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 336 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd 336 (667)
+++.++.+|...|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3578899999999999999998 999999999999997
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.4e-05 Score=75.14 Aligned_cols=255 Identities=11% Similarity=0.081 Sum_probs=141.5
Q ss_pred cccccceeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
..+...+.+.+|...|..|+|||..+ +|..++-+.+|+|.|+.+.
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---------------------------------- 226 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---------------------------------- 226 (463)
T ss_pred CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc----------------------------------
Confidence 44555667889999999999999877 7889999999999999862
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-eEEee---CCCcEEEEEEeeC--
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-LNVFD---HHNYVTCVQFNPI-- 360 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-~~~~~---h~~~V~~l~f~p~-- 360 (667)
..+..+..| ..+++++|.-+. +++.|-..|.|.|||++..+- +..+. ...+|..++.-+.
T Consensus 227 -----------~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~ 294 (463)
T KOG1645|consen 227 -----------CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNK 294 (463)
T ss_pred -----------eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccc
Confidence 223445555 789999998766 888999999999999975432 22221 2334444433321
Q ss_pred ---CCCEEEEEecCCeEEEEecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecCC----cEEE----EEecCCcc
Q 005956 361 ---DDNYFISGSIDGKVRIWGVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSITG----TCHF----YKASGNDL 425 (667)
Q Consensus 361 ---d~~~l~sgs~Dg~v~iwdl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l----~d~~~~~~ 425 (667)
.+.+++..+.+ +..|.+.... .+.-....+...++.+.+-.+.+++..... .++. -|..++..
T Consensus 295 ~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p 372 (463)
T KOG1645|consen 295 IFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP 372 (463)
T ss_pred cccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCce
Confidence 23344443332 4556543321 222233455666677777556655544321 1111 11111111
Q ss_pred eeeeEeec-cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-C-CCEEEEEe
Q 005956 426 KLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-T-GKHIISIG 502 (667)
Q Consensus 426 ~~~~~~~~-~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-d-g~~l~sgs 502 (667)
....-... +.+......-..+.-.+++...+.++..-+++.+||........... -..+|..++... + +.||++-.
T Consensus 373 Vc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LT 451 (463)
T KOG1645|consen 373 VCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLT 451 (463)
T ss_pred eeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhhee
Confidence 11100000 11111001111122234432344455566789999987544333332 346777776532 2 35666665
Q ss_pred CCCcEEEEEcCC
Q 005956 503 DDCRVYVWNYDE 514 (667)
Q Consensus 503 ~Dg~I~iWd~~~ 514 (667)
|..++||..+.
T Consensus 452 -d~~v~Iyk~es 462 (463)
T KOG1645|consen 452 -DDRVHIYKNES 462 (463)
T ss_pred -cceEEEEecCC
Confidence 56788887653
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00061 Score=75.65 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=131.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.|+| |++.+..+|.|+.+|.|.+.+-. .+.++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s----------------------------------------------~~~~~ 58 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS----------------------------------------------FQLIR 58 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc----------------------------------------------ceeee
Confidence 5555 56888899999999988776543 12345
Q ss_pred eeeccccc-eEEEEecCCC-eEEEEeCCC-----cEEEEecCC------CeEe---EEee-----CCCcEEEEEEeeCCC
Q 005956 304 ELHGHKGD-VLDLAWSNSN-YLLSCSMDK-----TVRMWQVGC------NQCL---NVFD-----HHNYVTCVQFNPIDD 362 (667)
Q Consensus 304 ~l~gh~~~-V~~l~~s~~~-~l~s~s~Dg-----~I~iWd~~~------~~~~---~~~~-----h~~~V~~l~f~p~d~ 362 (667)
.++.+... |..+....+. +|++.+.|+ .|+||+++. ..|+ +.+. ...++.+++.+. +-
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l 137 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DL 137 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cc
Confidence 56666666 4444433333 788877775 499999853 2344 3333 345788999998 88
Q ss_pred CEEEEEecCCeEEEEec--CC---CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 363 NYFISGSIDGKVRIWGV--CE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl--~~---~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
+.+++|-.+|.|..+.- .. .+.......+.+|+.+++..+++.++.......|.+|.+.+.........
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld------ 211 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD------ 211 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec------
Confidence 99999999999999842 11 12333455678999999999998855555566899999985552221222
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEE
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFK 478 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~ 478 (667)
.++....|-.|++.- ..+++++ +..+.+||.......+.
T Consensus 212 ~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 212 NNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred cCCccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeee
Confidence 234788888888863 3244443 34689998764433333
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=2.4e-05 Score=85.75 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=124.7
Q ss_pred CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (667)
Q Consensus 348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~ 427 (667)
..+.++|++++ +..|+.|+.+|.|++++..... .....|... .-+|.++++++.||++.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44567788884 6899999999999999987654 333333322 5689999999999999998887765543
Q ss_pred eeEeeccccCcCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 428 EKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 428 ~~~~~~~~~~~~~~~I~~l~~sp~----g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
+..++ .++.+++++|+ ..+.+++|+.-| +.++.-+ ........+...++|.++.|. |.+||-+
T Consensus 108 -~~df~-------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 108 -QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred -eEecC-------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 22232 67999999998 346789999888 7776522 111122344578999999995 7899998
Q ss_pred eCCCcEEEEEcCCCCcccccc-------ccCccceeEEccCCcEEEEecCCCCcc
Q 005956 502 GDDCRVYVWNYDELCFPSSKQ-------KNSVRSCEHFFSEGVSVAVQWPGIGTE 549 (667)
Q Consensus 502 s~Dg~I~iWd~~~~~~~~~~~-------~~~~~~~~~fs~dg~~lav~w~~~~~~ 549 (667)
+++| |+|||+...+...... ...-...+.|.+ ...|+++|......
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i 229 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKI 229 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEE
Confidence 8777 8999998876533321 111122345555 67799999886544
No 313
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=3.7e-06 Score=89.65 Aligned_cols=230 Identities=14% Similarity=0.182 Sum_probs=142.8
Q ss_pred ccceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEe-EEe--eCCCcEEEEEEeeCCCCEEEEEe----cCCeEEEEe
Q 005956 309 KGDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL-NVF--DHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWG 378 (667)
Q Consensus 309 ~~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~-~~~--~h~~~V~~l~f~p~d~~~l~sgs----~Dg~v~iwd 378 (667)
...+.|+++.-+. .++.|..+|.|-+-.+....-. ..+ ++..+.++++|++.|.+.|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777765433 7888999999999887654332 222 47788999999997777787774 346799999
Q ss_pred cCCCeEE-----Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 379 VCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 379 l~~~~~~-----~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+.++-.+ .+. .......++||..+.+.+++|.....++++|++........+. ...+..+...|-.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--------TKYVQGITVDPFS 207 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--------hhhcccceecCCC
Confidence 9887221 111 2344567899998999999999999999999984332221111 1346667777733
Q ss_pred CeEEEEEeCCCcEEEEE-CCcceeeEEeCCC-----CCCeEEEEEcCCCC-EEEEEeC-CCcEEEEEcCCCCcccccccc
Q 005956 453 SQRIMITSEDSKLRILD-GVDVIHKFKGLPK-----SGSQMSASFTTTGK-HIISIGD-DCRVYVWNYDELCFPSSKQKN 524 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd-~~~~~~~~~~~~~-----~~~v~~v~~spdg~-~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~ 524 (667)
..++++.. ||.|.+|| ..+....+....+ ...+..++|.|... .+++... .++|+++++............
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 34555544 99999999 3332222221111 22488999988643 3444444 478999998655433333322
Q ss_pred CccceeE---EccCCc---EEEEecCCCC
Q 005956 525 SVRSCEH---FFSEGV---SVAVQWPGIG 547 (667)
Q Consensus 525 ~~~~~~~---fs~dg~---~lav~w~~~~ 547 (667)
....... |-|.++ +-..+|+..-
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ceeeecccccccccccccceeecCcCcCC
Confidence 2222222 555552 2223565544
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.6e-06 Score=94.97 Aligned_cols=221 Identities=15% Similarity=0.157 Sum_probs=149.9
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC--eEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG--KVR 375 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~ 375 (667)
++..+|+.|+...+|++|+.+. +|+.|+..|.|+++++.+|.....+. |..+|+-+.=+. ++..+++.+.-. ...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 4567788899999999999877 99999999999999999998887775 999999999888 777766655433 477
Q ss_pred EEecCC-CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 376 IWGVCE-KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 376 iwdl~~-~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
+|++.. +.... .-..-.++.|+..-+.-++|+......+||+.++......+.. ..+....-+...|+|.+ .
T Consensus 1171 LW~~~s~~~~~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~---~~~~~y~~n~a~FsP~D-~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD---TVTSSYSNNLAHFSPCD-T 1243 (1516)
T ss_pred HhccccccCccc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc---chhhhhhccccccCCCc-c
Confidence 898865 11221 1233467788877666777888889999999988765442211 11112333678899986 4
Q ss_pred EEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEE
Q 005956 455 RIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHF 532 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~f 532 (667)
+++- || .+||.+. .+++|... . --..-.|+|.|.-++.-+ -|||+.+-+...... ......+.|
T Consensus 1244 LIln---dG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP-~Ldqc~VtF 1309 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP-SLDQCAVTF 1309 (1516)
T ss_pred eEee---Cc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCc-cccceEEEe
Confidence 4432 33 4788764 33444332 1 122346899999998876 489998865432211 122334678
Q ss_pred ccCCcEEEEe
Q 005956 533 FSEGVSVAVQ 542 (667)
Q Consensus 533 s~dg~~lav~ 542 (667)
+..|.++-..
T Consensus 1310 NstG~VmYa~ 1319 (1516)
T KOG1832|consen 1310 NSTGDVMYAM 1319 (1516)
T ss_pred ccCccchhhh
Confidence 8888765443
No 315
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.14 E-value=0.0019 Score=68.95 Aligned_cols=289 Identities=16% Similarity=0.159 Sum_probs=135.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceee-eeeCCC-----CCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC-KSFTDD-----GGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
.|+.|.|+++..-||.|...|.|-||......... ....+. ..+......+.+.-...... .. ...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~-------~~-~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAP-------PS-LKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG---------TT--SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCC-------cc-ccc
Confidence 48999999999999999999999999876422111 000000 00111111222211111000 00 000
Q ss_pred cCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee---------CCCcEEEEEEee----CCC--
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---------HHNYVTCVQFNP----IDD-- 362 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~f~p----~d~-- 362 (667)
...|...+....++|++++.|.=|+++.|..+|.+.|.|++....+..-. ....|+++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 12355566667899999999988899999999999999998887776532 234788888863 122
Q ss_pred -CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEe--eCCCEEEEEecCCcEEEEEecCCcceeeeE-eeccccCc
Q 005956 363 -NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYI--PDGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKKT 438 (667)
Q Consensus 363 -~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~s--pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~-~~~~~~~~ 438 (667)
-.+++|...|.+.+|.+.- .......+..+... -++..+ .|..++..++....... .+.+. .
T Consensus 155 Si~L~vGTn~G~v~~fkIlp-----~~~g~f~v~~~~~~~~~~~~i~-------~I~~i~~~~G~~a~At~~~~~~l--~ 220 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILP-----SSNGRFSVQFAGATTNHDSPIL-------SIIPINADTGESALATISAMQGL--S 220 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE------GGG-EEEEEEEEE--SS-----------EEEEEETTT--B-B-BHHHHHGG--G
T ss_pred ceEEEEEeCCCCEEEEEEec-----CCCCceEEEEeeccccCCCceE-------EEEEEECCCCCcccCchhHhhcc--c
Confidence 3567777778877776520 00000001111100 011111 12223333332211100 00000 0
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEEcC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF-----TTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~-----spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.+..+ .-+++...+..++|+...+.....+..........+++ ...+..|++-..+|.|++|.+.
T Consensus 221 ~g~~i----------~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 221 KGISI----------PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp GT--------------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred cCCCc----------CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 00111 12344444678999998765444444322223334444 2356778888999999999999
Q ss_pred CCCcccccccc-----CccceeEEccCCcEEEEecC
Q 005956 514 ELCFPSSKQKN-----SVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 514 ~~~~~~~~~~~-----~~~~~~~fs~dg~~lav~w~ 544 (667)
..+........ .......|.++|.++....+
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 87764332221 11233578899996666433
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0013 Score=65.32 Aligned_cols=206 Identities=16% Similarity=0.055 Sum_probs=121.6
Q ss_pred CCcEEEEecCCCeEeEEeeCCCcEEEEE--EeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF 406 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~--f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l 406 (667)
+++|..||..+++.+........+.... ..+ ++..+++++.++.|+.||..+++.+........+...- ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6899999999999998886422122222 222 56778888899999999999999875444333322222 3356677
Q ss_pred EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC-
Q 005956 407 IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS- 485 (667)
Q Consensus 407 ~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~- 485 (667)
++++.++.+..+|..+++........... ...........+. + ..++++..++.|..+|..+.............
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP-PAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSC-TCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeecccccc-ccccccccCceEe--c-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 88888889999998888876542121110 0001112223333 2 47888888999999998866554443222211
Q ss_pred ---------eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 486 ---------QMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 486 ---------v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
+..-....++ .++.++.++.+..+|+.+++......... .......++..|.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISG--IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS---ECECEECCCTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCC--ccCCceeeCCEEEEEe
Confidence 1122222344 77777778864444999998554222111 1111445566665544
No 317
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.0036 Score=65.22 Aligned_cols=228 Identities=11% Similarity=0.060 Sum_probs=117.2
Q ss_pred EEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC-CCCEEEEEe----------------------
Q 005956 315 LAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI-DDNYFISGS---------------------- 369 (667)
Q Consensus 315 l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-d~~~l~sgs---------------------- 369 (667)
..+++++ .++-......|+-.|+.+.+....+. ....+-...|..+ ++..++-.-
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 4445655 55555555688888999888766665 4445545666532 344433221
Q ss_pred cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
....|.-.|+.+++...+......+..+.|+|....+++=|..| .-+||-++........+.-+ .....+.
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~----~~~e~~g 241 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR----MEGESVG 241 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC----CCCcccc
Confidence 12346667888888887777788889999999665555545444 24778777554433322211 1234455
Q ss_pred EEEEccCCCeEEEEEe-C---CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---------------
Q 005956 445 GIQFSRDESQRIMITS-E---DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC--------------- 505 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s-~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg--------------- 505 (667)
-=-|.|||..+...+. . +..|.-+|..+....... ........-.++||++++-=+.|.
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE------------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence 5568999866555443 2 224555666654332222 122345666689999887544432
Q ss_pred -cEEEEEcCCCCccccc-c----------ccCccceeEEccCCcEEEEecCCCCc
Q 005956 506 -RVYVWNYDELCFPSSK-Q----------KNSVRSCEHFFSEGVSVAVQWPGIGT 548 (667)
Q Consensus 506 -~I~iWd~~~~~~~~~~-~----------~~~~~~~~~fs~dg~~lav~w~~~~~ 548 (667)
.|++++++.+...... + ....-....|+|||+.+...++..+.
T Consensus 320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 5677888776542111 1 11123457899999999998887664
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.07 E-value=0.0007 Score=77.88 Aligned_cols=198 Identities=12% Similarity=0.164 Sum_probs=127.6
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.+.|.++.|..++.-++.+..+|.|.+-|..+....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------------------------- 103 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------------------------- 103 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------------------------------
Confidence 468999999999999999999999999877753221
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEec----CCCeEe-------------------EEee----------
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV----GCNQCL-------------------NVFD---------- 347 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~----~~~~~~-------------------~~~~---------- 347 (667)
....-...|.+++|+||. .++..+.++++.+-.- -.-+.+ ..|.
T Consensus 104 --ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~ 181 (1265)
T KOG1920|consen 104 --IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQ 181 (1265)
T ss_pred --eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccc
Confidence 122235679999999999 7777777777765432 000111 1111
Q ss_pred ------------CCCcEEEEEEeeCCCCEEEEEe----cC-CeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEE
Q 005956 348 ------------HHNYVTCVQFNPIDDNYFISGS----ID-GKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVG 409 (667)
Q Consensus 348 ------------h~~~V~~l~f~p~d~~~l~sgs----~D-g~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~g 409 (667)
..+.=+.|.|-- ||.+|++.. .+ .+|++||-+ +.+-. .....+.-.+++|-|.|..+++-
T Consensus 182 ~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 182 KIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred cccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeee
Confidence 011123478887 898988832 23 789999987 44332 22333445689999999998884
Q ss_pred e---cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE---EeCCCcEEEEECCc
Q 005956 410 S---ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI---TSEDSKLRILDGVD 472 (667)
Q Consensus 410 s---~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~---~s~dg~I~iwd~~~ 472 (667)
. .++.|.+|.-++-....-.+. .......+..++|+.++ ..|++ ......|++|-..+
T Consensus 260 q~~~sd~~IvffErNGL~hg~f~l~----~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRHGEFVLP----FPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eecCCCCcEEEEecCCccccccccC----CcccccchheeeecCCC-CceeeeecccccceEEEEEecC
Confidence 3 456789998765332211111 11122449999999984 66666 34445599998765
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.06 E-value=0.0018 Score=74.65 Aligned_cols=196 Identities=10% Similarity=0.120 Sum_probs=133.4
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec----CC---
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV----CE--- 381 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl----~~--- 381 (667)
+.|.++.|..+. .++.+..+|.|.+-|..+......-.-...|.+++|+| |+..++..+.++++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence 689999999887 78888888999999988776655555778999999999 9999999988888776532 10
Q ss_pred --------CeEE---------Eecc---------------------cCCceEEEEEeeCCCEEEEEe-----cCCcEEEE
Q 005956 382 --------KRVV---------DWAD---------------------VRDVISAICYIPDGKGFIVGS-----ITGTCHFY 418 (667)
Q Consensus 382 --------~~~~---------~~~~---------------------~~~~v~~v~~spdg~~l~~gs-----~dg~i~l~ 418 (667)
++.+ ++.+ ..+.=+.|+|--||+++++.. ....|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1111 0110 112234689999999999832 33789999
Q ss_pred EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE---eCCCcEEEEECCccee---eEEeCCCCCCeEEEEEc
Q 005956 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT---SEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFT 492 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~---s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~s 492 (667)
|.. +.+.... ....+.-.+++|-|.| ..+++. +.|+.|.+|.-+-..+ ..........+..++|+
T Consensus 228 drE-g~Lns~s-------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 228 DRE-GALNSTS-------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred ccc-chhhccc-------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 987 4333211 1112344689999986 556554 3566799997443222 12222234458999999
Q ss_pred CCCCEEEE---EeCCCcEEEEEcCCC
Q 005956 493 TTGKHIIS---IGDDCRVYVWNYDEL 515 (667)
Q Consensus 493 pdg~~l~s---gs~Dg~I~iWd~~~~ 515 (667)
.++..||+ ......|++|-+.+-
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999988 555556999988764
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=0.00024 Score=76.18 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=99.0
Q ss_pred CCceEEEEEee-CCCEEEEE----ecCCc----EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 391 RDVISAICYIP-DGKGFIVG----SITGT----CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 391 ~~~v~~v~~sp-dg~~l~~g----s~dg~----i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
.....++.|+- +.+.+.+. +.+|. -.+|++..++.+...+. .......+.+++++|+. ..++.|..
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvt----sipL~s~v~~ca~sp~E-~kLvlGC~ 279 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVT----SIPLPSQVICCARSPSE-DKLVLGCE 279 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEE----EEecCCcceEEecCccc-ceEEEEec
Confidence 33445566665 33444432 22332 35788876665543221 11224789999999995 89999999
Q ss_pred CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--c----cCccceeEEccC
Q 005956 462 DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--K----NSVRSCEHFFSE 535 (667)
Q Consensus 462 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~----~~~~~~~~fs~d 535 (667)
||.|.+||.......+.. ..-.++.++|+|+|.++++|+..|.+.+||+.-.......- . ....-...|...
T Consensus 280 DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~ 357 (545)
T PF11768_consen 280 DGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVS 357 (545)
T ss_pred CCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCc
Confidence 999999998766555543 45667899999999999999999999999987554322211 1 111122345556
Q ss_pred CcEEEEecCCCCc
Q 005956 536 GVSVAVQWPGIGT 548 (667)
Q Consensus 536 g~~lav~w~~~~~ 548 (667)
....-+.|.....
T Consensus 358 ~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 358 SSLVHIQWAPAPQ 370 (545)
T ss_pred chhheeEeccCCC
Confidence 6677778875543
No 321
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=1.2e-05 Score=79.91 Aligned_cols=121 Identities=12% Similarity=0.252 Sum_probs=94.7
Q ss_pred cccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-----eEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-----QCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
..+.|.++.|...+ .++.|...|.|...|++++ .+...+-|...|++++....++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 56789999998855 9999999999999999754 57778889999999988776788999999999999999986
Q ss_pred CeE----EEecccCCce--EEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 382 KRV----VDWADVRDVI--SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 382 ~~~----~~~~~~~~~v--~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
-+. ....+|-..- .-+-..+....+++++.|-..+||.+..+.+...
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 554 3344443221 1223345566788899999999999998877543
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.04 E-value=0.002 Score=69.54 Aligned_cols=178 Identities=10% Similarity=0.049 Sum_probs=108.4
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEeeCCCc--------EEEEEEee-CCCCEEEEEecCCeEEEEecCCCeEEEecccC
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY--------VTCVQFNP-IDDNYFISGSIDGKVRIWGVCEKRVVDWADVR 391 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p-~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~ 391 (667)
+.++.++.++.+..+|..+++.+..+....+ ...+.-.| ..+..++.++.++.+..+|+.+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 4667778889999999999887665531110 01111111 12456777788999999999999876433222
Q ss_pred CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
. ...+ ...+..+++++.+|.+..+|..+++.....-.... ....+.... + .+|++++.+|.|+++|..
T Consensus 286 ~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~------~~~~sp~v~-~--g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 286 S-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH------RLLTAPVLY-N--GYLVVGDSEGYLHWINRE 353 (394)
T ss_pred C-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC------CcccCCEEE-C--CEEEEEeCCCEEEEEECC
Confidence 1 1122 23567888888999999999988765432111111 112222222 3 378889999999999987
Q ss_pred cceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 472 DVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 472 ~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
+.....+.......+. ...+ .+..|+.++.||.|+.++.
T Consensus 354 tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 6554443321222222 2222 2457888899999998764
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0007 Score=75.17 Aligned_cols=216 Identities=16% Similarity=0.140 Sum_probs=129.3
Q ss_pred ecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc-EEEEEEeeCCCCEEEEEecCC-----eEEEEecCCC------
Q 005956 317 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY-VTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK------ 382 (667)
Q Consensus 317 ~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~-V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~------ 382 (667)
|++++ .++.|+.+|.|.+.+-. -+.++-|+ +... |..+.... ..++|++.+.|+ .|+|||+...
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 45555 99999999988887643 22324443 3333 44443332 446788777664 4899998643
Q ss_pred eEE---Eecc-----cCCceEEEEEeeCCCEEEEEecCCcEEEEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 383 RVV---DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 383 ~~~---~~~~-----~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+++ .... ...++.+++.+.+-+.+|+|-.+|.|..+.-.- .......+...+ ..+||++.+..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-----~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-----KEPITGLALRSDG 183 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-----CCCceeeEEecCC
Confidence 222 2222 245688999999999999999999999885321 111111222233 4899999999887
Q ss_pred CeEEEEEeCCCcEEEEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956 453 SQRIMITSEDSKLRILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 531 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 531 (667)
...++++. -..|.+|.+.... .......|+....|.+|++....+++++ +..|++|+.+....-........ ....
T Consensus 184 ~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k-k~~~ 260 (933)
T KOG2114|consen 184 KSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK-KEML 260 (933)
T ss_pred ceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe-EEEE
Confidence 55333333 3468888765322 1222334778888999977655465555 45699999886543332221111 1223
Q ss_pred EccCCcEEEEe
Q 005956 532 FFSEGVSVAVQ 542 (667)
Q Consensus 532 fs~dg~~lav~ 542 (667)
|..-|.++++.
T Consensus 261 ~~~~g~~L~v~ 271 (933)
T KOG2114|consen 261 VFSFGLLLCVT 271 (933)
T ss_pred EEecCEEEEEE
Confidence 33336666664
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.03 E-value=0.0039 Score=63.00 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=129.7
Q ss_pred eEEEEecCCC--eEEEEeCCC-cEEEEecCCCeEeEEeeCCC---cEEEEEEeeCCCCEEEEEec-----CCeEEEEecC
Q 005956 312 VLDLAWSNSN--YLLSCSMDK-TVRMWQVGCNQCLNVFDHHN---YVTCVQFNPIDDNYFISGSI-----DGKVRIWGVC 380 (667)
Q Consensus 312 V~~l~~s~~~--~l~s~s~Dg-~I~iWd~~~~~~~~~~~h~~---~V~~l~f~p~d~~~l~sgs~-----Dg~v~iwdl~ 380 (667)
...++.+|.. .++.+-.-| ...+||..+++....+.... .--...|++ |+++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 3456777854 566666665 46789999999887774221 122468999 9999998654 4789999998
Q ss_pred -CCe-EEEecccCCceEEEEEeeCCCEEEEEec------------------CCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 381 -EKR-VVDWADVRDVISAICYIPDGKGFIVGSI------------------TGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 381 -~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~------------------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
+-+ +-.+..+.-....+.+.|||+.|+++.. +.++.+.|..++.+..+ ..+. ...+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp--~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELP--PDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecC--ccccc
Confidence 333 3346666666777889999988888632 22455556666655432 2221 11234
Q ss_pred CCeEEEEEccCCCeEEEEEeCCC-------cEEEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 005956 441 NKITGIQFSRDESQRIMITSEDS-------KLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIG-DDCRV 507 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg-------~I~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs-~Dg~I 507 (667)
..|..+++.++| ..++..-..| -|.+++.......+.. ..-.+.+-+|++++++.++++.+ ..+.+
T Consensus 163 lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 678889998886 3333332222 2444443332222222 11346789999999999886665 56789
Q ss_pred EEEEcCCCCcccc
Q 005956 508 YVWNYDELCFPSS 520 (667)
Q Consensus 508 ~iWd~~~~~~~~~ 520 (667)
.+||..++.....
T Consensus 242 ~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 242 AVWDAATGRLLGS 254 (305)
T ss_pred EEEECCCCCEeec
Confidence 9999999876443
No 325
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.02 E-value=0.00011 Score=81.55 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=112.5
Q ss_pred eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec---------CCeEEEEecCC
Q 005956 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---------DGKVRIWGVCE 381 (667)
Q Consensus 312 V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~---------Dg~v~iwdl~~ 381 (667)
|.-+..+ +..|.+|...|+|.+-|..+.+.++++. |.+.|..+.. .|++|++++. |..|++||++.
T Consensus 180 v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEEec-CcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhh
Confidence 5444432 2378899999999999999999999996 9999988877 6889999885 55689999999
Q ss_pred CeEEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 382 KRVVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.+.+..........-+.|+|. ...+++.+..|.+.+-|..+...+.. ....+ ..+..+..+.+++++ ..++.+
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~----p~~s~i~~fDiSsn~-~alafg 330 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN----PNGSGISAFDISSNG-DALAFG 330 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc----cCCCcceeEEecCCC-ceEEEe
Confidence 887665554444566778884 46788999999999999443322211 11111 113559999999995 899999
Q ss_pred eCCCcEEEEE
Q 005956 460 SEDSKLRILD 469 (667)
Q Consensus 460 s~dg~I~iwd 469 (667)
..+|.|.+|.
T Consensus 331 d~~g~v~~wa 340 (1118)
T KOG1275|consen 331 DHEGHVNLWA 340 (1118)
T ss_pred cccCcEeeec
Confidence 9999999997
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.99 E-value=0.00049 Score=73.10 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=137.9
Q ss_pred CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccC-----------------
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR----------------- 391 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~----------------- 391 (667)
.+.+.|||+.+++..........+....|+| +++.++... ++.|.++++.++...++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4678999999987776665567888999999 899988875 678999999888766533211
Q ss_pred -CceEEEEEeeCCCEEEEEecC-CcEEE-----------------------------------EEecCCcceeeeEeecc
Q 005956 392 -DVISAICYIPDGKGFIVGSIT-GTCHF-----------------------------------YKASGNDLKLEKVDFHD 434 (667)
Q Consensus 392 -~~v~~v~~spdg~~l~~gs~d-g~i~l-----------------------------------~d~~~~~~~~~~~~~~~ 434 (667)
+.-.++-|+|||++|+....| ..+.. +|+.+++.. .+....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~--~~~~~~ 177 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT--ELDPPN 177 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC--EE---H
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE--Eeeecc
Confidence 234678899999999886543 22322 222222211 000000
Q ss_pred ccCcCCCCeEEEEEccCCCeEE-EEEeCCC---cEEEEECCcc--eeeEEe--CCCCCCeEEEEEc-CCCC-EEEEEeCC
Q 005956 435 RKKTSGNKITGIQFSRDESQRI-MITSEDS---KLRILDGVDV--IHKFKG--LPKSGSQMSASFT-TTGK-HIISIGDD 504 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l-~~~s~dg---~I~iwd~~~~--~~~~~~--~~~~~~v~~v~~s-pdg~-~l~sgs~D 504 (667)
........+..+.|.+++..++ ...+.+. .+.++|.... ...... ..--.......|. +++. +|.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 0011234577888999863122 2334433 3555665421 111111 1111222345554 5555 44455566
Q ss_pred C--cEEEEEcCCCCcccccccc-CccceeEEccCCcEEEEecCCCCcccccccCCCCC-CcCccCcCCCCCCcccC-CCc
Q 005956 505 C--RVYVWNYDELCFPSSKQKN-SVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR-DCSQKWDNLETAPWIRD-SER 579 (667)
Q Consensus 505 g--~I~iWd~~~~~~~~~~~~~-~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~-~~~ 579 (667)
| .|++++..++......... .+.....+.+++..+........+..+++-.-.+. ... ...-+...... ...
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~---~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE---PKCLTCEDGDHYSAS 334 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE---EEESSTTSSTTEEEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC---eEeccCCCCCceEEE
Confidence 6 5666677766544333333 34456788999888877666655555555443333 111 11122222333 678
Q ss_pred ccCCCCCCCC
Q 005956 580 FSLGSWFSND 589 (667)
Q Consensus 580 fS~~~~~~~~ 589 (667)
|||++.|++.
T Consensus 335 ~Spdg~y~v~ 344 (353)
T PF00930_consen 335 FSPDGKYYVD 344 (353)
T ss_dssp E-TTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 9999888764
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=0.002 Score=70.97 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=119.2
Q ss_pred ecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC----CeEEEEecCCCeEEEeccc
Q 005956 317 WSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 317 ~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D----g~v~iwdl~~~~~~~~~~~ 390 (667)
+.||| .+ .+.-..+.+.+.|.++.+....+.-......++++| +++++++.+.+ .++...+............
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45677 33 244456788889999888887777666667889999 88888887643 2333333322221111111
Q ss_pred CCceEEEEEeeCCCEEEEEecCCcEEEEEecC----CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASG----NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 466 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~----~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~ 466 (667)
.. .-++.++|++..++ ++.|.+.|.++ .......+.. +.....+.++|||...++++..+.+|.
T Consensus 279 ~~---iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 279 AR---IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred HH---HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEEEEeCCCCCcEE
Confidence 11 01344678877763 67899999887 2222222222 256788999999866666667799999
Q ss_pred EEECCcceeeE-----------EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 467 ILDGVDVIHKF-----------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 467 iwd~~~~~~~~-----------~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
|+|+.+....| ....-.......+|+++|....|---|..|..||+..
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99987644211 1111233456789999998888888899999999876
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.0013 Score=70.66 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=92.5
Q ss_pred cEEEEecCCC--eEeEEeeCCCcEEEEEEeeCCCCEEEEEe----cCCe----EEEEecCCCeEE----EecccCCceEE
Q 005956 331 TVRMWQVGCN--QCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGK----VRIWGVCEKRVV----DWADVRDVISA 396 (667)
Q Consensus 331 ~I~iWd~~~~--~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----~Dg~----v~iwdl~~~~~~----~~~~~~~~v~~ 396 (667)
.+.++.+..+ +.+..+.......++.|+..+++.+.+.. .+|. -.+|++...++. ........+.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 3444544433 23333345555678888875666666543 2333 467777766543 34567888999
Q ss_pred EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
.+++|+...++.|+.||.|.+||.........+. .-..+.++|+|+| ..+++++..|.+.+||+.
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka---------~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA---------EFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCeeeeeee---------cccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence 9999999999999999999999987653332211 2457889999996 899999999999999965
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.95 E-value=0.0021 Score=69.65 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=119.1
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
...-....|.++|+|++++. +.||...|+.....
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~--------------------------------------------- 63 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--------------------------------------------- 63 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---------------------------------------------
Confidence 34445778999999999998 45677777763320
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
.. ...+.-...+|.+.+.+++-....+|.|+.--+.+..+.+.....+..+-. |.+|+..+. +.|.+||+
T Consensus 64 ---r~--k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 64 ---RN--KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp ---EE--EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred ---cc--cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 10 123455678899878888888889999974333333334443333444432 666666654 48999999
Q ss_pred CCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC--------cc--eeeeEeeccccCcCCCCeEEEEEc
Q 005956 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN--------DL--KLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~--------~~--~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
.+++++....... |..+.|+++|.+++..+.+ .+.+++.... .. ....+ +. ....|.+.+|.
T Consensus 134 ~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E----~~~~IkSg~W~ 205 (443)
T PF04053_consen 134 ETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HE----ISERIKSGCWV 205 (443)
T ss_dssp TT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EE----E-S--SEEEEE
T ss_pred hHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EE----ecceeEEEEEE
Confidence 9999988766554 8999999999999998865 6777665433 00 11111 11 02578888998
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.+ -++.++.. .|+.+=..+. ..+.. -..++.-+.+.+..+.|+....|+.|..+.++..
T Consensus 206 ~d--~fiYtT~~--~lkYl~~Ge~-~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 206 ED--CFIYTTSN--HLKYLVNGET-GIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TT--EEEEE-TT--EEEEEETTEE-EEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred cC--EEEEEcCC--eEEEEEcCCc-ceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 75 34444443 6666433221 11221 1334555666676778888888888888877654
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0099 Score=60.90 Aligned_cols=202 Identities=13% Similarity=0.134 Sum_probs=118.4
Q ss_pred EEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC-CCeEEE----
Q 005956 315 LAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC-EKRVVD---- 386 (667)
Q Consensus 315 l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~-~~~~~~---- 386 (667)
++++.++ +++ -.+--.+|.|-|+..++.+..+.-.+ |....|..+.-|.+-+.||.+.-..+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 4566676 333 33445678899999999888876554 333334344668888899999998887 444432
Q ss_pred -ecccCC-ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCc----CCCCeEEEEEccCCCeEEEEE
Q 005956 387 -WADVRD-VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKT----SGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 387 -~~~~~~-~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~----~~~~I~~l~~sp~g~~~l~~~ 459 (667)
+....+ .+..-++...+..++.-+.+|.|+-.|+........ .+.+...... ..+...-+++++..+.+++..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 111122 233445566667777789999999999987764443 3332211000 112334567776543333322
Q ss_pred e--C-----CC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcCCCCcccc
Q 005956 460 S--E-----DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIG-DDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 460 s--~-----dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~Dg~I~iWd~~~~~~~~~ 520 (667)
. . |+ .|.++|+.+..+..+.. -...+.++.++.+.+ +|++.+ .++.|.|||..+++....
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 1 1 11 68888887655544442 134577899988876 665554 578999999999876443
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.0065 Score=60.41 Aligned_cols=205 Identities=13% Similarity=0.206 Sum_probs=119.8
Q ss_pred eeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 303 QELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
..+.+-...+..|+|.|+. +++.....+.|...+.. |+.++.+. .....-.|++.. ++.++++--.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEE
Confidence 3455666679999999975 55566677888888864 78888775 335678888876 666666555689999998
Q ss_pred cCCCe----E---E--E--ec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC--CcceeeeEeeccc--cCcCCCC
Q 005956 379 VCEKR----V---V--D--WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDR--KKTSGNK 442 (667)
Q Consensus 379 l~~~~----~---~--~--~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~--~~~~~~~ 442 (667)
+.... . . . .. ..+..+-.++|+|.++.|+++-...-..+|.+.. ............. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 83311 1 1 1 11 2345689999999988998888887788888875 2222111111110 1223456
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~-------~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
+.+++++|..+.+++.+.....|.++|.. +.+..+.... .-...-.|+|.++|++ +..++-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 88999999877888888888899999965 3333343322 1235678999999854 445577776665
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00028 Score=71.81 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=74.0
Q ss_pred CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
++...+.+|...|.+++|+|.+ ++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|+.|-.+|.|.||
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 3455677899999999999966 78899999999999999999999988779999999999777889999999999999
Q ss_pred ecCCCe
Q 005956 378 GVCEKR 383 (667)
Q Consensus 378 dl~~~~ 383 (667)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998744
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00076 Score=74.42 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=59.4
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
+++++|+|.. .|+.|-.-|.+.+|...+.+..... .|..+|..+.|+| +|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 5669999988 8888888899999999877665554 4999999999999 99999999999999999765
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.00094 Score=72.02 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=120.7
Q ss_pred ceeeeccccceEEEEecCCC-eEEEE--eCC--CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCCe--
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSC--SMD--KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGK-- 373 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~--s~D--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg~-- 373 (667)
...+..-...+..-.|+|++ .++.. ... ..+.++++.+++..........-...+|+| |++.|+.. ..||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCcc
Confidence 33444445567778899988 33322 222 359999999988777776666666779999 77766654 45554
Q ss_pred EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 374 VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
|+++|+.++....+....+.-..-.|+|||+.++..+. .| .|.++++.+.... .+.... ..-..-.|+|
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~--riT~~~------~~~~~p~~Sp 335 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT--RLTFSG------GGNSNPVWSP 335 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--EeeccC------CCCcCccCCC
Confidence 77778888886665555555567789999999988764 34 4556666655442 233222 1122678999
Q ss_pred CCCeEEEEEeCCCc--EEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 451 DESQRIMITSEDSK--LRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 451 ~g~~~l~~~s~dg~--I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
||..+++....+|. |.+.|...... .+...........+|.++|+.|+..+..
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 98655555544555 55555443221 2222234444566788888887766543
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.0031 Score=68.17 Aligned_cols=191 Identities=13% Similarity=0.025 Sum_probs=117.2
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce-----
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI----- 394 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v----- 394 (667)
++.++.++.++.+..+|..+|+.+........+.+--.- .+..++.+..++.|..+|..+++.+-........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 357778888999999999999998887654444322111 2456777888999999999999877433322110
Q ss_pred -EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC-CCCeEEEEEcc--CCCeEEEEEeCCCcEEEEEC
Q 005956 395 -SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNKITGIQFSR--DESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 395 -~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~-~~~I~~l~~sp--~g~~~l~~~s~dg~I~iwd~ 470 (667)
.+... .+..+++++.+|.+..+|..+++..... ......... ......+..+| .+ ..+++++.++.+..+|.
T Consensus 198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEEC
Confidence 11111 2346777888999999999887764431 111000000 00000111111 12 36777788999999998
Q ss_pred CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
.+.....+.. ......+. ..+..|+.++.+|.|+.+|..+++..+.
T Consensus 274 ~tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 274 RSGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCCCEEEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 8665555432 11111222 2466788888999999999998876543
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0087 Score=65.49 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=86.4
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
|...|.--+++..++||+.|+.-|.+.+|+-..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------------------------------------------- 67 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------------------------------------------- 67 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh--------------------------------------------
Confidence 455566667778899999999999999998765211
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE-----Ee--eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN-----VF--DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~-----~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
......+-.+.+..+..+++. ++|.|+..|.|.++.+....+-. .. .|...|+|++|++ ++..+++|...|
T Consensus 68 ~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~G 146 (726)
T KOG3621|consen 68 RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQG 146 (726)
T ss_pred hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCc
Confidence 112222344556667778877 77888889999999887643211 11 2788999999999 999999999999
Q ss_pred eEEEEecCC
Q 005956 373 KVRIWGVCE 381 (667)
Q Consensus 373 ~v~iwdl~~ 381 (667)
+|.+-.+..
T Consensus 147 kv~~~~L~s 155 (726)
T KOG3621|consen 147 KVVLTELDS 155 (726)
T ss_pred eEEEEEech
Confidence 998887765
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.00095 Score=76.06 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=99.3
Q ss_pred CCCEEEEE-ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeC-------CCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956 361 DDNYFISG-SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPD-------GKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (667)
Q Consensus 361 d~~~l~sg-s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spd-------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~ 431 (667)
+.++|+.- .....|+-.|+..|+++. |..+.. +.-..+.|+ ....++|-.+..+..||.+-..... +.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~--v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL--VD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCCce--ee
Confidence 34444443 345789999999999986 444433 323344453 3356778889999999998644211 11
Q ss_pred eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
...+........+|++-+.+| +||+|+.+|.||+||-.....+....+-+.+|.++..+.||++|++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 122222345678899988887 999999999999999432222222233578999999999999998877 56788887
Q ss_pred c
Q 005956 512 Y 512 (667)
Q Consensus 512 ~ 512 (667)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.60 E-value=0.0046 Score=68.20 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=75.8
Q ss_pred CCCEEEEEecCCeEEEEecCC-----CeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee-eEee-
Q 005956 361 DDNYFISGSIDGKVRIWGVCE-----KRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE-KVDF- 432 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~-----~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~-~~~~- 432 (667)
++++... .+++|.+.|..+ .+++........+..+.++|||+++++++ .++++.++|+...+.... .+..
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 6666665 367899999998 46777777888889999999999988765 588999999987553110 0000
Q ss_pred ---ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 433 ---HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 433 ---~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
.... .-+..-...+|.++| +.+.+-.-|..|..||+..
T Consensus 365 ~~vvaev-evGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEP-ELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEee-ccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 0000 011233456888886 6777778899999999765
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.59 E-value=0.029 Score=58.76 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=104.7
Q ss_pred CcEEEEecCCC-----eEe--EEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-EEEecccCCceEEEEEee
Q 005956 330 KTVRMWQVGCN-----QCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIP 401 (667)
Q Consensus 330 g~I~iWd~~~~-----~~~--~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~sp 401 (667)
|.|.++++... +.. ......++|++++-. ++. |+.+ ..+.|++|++...+ +.........+...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 222 233478899998876 344 4443 35899999999888 665444444444445555
Q ss_pred CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---------
Q 005956 402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--------- 472 (667)
Q Consensus 402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------- 472 (667)
.++++++|.....+.++...........+.- ......++++.|-+++ ..++++..+|.+.++....
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~----d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~ 212 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVAR----DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGD 212 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEE----ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTT
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEe----cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCccccccc
Confidence 5779999999999998876653322222211 1113568999999776 5999999999999987431
Q ss_pred -ceeeEEeCCCCCCeEEE---EEcC--CCC------EEEEEeCCCcEEEE
Q 005956 473 -VIHKFKGLPKSGSQMSA---SFTT--TGK------HIISIGDDCRVYVW 510 (667)
Q Consensus 473 -~~~~~~~~~~~~~v~~v---~~sp--dg~------~l~sgs~Dg~I~iW 510 (667)
.............|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 213 ~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 213 PKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 11222222245567766 4444 222 37777788888733
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0013 Score=71.72 Aligned_cols=163 Identities=9% Similarity=0.117 Sum_probs=109.5
Q ss_pred CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
+...|.--++.. .+++++.|+..|.+++|+-.+++...... ..+.+...+++++..++|+|+..|.|.+|.+.. ..
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-EL 109 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cC
Confidence 333333334444 78999999999999999988887665444 566677888999999999999999999999987 44
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeE---EeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKF---KGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~---~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
+.....+....+.|...|++++|++++ ..+++|...|+|..-.+.. ..... ......+.|..+... ++.+|++.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence 444333333344578999999999996 8999999999998876554 11111 111134566666653 33344443
Q ss_pred eCCCcEEEEEcCCCC
Q 005956 502 GDDCRVYVWNYDELC 516 (667)
Q Consensus 502 s~Dg~I~iWd~~~~~ 516 (667)
.. . -.+++.+...
T Consensus 188 l~-r-~~Lc~tE~et 200 (726)
T KOG3621|consen 188 LT-R-CILCQTEAET 200 (726)
T ss_pred hh-h-hheeecchhH
Confidence 32 2 2345555443
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.58 E-value=0.0024 Score=68.92 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=116.6
Q ss_pred CCCcEEEEEEeeCCCCEEEEEe---cC-CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCc--EEEEEe
Q 005956 348 HHNYVTCVQFNPIDDNYFISGS---ID-GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGT--CHFYKA 420 (667)
Q Consensus 348 h~~~V~~l~f~p~d~~~l~sgs---~D-g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~--i~l~d~ 420 (667)
....+..-.|+| ++..++..+ .. ..+.++|+.+++........+.-....|+|||+.|+... .||. |.++|+
T Consensus 191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344666778888 666544432 22 459999999988776666666777789999999887654 5665 556666
Q ss_pred cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc-ceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
.+..... +.. ..+.-+.-.|+|||..++++++..|.-.|| |... ....+.. ....-..-.|+|||++
T Consensus 270 ~~~~~~~----Lt~----~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 270 DGKNLPR----LTN----GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPDGDK 339 (425)
T ss_pred CCCccee----ccc----CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCCCCE
Confidence 6655322 111 112334678999998888888888865555 4432 2233333 2222227789999999
Q ss_pred EEEEeCC-Cc--EEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 498 IISIGDD-CR--VYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 498 l~sgs~D-g~--I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
|+..+.. |. |.+.++.++................+.++|..+.......
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 9887743 44 6667766655322223333344457788888777755443
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.55 E-value=0.071 Score=55.76 Aligned_cols=173 Identities=17% Similarity=0.324 Sum_probs=112.7
Q ss_pred CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC------CCEEEEEec---------C-CeEEEEecCCC-----eE--
Q 005956 330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID------DNYFISGSI---------D-GKVRIWGVCEK-----RV-- 384 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d------~~~l~sgs~---------D-g~v~iwdl~~~-----~~-- 384 (667)
..|++.|..+.+.+..+. ....+++++..... ..+|+.|+. . |.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358889988888777664 44455555443311 467777753 2 88999999884 33
Q ss_pred EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc-ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+......++|++++-- +| .|+++ .++.|.+|++...+ +... ..... ...++++....+ ++++|....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~-~~~~~-----~~~i~sl~~~~~---~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKK-AFYDS-----PFYITSLSVFKN---YILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEE-EEE-B-----SSSEEEEEEETT---EEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhh-heecc-----eEEEEEEecccc---EEEEEEccc
Confidence 3345668889998865 33 44444 45799999999887 3332 11211 146777777643 888998888
Q ss_pred cEEEE--ECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 464 KLRIL--DGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 464 ~I~iw--d~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.+.++ +.... ...+........++++.|-++++.++.+..+|.|.++..+.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88876 43221 22333333456688898886778999999999999999864
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.52 E-value=0.14 Score=55.55 Aligned_cols=244 Identities=15% Similarity=0.172 Sum_probs=130.5
Q ss_pred ccEEEEEEcCCCCEEEEE-ECC----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 223 GCIWTLKFSPDGRYLASG-GED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latg-s~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
-.+..+.+||||++||-+ +.. ..|+|+|+.++....
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--------------------------------------- 164 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--------------------------------------- 164 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------------------------------------
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------------------------------------
Confidence 344578899999998865 333 359999998742211
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCC-----------CcEEEEecCCCeE--eEEee--CCCc-EEEEEEeeC
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----------KTVRMWQVGCNQC--LNVFD--HHNY-VTCVQFNPI 360 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D-----------g~I~iWd~~~~~~--~~~~~--h~~~-V~~l~f~p~ 360 (667)
..+.. .....+.|.+++ .|+....+ ..|+.|++.+... ..++. .... ...+..++
T Consensus 165 -----d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~- 236 (414)
T PF02897_consen 165 -----DGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK- 236 (414)
T ss_dssp -----EEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-
T ss_pred -----Ccccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-
Confidence 01111 112238999997 44433322 2478888887643 34554 2333 67888888
Q ss_pred CCCEEEEEecC----CeEEEEecCCC-----eEEEecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcceee
Q 005956 361 DDNYFISGSID----GKVRIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 361 d~~~l~sgs~D----g~v~iwdl~~~-----~~~~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~~~ 428 (667)
++++++..... ..+.+.|+..+ ....+......+....-+..+.+++... ..+.|.-.++........
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~ 316 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEW 316 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGE
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccc
Confidence 88887765433 34788888775 3444444333443333333443443332 234566666665543111
Q ss_pred e-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEE-Ee-
Q 005956 429 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIIS-IG- 502 (667)
Q Consensus 429 ~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs- 502 (667)
. .-+... ....+..+....+ .+++....++ .|+++++. ............+.|..+...++++.+.. .+
T Consensus 317 ~~~l~~~~---~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 317 WTVLIPED---EDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp EEEEE--S---SSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred eeEEcCCC---CceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 1 111111 0124556665543 5666665555 68889988 44333333334455666665566654432 22
Q ss_pred --CCCcEEEEEcCCCCcc
Q 005956 503 --DDCRVYVWNYDELCFP 518 (667)
Q Consensus 503 --~Dg~I~iWd~~~~~~~ 518 (667)
.-++|+.||+.+++..
T Consensus 392 ~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 392 FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEEETTTTCEE
T ss_pred CCCCCEEEEEECCCCCEE
Confidence 2368999999988753
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.029 Score=60.12 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=138.6
Q ss_pred eEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec---CCeEEEEecCCCeEEE
Q 005956 312 VLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI---DGKVRIWGVCEKRVVD 386 (667)
Q Consensus 312 V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~---Dg~v~iwdl~~~~~~~ 386 (667)
-..++.++.+ .++....+..|.+.|..+........-......+++.| +++.++.+.. ++++.+.|-.++++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3456667766 45555567899999988888888877555788999999 7766666555 6889999999988876
Q ss_pred ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--C
Q 005956 387 WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--S 463 (667)
Q Consensus 387 ~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--g 463 (667)
..........++++|+|+.+++.. .++.+.++|..+..... ............-..+.+.|+|....++-..+ +
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 544433448899999999777665 78899999977655431 00000111123456788999985455544444 6
Q ss_pred cEEEEECCcceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCc
Q 005956 464 KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDD-CRVYVWNYDELCF 517 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~D-g~I~iWd~~~~~~ 517 (667)
.+.+.|............-.. ....+.++|+|+++.+.... +.+.+-|..+...
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 888898775433333111112 56678999999999988544 7888888877654
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.066 Score=54.54 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=108.5
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE---------------EeeCCCcEEEEE-EeeCCCCEEEEEecCCeE
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN---------------VFDHHNYVTCVQ-FNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~---------------~~~h~~~V~~l~-f~p~d~~~l~sgs~Dg~v 374 (667)
|..+...++- .|+.- .|+.+.++++..-.... .+.....+...+ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 8888888865 33333 35999999987543333 222333444444 112234444455556689
Q ss_pred EEEecCCC-----eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc------cCcCCCCe
Q 005956 375 RIWGVCEK-----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KKTSGNKI 443 (667)
Q Consensus 375 ~iwdl~~~-----~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~------~~~~~~~I 443 (667)
.+|..... +..+-....+.+.+++|. ++.+++|..+ ...+.|+.+...... ...... ......++
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSEL-LDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEE-eCccCCcchhhhcccCCCce
Confidence 99887653 344445566889999998 5678888755 578888886544321 111110 01122344
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
..+....+ .+|++. +..-.+.|.. ...+..... -...+.++++. ..||+..+. +.|.||++.+++....
T Consensus 193 ~~~~~~~~--e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 193 GIFQLSDN--EFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred EEEEeCCc--eEEEEe--cceEEEEcCCCCcCcccEEE-cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 45555433 455543 2223333322 222211111 13355566663 468888776 4599999999976443
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.072 Score=57.64 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=106.1
Q ss_pred cEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc----cCC----ceEEEEEee
Q 005956 331 TVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD----VRD----VISAICYIP 401 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~----~~~----~v~~v~~sp 401 (667)
.|+||+.. |+.+..+. ..+.|.++.|.. + ..|+....||.+++||+.... ..... ... .+.+..+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 48899876 44555554 338999999986 4 455666789999999997555 11111 111 122222222
Q ss_pred CCCEEEEEecCCcEEEEEecCCcceeeeE-eeccccC-cC-CCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCcceeeE
Q 005956 402 DGKGFIVGSITGTCHFYKASGNDLKLEKV-DFHDRKK-TS-GNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKF 477 (667)
Q Consensus 402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~-~~~~~~~-~~-~~~I~~-l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~ 477 (667)
+| +++-+.++.+.+..--......... ....... .+ ...... ..++.+. ...+....++.+.+.+......
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc--
Confidence 33 5555556555444322211111111 1111000 00 011111 2344443 3444445556666555333211
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--ccCccceeEEccCCcEEEEec
Q 005956 478 KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 478 ~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~fs~dg~~lav~w 543 (667)
....+++..+++||+|++||.-..+|.+.|.+.+-.+...... .......+.|..++ .+++.|
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d-av~l~~ 277 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND-AVVLSW 277 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC-cEEEEe
Confidence 1134689999999999999999999999998765443322222 22333445666543 455566
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.42 E-value=0.00011 Score=78.86 Aligned_cols=202 Identities=14% Similarity=0.203 Sum_probs=130.2
Q ss_pred ccEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 223 GCIWTLKFSPD--GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 223 ~~I~~v~fspd--g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
..+.|++.+-+ ...|+.|..+|.|-+-.+....- .
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------------------------------S 93 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------------------------------S 93 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------------------------------c
Confidence 34667766543 34888999999998877653110 0
Q ss_pred cceeeeccccceEEEEecCCC--eEEEEe----CCCcEEEEecCCC--eEeE--Ee-e-CCCcEEEEEEeeCCCCEEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN--YLLSCS----MDKTVRMWQVGCN--QCLN--VF-D-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~--~l~s~s----~Dg~I~iWd~~~~--~~~~--~~-~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
......+|....++++|++-. .|++|- .|..+.|||+.++ .+.. .| . .......++|.. +.+++++|
T Consensus 94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaG 172 (783)
T KOG1008|consen 94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAG 172 (783)
T ss_pred cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcc
Confidence 122334788899999999854 666652 3568999999876 2211 11 1 233455788886 88999999
Q ss_pred ecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEe-cCCcceeeeEeeccccCcCCCCeEEE
Q 005956 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKA-SGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~-~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
.....+.++|++........-....+..+.+.| .+++++.- .||.|-+||. +.-+.....+ .+. .+.....+..+
T Consensus 173 m~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i-~~~-~N~~~~~l~~~ 249 (783)
T KOG1008|consen 173 MTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQII-LRN-ENKKPKQLFAL 249 (783)
T ss_pred cccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHH-hhC-CCCcccceeeE
Confidence 999999999998543322222223456677788 66666654 4999999993 3333222211 111 22334579999
Q ss_pred EEccCCCeEEEEEeCC-CcEEEEECC
Q 005956 447 QFSRDESQRIMITSED-SKLRILDGV 471 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~d-g~I~iwd~~ 471 (667)
+|+|.....+++...| ++|+++|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EeccCCcchhhhhccCcceEEEeccc
Confidence 9999755566666655 589999864
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.38 E-value=0.075 Score=59.07 Aligned_cols=205 Identities=12% Similarity=0.076 Sum_probs=116.5
Q ss_pred CCCcEEEEecCCCeEeEEeeCCC---------------------cEE-EEEEeeCCCCEEEEEecCC-------------
Q 005956 328 MDKTVRMWQVGCNQCLNVFDHHN---------------------YVT-CVQFNPIDDNYFISGSIDG------------- 372 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~~~~~~~h~~---------------------~V~-~l~f~p~d~~~l~sgs~Dg------------- 372 (667)
.++.|..+|..+++.+..+.... .|+ ..++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 46788999999998887765211 011 233443 456777777655
Q ss_pred -----eEEEEecCCCeEEEeccc--CC-----ceEEEEEe----eCCC---EEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956 373 -----KVRIWGVCEKRVVDWADV--RD-----VISAICYI----PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 373 -----~v~iwdl~~~~~~~~~~~--~~-----~v~~v~~s----pdg~---~l~~gs~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
.|.-+|+.+++..-.... .. ......+. -+|. .+++++.+|.+..+|..+++.....-..
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~- 330 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV- 330 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-
Confidence 799999999987743221 10 11111111 1343 5778889999999999998876542110
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEE------------------eCCCcEEEEECCcceeeEEeCCCC--------CCeE
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMIT------------------SEDSKLRILDGVDVIHKFKGLPKS--------GSQM 487 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~------------------s~dg~I~iwd~~~~~~~~~~~~~~--------~~v~ 487 (667)
...+...| + .++++ ..+|.|.-+|..+.....+..... ....
T Consensus 331 ---------~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 331 ---------EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred ---------ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 01122222 1 22221 235667777766554444432110 1111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcc--ceeEEccCCcEEEEecCCC
Q 005956 488 SASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR--SCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~--~~~~fs~dg~~lav~w~~~ 546 (667)
.-.....+.+|+.++.||.|+.+|.++++........... +-+.|..+|+..+....+.
T Consensus 399 ~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 399 GGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred CcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 1111124678999999999999999999987665433222 2244566777666655443
No 349
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0045 Score=68.59 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
+++++|+|..-.||.|-+-|.+.+|...+.+ .-..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e---------------------------------------------~htv 96 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE---------------------------------------------THTV 96 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce---------------------------------------------eeee
Confidence 4569999998899999999999999877521 1222
Q ss_pred eeccccceEEEEecCCC-eEEEEeCCCcEEEEecC
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG 338 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~ 338 (667)
...|+.+|..+.||++| .|+++..=|.|.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34699999999999999 99999999999999765
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.093 Score=56.29 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=144.5
Q ss_pred ceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCC-EEEEEecCCeEEEEecCCCeEE
Q 005956 311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDN-YFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 311 ~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~-~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
....+...+++ +++....+ .+...+...........-. ..-..++.++ .+. .++....+..|.+.|..+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCccccee
Confidence 34455666666 22222333 4555555422222222222 4556778888 555 5666666789999998888887
Q ss_pred EecccCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 386 DWADVRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 386 ~~~~~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
...........++++|+++.+.++.. ++.+.+.|..++..... + ..+. .+ ..+++.|+|...+++-..+
T Consensus 110 ~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~-~vG~-----~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 110 GSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I-PVGN-----TP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E-ecCC-----Cc-ceEEECCCCCeEEEEecCC
Confidence 76666668889999999988887665 57888888887776544 2 2221 33 8999999985566666688
Q ss_pred CcEEEEECCcceeeE-E---eCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcccc-ccccC-ccceeEEc
Q 005956 463 SKLRILDGVDVIHKF-K---GLPKSGSQMSASFTTTGKHIISIGDD---CRVYVWNYDELCFPSS-KQKNS-VRSCEHFF 533 (667)
Q Consensus 463 g~I~iwd~~~~~~~~-~---~~~~~~~v~~v~~spdg~~l~sgs~D---g~I~iWd~~~~~~~~~-~~~~~-~~~~~~fs 533 (667)
+.|.+.|........ . ...-......+.++|+|.+++..... +.+.+.|..++..... ..... ......++
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~ 261 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD 261 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeEC
Confidence 999999966432221 1 11123445678899999987776544 5888888888765433 11111 34456889
Q ss_pred cCCcEEEEecCC
Q 005956 534 SEGVSVAVQWPG 545 (667)
Q Consensus 534 ~dg~~lav~w~~ 545 (667)
|+|..+-+.-..
T Consensus 262 p~g~~~yv~~~~ 273 (381)
T COG3391 262 PAGKAAYVANSQ 273 (381)
T ss_pred CCCCEEEEEecC
Confidence 999877776443
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.047 Score=54.35 Aligned_cols=201 Identities=16% Similarity=0.216 Sum_probs=106.0
Q ss_pred eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+.|.+-...|..|+|+|+.. ++|+....+.|...+.. +
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G---------------------------------------- 53 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G---------------------------------------- 53 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C----------------------------------------
Confidence 45556666799999999866 55555566766655543 1
Q ss_pred ccccCCccee--eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe------EeEEee------CCCcEEEEEEee
Q 005956 295 FQIEESPLQE--LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ------CLNVFD------HHNYVTCVQFNP 359 (667)
Q Consensus 295 ~~~~~~~~~~--l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~------~~~~~~------h~~~V~~l~f~p 359 (667)
+.+.. +.+ .+..-.|++..++ ++++.-.++.+.++++.... ....+. ++..+-.++|.|
T Consensus 54 -----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~ 127 (248)
T PF06977_consen 54 -----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP 127 (248)
T ss_dssp ------EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET
T ss_pred -----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC
Confidence 11222 223 3567888998888 45555568999999884321 112221 445689999999
Q ss_pred CCCCEEEEEecCCeEEEEecCC---C-eE--EEe------cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcce
Q 005956 360 IDDNYFISGSIDGKVRIWGVCE---K-RV--VDW------ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~---~-~~--~~~------~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
.++.|+.+-...-..+|.+.. . .. ... ......+.+++++|.. ++++....+..+..+|... +..
T Consensus 128 -~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~~ 205 (248)
T PF06977_consen 128 -KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RVV 205 (248)
T ss_dssp -TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EE
T ss_pred -CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CEE
Confidence 666666666666667776654 1 11 111 1123458899999954 5566666777888888543 322
Q ss_pred eeeEeecccc---CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 427 LEKVDFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 427 ~~~~~~~~~~---~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
..+.+.... ...-...-+|+|.++| .|++.++-+..++|
T Consensus 206 -~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 206 -SSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred -EEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 223332211 1112456789999986 56666676666654
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.26 E-value=0.0005 Score=45.46 Aligned_cols=36 Identities=39% Similarity=0.939 Sum_probs=32.5
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEE
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWH 250 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWd 250 (667)
...+.+|...|+++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345678999999999999999999999999999996
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.02 Score=48.73 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=72.2
Q ss_pred eEEEEec---CCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956 312 VLDLAWS---NSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (667)
Q Consensus 312 V~~l~~s---~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~ 386 (667)
|++|++. .+| .|+.|+.|..||+|+-+ ..+..+.....|+++.-.. +..|+.+..+|+|-+|+-... +-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 5666654 354 89999999999999854 7778888888999988876 578999999999999986332 222
Q ss_pred ecccCCceEEEEEee-CC---CEEEEEecCCcEEE
Q 005956 387 WADVRDVISAICYIP-DG---KGFIVGSITGTCHF 417 (667)
Q Consensus 387 ~~~~~~~v~~v~~sp-dg---~~l~~gs~dg~i~l 417 (667)
.. .+..++++++.. ++ ..|++|-.+|.|.+
T Consensus 77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22 333466665544 32 36888888887753
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.26 E-value=0.062 Score=52.21 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=80.7
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce-EEEEEe
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI-SAICYI 400 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v-~~v~~s 400 (667)
+++.|+..+.+.--|..+|+..........|.+-+.- -+++++.|...|.+++.+..++........-+.| ......
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 7788888888888999999888776666666665555 3678999999999999999999655433322333 233456
Q ss_pred eCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 401 PDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 401 pdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
+++..+.+|+.|++.+..|.++.....+
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999988776544
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.12 Score=53.22 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=99.3
Q ss_pred ecCCCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEec-----------CCeEEEEec
Q 005956 317 WSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSI-----------DGKVRIWGV 379 (667)
Q Consensus 317 ~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~-----------Dg~v~iwdl 379 (667)
....+.|+++... +.+++.+++..+..+. .....+.+...| ++.+.+.... -|.|+.+|.
T Consensus 74 ~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 74 IDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred ecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC
Confidence 3444566666543 6667776665533331 223456777788 7766555433 133555554
Q ss_pred CCCeEEE-ecccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 380 CEKRVVD-WADVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 380 ~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
.+..+. ...+-...+.++||||++.+.++.. .+.|+-|++........ ...... .....+..-.++...+| .+.
T Consensus 151 -~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDadG-~lw 227 (307)
T COG3386 151 -DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDADG-NLW 227 (307)
T ss_pred -CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCCC-CEE
Confidence 344443 4444566788999999988877655 47888887763111111 000000 11122445566676776 344
Q ss_pred EEEeCC-CcEEEEECC-cceeeEEeCCCCCCeEEEEE-cCCCCEEEEEeC
Q 005956 457 MITSED-SKLRILDGV-DVIHKFKGLPKSGSQMSASF-TTTGKHIISIGD 503 (667)
Q Consensus 457 ~~~s~d-g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~ 503 (667)
+++..+ +.|.+|+.. +....+.. ....+++++| .|+.+.|+..+.
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEec
Confidence 333333 389999876 44455554 3367778888 556666655543
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0057 Score=64.78 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=98.2
Q ss_pred EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCE-------EEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG-------FIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~-------l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
|.++.....++-.|+..|+++.--.....|+-+.+.|+.+. -++|-.+..|.-||.+-...... ...+.+..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl-~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL-AVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee-eeeecccc
Confidence 34455557789999999999864444444888888887642 35677888899999884433111 11122222
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.......|++-..+| +|++|+.+|.|++||--....+....+-+.+|..+..+.+|++|++.+ +.++.+-+..
T Consensus 428 ~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 233566777777776 999999999999999532222222333678999999999999998876 5666666653
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.11 E-value=0.021 Score=48.52 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=71.1
Q ss_pred EEEEEEeeCC---CCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 352 VTCVQFNPID---DNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 352 V~~l~f~p~d---~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
|+++++...+ .+.|++|+.|..||+|+-. .++.-....+.|++++.... ..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence 5666666533 3689999999999999743 45555556677888887766 6799999999999998643332
Q ss_pred eEeeccccCcCCCCeEEEEEc---cCCCeEEEEEeCCCcEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFS---RDESQRIMITSEDSKLR 466 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~s---p~g~~~l~~~s~dg~I~ 466 (667)
....+ ..++++++. .+|...|++|=.+|.|-
T Consensus 76 --RiKSK-----~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 --RIKSK-----NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeccC-----CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22221 346666553 45556788888888774
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.87 Score=49.30 Aligned_cols=179 Identities=11% Similarity=0.137 Sum_probs=93.3
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee---CCCc-----EEEEEEeeCCCCEEEEEecC
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD---HHNY-----VTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~-----V~~l~f~p~d~~~l~sgs~D 371 (667)
+++..+.-..+.|.++.|..+..|+.-..||+++++|+.... ...+. .... +....+.. +|-.++ ..+
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvL--t~~ 146 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVL--TGN 146 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CCEEEE--CCC
Confidence 344444322378999999987788888999999999997433 11111 1112 22223332 342222 334
Q ss_pred CeEEEEecCCCe-EE-EecccCC---------ceEE-EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 372 GKVRIWGVCEKR-VV-DWADVRD---------VISA-ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 372 g~v~iwdl~~~~-~~-~~~~~~~---------~v~~-v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+.+.+..--... .. ....... .... ..++.+....+....++.+.+.+....+. ...
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-----------i~~ 215 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-----------IDS 215 (410)
T ss_pred CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----------ccC
Confidence 444444322211 11 1101000 0111 22344444444445555555443322100 111
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
.+++..++.||+| ++++.-..+|.+.|.+.. +....+... .......+.|.-+.
T Consensus 216 ~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCC
Confidence 3689999999996 788888899999998643 444444432 23455667776443
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.85 E-value=0.016 Score=66.39 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=89.9
Q ss_pred EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEee------CCCCEEEEEecCCeEEEEecCCC--eEEE----ecccCC
Q 005956 325 SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP------IDDNYFISGSIDGKVRIWGVCEK--RVVD----WADVRD 392 (667)
Q Consensus 325 s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p------~d~~~l~sgs~Dg~v~iwdl~~~--~~~~----~~~~~~ 392 (667)
.......|+-.|++.|+.+..+.....+.-..+.| .+...-+.|-.+..+..||.+-. +++. ......
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 33456789999999999999997444333334444 12344566777888999998863 3442 122345
Q ss_pred ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
..+|++-+.+| +||+|+.+|.||+||--+ ... .....+-+.+|++|..+.|| ++|++++. ..|.+++
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~A------KT~lp~lG~pI~~iDvt~DG-kwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRA------KTALPGLGDPIIGIDVTADG-KWILATCK-TYLLLID 645 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccc-hhh------hhcCCCCCCCeeEEEecCCC-cEEEEeec-ceEEEEE
Confidence 57888877777 899999999999999533 211 11122346899999999997 55555543 4555555
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.15 Score=49.68 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=97.1
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
...+++.|+..+.+.-.|..++.+....-....+.+-+.- -|++++.|+..|.+++.+.+++.........
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 4567888999999999999999987655555566554443 5778999999999999999988654432211
Q ss_pred CCe-EEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 441 NKI-TGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 441 ~~I-~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
..| ...+..+++ ..+.+++.|+..+..|..+....++..-..+...+-++.|-...|+.+...|.|.--+
T Consensus 93 ~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 93 ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence 112 223455664 7999999999999999988777777654555555556666334444444445443333
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0065 Score=65.68 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=74.7
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
-.|.-+.|+|.-.++|++..+|.|.+..+.- ..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----------------------------------------------qRl 54 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW----------------------------------------------QRL 54 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc----------------------------------------------cee
Confidence 4578899999999999999999998887652 224
Q ss_pred eeeeccccceE-EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE--eeCCCcEEEEEEee
Q 005956 303 QELHGHKGDVL-DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNP 359 (667)
Q Consensus 303 ~~l~gh~~~V~-~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~--~~h~~~V~~l~f~p 359 (667)
.++.-|...++ +++|.||| .|+.|-.||+|++.|++++..+.. +.....|.++.|.+
T Consensus 55 wtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 55 WTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 44444556666 99999999 899999999999999999988887 45677888888864
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.67 E-value=0.0035 Score=41.13 Aligned_cols=37 Identities=41% Similarity=0.733 Sum_probs=32.3
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQ 336 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd 336 (667)
.+...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456677899999999999987 999999999999996
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.12 Score=58.47 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=97.7
Q ss_pred cccceEEEEecCCC-eEEEEe------CCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-------
Q 005956 308 HKGDVLDLAWSNSN-YLLSCS------MDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------- 371 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s------~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D------- 371 (667)
....+.+.+.+|+| .++... .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEe
Confidence 33467889999999 444333 244 444445432 22 2222233478889999 87766666432
Q ss_pred -----CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEE---EEecCCcceee-eEeeccccCcCCCC
Q 005956 372 -----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHF---YKASGNDLKLE-KVDFHDRKKTSGNK 442 (667)
Q Consensus 372 -----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l---~d~~~~~~~~~-~~~~~~~~~~~~~~ 442 (667)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|.+ -....+..... ...+. ......
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVG---PGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence 233333444443332 3456799999999999998866 467766 33333332221 11111 111234
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEE--CCcceeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILD--GVDVIHKF-KGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
+..+.|.+++ . |+++..++...+|. +.-..... ........+.+++-+++ -|+.+..++
T Consensus 499 ~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 499 AVSLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cccceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 6889999986 4 44555555444554 32111111 11112445556665542 344444455
No 364
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.64 E-value=0.38 Score=53.46 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=92.6
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEeeCCCc------EE-EEEEeeCCCCEEEEEe---------cCCeEEEEecCCCeE
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY------VT-CVQFNPIDDNYFISGS---------IDGKVRIWGVCEKRV 384 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~------V~-~l~f~p~d~~~l~sgs---------~Dg~v~iwdl~~~~~ 384 (667)
+.++.++.++.|.-+|..+++.+..+..... +. ...+. +..++.++ .++.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6788888999999999999999988763332 11 12222 24455554 367899999999887
Q ss_pred EEecccC-C--------------------ce-EEEEEeeCCCEEEEEecCC------------------cEEEEEecCCc
Q 005956 385 VDWADVR-D--------------------VI-SAICYIPDGKGFIVGSITG------------------TCHFYKASGND 424 (667)
Q Consensus 385 ~~~~~~~-~--------------------~v-~~v~~spdg~~l~~gs~dg------------------~i~l~d~~~~~ 424 (667)
+-..... . .+ ...++.+.+..+++++.++ .+.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6422211 0 01 1345555667888887665 68888998887
Q ss_pred ceeee-Eeecccc--CcCCCC-eEEEEEccCCC--eEEEEEeCCCcEEEEECCcceeeEEe
Q 005956 425 LKLEK-VDFHDRK--KTSGNK-ITGIQFSRDES--QRIMITSEDSKLRILDGVDVIHKFKG 479 (667)
Q Consensus 425 ~~~~~-~~~~~~~--~~~~~~-I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~~~~~~ 479 (667)
..... ...+... .....+ +..+. .-+|. ..+++++.+|.+..+|..+.....+.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 76541 1111000 000011 11111 01221 36788889999999998876655543
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.64 E-value=0.027 Score=61.08 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=76.3
Q ss_pred cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
....+..+.++|+|+.+++ +.+|.-.+|......... .+.-..++|.+.+ .+++-...+.|.|+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~------------~G~g~~~vw~~~n--~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA------------FGSGLSFVWSSRN--RYAVLESSSTIKIYK 95 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE------------EEE-SEEEE-TSS--EEEEE-TTS-EEEEE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc------------cCceeEEEEecCc--cEEEEECCCeEEEEE
Confidence 3445889999999999998 668888888843322211 1345678898864 577777788999975
Q ss_pred CCccee--eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 470 GVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 470 ~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
-.+... .++. ...+..+-. |..|+..+.+ .|.+||++++.......... ...+.|+++|..+|+.....
T Consensus 96 n~~~~~~k~i~~---~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 96 NFKNEVVKSIKL---PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp TTEE-TT--------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S
T ss_pred cCccccceEEcC---CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe
Confidence 332222 3332 223444432 8888777654 89999999987655544332 46779999999999986554
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.01 Score=64.17 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred ccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3467889999988 99999999999999998 77777777 777777 999999 9999999999999999999998876
Q ss_pred Ee--cccCCceEEEEEee
Q 005956 386 DW--ADVRDVISAICYIP 401 (667)
Q Consensus 386 ~~--~~~~~~v~~v~~sp 401 (667)
.. ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 54 44556677777763
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.44 E-value=1.6 Score=47.30 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=103.1
Q ss_pred ceEEEEecCCC-eEE-EEeCCC----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC-----------e
Q 005956 311 DVLDLAWSNSN-YLL-SCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-----------K 373 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~-s~s~Dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg-----------~ 373 (667)
.+....++|++ +++ +-+..| +|+++|+.+++.+...-.......+.|.+ +++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcE
Confidence 34567889999 555 434444 59999999997765431222223499999 777766665433 3
Q ss_pred EEEEecCCCe----EEEecccCCc-eEEEEEeeCCCEEEEEecCC----cEEEEEecCC---cceeeeEeeccccCcCCC
Q 005956 374 VRIWGVCEKR----VVDWADVRDV-ISAICYIPDGKGFIVGSITG----TCHFYKASGN---DLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 374 v~iwdl~~~~----~~~~~~~~~~-v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~---~~~~~~~~~~~~~~~~~~ 441 (667)
|+.|.+.+.. ++.-...... ...+..++|++++++....+ .+.+.++... ......+.... .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-----~~ 278 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-----DG 278 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-----SS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-----Cc
Confidence 7888887653 2222222222 66788999999988755433 4666677654 22222222211 12
Q ss_pred CeEEEEEccCCCeEEEEEeC---CCcEEEEECCccee---eEEeCCCCC--CeEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 005956 442 KITGIQFSRDESQRIMITSE---DSKLRILDGVDVIH---KFKGLPKSG--SQMSASFTTTGKHIISI-GDDC--RVYVW 510 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~--~v~~v~~spdg~~l~sg-s~Dg--~I~iW 510 (667)
....+... . ..+++.+.. .+.|...++..... ......+.. .+..+.. .+.+|+.. -.++ .|+++
T Consensus 279 ~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 279 VEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp -EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 23334333 3 345555533 35666677664431 112222333 3444443 45555544 4444 68889
Q ss_pred EcC
Q 005956 511 NYD 513 (667)
Q Consensus 511 d~~ 513 (667)
++.
T Consensus 355 ~~~ 357 (414)
T PF02897_consen 355 DLD 357 (414)
T ss_dssp ETT
T ss_pred ECC
Confidence 988
No 368
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.41 E-value=0.35 Score=51.82 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=92.7
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
...++...++|++++.|.-| ++|.|.++|.+.|.|+...........
T Consensus 79 ~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i-------------------------------- 125 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENI-------------------------------- 125 (395)
T ss_dssp EEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEG--------------------------------
T ss_pred hhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccc--------------------------------
Confidence 34455679999999998555 999999999999999965322211000
Q ss_pred ccccCCcceeeeccccceEEEEec-----CCC----eEEEEeCCCcEEEEecC--C-CeE----eEEe-eCCCcEEEEE-
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWS-----NSN----YLLSCSMDKTVRMWQVG--C-NQC----LNVF-DHHNYVTCVQ- 356 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s-----~~~----~l~s~s~Dg~I~iWd~~--~-~~~----~~~~-~h~~~V~~l~- 356 (667)
.. ...-......|+++.|. .|+ .|+.|...|.+.+|.+. . +.. .... .+.+.|..+.
T Consensus 126 ---~~--~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~ 200 (395)
T PF08596_consen 126 ---RE--SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP 200 (395)
T ss_dssp ---GG----T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred ---cc--cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence 00 00001233457777775 233 78899999999999874 1 211 1122 3556666555
Q ss_pred EeeC--------------------CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEe-----eCCCEEEEEe
Q 005956 357 FNPI--------------------DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYI-----PDGKGFIVGS 410 (667)
Q Consensus 357 f~p~--------------------d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~s-----pdg~~l~~gs 410 (667)
|+.. -..+++. ..+..++++...+.+... ..........+++- ..+..|++-.
T Consensus 201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 201 INADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp EETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred EECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE
Confidence 3221 0123444 446789999988776554 22222233344552 3567888889
Q ss_pred cCCcEEEEEecCCccee
Q 005956 411 ITGTCHFYKASGNDLKL 427 (667)
Q Consensus 411 ~dg~i~l~d~~~~~~~~ 427 (667)
.+|.+++|.+..-+...
T Consensus 280 ~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp TTSEEEEEETTT--EEE
T ss_pred CCCcEEEEECCCchHhh
Confidence 99999999998765543
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.32 E-value=0.3 Score=55.18 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=79.1
Q ss_pred eEEEEecCCC-eEEEEeCC------------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE--
Q 005956 312 VLDLAWSNSN-YLLSCSMD------------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI-- 376 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~D------------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i-- 376 (667)
.+.-.|+|+| .|++.... +.+.+.+++.+.... .....|..+.|+| |+..++... ++.|++
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSR-DGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEE
Confidence 6777888886 55554322 233333444443332 3356799999999 999887765 577777
Q ss_pred -EecCCCeEE-----Eec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 377 -WGVCEKRVV-----DWA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 377 -wdl~~~~~~-----~~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
-....+... .+. .....+..+.|.+++. |+++..++.-.+|.+.-.......+ .. .....++..++-+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~--~~--~n~~~~v~~vaa~ 549 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDAL--PS--RNLSAPVVAVAAS 549 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcccccc--CC--CCccCceEEEecC
Confidence 443444411 111 2334468899999987 4566666555555544222111110 00 0012456666666
Q ss_pred cCCCeEEEEEeCCCcEEE
Q 005956 450 RDESQRIMITSEDSKLRI 467 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~i 467 (667)
++ .++++..++.+.+
T Consensus 550 ~~---~iyv~~~~g~~~l 564 (591)
T PRK13616 550 PS---TVYVTDARAVLQL 564 (591)
T ss_pred Cc---eEEEEcCCceEEe
Confidence 53 4555566664443
No 370
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.30 E-value=1.8 Score=46.10 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=77.1
Q ss_pred cCCC-eEEEEe--CC----CcEEEEecCCCeEeEEeeC----CCcEEEEEEeeCCCCEEEEEec----------------
Q 005956 318 SNSN-YLLSCS--MD----KTVRMWQVGCNQCLNVFDH----HNYVTCVQFNPIDDNYFISGSI---------------- 370 (667)
Q Consensus 318 s~~~-~l~s~s--~D----g~I~iWd~~~~~~~~~~~h----~~~V~~l~f~p~d~~~l~sgs~---------------- 370 (667)
-|+| .++|+- .+ |-+.+.|-++.+.+..... ...-+.+-|.| ..+.+++...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence 3566 666542 22 4577888888777776642 33566778888 7788887642
Q ss_pred ----CCeEEEEecCCCeEEEecccC---CceEEEEEeeC--CCEEEEEe-cCCcE-EEEEecCCcceee-eEeeccccC-
Q 005956 371 ----DGKVRIWGVCEKRVVDWADVR---DVISAICYIPD--GKGFIVGS-ITGTC-HFYKASGNDLKLE-KVDFHDRKK- 437 (667)
Q Consensus 371 ----Dg~v~iwdl~~~~~~~~~~~~---~~v~~v~~spd--g~~l~~gs-~dg~i-~l~d~~~~~~~~~-~~~~~~~~~- 437 (667)
..++.+||+.+.+.++..+.. ..+..+.|..+ ..+-++|+ ..++| ++|....+....+ .+.+...+.
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 358999999999988766554 34556666543 33333333 33444 4455466666555 333332211
Q ss_pred ------------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 438 ------------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 438 ------------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
....-|+.|..|.|+..+.+++=.+|.|+.||+.+
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 01355899999999855555556799999999874
No 371
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.89 Score=45.51 Aligned_cols=165 Identities=10% Similarity=0.177 Sum_probs=112.2
Q ss_pred eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
.|-...|.++.|+|+. .|++......-.||=...|+.++++. .-.....|.+.. ++++.++--.+..+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3455569999999998 88888888888888778899999886 223445667776 6777777777888888877654
Q ss_pred e-EE-------E--eccc-CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEee-ccc-cCcCCCCeEEEEE
Q 005956 383 R-VV-------D--WADV-RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF-HDR-KKTSGNKITGIQF 448 (667)
Q Consensus 383 ~-~~-------~--~~~~-~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~-~~~-~~~~~~~I~~l~~ 448 (667)
. ++ . ...+ +.....++|.|..+.|.++-...-+.||.......... .... +.. ..-.-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 11 1 1112 45677899999999999998888888888764332111 1100 000 0001245778899
Q ss_pred ccCCCeEEEEEeCCCcEEEEECC
Q 005956 449 SRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
.+....+++.+.+++.+.-.|..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC
Confidence 88766777788888888888765
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.15 E-value=1.5 Score=43.68 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=107.1
Q ss_pred ccEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 223 GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
.-...+.|..+|.++-+.|.-| .|+.+|+.++........+. ..|.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----------------------------~~Fg---- 92 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----------------------------RYFG---- 92 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----------------------------T--E----
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----------------------------cccc----
Confidence 3345688878888888888766 78889988765432211111 0000
Q ss_pred cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
.-+.-+.+.+..|.| .++...+||..+-+.+..+.....=+.++. +++.|+.......++++|..
T Consensus 93 --EGit~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 93 --EGITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp --EEEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSCEEEE-SSSEEEEE-TT
T ss_pred --eeEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCEEEEECCccceEEECCc
Confidence 001112334555554 457899999999999999987777788884 66777776667789999987
Q ss_pred CCeEEE---eccc---CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc---------cCcCCCCeEE
Q 005956 381 EKRVVD---WADV---RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---------KKTSGNKITG 445 (667)
Q Consensus 381 ~~~~~~---~~~~---~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---------~~~~~~~I~~ 445 (667)
+-+... .... -..++-+.|. +|...|=.=....|...|..++..... +.+.+- ......-.+.
T Consensus 158 ~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~-iDls~L~~~~~~~~~~~~~~dVLNG 235 (264)
T PF05096_consen 158 TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW-IDLSGLRPEVGRDKSRQPDDDVLNG 235 (264)
T ss_dssp T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE-EE-HHHHHHHTSTTST--TTS-EEE
T ss_pred ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE-EEhhHhhhcccccccccccCCeeEe
Confidence 765443 2211 2235666664 565444444556677777777665432 222111 1112356899
Q ss_pred EEEccCCCeEEEEE
Q 005956 446 IQFSRDESQRIMIT 459 (667)
Q Consensus 446 l~~sp~g~~~l~~~ 459 (667)
|++.|....++++|
T Consensus 236 IAyd~~~~~l~vTG 249 (264)
T PF05096_consen 236 IAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EeEeCCCCEEEEEe
Confidence 99999875555555
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.0077 Score=57.48 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=78.4
Q ss_pred EEEEecCCeEEEEecCCCeEEE-ecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 365 FISGSIDGKVRIWGVCEKRVVD-WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~-~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+..-+.|+.|+-++++..+... ... +... .. .-.-+..+++|+.+|.|.+|.............. ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-ee--ecccCceEEeecccceEEEecCCccchHHHhhhc------cccc
Confidence 4445667888888776544321 111 1111 11 1123568999999999999988733222111110 1123
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEeCCCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKGLPKS-GSQMSASFTTTGKHIISI--GDDCRVYVWNYDEL 515 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~-~~v~~v~~spdg~~l~sg--s~Dg~I~iWd~~~~ 515 (667)
|-++.-.-+.+.+..++..+|.|+.|+..... .-+.++ |. .++.....+..+++|+.+ |.|..++.|++...
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 33332222223588999999999999976322 223333 33 455555555566666666 66777777776543
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.97 E-value=0.44 Score=53.86 Aligned_cols=195 Identities=16% Similarity=0.170 Sum_probs=103.4
Q ss_pred eEEEEecCCCeEEEEeCC------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-----EEEEecC
Q 005956 312 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-----VRIWGVC 380 (667)
Q Consensus 312 V~~l~~s~~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-----v~iwdl~ 380 (667)
-.+++...+...++||.| .++..||..+++-...-.-...-..+.....++.+.++|+.||. |-.||..
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 344555554478888888 35778888877644322211111111111127889999999864 7778887
Q ss_pred CCeEEEecccCCceEEEEE-eeCCCEEEEEecCC------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 381 EKRVVDWADVRDVISAICY-IPDGKGFIVGSITG------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 381 ~~~~~~~~~~~~~v~~v~~-spdg~~l~~gs~dg------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
+.+-............... .-+|...++|+.++ ++..||..++...... .+... ..-..++... .
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~-~M~~~-----R~~~g~a~~~--~ 476 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA-PMNTR-----RSGFGVAVLN--G 476 (571)
T ss_pred CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC-Ccccc-----cccceEEEEC--C
Confidence 7765443333222222222 23788888888665 5678888887765431 11111 1112233333 3
Q ss_pred eEEEEEeCCC-----cEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005956 454 QRIMITSEDS-----KLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 515 (667)
Q Consensus 454 ~~l~~~s~dg-----~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~ 515 (667)
.++++|+.|+ +|..||.....-.... .........++ .-+++..++|+.|| +|..||..+.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence 6788888776 3667776532211111 11111111122 23566777777765 4555654443
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.094 Score=55.92 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=92.6
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCC-------EEEEEecCCeEEEEecCCCe--EEEec----
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDN-------YFISGSIDGKVRIWGVCEKR--VVDWA---- 388 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~-------~l~sgs~Dg~v~iwdl~~~~--~~~~~---- 388 (667)
.|.++..-..|+-.|++.|+.+........|.-+.+.| +.+ .-+.|-.|..|.-||.+-.. .+.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 55667777789999999999999998666688888887 432 23446667889999987432 22222
Q ss_pred -ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 389 -DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 389 -~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
.......|++-..+| +|++|+.+|.|++||-- +...... ...-+.+|+.+..+.+| .+|++++ +..+.+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA------lPgLG~~I~hVdvtadG-Kwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA------LPGLGDAIKHVDVTADG-KWILATC-KTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc------ccccCCceeeEEeeccC-cEEEEec-ccEEEE
Confidence 223345666666665 89999999999999973 3222222 22335889999999997 5555444 445555
Q ss_pred EE
Q 005956 468 LD 469 (667)
Q Consensus 468 wd 469 (667)
.+
T Consensus 497 i~ 498 (644)
T KOG2395|consen 497 ID 498 (644)
T ss_pred EE
Confidence 54
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.94 E-value=3.8 Score=45.93 Aligned_cols=77 Identities=8% Similarity=-0.098 Sum_probs=43.7
Q ss_pred cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCcEEEE
Q 005956 464 KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~~lav 541 (667)
.|.-+|+.+.....+.........+. +.-.+..++.++.||.++.+|.++++........ ...+-+.|..+|+..++
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence 45556665554444332111111111 1224557777888999999999999987654333 23334566677764433
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.79 E-value=2.6 Score=44.40 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=104.7
Q ss_pred EEecCCC--eEEEEeCCC--cEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956 315 LAWSNSN--YLLSCSMDK--TVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 315 l~~s~~~--~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~ 389 (667)
=+|.++| +|+.+..|| .+.+.|+.+++..+..... .......++| +++.++.......|+-.|+.+.+...+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3567788 555565566 4666688999888877543 2222456677 66777666666789999999987654333
Q ss_pred c-CCceEEEEEee--CCCEEEEEec---C-------------------CcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 390 V-RDVISAICYIP--DGKGFIVGSI---T-------------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 390 ~-~~~v~~v~~sp--dg~~l~~gs~---d-------------------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
. ...+-...|.. |+..++-.-. + ..|.-.|+.+++... + +.. ...+.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~--v-~~~-----~~wlg 191 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV--V-FED-----TDWLG 191 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE--E-EEE-----SS-EE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE--E-Eec-----Ccccc
Confidence 3 33333455543 4554432211 1 123333444443321 1 111 26788
Q ss_pred EEEEccCCCeEEEEEeCC------CcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEc
Q 005956 445 GIQFSRDESQRIMITSED------SKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-----DDCRVYVWNY 512 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~d------g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-----~Dg~I~iWd~ 512 (667)
-++|+|.++..|+-+-+. ..|.+.+.. ..............+..=-|.|||..|.--+ .+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 899999877777776542 244444433 1122222222334455556899998776432 3456777888
Q ss_pred CCCCccccccccCccceeEEccCCcEEEEec
Q 005956 513 DELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
.+++....... .......-++||..++---
T Consensus 272 ~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 272 DTGERRRLMEM-PWCSHFMSSPDGKLFVGDG 301 (386)
T ss_dssp TT--EEEEEEE--SEEEEEE-TTSSEEEEEE
T ss_pred CCCCceEEEeC-CceeeeEEcCCCCEEEecC
Confidence 88765432221 1223344567888776643
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.74 E-value=3 Score=43.16 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=85.6
Q ss_pred eEEEEeCCCcEEEEecC-CCeEeEEe----e-CCCcEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE---ecc--
Q 005956 322 YLLSCSMDKTVRMWQVG-CNQCLNVF----D-HHNYVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---WAD-- 389 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~-~~~~~~~~----~-h~~~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~~~-- 389 (667)
.+.+-+.||++.-..+. .|+..... . ..+++. .-++.. .+..++.-+.+|.|+-.|+....... +.-
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 57788888988888886 45544322 1 122222 334444 55566667899999999988765432 110
Q ss_pred --------cCCceEEEEEeeCCCEEEEEecCC----------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 390 --------VRDVISAICYIPDGKGFIVGSITG----------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 390 --------~~~~v~~v~~spdg~~l~~gs~dg----------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
..+.-.-+++++..+.|.+.-..| .|-+||+.+.+... .+.+. .++.+|+.+.+
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~l~-------~~~~Si~Vsqd 299 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIPLE-------HPIDSIAVSQD 299 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEEEE-------EEESEEEEESS
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEeCC-------CccceEEEccC
Confidence 012345577877666666543322 46677777666543 33332 35779999998
Q ss_pred CCeEEEEEe-CCCcEEEEECCcc
Q 005956 452 ESQRIMITS-EDSKLRILDGVDV 473 (667)
Q Consensus 452 g~~~l~~~s-~dg~I~iwd~~~~ 473 (667)
...+|++.+ .++.|.+||..+.
T Consensus 300 ~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 300 DKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp SS-EEEEEETTTTEEEEEETTT-
T ss_pred CCcEEEEEcCCCCeEEEEeCcCC
Confidence 766776654 5789999998754
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.46 Score=47.11 Aligned_cols=184 Identities=12% Similarity=0.196 Sum_probs=104.2
Q ss_pred EEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 229 KFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 229 ~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.|||||.+|...-. -|.|-|||.... ...+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--------------------------------------------fqrvg 155 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--------------------------------------------FQRVG 155 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--------------------------------------------cceec
Confidence 59999999887643 378899988752 23355
Q ss_pred eeeccccceEEEEecCCC-eEEEEeC------------------CCcEEEEecCCCeEeEEee-----CCCcEEEEEEee
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSM------------------DKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP 359 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~------------------Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p 359 (667)
++..|.-.-..+.|.+|| .++.+.. .-++.+.|..++..+.... +...|..++..+
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 666777677778888888 3333221 1233444444554443321 344677777776
Q ss_pred CCCCEEEEEecCCe-----EEEEecCCCeEEEec--------ccCCceEEEEEeeCCCEEEEEecCCc-EEEEEecCCcc
Q 005956 360 IDDNYFISGSIDGK-----VRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGT-CHFYKASGNDL 425 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~-----v~iwdl~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~gs~dg~-i~l~d~~~~~~ 425 (667)
++..++.+-..|. -.+=-...++.+... .....|-+++.+.+..+++..+-.|+ ..+||..++..
T Consensus 236 -dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 236 -DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred -CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 6665555443321 001111122222211 22345778888876667777666554 56899999877
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
..... + .....+.-... -+++++.+|.+.++.
T Consensus 315 v~~a~-l--------~daaGva~~~~---gf~vssg~G~~~~~s 346 (366)
T COG3490 315 VSEAA-L--------PDAAGVAAAKG---GFAVSSGQGRIIFYS 346 (366)
T ss_pred Eeccc-c--------cccccceeccC---ceEEecCCceEEecc
Confidence 54310 1 11233333333 366677778887764
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.65 E-value=2.3 Score=43.13 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=85.4
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE--------------
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-------------- 386 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-------------- 386 (667)
..|+.|+.+| |.++++..........+...|..+...| +-+.+++-+ |+.++++++..-....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 3888898888 9999994333333333444499999999 666666654 5999999987644332
Q ss_pred -ecccCCceEEEE--EeeCCCEEEEEecCCcEEEEEecCCcc----eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 387 -WADVRDVISAIC--YIPDGKGFIVGSITGTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 387 -~~~~~~~v~~v~--~spdg~~l~~gs~dg~i~l~d~~~~~~----~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.......+..++ -...+...++......|.+|....... ....+.+. ..+..++|.++ .++.+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~~~---~i~v~ 154 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFLGN---KICVG 154 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEeCC---EEEEE
Confidence 112223344444 123444455555566999999876422 22233332 67899999954 56666
Q ss_pred eCCCcEEEEECC
Q 005956 460 SEDSKLRILDGV 471 (667)
Q Consensus 460 s~dg~I~iwd~~ 471 (667)
..+ ...+.|+.
T Consensus 155 ~~~-~f~~idl~ 165 (275)
T PF00780_consen 155 TSK-GFYLIDLN 165 (275)
T ss_pred eCC-ceEEEecC
Confidence 544 47778876
No 381
>PHA02713 hypothetical protein; Provisional
Probab=95.63 E-value=0.41 Score=54.10 Aligned_cols=183 Identities=9% Similarity=0.082 Sum_probs=91.6
Q ss_pred eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCCeEEEec
Q 005956 322 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWA 388 (667)
Q Consensus 322 ~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~~~~~~~ 388 (667)
.++.||.+ .++..||..++.-...-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-....
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 66666653 347788887765432211 11111122222 678888888764 4888998887654433
Q ss_pred ccCCceEE-EEEeeCCCEEEEEecCC-----------------------cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 389 DVRDVISA-ICYIPDGKGFIVGSITG-----------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 389 ~~~~~v~~-v~~spdg~~l~~gs~dg-----------------------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
........ ....-+|+..++|+.++ .+..||..++...... .+... ... .
T Consensus 384 ~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~----r~~-~ 457 (557)
T PHA02713 384 DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTG----TIR-P 457 (557)
T ss_pred CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcc----ccc-C
Confidence 32221111 11123678888887653 4677888776654221 11100 011 1
Q ss_pred EEEEccCCCeEEEEEeCC------CcEEEEECCc-c-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC
Q 005956 445 GIQFSRDESQRIMITSED------SKLRILDGVD-V-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC--RVYVWNYDE 514 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~d------g~I~iwd~~~-~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg--~I~iWd~~~ 514 (667)
+++.. +| .+.++|+.+ ..+..||..+ . -..............++. -+|+..++||.|+ .+..||..+
T Consensus 458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccc
Confidence 22222 22 566667654 2466788664 2 111111111111112222 3678888888887 566666655
Q ss_pred C
Q 005956 515 L 515 (667)
Q Consensus 515 ~ 515 (667)
.
T Consensus 535 ~ 535 (557)
T PHA02713 535 Y 535 (557)
T ss_pred c
Confidence 4
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.54 E-value=6.5 Score=45.66 Aligned_cols=271 Identities=13% Similarity=0.097 Sum_probs=140.0
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..|.-..|--|..||.++..||.+.-+.+..... .++.......+...-.++-+...... .++....+|.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg---~lsd~Kk~~lGt~P~~Lr~f~sk~~t-------~vfa~sdrP~ 653 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTG---QLSDRKKVTLGTQPISLRTFSSKSRT-------AVFALSDRPT 653 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccc---eEccccccccCCCCcEEEEEeeCCce-------EEEEeCCCCE
Confidence 4566666666788999999999988776553211 11111111111222222222211111 1222222332
Q ss_pred eeeeccc---------cceEE-EEecCCC---eEEEEeCCCcEEEEecCCCeE--eEEeeCCCcEEEEEEeeCCCCEEEE
Q 005956 303 QELHGHK---------GDVLD-LAWSNSN---YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 303 ~~l~gh~---------~~V~~-l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~d~~~l~s 367 (667)
..+.... ..+.. +.|+.+. .|+++.. +.+++..++.-+. +++.........+++.+ ....+.+
T Consensus 654 viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v 731 (1096)
T KOG1897|consen 654 VIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGV 731 (1096)
T ss_pred EEEecCCcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecc-cceEEEE
Confidence 2221110 11111 2233332 3444443 5677776654332 23344445556666665 3333333
Q ss_pred EecC--------------CeEEEEecCCCeEEEeccc--CC---ceEEEEEeeC-CCEEEEEec----------CCcEEE
Q 005956 368 GSID--------------GKVRIWGVCEKRVVDWADV--RD---VISAICYIPD-GKGFIVGSI----------TGTCHF 417 (667)
Q Consensus 368 gs~D--------------g~v~iwdl~~~~~~~~~~~--~~---~v~~v~~spd-g~~l~~gs~----------dg~i~l 417 (667)
.+.. ..++++|-.+-++...... .. .+.++.|..| +.++++|+. .|.|.+
T Consensus 732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIiv 811 (1096)
T KOG1897|consen 732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIV 811 (1096)
T ss_pred EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEE
Confidence 3221 2477788777776643322 22 2444558777 778888874 588899
Q ss_pred EEecC-Ccceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956 418 YKASG-NDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 418 ~d~~~-~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
|.... +++... .... .+.+.++..-. | ++++ +-+..|++|+..+....-..-.+..++..+...-.|
T Consensus 812 fe~~e~~~L~~v~e~~v-------~Gav~aL~~fn-g-kllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g 880 (1096)
T KOG1897|consen 812 FEFEELNSLELVAETVV-------KGAVYALVEFN-G-KLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKG 880 (1096)
T ss_pred EEEecCCceeeeeeeee-------ccceeehhhhC-C-eEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecC
Confidence 98877 333222 1111 24455544332 2 3443 445679999876442222222366778888888999
Q ss_pred CEEEEEeCCCcEEEEEcCCCC
Q 005956 496 KHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 496 ~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
..|+.|.--+.|.+-.+...+
T Consensus 881 deI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 881 DEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cEEEEeeccceEEEEEEeccC
Confidence 999999888877776665544
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.41 E-value=1.6 Score=49.41 Aligned_cols=184 Identities=14% Similarity=0.144 Sum_probs=101.9
Q ss_pred eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEe
Q 005956 322 YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDW 387 (667)
Q Consensus 322 ~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~ 387 (667)
.++.||.+ ..+..+|..++.-..... ....-.+++.. ++.++++|+.| .++..||..+++-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 56666666 368888888775444332 33345556665 47888999988 3578899988875443
Q ss_pred cccCCceEEEEE-eeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 388 ADVRDVISAICY-IPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 388 ~~~~~~v~~v~~-spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
......-..+.. .-+|...++|+.|| ++..||..+++........ ....+.....-++.+.++|+.
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------TRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC--------cceeeeEEEEECCEEEEEcCc
Confidence 332222122222 23788899999987 4778888877664331000 111222221212467777775
Q ss_pred CC------cEEEEECCcceeeEEeCCCCC-CeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCC
Q 005956 462 DS------KLRILDGVDVIHKFKGLPKSG-SQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC 516 (667)
Q Consensus 462 dg------~I~iwd~~~~~~~~~~~~~~~-~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~~ 516 (667)
++ .+..||..+..-......... .-..++ .-++...+.||.|+ +|..||..+.+
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 54 466777553221111100111 111122 23677777888776 37778877654
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.37 E-value=4 Score=42.17 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=119.8
Q ss_pred EecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-EEecc---
Q 005956 316 AWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD--- 389 (667)
Q Consensus 316 ~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~~~~~--- 389 (667)
.|.++. ++.+--..+.|.-|+..+++. ..+.+...+.++.... .+..|+++. .-+++++...+.. ..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 456655 444555677888888875543 3444455555555544 444555543 3467777765554 22111
Q ss_pred --cCCceEEEEEeeCCCEEEEEec-----C----CcEEEEEec-CCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 390 --VRDVISAICYIPDGKGFIVGSI-----T----GTCHFYKAS-GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 390 --~~~~v~~v~~spdg~~l~~gs~-----d----g~i~l~d~~-~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
.....+.+...|+|.+.+.... . ..-.+|-+. .+........ +-..-++|+|+||+..+++
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-------~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-------DLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-------cEEecCceEECCCCCEEEE
Confidence 1244677888899876665333 0 111344444 2222111100 0133468999999865666
Q ss_pred EEeCCCcEEEEECCc-------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCcccccccc-Cccc
Q 005956 458 ITSEDSKLRILDGVD-------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSKQKN-SVRS 528 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-~I~iWd~~~~~~~~~~~~~-~~~~ 528 (667)
+=+..+.|+-|+... ....+......+..-.++...+|.+-+++..+| .|.+|+.+ ++........ ...+
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 666678888887641 111111111345566778888888776555444 89999988 5543332222 4444
Q ss_pred eeEEc-cCCcEEEEecCCC
Q 005956 529 CEHFF-SEGVSVAVQWPGI 546 (667)
Q Consensus 529 ~~~fs-~dg~~lav~w~~~ 546 (667)
+++|- ++...|-+.....
T Consensus 259 ~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 259 NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cceEeCCCcCEEEEEecCC
Confidence 55554 4455555544433
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.19 E-value=3.8 Score=40.91 Aligned_cols=185 Identities=8% Similarity=0.064 Sum_probs=107.0
Q ss_pred cceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
.-...+.|..++ ++-+.+.-| .|+.+|+.+++.+....... .--.+... ++.++...-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 456678886677 666777766 79999999999887775333 33344554 455666667789999999998887
Q ss_pred EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 385 VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 385 ~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+......+.=..++ .||+.|+.......++++|..+.+.... .+...+ ..-..++-+.|.. | ...+-.=...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g---~pv~~LNELE~i~-G-~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG---RPVSNLNELEYIN-G-KIYANVWQTD 195 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---EE---EEEEEEET-T-EEEEEETTSS
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC---EECCCcEeEEEEc-C-EEEEEeCCCC
Confidence 76555555555566 6788888887788999999887665443 222222 1123456666653 2 3333333334
Q ss_pred cEEEEECCcc-----------eeeEEe----CCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 464 KLRILDGVDV-----------IHKFKG----LPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 464 ~I~iwd~~~~-----------~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
.|...|..+. ...... .......+.+++.|..+.|...|.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4444554322 111100 112456789999887766655553
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.19 E-value=5.6 Score=42.84 Aligned_cols=180 Identities=11% Similarity=0.155 Sum_probs=95.4
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC--------------------
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------- 381 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------------------- 381 (667)
++..=+.||++.+++-+.-...+.+..---...+.|.+ ..+.|++++.+..+..|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78888999999999987665555554322334567888 777888888888888885421
Q ss_pred CeEE--E-ecccCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE------c
Q 005956 382 KRVV--D-WADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF------S 449 (667)
Q Consensus 382 ~~~~--~-~~~~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~------s 449 (667)
++.+ . .......+..+..-. ....+++-+. .++.+.+..+ .+.. ...+.. .+.....| .
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~G-~l~~-~krLd~------~p~~~~~Y~~~~~~~ 296 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDNG-SLRF-QKRLDY------NPSCFCPYRVPWYNE 296 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcCCC-eEEE-EEecCC------ceeeEEEEEeecccC
Confidence 1111 0 122333444444333 2223333332 2444444432 2211 222211 11222222 2
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSAS---FTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~---~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
++....+++++.++.+.||.-.+.+-..+. ...+| ++. |..-...|++-+.+|.+.+-=+.+
T Consensus 297 ~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 297 PSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 222235889999999999975544333222 22222 333 222345677778888877665544
No 387
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.18 E-value=3.6 Score=41.65 Aligned_cols=204 Identities=12% Similarity=0.123 Sum_probs=114.3
Q ss_pred ceEEEEecCCC-eEEEEeCCCcEEEEecC------CCeE-eEEee------CCCcEEEEEEeeCCCC------------E
Q 005956 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVG------CNQC-LNVFD------HHNYVTCVQFNPIDDN------------Y 364 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~------~~~~-~~~~~------h~~~V~~l~f~p~d~~------------~ 364 (667)
.-+.|+++|.+ .-++....++..+||.. ..+. +..+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 45789999988 66777777899999986 2222 22222 234688888885 222 3
Q ss_pred EEEEecCCeEEEEecCCC------eEEEeccc-CCc-eEEEEEeeC--CCEEEE-EecCCcEEEEEecCCcceeeeEeec
Q 005956 365 FISGSIDGKVRIWGVCEK------RVVDWADV-RDV-ISAICYIPD--GKGFIV-GSITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~------~~~~~~~~-~~~-v~~v~~spd--g~~l~~-gs~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
|+.++.||+|.-|...-. ..+..... ... ...+++-.. +.+|.. --..++|.+||-.=...... -.+.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCcc
Confidence 678889999999974322 11222111 222 334555433 444444 34678899988653322211 0011
Q ss_pred cccCcCCCCeEEEEEc------------cCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcC------C
Q 005956 434 DRKKTSGNKITGIQFS------------RDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTT------T 494 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~s------------p~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp------d 494 (667)
.........-..|+-- ++. ..=+.+..-|.|-+||.. +.++++.....-...+.++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 1000001111112111 111 112222334689999976 6667676544555566676644 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 005956 495 GKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 495 g~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
|.+|+---.||+|..+|..++..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CCeEEeecCCceeEEecCCCCce
Confidence 66777666799999999987764
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=4.1 Score=40.92 Aligned_cols=165 Identities=12% Similarity=0.146 Sum_probs=100.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+.+-+..|.++.|+|+.+.|++......-.||=..+++....
T Consensus 78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt----------------------------------- 122 (316)
T COG3204 78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT----------------------------------- 122 (316)
T ss_pred ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-----------------------------------
Confidence 344556667799999999999999888777666664443322111
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE----------EeeC-CCcEEEEEEeeCCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----------VFDH-HNYVTCVQFNPIDD 362 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~----------~~~h-~~~V~~l~f~p~d~ 362 (667)
..+.+ -...-.|.|..+| +.++-=.+..+.++.+.....+. ...+ +.....++|.| .+
T Consensus 123 --------iPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~ 192 (316)
T COG3204 123 --------IPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VD 192 (316)
T ss_pred --------ecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CC
Confidence 01111 1233456666666 55555667777777665442111 1123 55778999999 66
Q ss_pred CEEEEEecCCeEEEEecCCCe-EE--E-eccc-------CCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCc
Q 005956 363 NYFISGSIDGKVRIWGVCEKR-VV--D-WADV-------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~-~~--~-~~~~-------~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~ 424 (667)
..|+.+-...-+.||.+.... .. . ...+ -..|..+.|++. +..++.+..++.+.-.|....-
T Consensus 193 ~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 193 HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 777777777777887765433 11 1 1111 134777888874 5556666677777777776543
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.08 E-value=4 Score=41.01 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=92.2
Q ss_pred cEEEEEEeeCCCCEEEEEe---cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEE-ecCCcce
Q 005956 351 YVTCVQFNPIDDNYFISGS---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYK-ASGNDLK 426 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs---~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d-~~~~~~~ 426 (667)
.+...++++ +++.++... ....++++.......... ....+....|++++...++...+...+++. .......
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999 787766655 333455554433222222 334788889999987777766666666664 3333333
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECC---cc-e----eeEE-eCCCCCCeEEEEEcCCC
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGV---DV-I----HKFK-GLPKSGSQMSASFTTTG 495 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~dg~I~iwd~~---~~-~----~~~~-~~~~~~~v~~v~~spdg 495 (667)
...+..... ...|+.+.++|||.+..++.. .++.|.|--+. .. . .... .......+..++|.+++
T Consensus 102 ~~~v~~~~~----~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGL----RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEeccccc----CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 223332221 128999999999866555553 34666665321 11 1 1111 11235678999999999
Q ss_pred CEEEEEeCCC-cEEE-EEcCCC
Q 005956 496 KHIISIGDDC-RVYV-WNYDEL 515 (667)
Q Consensus 496 ~~l~sgs~Dg-~I~i-Wd~~~~ 515 (667)
.+++.+...+ .+.. ......
T Consensus 178 ~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred EEEEEeCCCCCceeEEEEccCC
Confidence 8877766543 3443 445444
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.37 Score=56.03 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=89.7
Q ss_pred ceEEEEecCCC---eEEEEeCCCcEEEEecCCCe--------EeEEe----eCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 311 DVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQ--------CLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 311 ~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~--------~~~~~----~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
.|..+...+|+ .++..+.+-.|..||+.+-. +++.. .......++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34444445555 34445555678899986432 11111 13345678899996566677788899999
Q ss_pred EEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 376 IWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 376 iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+..+.... .+.........++++|+|.|+.+++|-..|++.-|....... . .++.........|.+++|...
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~---~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-S---EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-e---cccCCCcCCCcceeEEEEecc
Confidence 88775433 233446677799999999999999999999999987653211 1 112212222578999999876
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.91 E-value=6.4 Score=46.00 Aligned_cols=200 Identities=11% Similarity=0.078 Sum_probs=112.6
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcE---------EEEEEee---------------CCCCEEEEEecCCeEE
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYV---------TCVQFNP---------------IDDNYFISGSIDGKVR 375 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V---------~~l~f~p---------------~d~~~l~sgs~Dg~v~ 375 (667)
++.|+.++.++.|.-.|..+|+.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457888888899999999999998887533221 1233321 1345788899999999
Q ss_pred EEecCCCeEEEecccCCceE-------------EEEEee--CCCEEEEEec----------CCcEEEEEecCCcceeeeE
Q 005956 376 IWGVCEKRVVDWADVRDVIS-------------AICYIP--DGKGFIVGSI----------TGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~-------------~v~~sp--dg~~l~~gs~----------dg~i~l~d~~~~~~~~~~~ 430 (667)
-.|..+++.+......+.+. .+.-.| .+..+++|+. +|.|+-||++++++....-
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998875333322221 111112 2346677653 6889999999998765422
Q ss_pred eeccccC-----------cCCCCeEEEEEccCCCeEEEEEeC------------------CCcEEEEECCcceeeEEeC-
Q 005956 431 DFHDRKK-----------TSGNKITGIQFSRDESQRIMITSE------------------DSKLRILDGVDVIHKFKGL- 480 (667)
Q Consensus 431 ~~~~~~~-----------~~~~~I~~l~~sp~g~~~l~~~s~------------------dg~I~iwd~~~~~~~~~~~- 480 (667)
....... .....-..+++.+.. ..++.... .+.|.-.|..+...+...+
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 1100000 000111234444442 23333221 2234444544433333221
Q ss_pred -CCC-------CCeEEEEEcC-CCC---EEEEEeCCCcEEEEEcCCCCcccc
Q 005956 481 -PKS-------GSQMSASFTT-TGK---HIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 481 -~~~-------~~v~~v~~sp-dg~---~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
.|. ....-+.+.. +|+ .|+.++.+|.+++.|.++++....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 121 1112223333 563 789999999999999999986544
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.71 E-value=5.2 Score=44.88 Aligned_cols=195 Identities=16% Similarity=0.144 Sum_probs=111.1
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEE---E-------EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT---C-------VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~---~-------l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~ 387 (667)
++.++.++.++.|.-.|..+++.+..+.... .+. + +++ .+..++.++.|+.|.-+|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4677888888899999999999888875322 111 1 222 235677888899999999999998743
Q ss_pred cccCCc--eEEEEEee--CCCEEEEEec------CCcEEEEEecCCcceeeeEeecccc---------------------
Q 005956 388 ADVRDV--ISAICYIP--DGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRK--------------------- 436 (667)
Q Consensus 388 ~~~~~~--v~~v~~sp--dg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~--------------------- 436 (667)
...... -..+.-+| .+..++++.. +|.|.-+|..+++............
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 322110 00111112 1235555543 6899999999887765422211100
Q ss_pred ---CcCCCCe-EEEEEccCCCeEEEEEeCC-----C-----------cEEEEECCccee--eEEeCCCC-------CCeE
Q 005956 437 ---KTSGNKI-TGIQFSRDESQRIMITSED-----S-----------KLRILDGVDVIH--KFKGLPKS-------GSQM 487 (667)
Q Consensus 437 ---~~~~~~I-~~l~~sp~g~~~l~~~s~d-----g-----------~I~iwd~~~~~~--~~~~~~~~-------~~v~ 487 (667)
......+ ..+.+.|.. .+++.+..+ + .|.-.|+.+... .|+...|. ....
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0001111 234566543 344444322 2 344445554333 23332221 1222
Q ss_pred EEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 005956 488 SASFTTTGK---HIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 488 ~v~~spdg~---~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
-+.+..+|+ .|+.+..+|.+++.|..+++..
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 233445776 7889999999999999998763
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.25 Score=57.41 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=92.3
Q ss_pred ceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceee--eEeecccc--CcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956 393 VISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLE--KVDFHDRK--KTSGNKITGIQFSRDESQRIMITSEDSKLR 466 (667)
Q Consensus 393 ~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~--~~~~~~~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~ 466 (667)
.+..+...+|+...++... +-.|..||++....... ...+..+. ........++.|.|.=....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3555666677766655443 33788999986544321 11111111 112345567889887555677888899999
Q ss_pred EEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc----cccCccceeEEccCCcEEEEe
Q 005956 467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~ 542 (667)
+..+...........-...+++++|+|.|+.++.|-..|++.-|...-....... .....+.++.|-..-.++++-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 9887644443333445678899999999999999999999999876543221111 112333445555555555553
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.6 Score=54.11 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=70.6
Q ss_pred eEEEEeCCCcEEEEecCCCeE--eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe-cccCCc---eE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQC--LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-ADVRDV---IS 395 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-~~~~~~---v~ 395 (667)
.++.|+..|.|...|+...-+ .+--....+|++++|+. ++..++.|-.+|.|.+||+..+++.+. ..+..+ +-
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 678888888898888876422 12223567999999999 999999999999999999999887753 333333 33
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEEec
Q 005956 396 AICYIPDGKGFIVGSITGTCHFYKAS 421 (667)
Q Consensus 396 ~v~~spdg~~l~~gs~dg~i~l~d~~ 421 (667)
.+.+..++..++++...|. +|.+.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4445556667888777776 56554
No 395
>PHA03098 kelch-like protein; Provisional
Probab=94.61 E-value=1.5 Score=49.41 Aligned_cols=102 Identities=14% Similarity=0.191 Sum_probs=56.1
Q ss_pred eEEEEeCCC------cEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEe
Q 005956 322 YLLSCSMDK------TVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDW 387 (667)
Q Consensus 322 ~l~s~s~Dg------~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~ 387 (667)
.++.||.++ .+..||..+++....-. .......+.+ ++.+++.|+.+ ..+..||..+++-...
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 556666542 57788887776533222 1111222222 67788888865 3477888887765443
Q ss_pred cccCCce-EEEEEeeCCCEEEEEecC------CcEEEEEecCCcce
Q 005956 388 ADVRDVI-SAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK 426 (667)
Q Consensus 388 ~~~~~~v-~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~ 426 (667)
.....+. ...+..-+++.++.|+.+ ..+..||..++...
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 2221111 111122466777777732 35788998876554
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.58 E-value=2 Score=47.03 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=75.6
Q ss_pred ccccceEEEEecCCC-----eEEEEeCCCcEEEEecC-----CCeEeEEe--e--CCCc--EEEEEEeeCCCCEEEEEec
Q 005956 307 GHKGDVLDLAWSNSN-----YLLSCSMDKTVRMWQVG-----CNQCLNVF--D--HHNY--VTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-----~l~s~s~Dg~I~iWd~~-----~~~~~~~~--~--h~~~--V~~l~f~p~d~~~l~sgs~ 370 (667)
|.-..|..+.|.|-+ .|++....+.|.||.+. .++.+... . ..-+ -..+.|+| ....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344569999999842 68888888999999985 22322221 1 1222 34678999 6777766665
Q ss_pred CCeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecC-CcEEEEEecC
Q 005956 371 DGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSIT-GTCHFYKASG 422 (667)
Q Consensus 371 Dg~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~ 422 (667)
...-.+++++. .++..-....+.|.|.||.+||+.|+++-.. =.-++||-..
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 55555666654 3343344677889999999999998876543 2446777543
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.49 E-value=7.4 Score=40.82 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCeEEEEEccCC------CeEEEEEeCCCcEEEEECCcc---eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956 441 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV---IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVY 508 (667)
Q Consensus 441 ~~I~~l~~sp~g------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~ 508 (667)
..++.+.|.... +.++++.-..+.|....+... ....... .....+..+++.|||.+.++.+.+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 456677775431 245555555567777665421 1112212 2344789999999999988888888875
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.43 E-value=0.13 Score=36.74 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.4
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~ 252 (667)
...|.+++|+|...+||.|..||.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.29 E-value=0.15 Score=36.32 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
....|..++|+|...+||.+..+|.|.||.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34568999999999999999999999999994
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.23 E-value=6.7 Score=39.35 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=85.9
Q ss_pred ceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe-cCCCe--EE
Q 005956 311 DVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG-VCEKR--VV 385 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd-l~~~~--~~ 385 (667)
.+.+.++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+. .+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68889999999 454433 23333344333333333322334778889999 777777766666666663 33332 22
Q ss_pred --EecccCCceEEEEEeeCCCEEEEEe---cCCcEEEEEecCCcce-eeeE-eeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 386 --DWADVRDVISAICYIPDGKGFIVGS---ITGTCHFYKASGNDLK-LEKV-DFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 386 --~~~~~~~~v~~v~~spdg~~l~~gs---~dg~i~l~d~~~~~~~-~~~~-~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
.+......|+++.++|||..+++.. .++.+.+--+....-. ...+ ............++.+.|.+++ .+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEE
Confidence 2222223899999999999988866 3467776655422211 1111 1111111224689999999986 55555
Q ss_pred EeCC
Q 005956 459 TSED 462 (667)
Q Consensus 459 ~s~d 462 (667)
+...
T Consensus 183 ~~~~ 186 (253)
T PF10647_consen 183 GRSA 186 (253)
T ss_pred eCCC
Confidence 4433
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.94 E-value=1.4 Score=48.19 Aligned_cols=153 Identities=13% Similarity=0.239 Sum_probs=94.9
Q ss_pred eeccccceEEEEecCCC-eEEEEe--CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC---CCCEEEEEecCCeEEEEe
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~---d~~~l~sgs~Dg~v~iwd 378 (667)
+..--.+|..++|.... .+++.- .+|.+++= ....+. .-..|..+.|.|. +.-.+++......|.+|.
T Consensus 15 L~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viG---qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 15 LHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIG---QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred HHhhhccccceEecCCCEEEEEeeeeeCCccccC---CccEee---ccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 33334678999998655 555542 23333221 122333 3345889999983 222455666788999998
Q ss_pred cCC-----CeEEE--eccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 379 VCE-----KRVVD--WADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 379 l~~-----~~~~~--~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
+.- ++... .-.. .--...+.|+|....|++-+....-.++++.......+ ..+.. .+.|.|.+
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~~-----~G~IhCAC 162 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIKT-----SGLIHCAC 162 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-EeccC-----CceEEEEE
Confidence 752 22221 1111 11234567999998888888776767777775554433 22333 37899999
Q ss_pred EccCCCeEEEEEeCCCcEEEEE
Q 005956 448 FSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd 469 (667)
|.+||.+++++.+..=.-+|||
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEec
Confidence 9999877777777766788997
No 402
>PRK10115 protease 2; Provisional
Probab=93.83 E-value=16 Score=42.38 Aligned_cols=195 Identities=9% Similarity=0.072 Sum_probs=91.2
Q ss_pred EEEEecCCC-eEE-EEeCC-----CcEEEEecCCC--eEeEEeeC-CCcEEEEEEeeCCCCEEEEEecC---CeEEEEec
Q 005956 313 LDLAWSNSN-YLL-SCSMD-----KTVRMWQVGCN--QCLNVFDH-HNYVTCVQFNPIDDNYFISGSID---GKVRIWGV 379 (667)
Q Consensus 313 ~~l~~s~~~-~l~-s~s~D-----g~I~iWd~~~~--~~~~~~~h-~~~V~~l~f~p~d~~~l~sgs~D---g~v~iwdl 379 (667)
..++|.+|+ .|+ +.-.+ ..|..+++.++ +-...+.. .....-..+.+.++++++..+.. +.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999887 444 43322 36888899888 44444542 22233223333367766655433 46888884
Q ss_pred C--CCeEEEecccC-CceEEEEEeeCCCEEEEEecC--CcEEEEEecCCc-ceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 380 C--EKRVVDWADVR-DVISAICYIPDGKGFIVGSIT--GTCHFYKASGND-LKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 380 ~--~~~~~~~~~~~-~~v~~v~~spdg~~l~~gs~d--g~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
. .+......... +....+. ..+..+.+-+.. ...+|+.+.-.. .....+.... ....|..+.+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~----~~~~i~~~~~~~~-- 326 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR----ENIMLEGFTLFTD-- 326 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCC----CCCEEEEEEEECC--
Confidence 2 33322222222 2222222 223444444432 233344332111 1111111110 1246788888743
Q ss_pred eEEEEEeCCCcEEE--EECCc-ceeeEEeCCCCCCeEEEEEc--CCCC-EEEEEeC---CCcEEEEEcCCCC
Q 005956 454 QRIMITSEDSKLRI--LDGVD-VIHKFKGLPKSGSQMSASFT--TTGK-HIISIGD---DCRVYVWNYDELC 516 (667)
Q Consensus 454 ~~l~~~s~dg~I~i--wd~~~-~~~~~~~~~~~~~v~~v~~s--pdg~-~l~sgs~---Dg~I~iWd~~~~~ 516 (667)
.++++...++.-++ +|... ....+.. .....+..+.++ +++. ++++.+. -+.|+.+|..+++
T Consensus 327 ~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 327 WLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 57777777775554 45432 2222221 112223333344 3433 4444432 3688999988765
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=0.24 Score=57.17 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=51.6
Q ss_pred cccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEE---EEeeCCCCEEEEEecCCeEEEEec
Q 005956 308 HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCV---QFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l---~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
-.++|++++|+.+| .++.|-.+|.|.+||+..++.++.+. |..+.+.+ .+.. ++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 35789999999999 88888899999999999999888875 44444433 3333 4556888777776 4543
No 404
>PHA02713 hypothetical protein; Provisional
Probab=93.63 E-value=4.9 Score=45.50 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=52.6
Q ss_pred cEEEEecCCCeEeEEeeCCCc--EEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEecccCCce-EEEEEee
Q 005956 331 TVRMWQVGCNQCLNVFDHHNY--VTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVRDVI-SAICYIP 401 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~~~v-~~v~~sp 401 (667)
.+..||..+++....-....+ -.+++.. ++.+++.|+.+ ..+..||..+..-.......... ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877654332221111 1223332 67777888754 34788998887654433222111 1122234
Q ss_pred CCCEEEEEecCC-----cEEEEEecCCcce
Q 005956 402 DGKGFIVGSITG-----TCHFYKASGNDLK 426 (667)
Q Consensus 402 dg~~l~~gs~dg-----~i~l~d~~~~~~~ 426 (667)
+|+..++|+.++ .+..||..++...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 678888888764 4788998876554
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.50 E-value=1.8 Score=45.94 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCCcEEEEecCCCeEeEEeeCC---CcEEEEEEeeC-CCC-EEEEEecCCeEEEEec-CCCe-----EEEeccc------
Q 005956 328 MDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPI-DDN-YFISGSIDGKVRIWGV-CEKR-----VVDWADV------ 390 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~-d~~-~l~sgs~Dg~v~iwdl-~~~~-----~~~~~~~------ 390 (667)
.-.++.+||+.+.+.++++... ..+..+.|... +.. -|+.+...++|..|-- ..++ ++.+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3468999999999999999743 34667777651 122 2444445556655543 3332 3322111
Q ss_pred -----------CCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee--eEeeccccC----------cCCCCeEEE
Q 005956 391 -----------RDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE--KVDFHDRKK----------TSGNKITGI 446 (667)
Q Consensus 391 -----------~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~--~~~~~~~~~----------~~~~~I~~l 446 (667)
..-|+.|.+|.|.++|.+.+ .+|.++.||+.....+.. ++.+-+... .-.+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 34589999999999998876 689999999987554433 333322110 011223567
Q ss_pred EEccCCCeEEEEEe
Q 005956 447 QFSRDESQRIMITS 460 (667)
Q Consensus 447 ~~sp~g~~~l~~~s 460 (667)
+.|-||.++.++.|
T Consensus 380 qlS~DGkRlYvTnS 393 (461)
T PF05694_consen 380 QLSLDGKRLYVTNS 393 (461)
T ss_dssp EE-TTSSEEEEE--
T ss_pred EEccCCeEEEEEee
Confidence 77888754444443
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.39 E-value=2.2 Score=45.53 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=57.5
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCCC-----eE--e-EEeeC-----CCcEEEEEEeeCCCCEEEEEecC-----
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCN-----QC--L-NVFDH-----HNYVTCVQFNPIDDNYFISGSID----- 371 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~-----~~--~-~~~~h-----~~~V~~l~f~p~d~~~l~sgs~D----- 371 (667)
.....|++.+++ |+.+.....+++.|.... +. + ..+.. ......++|.| ++.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 346778888888 444555543444455321 21 1 12221 34477899999 88776654421
Q ss_pred --------------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe
Q 005956 372 --------------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 372 --------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs 410 (667)
+.|.-++..+++...+.........++|+|+|+.+++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 446666666655544333334467889999988876533
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.36 E-value=0.95 Score=48.35 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCCEEE-EEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-------EEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 361 DDNYFI-SGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-------GFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 361 d~~~l~-sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-------~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
+.++|+ .|+...+++-.|+..|+++.--..++.+ -+.|.|+.+ .-++|-.+..|.-.|.+-..........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4555667888899999988643444444 677777542 2345555555655565533322111111
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
.. ........+..-..+| ++++++..|.|++||--....+.....-+..|..+..+.+|++|++.+. ..+.+-|+
T Consensus 557 Kd--Y~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KD--YKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hh--ccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 0111333444444444 9999999999999994332222223335678899999999999988774 56777776
Q ss_pred CC
Q 005956 513 DE 514 (667)
Q Consensus 513 ~~ 514 (667)
.-
T Consensus 632 ~i 633 (776)
T COG5167 632 PI 633 (776)
T ss_pred cc
Confidence 54
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.13 E-value=3.3 Score=46.71 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=72.1
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec--ccCCceEEEEEee--CCCEEEEEecCCcEEEEEec-----
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP--DGKGFIVGSITGTCHFYKAS----- 421 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~----- 421 (667)
.+.-+.-+. -++..++-+....+.|||.+.+...... ...+.|..+.|.. +|+.+++.+-...|.+|--.
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444444 3445555555567999999998866433 4478899998864 88888888888899888542
Q ss_pred CCcc---eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 422 GNDL---KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 422 ~~~~---~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
.... ....+.+.. ....+|.+..|.++| .+++++ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISS---HTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeec---CCCCCccceeEecCC--eEEEEe-CCEEEEECC
Confidence 1111 112333322 123679999999997 444444 457888873
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.80 E-value=0.38 Score=46.24 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=38.1
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEee-CC-CcEEEEEEeeCCCCEEEEE--ecCCeEEEEecC
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFD-HH-NYVTCVQFNPIDDNYFISG--SIDGKVRIWGVC 380 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~-~~V~~l~f~p~d~~~l~sg--s~Dg~v~iwdl~ 380 (667)
+..+++.|+.|+.|++.-++.+.... |+ .++....... .+..+.++ |.|..++.|++.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 78899999999999999888877765 44 3343333333 44455555 555555555554
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=92.68 E-value=7 Score=43.36 Aligned_cols=103 Identities=8% Similarity=0.078 Sum_probs=57.6
Q ss_pred eEEEEeCCC-----cEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC--CeEEEEecCCCeEEEecccCC
Q 005956 322 YLLSCSMDK-----TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVDWADVRD 392 (667)
Q Consensus 322 ~l~s~s~Dg-----~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iwdl~~~~~~~~~~~~~ 392 (667)
.++.||.++ ++..||..++.....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+++-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 566676543 56778887765443322 1111112222 2 67777888764 358888887766544333322
Q ss_pred ceE-EEEEeeCCCEEEEEecCC---cEEEEEecCCcce
Q 005956 393 VIS-AICYIPDGKGFIVGSITG---TCHFYKASGNDLK 426 (667)
Q Consensus 393 ~v~-~v~~spdg~~l~~gs~dg---~i~l~d~~~~~~~ 426 (667)
... .....-+|+..++|+.++ .+..||..++...
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 221 122234778888887654 4678888776554
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.50 E-value=26 Score=40.98 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=101.5
Q ss_pred CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK 429 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~ 429 (667)
.....+..+-..++.|+=... ..||+++-. +....|....+ ++....+.+...+++++.++.+...++....+....
T Consensus 449 ~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~ 525 (1096)
T KOG1897|consen 449 TDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS 525 (1096)
T ss_pred ccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccceeeee
Confidence 333444444434555444432 457777755 44444444433 344444455567888887777777777765532210
Q ss_pred EeeccccCcCCCCeEEEEEccC--CCe---EEEEEeCCCcEEEEE-CCcce--eeE--EeCCCCCCeEEEEEcCCCCEEE
Q 005956 430 VDFHDRKKTSGNKITGIQFSRD--ESQ---RIMITSEDSKLRILD-GVDVI--HKF--KGLPKSGSQMSASFTTTGKHII 499 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~--g~~---~l~~~s~dg~I~iwd-~~~~~--~~~--~~~~~~~~v~~v~~spdg~~l~ 499 (667)
.+.....|.|+.++|- +.+ ++++|..+..+.+.- ..+.. ... .+..-...|.-..|-.|..||.
T Consensus 526 ------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 526 ------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred ------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence 1222367899999875 334 788888777665543 22211 111 1111223455556666788999
Q ss_pred EEeCCCcEEEEEcC--CCCccccc--c-ccCccceeEEccCCcEEEEecC
Q 005956 500 SIGDDCRVYVWNYD--ELCFPSSK--Q-KNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 500 sgs~Dg~I~iWd~~--~~~~~~~~--~-~~~~~~~~~fs~dg~~lav~w~ 544 (667)
++..||.+.-|.++ ++.....+ + ...+...-.|+..+..-.++-+
T Consensus 600 valgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s 649 (1096)
T KOG1897|consen 600 VALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS 649 (1096)
T ss_pred EEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC
Confidence 99999988766554 44332222 1 1233444566666654444433
No 412
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.44 E-value=7 Score=37.67 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=78.7
Q ss_pred CEEEEEecCCeEEEEecCC--CeEEEecccCCceEEEEEeeCCCEEEEEecCC------cEEEE---EecCCcceeeeEe
Q 005956 363 NYFISGSIDGKVRIWGVCE--KRVVDWADVRDVISAICYIPDGKGFIVGSITG------TCHFY---KASGNDLKLEKVD 431 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg------~i~l~---d~~~~~~~~~~~~ 431 (667)
+.|+.+...++|.+|++.+ .++......-+.|..+.++..|+++++-=.+. .+|+| ...........+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4554446678899999983 34455555668899999999999999954322 45665 2211011111111
Q ss_pred ecccc-----------------CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----eEEeC-------CC
Q 005956 432 FHDRK-----------------KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----KFKGL-------PK 482 (667)
Q Consensus 432 ~~~~~-----------------~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----~~~~~-------~~ 482 (667)
+-++. .....+..+++..|-.++ |++|+ ++.+.+|.+..... .+-.. ..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 11210 011245677777776434 44444 35788886542221 11111 11
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 483 SGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 483 ~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
.-.+..++|. +.|||..+ +-.+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 2234555554 56888877 455676654
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.42 E-value=4 Score=46.05 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=72.2
Q ss_pred eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE--ccCCCeEEEEEeCCCcEEEEECC
Q 005956 394 ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 394 v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~--sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
++-+.-+.-++..++-.....+.|||.+...+..+. .+ ...+.|..+.| .|+| +.+++.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~-~f-----~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE-SF-----SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQL 104 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee-ee-----cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEcc
Confidence 444444455555555555668999999987755441 12 22478999988 4565 778888888899988521
Q ss_pred -----------cceeeEEeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 472 -----------DVIHKFKGLPKS-GSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 472 -----------~~~~~~~~~~~~-~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
..+..+....++ .+|.+..|.++|.+++.+| +.++|++-.
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 123333333333 6788999999997776554 578888753
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.05 E-value=8.5 Score=44.00 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=74.1
Q ss_pred ceEEEEecC---CCeEEEEeCCCcEEEEecCC-------C-------------eEeEEeeCCCcEEEEEEe--eCCCCEE
Q 005956 311 DVLDLAWSN---SNYLLSCSMDKTVRMWQVGC-------N-------------QCLNVFDHHNYVTCVQFN--PIDDNYF 365 (667)
Q Consensus 311 ~V~~l~~s~---~~~l~s~s~Dg~I~iWd~~~-------~-------------~~~~~~~h~~~V~~l~f~--p~d~~~l 365 (667)
.|+.|.... ...|+.|..||.|.+|.+++ . ++.-.+.....+++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 455554433 22899999999999996521 1 112233456689999998 6 67788
Q ss_pred EEEecCCeEEEEecCC--CeEEE--ecccCCceEEEEEeeCC---C---EEEEEecCCcEEEEEe
Q 005956 366 ISGSIDGKVRIWGVCE--KRVVD--WADVRDVISAICYIPDG---K---GFIVGSITGTCHFYKA 420 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~--~~~~~--~~~~~~~v~~v~~spdg---~---~l~~gs~dg~i~l~d~ 420 (667)
|+++....|.||-... .+... ...+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888775443 22211 22356678999998743 2 7778889999999888
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.03 E-value=11 Score=40.62 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=91.8
Q ss_pred CCCEEEEEecCCeEEEEecCCCe-----EEEecccCCceEEEEEee-----CCCEEEEEecCCcEEEEEecCCcc-----
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKR-----VVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKASGNDL----- 425 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~-----~~~~~~~~~~v~~v~~sp-----dg~~l~~gs~dg~i~l~d~~~~~~----- 425 (667)
+...|++|+..|.++||+...+. ++--.....+|..+..-+ +...||+ -.-..+.+|.+....-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45789999999999999986543 233345567777776543 2234444 5667888888843221
Q ss_pred ---eeeeEeeccccCcCCCCeEEEEEccC----CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEE
Q 005956 426 ---KLEKVDFHDRKKTSGNKITGIQFSRD----ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI 498 (667)
Q Consensus 426 ---~~~~~~~~~~~~~~~~~I~~l~~sp~----g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l 498 (667)
....+.-+. . ......++.-|- |..+|.+-+.||.+.+|+........... ..--...++|.+.-..+
T Consensus 115 ~~~~L~~~yeh~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp-~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 115 NQYQLELIYEHS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP-DFLLPGPLCYCPRTDSF 189 (418)
T ss_pred cEEEEEEEEEEe-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC-CCCCCcCeEEeecCCEE
Confidence 111111111 1 122333443332 24689999999999999977655333322 22233456777888889
Q ss_pred EEEeCCCcEEEEEcCC
Q 005956 499 ISIGDDCRVYVWNYDE 514 (667)
Q Consensus 499 ~sgs~Dg~I~iWd~~~ 514 (667)
++++.+..|.-|.+..
T Consensus 190 vt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 190 VTASSSWTLECYKYQD 205 (418)
T ss_pred EEecCceeEEEecHHH
Confidence 9999888999998743
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.96 E-value=10 Score=36.87 Aligned_cols=204 Identities=11% Similarity=0.013 Sum_probs=106.3
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCC--CEEEEEecCCeEEEEecCCC--eEEEe------cccC
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCEK--RVVDW------ADVR 391 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~--~~l~sgs~Dg~v~iwdl~~~--~~~~~------~~~~ 391 (667)
++..--..+.|.-||+.+++..+.--...++..+.+--.++ .+.+.++..-.|.-||.... .+... ...+
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kk 108 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKK 108 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHh
Confidence 34444445667779988766554432222233333322121 23333333333444663222 22111 1123
Q ss_pred CceEEEEEeeCCCEEEEEec----------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 392 DVISAICYIPDGKGFIVGSI----------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs~----------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
...+.-..+|+|+++ .|+. .|.++.|-....-.... ..-.--+.++|..+...+.++-+.
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~---------~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIW---------NCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeee---------hhccCCccccccccCcEEEEEccC
Confidence 446666788999984 4442 23444444332111110 001233578898876667777788
Q ss_pred CCcEEEEECC-------cceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccce
Q 005956 462 DSKLRILDGV-------DVIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSC 529 (667)
Q Consensus 462 dg~I~iwd~~-------~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~ 529 (667)
+-+|.-||.. +....+.... .....-.+++..+|.+.++.-..++|...|..+++...... ....+++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 8888888722 2222222211 11122345666788888888888999999999998755432 2344556
Q ss_pred eEEccC
Q 005956 530 EHFFSE 535 (667)
Q Consensus 530 ~~fs~d 535 (667)
++|--.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 677643
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.75 E-value=7.6 Score=38.83 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=70.3
Q ss_pred CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-EEEEecCCCeEEE-e--cccCCceEEEEEeeCCCEEEEEec----
Q 005956 340 NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK-VRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSI---- 411 (667)
Q Consensus 340 ~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~-v~iwdl~~~~~~~-~--~~~~~~v~~v~~spdg~~l~~gs~---- 411 (667)
++++........-..|+|+|....-++.+-.-|+ ..++|..+.+... . ...+.-.-.=+|+|||.+|...-.
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 4555555555666678888866777777766666 5688888765332 1 111222333479999999887543
Q ss_pred -CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 412 -TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 412 -dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
-|.|-+||.+..-...-.+. +++-.-..+.+.+|| ..+++.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~------t~GiGpHev~lm~DG-rtlvva 179 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFS------THGIGPHEVTLMADG-RTLVVA 179 (366)
T ss_pred CCceEEEEecccccceecccc------cCCcCcceeEEecCC-cEEEEe
Confidence 37899999984332222333 333455678899997 444443
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.61 E-value=22 Score=38.26 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred EEecCCC-eEEEEeCCCcEEE---EecC-----CCeEeEEe----eCC--CcEEEEEEeeC----------CCCEEEEEe
Q 005956 315 LAWSNSN-YLLSCSMDKTVRM---WQVG-----CNQCLNVF----DHH--NYVTCVQFNPI----------DDNYFISGS 369 (667)
Q Consensus 315 l~~s~~~-~l~s~s~Dg~I~i---Wd~~-----~~~~~~~~----~h~--~~V~~l~f~p~----------d~~~l~sgs 369 (667)
++.+|++ .|+.+..++.+.+ |+.. .+...... .+. ..|+++.+-|. |...++.|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 4566777 6666666665554 5431 11222221 122 57888877763 457899999
Q ss_pred cCCeEEEEecCCCeEEEecccCCceEEEEEee
Q 005956 370 IDGKVRIWGVCEKRVVDWADVRDVISAICYIP 401 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp 401 (667)
.+|.|++|......+....-|..+|..+.+..
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 99999999875544444445666777666543
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.09 E-value=8.8 Score=40.88 Aligned_cols=148 Identities=10% Similarity=0.111 Sum_probs=75.3
Q ss_pred CcEEEEEEeeCCCCEEEEEe-----------cCC-eEEEEecCC--CeE---EEecccCCceEEEEEeeCCCEEEEEecC
Q 005956 350 NYVTCVQFNPIDDNYFISGS-----------IDG-KVRIWGVCE--KRV---VDWADVRDVISAICYIPDGKGFIVGSIT 412 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs-----------~Dg-~v~iwdl~~--~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~d 412 (667)
.....|+|.+ +++++++-. ..+ .|.+++-.. ++. ..+...-.....+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 3556788888 777776642 123 677775432 222 2233333456889999988 4444444
Q ss_pred CcEEEEEecCCcce---ee-eEe-eccccCcCCCCeEEEEEccCCCeEEEEEeCC-------------------CcEEEE
Q 005956 413 GTCHFYKASGNDLK---LE-KVD-FHDRKKTSGNKITGIQFSRDESQRIMITSED-------------------SKLRIL 468 (667)
Q Consensus 413 g~i~l~d~~~~~~~---~~-~~~-~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-------------------g~I~iw 468 (667)
...++.|....... .+ .+. +......+......++|.||| .+.++.+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 33334354332111 11 111 111001123457789999997 444433311 334445
Q ss_pred ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
|........... .......++|+++|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 543222222222 234456889999998876644
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.07 E-value=0.14 Score=57.86 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=71.1
Q ss_pred eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecC--CCeEeEEe-----e-CCCcEEEEEEeeC--CCCEEEEEecC
Q 005956 304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVG--CNQCLNVF-----D-HHNYVTCVQFNPI--DDNYFISGSID 371 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~--~~~~~~~~-----~-h~~~V~~l~f~p~--d~~~l~sgs~D 371 (667)
.++|..+.|..|.|-... .++ -.-|.+.||+++ .|+....+ . ...++.-+.|.|. +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 345778888888885433 222 233678899875 34332221 1 2334444555441 55677788888
Q ss_pred CeEEEEecCCCeEEEecccCCceE-----------EEEEeeCCCEEEEEecCCcEEEEEec
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVIS-----------AICYIPDGKGFIVGSITGTCHFYKAS 421 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~-----------~v~~spdg~~l~~gs~dg~i~l~d~~ 421 (667)
+.+++..+.....--+..|...+. --.++|||+.++.++.||.+++|.+.
T Consensus 205 ~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 999888776533211222322222 22379999999999999999999875
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=6.1 Score=44.58 Aligned_cols=225 Identities=12% Similarity=0.119 Sum_probs=109.2
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe--
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW-- 387 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~-- 387 (667)
..-++..+|....-..+.--.|+|+++. |+.+.... ....+..+.|+. ...|++...+|++++|++........
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~sv 121 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSV 121 (829)
T ss_pred CceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhccccc
Confidence 3445555554411111333468888876 55554442 333788999985 66777788999999999876544331
Q ss_pred --cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe--EEEEEe-CC
Q 005956 388 --ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ--RIMITS-ED 462 (667)
Q Consensus 388 --~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~--~l~~~s-~d 462 (667)
......|..+.+..+ .+++-+.+|.+.+-.-.......+ +...... ..+-++-...+++.. .++-.. ..
T Consensus 122 g~e~~~~~I~ec~~f~~--GVavlt~~g~v~~i~~~~~~~~~~---~~diP~~-~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 122 GFESQMSDIVECRFFHN--GVAVLTVSGQVILINGVEEPKLRK---MPDIPYN-ELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred ccccccCceeEEEEecC--ceEEEecCCcEEEEcCCCcchhhh---CCCCCCc-cCCCcceeEecCCCcceeEEeechhh
Confidence 111222333333333 455555666655443221111111 1110000 011122222222111 111111 00
Q ss_pred CcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc--ccCccceeEEccCCcEE
Q 005956 463 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--KNSVRSCEHFFSEGVSV 539 (667)
Q Consensus 463 g~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~fs~dg~~l 539 (667)
+ ..++.... ..+........+.+..+++||+.++|+-=.++|.|.+-+.+..+...... .........|..+. .+
T Consensus 196 ~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd-aV 273 (829)
T KOG2280|consen 196 G-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND-AV 273 (829)
T ss_pred h-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC-ce
Confidence 0 01111111 11111111124678889999999999999999999998887655433322 22233345666544 45
Q ss_pred EEecCCC
Q 005956 540 AVQWPGI 546 (667)
Q Consensus 540 av~w~~~ 546 (667)
++.|...
T Consensus 274 vl~~e~~ 280 (829)
T KOG2280|consen 274 VLSWEVN 280 (829)
T ss_pred EEEEeee
Confidence 5556543
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.53 E-value=9.1 Score=33.91 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=70.2
Q ss_pred EecCCC-eEEEEeCCCcEEEEecCC--------CeEeEEeeCCCcEEEEEEeeC----CCCEEEEEecCCeEEEEecCCC
Q 005956 316 AWSNSN-YLLSCSMDKTVRMWQVGC--------NQCLNVFDHHNYVTCVQFNPI----DDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 316 ~~s~~~-~l~s~s~Dg~I~iWd~~~--------~~~~~~~~h~~~V~~l~f~p~----d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
.|.... .|+.++.-+.|.|++... ...+..+.....|++++-.+. +...|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 344444 677888888999998753 335666777888888876552 245666665 567999999998
Q ss_pred eEEEecccCCceEEEEEee----CCCEEEEEecCCcEEEEEecC
Q 005956 383 RVVDWADVRDVISAICYIP----DGKGFIVGSITGTCHFYKASG 422 (667)
Q Consensus 383 ~~~~~~~~~~~v~~v~~sp----dg~~l~~gs~dg~i~l~d~~~ 422 (667)
.-+.+....+.++++.+-. +...+++|+ +-.|.-||...
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG 126 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence 8887777888888888754 223444443 33444444443
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.49 E-value=0.76 Score=31.86 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=26.5
Q ss_pred ccEEEEEEcCCC---CEEEEEECCCcEEEEEcCC
Q 005956 223 GCIWTLKFSPDG---RYLASGGEDGVVRIWHVTS 253 (667)
Q Consensus 223 ~~I~~v~fspdg---~~Latgs~Dg~I~vWdv~~ 253 (667)
|+|.+|+|||+. .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999854 4888888889999999984
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.45 E-value=2.8 Score=44.92 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=82.6
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC-------CCCEEEEEecCCeEEEEecCC-CeEEEecccCC-
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-------DDNYFISGSIDGKVRIWGVCE-KRVVDWADVRD- 392 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-------d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~~~~~- 392 (667)
.+..++.-..++-.|++.|+.+........| -++|.|. +.+.|+--+ +..|.-.|.+- +..+.....+.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhc
Confidence 4556777778888899999999998866666 6788872 233444444 45555556543 32222222222
Q ss_pred ----ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 393 ----VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 393 ----~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
...+..-.. ..++|+|+..|.|++||.-+..... . ...-+..|..+..+.+| .++++++. ..+.+-
T Consensus 560 ~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKt-a------lP~lG~aIk~idvta~G-k~ilaTCk-~yllL~ 629 (776)
T COG5167 560 KTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKT-A------LPGLGDAIKHIDVTANG-KHILATCK-NYLLLT 629 (776)
T ss_pred ccccccccccccc-CceEEEecCCCceeeehhhcchhhh-c------CcccccceeeeEeecCC-cEEEEeec-ceEEEE
Confidence 233333223 3489999999999999975433221 1 22234678899999987 55555443 355565
Q ss_pred EC
Q 005956 469 DG 470 (667)
Q Consensus 469 d~ 470 (667)
|+
T Consensus 630 d~ 631 (776)
T COG5167 630 DV 631 (776)
T ss_pred ec
Confidence 53
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.00 E-value=44 Score=38.91 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=43.5
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCC----------CeE--e-EEe---------eCCCcEEEEEEeeC--CCCE
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----------NQC--L-NVF---------DHHNYVTCVQFNPI--DDNY 364 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----------~~~--~-~~~---------~h~~~V~~l~f~p~--d~~~ 364 (667)
-.|..|..+++| +|+..|..+ |.|-.+.. ++. . +++ .+...|..+.|+|. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999 666666654 44444421 111 1 111 13346778888873 2567
Q ss_pred EEEEecCCeEEEEecC
Q 005956 365 FISGSIDGKVRIWGVC 380 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~ 380 (667)
|+.-..|+++|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 7777778888888873
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.68 E-value=7 Score=45.29 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=54.4
Q ss_pred CCceEEEEEeeCCCEEEEEecCCcEEEEEecC---------Cc--ceeeeEeeccc--cCcCCCCeEEEEEccCC--CeE
Q 005956 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASG---------ND--LKLEKVDFHDR--KKTSGNKITGIQFSRDE--SQR 455 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~---------~~--~~~~~~~~~~~--~~~~~~~I~~l~~sp~g--~~~ 455 (667)
.-.|..+.++|+|++++..+..|.+.+.=.+. ++ .....+.+... .......|..+.|+|.+ ..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34588999999999999988876554433221 11 11112222111 12234678999999974 478
Q ss_pred EEEEeCCCcEEEEECCc
Q 005956 456 IMITSEDSKLRILDGVD 472 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~ 472 (667)
|++-..|+++|+||+.+
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999763
No 427
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.47 E-value=27 Score=35.74 Aligned_cols=166 Identities=11% Similarity=0.136 Sum_probs=93.4
Q ss_pred cEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCC----CEEEEE-ecCCeEEEEecCCCeEEEeccc--------
Q 005956 331 TVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDD----NYFISG-SIDGKVRIWGVCEKRVVDWADV-------- 390 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~----~~l~sg-s~Dg~v~iwdl~~~~~~~~~~~-------- 390 (667)
.|.+||+.+++.++.+. ....+..+.+...++ .+++.+ +..+-|.++|+.+++..+...+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988874 345778888876332 233333 3345799999999876543322
Q ss_pred ------------CCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceee----------eEeeccccCcCCCCeEE
Q 005956 391 ------------RDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE----------KVDFHDRKKTSGNKITG 445 (667)
Q Consensus 391 ------------~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~----------~~~~~~~~~~~~~~I~~ 445 (667)
.+.+..++.+| +|++|......+. ++|.+.+..+... .+...+. .......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 12245555554 5556665544332 3444432211110 1111111 1145677
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCc-----ceeeE-EeCCCCCCeEEEEEcC--CCCEEEEE
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVD-----VIHKF-KGLPKSGSQMSASFTT--TGKHIISI 501 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~-----~~~~~-~~~~~~~~v~~v~~sp--dg~~l~sg 501 (667)
+++.++| .++++--..+.|..|+... ....+ +....-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8888875 7777888889999999775 22233 3322256778888887 66554443
No 428
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.26 E-value=25 Score=36.59 Aligned_cols=104 Identities=9% Similarity=0.148 Sum_probs=56.4
Q ss_pred CeEEEEeCC-----CcEEEEecCCCeE---eEEee---CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeE
Q 005956 321 NYLLSCSMD-----KTVRMWQVGCNQC---LNVFD---HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRV 384 (667)
Q Consensus 321 ~~l~s~s~D-----g~I~iWd~~~~~~---~~~~~---h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~ 384 (667)
..++.|+.+ ..+..+|+.+.+. ..... ....-.+++.. ++++++.|+.. ..+..||+.+.+-
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 355666654 3566677766553 12221 11111222222 56777777642 4588899888765
Q ss_pred EEecccC--CceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcce
Q 005956 385 VDWADVR--DVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLK 426 (667)
Q Consensus 385 ~~~~~~~--~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~ 426 (667)
....... ......+...+++.++.|+.++ .+..||..++...
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 4433211 1222333345677888887664 3568888876653
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.99 E-value=30 Score=35.62 Aligned_cols=215 Identities=9% Similarity=0.018 Sum_probs=99.1
Q ss_pred eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE--E
Q 005956 312 VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--V 385 (667)
Q Consensus 312 V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~--~ 385 (667)
..++.|..+..+++| ..+ +.+.-.+.++.-..+. .......+.... ++ ....++..|.|+.= .+.++. .
T Consensus 64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeE
Confidence 566777654444443 344 3444444444333332 223334444444 33 33334455554332 223331 1
Q ss_pred EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 005956 386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 465 (667)
Q Consensus 386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I 465 (667)
........+..+..++||++++++.......-||--....... ......+|..+.|.|++ .+.+ ....|.|
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~ 209 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-------NRNSSRRIQSMGFSPDG-NLWM-LARGGQI 209 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-------E--SSS-EEEEEE-TTS--EEE-EETTTEE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-------ccCccceehhceecCCC-CEEE-EeCCcEE
Confidence 1334456788888899999888886655555666543222211 22234789999999996 4434 4488999
Q ss_pred EEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc----cccCccceeEEccCC
Q 005956 466 RILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEG 536 (667)
Q Consensus 466 ~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg 536 (667)
+.=+.......+.. ....-.+..++|.+++...|+|+ .|.+ +...+.++.=... ........+.|.++.
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 98873322222221 12334589999999888777766 4533 3455555531111 222233345666666
Q ss_pred cEEEEe
Q 005956 537 VSVAVQ 542 (667)
Q Consensus 537 ~~lav~ 542 (667)
+-+++.
T Consensus 288 ~gf~lG 293 (302)
T PF14870_consen 288 KGFVLG 293 (302)
T ss_dssp EEEEE-
T ss_pred ceEEEC
Confidence 666654
No 430
>PHA03098 kelch-like protein; Provisional
Probab=88.88 E-value=16 Score=41.07 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCCEEEEEecCC------eEEEEecCCCeEEEecccCCc-eEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceee
Q 005956 361 DDNYFISGSIDG------KVRIWGVCEKRVVDWADVRDV-ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLE 428 (667)
Q Consensus 361 d~~~l~sgs~Dg------~v~iwdl~~~~~~~~~~~~~~-v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~ 428 (667)
++.+++.|+.++ .+..||..+.+.........+ .......-+++.++.|+.+ ..+..||..++.....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 556666666542 577888888776543322211 1111222367788888865 3467788877655322
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d------g~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sg 501 (667)
. .+.. ..... +++.. + +.+++.|+.+ ..+..||..+..-.... .+......++ ...+++..+.|
T Consensus 374 ~-~lp~----~r~~~-~~~~~-~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~G 444 (534)
T PHA03098 374 P-PLIF----PRYNP-CVVNV-N-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIG 444 (534)
T ss_pred C-CcCc----CCccc-eEEEE-C-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEEC
Confidence 0 0110 01111 12222 3 3566666632 35788886532111111 0011111122 22356666666
Q ss_pred eCC--------CcEEEEEcCCCC
Q 005956 502 GDD--------CRVYVWNYDELC 516 (667)
Q Consensus 502 s~D--------g~I~iWd~~~~~ 516 (667)
|.+ ..+.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CccCCCCCcccceEEEecCCCCc
Confidence 643 237888877653
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.46 E-value=2 Score=42.03 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=46.4
Q ss_pred EeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 399 YIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
+..+++++++.+.+|.+++||+.+.+.....+.+..-.. .....|+.+.++.+| .-|++ -.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~-lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVT-LSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEE-EeCCCEEEecc
Confidence 456789999999999999999998876654322221111 344667888888776 33333 33467777774
No 432
>PLN02153 epithiospecifier protein
Probab=88.27 E-value=36 Score=35.68 Aligned_cols=102 Identities=9% Similarity=0.056 Sum_probs=54.4
Q ss_pred eEEEEeCC-------CcEEEEecCCCeEeEEeeC--CC-----cEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCC
Q 005956 322 YLLSCSMD-------KTVRMWQVGCNQCLNVFDH--HN-----YVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEK 382 (667)
Q Consensus 322 ~l~s~s~D-------g~I~iWd~~~~~~~~~~~h--~~-----~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~ 382 (667)
.++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCCC
Confidence 55556543 3577888877654322211 11 1222233 56777777754 35788998876
Q ss_pred eEEEeccc------CCceEEEEEeeCCCEEEEEecC-----------CcEEEEEecCCcce
Q 005956 383 RVVDWADV------RDVISAICYIPDGKGFIVGSIT-----------GTCHFYKASGNDLK 426 (667)
Q Consensus 383 ~~~~~~~~------~~~v~~v~~spdg~~l~~gs~d-----------g~i~l~d~~~~~~~ 426 (667)
+-...... .......+..-+++.++.|+.+ ..+.+||..+....
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 64432211 1111222223456777777754 24678888776553
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.12 E-value=36 Score=40.25 Aligned_cols=172 Identities=14% Similarity=0.226 Sum_probs=101.2
Q ss_pred cEEEEecCCCeEeEEeeCCC-----cEEEEEEeeCCCC-EEEEEe-----------cCCeEEEEecC-CCe---EEEecc
Q 005956 331 TVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDN-YFISGS-----------IDGKVRIWGVC-EKR---VVDWAD 389 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~d~~-~l~sgs-----------~Dg~v~iwdl~-~~~---~~~~~~ 389 (667)
.|++.|..+++.+..+.+.. .|..+.|+..+.. ++++|. .+|.++.|++- .++ ......
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37788888777776665333 4666677763333 333332 23446677653 333 333444
Q ss_pred cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
..+.|.++| |...++++| ....+++||+...++... .... ....|+.+++.. ..+++|...-.+.++
T Consensus 934 ~~~~v~Ai~--~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt~~---~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPVGAIC--PFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF------IPNRISSIQTYG---ARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccceEEe--ccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc------CceEEEEEeecc---eEEEEeeccceEEEE
Confidence 556666665 655555554 456999999987666543 1111 236788888865 467777666555554
Q ss_pred --ECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 469 --DGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 469 --d~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
+-. +....+....-...|+++.+ -|...+|.+..=|.+.+-.+...
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence 432 34455555444555666655 45567777777777777766543
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.08 E-value=15 Score=38.40 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=56.3
Q ss_pred ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC---CCeEEEEEeCC------C
Q 005956 393 VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSED------S 463 (667)
Q Consensus 393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~d------g 463 (667)
...+|+|.|||+.++ +...|.|++++ ..+......................++++|+ +..+.++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 467899999986655 56699999999 3333311111121112223466899999994 22333333321 1
Q ss_pred --cEEEEECCc-------ceeeEEeC----CCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 464 --KLRILDGVD-------VIHKFKGL----PKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 464 --~I~iwd~~~-------~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
.|.-|.... ....+... ........+.|.|||.+.++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 233232211 11122221 134455679999999777776643
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=21 Score=38.71 Aligned_cols=87 Identities=10% Similarity=0.151 Sum_probs=56.0
Q ss_pred ceEEEEEeeCCCEEEEEecCCcEEEEEe---------cCCcceee--eEeeccccCc--CCCCeEEEEEccCC--CeEEE
Q 005956 393 VISAICYIPDGKGFIVGSITGTCHFYKA---------SGNDLKLE--KVDFHDRKKT--SGNKITGIQFSRDE--SQRIM 457 (667)
Q Consensus 393 ~v~~v~~spdg~~l~~gs~dg~i~l~d~---------~~~~~~~~--~~~~~~~~~~--~~~~I~~l~~sp~g--~~~l~ 457 (667)
.|..+..++.|..++..+.+|.+.++=. .+++.... .+.+...... ..-.+..++|+|+. ...|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778888999999999999998776642 22222111 1111111111 11235567899974 46888
Q ss_pred EEeCCCcEEEEECCcceeeEEe
Q 005956 458 ITSEDSKLRILDGVDVIHKFKG 479 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~~~~~~~~ 479 (667)
.-+.|+.||+||.......+..
T Consensus 185 iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEecCcEEEEEecCCcchhhcc
Confidence 8899999999998876655543
No 436
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.42 E-value=38 Score=34.95 Aligned_cols=204 Identities=10% Similarity=0.016 Sum_probs=94.6
Q ss_pred cccceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeE----------------eEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956 308 HKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQC----------------LNVFDHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~----------------~~~~~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
+...|+++...+.. . ++-++....++++++..-.. ...+.+................++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 45678888888765 3 33444445599999832221 123334443333333321223445555
Q ss_pred cCCeEEEEecCCC--eEEEec-------ccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee--eEeecccc
Q 005956 370 IDGKVRIWGVCEK--RVVDWA-------DVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE--KVDFHDRK 436 (667)
Q Consensus 370 ~Dg~v~iwdl~~~--~~~~~~-------~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~--~~~~~~~~ 436 (667)
...+|.++..... +..... .....+..+..+++ ...+.+|+..+-..++++........ ...+...
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~- 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE- 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc-
Confidence 6677777654322 111111 11223333333333 56788888764455555533101000 0000000
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.....++..+....+ .++.+-.+. ..+.|.. ........ .-...+.++++. ..||+.-+. ..|.|+++.+
T Consensus 200 ~~~~~p~~i~~l~~~---e~Llc~~~~-~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~ 271 (302)
T smart00036 200 ETSLKPISVVQVPRD---EFLLCYDEF-GVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFHD-NGIEIRSIKT 271 (302)
T ss_pred ccccCceEEEEECCC---eEEEEECcE-EEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEcC-CcEEEEECCC
Confidence 000034444444432 333333333 2333322 11111111 123455677775 468887765 4599999999
Q ss_pred CCcccc
Q 005956 515 LCFPSS 520 (667)
Q Consensus 515 ~~~~~~ 520 (667)
+.....
T Consensus 272 ~~l~q~ 277 (302)
T smart00036 272 GELLQE 277 (302)
T ss_pred CceEEE
Confidence 875443
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=87.23 E-value=22 Score=37.37 Aligned_cols=107 Identities=10% Similarity=0.104 Sum_probs=61.7
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~ 383 (667)
...++++.+.+++.++..+..|.+++=..+.+..-.... ....+..+.+.| ++..++ ++.+|.+.. ....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCCCC
Confidence 357888899988855555666776543344443322222 123578889988 665554 556776553 444444
Q ss_pred EEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEE
Q 005956 384 VVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYK 419 (667)
Q Consensus 384 ~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d 419 (667)
.-.. .......+.+.|..+++.++ .+..|.|..|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 3221 12233577777776666655 45667776664
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.74 E-value=41 Score=34.64 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=103.0
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe--e-C---CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF--D-H---HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~--~-h---~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
...+.+|.|.....-...+..++| +--.+.|+.-... . . ......|.|.. ...+++| ..+ +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCCC
Confidence 457899999865533333445543 2222333322221 1 1 22466777753 4445544 445 344444444
Q ss_pred eEEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 383 RVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 383 ~~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
+.-.. .........+....++ .+.+++..|. ||...+....-+.+.... .+.+..+.-+++| .++++
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~-----~gs~~~~~r~~dG-~~vav 161 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSET-----SGSINDITRSSDG-RYVAV 161 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S---------EEEEEE-TTS--EEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCC-----cceeEeEEECCCC-cEEEE
Confidence 42221 1223344445544554 3333444454 454444443333222111 2678889999986 67777
Q ss_pred EeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc------cccCccceeE
Q 005956 459 TSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------QKNSVRSCEH 531 (667)
Q Consensus 459 ~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~------~~~~~~~~~~ 531 (667)
+.......-||... .-+..... ....|.+|.|+|++...+.+ ..|.|++=+.......... ......-.++
T Consensus 162 s~~G~~~~s~~~G~~~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred ECcccEEEEecCCCccceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE
Confidence 76666666788553 23333322 56889999999998876655 7888887772222111111 1111223457
Q ss_pred EccCCcEEEEecCCC
Q 005956 532 FFSEGVSVAVQWPGI 546 (667)
Q Consensus 532 fs~dg~~lav~w~~~ 546 (667)
|.+++.+.|+++++.
T Consensus 240 ~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 240 YRPPNEIWAVGGSGT 254 (302)
T ss_dssp ESSSS-EEEEESTT-
T ss_pred ecCCCCEEEEeCCcc
Confidence 777788777776653
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.30 E-value=2.3 Score=29.56 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.9
Q ss_pred CcEEEEEEeeCCC--CEEEEEecCCeEEEEecCC
Q 005956 350 NYVTCVQFNPIDD--NYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 350 ~~V~~l~f~p~d~--~~l~sgs~Dg~v~iwdl~~ 381 (667)
+.|.++.|+|..+ .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998555 6888888889999999985
No 440
>PLN02193 nitrile-specifier protein
Probab=85.96 E-value=56 Score=36.09 Aligned_cols=145 Identities=6% Similarity=-0.050 Sum_probs=70.1
Q ss_pred eEEEEeCC-------CcEEEEecCCCeEeEEee---CCC--cE-EEEEEeeCCCCEEEEEecC-----CeEEEEecCCCe
Q 005956 322 YLLSCSMD-------KTVRMWQVGCNQCLNVFD---HHN--YV-TCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR 383 (667)
Q Consensus 322 ~l~s~s~D-------g~I~iWd~~~~~~~~~~~---h~~--~V-~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~ 383 (667)
.++.|+.+ ..+.+||+.+.+-...-. ... .. .+++.. ++.+++.|+.+ ..+..||+.+.+
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 55556543 247788887765432111 111 11 112222 56777777765 358889998876
Q ss_pred EEEeccc---C-CceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 384 VVDWADV---R-DVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 384 ~~~~~~~---~-~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
-...... . ......+..-+++.++.|+.++ .+..||+.+...... ...............+.+ ++ +
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~R~~~~~~~~--~g-k 330 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC--STPGDSFSIRGGAGLEVV--QG-K 330 (470)
T ss_pred EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeC--CCCCCCCCCCCCcEEEEE--CC-c
Confidence 5543221 1 1111112223566777777543 466788776654321 111100011111122222 33 5
Q ss_pred EEEEEeCC----CcEEEEECCcc
Q 005956 455 RIMITSED----SKLRILDGVDV 473 (667)
Q Consensus 455 ~l~~~s~d----g~I~iwd~~~~ 473 (667)
+++.++.+ ..+.+||..+.
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEEEECCCCCccCceEEEECCCC
Confidence 66666654 46888997643
No 441
>PRK10115 protease 2; Provisional
Probab=85.96 E-value=76 Score=36.97 Aligned_cols=193 Identities=7% Similarity=-0.040 Sum_probs=95.8
Q ss_pred cceEEEEecCCC-eEEEE-eCCC----cEEEEecCCCeEeEE-eeCCCcEEEEEEeeCCCCEEEEEecC------CeEEE
Q 005956 310 GDVLDLAWSNSN-YLLSC-SMDK----TVRMWQVGCNQCLNV-FDHHNYVTCVQFNPIDDNYFISGSID------GKVRI 376 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~-s~Dg----~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~D------g~v~i 376 (667)
-.+..+.|+|++ +|+.+ ..+| .|++-|+.++..+.. +.... ..++|.+ |++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 456778899999 44433 3333 588999988864322 22222 4589999 77766655442 36888
Q ss_pred EecCCC--eEEE-ecccCCceE-EEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 377 WGVCEK--RVVD-WADVRDVIS-AICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 377 wdl~~~--~~~~-~~~~~~~v~-~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+++.++ +-.. +........ .+..+.+++++++.+.. +.+.+|+..........+.... ......+. +
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~-~ 277 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-----KDHEYSLD-H 277 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-----CCCEEEEE-e
Confidence 888877 2222 222222233 23334488887765543 4688888532211111111111 12222222 2
Q ss_pred cCCCeEEEEEeCC-C--cEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 450 RDESQRIMITSED-S--KLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 450 p~g~~~l~~~s~d-g--~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
.. ..+++.+..+ . .|...++... ...+........+..+.+. .+.++++...+|.-+++-++
T Consensus 278 ~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 22 2344444332 2 3333344321 1122221123467777776 33455566667765555443
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.75 E-value=59 Score=35.54 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE---e----c-ccCCceEEEEEeeCC
Q 005956 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD---W----A-DVRDVISAICYIPDG 403 (667)
Q Consensus 348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~----~-~~~~~v~~v~~spdg 403 (667)
.-...+.|+|.| ++++|++--..|.|++++..++.... + . ........|+++|+-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345678999999 88776665446999999865543211 1 1 135668899999874
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.67 E-value=16 Score=38.88 Aligned_cols=140 Identities=13% Similarity=0.124 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--c--ceee
Q 005956 402 DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D--VIHK 476 (667)
Q Consensus 402 dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~--~~~~ 476 (667)
|.+..+.+...|.+.=|-......... .+.... .++|.++.|++|+ +.+++--.+.+|.+++.. + ....
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d-----~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDD-----KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecC-----CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH
Confidence 444444444555555565554332221 333333 3799999999995 899999999999999852 1 1111
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--cccccccCccceeEEccCCcEEEEecCCCCcc
Q 005956 477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWPGIGTE 549 (667)
Q Consensus 477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~ 549 (667)
.+.......|...+|+.+ .-+|.....| +-+|-+...+. +........+....|.|+...+..+..-.+..
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ 178 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENV 178 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccc
Confidence 112224556889999765 5666666444 77777665443 33344556667778889888777766544433
No 444
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.46 E-value=39 Score=38.69 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=62.0
Q ss_pred ceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 393 VISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 393 ~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
.-..+.|-|.|..+++-..|| .+.++..++-.. -.+.+ .......+..++|.-. ..++.....+.|.+
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH--Gef~l---r~~~dEk~~~~~wn~~--s~vlav~~~n~~~l 320 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH--GEFDL---RVGCDEKAFLENWNLL--STVLAVAEGNLLKL 320 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCccc--CCccc---cCCchhhhhhhhhhHH--HHHHHHhhcceEEE
Confidence 344588999999999866554 455555443211 11111 0111244566777654 24445566778999
Q ss_pred EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
|-..+..--++.......+.-+.|+|..+.-+--...+.|..-.
T Consensus 321 wttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 321 WTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred EEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEE
Confidence 98776544444333455567788998764432223334444333
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=85.33 E-value=58 Score=36.07 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=54.8
Q ss_pred CC-eEEEEeCC--CcEEEEecCCCeEeEEeeCCCcE--EEEEEeeCCCCEEEEEecCC---eEEEEecCCCeEEEecccC
Q 005956 320 SN-YLLSCSMD--KTVRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVR 391 (667)
Q Consensus 320 ~~-~l~s~s~D--g~I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~~~~~~~~ 391 (667)
++ ..+.||.+ .++..||..+++-...-.-..+. .+++.. ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45 55566653 45778887665433222211111 122222 678888887654 4778888877654432221
Q ss_pred Cce-EEEEEeeCCCEEEEEecCCcEEEEEecCCcce
Q 005956 392 DVI-SAICYIPDGKGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 392 ~~v-~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
.+. ...+..-+|+..++| |.+.+||..++...
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 111 111223466666766 45788998776654
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.23 E-value=6.2 Score=38.63 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec---------------ccCCceEEEEEeeCCCEEEEEecCC
Q 005956 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---------------DVRDVISAICYIPDGKGFIVGSITG 413 (667)
Q Consensus 349 ~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~---------------~~~~~v~~v~~spdg~~l~~gs~dg 413 (667)
..++..+.. .++++++.+.+|.+++||+.+++.+... .....|..+.++.+|.-+++- .+|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCC
Confidence 344444443 6788999999999999999998765311 234567777787777655554 456
Q ss_pred cEEEEEecCC
Q 005956 414 TCHFYKASGN 423 (667)
Q Consensus 414 ~i~l~d~~~~ 423 (667)
..+.|+..-.
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 7777776543
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=85.22 E-value=53 Score=34.46 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=83.0
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEE-EecCCCeEeEEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRM-WQVGCNQCLNVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~i-Wd~~~~~~~~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
...+.++.+.+++.++..+..|.+.. ++ ..++.-... .....++++.+.+ ++..++.+ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 34678888889885556666665543 22 222222222 2445789999998 77766655 5676654334444432
Q ss_pred Eecc-----cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 386 DWAD-----VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 386 ~~~~-----~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
.... ....+.++.+.|++..+++ +.+|.+.. ....++ ........ .......+.+.|..++ ..++.+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~-tW~~~~~~---~~~~~~~~~~~~~~~~--~~~~~G 320 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGK-TWEKDPVG---EEVPSNFYKIVFLDPE--KGFVLG 320 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCC-CCeECCcC---CCCCcceEEEEEeCCC--ceEEEC
Confidence 2111 1234788899988775554 45665543 222221 11111100 0112357777877653 556677
Q ss_pred CCCcEEEEEC
Q 005956 461 EDSKLRILDG 470 (667)
Q Consensus 461 ~dg~I~iwd~ 470 (667)
..|.|..|+.
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 7788877763
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=37 Score=32.57 Aligned_cols=175 Identities=10% Similarity=0.065 Sum_probs=90.2
Q ss_pred eEEEEeCC--CcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEE
Q 005956 322 YLLSCSMD--KTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAIC 398 (667)
Q Consensus 322 ~l~s~s~D--g~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~ 398 (667)
++.+.+.- ..|++||+.+++.+...... ..+..--.....+.+....-.+|.-..+|.++-+.+......+.=..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 55565543 36999999999887765422 2222111111022233334467888899988877665444455444544
Q ss_pred EeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCC--------CeEEEEEeCCCcEEEE-
Q 005956 399 YIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE--------SQRIMITSEDSKLRIL- 468 (667)
Q Consensus 399 ~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g--------~~~l~~~s~dg~I~iw- 468 (667)
.|++.|+.+....++++-|..+...... ++...+... ..++.+.|-... ...+-.--..|.|.-|
T Consensus 138 --~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv---~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 138 --SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPV---SKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred --cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeec---ccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 4566677776666777777766554433 333333211 222333333210 0111122233444333
Q ss_pred ECCcceeeEEe-CCCCCCeEEEEEcCCC-CEEEEE
Q 005956 469 DGVDVIHKFKG-LPKSGSQMSASFTTTG-KHIISI 501 (667)
Q Consensus 469 d~~~~~~~~~~-~~~~~~v~~v~~spdg-~~l~sg 501 (667)
|+......... ..+....+.+++.|++ +++++|
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44333222222 1244567788998887 555555
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.92 E-value=41 Score=38.32 Aligned_cols=175 Identities=14% Similarity=0.259 Sum_probs=88.1
Q ss_pred cccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE--ee---CCCcEEEEEEeeCCCCEEEEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD---HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~--~~---h~~~V~~l~f~p~d~~~l~sg 368 (667)
+++..+..+..+.-....+..+.|+.+..|+....||++++|++-.. .+.. .+ ....|..+.|.. +|-.+++
T Consensus 68 If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~-~GVavlt- 144 (829)
T KOG2280|consen 68 IFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFH-NGVAVLT- 144 (829)
T ss_pred EEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEec-CceEEEe-
Confidence 34445555555554444888999999889999999999999998632 2222 21 223455555544 4533333
Q ss_pred ecCCeEEE-EecCCCeEEEeccc---CCceEEEEEeeCCCEEE-EEecC--CcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 369 SIDGKVRI-WGVCEKRVVDWADV---RDVISAICYIPDGKGFI-VGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 369 s~Dg~v~i-wdl~~~~~~~~~~~---~~~v~~v~~spdg~~l~-~gs~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
.+|.+.+ -+..........+. .-.-+|-...+++.... ...-+ --..++...........+ .....
T Consensus 145 -~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~------~~~~~ 217 (829)
T KOG2280|consen 145 -VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL------SWPNS 217 (829)
T ss_pred -cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc------CCCCc
Confidence 3344443 33333222222221 11112222223321111 00111 001222222222211111 11126
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEe
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKG 479 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~ 479 (667)
.+..+..+|+. .+|+.-...|.|.+-+.. +..+.+..
T Consensus 218 ~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 218 SVVKISVSPNR-RFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred eEEEEEEcCCc-ceEEEEecCCcEEEEecchhhhhhccCC
Confidence 68889999984 788888899999887643 44444443
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.61 E-value=44 Score=32.30 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=68.0
Q ss_pred EEecCCCeEEEEeCCCcEEEEecC--CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---C---eEEEE-ecCCC---
Q 005956 315 LAWSNSNYLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G---KVRIW-GVCEK--- 382 (667)
Q Consensus 315 l~~s~~~~l~s~s~Dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g---~v~iw-dl~~~--- 382 (667)
++-...+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+|+++--.+ . .+|+| +.+..
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 333443444444566789999998 445677777778999999999 89999986432 2 56776 22111
Q ss_pred -eEE--Eec---------------------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 383 -RVV--DWA---------------------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 383 -~~~--~~~---------------------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
+.+ +.. .....+.+++..|-.-.|++|+ ++.+.+|.+.....
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 111 111 1234577888778544566665 45888888764433
No 451
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=55 Score=33.20 Aligned_cols=165 Identities=13% Similarity=0.149 Sum_probs=105.2
Q ss_pred EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEE
Q 005956 342 CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418 (667)
Q Consensus 342 ~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~ 418 (667)
.+..+...+-+..+.++ +++.+.+..+.-++|.|+.+... +......+.-. ++.-.|++..++..+.-+.++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay--gv~vsGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY--GVYVSGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE--EEEecCCEEEEeeccCcEEEE
Confidence 33444456667778885 57888888888899999987542 22333333333 444568899998877778889
Q ss_pred EecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCCCC-CeEEEEEcCCCC
Q 005956 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPKSG-SQMSASFTTTGK 496 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~v~~v~~spdg~ 496 (667)
|+.+...+...-.. ......-..++.+. ++...+..|+-+.|.|+.+. ..++.+..+.+ .+.++..+++..
T Consensus 154 dvsdpssP~lagry----a~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 154 DVSDPSSPQLAGRY----ALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred ECCCCCCceeeeee----ccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee
Confidence 99876655432111 11123335566664 47777788999999997743 23444443444 677888887766
Q ss_pred EEEEEeCCCcEEEEEcCCCCcccc
Q 005956 497 HIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 497 ~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
|++... --+.+-|..+...++.
T Consensus 227 y~vvy~--egvlivd~s~~ssp~~ 248 (370)
T COG5276 227 YLVVYD--EGVLIVDVSGPSSPTV 248 (370)
T ss_pred EEEEcc--cceEEEecCCCCCceE
Confidence 666553 4477788887765544
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.85 E-value=65 Score=33.64 Aligned_cols=147 Identities=17% Similarity=0.229 Sum_probs=80.3
Q ss_pred CcEEEEEEeeCCCCEEEEEecCCe------EEEEecCC-----CeE-----EEecccCC--------ceEEEEEeeCCCE
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDGK------VRIWGVCE-----KRV-----VDWADVRD--------VISAICYIPDGKG 405 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg~------v~iwdl~~-----~~~-----~~~~~~~~--------~v~~v~~spdg~~ 405 (667)
+.+..+.+.| ++..+++.+.++. +..+++.. ..+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567788887 5566666777777 66555543 111 11112111 3447888677766
Q ss_pred EEEEecC------CcEEEEEecCCcceeeeEeecc---------ccCcCCCCeEEEEEccCCCeEEEEEeC-----CC--
Q 005956 406 FIVGSIT------GTCHFYKASGNDLKLEKVDFHD---------RKKTSGNKITGIQFSRDESQRIMITSE-----DS-- 463 (667)
Q Consensus 406 l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~---------~~~~~~~~I~~l~~sp~g~~~l~~~s~-----dg-- 463 (667)
+++.=.+ ..|..++.. +.... .+.+.. .....+..+-+++++|+| +.|++... |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~-~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIR-RFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Ccccc-eEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence 6665455 577777766 33322 221111 122345778999999997 44444322 22
Q ss_pred c-------EEEE--ECCc---cee--eEEeCC-----CCCCeEEEEEcCCCCEEEE
Q 005956 464 K-------LRIL--DGVD---VIH--KFKGLP-----KSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 464 ~-------I~iw--d~~~---~~~--~~~~~~-----~~~~v~~v~~spdg~~l~s 500 (667)
. ++|+ |... ... .|.... ....+..+.+-+++++|+-
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4454 4332 122 222221 3567788888888887664
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.33 E-value=73 Score=33.88 Aligned_cols=149 Identities=10% Similarity=0.144 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee----CCCE--EEEEecC----CcEEEEEecCCcceeeeE
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP----DGKG--FIVGSIT----GTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp----dg~~--l~~gs~d----g~i~l~d~~~~~~~~~~~ 430 (667)
...+++....++-+.+||+..+.+..+. .+.++.+..-. +|+. |++++.. ..|++|.+.........+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4567777788888999999988776553 23455544322 4443 4455432 469999887433323222
Q ss_pred eeccc-cCcCCCCeEEEEEc--c-CCCeEEEEEeCCCcEEEEECC---------cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 431 DFHDR-KKTSGNKITGIQFS--R-DESQRIMITSEDSKLRILDGV---------DVIHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 431 ~~~~~-~~~~~~~I~~l~~s--p-~g~~~l~~~s~dg~I~iwd~~---------~~~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
.-... .......+..+++. + +|..++++...+|.+..|-+. +.++.|.. ...+-.|.......+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccCC
Confidence 11110 11122447788873 3 355688888999988777542 23455554 457888888888889
Q ss_pred EEEEeCCCcEEEEEcCC
Q 005956 498 IISIGDDCRVYVWNYDE 514 (667)
Q Consensus 498 l~sgs~Dg~I~iWd~~~ 514 (667)
|+.+-++.-|.-|+.+.
T Consensus 222 LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEETTTEEEEEESSC
T ss_pred EEEecCccEEEEEecCC
Confidence 99999987777777653
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.05 E-value=34 Score=30.38 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=63.1
Q ss_pred EEEeeCCCCEEEEEecCCeEEEEecCCC--------eEEEecccCCceEEEEEee-----CCCEEEEEecCCcEEEEEec
Q 005956 355 VQFNPIDDNYFISGSIDGKVRIWGVCEK--------RVVDWADVRDVISAICYIP-----DGKGFIVGSITGTCHFYKAS 421 (667)
Q Consensus 355 l~f~p~d~~~l~sgs~Dg~v~iwdl~~~--------~~~~~~~~~~~v~~v~~sp-----dg~~l~~gs~dg~i~l~d~~ 421 (667)
-.|.. ....|+.++.-++|.|++.... ..+........|++++-.+ +...|++|+. ..+..||+.
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 34544 3446788888899999987643 2445666778888887655 2356666664 589999998
Q ss_pred CCcceeeeEeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEEC
Q 005956 422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDG 470 (667)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~ 470 (667)
.+.-... +.-...|.++.+-.-+ ..-++..+.+..|.-||.
T Consensus 82 ~N~d~Fy--------ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 82 NNSDLFY--------KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred cCchhhh--------hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 7765432 1112446666552211 123444444455555553
No 455
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.98 E-value=58 Score=31.87 Aligned_cols=174 Identities=14% Similarity=0.241 Sum_probs=90.0
Q ss_pred eEEEEeCCCcEEEEecC--CCeEeEEe------eCCCcEEEEEEeeCCCCEEEEEec-C---------CeEEEEecCCCe
Q 005956 322 YLLSCSMDKTVRMWQVG--CNQCLNVF------DHHNYVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEKR 383 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~--~~~~~~~~------~h~~~V~~l~f~p~d~~~l~sgs~-D---------g~v~iwdl~~~~ 383 (667)
+.+.++..-.|--||.. .....+++ ........-..+| +++++. |.. | |.++.|-. .++
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~-GtMad~~~~le~~~g~Ly~~~~-~h~ 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYG-GTMADFGDDLEPIGGELYSWLA-GHQ 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceee-eeeccccccccccccEEEEecc-CCC
Confidence 44455544445557733 22333332 1233455666778 888743 332 1 33444432 223
Q ss_pred EEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEE--ecCCcceee--eEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 384 VVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYK--ASGNDLKLE--KVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 384 ~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d--~~~~~~~~~--~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
+......-..-+.++|+.+.+.+.. -+.+-.|.-|| ..++..... .+.+........-.--.++...+| ++.++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va 228 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVA 228 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEE
Confidence 3223333345577889887776654 44555676676 555544332 222221100000111234444554 67777
Q ss_pred EeCCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEc-CCCCEEEEE
Q 005956 459 TSEDSKLRILDGVDV--IHKFKGLPKSGSQMSASFT-TTGKHIISI 501 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~s-pdg~~l~sg 501 (667)
+-..++|...|..+. ...++. ....+++++|- ++-..+++.
T Consensus 229 ~~ng~~V~~~dp~tGK~L~eikl--Pt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKILLEIKL--PTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EecCcEEEEECCCCCcEEEEEEc--CCCceEEEEecCCCccEEEEE
Confidence 778889999997754 444444 57889999994 333344433
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.98 E-value=92 Score=33.54 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=76.9
Q ss_pred EEEEeeCCCCEEEEEecCCeEEEEecCCCe-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 354 ~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
.+...+ ++.+++.+..-..++-||--... ..........++++.+.++|..++++ ..|.+..-+-.........+..
T Consensus 243 ~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 243 TVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEE 320 (398)
T ss_pred eEEEcC-CCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceee
Confidence 344455 56555555433223333322211 11223345568899999998877665 5565443322211110001111
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
.. .......++.+.|.+++ .+++++..|.+....-. +.-.... ...-......+.|.++++-+++| .+|.|.-|
T Consensus 321 ~~-~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 321 AD-IKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cc-cCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 10 01122458999999875 56777777877766422 2111111 11124567789987776666555 57877655
No 457
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.13 E-value=14 Score=34.52 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=24.9
Q ss_pred cceEEEEecCCC-------eEEEEeCCCcEEEEecCC
Q 005956 310 GDVLDLAWSNSN-------YLLSCSMDKTVRMWQVGC 339 (667)
Q Consensus 310 ~~V~~l~~s~~~-------~l~s~s~Dg~I~iWd~~~ 339 (667)
..|.+++|||.| .|+..+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999844 688889999999997653
No 458
>PLN02153 epithiospecifier protein
Probab=78.93 E-value=89 Score=32.73 Aligned_cols=101 Identities=9% Similarity=0.210 Sum_probs=53.4
Q ss_pred eEEEEeCC-----CcEEEEecCCCeEeEEeeC-----CC--cEEEEEEeeCCCCEEEEEecC-----------CeEEEEe
Q 005956 322 YLLSCSMD-----KTVRMWQVGCNQCLNVFDH-----HN--YVTCVQFNPIDDNYFISGSID-----------GKVRIWG 378 (667)
Q Consensus 322 ~l~s~s~D-----g~I~iWd~~~~~~~~~~~h-----~~--~V~~l~f~p~d~~~l~sgs~D-----------g~v~iwd 378 (667)
+++.|+.+ ..+.+||..+.+-...-.. .. .-.+++.. ++++++.|+.+ ..|.+||
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEE
Confidence 55555543 3577888877654322111 11 11222222 56777777754 2477889
Q ss_pred cCCCeEEEecccC------CceEEEEEeeCCCEEEEEecC-------------CcEEEEEecCCcce
Q 005956 379 VCEKRVVDWADVR------DVISAICYIPDGKGFIVGSIT-------------GTCHFYKASGNDLK 426 (667)
Q Consensus 379 l~~~~~~~~~~~~------~~v~~v~~spdg~~l~~gs~d-------------g~i~l~d~~~~~~~ 426 (667)
..+.+-....... ... +++ .-+++.+++|+.+ ..+.+||..+.+..
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8877654432211 111 222 2366666665532 45788888876654
No 459
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.46 E-value=24 Score=38.02 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=40.4
Q ss_pred cccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 005956 208 EFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA 255 (667)
Q Consensus 208 ~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~ 255 (667)
...++.+...|......+.++..+|++++.|+...=|.|.++|+.++.
T Consensus 293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 335566777888888999999999999999998788999999998753
No 460
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.44 E-value=1.5e+02 Score=35.09 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=97.1
Q ss_pred ccccceEEEEec---C--CC--eEEEEeCCCcEEEEe------cCCC---------eEeEEee----CCCcEEEEEEeeC
Q 005956 307 GHKGDVLDLAWS---N--SN--YLLSCSMDKTVRMWQ------VGCN---------QCLNVFD----HHNYVTCVQFNPI 360 (667)
Q Consensus 307 gh~~~V~~l~~s---~--~~--~l~s~s~Dg~I~iWd------~~~~---------~~~~~~~----h~~~V~~l~f~p~ 360 (667)
.-..+|..|+|. . +. .++..-....+.|+. +... .++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 11 355555556677776 1111 2233333 3347789999998
Q ss_pred CCCEEEEEecCCeEEEEecCCCe------EEEeccc----------CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKR------VVDWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~------~~~~~~~----------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~ 424 (667)
+...|+.....|...|||+.... ....... .+.-..++|.++-+.|++++. ..+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 88899999999999999992211 1111111 122347889888788887664 478899998765
Q ss_pred ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
.....+ .......|..+.-+|.+..++++-.. ..|...|...
T Consensus 236 ~~~~l~-----~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLV-----TAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ccchhc-----cCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 422111 11123678888888874334333322 4566666554
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.13 E-value=46 Score=37.76 Aligned_cols=80 Identities=13% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEE
Q 005956 339 CNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFY 418 (667)
Q Consensus 339 ~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~ 418 (667)
+..|.+..+....+++++-+| .+..++++..||.|++|+....+...+-....+...+.|... .+++.+.|..+.-|
T Consensus 4 t~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh--gl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 4 TFDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH--GLVTATSDRRALAW 80 (1636)
T ss_pred cccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc--ceEEEeccchhhee
Confidence 334444445566788999999 999999999999999999866554333333333444555443 46777777777777
Q ss_pred Eec
Q 005956 419 KAS 421 (667)
Q Consensus 419 d~~ 421 (667)
.-.
T Consensus 81 ~~d 83 (1636)
T KOG3616|consen 81 KED 83 (1636)
T ss_pred ecc
Confidence 644
No 462
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.45 E-value=0.33 Score=54.97 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTS 253 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~ 253 (667)
|.-+-|-++.-|+..+-.++.|++-++..
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeech
Confidence 33344445667888888888888877664
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=23 Score=42.84 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~ 252 (667)
.....++|+|.-.+||.|...|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345678999999999999999999999665
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.98 E-value=0.35 Score=51.33 Aligned_cols=142 Identities=11% Similarity=0.184 Sum_probs=94.2
Q ss_pred EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-c
Q 005956 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V 390 (667)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~ 390 (667)
....|-+.+ -++.++.+..|..||-. ++.......+.....++|....+..++.+-..+.+.+||+.+....+... .
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 345566766 78888888888888865 33333344555666778877334455566778899999998754333211 1
Q ss_pred CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK 464 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~ 464 (667)
...-.-+.|++.+..++.|...|.+.+|+..+...... ...|..+++++++.+.+ +.+.++.|..
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv-------~Gkh~RRgtq~av~lEd--~vil~dcd~~ 181 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV-------MGKHQRRGTQIAVTLED--YVILCDCDNT 181 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhh-------hcccccceeEEEecccc--eeeecCcHHH
Confidence 11122267899999999999999999999876554322 12245789999999975 5666655543
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.69 E-value=1.7e+02 Score=34.71 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=77.0
Q ss_pred CCcceeeecc---ccceEEEEecCCC--eEEEEeCCCcEEEEecCCCe-----EeEEe-eCCC----------cEEEEEE
Q 005956 299 ESPLQELHGH---KGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQ-----CLNVF-DHHN----------YVTCVQF 357 (667)
Q Consensus 299 ~~~~~~l~gh---~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~-----~~~~~-~h~~----------~V~~l~f 357 (667)
..++.++..+ ..+..+++|+|.. .||.....|...||++.... .+... .+.+ .-..+.|
T Consensus 132 ~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W 211 (765)
T PF10214_consen 132 PNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILW 211 (765)
T ss_pred cceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEe
Confidence 3455555532 2467889999866 99999999999999992111 11111 1112 2336778
Q ss_pred eeCCCCEEEEEecCCeEEEEecCCCeEEE---ecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCC
Q 005956 358 NPIDDNYFISGSIDGKVRIWGVCEKRVVD---WADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 358 ~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~ 423 (667)
.+ +.+.|+.++ ...+.++|+.+..... .......|..+.-+|.. .++++-+ ...|...++...
T Consensus 212 ~~-~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 212 VS-DSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred cC-CCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 77 666777765 4678999999876533 33345668888888862 2333333 357777787763
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.66 E-value=18 Score=38.45 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=66.9
Q ss_pred eEEEEeCCCcEEEE-ecCCC-e----EeEEeeCC-CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce
Q 005956 322 YLLSCSMDKTVRMW-QVGCN-Q----CLNVFDHH-NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI 394 (667)
Q Consensus 322 ~l~s~s~Dg~I~iW-d~~~~-~----~~~~~~h~-~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v 394 (667)
-|+.+..||-|.-| |+..+ . .++.++.. .++..+.-.. +.+-|++-+..|++.++.....+.+-....-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 67888888888877 55432 2 22223322 3343333222 4566888888899988877666665544444567
Q ss_pred EEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 395 SAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 395 ~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
.-++++|.+.++++- ..|.++++.+.+...
T Consensus 361 ~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 361 QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 888999999888763 567899998876543
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.66 E-value=1.1e+02 Score=32.59 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=81.1
Q ss_pred CcEEEEecC--CCeEeEEee--------CCCcEEEEEEe--eCCCC-EEEEEecCCeEEEEecC---CC----eEEEecc
Q 005956 330 KTVRMWQVG--CNQCLNVFD--------HHNYVTCVQFN--PIDDN-YFISGSIDGKVRIWGVC---EK----RVVDWAD 389 (667)
Q Consensus 330 g~I~iWd~~--~~~~~~~~~--------h~~~V~~l~f~--p~d~~-~l~sgs~Dg~v~iwdl~---~~----~~~~~~~ 389 (667)
.+|++|.+. ++. +..+. ....++.+++. |.++. +++....+|.+..|-+. .+ ++++...
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 479999775 343 33322 11246666664 33444 66677788998888764 23 3455556
Q ss_pred cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee-eeEeeccccCcCCCCeEEEEEc--cCCCeEEEEEe-CCCcE
Q 005956 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFS--RDESQRIMITS-EDSKL 465 (667)
Q Consensus 390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~I~~l~~s--p~g~~~l~~~s-~dg~I 465 (667)
....+..+........|.+|-.+--|.-|+........ ..+.... .......|-.|++- .++..+|++++ .+++.
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 66788888888888899999999888888876333221 2221111 11123567777774 34444555555 56689
Q ss_pred EEEECC
Q 005956 466 RILDGV 471 (667)
Q Consensus 466 ~iwd~~ 471 (667)
.||+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999954
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=37 Score=41.16 Aligned_cols=158 Identities=13% Similarity=0.212 Sum_probs=88.8
Q ss_pred EEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEecccCCceEEEE--------EeeCCCEEEEEecCCcEEEEEecCC
Q 005956 353 TCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWADVRDVISAIC--------YIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 353 ~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~~~~~v~~v~--------~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
..+-+.|.=+..-+ +.|..+.+|+..++ +...+.+....|..|. |.|.=+++++-+.--.|.++-+.-.
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 33444442333333 36889999999884 4444555555555554 2233344555444455666655433
Q ss_pred cceeeeEeeccc--cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECC------cce-------------e-eEEe
Q 005956 424 DLKLEKVDFHDR--KKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGV------DVI-------------H-KFKG 479 (667)
Q Consensus 424 ~~~~~~~~~~~~--~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~------~~~-------------~-~~~~ 479 (667)
......-.+... ....+..|+++....+| .++.++.||.|+-. ... .+. . .++.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENG--RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCC--cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 222211111111 11224678889977776 56666677744422 111 010 0 0111
Q ss_pred C-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 480 L-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 480 ~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
. .+..+|..+++......+++-++.|+|.+|++..
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1 3566899999988888999999999999999977
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.98 E-value=89 Score=35.61 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=27.8
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS 253 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~ 253 (667)
..-++++.-+|.|+-++.+..||.|++|+...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 34577888899999999999999999999864
No 470
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.45 E-value=65 Score=34.63 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=67.9
Q ss_pred ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
...++|.++.|++|+ .|+.--.|++|.+++....+....+. .+..|....|.. ..-++..+..| +-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEc
Confidence 345699999999999 88888899999999986554443332 334588889986 34555555444 5555443
Q ss_pred C--CeEEEecccCCceEEEEEeeCCCEEEEEe
Q 005956 381 E--KRVVDWADVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 381 ~--~~~~~~~~~~~~v~~v~~spdg~~l~~gs 410 (667)
. ..+.-...+.-.|+-..|.++.+.++.++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2 33333455666778888888877665554
No 471
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.38 E-value=2e+02 Score=33.98 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=85.3
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE-------------EEEEee-CCCCEEEEEec----------CCeEEE
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT-------------CVQFNP-IDDNYFISGSI----------DGKVRI 376 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~-------------~l~f~p-~d~~~l~sgs~----------Dg~v~i 376 (667)
++++.++.|+.|.-.|.++|+.+..|.....|. .+.-.| ..+..++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 378888899999999999999988776443331 011111 02345666643 688999
Q ss_pred EecCCCeEEEeccc----------CC--------ce-EEEEEeeCCCEEEEEec------------------CCcEEEEE
Q 005956 377 WGVCEKRVVDWADV----------RD--------VI-SAICYIPDGKGFIVGSI------------------TGTCHFYK 419 (667)
Q Consensus 377 wdl~~~~~~~~~~~----------~~--------~v-~~v~~spdg~~l~~gs~------------------dg~i~l~d 419 (667)
+|+.+++++-.... .+ .+ ..+++++....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 99999987632111 00 01 23455555555555332 23455556
Q ss_pred ecCCcceeee-EeeccccC-cCCCCeEEEEEcc-CCC--eEEEEEeCCCcEEEEECCcceee
Q 005956 420 ASGNDLKLEK-VDFHDRKK-TSGNKITGIQFSR-DES--QRIMITSEDSKLRILDGVDVIHK 476 (667)
Q Consensus 420 ~~~~~~~~~~-~~~~~~~~-~~~~~I~~l~~sp-~g~--~~l~~~s~dg~I~iwd~~~~~~~ 476 (667)
+++++..... ...+..-. .......-+.+.. +|. ..++.++.+|.++++|-.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 6666654331 11110000 0011111222322 331 37888999999999997654433
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=73.22 E-value=35 Score=39.17 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCeEEEEecCC-------C---------e----EEEecccCCceEEEEEe--eCCCEEEEEecCCcEEEE
Q 005956 361 DDNYFISGSIDGKVRIWGVCE-------K---------R----VVDWADVRDVISAICYI--PDGKGFIVGSITGTCHFY 418 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~-------~---------~----~~~~~~~~~~v~~v~~s--pdg~~l~~gs~dg~i~l~ 418 (667)
+...|+.+..||.|.+|.+.+ . . +.........+..++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567889999999999996521 1 0 01122334567888888 778899999998888888
Q ss_pred EecCCcceeeeEeeccccCcCCCCeEEEEEccCC--C---eEEEEEeCCCcEEEEEC
Q 005956 419 KASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--S---QRIMITSEDSKLRILDG 470 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g--~---~~l~~~s~dg~I~iwd~ 470 (667)
-......... +.....+...|.+|.|-++. . ..|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFY----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccc----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7664321111 00011245678999997753 2 27888999999998876
No 473
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.43 E-value=2.1e+02 Score=33.83 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-------------------CCCCCCeEEEEEcCCCCEEEEE
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-------------------LPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-------------------~~~~~~v~~v~~spdg~~l~sg 501 (667)
+.|.+++...-+ .+++.+-.||.|.++|-.+....... .+....+..++|||++.-++.-
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 567777776664 68999999999999995432111000 0112244568899999999999
Q ss_pred eCCCcEE
Q 005956 502 GDDCRVY 508 (667)
Q Consensus 502 s~Dg~I~ 508 (667)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999865
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.57 E-value=1.2e+02 Score=33.25 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=60.6
Q ss_pred CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-cCCCCeEEEEEccCC-----CeEEEEEe-C--
Q 005956 391 RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKITGIQFSRDE-----SQRIMITS-E-- 461 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-~~~~~I~~l~~sp~g-----~~~l~~~s-~-- 461 (667)
-.....|+|.|||+.|++--..|.|++++..+..... ...+..... ........|+++|+= ..+|.+.. .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3457889999999766655446999999765443211 111111111 124678899999872 12344332 1
Q ss_pred -------CCcEEEEECC-------cceeeEEeCC--CCCCeEEEEEcCCCCEEEEEeCC
Q 005956 462 -------DSKLRILDGV-------DVIHKFKGLP--KSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 462 -------dg~I~iwd~~-------~~~~~~~~~~--~~~~v~~v~~spdg~~l~sgs~D 504 (667)
...|.-|.+. .....+.... ....-..+.|.|||.+.++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2234334332 1222333221 11234567899999877766654
No 475
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=69.90 E-value=1.5e+02 Score=31.06 Aligned_cols=41 Identities=5% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CeEEEEecCCCeEEEecccCC--ceEEEEEeeCCCEEEEEecC
Q 005956 372 GKVRIWGVCEKRVVDWADVRD--VISAICYIPDGKGFIVGSIT 412 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~--~v~~v~~spdg~~l~~gs~d 412 (667)
..+.+||..+.+-........ ........-+++.+++|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468889988876554332211 11222233467788887753
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.37 E-value=0.7 Score=49.20 Aligned_cols=132 Identities=14% Similarity=0.265 Sum_probs=90.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (667)
Q Consensus 227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (667)
...|-|.+.-|+.++.+-.+..||-.... ..+ .
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----------------------------------------------~le-~ 71 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----------------------------------------------ILE-L 71 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce----------------------------------------------ecc-c
Confidence 44566776668888888888888765310 000 1
Q ss_pred ccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEE-ee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 307 GHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNV-FD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 307 gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~-~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.-++...+++|..++ .++.+-..+.+.+||+.+...... ++ +.... +.|++ ....++.+...+.+.|++..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccc
Confidence 234556778888777 555677778999999976533221 12 22222 78888 777888888999999999988
Q ss_pred CeEEEecc-cCCceEEEEEeeCCCEEEE
Q 005956 382 KRVVDWAD-VRDVISAICYIPDGKGFIV 408 (667)
Q Consensus 382 ~~~~~~~~-~~~~v~~v~~spdg~~l~~ 408 (667)
.+.....+ |...++++++.+.+..+..
T Consensus 149 sR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 149 SRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hhhhhhhcccccceeEEEecccceeeec
Confidence 76655444 8888999999987755444
No 477
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.71 E-value=1.1e+02 Score=31.20 Aligned_cols=94 Identities=14% Similarity=0.296 Sum_probs=59.0
Q ss_pred CcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe------cCCeEEEEecCCCeEEEecc-----cCCceEEE
Q 005956 330 KTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWAD-----VRDVISAI 397 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs------~Dg~v~iwdl~~~~~~~~~~-----~~~~v~~v 397 (667)
..|++||..+.+-...-. -.+.|+.+.|.. +.++++.|. ....+..||+.+........ ..++|+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 358999988766554442 567899999985 566666664 34568899998887654433 34778888
Q ss_pred EEee-CCC-EEEEEe-cCCcEEEEEecCCc
Q 005956 398 CYIP-DGK-GFIVGS-ITGTCHFYKASGND 424 (667)
Q Consensus 398 ~~sp-dg~-~l~~gs-~dg~i~l~d~~~~~ 424 (667)
.+.. |+. ..+.|. .+|.-.|...+..+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7744 444 344443 34444444333333
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=67.86 E-value=24 Score=33.02 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.7
Q ss_pred ceEEEEEeeCC------CEEEEEecCCcEEEEEecCC
Q 005956 393 VISAICYIPDG------KGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 393 ~v~~v~~spdg------~~l~~gs~dg~i~l~d~~~~ 423 (667)
.+.+++|||.| -.|++.+.+|.+.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78999999954 36888999999999987754
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=67.41 E-value=77 Score=36.45 Aligned_cols=99 Identities=8% Similarity=0.095 Sum_probs=56.3
Q ss_pred EEEEEeeCCCCEEEEEecCC-----eEEEEecCC---CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956 353 TCVQFNPIDDNYFISGSIDG-----KVRIWGVCE---KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 353 ~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~---~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~ 424 (667)
..+.|-| .|..+++-..|| .|.++.-+. |..-...+....+..++|+-....++++ ..+.+.+|-..+..
T Consensus 250 ~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH 327 (1243)
T ss_pred hcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE
Confidence 3578999 899998877554 355554332 2222222333445666776655444443 35578899877655
Q ss_pred ceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 425 LKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 425 ~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
+-.+ .... ..|.-+.|+|...+.++..+.
T Consensus 328 WYLK~e~~i--------p~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 328 WYLKVERQI--------PGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred EEEEEeecC--------CCcceeeeccccCcEEEEecC
Confidence 4333 1111 345667788865455554443
No 480
>PLN02193 nitrile-specifier protein
Probab=66.60 E-value=2.1e+02 Score=31.59 Aligned_cols=101 Identities=11% Similarity=0.230 Sum_probs=55.5
Q ss_pred eEEEEeCC-----CcEEEEecCCCeEeEEeeC---CC--cEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCCeEEE
Q 005956 322 YLLSCSMD-----KTVRMWQVGCNQCLNVFDH---HN--YVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVD 386 (667)
Q Consensus 322 ~l~s~s~D-----g~I~iWd~~~~~~~~~~~h---~~--~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~~~~~ 386 (667)
+++.|+.+ ..+.++|+.+.+-...-.. .. .-.++... ++++++.|+.++ .+..||+.+.+-..
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 45555544 3577888887654432211 11 11222222 567777777543 46788888776543
Q ss_pred eccc------CCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcce
Q 005956 387 WADV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLK 426 (667)
Q Consensus 387 ~~~~------~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~ 426 (667)
.... +... .++ .-+++.+++|+.+ ..+.+||+.+....
T Consensus 309 ~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 309 CSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 2211 1111 122 2367777877755 45889998877654
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.20 E-value=38 Score=41.02 Aligned_cols=143 Identities=17% Similarity=0.257 Sum_probs=77.2
Q ss_pred EeCCCcEEEEecCCCeEeEEee-CCCcEEEEE--------EeeCCCCEEEEEecCCeEEEEecCC----CeE------EE
Q 005956 326 CSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--------FNPIDDNYFISGSIDGKVRIWGVCE----KRV------VD 386 (667)
Q Consensus 326 ~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~--------f~p~d~~~l~sgs~Dg~v~iwdl~~----~~~------~~ 386 (667)
.+-|+.+.+|+.+++.-...+. ....|..+. |.| .=++++.-..--.|.++-+.- +.. ..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 3567889999999865555553 333344332 222 222333333344566654322 111 11
Q ss_pred ecccCCceEEEEEeeCCCEEEEEecCCcEE--EEEecCCcce--eeeEe------------eccccCcCCCCeEEEEEcc
Q 005956 387 WADVRDVISAICYIPDGKGFIVGSITGTCH--FYKASGNDLK--LEKVD------------FHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 387 ~~~~~~~v~~v~~spdg~~l~~gs~dg~i~--l~d~~~~~~~--~~~~~------------~~~~~~~~~~~I~~l~~sp 450 (667)
+......|+++....+|+.+++|- ||.+. +|....+=.. ...+. +......+..+|..+....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 222345688899888887776654 55332 2222211000 00000 0010113456899999877
Q ss_pred CCCeEEEEEeCCCcEEEEECC
Q 005956 451 DESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~ 471 (667)
. ...+.+-+..|+|.+||+.
T Consensus 253 S-R~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 253 S-RNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred c-cceeeeeccCceEEEEEcc
Confidence 6 4788899999999999965
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=65.48 E-value=21 Score=23.80 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=20.4
Q ss_pred cccccEEEEEEcCCCCEEEEEEC-C--CcEEEE
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGE-D--GVVRIW 249 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~-D--g~I~vW 249 (667)
...+......|||||++|+-++. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45567788999999997776654 4 666665
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.67 E-value=1.5e+02 Score=30.21 Aligned_cols=97 Identities=7% Similarity=0.117 Sum_probs=60.1
Q ss_pred CeEEEEecCCCeEEEe-cccCCceEEEEEeeCCCEEEEEe------cCCcEEEEEecCCcceeeeEeecccc-CcCCCCe
Q 005956 372 GKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIVGS------ITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKI 443 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg~~l~~gs------~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I 443 (667)
..|++||..+.+-... ....+.|+++.|..+.+.++.|. ....+-.||+.+...... .... ..-.++|
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~----~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL----GGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec----CCcccccCCCcE
Confidence 4599999988886653 34678899999986666666654 345678888887654321 1100 1224778
Q ss_pred EEEEEccCCC-eEEEEEe-CCC--cEEEEECCc
Q 005956 444 TGIQFSRDES-QRIMITS-EDS--KLRILDGVD 472 (667)
Q Consensus 444 ~~l~~sp~g~-~~l~~~s-~dg--~I~iwd~~~ 472 (667)
+.+.+...+. ++.+.|. .++ .|..||..+
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 8888854333 4444443 233 567777553
No 484
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=64.47 E-value=1.5e+02 Score=35.89 Aligned_cols=146 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred CEEEEEEC---------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceee
Q 005956 235 RYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL 305 (667)
Q Consensus 235 ~~Latgs~---------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (667)
.|||.|.. -|.+.|+|+-. +.|..--......++.+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIe-----------------------------------VVPepgkP~t~~KlKel 1091 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIE-----------------------------------VVPEPGKPFTKNKLKEL 1091 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEE-----------------------------------ecCCCCCCcccceeeee
Q ss_pred e--ccccceEEEEecCCCeEEEEeCCCcEEEEec-CCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 306 H--GHKGDVLDLAWSNSNYLLSCSMDKTVRMWQV-GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 306 ~--gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~-~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
. .-++.|..++ .-+|+|+++..-+ |.||++ +....+..---.-++.-.+..- -.++|+.|.--..|.+.-....
T Consensus 1092 ~~eE~KGtVsavc-eV~G~l~~~~GqK-I~v~~l~r~~~ligVaFiD~~~yv~s~~~-vknlIl~gDV~ksisfl~fqee 1168 (1366)
T KOG1896|consen 1092 YIEEQKGTVSAVC-EVRGHLLSSQGQK-IIVRKLDRDSELIGVAFIDLPLYVHSMKV-VKNLILAGDVMKSISFLGFQEE 1168 (1366)
T ss_pred ehhhcccceEEEE-EeccEEEEccCcE-EEEEEeccCCcceeeEEeccceeEEehhh-hhhheehhhhhhceEEEEEccC
Q ss_pred eEEEecccCCc----eEEEEEeeCCC--EEEEEecCCcEEEE
Q 005956 383 RVVDWADVRDV----ISAICYIPDGK--GFIVGSITGTCHFY 418 (667)
Q Consensus 383 ~~~~~~~~~~~----v~~v~~spdg~--~l~~gs~dg~i~l~ 418 (667)
-..-..-.++. +.++.|--||. .++++..+++|++|
T Consensus 1169 p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1169 PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.88 E-value=2e+02 Score=30.52 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=21.0
Q ss_pred eEEEEecCCCeEEEecccCC-c--eEEEEEeeCCCEEEEEec
Q 005956 373 KVRIWGVCEKRVVDWADVRD-V--ISAICYIPDGKGFIVGSI 411 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~-~--v~~v~~spdg~~l~~gs~ 411 (667)
.+.+||..+.+-........ . -.++.. -+++.+++|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence 58889988877554332221 1 122222 35677777764
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.58 E-value=47 Score=37.52 Aligned_cols=28 Identities=36% Similarity=0.813 Sum_probs=24.9
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEee
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFD 347 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~ 347 (667)
+.+|++.+.|+++|+||+.+++++....
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3499999999999999999999987764
No 487
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.48 E-value=2.1e+02 Score=30.24 Aligned_cols=193 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCC---CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCC-ceE
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH---NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VIS 395 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~-~v~ 395 (667)
++.++.+..+|.|.-.|..++..+...... ..+.+-.+.. +++ ++.++.++.++.+|..+++.+-...... ...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Q ss_pred EEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeec-cccCcCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCc
Q 005956 396 AICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH-DRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGVD 472 (667)
Q Consensus 396 ~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~-~~~~~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~~ 472 (667)
.-..-.....+..++.+|.+.-.+..++......-... -.......++ ..++ .++.+.. ++.+.-.|..+
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-----~~~~--~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-----IASG--TVYVGSDGYDGILYALNAED 218 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-----eecc--eEEEecCCCcceEEEEEccC
Q ss_pred ceeeEE----eCCC------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc
Q 005956 473 VIHKFK----GLPK------SGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522 (667)
Q Consensus 473 ~~~~~~----~~~~------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 522 (667)
...... .... ...+..-..--++.. +.++.++.+...|..+++..+...
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEe
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.48 E-value=2.5e+02 Score=31.07 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=54.6
Q ss_pred EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccC---CceEEEEEeeCCCEEEEEec-------------CCcEEEE
Q 005956 355 VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVR---DVISAICYIPDGKGFIVGSI-------------TGTCHFY 418 (667)
Q Consensus 355 l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~---~~v~~v~~spdg~~l~~gs~-------------dg~i~l~ 418 (667)
+...+ ++.+++... ..++.+|+....+....-.. ..-..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~-nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-T-TS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcC-CCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 55566 777766544 78999998755333221111 11245667789999988872 1123444
Q ss_pred EecCCcceeeeEeeccccCc---------------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee
Q 005956 419 KASGNDLKLEKVDFHDRKKT---------------------SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 476 (667)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~---------------------~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~ 476 (667)
| .+++.. ..+.+..+... .=-.++++.+.+.+..+|+++-....|...|..+....
T Consensus 230 d-~tG~vv-~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVV-WEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EE-EEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEE-EEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 4 333322 22222222100 01347899999954466666666668888885543333
No 489
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.35 E-value=67 Score=35.12 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEE
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIW 249 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vW 249 (667)
.|..+..++.|..+|-+|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57888999999999999999965443
No 490
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=60.85 E-value=35 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=24.7
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF 357 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 357 (667)
.+++.-.+++|.++|..+++.+..+.-......+.|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344455688999999999888887764444444444
No 491
>PRK13613 lipoprotein LpqB; Provisional
Probab=60.34 E-value=1.5e+02 Score=33.82 Aligned_cols=154 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred cEEEEEEeeCCCCEEEEEecCC-eEEEEecCCCeE----EEecccCCceEEEEEeeCCCEEEEEec----CCcEEEEEec
Q 005956 351 YVTCVQFNPIDDNYFISGSIDG-KVRIWGVCEKRV----VDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKAS 421 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg-~v~iwdl~~~~~----~~~~~~~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~ 421 (667)
.+..++.++ ++..++....++ .+++..+..+.. .........++.-.|.++| .+.+... ...+++..-.
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~~ 441 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQGD 441 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcCC
Q ss_pred CCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE----------ECCcceeeEEeCCCCCCeEEEEE
Q 005956 422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL----------DGVDVIHKFKGLPKSGSQMSASF 491 (667)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw----------d~~~~~~~~~~~~~~~~v~~v~~ 491 (667)
..........+.+ ..|+.+..++||-+.+++...++.=+|| . ..+............+.+++|
T Consensus 442 G~~~~V~~~~l~g------~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W 514 (599)
T PRK13613 442 GEPVEVRTPELDG------HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSW 514 (599)
T ss_pred CcEEEeeccccCC------CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEE
Q ss_pred cCCCCEEEEEeCCC-cEEEEEcC
Q 005956 492 TTTGKHIISIGDDC-RVYVWNYD 513 (667)
Q Consensus 492 spdg~~l~sgs~Dg-~I~iWd~~ 513 (667)
..++.+++.+...+ ...+|.+.
T Consensus 515 ~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 515 AGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred cCCCEEEEEeccCCCCcceEEEe
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.07 E-value=84 Score=31.25 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=71.4
Q ss_pred EEEEecCCCeEEEecccC-CceEEEEEeeCCCEEEEEecC---CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 374 VRIWGVCEKRVVDWADVR-DVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~~~-~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
-.+||+.+++.....-.. --..+-.+-+||+.+.+|+.. ..+++|+.........-..... .-.....-.....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-DMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc-cccCCCccccceEC
Confidence 457888887766533222 122333567899999998752 3577887654111111000000 01112334456667
Q ss_pred cCCCeEEEEEeCCC-cEEEEECCc---ceeeEEe------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 450 RDESQRIMITSEDS-KLRILDGVD---VIHKFKG------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 450 p~g~~~l~~~s~dg-~I~iwd~~~---~~~~~~~------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
||| +.|++|+... ...+|.... ....+.. ......-..+...|+|+.++.+..++ .|||..+.+
T Consensus 127 ~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 127 PDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 787 5666666553 455555321 1111110 00112223455679999998887654 556777664
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.87 E-value=44 Score=37.71 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=41.8
Q ss_pred eCCCEEEEEecCCcEEEEEecC---CcceeeeEeeccc----------------cCcCCCCeEEEEEcc---CCCeEEEE
Q 005956 401 PDGKGFIVGSITGTCHFYKASG---NDLKLEKVDFHDR----------------KKTSGNKITGIQFSR---DESQRIMI 458 (667)
Q Consensus 401 pdg~~l~~gs~dg~i~l~d~~~---~~~~~~~~~~~~~----------------~~~~~~~I~~l~~sp---~g~~~l~~ 458 (667)
++...++++..||.+....... ............. ..........++.+. ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4777899999999988888765 1111111111110 011123455566655 23479999
Q ss_pred EeCCCcEEEEECCccee
Q 005956 459 TSEDSKLRILDGVDVIH 475 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~ 475 (667)
.+.|+++|+||+.+...
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999886544
No 494
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=59.50 E-value=20 Score=38.25 Aligned_cols=148 Identities=13% Similarity=0.051 Sum_probs=85.9
Q ss_pred cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE-EEEEccCCCeEEEEEeCCCcEEEE
Q 005956 390 VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT-GIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 390 ~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~-~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
....+..+-..|||+.+.+-+. ..+.++++.+..+...++.-.. .......|+ .+..-. |+.-+++++.||-|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds-pg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS-PGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcC-CCchHHHHHHHHHHHh-CceeEEEEcCCCceeee
Confidence 3456778889999999988765 6899999987665544221110 000011222 112122 45778889999999888
Q ss_pred -ECCcc-------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEE
Q 005956 469 -DGVDV-------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVA 540 (667)
Q Consensus 469 -d~~~~-------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~la 540 (667)
|.++. ++.++. ....+..+.-..+.+-+++-+..|++.++.-...+.......-.....+.|||.+.+++
T Consensus 296 Fdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence 43321 111111 12233333323344567777888888887765544433333334556778999988888
Q ss_pred Ee
Q 005956 541 VQ 542 (667)
Q Consensus 541 v~ 542 (667)
+.
T Consensus 374 ~e 375 (733)
T COG4590 374 SE 375 (733)
T ss_pred ee
Confidence 74
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=58.93 E-value=60 Score=38.22 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=55.6
Q ss_pred CCeEEEEecCCCeEEEe-cccCCceEEEEEeeCCCEEEE-EecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 371 DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDGKGFIV-GSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg~~l~~-gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
.+.|.+-|......... ......|.+-.|+|||+.|+. .+..+ .|.+-++.+.......+.... ..|
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~------aai 401 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN------AAI 401 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc------ccc
Confidence 35788888887766655 667788999999999999988 44333 478888887665544443332 566
Q ss_pred EEEEEccCCCeEEEE
Q 005956 444 TGIQFSRDESQRIMI 458 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~ 458 (667)
..-....+|...|+-
T Consensus 402 prwrv~e~gdt~ivy 416 (912)
T TIGR02171 402 PRWRVLENGDTVIVY 416 (912)
T ss_pred cceEecCCCCeEEEE
Confidence 666666666444443
No 496
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=1.8e+02 Score=28.11 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=37.4
Q ss_pred CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.+|.-.++|..+-+++..+...+.=+.++- |+.-|+.+....+++.-|..+
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHH
Confidence 457788899999999999987777788776 455566655556677666554
No 497
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=56.79 E-value=47 Score=27.09 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=33.0
Q ss_pred CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 005956 463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYVWNYDE 514 (667)
Q Consensus 463 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~~ 514 (667)
+.|..||..+......+ -...+.+.++|++++|+.++. .+.|++|....
T Consensus 36 ~~Vvyyd~~~~~~va~g---~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASG---FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEeecc---CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34555665544333332 355678899999999987764 57899998754
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=56.19 E-value=2.5e+02 Score=29.02 Aligned_cols=104 Identities=9% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCeE----EEecccCCce--EEEEEeeCCCEEEEEecC-----CcEEEEEecCCc
Q 005956 361 DDNYFISGSID-----GKVRIWGVCEKRV----VDWADVRDVI--SAICYIPDGKGFIVGSIT-----GTCHFYKASGND 424 (667)
Q Consensus 361 d~~~l~sgs~D-----g~v~iwdl~~~~~----~~~~~~~~~v--~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~ 424 (667)
++.+++.|+.+ ..+..||+.+.+. .......... .+++ .-+++.++.|+.. ..+..||+.++.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3577788877653 2222211111 1222 2356777777642 357888888766
Q ss_pred ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCc
Q 005956 425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVD 472 (667)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg----~I~iwd~~~ 472 (667)
..... .+... .........-+ .++++.|+.++ .+.+||..+
T Consensus 151 W~~~~-~~p~~-----~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 151 WFELP-DFPGE-----PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred eeECC-CCCCC-----CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCC
Confidence 54221 11110 11111112223 36777777654 356778654
No 499
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.78 E-value=2.5e+02 Score=28.90 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=74.8
Q ss_pred eEEEEeCCCcEEEEecCCCeE-----eEEee--CCCcE-EEEEEeeC-CCCEEEEEe-cCCeEEEEecCCCeEEE---ec
Q 005956 322 YLLSCSMDKTVRMWQVGCNQC-----LNVFD--HHNYV-TCVQFNPI-DDNYFISGS-IDGKVRIWGVCEKRVVD---WA 388 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~-----~~~~~--h~~~V-~~l~f~p~-d~~~l~sgs-~Dg~v~iwdl~~~~~~~---~~ 388 (667)
.++.++.||+|.-|.-.-+.. ...+. ....| ..+++... .+++|+.+. ..++|.+||-.-.++.. +.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 578899999999998532222 12222 12333 34555431 245555544 56889999865443221 11
Q ss_pred cc----C------------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC-
Q 005956 389 DV----R------------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD- 451 (667)
Q Consensus 389 ~~----~------------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~- 451 (667)
+. . -.|+-..-.++++.=+.|..-|.|.+||+...-+.. +.-.+ ....-..|+..|-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r--~as~g----~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR--VASSG----RLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE--eccCC----cccCCceeeeChhh
Confidence 00 0 001111222233333334455789999987543321 11111 1233455665443
Q ss_pred ----CCeEEEEEeCCCcEEEEECCc
Q 005956 452 ----ESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 452 ----g~~~l~~~s~dg~I~iwd~~~ 472 (667)
.+.+|+---.||+|..||...
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCC
Confidence 124566666799999999653
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=54.92 E-value=43 Score=22.17 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCeEEEEEeCC--CcEEEE
Q 005956 441 NKITGIQFSRDESQRIMITSED--SKLRIL 468 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~d--g~I~iw 468 (667)
.......|+|||..+++++..+ |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 5678899999997777777777 766665
Done!