Query 005956
Match_columns 667
No_of_seqs 975 out of 4189
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.8E-40 6E-45 359.1 38.8 368 121-544 3-400 (410)
2 1nr0_A Actin interacting prote 100.0 1E-39 3.5E-44 371.6 43.1 409 213-659 50-608 (611)
3 2ynn_A Coatomer subunit beta'; 100.0 3.4E-38 1.1E-42 326.8 38.9 281 212-544 3-292 (304)
4 3ow8_A WD repeat-containing pr 100.0 4.1E-37 1.4E-41 321.5 37.5 279 215-545 25-311 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 7.6E-37 2.6E-41 321.9 38.3 282 212-511 45-340 (340)
6 2pbi_B Guanine nucleotide-bind 100.0 4.8E-36 1.6E-40 317.8 40.4 285 212-511 54-354 (354)
7 2ymu_A WD-40 repeat protein; u 100.0 1.7E-36 5.9E-41 341.5 39.3 408 214-660 49-537 (577)
8 4g56_B MGC81050 protein; prote 100.0 6E-37 2.1E-41 325.1 31.8 280 218-544 38-332 (357)
9 4gqb_B Methylosome protein 50; 100.0 8.1E-37 2.8E-41 322.3 32.5 282 219-541 27-316 (344)
10 3frx_A Guanine nucleotide-bind 100.0 6.8E-36 2.3E-40 311.7 38.7 284 212-546 7-308 (319)
11 3iz6_a 40S ribosomal protein R 100.0 2.2E-36 7.5E-41 323.5 34.8 298 210-516 54-377 (380)
12 2ymu_A WD-40 repeat protein; u 100.0 6.6E-36 2.3E-40 336.7 37.7 391 214-659 172-577 (577)
13 4ery_A WD repeat-containing pr 100.0 5E-35 1.7E-39 303.4 40.9 279 212-543 13-298 (312)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-35 1.8E-39 308.5 39.7 282 212-543 5-323 (345)
15 2xzm_R RACK1; ribosome, transl 100.0 4.5E-35 1.5E-39 308.6 38.9 284 212-544 11-329 (343)
16 3ow8_A WD repeat-containing pr 100.0 8E-35 2.7E-39 304.1 36.1 245 215-513 73-320 (321)
17 1nr0_A Actin interacting prote 100.0 1.1E-34 3.9E-39 330.0 40.5 285 213-544 181-600 (611)
18 4gqb_B Methylosome protein 50; 100.0 1.1E-34 3.8E-39 305.9 36.2 248 220-517 80-334 (344)
19 2pm7_B Protein transport prote 100.0 1.6E-34 5.3E-39 298.2 36.3 251 216-514 3-285 (297)
20 1vyh_C Platelet-activating fac 100.0 4.4E-35 1.5E-39 316.7 33.7 246 213-512 141-409 (410)
21 1erj_A Transcriptional repress 100.0 6.1E-34 2.1E-38 305.9 38.5 295 220-544 62-378 (393)
22 2hes_X YDR267CP; beta-propelle 100.0 1E-33 3.5E-38 296.7 37.5 281 212-544 4-317 (330)
23 3mkq_A Coatomer beta'-subunit; 100.0 6.4E-34 2.2E-38 333.9 36.6 279 212-543 3-291 (814)
24 3frx_A Guanine nucleotide-bind 100.0 2.8E-33 9.4E-38 292.0 36.1 246 215-515 58-318 (319)
25 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-33 1.3E-37 342.6 42.4 396 215-659 608-1155(1249)
26 3zwl_B Eukaryotic translation 100.0 1.4E-32 4.8E-37 289.8 40.1 280 212-545 22-336 (369)
27 4g56_B MGC81050 protein; prote 100.0 2.4E-33 8.2E-38 297.4 33.3 249 217-515 89-344 (357)
28 2xzm_R RACK1; ribosome, transl 100.0 3.1E-33 1.1E-37 294.5 33.4 246 215-515 69-341 (343)
29 4aow_A Guanine nucleotide-bind 100.0 3E-32 1E-36 284.7 39.7 283 212-545 28-327 (340)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-32 4.1E-37 290.4 36.2 256 218-518 57-339 (345)
31 3bg1_A Protein SEC13 homolog; 100.0 9.3E-34 3.2E-38 295.2 27.0 248 216-513 7-292 (316)
32 1gxr_A ESG1, transducin-like e 100.0 5.1E-32 1.7E-36 282.0 39.7 273 219-545 48-327 (337)
33 2pm9_A Protein WEB1, protein t 100.0 1.7E-33 6E-38 302.9 29.4 280 221-545 11-327 (416)
34 1erj_A Transcriptional repress 100.0 9E-33 3.1E-37 296.8 34.8 250 220-515 121-390 (393)
35 2hes_X YDR267CP; beta-propelle 100.0 1.1E-32 3.9E-37 288.7 34.3 254 220-514 56-328 (330)
36 3ei3_B DNA damage-binding prot 100.0 1.5E-32 5E-37 293.2 34.6 282 211-543 62-371 (383)
37 3jrp_A Fusion protein of prote 100.0 1.9E-32 6.4E-37 290.2 34.3 255 214-515 3-288 (379)
38 3dm0_A Maltose-binding peripla 100.0 3E-32 1E-36 314.7 38.8 283 212-545 372-683 (694)
39 1pgu_A Actin interacting prote 100.0 5.2E-32 1.8E-36 306.5 39.9 398 213-659 54-611 (615)
40 2ynn_A Coatomer subunit beta'; 100.0 2.9E-32 1E-36 282.1 34.5 247 214-514 47-302 (304)
41 4e54_B DNA damage-binding prot 100.0 5.2E-33 1.8E-37 302.8 29.2 281 214-543 111-419 (435)
42 3dwl_C Actin-related protein 2 100.0 1.5E-33 5E-38 300.0 24.1 251 217-514 6-281 (377)
43 1r5m_A SIR4-interacting protei 100.0 3.1E-32 1.1E-36 293.0 33.9 300 219-545 42-415 (425)
44 4ery_A WD repeat-containing pr 100.0 8.2E-32 2.8E-36 279.1 35.8 249 214-513 57-311 (312)
45 3f3f_A Nucleoporin SEH1; struc 100.0 5E-32 1.7E-36 282.3 34.1 257 214-517 3-340 (351)
46 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-32 1.8E-36 332.7 39.2 399 213-659 734-1246(1249)
47 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-32 4E-37 325.9 31.9 191 218-426 13-246 (902)
48 3dw8_B Serine/threonine-protei 100.0 5.4E-32 1.9E-36 294.3 32.8 288 220-545 26-437 (447)
49 1k8k_C P40, ARP2/3 complex 41 100.0 1.6E-31 5.4E-36 282.8 34.9 252 217-514 3-274 (372)
50 3mmy_A MRNA export factor; mRN 100.0 1.5E-31 5.1E-36 281.8 34.4 282 212-546 29-337 (368)
51 3i2n_A WD repeat-containing pr 100.0 1.1E-31 3.8E-36 282.1 32.8 285 215-516 11-355 (357)
52 1sq9_A Antiviral protein SKI8; 100.0 1.4E-31 4.7E-36 286.4 31.8 275 214-536 8-366 (397)
53 2pm9_A Protein WEB1, protein t 100.0 5E-32 1.7E-36 291.5 28.5 252 220-517 65-340 (416)
54 3vl1_A 26S proteasome regulato 100.0 1E-31 3.5E-36 289.9 30.6 273 216-543 92-408 (420)
55 4h5i_A Guanine nucleotide-exch 100.0 4.4E-31 1.5E-35 280.8 34.6 203 307-516 131-345 (365)
56 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-30 5.1E-35 268.2 37.3 271 211-542 7-284 (313)
57 3v7d_B Cell division control p 100.0 1.4E-30 4.8E-35 285.3 38.5 272 213-543 112-410 (464)
58 1yfq_A Cell cycle arrest prote 100.0 2.3E-31 7.8E-36 278.4 30.6 276 217-546 6-314 (342)
59 2j04_B YDR362CP, TAU91; beta p 100.0 6.6E-32 2.3E-36 299.8 27.3 203 303-515 201-429 (524)
60 1gxr_A ESG1, transducin-like e 100.0 2.8E-30 9.5E-35 268.8 37.6 239 220-512 95-335 (337)
61 3k26_A Polycomb protein EED; W 100.0 2.5E-31 8.6E-36 280.1 29.9 284 217-545 13-356 (366)
62 1got_B GT-beta; complex (GTP-b 100.0 7.8E-31 2.7E-35 275.9 32.8 280 300-595 46-335 (340)
63 4a11_B DNA excision repair pro 100.0 3.2E-30 1.1E-34 275.9 37.5 273 212-517 33-368 (408)
64 3vl1_A 26S proteasome regulato 100.0 1.4E-31 4.8E-36 288.8 25.9 273 223-545 57-355 (420)
65 3dm0_A Maltose-binding peripla 100.0 2E-30 6.8E-35 299.4 35.4 244 215-514 423-693 (694)
66 3k26_A Polycomb protein EED; W 100.0 6.7E-31 2.3E-35 276.9 28.6 246 220-514 67-366 (366)
67 3gre_A Serine/threonine-protei 100.0 7E-31 2.4E-35 285.4 29.3 259 213-519 53-364 (437)
68 3jro_A Fusion protein of prote 100.0 7.6E-31 2.6E-35 305.5 30.2 255 215-516 2-287 (753)
69 4aow_A Guanine nucleotide-bind 100.0 1.7E-29 5.7E-34 263.8 35.2 248 214-516 78-339 (340)
70 2pbi_B Guanine nucleotide-bind 100.0 7.1E-30 2.4E-34 270.2 32.6 282 300-595 55-349 (354)
71 1sq9_A Antiviral protein SKI8; 100.0 2.7E-30 9.3E-35 276.3 29.7 258 214-515 54-396 (397)
72 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-30 1.2E-34 302.3 32.0 355 213-659 46-457 (814)
73 3zwl_B Eukaryotic translation 100.0 2.6E-29 8.8E-34 264.8 35.6 244 302-547 25-282 (369)
74 1pgu_A Actin interacting prote 100.0 4.8E-30 1.6E-34 290.4 31.6 275 219-546 15-319 (615)
75 3v7d_B Cell division control p 100.0 4.5E-29 1.5E-33 273.3 37.3 271 213-546 153-453 (464)
76 1r5m_A SIR4-interacting protei 100.0 9.6E-30 3.3E-34 273.5 31.4 271 219-514 105-425 (425)
77 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-29 4E-34 300.2 34.5 370 220-600 56-659 (902)
78 3ei3_B DNA damage-binding prot 100.0 1.3E-29 4.3E-34 270.4 31.3 247 219-514 115-382 (383)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 4.6E-30 1.6E-34 276.1 27.8 256 215-516 74-344 (402)
80 3iz6_a 40S ribosomal protein R 100.0 2.4E-30 8E-35 276.6 25.3 292 300-599 57-372 (380)
81 4aez_A CDC20, WD repeat-contai 100.0 3.6E-29 1.2E-33 269.2 33.8 243 220-518 132-384 (401)
82 2xyi_A Probable histone-bindin 100.0 2.1E-29 7.3E-34 273.8 31.6 258 217-515 123-411 (430)
83 4aez_A CDC20, WD repeat-contai 100.0 4E-29 1.4E-33 268.9 33.3 270 218-545 87-370 (401)
84 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-28 5.2E-33 253.1 35.0 250 213-518 50-300 (313)
85 1k8k_C P40, ARP2/3 complex 41 100.0 4.2E-29 1.4E-33 264.2 31.3 251 214-517 44-364 (372)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-28 1.2E-32 265.2 39.1 299 213-546 109-429 (445)
87 2pm7_B Protein transport prote 100.0 1E-28 3.4E-33 254.6 33.0 239 302-545 2-275 (297)
88 3dwl_C Actin-related protein 2 100.0 5.2E-30 1.8E-34 272.5 23.9 252 213-512 46-377 (377)
89 4e54_B DNA damage-binding prot 100.0 2.3E-29 7.8E-34 273.9 27.8 290 302-601 112-429 (435)
90 4gga_A P55CDC, cell division c 100.0 2.1E-28 7.2E-33 265.0 33.5 244 217-516 142-397 (420)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 9.5E-29 3.3E-33 265.8 30.3 270 224-541 36-330 (402)
92 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-29 1.1E-33 272.8 26.6 287 220-545 13-351 (588)
93 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-29 4.2E-34 281.6 23.1 285 216-544 201-506 (524)
94 4gga_A P55CDC, cell division c 100.0 1.5E-27 5E-32 258.4 37.6 269 224-544 107-384 (420)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-27 3.6E-32 262.0 33.0 311 222-543 4-373 (450)
96 4ggc_A P55CDC, cell division c 100.0 7.7E-27 2.6E-31 241.1 37.8 268 225-544 28-304 (318)
97 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-27 8.9E-32 257.6 35.0 232 219-516 130-367 (435)
98 4ggc_A P55CDC, cell division c 100.0 3.5E-27 1.2E-31 243.7 33.3 244 217-515 62-316 (318)
99 3vu4_A KMHSV2; beta-propeller 100.0 2.7E-27 9.3E-32 250.5 32.6 244 216-516 13-273 (355)
100 3bg1_A Protein SEC13 homolog; 100.0 3.8E-28 1.3E-32 252.7 25.5 239 303-545 7-283 (316)
101 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-27 4.1E-32 260.2 29.7 244 212-520 163-420 (435)
102 3jrp_A Fusion protein of prote 100.0 3.3E-27 1.1E-31 249.8 31.3 240 300-545 2-277 (379)
103 3gre_A Serine/threonine-protei 100.0 8.3E-28 2.8E-32 261.1 25.9 252 220-511 109-437 (437)
104 3lrv_A PRE-mRNA-splicing facto 100.0 5.7E-28 1.9E-32 254.1 23.6 234 228-517 42-295 (343)
105 1yfq_A Cell cycle arrest prote 100.0 2.6E-27 8.9E-32 247.5 27.7 243 216-511 50-321 (342)
106 4gq1_A NUP37; propeller, trans 100.0 4.3E-28 1.5E-32 260.3 21.9 255 218-513 85-388 (393)
107 3dw8_B Serine/threonine-protei 100.0 6.1E-27 2.1E-31 254.4 29.6 288 214-513 73-445 (447)
108 4a11_B DNA excision repair pro 100.0 6.7E-27 2.3E-31 250.0 28.7 329 299-661 33-404 (408)
109 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-26 1.8E-30 247.8 36.0 273 212-515 149-443 (445)
110 3bws_A Protein LP49; two-domai 100.0 4.9E-26 1.7E-30 246.5 33.9 280 216-546 117-422 (433)
111 3mmy_A MRNA export factor; mRN 100.0 3.5E-26 1.2E-30 240.6 29.9 249 216-514 80-346 (368)
112 3f3f_A Nucleoporin SEH1; struc 99.9 1.5E-25 5.1E-30 233.2 32.1 213 303-515 5-250 (351)
113 3i2n_A WD repeat-containing pr 99.9 3.7E-26 1.3E-30 239.9 24.3 293 302-601 11-352 (357)
114 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.5E-25 8.5E-30 243.1 31.2 249 216-514 96-391 (450)
115 1l0q_A Surface layer protein; 99.9 6.8E-25 2.3E-29 234.1 33.6 247 215-519 25-280 (391)
116 4gq1_A NUP37; propeller, trans 99.9 5E-26 1.7E-30 244.2 23.4 240 306-546 86-381 (393)
117 1l0q_A Surface layer protein; 99.9 1.4E-24 4.7E-29 231.8 34.1 256 235-546 3-265 (391)
118 3jro_A Fusion protein of prote 99.9 2.2E-25 7.5E-30 259.4 29.9 237 302-544 2-274 (753)
119 4h5i_A Guanine nucleotide-exch 99.9 2.2E-25 7.7E-30 236.7 26.5 198 219-471 130-342 (365)
120 3bws_A Protein LP49; two-domai 99.9 1.7E-24 5.9E-29 234.3 31.6 242 217-514 164-432 (433)
121 2xyi_A Probable histone-bindin 99.9 1.2E-24 4E-29 236.4 29.9 233 303-542 122-397 (430)
122 3lrv_A PRE-mRNA-splicing facto 99.9 5.3E-25 1.8E-29 231.4 23.8 243 222-514 76-333 (343)
123 2j04_A TAU60, YPL007P, hypothe 99.9 2.2E-24 7.5E-29 234.9 26.3 221 220-503 83-350 (588)
124 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-23 8.7E-28 224.8 27.6 261 216-534 111-407 (415)
125 2w18_A PALB2, fancn, partner a 99.9 1.8E-23 6.1E-28 214.5 24.8 198 306-512 133-355 (356)
126 3vu4_A KMHSV2; beta-propeller 99.9 8.8E-23 3E-27 215.8 29.9 227 300-545 10-261 (355)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.3E-23 1.1E-27 224.0 25.6 271 222-547 62-376 (415)
128 2w18_A PALB2, fancn, partner a 99.9 6.9E-23 2.3E-27 210.1 23.0 215 221-470 110-355 (356)
129 2ecf_A Dipeptidyl peptidase IV 99.9 4.9E-22 1.7E-26 230.7 26.6 292 222-547 36-402 (741)
130 1nir_A Nitrite reductase; hemo 99.9 5.7E-21 2E-25 213.3 32.5 281 212-545 169-500 (543)
131 1ri6_A Putative isomerase YBHE 99.9 7E-21 2.4E-25 198.3 30.6 248 220-513 35-307 (343)
132 2ojh_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 195.7 25.6 236 303-547 35-294 (297)
133 3vgz_A Uncharacterized protein 99.9 2.4E-20 8.3E-25 195.4 32.1 271 221-545 39-334 (353)
134 3u4y_A Uncharacterized protein 99.9 7E-20 2.4E-24 190.4 31.3 268 228-546 3-294 (331)
135 1k32_A Tricorn protease; prote 99.9 1.2E-20 4.2E-25 227.4 28.3 360 215-594 45-493 (1045)
136 3u4y_A Uncharacterized protein 99.9 8.6E-20 3E-24 189.8 30.4 252 216-518 34-308 (331)
137 1ri6_A Putative isomerase YBHE 99.9 1.3E-19 4.4E-24 188.6 29.8 237 307-547 35-299 (343)
138 1nir_A Nitrite reductase; hemo 99.9 1.4E-19 4.9E-24 201.9 30.6 305 230-589 145-495 (543)
139 2ojh_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 187.4 24.1 234 217-505 36-293 (297)
140 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-20 4.6E-25 217.9 22.9 272 224-546 18-381 (723)
141 2ecf_A Dipeptidyl peptidase IV 99.9 9.8E-20 3.4E-24 211.3 28.8 271 223-545 109-445 (741)
142 1xfd_A DIP, dipeptidyl aminope 99.8 1.3E-19 4.5E-24 209.5 29.0 280 215-547 50-432 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-19 4.9E-24 208.7 28.9 269 222-544 81-420 (706)
144 3hfq_A Uncharacterized protein 99.8 4.5E-19 1.5E-23 186.0 30.0 249 220-513 37-316 (347)
145 3o4h_A Acylamino-acid-releasin 99.8 6.9E-20 2.4E-24 206.6 25.0 261 221-546 20-303 (582)
146 1k32_A Tricorn protease; prote 99.8 1.8E-19 6E-24 217.3 27.5 270 216-545 197-492 (1045)
147 1pby_B Quinohemoprotein amine 99.8 8.1E-19 2.8E-23 182.1 24.0 251 235-543 2-298 (337)
148 1pby_B Quinohemoprotein amine 99.8 7.6E-19 2.6E-23 182.3 23.7 237 224-518 35-314 (337)
149 3pe7_A Oligogalacturonate lyas 99.8 1.1E-18 3.9E-23 185.5 23.5 280 216-547 24-373 (388)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-18 3.5E-23 189.7 23.1 259 221-513 35-332 (434)
151 3scy_A Hypothetical bacterial 99.8 4.8E-17 1.6E-21 171.5 33.3 249 221-517 48-342 (361)
152 1z68_A Fibroblast activation p 99.8 4.7E-19 1.6E-23 204.9 18.1 269 227-545 20-376 (719)
153 2z3z_A Dipeptidyl aminopeptida 99.8 4.4E-18 1.5E-22 196.3 25.9 259 217-516 115-437 (706)
154 3hfq_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 171.3 30.6 234 307-546 37-307 (347)
155 1jmx_B Amine dehydrogenase; ox 99.8 6.1E-18 2.1E-22 176.5 23.8 237 227-517 4-328 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 3.5E-17 1.2E-21 177.5 27.8 215 220-469 90-330 (434)
157 4a5s_A Dipeptidyl peptidase 4 99.8 4.6E-18 1.6E-22 197.4 21.3 271 224-545 18-383 (740)
158 3vgz_A Uncharacterized protein 99.8 1.1E-16 3.8E-21 167.4 29.1 227 223-505 89-335 (353)
159 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.5E-16 5.2E-21 168.4 25.2 248 221-515 38-342 (365)
160 1jmx_B Amine dehydrogenase; ox 99.7 4.5E-16 1.5E-20 162.3 23.7 218 314-543 4-313 (349)
161 3c5m_A Oligogalacturonate lyas 99.7 1E-16 3.4E-21 170.5 18.8 267 223-546 36-372 (396)
162 3scy_A Hypothetical bacterial 99.7 4.5E-15 1.5E-19 156.3 31.3 235 308-546 48-327 (361)
163 1q7f_A NHL, brain tumor CG1071 99.7 7.1E-15 2.4E-19 149.5 31.7 247 219-515 26-281 (286)
164 1z68_A Fibroblast activation p 99.7 1.8E-16 6.3E-21 183.1 20.7 269 224-545 61-430 (719)
165 2oiz_A Aromatic amine dehydrog 99.7 2.7E-15 9.3E-20 158.6 27.5 271 216-537 45-360 (361)
166 3o4h_A Acylamino-acid-releasin 99.7 4.9E-16 1.7E-20 175.0 22.5 235 217-514 58-315 (582)
167 1jof_A Carboxy-CIS,CIS-muconat 99.7 4.9E-15 1.7E-19 156.7 27.2 230 309-545 39-330 (365)
168 3azo_A Aminopeptidase; POP fam 99.7 2.3E-15 7.9E-20 172.1 25.4 248 216-517 17-328 (662)
169 3pe7_A Oligogalacturonate lyas 99.6 1.9E-14 6.6E-19 152.7 23.9 249 216-513 74-381 (388)
170 2dg1_A DRP35, lactonase; beta 99.6 3.7E-14 1.3E-18 147.4 24.5 265 223-544 6-299 (333)
171 4a5s_A Dipeptidyl peptidase 4 99.6 6.6E-14 2.3E-18 162.4 29.1 269 225-547 64-438 (740)
172 3fvz_A Peptidyl-glycine alpha- 99.6 1.1E-13 3.8E-18 144.1 28.0 265 222-515 23-323 (329)
173 3e5z_A Putative gluconolactona 99.6 5E-13 1.7E-17 136.6 28.5 240 216-516 21-288 (296)
174 2dg1_A DRP35, lactonase; beta 99.6 1.5E-12 5.1E-17 135.2 32.0 242 216-505 38-301 (333)
175 2gop_A Trilobed protease; beta 99.6 1.2E-12 4E-17 136.7 29.7 203 310-534 59-311 (347)
176 2xdw_A Prolyl endopeptidase; a 99.6 5.1E-13 1.8E-17 154.1 29.5 242 220-516 122-416 (710)
177 3c5m_A Oligogalacturonate lyas 99.6 1.7E-13 5.9E-18 145.4 21.2 252 227-517 85-387 (396)
178 2oiz_A Aromatic amine dehydrog 99.5 1.3E-12 4.5E-17 137.9 27.0 235 303-544 45-324 (361)
179 2gop_A Trilobed protease; beta 99.5 9.8E-13 3.4E-17 137.3 25.7 222 223-513 59-330 (347)
180 3azo_A Aminopeptidase; POP fam 99.5 4.7E-13 1.6E-17 152.9 24.7 204 308-517 128-372 (662)
181 1rwi_B Serine/threonine-protei 99.5 1.7E-12 5.8E-17 130.3 25.5 239 224-516 25-266 (270)
182 2bkl_A Prolyl endopeptidase; m 99.5 2.6E-13 8.8E-18 156.3 21.1 243 220-517 118-400 (695)
183 2z2n_A Virginiamycin B lyase; 99.5 5.4E-11 1.9E-15 120.7 35.1 267 218-543 10-284 (299)
184 3fvz_A Peptidyl-glycine alpha- 99.5 4.5E-12 1.5E-16 131.8 27.0 233 309-545 23-312 (329)
185 1q7f_A NHL, brain tumor CG1071 99.5 7.1E-12 2.4E-16 127.1 27.5 227 307-542 27-268 (286)
186 3dsm_A Uncharacterized protein 99.5 4.7E-12 1.6E-16 131.7 26.7 238 223-519 44-306 (328)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.8E-11 1.3E-15 123.1 29.4 247 220-515 15-300 (314)
188 1qks_A Cytochrome CD1 nitrite 99.4 1.1E-10 3.7E-15 130.1 33.9 259 232-544 165-459 (567)
189 2xdw_A Prolyl endopeptidase; a 99.4 1.6E-11 5.5E-16 141.6 27.6 229 307-543 122-398 (710)
190 3e5z_A Putative gluconolactona 99.4 2.1E-11 7.2E-16 124.4 25.3 228 300-545 18-277 (296)
191 2qc5_A Streptogramin B lactona 99.4 6.3E-10 2.2E-14 112.8 34.5 267 220-543 17-290 (300)
192 1yr2_A Prolyl oligopeptidase; 99.4 2.7E-11 9.4E-16 140.3 25.9 242 220-517 160-444 (741)
193 1qks_A Cytochrome CD1 nitrite 99.4 1.2E-10 4E-15 129.8 29.8 218 322-541 169-405 (567)
194 3dsm_A Uncharacterized protein 99.4 1.2E-10 4E-15 121.1 27.5 217 311-542 45-285 (328)
195 3no2_A Uncharacterized protein 99.4 8.8E-11 3E-15 118.9 25.2 210 233-502 4-231 (276)
196 2z2n_A Virginiamycin B lyase; 99.4 5.7E-10 1.9E-14 113.1 31.3 237 221-515 55-296 (299)
197 3no2_A Uncharacterized protein 99.4 4.9E-11 1.7E-15 120.8 23.1 219 318-545 3-233 (276)
198 2bkl_A Prolyl endopeptidase; m 99.4 3.2E-11 1.1E-15 138.7 24.5 225 307-543 118-381 (695)
199 2mad_H Methylamine dehydrogena 99.4 1.3E-09 4.5E-14 115.2 33.6 258 216-520 61-356 (373)
200 1rwi_B Serine/threonine-protei 99.3 1.6E-10 5.3E-15 115.8 24.5 224 311-544 25-253 (270)
201 1yr2_A Prolyl oligopeptidase; 99.3 3.9E-10 1.3E-14 130.6 27.5 226 307-543 160-425 (741)
202 3sjl_D Methylamine dehydrogena 99.3 4.6E-10 1.6E-14 117.9 24.9 277 212-535 69-384 (386)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.5E-09 5.1E-14 111.1 28.5 229 305-545 13-288 (314)
204 3iuj_A Prolyl endopeptidase; h 99.3 2.7E-10 9.3E-15 130.9 25.1 242 219-517 125-408 (693)
205 3g4e_A Regucalcin; six bladed 99.3 2.3E-09 8E-14 109.5 29.3 228 308-546 11-263 (297)
206 3hrp_A Uncharacterized protein 99.3 1.3E-09 4.5E-14 116.8 28.1 239 223-513 131-409 (409)
207 1xip_A Nucleoporin NUP159; bet 99.3 8.9E-11 3.1E-15 123.7 18.3 186 224-458 39-230 (388)
208 3g4e_A Regucalcin; six bladed 99.3 5.3E-09 1.8E-13 106.8 30.7 229 220-503 10-261 (297)
209 2mad_H Methylamine dehydrogena 99.3 1E-08 3.5E-13 108.3 33.1 221 314-543 70-337 (373)
210 3dr2_A Exported gluconolactona 99.3 1.4E-09 4.7E-14 111.6 25.7 234 217-511 39-303 (305)
211 3hrp_A Uncharacterized protein 99.2 1.9E-09 6.7E-14 115.5 26.9 232 310-545 131-400 (409)
212 2qc5_A Streptogramin B lactona 99.2 7.6E-09 2.6E-13 104.7 29.3 235 221-513 60-299 (300)
213 3c75_H MADH, methylamine dehyd 99.2 1.7E-09 5.8E-14 115.5 24.7 262 213-520 110-408 (426)
214 2ghs_A AGR_C_1268P; regucalcin 99.2 9.8E-09 3.3E-13 106.4 29.6 223 224-504 50-292 (326)
215 2ghs_A AGR_C_1268P; regucalcin 99.2 3.1E-08 1.1E-12 102.6 32.8 223 311-546 50-293 (326)
216 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.9E-14 114.3 21.5 261 223-544 17-310 (343)
217 3sjl_D Methylamine dehydrogena 99.2 4.1E-09 1.4E-13 110.6 24.7 259 228-541 38-348 (386)
218 3dr2_A Exported gluconolactona 99.1 1.4E-08 4.7E-13 104.1 25.0 228 300-544 35-296 (305)
219 1xip_A Nucleoporin NUP159; bet 99.1 9.7E-09 3.3E-13 108.2 22.8 133 220-408 86-230 (388)
220 3c75_H MADH, methylamine dehyd 99.0 1.5E-08 5.3E-13 108.1 22.6 224 314-545 122-391 (426)
221 3iuj_A Prolyl endopeptidase; h 99.0 8.7E-09 3E-13 118.3 20.7 225 307-544 126-390 (693)
222 2ece_A 462AA long hypothetical 99.0 1.4E-07 4.7E-12 99.8 27.2 190 312-502 140-399 (462)
223 1mda_H Methylamine dehydrogena 98.9 8.3E-09 2.8E-13 108.3 15.3 247 214-521 58-353 (368)
224 1npe_A Nidogen, entactin; glyc 98.8 6.5E-06 2.2E-10 82.1 31.2 200 310-519 36-243 (267)
225 2qe8_A Uncharacterized protein 98.8 1E-07 3.5E-12 99.4 17.2 233 220-511 64-318 (343)
226 2ece_A 462AA long hypothetical 98.8 6.3E-07 2.2E-11 94.8 22.4 218 319-543 93-399 (462)
227 1kb0_A Quinohemoprotein alcoho 98.8 7.1E-07 2.4E-11 101.8 24.4 209 329-541 189-536 (677)
228 1yiq_A Quinohemoprotein alcoho 98.7 1.2E-06 4.3E-11 100.0 25.1 212 328-543 181-537 (689)
229 1fwx_A Nitrous oxide reductase 98.7 4.4E-07 1.5E-11 99.3 19.8 222 319-549 99-412 (595)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.7 4.8E-06 1.6E-10 87.5 25.7 185 320-521 143-344 (376)
231 2hz6_A Endoplasmic reticulum t 98.7 1.2E-08 4.2E-13 107.7 5.4 220 233-516 8-238 (369)
232 2fp8_A Strictosidine synthase; 98.7 5.8E-06 2E-10 85.0 25.4 256 225-515 21-314 (322)
233 1mda_H Methylamine dehydrogena 98.7 3.1E-07 1.1E-11 96.3 15.7 214 322-543 34-332 (368)
234 2hz6_A Endoplasmic reticulum t 98.6 4.9E-09 1.7E-13 110.7 1.6 201 320-537 9-216 (369)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.1E-05 3.7E-10 84.8 27.4 189 320-521 103-303 (376)
236 2iwa_A Glutamine cyclotransfer 98.6 1E-05 3.5E-10 80.3 24.1 198 311-515 22-238 (266)
237 2iwa_A Glutamine cyclotransfer 98.6 8.6E-06 2.9E-10 80.9 23.5 208 215-472 12-237 (266)
238 1fwx_A Nitrous oxide reductase 98.6 1.3E-06 4.5E-11 95.5 18.8 234 232-516 99-433 (595)
239 3nol_A Glutamine cyclotransfer 98.5 2.3E-05 7.8E-10 77.0 22.4 194 302-504 34-245 (262)
240 2p4o_A Hypothetical protein; p 98.5 0.0002 6.7E-09 72.9 30.6 226 223-505 32-279 (306)
241 2p4o_A Hypothetical protein; p 98.4 7.8E-05 2.7E-09 75.9 26.2 228 310-545 32-278 (306)
242 3hxj_A Pyrrolo-quinoline quino 98.4 3.8E-06 1.3E-10 86.1 16.4 202 320-542 107-312 (330)
243 1kb0_A Quinohemoprotein alcoho 98.4 1E-05 3.6E-10 92.1 21.5 220 320-542 128-494 (677)
244 3qqz_A Putative uncharacterize 98.4 0.00018 6.1E-09 70.9 27.2 207 304-513 21-252 (255)
245 4a2l_A BT_4663, two-component 98.4 0.0004 1.4E-08 80.7 34.9 266 225-542 175-469 (795)
246 1k3i_A Galactose oxidase precu 98.4 2E-05 6.9E-10 89.5 23.3 233 312-546 245-532 (656)
247 3nok_A Glutaminyl cyclase; bet 98.4 4.7E-05 1.6E-09 74.8 22.1 184 225-459 57-253 (268)
248 3hxj_A Pyrrolo-quinoline quino 98.4 1.2E-05 4E-10 82.4 18.5 186 311-515 138-325 (330)
249 1yiq_A Quinohemoprotein alcoho 98.4 3.4E-05 1.2E-09 88.1 23.4 152 320-474 121-340 (689)
250 2fp8_A Strictosidine synthase; 98.3 0.00027 9.1E-09 72.4 27.7 192 310-513 19-268 (322)
251 3nok_A Glutaminyl cyclase; bet 98.3 6.6E-05 2.3E-09 73.7 21.6 185 310-503 55-254 (268)
252 3mbr_X Glutamine cyclotransfer 98.3 0.00019 6.6E-09 69.8 24.4 195 302-503 12-223 (243)
253 1npe_A Nidogen, entactin; glyc 98.3 0.00062 2.1E-08 67.5 29.1 218 223-496 36-263 (267)
254 3nol_A Glutamine cyclotransfer 98.3 0.0001 3.4E-09 72.5 21.6 194 215-461 34-244 (262)
255 4a2l_A BT_4663, two-component 98.3 0.00098 3.4E-08 77.4 34.1 226 310-542 263-515 (795)
256 3v64_C Agrin; beta propeller, 98.3 0.00097 3.3E-08 69.3 30.1 199 310-517 73-278 (349)
257 2ad6_A Methanol dehydrogenase 98.2 0.00011 3.7E-09 81.9 23.6 222 320-545 160-527 (571)
258 1kv9_A Type II quinohemoprotei 98.2 4.7E-05 1.6E-09 86.6 20.9 211 329-543 177-520 (668)
259 3mbr_X Glutamine cyclotransfer 98.2 0.00038 1.3E-08 67.7 23.9 187 223-459 21-222 (243)
260 3v65_B Low-density lipoprotein 98.2 0.00089 3E-08 70.6 28.9 199 310-517 116-321 (386)
261 3tc9_A Hypothetical hydrolase; 98.1 0.0007 2.4E-08 72.5 26.6 241 225-513 139-429 (430)
262 2xe4_A Oligopeptidase B; hydro 98.1 0.00029 9.8E-09 81.3 24.3 241 220-517 170-461 (751)
263 4hw6_A Hypothetical protein, I 98.1 0.00081 2.8E-08 72.1 25.9 204 309-513 181-432 (433)
264 1ijq_A LDL receptor, low-densi 98.1 0.0057 1.9E-07 62.4 31.2 199 310-516 30-240 (316)
265 3v9f_A Two-component system se 98.1 0.013 4.4E-07 67.8 37.7 200 309-517 362-571 (781)
266 3v64_C Agrin; beta propeller, 98.1 0.0037 1.3E-07 64.8 29.6 226 311-545 35-265 (349)
267 1w6s_A Methanol dehydrogenase 98.0 0.00072 2.4E-08 75.4 24.0 221 320-544 166-536 (599)
268 2xe4_A Oligopeptidase B; hydro 98.0 0.00043 1.5E-08 79.8 22.8 193 311-512 175-398 (751)
269 3p5b_L Low density lipoprotein 98.0 0.012 4.3E-07 62.0 32.4 202 308-517 110-323 (400)
270 3v65_B Low-density lipoprotein 98.0 0.0029 9.8E-08 66.7 27.4 223 313-544 80-307 (386)
271 1ijq_A LDL receptor, low-densi 98.0 0.0048 1.6E-07 63.0 28.2 181 330-517 10-198 (316)
272 3v9f_A Two-component system se 98.0 0.035 1.2E-06 64.1 38.1 249 223-516 66-344 (781)
273 3kya_A Putative phosphatase; s 97.9 0.004 1.4E-07 67.2 27.2 207 310-517 186-478 (496)
274 2xbg_A YCF48-like protein; pho 97.9 0.028 9.6E-07 57.4 31.7 219 309-544 79-312 (327)
275 3sov_A LRP-6, low-density lipo 97.9 0.018 6E-07 58.8 29.7 199 310-517 35-241 (318)
276 1flg_A Protein (quinoprotein e 97.8 0.0042 1.4E-07 69.1 26.8 170 372-544 291-549 (582)
277 3p5b_L Low density lipoprotein 97.8 0.011 3.6E-07 62.6 27.2 188 322-517 85-280 (400)
278 2p9w_A MAL S 1 allergenic prot 97.7 0.006 2E-07 61.9 22.8 206 305-514 8-265 (334)
279 3qqz_A Putative uncharacterize 97.7 0.018 6.2E-07 56.5 25.7 203 216-469 20-250 (255)
280 2ad6_A Methanol dehydrogenase 97.7 0.0052 1.8E-07 68.3 24.5 150 320-474 115-337 (571)
281 4hw6_A Hypothetical protein, I 97.7 0.0048 1.7E-07 66.0 23.0 196 311-512 140-372 (433)
282 1w6s_A Methanol dehydrogenase 97.5 0.015 5.3E-07 64.6 25.3 147 323-474 124-344 (599)
283 3tc9_A Hypothetical hydrolase; 97.5 0.0037 1.3E-07 66.8 19.5 156 351-514 138-301 (430)
284 3m0c_C LDL receptor, low-densi 97.5 0.092 3.2E-06 60.3 32.1 201 308-517 422-635 (791)
285 3sov_A LRP-6, low-density lipo 97.5 0.019 6.5E-07 58.5 23.5 182 329-517 12-200 (318)
286 3m0c_C LDL receptor, low-densi 97.5 0.03 1E-06 64.3 27.1 183 328-517 402-592 (791)
287 2ism_A Putative oxidoreductase 97.5 0.032 1.1E-06 57.7 25.1 229 309-547 30-337 (352)
288 3amr_A 3-phytase; beta-propell 97.4 0.056 1.9E-06 55.2 25.3 185 322-513 42-262 (355)
289 1kv9_A Type II quinohemoprotei 97.3 0.0036 1.2E-07 71.0 17.1 193 320-518 66-337 (668)
290 2ism_A Putative oxidoreductase 97.3 0.14 4.7E-06 52.9 27.0 227 223-502 31-333 (352)
291 2p9w_A MAL S 1 allergenic prot 97.2 0.072 2.5E-06 53.9 23.6 110 312-422 65-215 (334)
292 1n7d_A LDL receptor, low-densi 97.2 0.0012 4.3E-08 75.1 10.9 200 310-517 406-617 (699)
293 1k3i_A Galactose oxidase precu 97.1 0.0053 1.8E-07 69.5 16.0 225 225-461 245-530 (656)
294 3a9g_A Putative uncharacterize 97.1 0.27 9.4E-06 50.6 27.6 229 222-502 28-330 (354)
295 3a9g_A Putative uncharacterize 97.1 0.19 6.6E-06 51.8 26.2 229 309-545 28-332 (354)
296 3kya_A Putative phosphatase; s 97.1 0.049 1.7E-06 58.7 21.9 154 311-470 140-339 (496)
297 3amr_A 3-phytase; beta-propell 97.1 0.081 2.8E-06 54.0 22.3 141 329-471 98-262 (355)
298 4a0p_A LRP6, LRP-6, low-densit 97.1 0.46 1.6E-05 53.0 30.6 195 310-516 37-239 (628)
299 2g8s_A Glucose/sorbosone dehyd 97.0 0.29 9.9E-06 50.4 26.0 67 441-507 271-347 (353)
300 1flg_A Protein (quinoprotein e 97.0 0.022 7.5E-07 63.3 18.3 85 371-461 465-549 (582)
301 3sre_A PON1, serum paraoxonase 96.9 0.31 1E-05 50.2 25.6 191 310-511 50-295 (355)
302 3pbp_A Nucleoporin NUP82; beta 96.9 0.063 2.1E-06 56.1 19.7 148 361-510 31-208 (452)
303 3s94_A LRP-6, low-density lipo 96.9 0.23 7.8E-06 55.5 26.0 199 310-517 40-246 (619)
304 2xzh_A Clathrin heavy chain 1; 96.9 0.45 1.5E-05 47.9 30.6 236 229-516 73-334 (365)
305 4a0p_A LRP6, LRP-6, low-densit 96.9 0.43 1.5E-05 53.3 27.9 186 321-517 7-200 (628)
306 1bpo_A Protein (clathrin); cla 96.7 0.73 2.5E-05 48.2 30.9 205 310-517 106-334 (494)
307 2xzh_A Clathrin heavy chain 1; 96.7 0.6 2E-05 47.0 26.4 191 318-520 75-296 (365)
308 1bpo_A Protein (clathrin); cla 96.7 0.57 1.9E-05 49.0 24.7 192 317-520 73-295 (494)
309 1n7d_A LDL receptor, low-densi 96.7 0.0042 1.4E-07 70.8 10.0 180 329-516 385-573 (699)
310 3s94_A LRP-6, low-density lipo 96.6 0.38 1.3E-05 53.6 25.5 182 328-517 16-205 (619)
311 2xbg_A YCF48-like protein; pho 96.6 0.78 2.7E-05 46.5 28.6 217 309-542 35-267 (327)
312 1tl2_A L10, protein (tachylect 96.5 0.038 1.3E-06 52.4 13.4 178 322-514 6-208 (236)
313 2xn4_A Kelch-like protein 2; s 96.5 0.2 6.7E-06 50.1 20.1 182 322-515 64-277 (302)
314 2vpj_A Kelch-like protein 12; 96.4 0.17 5.8E-06 50.5 19.2 182 322-515 65-279 (301)
315 3sre_A PON1, serum paraoxonase 96.4 0.31 1.1E-05 50.1 20.9 165 370-541 81-283 (355)
316 3ii7_A Kelch-like protein 7; p 96.3 0.37 1.3E-05 48.1 20.7 180 322-515 58-273 (306)
317 3ott_A Two-component system se 96.3 2 7E-05 48.9 29.3 193 310-516 63-262 (758)
318 4asc_A Kelch repeat and BTB do 96.1 0.56 1.9E-05 47.1 21.3 132 332-473 69-222 (315)
319 3ei3_A DNA damage-binding prot 96.1 3.8 0.00013 49.1 34.8 223 311-543 515-755 (1158)
320 3das_A Putative oxidoreductase 96.0 1.6 5.6E-05 44.5 26.2 244 216-502 25-326 (347)
321 1cru_A Protein (soluble quinop 96.0 2.1 7.2E-05 45.6 29.3 31 222-252 26-56 (454)
322 3ott_A Two-component system se 95.8 3.5 0.00012 46.9 28.9 190 310-514 419-626 (758)
323 1zgk_A Kelch-like ECH-associat 95.6 0.52 1.8E-05 47.2 18.0 172 330-515 90-288 (308)
324 3pbp_A Nucleoporin NUP82; beta 95.5 0.18 6.3E-06 52.6 14.2 141 322-468 34-208 (452)
325 3s25_A Hypothetical 7-bladed b 95.3 1.5 5.2E-05 43.8 20.2 187 329-542 36-240 (302)
326 2woz_A Kelch repeat and BTB do 95.2 1.5 5.1E-05 43.9 20.2 131 332-472 80-231 (318)
327 2vpj_A Kelch-like protein 12; 95.1 0.98 3.3E-05 44.8 18.3 173 330-516 31-233 (301)
328 1cru_A Protein (soluble quinop 94.9 1.1 3.9E-05 47.7 19.0 110 349-460 26-162 (454)
329 1tl2_A L10, protein (tachylect 94.7 0.55 1.9E-05 44.5 13.8 168 362-542 4-199 (236)
330 2xn4_A Kelch-like protein 2; s 94.6 2 6.9E-05 42.4 19.1 175 330-516 30-231 (302)
331 3s25_A Hypothetical 7-bladed b 94.6 3.8 0.00013 40.9 21.0 162 330-517 88-258 (302)
332 3ii7_A Kelch-like protein 7; p 94.5 2 7E-05 42.5 18.8 181 322-516 14-227 (306)
333 2g8s_A Glucose/sorbosone dehyd 94.2 0.91 3.1E-05 46.6 15.7 152 392-544 18-217 (353)
334 3ei3_A DNA damage-binding prot 94.2 12 0.00043 44.6 32.3 182 222-458 553-754 (1158)
335 1zgk_A Kelch-like ECH-associat 94.1 1.8 6.1E-05 43.1 17.4 181 322-516 27-242 (308)
336 4asc_A Kelch repeat and BTB do 94.0 5.3 0.00018 39.7 21.5 182 322-516 7-223 (315)
337 2uvk_A YJHT; unknown function, 93.7 1 3.4E-05 46.0 14.8 87 330-420 86-224 (357)
338 3das_A Putative oxidoreductase 93.4 7.7 0.00026 39.5 26.7 237 303-547 25-330 (347)
339 1xi4_A Clathrin heavy chain; a 93.3 3.6 0.00012 49.5 19.8 203 310-515 106-332 (1630)
340 1xi4_A Clathrin heavy chain; a 93.3 2.2 7.4E-05 51.3 17.9 192 318-520 74-295 (1630)
341 2be1_A Serine/threonine-protei 92.5 10 0.00035 38.4 23.7 145 327-477 64-236 (339)
342 2woz_A Kelch repeat and BTB do 91.8 11 0.00037 37.3 20.5 174 331-516 25-233 (318)
343 3b7f_A Glycosyl hydrolase, BNR 91.7 11 0.00037 38.9 19.6 156 310-469 55-259 (394)
344 2be1_A Serine/threonine-protei 91.4 0.33 1.1E-05 49.5 7.2 109 320-428 10-136 (339)
345 2zwa_A Leucine carboxyl methyl 91.2 13 0.00043 41.9 20.9 149 320-473 451-636 (695)
346 2zwa_A Leucine carboxyl methyl 90.7 4 0.00014 46.0 16.1 149 322-473 400-578 (695)
347 3b7f_A Glycosyl hydrolase, BNR 87.3 28 0.00096 35.6 25.8 146 310-460 115-297 (394)
348 2uvk_A YJHT; unknown function, 86.8 16 0.00053 36.8 16.1 91 320-412 19-128 (357)
349 3qhy_B Beta-lactamase inhibito 86.5 26 0.00087 34.3 18.8 182 311-515 64-247 (282)
350 3uc1_A DNA gyrase subunit A; D 86.1 30 0.001 34.7 21.9 150 233-422 108-279 (327)
351 3sbq_A Nitrous-oxide reductase 84.7 48 0.0016 35.8 20.1 195 320-515 141-409 (638)
352 2wg3_C Hedgehog-interacting pr 83.9 18 0.00061 38.4 15.2 113 392-504 14-159 (463)
353 2rr3_B OSBP, oxysterol-binding 81.5 0.62 2.1E-05 30.7 1.5 19 3-21 12-30 (47)
354 2wg3_C Hedgehog-interacting pr 80.6 61 0.0021 34.2 27.1 29 223-251 14-43 (463)
355 3no0_A DNA gyrase subunit A; D 79.5 48 0.0016 32.2 20.3 192 322-515 37-247 (276)
356 3q6k_A 43.2 kDa salivary prote 79.0 61 0.0021 33.2 24.0 169 331-501 124-341 (381)
357 1wp5_A Topoisomerase IV; broke 74.5 72 0.0025 31.8 28.2 197 319-515 49-278 (323)
358 3uc1_A DNA gyrase subunit A; D 73.3 78 0.0027 31.6 25.2 147 321-471 110-278 (327)
359 4hvt_A Ritya.17583.B, post-pro 72.8 1.3E+02 0.0043 33.8 19.8 193 312-515 131-382 (711)
360 1sqj_A OXG-RCBH, oligoxylogluc 72.7 91 0.0031 35.4 17.6 160 349-508 14-195 (789)
361 4gq2_M Nucleoporin NUP120; bet 70.7 61 0.0021 37.8 15.7 38 310-347 236-274 (950)
362 3sbq_A Nitrous-oxide reductase 68.5 17 0.00058 39.3 9.2 101 310-411 323-454 (638)
363 3no0_A DNA gyrase subunit A; D 66.0 99 0.0034 29.9 19.8 160 351-516 25-198 (276)
364 4hvt_A Ritya.17583.B, post-pro 62.2 2E+02 0.0068 32.1 25.8 174 330-513 216-429 (711)
365 3qhy_B Beta-lactamase inhibito 60.9 1.2E+02 0.0042 29.2 15.5 181 311-514 25-207 (282)
366 2cn3_A Xyloglucanase, beta-1,4 58.3 2.3E+02 0.0079 31.6 18.1 112 351-462 24-153 (737)
367 1zi0_A DNA gyrase subunit A; b 57.8 1.5E+02 0.005 29.2 28.8 195 319-515 52-278 (307)
368 1uuj_A Platelet-activating fac 57.2 0.47 1.6E-05 37.4 -3.8 59 120-178 4-69 (88)
369 3l6v_A GYRA, DNA gyrase subuni 53.0 2E+02 0.0067 29.2 24.7 192 319-515 5-266 (370)
370 4gq2_M Nucleoporin NUP120; bet 50.2 74 0.0025 37.0 11.4 36 223-258 236-271 (950)
371 1suu_A DNA gyrase subunit A; t 49.3 2E+02 0.0069 28.2 26.5 188 322-515 10-232 (312)
372 3l6v_A GYRA, DNA gyrase subuni 44.5 2.6E+02 0.009 28.2 30.2 203 311-514 47-316 (370)
373 1sqj_A OXG-RCBH, oligoxylogluc 40.9 4.3E+02 0.015 29.7 21.5 155 309-466 14-195 (789)
374 3a0f_A Xyloglucanase; beta-pro 40.6 4.3E+02 0.015 29.5 20.0 152 308-463 19-203 (763)
375 4fhn_B Nucleoporin NUP120; pro 39.2 61 0.0021 38.6 8.6 37 311-347 239-276 (1139)
376 1zi0_A DNA gyrase subunit A; b 38.6 2.9E+02 0.0099 27.0 23.7 188 322-514 5-226 (307)
377 2cn3_A Xyloglucanase, beta-1,4 38.4 4.5E+02 0.015 29.2 19.9 102 311-412 24-153 (737)
378 1suu_A DNA gyrase subunit A; t 36.5 3.1E+02 0.011 26.8 28.8 153 319-472 57-231 (312)
379 3a0f_A Xyloglucanase; beta-pro 31.5 5.9E+02 0.02 28.4 17.0 157 348-505 19-203 (763)
380 3f7f_A Nucleoporin NUP120; nuc 28.4 75 0.0026 35.4 6.3 38 310-348 222-259 (729)
381 3f7f_A Nucleoporin NUP120; nuc 25.2 91 0.0031 34.8 6.2 36 351-389 223-258 (729)
382 3kci_A Probable E3 ubiquitin-p 25.1 5.3E+02 0.018 25.8 25.7 192 312-514 107-345 (389)
383 3q6k_A 43.2 kDa salivary prote 21.6 6.4E+02 0.022 25.5 21.0 143 372-514 123-306 (381)
384 4a9v_A PHOX; hydrolase, beta-p 20.8 2.9E+02 0.01 29.9 8.9 60 351-411 477-550 (592)
385 3zwu_A Alkaline phosphatase PH 20.1 2.3E+02 0.008 30.7 8.2 58 352-410 478-549 (592)
386 4a9v_A PHOX; hydrolase, beta-p 20.1 3.4E+02 0.012 29.4 9.2 59 310-369 476-549 (592)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-40 Score=359.12 Aligned_cols=368 Identities=19% Similarity=0.303 Sum_probs=244.3
Q ss_pred cccccCCceEEeecccc--cccchhhhhhcCCC--CCCCC---cchhhhHhHHHHHHhhhcccchhhccccCCCCCCCCC
Q 005956 121 LEQDQMNECVVTLEGES--NGFSQSVDKFENPF--PECKG---VNIKKVKKLWKRIISMKKRNVETCMSEKRKPNSEKPK 193 (667)
Q Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (667)
|.++|.+++...+..|. .++...++.|+... +.... .....+++.|..+.+++++..+.. ............
T Consensus 3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~-~~~~~~~~~~~~ 81 (410)
T 1vyh_C 3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE-SKLNEAKEEFTS 81 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHH-HHHHHHHHHHhc
Confidence 56677777777777774 56655555555532 11111 112455677888888766532211 110010000000
Q ss_pred cchhHHhhcccccccccccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCC
Q 005956 194 ANKMEVKQNKKKCMEFTALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKE 273 (667)
Q Consensus 194 ~~~~~~~~~~k~~~~~~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~ 273 (667)
.... ....+...+.+.......+.+|.++|++++|+|++++||+|+.||+|+|||+.+
T Consensus 82 ~~~~--~~~~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-------------------- 139 (410)
T 1vyh_C 82 GGPL--GQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-------------------- 139 (410)
T ss_dssp ------------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT--------------------
T ss_pred cCCc--cccCCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------
Confidence 0001 111112222333444667899999999999999999999999999999999986
Q ss_pred CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956 274 GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY 351 (667)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~ 351 (667)
......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...
T Consensus 140 -------------------------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 194 (410)
T 1vyh_C 140 -------------------------GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194 (410)
T ss_dssp -------------------------CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred -------------------------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence 34567888999999999999999 99999999999999999999988875 8999
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
|.+++|+| ++++|++|+.|++|++||+.++..+. +..|...|.+++++|+|++|++|+.||.|++||+.+......
T Consensus 195 V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~-- 271 (410)
T 1vyh_C 195 VSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-- 271 (410)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--
T ss_pred EEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE--
Confidence 99999999 99999999999999999999988664 667889999999999999999999999999999987765432
Q ss_pred eeccccCcCCCCeEEEEEccCC-------------------CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEE
Q 005956 431 DFHDRKKTSGNKITGIQFSRDE-------------------SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASF 491 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 491 (667)
...|...|.+++|+|++ +.+|++++.|+.|++||+...........|...|.+++|
T Consensus 272 -----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 346 (410)
T 1vyh_C 272 -----LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346 (410)
T ss_dssp -----ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred -----ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 22345789999999963 368999999999999998865555444558899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956 492 TTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 492 spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+|+|++|++|+.|+.|+|||+.+++..... .+...+.++.|+|++.+|+++..
T Consensus 347 ~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999887654332 33455677899999988887644
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-39 Score=371.61 Aligned_cols=409 Identities=17% Similarity=0.186 Sum_probs=292.1
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------ceeeeeeCCCCCccccCC-----CC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV-------------AASCKSFTDDGGFGSNAK-----EG 274 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~-------------~~~~~~~~~~~~~~~~~~-----~~ 274 (667)
...+.+.+|.+.|++++|+|||++||+|+.||+|+|||+.+. ....+.|++++..++... .+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 445678899999999999999999999999999999998643 233455666654433211 12
Q ss_pred eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY 351 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~ 351 (667)
.+.+++. ......+.+|...|.+++|+|++ .|++++.|++|++||..+++++..+. |...
T Consensus 130 ~v~~wd~-----------------~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~ 192 (611)
T 1nr0_A 130 HVFLFDT-----------------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 192 (611)
T ss_dssp EEEETTT-----------------CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred EEEEeeC-----------------CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCc
Confidence 3333331 23456788999999999999997 69999999999999999999888885 9999
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec--------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA--------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~ 423 (667)
|++++|+| ++++|++|+.|++|++||+.+++..... .|.+.|.+++|+|+|++|++++.|++|++||+.+.
T Consensus 193 V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 193 VHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 99999999 9999999999999999999988776533 68899999999999999999999999999999876
Q ss_pred cceeeeEe------------------------------------eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 424 DLKLEKVD------------------------------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 424 ~~~~~~~~------------------------------------~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
+....... .......|...|++++|+|+| .+|++++.|+.|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINS 350 (611)
T ss_dssp EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEE
Confidence 54322100 000123467899999999996 89999999999999
Q ss_pred EECCcceeeEE---------------------------------------------------------------------
Q 005956 468 LDGVDVIHKFK--------------------------------------------------------------------- 478 (667)
Q Consensus 468 wd~~~~~~~~~--------------------------------------------------------------------- 478 (667)
||+........
T Consensus 351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred EECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 99753211000
Q ss_pred -------------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc--ccccccCccceeEEccCCcEEEEec
Q 005956 479 -------------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 479 -------------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
...+...+.+++|+|||++||+|+.|+.|++||+.++... ........+.+++|+|||.+||++.
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc
Confidence 0002245678999999999999999999999999876431 1123345567789999999999876
Q ss_pred CCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhH
Q 005956 544 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQ 622 (667)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.+..- +++........... .....+...+....|||++.+++.|+..+. ..|..+..... .. +
T Consensus 511 ~d~~v--~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~--~~-----------~ 574 (611)
T 1nr0_A 511 QSRKV--IPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH--PI-----------I 574 (611)
T ss_dssp TTSCE--EEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC--CE-----------E
T ss_pred CCCCE--EEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc--cc-----------h
Confidence 55432 22211110000000 001113344567899999999999887776 45765432100 00 0
Q ss_pred HHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956 623 RLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
.+..|.. ..+.....++.|. ||||+.||+||+|.
T Consensus 575 ~~~~h~~--~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 575 IKGAHAM--SSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp ETTSSTT--SCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred hhccCcc--cCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 0111100 0011234456788 89999999999996
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-38 Score=326.82 Aligned_cols=281 Identities=15% Similarity=0.245 Sum_probs=236.3
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+.+.+++++|.+.|++++|+|++++||+|+.||+|+|||+.++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~------------------------------------- 45 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ------------------------------------- 45 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------------------
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------------------
Confidence 3456788999999999999999999999999999999999862
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs 369 (667)
..+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+
T Consensus 46 --------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs 116 (304)
T 2ynn_A 46 --------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS 116 (304)
T ss_dssp --------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred --------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEEC
Confidence 3467788999999999999998 99999999999999999999988885 999999999999 999999999
Q ss_pred cCCeEEEEecCCCe-EE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 370 IDGKVRIWGVCEKR-VV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~-~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
.|++|++||+.++. +. .+..|...|.+++|+| ++..|++|+.||.|++||++......... ..+...+..+
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~------~~~~~~v~~~ 190 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT------TGQERGVNYV 190 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE------CCCTTCEEEE
T ss_pred CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec------cCCcCcEEEE
Confidence 99999999998874 33 3667899999999999 67899999999999999998765433211 1223678999
Q ss_pred EEccC-CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-cc
Q 005956 447 QFSRD-ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KN 524 (667)
Q Consensus 447 ~~sp~-g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~ 524 (667)
.|+|. +..+|++++.|+.|++||+...........|...|.+++|+|++++|++|+.||.|+|||+.+++...... ..
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence 99873 24799999999999999998655555545589999999999999999999999999999999887654432 23
Q ss_pred CccceeEEccCCc--EEEEecC
Q 005956 525 SVRSCEHFFSEGV--SVAVQWP 544 (667)
Q Consensus 525 ~~~~~~~fs~dg~--~lav~w~ 544 (667)
....+++|+|++. ++|.++.
T Consensus 271 ~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 271 ERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SSEEEEEECTTCGGGCEEEEET
T ss_pred ccEEEEEECCCCCceEEEEecC
Confidence 3455678888875 4666544
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=321.45 Aligned_cols=279 Identities=21% Similarity=0.335 Sum_probs=235.1
Q ss_pred ceeeccccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 215 SQEIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+.+++|.+.|++++|+|+ +.+||||+.|++|+||++.....
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------------------- 70 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------------------- 70 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE----------------------------------
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe----------------------------------
Confidence 3566799999999999985 67999999999999999875211
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
.....+.+|...|.+++|++++ .+++++.|++|++||+.+++++..+. +...+.+++|+| ++++|++|
T Consensus 71 ---------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g 140 (321)
T 3ow8_A 71 ---------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATG 140 (321)
T ss_dssp ---------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEE
T ss_pred ---------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEE
Confidence 1234678999999999999998 99999999999999999999988885 777899999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
+.|+.|++||+.+++... +..+...|.+++|+|+|++|++|+.||.|++||+++++.... ...|..+|++++
T Consensus 141 ~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~ 213 (321)
T 3ow8_A 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-------LEGHAMPIRSLT 213 (321)
T ss_dssp CTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCCCEEE
T ss_pred cCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-------EcccCCceeEEE
Confidence 999999999999887654 556778899999999999999999999999999987765322 223457899999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCc
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSV 526 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~ 526 (667)
|+|++ .+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|+.|+|||+.++...... .....
T Consensus 214 ~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~ 292 (321)
T 3ow8_A 214 FSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292 (321)
T ss_dssp ECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc
Confidence 99996 89999999999999998865555555558999999999999999999999999999999988764432 33455
Q ss_pred cceeEEccCCcEEEEecCC
Q 005956 527 RSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~ 545 (667)
+..+.|+|+|..|+.+..+
T Consensus 293 v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 293 VWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCC
Confidence 6677999999988876543
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.6e-37 Score=321.86 Aligned_cols=282 Identities=21% Similarity=0.381 Sum_probs=233.2
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCc-cccCCCCeEEec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGF-GSNAKEGKIKFG 279 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~ 279 (667)
+...++|++|.+.|++++|+||+++|++|+.||+|+|||+.++. ..++.|.+++.. .....++.+.++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999987653 334456666643 334455666665
Q ss_pred ccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 358 (667)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 358 (667)
....... .......+.+|...|.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+
T Consensus 125 ~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 125 NLKTREG-----------NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp ETTTCSB-----------SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ECccCCC-----------cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 5432211 11235677899999999999999999999999999999999999988885 89999999999
Q ss_pred eCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC
Q 005956 359 PIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
| ++++|++|+.|++|++||++++.... +..|...|++++|+|++++|++|+.||.|++||++....... +. ..
T Consensus 194 ~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~----~~ 267 (340)
T 1got_B 194 P-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-YS----HD 267 (340)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----CT
T ss_pred C-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-Ec----cC
Confidence 9 99999999999999999999987664 667889999999999999999999999999999987654322 11 11
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
.+...|++++|+|+| .+|++++.|+.|++||............|...|.+++|+|+|.+|++|+.|+.|+|||
T Consensus 268 ~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 268 NIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 223579999999996 8999999999999999875544444445899999999999999999999999999996
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-36 Score=317.75 Aligned_cols=285 Identities=19% Similarity=0.311 Sum_probs=232.6
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce-----------eeeeeCCCCCc-cccCCCCeEEec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGF-GSNAKEGKIKFG 279 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~ 279 (667)
+...++|++|.+.|++|+|+|++++||||+.||+|+|||..+... .++.|.+++.. .+...++.+.++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 345678999999999999999999999999999999999876533 34556666643 344556666655
Q ss_pred ccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEE
Q 005956 280 KKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQF 357 (667)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 357 (667)
........ ........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 134 ~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 134 PLTFDKNE---------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 204 (354)
T ss_dssp ECCCCTTC---------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEeccccc---------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence 43221110 0113456778999999999999999 99999999999999999999998885 8999999999
Q ss_pred eeC-CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 358 NPI-DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 358 ~p~-d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
+|. ++++|++|+.|++|++||+++++.+. +..|...|++++|+|+++.|++|+.|++|++||++....... +.
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~-~~---- 279 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI-YS---- 279 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-EC----
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE-Ec----
Confidence 883 36899999999999999999988765 567889999999999999999999999999999987644321 11
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
...+...+++++|+|++ .+|++++.|+.|++||+.+.........|...|.+++|+|+|++|++|+.|+.|+||+
T Consensus 280 ~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 11223578999999996 8999999999999999876544444556899999999999999999999999999996
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-36 Score=341.48 Aligned_cols=408 Identities=21% Similarity=0.331 Sum_probs=293.1
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CceeeeeeCCCCCccc-cCCCCeEEecccC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS----------VAASCKSFTDDGGFGS-NAKEGKIKFGKKK 282 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 282 (667)
+.++|.+|.+.|++|+|+|||++||+++.|++|+|||+.. ....++.|++++..++ ...++.+.++...
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~ 128 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccc
Confidence 4567889999999999999999999999999999999753 2344556666664332 2222222211100
Q ss_pred C---------------------------------------------------------------CCceeecC---CCccc
Q 005956 283 S---------------------------------------------------------------SHVPVVIP---DEVFQ 296 (667)
Q Consensus 283 ~---------------------------------------------------------------~~~~~~~~---~~~~~ 296 (667)
. ........ -.+|+
T Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~ 208 (577)
T 2ymu_A 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEe
Confidence 0 00000000 02344
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
...+.+..+.+|...|.+++|+|++ +|++++.|++|++||.. ++.+..+ .|...|.+++|+| +++.|++++.|+.|
T Consensus 209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTV 286 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEE
Confidence 5566677888999999999999999 99999999999999975 4555555 5999999999999 99999999999999
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
++||........+..|...|.+++|+|+++.|++++.||.|++||+....... ...+...|.+++|+|++ .
T Consensus 287 ~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~ 357 (577)
T 2ymu_A 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT--------LTGHSSSVWGVAFSPDG-Q 357 (577)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE--------ECCCSSCEEEEEECTTS-S
T ss_pred EEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE--------EeCCCCCEEEEEECCCC-C
Confidence 99998776666778899999999999999999999999999999987544321 12345789999999996 8
Q ss_pred EEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEc
Q 005956 455 RIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFF 533 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs 533 (667)
+|++++.|+.|++||.. .....+.. |...|.+++|+|+|++|++++.|+.|++||...............+..+.|+
T Consensus 358 ~l~~~~~dg~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 358 TIASASDDKTVKLWNRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEEETTSEEEEEETTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEcCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC
Confidence 99999999999999965 33444444 7889999999999999999999999999997654333333445556678999
Q ss_pred cCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccC
Q 005956 534 SEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDS 612 (667)
Q Consensus 534 ~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~ 612 (667)
||+.+|+++..+.. ++++.... .....+..+........|||++.+++.+...+. ..|....- ...
T Consensus 436 ~d~~~l~~~~~d~~--v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~-----~~~- 502 (577)
T 2ymu_A 436 PDDQTIASASDDKT--VKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQ- 502 (577)
T ss_dssp TTSSEEEEEETTSE--EEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-----EEE-
T ss_pred CCCCEEEEEcCCCE--EEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-----EEE-
Confidence 99999998755432 22221110 000112223334556789999999998877665 45653211 000
Q ss_pred CCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeeee
Q 005956 613 DGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFHN 660 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~~ 660 (667)
.+..|-. .......+|.|..||||+.||.||+|.-
T Consensus 503 ----------~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 503 ----------TLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp ----------EEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred ----------EEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 0011100 0112345678889999999999999963
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6e-37 Score=325.07 Aligned_cols=280 Identities=15% Similarity=0.215 Sum_probs=222.2
Q ss_pred eccccccEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGE------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
..+|++.|++++|||||++||+|+. |+.|++|+..++...
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------------------------------- 83 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------------------------------- 83 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------------------------
Confidence 3479999999999999999999998 667888876643210
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE-----EeeCCCcEEEEEEeeCCCCEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-----VFDHHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~-----~~~h~~~V~~l~f~p~d~~~l~ 366 (667)
........+|...|.+++|+|++.+++++.||+|+|||+.+++... ...|...|++++|+| ++++|+
T Consensus 84 -------~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~ 155 (357)
T 4g56_B 84 -------ESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAV 155 (357)
T ss_dssp -------GGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEE
T ss_pred -------eeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEE
Confidence 1223445678999999999999988899999999999998876543 235899999999999 999999
Q ss_pred EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
+|+.|++|++||+.+++.+. +..|...|++++|+|++. .+++++.||.|++||+++.+.... +. ...+...++
T Consensus 156 sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~----~~~~~~~v~ 230 (357)
T 4g56_B 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-ID----FCASDTIPT 230 (357)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CC----CTTCCSCEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-ee----ecccccccc
Confidence 99999999999999998765 667889999999999875 788999999999999987765432 11 122347799
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQK 523 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 523 (667)
+++|+|++..+|++++.|+.|++||+.+.........|...|.+++|+|++ ++||+|+.|++|+|||+++++......+
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC
T ss_pred chhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC
Confidence 999999877899999999999999988654444445588999999999987 6899999999999999999877655555
Q ss_pred cCccceeEEcc-CCcEEEEecC
Q 005956 524 NSVRSCEHFFS-EGVSVAVQWP 544 (667)
Q Consensus 524 ~~~~~~~~fs~-dg~~lav~w~ 544 (667)
...+.+++|+| |+.+||.+..
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEET
T ss_pred CCCEEEEEEeCCCCCEEEEEcC
Confidence 56677789998 7888877543
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=322.33 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=221.3
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
..|...|.+++|+|||++|++++ |+++++||..... +... .....
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-----------------------~~~~-----------~~~~~ 71 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-----------------------FKDP-----------CAAPN 71 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-----------------------ESSG-----------GGTTC
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-----------------------eccc-----------cccCC
Confidence 35788899999999999999888 7789999743100 0000 00000
Q ss_pred CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-----eCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-----DHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
.........|...|.+++|+|++.|++|+.||+|+|||+.+++++..+ .|...|++++|+| ++++|++|+.|++
T Consensus 72 ~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~ 150 (344)
T 4gqb_B 72 EGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDIC 150 (344)
T ss_dssp GGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred cceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCe
Confidence 111223345678899999999999999999999999999988765443 4899999999999 9999999999999
Q ss_pred EEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 374 VRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 374 v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
|++||+.+++.+. +..|...|++++|+|++. .|++|+.||.|++||+++.+.... +. ...+...+++++|+|+
T Consensus 151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~----~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-IG----CSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-CC--------CCCEEEEEECSS
T ss_pred EEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-ee----cceeeccceeeeecCC
Confidence 9999999998775 667899999999999885 688999999999999998765433 11 1123467999999998
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCccccccccCcccee
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCE 530 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 530 (667)
+..+|++++.|+.|+|||+...........|...|.+++|+|++ ++|++|+.|++|+|||+.+++......+...+.++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v 305 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDA 305 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEE
Confidence 77899999999999999987544433444488999999999998 58999999999999999988765554455567778
Q ss_pred EEccCCcEEEE
Q 005956 531 HFFSEGVSVAV 541 (667)
Q Consensus 531 ~fs~dg~~lav 541 (667)
+|+|++..+.+
T Consensus 306 ~~sp~~~~lla 316 (344)
T 4gqb_B 306 TWSPLNHSLLT 316 (344)
T ss_dssp EECSSSTTEEE
T ss_pred EEeCCCCeEEE
Confidence 99999875443
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.8e-36 Score=311.73 Aligned_cols=284 Identities=17% Similarity=0.270 Sum_probs=235.4
Q ss_pred cccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
+.+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------------------------------- 53 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------------------------------- 53 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------------------------------
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------------------------------
Confidence 45567899999999999999965 89999999999999998642110
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
...++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++++..+. |...|.+++|+| ++.+|++|
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 125 (319)
T 3frx_A 54 -------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISG 125 (319)
T ss_dssp -------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred -------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcC-CCCEEEEE
Confidence 123467889999999999999999 99999999999999999999988875 999999999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEEecccCCceEEEEEeeC------CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD------GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd------g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.|++|++||++...+..+..|...|.+++++|. +..+++++.|+.|++||++....... ...|...
T Consensus 126 s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~h~~~ 198 (319)
T 3frx_A 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------FIGHNSN 198 (319)
T ss_dssp ETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------ECCCCSC
T ss_pred eCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------ecCCCCc
Confidence 9999999999998877788899999999999985 45899999999999999987654322 2234688
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK- 521 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~- 521 (667)
|++++|+|+| .+|++++.|+.|+|||+.......... +...+.+++|+|++.+|++++.+ .|++|+++........
T Consensus 199 v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 199 INTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp EEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEEC
T ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccC
Confidence 9999999996 899999999999999988655444433 45689999999999999998855 5999999875432211
Q ss_pred --------cccCccceeEEccCCcEEEEecCCC
Q 005956 522 --------QKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 522 --------~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
........++|+|||++|+++..+.
T Consensus 276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1223345689999999999876543
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-36 Score=323.47 Aligned_cols=298 Identities=21% Similarity=0.347 Sum_probs=234.6
Q ss_pred cccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce-----------eeeeeCCCCCc-cccCCCCeEE
Q 005956 210 TALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA-----------SCKSFTDDGGF-GSNAKEGKIK 277 (667)
Q Consensus 210 ~~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~ 277 (667)
..+...++|++|.+.|++++|+|++++||||+.||+|+|||+.++.. ..+.|.+++.. ++...++.+.
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 34566788999999999999999999999999999999999987543 23445565543 3344455555
Q ss_pred ecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe------eCC
Q 005956 278 FGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF------DHH 349 (667)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~------~h~ 349 (667)
+++....... .........+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++++..+ .|.
T Consensus 134 iw~~~~~~~~--------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 134 IFNLSSQADR--------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT 205 (380)
T ss_dssp EEECCCCSSC--------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred EEECCCCccc--------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence 5543321110 00122345678999999999999975 7999999999999999999998877 378
Q ss_pred CcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL 427 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~ 427 (667)
..|.++.|++.++++|++|+.|++|++||++. ++ +..+..|...|++++|+|+|++|++|+.||+|++||++++....
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 89999999887889999999999999999974 33 34567899999999999999999999999999999999876543
Q ss_pred eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe----CCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 428 EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG----LPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 428 ~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
...........+...|++++|+|+| .+|++++.||.|++||.......... ..|...|.+++|+|+|++|++|+.
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred EecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 2111111112233458999999996 89999999999999998654433332 358899999999999999999999
Q ss_pred CCcEEEEEcCCCC
Q 005956 504 DCRVYVWNYDELC 516 (667)
Q Consensus 504 Dg~I~iWd~~~~~ 516 (667)
|+.|+||++....
T Consensus 365 D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 DKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEECCSSS
T ss_pred CCCEEEEecCCCc
Confidence 9999999998654
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-36 Score=336.72 Aligned_cols=391 Identities=22% Similarity=0.340 Sum_probs=292.5
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC----------ceeeeeeCCCCCcc-ccCCCCeEEecccC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGGFG-SNAKEGKIKFGKKK 282 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 282 (667)
.......|.+.|+++.|+|++++|++++.||.|++||.... ...++.+.+++..+ ....++.+.+|+
T Consensus 172 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~-- 249 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 249 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC--
T ss_pred eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEe--
Confidence 34456789999999999999999999999999999996532 23345556655332 334444555443
Q ss_pred CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeC
Q 005956 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPI 360 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~ 360 (667)
...+.+..+.+|...|.+++|+|++ .|++++.|++|++||... +.+..+ .|...|++++|+|
T Consensus 250 --------------~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~- 313 (577)
T 2ymu_A 250 --------------RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSP- 313 (577)
T ss_dssp --------------TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECT-
T ss_pred --------------CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECC-
Confidence 2345677888999999999999999 999999999999999764 455554 5999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
++++|++++.|++|++||+....+.....+...+.+++|+|+|+++++|+.+|.+++||.... .. ..+ ..|.
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~-~~~------~~~~ 385 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL-QTL------TGHS 385 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EE-EEE------ECCS
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EE-EEe------cCCC
Confidence 999999999999999999998888888889999999999999999999999999999996532 21 111 2245
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
..|++++|+|++ .+|++++.|+.|++||.. +....+.. |...|.+++|+|++++|++++.|+.|++||........
T Consensus 386 ~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~ 462 (577)
T 2ymu_A 386 SSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT 462 (577)
T ss_dssp SCEEEEEECTTS-SCEEEEETTSEEEEECTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEE
T ss_pred CCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEE
Confidence 789999999996 889999999999999965 33444444 88899999999999999999999999999986554443
Q ss_pred cccccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCC
Q 005956 520 SKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATW 598 (667)
Q Consensus 520 ~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w 598 (667)
.......+.+++|+|||.+||++..+.. ++++.... ... ..+..+...+....|||++.+++.+...|. ..|
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~--i~iw~~~~---~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNG---QLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSE--EEEEETTS---CEE--EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCE--EEEEcCCC---CEE--EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence 3444556778899999999998754432 22222110 000 122233344566789999999998887776 346
Q ss_pred CCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956 599 PAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
.... .... -+..|... ......+|.|..|||+|.||+||+|.
T Consensus 536 d~~~-----~~~~-----------~~~~h~~~---v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 536 NRNG-----QLLQ-----------TLTGHSSS---VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTS-----CEEE-----------EEECCSSC---EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eCCC-----CEEE-----------EEcCCCCC---EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5311 0000 01111111 10244567898899999999999983
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-35 Score=303.36 Aligned_cols=279 Identities=27% Similarity=0.478 Sum_probs=232.4
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
..+..++.+|.+.|++++|+|+|++||+|+.||.|+||++.++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~------------------------------------- 55 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG------------------------------------- 55 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------------------------
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-------------------------------------
Confidence 4456778999999999999999999999999999999998752
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs 369 (667)
+....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+
T Consensus 56 --------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~ 126 (312)
T 4ery_A 56 --------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126 (312)
T ss_dssp --------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred --------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEe
Confidence 3456678999999999999999 99999999999999999999988885 889999999999 999999999
Q ss_pred cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
.|+.|++||+++++.+. +..|...|.+++|+|++++|++|+.||.|++||+++.+..... ...+...+..++|
T Consensus 127 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~------~~~~~~~~~~~~~ 200 (312)
T 4ery_A 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------IDDDNPPVSFVKF 200 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------CCSSCCCEEEEEE
T ss_pred CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE------eccCCCceEEEEE
Confidence 99999999999887664 5668889999999999999999999999999999877653321 1123468999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCccee--eEEeCCCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCCccccc-ccc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDVIH--KFKGLPKSGSQMSASF-TTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKN 524 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~-spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~ 524 (667)
+|++ .+|++++.|+.|++||+.+... .+.++..........+ .+++.+|++|+.||.|++||+.+++..... ...
T Consensus 201 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 201 SPNG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp CTTS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred CCCC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 9996 8999999999999999886543 3443322222233334 467899999999999999999988764432 334
Q ss_pred CccceeEEccCCcEEEEec
Q 005956 525 SVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 525 ~~~~~~~fs~dg~~lav~w 543 (667)
..+..++|+|++..++.+.
T Consensus 280 ~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 280 DVVISTACHPTENIIASAA 298 (312)
T ss_dssp SCEEEEEECSSSSEEEEEE
T ss_pred CcEEEEeecCcCCceEEEE
Confidence 5566779999999998865
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=308.48 Aligned_cols=282 Identities=22% Similarity=0.348 Sum_probs=223.6
Q ss_pred cccceeeccccc-cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKG-CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~-~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
+.+.+++.+|.+ .|++++|+|+|++||+|+.|++|+|||+.+....+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~-------------------------------- 52 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC-------------------------------- 52 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------------------
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------------------
Confidence 345678889998 99999999999999999999999999987532110
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCCCCEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d~~~l~ 366 (667)
......+|...|.+++|+|++ +|++++.|++|+|||+..+. ++..+ .|...|.+++|+| ++++|+
T Consensus 53 ----------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~ 121 (345)
T 3fm0_A 53 ----------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLA 121 (345)
T ss_dssp ----------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred ----------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEE
Confidence 012235899999999999999 99999999999999998764 45555 4999999999999 999999
Q ss_pred EEecCCeEEEEecCCCe---E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 367 SGSIDGKVRIWGVCEKR---V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~---~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+|+.|++|++||+.++. . .....|...|.+++|+|++++|++|+.|+.|++||......... .. ...|...
T Consensus 122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~----~~~h~~~ 196 (345)
T 3fm0_A 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-AT----LEGHEST 196 (345)
T ss_dssp EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE-EE----ECCCSSC
T ss_pred EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE-EE----ecCCCCc
Confidence 99999999999998753 2 23567888999999999999999999999999999987653321 11 2234588
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCc-----------------ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVD-----------------VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-----------------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
|++++|+|+| .+|++++.|++|+|||... ....+.+ .|...|.+++|+|++.+|++++.|+
T Consensus 197 v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 197 VWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCC
Confidence 9999999996 8999999999999998421 1112222 2778899999999999999999999
Q ss_pred cEEEEEcCCCCcccc----------ccccCccceeEEccCCc-EEEEec
Q 005956 506 RVYVWNYDELCFPSS----------KQKNSVRSCEHFFSEGV-SVAVQW 543 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~----------~~~~~~~~~~~fs~dg~-~lav~w 543 (667)
.|++|+......... ..+...+.+++|+|++. +||.+.
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 999999876532111 12234456677888764 555543
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-35 Score=308.65 Aligned_cols=284 Identities=20% Similarity=0.305 Sum_probs=224.5
Q ss_pred cccceeeccccccEEEEEE-----cC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 212 LYTSQEIQAHKGCIWTLKF-----SP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~f-----sp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
+...++|++|.+.|++++| ++ ++++||||+.|++|+|||+.+.....
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------------- 63 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------------- 63 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence 3456789999999999999 77 99999999999999999997521100
Q ss_pred ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCC
Q 005956 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDN 363 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~ 363 (667)
....+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| +++
T Consensus 64 -----------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~ 131 (343)
T 2xzm_R 64 -----------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNR 131 (343)
T ss_dssp -----------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STT
T ss_pred -----------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCC
Confidence 0123456788999999999999999 99999999999999999999988875 999999999999 999
Q ss_pred EEEEEecCCeEEEEecCCCeEEEec---ccCCceEEEEEeeCC----------CEEEEEecCCcEEEEEecCCcceeeeE
Q 005956 364 YFISGSIDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDG----------KGFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~~~~~~---~~~~~v~~v~~spdg----------~~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
+|++++.|++|++||+......... .|...|.+++|+|++ .+|++++.||.|++||.. .... .
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~ 207 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIR---Y 207 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEE---E
T ss_pred EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Ccee---E
Confidence 9999999999999999865554433 678889999999987 789999999999999943 2211 1
Q ss_pred eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
.+ ..|...|++++|+|+| .+|++++.|+.|++||+...........+...|.+++|+|++.+|+++ .|+.|++|
T Consensus 208 ~~----~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 208 TF----KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp EE----ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred EE----cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 12 2345789999999996 899999999999999984321111111245679999999999988765 57889999
Q ss_pred EcCCCCccc--cc------------cccCccceeEEccCCcEEEEecC
Q 005956 511 NYDELCFPS--SK------------QKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 511 d~~~~~~~~--~~------------~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
++.++.... .. .......+++|+|+|..|+++..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 282 NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp ESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred EeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 998765422 11 12233556789999888887654
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=304.06 Aligned_cols=245 Identities=18% Similarity=0.340 Sum_probs=217.9
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
...+.+|...|++++|+|++.+|++|+.|++|+|||+.++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---------------------------------------- 112 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---------------------------------------- 112 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence 4467899999999999999999999999999999999863
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
+.+..+..|...+.+++|+|++ +|++++.|++|++|++.+++....+. |...|.+++|+| ++++|++|+.|+
T Consensus 113 -----~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg 186 (321)
T 3ow8_A 113 -----KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDG 186 (321)
T ss_dssp -----EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred -----CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCC
Confidence 3456677888899999999999 99999999999999999998887775 778999999999 999999999999
Q ss_pred eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.|++||+.+++.+. +..|...|.+++|+|++++|++|+.||.|++||++....... ...|...|++++|+|+
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-------LSGHASWVLNVAFCPD 259 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE-------ECCCSSCEEEEEECTT
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE-------EcCCCCceEEEEECCC
Confidence 99999999998765 567888999999999999999999999999999987665322 2234578999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
+ .+|++++.|+.|+|||+.+.........|...|.+++|+|++++|++++.||.|+|||+.
T Consensus 260 ~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 260 D-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred C-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6 799999999999999998766555555689999999999999999999999999999964
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-34 Score=329.98 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=223.2
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+++.+|.+.|++++|+|||++||+|+.|++|+|||+.++......
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~-------------------------------- 228 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF-------------------------------- 228 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC--------------------------------
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee--------------------------------
Confidence 345678899999999999999999999999999999998864321100
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-------------------------
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF------------------------- 346 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~------------------------- 346 (667)
........+|.+.|.+++|+|++ +|++++.|++|+|||+.+++++..+
T Consensus 229 ------~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 229 ------EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp ------BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred ------ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 00001122799999999999999 9999999999999999987765432
Q ss_pred -------------------eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec-------------------
Q 005956 347 -------------------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA------------------- 388 (667)
Q Consensus 347 -------------------~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~------------------- 388 (667)
.|...|++++|+| ++++|++++.|++|++||+.+++.....
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 3788999999999 9999999999999999998765432211
Q ss_pred ----------------------------------------------------------------ccCCceEEEEEeeCCC
Q 005956 389 ----------------------------------------------------------------DVRDVISAICYIPDGK 404 (667)
Q Consensus 389 ----------------------------------------------------------------~~~~~v~~v~~spdg~ 404 (667)
.+...+.+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0123467899999999
Q ss_pred EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEE--eCC
Q 005956 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFK--GLP 481 (667)
Q Consensus 405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~--~~~ 481 (667)
+|++|+.|++|++||+.+........ ..|...|++++|+|+| ++|++++.|++|++||+.+ ...... ...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~------~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT------IVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec------cCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence 99999999999999998764422111 2245789999999996 8999999999999999865 222111 122
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc---c-ccccCccceeEEccCCcEEEEecC
Q 005956 482 KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS---S-KQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 482 ~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~---~-~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
|...|.+++|+|||++||+|+.|++|+||+++++.... . .|....+..+.|+||+. |+.+..
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~ 600 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQ 600 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEET
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecC
Confidence 88999999999999999999999999999998865322 2 23245667789999998 665543
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=305.93 Aligned_cols=248 Identities=18% Similarity=0.267 Sum_probs=203.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|...|++++|+|++ +|++|+.||+|+|||+.++....
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------------------------------------- 117 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------------------------------------- 117 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------------------------------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------------------------------------
Confidence 477889999999986 78899999999999998643211
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
.....+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|.+..+|++|+.|++|++|
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 1123456899999999999999 99999999999999999999999886 999999999999445689999999999999
Q ss_pred ecCCCeEEEe---cccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 378 GVCEKRVVDW---ADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 378 dl~~~~~~~~---~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
|+++++.... ..+...+.+++|+|+ +++|++|+.||.|++||+++.+.... + ..|...|++++|+|++.
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~---~----~~h~~~v~~v~fsp~g~ 270 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS---S----AVHSQCVTGLVFSPHSV 270 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE---E----ECCSSCEEEEEECSSSS
T ss_pred cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE---E----cCCCCCEEEEEEccCCC
Confidence 9999886643 234567999999995 56888999999999999998765432 2 23457899999999976
Q ss_pred eEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCc
Q 005956 454 QRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.+|++++.|++|+|||+.... .+....|...|.+++|+|+++ +|+++|.|++|++|++.+...
T Consensus 271 ~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 271 PFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 789999999999999987543 234456899999999999986 577999999999999987654
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-34 Score=298.19 Aligned_cols=251 Identities=20% Similarity=0.309 Sum_probs=208.7
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+.+|.+.|++++|+|+|++||||+.|++|+||++...
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~----------------------------------------- 41 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE----------------------------------------- 41 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-----------------------------------------
Confidence 457799999999999999999999999999999998741
Q ss_pred cccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 367 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~s 367 (667)
..+.+.++.+|.+.|.+++|+++ + +|++|+.|++|+|||+.+++ .+..+ .|...|.+++|+| + +.+|++
T Consensus 42 --~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s 118 (297)
T 2pm7_B 42 --THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLV 118 (297)
T ss_dssp --CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEE
T ss_pred --CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEE
Confidence 12456788999999999999863 5 99999999999999998874 44444 4889999999999 5 789999
Q ss_pred EecCCeEEEEecCCCe---EEEecccCCceEEEEEeeC-------------CCEEEEEecCCcEEEEEecCCcceee-eE
Q 005956 368 GSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIPD-------------GKGFIVGSITGTCHFYKASGNDLKLE-KV 430 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~spd-------------g~~l~~gs~dg~i~l~d~~~~~~~~~-~~ 430 (667)
++.|++|++||++++. ......|...|.+++|+|+ +++|++|+.|+.|++||+++...... ..
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~ 198 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEE
Confidence 9999999999998763 3446678889999999997 57999999999999999987653322 11
Q ss_pred eeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcce-----eeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 431 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
.+ ..|...|.+++|+|++ ..+|++++.|++|+|||+.... ..+....+...|.+++|+|+|++||+++.
T Consensus 199 ~l----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 199 TL----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp EE----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred Ee----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 22 3356899999999985 4799999999999999976421 12222346788999999999999999999
Q ss_pred CCcEEEEEcCC
Q 005956 504 DCRVYVWNYDE 514 (667)
Q Consensus 504 Dg~I~iWd~~~ 514 (667)
|+.|+||+...
T Consensus 275 D~~v~lw~~~~ 285 (297)
T 2pm7_B 275 DNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 99999999763
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.4e-35 Score=316.74 Aligned_cols=246 Identities=24% Similarity=0.398 Sum_probs=216.1
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.+++|.+.|++++|+|+|++||+|+.||+|+|||+.+
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--------------------------------------- 181 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--------------------------------------- 181 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS---------------------------------------
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------------------------------------
Confidence 34567899999999999999999999999999999999975
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
...+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++.++..+. |...|.++.|+| ++.+|++|+.
T Consensus 182 ------~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~ 254 (410)
T 1vyh_C 182 ------FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSN 254 (410)
T ss_dssp ------SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEET
T ss_pred ------CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcC
Confidence 23466778999999999999999 99999999999999999999988885 889999999999 9999999999
Q ss_pred CCeEEEEecCCCeEEE-ecccCCceEEEEEeeC--------------------CCEEEEEecCCcEEEEEecCCcceeee
Q 005956 371 DGKVRIWGVCEKRVVD-WADVRDVISAICYIPD--------------------GKGFIVGSITGTCHFYKASGNDLKLEK 429 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spd--------------------g~~l~~gs~dg~i~l~d~~~~~~~~~~ 429 (667)
|++|++||+.+++... +..|...|.+++|+|+ |.+|++|+.||.|++||++++.....
T Consensus 255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~- 333 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT- 333 (410)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE-
Confidence 9999999999987654 6678899999999996 67899999999999999987765332
Q ss_pred EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956 430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 509 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i 509 (667)
+ ..|...|++++|+|+| .+|++++.|+.|++||+...........|...|.+++|+|++.+|++|+.||.|+|
T Consensus 334 --~----~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 334 --L----VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp --E----ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred --E----ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 2 2245789999999996 89999999999999998754333333348899999999999999999999999999
Q ss_pred EEc
Q 005956 510 WNY 512 (667)
Q Consensus 510 Wd~ 512 (667)
|++
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.1e-34 Score=305.90 Aligned_cols=295 Identities=17% Similarity=0.249 Sum_probs=222.2
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+|.+.|++++|+|||++||+|+ |+.++||++.++............. .....
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------------~~~~~ 113 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------------KDPEN 113 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------------ccccc
Confidence 6999999999999999999976 7899999998754432211000000 00000
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
........+...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|++++|+| ++++|++++.|++|++|
T Consensus 114 ~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEE
Confidence 0011122345569999999999 99999999999999999999888875 999999999999 99999999999999999
Q ss_pred ecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 378 GVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 378 dl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
|+.+++......+...+.+++|+| ++++|++|+.||.|++||+++................|...|++++|+|+| .+|
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l 271 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSV 271 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEE
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEE
Confidence 999999887777888899999999 899999999999999999987765432111111123466899999999996 899
Q ss_pred EEEeCCCcEEEEECCcc------------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956 457 MITSEDSKLRILDGVDV------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK 523 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~------------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~ 523 (667)
++++.|+.|++||+... ........|...|.+++|+|++++|++|+.|+.|++||+.++...... .+
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 99999999999997632 112233348889999999999999999999999999999988754332 22
Q ss_pred cCccceeEEcc------CCcEEEEecC
Q 005956 524 NSVRSCEHFFS------EGVSVAVQWP 544 (667)
Q Consensus 524 ~~~~~~~~fs~------dg~~lav~w~ 544 (667)
...+.++.|++ ++.++|.+..
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 33344456554 5666665433
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-33 Score=296.72 Aligned_cols=281 Identities=19% Similarity=0.247 Sum_probs=212.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+.+.++|++|.+.|++++|+|+ +||+|+.|++|+||++.....
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~----------------------------------- 46 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF----------------------------------- 46 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-----------------------------------
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-----------------------------------
Confidence 3456788999999999999998 999999999999999975211
Q ss_pred CCcccccCCcceee-ec-cccceEEEEecCCC-eEEEEeCCCcEEEEecCC-------CeEeEEe-eCCCcEEEEEEeeC
Q 005956 292 DEVFQIEESPLQEL-HG-HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-------NQCLNVF-DHHNYVTCVQFNPI 360 (667)
Q Consensus 292 ~~~~~~~~~~~~~l-~g-h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-------~~~~~~~-~h~~~V~~l~f~p~ 360 (667)
.....+ .+ |...|.+++|+|++ +|++++.|++|+|||+.. .+++..+ .|...|++++|+|
T Consensus 47 --------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 117 (330)
T 2hes_X 47 --------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN- 117 (330)
T ss_dssp --------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-
T ss_pred --------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-
Confidence 112333 34 99999999999999 999999999999999853 3455555 4999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCC----eEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 361 DDNYFISGSIDGKVRIWGVCEK----RVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~----~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
++++|++|+.|++|++||+... +.+ .+..|...|.+++|+|++++|++|+.|++|++||......... ..
T Consensus 118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~-~~---- 192 (330)
T 2hes_X 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV-AV---- 192 (330)
T ss_dssp TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE-EE----
T ss_pred CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE-EE----
Confidence 9999999999999999999532 333 4667889999999999999999999999999999986532211 11
Q ss_pred cCcCCCCeEEEEEccCC-CeEEEEEeCCCcEEEEECCcc--------eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 436 KKTSGNKITGIQFSRDE-SQRIMITSEDSKLRILDGVDV--------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
...|...|.+++|+|++ ..+|++++.|++|++||+... ....... .|...|.+++|++++ +|++++.||
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg 271 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG 271 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence 23346899999999983 268999999999999997532 1112222 278899999999765 899999999
Q ss_pred cEEEEEcCCCCc--cc---cccccCccceeEEcc--CCcEEEEecC
Q 005956 506 RVYVWNYDELCF--PS---SKQKNSVRSCEHFFS--EGVSVAVQWP 544 (667)
Q Consensus 506 ~I~iWd~~~~~~--~~---~~~~~~~~~~~~fs~--dg~~lav~w~ 544 (667)
.|+||+..++.. .. ..+....+.++.|+| ++.+||.+..
T Consensus 272 ~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 272 VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 999999987632 11 122222566778888 6777776544
No 23
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.4e-34 Score=333.91 Aligned_cols=279 Identities=16% Similarity=0.259 Sum_probs=236.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+...+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-------------------------------------- 44 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-------------------------------------- 44 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT--------------------------------------
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC--------------------------------------
Confidence 345678899999999999999999999999999999999986
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs 369 (667)
+..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++.+|++++
T Consensus 45 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 116 (814)
T 3mkq_A 45 -------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGS 116 (814)
T ss_dssp -------TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEE
T ss_pred -------CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEc
Confidence 23467788999999999999999 99999999999999999999988886 999999999999 999999999
Q ss_pred cCCeEEEEecCCC-eEE-EecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 370 IDGKVRIWGVCEK-RVV-DWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 370 ~Dg~v~iwdl~~~-~~~-~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
.||.|++||+.++ ... ....|...|.+++|+| +++.|++++.||.|++||+.+........ ..+...+..+
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~------~~~~~~v~~~ 190 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT------TGQERGVNYV 190 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE------CCCTTCCCEE
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe------cCCCCCEEEE
Confidence 9999999999886 443 4567889999999999 89999999999999999998765543311 1123779999
Q ss_pred EEcc--CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956 447 QFSR--DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK 523 (667)
Q Consensus 447 ~~sp--~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~ 523 (667)
+|+| ++ .++++++.|+.|++||............|...|.+++|+|++++|++++.||.|++||+.++...... ..
T Consensus 191 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 191 DYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 9999 74 79999999999999998765544444458889999999999999999999999999999987654432 23
Q ss_pred cCccceeEEccCCc--EEEEec
Q 005956 524 NSVRSCEHFFSEGV--SVAVQW 543 (667)
Q Consensus 524 ~~~~~~~~fs~dg~--~lav~w 543 (667)
.....++.|+|+|. +++++.
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEE
T ss_pred CCcEEEEEEccCCCceEEEEEe
Confidence 34566778999987 455543
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-33 Score=291.98 Aligned_cols=246 Identities=17% Similarity=0.321 Sum_probs=206.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+++|...|++++|+|+|++|++|+.|++|+|||+.++
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---------------------------------------- 97 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---------------------------------------- 97 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----------------------------------------
Confidence 4578899999999999999999999999999999999862
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC-----CCCEEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI-----DDNYFISG 368 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-----d~~~l~sg 368 (667)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+..........|...|.++.|.|. ++.+|+++
T Consensus 98 -----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 98 -----ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp -----EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred -----CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 3467788999999999999999 999999999999999986555455569999999999983 23489999
Q ss_pred ecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 369 SIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
+.|+.|++||+.+.+... +..|...|.+++|+|+|++|++|+.||.|++||+.+.+.... + .. ...|.+++
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~--~~-----~~~v~~~~ 244 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-L--SA-----QDEVFSLA 244 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-E--EC-----CSCEEEEE
T ss_pred eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-e--cC-----CCcEEEEE
Confidence 999999999999987654 678999999999999999999999999999999987765432 2 11 26799999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCcceeeEEeC--------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIHKFKGL--------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
|+|++ .++++++. +.+++|++.......... .+...+.+++|+|||++|++|+.||.|+|||+.+.
T Consensus 245 ~sp~~-~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 245 FSPNR-YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECSSS-SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EcCCC-CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99996 67776665 459999976433222211 23567899999999999999999999999998754
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-33 Score=342.63 Aligned_cols=396 Identities=17% Similarity=0.253 Sum_probs=292.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc-----------eeeeeeCCCCCcc-ccCCCCeEEecccC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA-----------ASCKSFTDDGGFG-SNAKEGKIKFGKKK 282 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 282 (667)
...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++. +.++.|++++..+ +...++.+.+|+..
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999998653 3455667766433 34455666666544
Q ss_pred CCCceeecCCCcccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEe
Q 005956 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFN 358 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 358 (667)
. .+.+..+.+|...|.+++|+|+ + .+++++.|++|++||+.+++++..+. |...|++++|+
T Consensus 688 ~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 688 T---------------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752 (1249)
T ss_dssp T---------------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred C---------------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence 2 3557788899999999999994 3 88999999999999999999888774 99999999999
Q ss_pred eCCCCEEEEEecCCeEEEEecCCCeEEEe---------------------------------------------------
Q 005956 359 PIDDNYFISGSIDGKVRIWGVCEKRVVDW--------------------------------------------------- 387 (667)
Q Consensus 359 p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~--------------------------------------------------- 387 (667)
| ++++|++++.||+|++||+.+++....
T Consensus 753 p-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~ 831 (1249)
T 3sfz_A 753 P-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831 (1249)
T ss_dssp S-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred c-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence 9 999999999999999999977643211
Q ss_pred -----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 388 -----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 388 -----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
..+...|.+++|+|+++.+++++.+|.|++||+.+...... ...|...|++++|+|+| .++++++.|
T Consensus 832 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~d 903 (1249)
T 3sfz_A 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDD 903 (1249)
T ss_dssp EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee-------cCCCccceEEEEECCCC-CEEEEEeCC
Confidence 14567789999999999999999999999999987654322 12345778888888875 678888888
Q ss_pred CcEEEEECC-----------------------------------------------------------------------
Q 005956 463 SKLRILDGV----------------------------------------------------------------------- 471 (667)
Q Consensus 463 g~I~iwd~~----------------------------------------------------------------------- 471 (667)
+.|++||+.
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 888888732
Q ss_pred --------cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 472 --------DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 472 --------~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
..........|...|.+++|+|+|++|++++.||.|++||+.++..............+.|++++.+++.+.
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence 111111223477889999999999999999999999999999988766656666677789999888776655
Q ss_pred CCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhH
Q 005956 544 PGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQ 622 (667)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.+. ++++....... . ..+..+........|||++.+++.+...|. ..|........ . . +
T Consensus 1064 dg~---v~vwd~~~~~~--~--~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~----~-~--l------ 1123 (1249)
T 3sfz_A 1064 DGT---VKVWNVITGRI--E--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL----H-E--L------ 1123 (1249)
T ss_dssp SSE---EEEEETTTTCC--C--EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS----B-C--C------
T ss_pred CCc---EEEEECCCCce--e--EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee----e-e--e------
Confidence 432 22222111100 0 111223344567789999999998888777 44654422111 0 0 0
Q ss_pred HHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956 623 RLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
..+- ........++.|..|||++.||.|++|.
T Consensus 1124 --~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1124 --KGHN---GCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp --CCCS---SCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred --ccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 0000 0011244577899999999999999996
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=289.79 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=236.0
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
......|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------------------------------------- 63 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-------------------------------------- 63 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--------------------------------------
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------------------------------
Confidence 344467889999999999999999999999999999999986
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
.+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+.+...|.+++|+| ++++|++++.
T Consensus 64 -------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 135 (369)
T 3zwl_B 64 -------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILD 135 (369)
T ss_dssp -------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSSEEEEEEC
T ss_pred -------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEcc-CCCEEEEecC
Confidence 34567788999999999999998 99999999999999999999999999999999999999 9999999999
Q ss_pred C-----CeEEEEecCCCeE------------EEecccCC--ceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe
Q 005956 371 D-----GKVRIWGVCEKRV------------VDWADVRD--VISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD 431 (667)
Q Consensus 371 D-----g~v~iwdl~~~~~------------~~~~~~~~--~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~ 431 (667)
+ +.|++||+..... .....+.. .+.+++|+|+++.|++++.+|.|++||+++.......+.
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence 9 9999999876531 12333444 899999999999999999999999999987433333332
Q ss_pred eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC------
Q 005956 432 FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC------ 505 (667)
Q Consensus 432 ~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg------ 505 (667)
. +...|.+++|+|++ .+|++++.|+.|++||+.......... +...+..++|+|+++++++++.++
T Consensus 216 ~------~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 L------HEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp C------CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC------
T ss_pred c------CCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEE
Confidence 2 34789999999995 899999999999999988644433332 678899999999999999999988
Q ss_pred --------cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCC
Q 005956 506 --------RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 506 --------~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
.|++||+.+++..... .....+.++.|+|+|.+|+++..+
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 8999999988765443 344566778999999999987654
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-33 Score=297.36 Aligned_cols=249 Identities=17% Similarity=0.299 Sum_probs=202.5
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
...+|.+.|++++|+|+++ +++++.||+|+|||+.++...
T Consensus 89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~--------------------------------------- 128 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL--------------------------------------- 128 (357)
T ss_dssp EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-----------------------------------------------
T ss_pred ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee---------------------------------------
Confidence 3457999999999999986 556788999999999863221
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
........+|...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....++++++.|++|
T Consensus 129 --~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 129 --LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp --CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred --EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 01123455899999999999999 99999999999999999999998886 899999999999444689999999999
Q ss_pred EEEecCCCeEEE---ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 375 RIWGVCEKRVVD---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 375 ~iwdl~~~~~~~---~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
++||+++++... ...+...+++++|+|+ +.+|++|+.|+.|++||+++.+.... ...+...|++++|+|
T Consensus 207 ~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~l~~sp 279 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-------SAVHSQNITGLAYSY 279 (357)
T ss_dssp EECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-------ECCCSSCEEEEEECS
T ss_pred EEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-------EeccceeEEEEEEcC
Confidence 999999887654 3446678999999997 56888999999999999988765432 223457899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
++..+|++++.|++|+|||+..... +....|...|++++|+| ++++|++++.||.|++|++...
T Consensus 280 ~~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 280 HSSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9878899999999999999875433 33346899999999998 7999999999999999999764
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.1e-33 Score=294.54 Aligned_cols=246 Identities=18% Similarity=0.373 Sum_probs=203.2
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+.+|.+.|++++|+|++.+|++|+.|++|+|||+.+
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~----------------------------------------- 107 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT----------------------------------------- 107 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS-----------------------------------------
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------------------------------------
Confidence 356789999999999999999999999999999999986
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCC--------
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDD-------- 362 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~-------- 362 (667)
.+.+..+.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++
T Consensus 108 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 182 (343)
T 2xzm_R 108 ----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQP 182 (343)
T ss_dssp ----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCS
T ss_pred ----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCC
Confidence 24467788999999999999999 9999999999999999854433333 4888999999999 55
Q ss_pred --CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 363 --NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 363 --~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
.+|++++.|++|++||........+..|...|.+++|+|+|++|++|+.||.|++||+.........+. +.
T Consensus 183 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~ 255 (343)
T 2xzm_R 183 FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-------AG 255 (343)
T ss_dssp SCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-------CS
T ss_pred CCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-------CC
Confidence 799999999999999966555556778999999999999999999999999999999954443322221 13
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--e--eEEe---------CCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--H--KFKG---------LPKSGSQMSASFTTTGKHIISIGDDCRV 507 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~--~~~~---------~~~~~~v~~v~~spdg~~l~sgs~Dg~I 507 (667)
..|.+++|+|++ .++ +++.|+.|++||+.... . .+.. ..|...+.+++|+|+|++|++|+.||.|
T Consensus 256 ~~v~~v~~sp~~-~~l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 256 STINQIAFNPKL-QWV-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp SCEEEEEECSSS-CEE-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred CcEEEEEECCCC-CEE-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence 569999999996 555 45668889999976422 1 2221 1467789999999999999999999999
Q ss_pred EEEEcCCC
Q 005956 508 YVWNYDEL 515 (667)
Q Consensus 508 ~iWd~~~~ 515 (667)
++|+++++
T Consensus 334 ~~w~~~~g 341 (343)
T 2xzm_R 334 RTFSFETS 341 (343)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 99998764
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3e-32 Score=284.65 Aligned_cols=283 Identities=16% Similarity=0.260 Sum_probs=229.4
Q ss_pred cccceeeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
+.+..+|+||++.|++|+|+|+ +++||||+.||+|+|||+.+....
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------------------------------- 74 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN--------------------------------- 74 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence 3455689999999999999997 689999999999999999863211
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
...+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+.+++ ++++|+++
T Consensus 75 -------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~ 146 (340)
T 4aow_A 75 -------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSG 146 (340)
T ss_dssp -------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee-cCccceee
Confidence 123466788999999999999999 99999999999999999988877765 777888999999 89999999
Q ss_pred ecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 369 SIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
+.|+.+++||+....... ...+...+..++|++++ ..+++++.|+.|++||+++...... ...|...|+
T Consensus 147 s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-------~~~h~~~v~ 219 (340)
T 4aow_A 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-------HIGHTGYLN 219 (340)
T ss_dssp ETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEE
T ss_pred cCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------ecCCCCcEE
Confidence 999999999998766543 55678899999999865 5688899999999999988765432 223458899
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc----
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS---- 520 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~---- 520 (667)
+++|+|++ .+|++++.|+.|++||+.......... +...+.+++|+|++.++ +++.|+.|+|||+++......
T Consensus 220 ~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~ 296 (340)
T 4aow_A 220 TVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE 296 (340)
T ss_dssp EEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC
T ss_pred EEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccc
Confidence 99999996 899999999999999998665544443 45689999999987655 556799999999987654221
Q ss_pred ------ccccCccceeEEccCCcEEEEecCC
Q 005956 521 ------KQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 521 ------~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
......+.+++|+|||.+|+++..+
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 1223445678999999998886543
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=290.42 Aligned_cols=256 Identities=20% Similarity=0.326 Sum_probs=206.4
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
..+|.+.|++++|+|+|++||+|+.|++|+||++.....
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~----------------------------------------- 95 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF----------------------------------------- 95 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-----------------------------------------
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-----------------------------------------
Confidence 368999999999999999999999999999999875211
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..+..+.+|...|.+++|+|++ +|++++.|++|++||+.++. ++..+ .|...|.+++|+| ++.+|++|+.|+
T Consensus 96 --~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~ 172 (345)
T 3fm0_A 96 --ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172 (345)
T ss_dssp --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTS
T ss_pred --EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCC
Confidence 2356788999999999999999 99999999999999998763 34444 4899999999999 999999999999
Q ss_pred eEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee--------eE-eeccccCcCC
Q 005956 373 KVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE--------KV-DFHDRKKTSG 440 (667)
Q Consensus 373 ~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~--------~~-~~~~~~~~~~ 440 (667)
+|++||+.++.. ..+..|...|.+++|+|+|++|++|+.||+|++||......... .. ........|.
T Consensus 173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 999999988753 34678899999999999999999999999999999754321110 00 0000011256
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc------eeeE---EeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDV------IHKF---KGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVW 510 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~------~~~~---~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iW 510 (667)
..|.+++|+|++ ..|++++.|+.|++|+.... ...+ ....|...|.+++|+|++ .+||+|+.||.|++|
T Consensus 253 ~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 253 RTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp SCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred CcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 789999999996 78999999999999986421 1111 123588999999999998 499999999999999
Q ss_pred EcCCCCcc
Q 005956 511 NYDELCFP 518 (667)
Q Consensus 511 d~~~~~~~ 518 (667)
++.+.+..
T Consensus 332 ~~~~~~~~ 339 (345)
T 3fm0_A 332 KYQRPEGL 339 (345)
T ss_dssp EECC----
T ss_pred EecCCCCc
Confidence 99887643
No 31
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.3e-34 Score=295.15 Aligned_cols=248 Identities=20% Similarity=0.291 Sum_probs=198.6
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+.+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 45679999999999999999999999999999999975211
Q ss_pred cccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFIS 367 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~s 367 (667)
..+..+.+|.+.|.+++|+++ + +|++|+.|++|+|||+.+++ .+..+ .|...|.+++|+| + +.+|++
T Consensus 48 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~las 122 (316)
T 3bg1_A 48 ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILAC 122 (316)
T ss_dssp ----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEE
T ss_pred ----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEE
Confidence 135678899999999999863 5 99999999999999999874 44444 4899999999999 5 789999
Q ss_pred EecCCeEEEEecCCCeE----EEecccCCceEEEEEeeC-----------------CCEEEEEecCCcEEEEEecCCcce
Q 005956 368 GSIDGKVRIWGVCEKRV----VDWADVRDVISAICYIPD-----------------GKGFIVGSITGTCHFYKASGNDLK 426 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~----~~~~~~~~~v~~v~~spd-----------------g~~l~~gs~dg~i~l~d~~~~~~~ 426 (667)
|+.|++|++||+..+.. .....|...+.+++|+|+ +++|++|+.|+.|++||++.....
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 99999999999987632 224567788999999997 478999999999999999754211
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCC---CeEEEEEeCCCcEEEEECCcc------eeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDE---SQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g---~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
..... ...|...|.+++|+|++ ..+|++++.|++|+|||+... ...+.. |...|.+++|+|++++
T Consensus 203 ~~~~~----l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 203 KEEQK----LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANI 276 (316)
T ss_dssp EEEEC----CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCC
T ss_pred ceeee----cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCE
Confidence 11111 23456899999999985 368999999999999997641 123333 6789999999999999
Q ss_pred EEEEeCCCcEEEEEcC
Q 005956 498 IISIGDDCRVYVWNYD 513 (667)
Q Consensus 498 l~sgs~Dg~I~iWd~~ 513 (667)
||+++.|+.|+||+..
T Consensus 277 las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEESSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEEC
Confidence 9999999999999975
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.1e-32 Score=282.02 Aligned_cols=273 Identities=15% Similarity=0.248 Sum_probs=230.2
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
.+|.+.|++++|+|++++|++++ ||.|+||++.+...
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~------------------------------------------ 84 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN------------------------------------------ 84 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC------------------------------------------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc------------------------------------------
Confidence 47999999999999999999999 99999999986321
Q ss_pred CCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 299 ESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 299 ~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
...+..+. +|...|.+++|+|++ +|++++.|+.|++||+.+++ ....+ .|...|.+++|+| ++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 163 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDG 163 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCC
Confidence 12233333 789999999999999 89999999999999999887 34444 4888999999999 999999999999
Q ss_pred eEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 373 KVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 373 ~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.|++||+.+++... +..|...+.+++|+|+++.|++++.||.|++||+++.+.... +. +...+.+++|+|+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~-------~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HD-------FTSQIFSLGYCPT 235 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EE-------CSSCEEEEEECTT
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee-ec-------CCCceEEEEECCC
Confidence 99999999988765 556888999999999999999999999999999987765432 11 2467999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeE
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEH 531 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 531 (667)
+ .++++++.++.|++||+..... .....|...+.+++|+|++++|++++.||.|++||+.+++.............+.
T Consensus 236 ~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~ 313 (337)
T 1gxr_A 236 G-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313 (337)
T ss_dssp S-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred C-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE
Confidence 6 8999999999999999875433 3445588999999999999999999999999999999987765554556677789
Q ss_pred EccCCcEEEEecCC
Q 005956 532 FFSEGVSVAVQWPG 545 (667)
Q Consensus 532 fs~dg~~lav~w~~ 545 (667)
|+|++..++++...
T Consensus 314 ~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 314 ISVDDKYIVTGSGD 327 (337)
T ss_dssp ECTTSCEEEEEETT
T ss_pred ECCCCCEEEEecCC
Confidence 99999998886543
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=302.88 Aligned_cols=280 Identities=16% Similarity=0.275 Sum_probs=223.9
Q ss_pred ccccEEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 221 HKGCIWTLKFSPDGR-YLASG----------GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 221 H~~~I~~v~fspdg~-~Latg----------s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
|...|.+++|+|+|+ +||+| +.|+.|+||++.+...
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------------------------------- 57 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------------------------------- 57 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG---------------------------------
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC---------------------------------
Confidence 445789999999997 99999 8999999999986321
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC----CeEeEEe-eCCCcEEEEEEeeCCCC
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVF-DHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----~~~~~~~-~h~~~V~~l~f~p~d~~ 363 (667)
.+++..+ .|...|.+++|+|++ +|++++.|+.|++||+.+ .+.+..+ .|...|++++|+|.+++
T Consensus 58 ---------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 127 (416)
T 2pm9_A 58 ---------EKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN 127 (416)
T ss_dssp ---------CSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT
T ss_pred ---------CcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC
Confidence 0122223 588899999999999 999999999999999987 3466655 49999999999993389
Q ss_pred EEEEEecCCeEEEEecCCCe------EE-E---ecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 364 YFISGSIDGKVRIWGVCEKR------VV-D---WADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~------~~-~---~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
+|++++.|+.|++||+.+++ .. . ...|...|.+++|+|+ +..|++++.||.|++||+++.+.... +..
T Consensus 128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~ 206 (416)
T 2pm9_A 128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH-LSY 206 (416)
T ss_dssp BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEE-ECC
T ss_pred EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceE-Eec
Confidence 99999999999999999876 22 1 3567889999999999 78999999999999999988665332 222
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCcc---eeeEEeCCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVDV---IHKFKGLPKSGSQMSASFTT-TGKHIISIGDDC 505 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg---~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~Dg 505 (667)
+.....+...|++++|+|++..++++++.|+ .|++||+... ...+. ..|...|.+++|+| ++++|++++.||
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 2222223588999999999777999999999 9999998753 23332 04888999999999 999999999999
Q ss_pred cEEEEEcCCCCccccc-cccCccceeEEccCC-cEEEEecCC
Q 005956 506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEG-VSVAVQWPG 545 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg-~~lav~w~~ 545 (667)
.|++||+.+++..... .....+..+.|+|++ .+++++..+
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence 9999999988764433 334556678999999 777776543
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9e-33 Score=296.80 Aligned_cols=250 Identities=24% Similarity=0.430 Sum_probs=208.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|...|++++|+|+|++||+|+.||+|+|||+.+.
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--------------------------------------------- 155 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--------------------------------------------- 155 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------------------------------------
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------------------------------------------
Confidence 34556999999999999999999999999999862
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd 378 (667)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.++++...+.+...+.+++|+|.++++|++|+.|+.|++||
T Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd 235 (393)
T 1erj_A 156 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235 (393)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 3456788999999999999999 999999999999999999999999999999999999997889999999999999999
Q ss_pred cCCCeEEEe--------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeee-----EeeccccCcCCCCeEE
Q 005956 379 VCEKRVVDW--------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEK-----VDFHDRKKTSGNKITG 445 (667)
Q Consensus 379 l~~~~~~~~--------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~-----~~~~~~~~~~~~~I~~ 445 (667)
+.+++.+.. ..|...|.+++|+|+|++|++|+.||.|++||++........ .........|...|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 999876642 457889999999999999999999999999999864322110 0000012234578999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC------CCCEEEEEeCCCcEEEEEcCCC
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT------TGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp------dg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
++|+|++ .+|++++.|+.|++||............|...|.+++|++ ++++|++|+.||.|+||++...
T Consensus 316 ~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 316 VATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999996 8999999999999999876544444445889999999976 6889999999999999998653
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=288.70 Aligned_cols=254 Identities=24% Similarity=0.361 Sum_probs=193.5
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+|.+.|++++|+|++++||+|+.|++|+||++...... ....
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------------------------~~~~ 97 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------------------------TFEM 97 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------------------------CCC
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------------------------cccc
Confidence 49999999999999999999999999999998641100 0012
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
..+..+.+|...|.+++|+|++ +|++|+.|++|++||+.. .+++..+. |...|.+++|+| ++.+|++|+.|++
T Consensus 98 ~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~ 176 (330)
T 2hes_X 98 DLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDT 176 (330)
T ss_dssp EEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred eeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCe
Confidence 3466788999999999999999 999999999999999943 24566664 899999999999 9999999999999
Q ss_pred EEEEecCCC--eE-EEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee-eEee-ccccCcCCCCeEEE
Q 005956 374 VRIWGVCEK--RV-VDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-KVDF-HDRKKTSGNKITGI 446 (667)
Q Consensus 374 v~iwdl~~~--~~-~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~-~~~~~~~~~~I~~l 446 (667)
|++||+.++ +. ..+..|...|.+++|+|+ +..|++|+.|++|++||+........ .... ......|...|.++
T Consensus 177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred EEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 999999876 33 346778999999999998 77899999999999999975421110 1011 11112256889999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcce--eeE-EeCCCCC-CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVI--HKF-KGLPKSG-SQMSASFTT--TGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~v~~v~~sp--dg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+|++++ +|++++.|+.|+|||..... ... ....|.. .|.+++|+| ++++|++|+.||.|+||+++.
T Consensus 257 ~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 257 AWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 999764 89999999999999976432 111 1234665 899999999 789999999999999999865
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-32 Score=293.19 Aligned_cols=282 Identities=11% Similarity=0.175 Sum_probs=223.5
Q ss_pred ccccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
.....+.+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+....
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------------- 109 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------------- 109 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------------------------
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------------------------
Confidence 445566888999999999999999 99999999999999999863211
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~ 364 (667)
....+.+|...|.+++|+| ++ +|++++.|++|++||+.+........ |...|.+++|+| ++++
T Consensus 110 -----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 177 (383)
T 3ei3_B 110 -----------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSV-SRQM 177 (383)
T ss_dssp -----------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEET-TTTE
T ss_pred -----------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECC-CCCE
Confidence 1122347999999999999 55 99999999999999999644433333 447899999999 9999
Q ss_pred EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
|++|+.|+.|++||+....+..+..|...|.+++|+|+++ .|++|+.||.|++||+++.......+... .+...|
T Consensus 178 l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v 253 (383)
T 3ei3_B 178 LATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPV 253 (383)
T ss_dssp EEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCE
T ss_pred EEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCce
Confidence 9999999999999997666667888999999999999999 89999999999999999744322211111 235899
Q ss_pred EEEEEcc-CCCeEEEEEeCCCcEEEEECCc--ceeeEEeCC-----C----------CCCeEEEEEcCCCCEEEEEeCCC
Q 005956 444 TGIQFSR-DESQRIMITSEDSKLRILDGVD--VIHKFKGLP-----K----------SGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 444 ~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~-----~----------~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
++++|+| ++ .+|++++.|+.|++||+.+ ....+..+. + ...+..++|+|+|++ +++.|+
T Consensus 254 ~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 254 NAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEEEECTTTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC
T ss_pred EEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC
Confidence 9999999 75 8999999999999999874 334444321 1 134555677777776 778999
Q ss_pred cEEEEEcCCCCcccccc---ccCccceeEEccCCcEEEEec
Q 005956 506 RVYVWNYDELCFPSSKQ---KNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~~---~~~~~~~~~fs~dg~~lav~w 543 (667)
.|+|||+.+++...... ......++.|+|+|.+||++.
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp CEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred eEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 99999999887644432 345667779999999999984
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=290.24 Aligned_cols=255 Identities=20% Similarity=0.298 Sum_probs=214.4
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
+.+.+.+|.+.|++++|+|++++||+|+.||.|+||++....
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------------- 44 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------------------- 44 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--------------------------------------
Confidence 356788999999999999999999999999999999997321
Q ss_pred cccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEee-CCCcEEEEEEeeCC--CCEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVFD-HHNYVTCVQFNPID--DNYF 365 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~~-h~~~V~~l~f~p~d--~~~l 365 (667)
...+..+.+|...|++++|+++ + +|++++.|++|++||+.+++ .+..+. |...|.+++|+| + +.+|
T Consensus 45 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l 118 (379)
T 3jrp_A 45 -----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLL 118 (379)
T ss_dssp -----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEE
T ss_pred -----ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEE
Confidence 2345678899999999999876 6 99999999999999999986 455554 889999999999 7 8999
Q ss_pred EEEecCCeEEEEecCCCe---EEEecccCCceEEEEEee-------------CCCEEEEEecCCcEEEEEecCCcceeee
Q 005956 366 ISGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEK 429 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~sp-------------dg~~l~~gs~dg~i~l~d~~~~~~~~~~ 429 (667)
++++.|+.|++||+..+. ......+...|.+++|+| ++..|++|+.||.|++||+++.......
T Consensus 119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence 999999999999998873 345667889999999999 6999999999999999999877654331
Q ss_pred EeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcc-----eeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 430 VDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
.. ....|...|++++|+|++ +.+|++++.|+.|++||+... ........+...+.+++|+|+|++|++++
T Consensus 199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 11 123346889999999994 489999999999999998753 23333344788999999999999999999
Q ss_pred CCCcEEEEEcCCC
Q 005956 503 DDCRVYVWNYDEL 515 (667)
Q Consensus 503 ~Dg~I~iWd~~~~ 515 (667)
.||.|+||++...
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 9999999999854
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-32 Score=314.72 Aligned_cols=283 Identities=16% Similarity=0.252 Sum_probs=229.7
Q ss_pred cccceeeccccccEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
+.....+++|++.|++|+|+|++ .+|+||+.||+|+||++......
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------------------------- 418 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------------------------- 418 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence 34455789999999999999875 79999999999999998752110
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
.......+.+|...|.+++|+|++ +|++|+.|++|+|||+.++.++..+. |...|.+++|+| ++++|++|
T Consensus 419 -------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~ 490 (694)
T 3dm0_A 419 -------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSA 490 (694)
T ss_dssp -------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEE
T ss_pred -------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEE
Confidence 012346788999999999999999 99999999999999999999888875 999999999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEEe----cccCCceEEEEEeeCC--CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDG--KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~----~~~~~~v~~v~~spdg--~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.|++|++||+........ ..|...|.+++|+|++ ..+++|+.||.|++||+++.+.... ...|...
T Consensus 491 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------~~~h~~~ 563 (694)
T 3dm0_A 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------LAGHTGY 563 (694)
T ss_dssp ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSC
T ss_pred eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------EcCCCCC
Confidence 9999999999877655443 3577889999999987 5899999999999999987665322 2234588
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ 522 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~ 522 (667)
|++++|+|++ .+|++++.|+.|++||+.+........ +...+.+++|+|++.+|++++ |+.|+|||+.++.......
T Consensus 564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEC
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhc
Confidence 9999999996 899999999999999998765554443 567899999999999888876 5669999999875432110
Q ss_pred c--------------------cCccceeEEccCCcEEEEecCC
Q 005956 523 K--------------------NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 523 ~--------------------~~~~~~~~fs~dg~~lav~w~~ 545 (667)
. ......+.|+|||.+|+++..+
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp CCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 0 0113457899999998886544
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.2e-32 Score=306.52 Aligned_cols=398 Identities=17% Similarity=0.138 Sum_probs=273.8
Q ss_pred ccceeecccccc-EEEEEEcC--CCCEEEEEECCCcEEEEEcCCC-------------------ceeeeeeCCCCCcccc
Q 005956 213 YTSQEIQAHKGC-IWTLKFSP--DGRYLASGGEDGVVRIWHVTSV-------------------AASCKSFTDDGGFGSN 270 (667)
Q Consensus 213 ~~~~~l~~H~~~-I~~v~fsp--dg~~Latgs~Dg~I~vWdv~~~-------------------~~~~~~~~~~~~~~~~ 270 (667)
...+.+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ ...++.|.+++..++.
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 355678899999 99999999 9999999999999999999633 2233444555433322
Q ss_pred CCC-----CeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEe
Q 005956 271 AKE-----GKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCL 343 (667)
Q Consensus 271 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~ 343 (667)
... +.+.+++ ..+.+..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++
T Consensus 134 ~~~~~~~~~~v~~~d-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 196 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD-----------------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 196 (615)
T ss_dssp EECCSSCSEEEEETT-----------------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred eccCCCCccEEEEEE-----------------CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee
Confidence 111 2333332 234677888999999999999998 7999999999999999999999
Q ss_pred EEee-CCC---cEEEEEEeeCC-CCEEEEEecCCeEEEEecCCCeEEEec-----ccCCceEEEEEeeCCCEEEEEecCC
Q 005956 344 NVFD-HHN---YVTCVQFNPID-DNYFISGSIDGKVRIWGVCEKRVVDWA-----DVRDVISAICYIPDGKGFIVGSITG 413 (667)
Q Consensus 344 ~~~~-h~~---~V~~l~f~p~d-~~~l~sgs~Dg~v~iwdl~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~gs~dg 413 (667)
..+. |.. .|++++|+| + +++|++++.|+.|++||+.+++.+... .|...|.+++|+ ++++|++++.||
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 8886 777 899999999 7 999999999999999999999887655 788999999999 999999999999
Q ss_pred cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCC----------
Q 005956 414 TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS---------- 483 (667)
Q Consensus 414 ~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~---------- 483 (667)
.|++||+.+.+.... +..+ .......+.++.|. + +.++++++.|+.|++||+...........|.
T Consensus 275 ~i~~wd~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~-~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 349 (615)
T 1pgu_A 275 TIRVWDVTTSKCVQK-WTLD--KQQLGNQQVGVVAT-G-NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349 (615)
T ss_dssp EEEEEETTTTEEEEE-EECC--TTCGGGCEEEEEEE-E-TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred cEEEEECCCCcEEEE-EcCC--CCcccCceeEEEeC-C-CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence 999999987665432 2222 12233678888886 4 3799999999999999987433222222233
Q ss_pred -----------------------CCeEEEEEcCC----------------------------------------------
Q 005956 484 -----------------------GSQMSASFTTT---------------------------------------------- 494 (667)
Q Consensus 484 -----------------------~~v~~v~~spd---------------------------------------------- 494 (667)
..|.+++| ++
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 428 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCc
Confidence 33333333 22
Q ss_pred ---------------------------CCEEEEEeC-CCcEEEEEcCCCCc--cccccccCccceeEEccCCcEEEEecC
Q 005956 495 ---------------------------GKHIISIGD-DCRVYVWNYDELCF--PSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 495 ---------------------------g~~l~sgs~-Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+++|++++. |+.|++||+.++.. .........+.++.|+|+|.+|+++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC
Confidence 344445555 55555555555433 122233455667899999999998765
Q ss_pred CCCcccccccCCCCCCcCccCcCCCC-CCcccCCCcccC----------CCCCCCCCCCCCC-CCCCCCcCCCCCCcccC
Q 005956 545 GIGTEQKSLCSSSLRDCSQKWDNLET-APWIRDSERFSL----------GSWFSNDGPCRGS-ATWPAEKLPLWDVTIDS 612 (667)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~fS~----------~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~ 612 (667)
... ++++....... . ..+.. +........|+| ++.+++.+...|. ..|..+.... ...
T Consensus 509 dg~--i~iw~~~~~~~-~---~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~- 578 (615)
T 1pgu_A 509 MGK--ILLYDLQSREV-K---TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK---IIK- 578 (615)
T ss_dssp TSC--EEEEETTTTEE-E---ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC---CEE-
T ss_pred CCe--EEEeeCCCCcc-e---eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce---ech-
Confidence 432 22222111100 0 11122 334556778999 8999998887776 4566543211 000
Q ss_pred CCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeeee
Q 005956 613 DGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTFH 659 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f~ 659 (667)
.++.|... ......++.|. |||++.||.|++|.
T Consensus 579 ----------~~~~h~~~---v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 579 ----------ALNAHKDG---VNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp ----------ETTSSTTC---EEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ----------hhhcCccc---eEEEEEcCCCC-eEEecCCceEEEEe
Confidence 01111111 11244567888 99999999999996
No 40
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-32 Score=282.10 Aligned_cols=247 Identities=21% Similarity=0.279 Sum_probs=206.5
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+..|..+|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~---------------------------------------- 86 (304)
T 2ynn_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT---------------------------------------- 86 (304)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence 4567789999999999999999999999999999999986
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEe-eCCCcEEEEEEeeCCCCEEEEEec
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVF-DHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
.+.+..+.+|...|.+++|+|++ +|++|+.|++|++||+.++ .+...+ .|...|.+++|+|.++.+|++|+.
T Consensus 87 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 87 -----GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred -----CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 34467788999999999999999 9999999999999999887 444555 499999999999966789999999
Q ss_pred CCeEEEEecCCCeEEE--ecccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 371 DGKVRIWGVCEKRVVD--WADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|++|++||+.+..... ...+...+..++|+| ++.+|++|+.||.|++||+++...... + ..|...|+++
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~---~----~~h~~~v~~~ 234 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---L----EGHMSNVSFA 234 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE---E----ECCSSCEEEE
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee---e----CCCCCCEEEE
Confidence 9999999998765432 334567899999987 778999999999999999987765332 2 2345789999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~ 514 (667)
+|+|++ .+|++++.|+.|++||..+.........+...+.+++|+|++. +|++|+.|| +.+|++.+
T Consensus 235 ~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 235 VFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 999996 7999999999999999886554444445788999999999885 577777555 77888765
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.2e-33 Score=302.76 Aligned_cols=281 Identities=14% Similarity=0.171 Sum_probs=218.8
Q ss_pred cceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 214 TSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
+.+...+|...|+||+|+| ++++||+|+.||.|+|||+.+...
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------------------------------------ 154 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------------------------------------ 154 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------------------------------------
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------------------------------------
Confidence 3455678999999999999 567999999999999999975321
Q ss_pred CcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s 367 (667)
.....+.+|.+.|++|+|+| ++ +|++|+.|++|+|||+.++....... +...+.+++|+| ++++|++
T Consensus 155 -------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 226 (435)
T 4e54_B 155 -------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA-SSRMVVT 226 (435)
T ss_dssp -------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET-TTTEEEE
T ss_pred -------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC-CCCEEEE
Confidence 22345678999999999998 45 99999999999999998776554443 344688999999 9999999
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|+.||.|++||+++..+..+..|...|++++|+|++. +|++|+.|+.|++||++.......... ...|...|+++
T Consensus 227 g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~----~~~h~~~v~~~ 302 (435)
T 4e54_B 227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY----SLPHRHPVNAA 302 (435)
T ss_dssp ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB----CCBCSSCEEEC
T ss_pred EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE----eeeccccccce
Confidence 9999999999998877777888999999999999886 677899999999999987655432211 23456889999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCC------CCeEEEEEcCCCCEEEEEe------------CCCcEE
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKS------GSQMSASFTTTGKHIISIG------------DDCRVY 508 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~spdg~~l~sgs------------~Dg~I~ 508 (667)
+|+|+| .+|++++.|+.|+|||+...........|. ..+..+.|+|++.++++++ .++.|+
T Consensus 303 ~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 303 CFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp CBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred eECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 999996 899999999999999987543222221121 1234566777777777664 345799
Q ss_pred EEEcCCCCcccc---ccccCccceeEEccCCcEEEEec
Q 005956 509 VWNYDELCFPSS---KQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 509 iWd~~~~~~~~~---~~~~~~~~~~~fs~dg~~lav~w 543 (667)
+||..+++.... .+...+.....|+|+|.+||.+.
T Consensus 382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 999999876433 23344455567999999998764
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-33 Score=299.96 Aligned_cols=251 Identities=12% Similarity=0.134 Sum_probs=195.1
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.++.|.++|++++|+|+|++||+|+.||.|+|||+.+...
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------------------------- 45 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------------------------- 45 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence 3455788999999999999999999999999999985210
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEE-eeCCCcEEEEEEeeCCCCEEEEEecC
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNV-FDHHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~-~~h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
..+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ .... ..|...|++++|+| ++++|++++.|
T Consensus 46 ---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 121 (377)
T 3dwl_C 46 ---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGA 121 (377)
T ss_dssp ---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESS
T ss_pred ---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecC
Confidence 3456678999999999999998 99999999999999999877 3333 35999999999999 99999999999
Q ss_pred CeEEEEecCCCe----EEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-----------eEeeccc
Q 005956 372 GKVRIWGVCEKR----VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDFHDR 435 (667)
Q Consensus 372 g~v~iwdl~~~~----~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-----------~~~~~~~ 435 (667)
+.|++||+.+++ ...+.. |...|++++|+|++++|++|+.||.|++||+........ .-.....
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T 3dwl_C 122 RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201 (377)
T ss_dssp SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence 999999999876 334555 889999999999999999999999999999964331110 0011111
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee----eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
. .|...|++++|+|++ .+|++++.|+.|++||+..... ......|...|.+++|+|++++|++++.++.+ +|+
T Consensus 202 ~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 202 Y-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp C-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred c-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence 2 566889999999996 7999999999999999875432 22233478899999999999999999866655 777
Q ss_pred cCC
Q 005956 512 YDE 514 (667)
Q Consensus 512 ~~~ 514 (667)
...
T Consensus 279 ~~~ 281 (377)
T 3dwl_C 279 GNE 281 (377)
T ss_dssp CCC
T ss_pred eCC
Confidence 654
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=292.97 Aligned_cols=300 Identities=15% Similarity=0.234 Sum_probs=235.6
Q ss_pred ccccccEEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCc---------------------------eeeeeeCCCCC
Q 005956 219 QAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV----TSVA---------------------------ASCKSFTDDGG 266 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv----~~~~---------------------------~~~~~~~~~~~ 266 (667)
..|.+.|++++|+|+|+ +||+|+.||.|+||++ .++. ..++.|.+++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 35679999999999999 9999999999999999 6544 22233333332
Q ss_pred c-cccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE
Q 005956 267 F-GSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN 344 (667)
Q Consensus 267 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~ 344 (667)
. +....++.+.++ +.....+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+.
T Consensus 122 ~l~~~~~dg~i~i~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 122 SIVTGVENGELRLW----------------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEEEEETTSCEEEE----------------ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEEEeCCCeEEEE----------------eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 2 222233333333 23456678888999999999999999 99999999999999999999988
Q ss_pred Eee-CCCc---------------EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEE
Q 005956 345 VFD-HHNY---------------VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFI 407 (667)
Q Consensus 345 ~~~-h~~~---------------V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~ 407 (667)
.+. +... +.++.|+| + ..+++++.++.|++||+.+++... +..+...|.+++|+|++++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 886 4444 89999998 4 578999999999999999877654 567889999999999999999
Q ss_pred EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE
Q 005956 408 VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM 487 (667)
Q Consensus 408 ~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 487 (667)
+++.||.|++||+++...... ...+...|.+++|+|++ ++++++.|+.|++||+...........|...+.
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~-------~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNC-------FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEE-------ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred EEcCCCEEEEEECCCCccceE-------ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 999999999999987654332 12245789999999996 999999999999999886555555545788999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCC--------------------ccccc-cc-cC-ccceeEEccCCcEEEEecC
Q 005956 488 SASFTTTGKHIISIGDDCRVYVWNYDELC--------------------FPSSK-QK-NS-VRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 488 ~v~~spdg~~l~sgs~Dg~I~iWd~~~~~--------------------~~~~~-~~-~~-~~~~~~fs~dg~~lav~w~ 544 (667)
+++|+|++++|++++.||.|++||+.++. ..... .. .. .+..+.|+|++.+|+++..
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 99999999999999999999999998765 22222 22 22 6677899999998887654
Q ss_pred C
Q 005956 545 G 545 (667)
Q Consensus 545 ~ 545 (667)
.
T Consensus 415 d 415 (425)
T 1r5m_A 415 L 415 (425)
T ss_dssp S
T ss_pred C
Confidence 3
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.2e-32 Score=279.13 Aligned_cols=249 Identities=25% Similarity=0.391 Sum_probs=209.1
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+.+|...|++++|+|++++|++|+.||.|+|||+.+
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------------------------------------- 96 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---------------------------------------- 96 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------------------------
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC----------------------------------------
Confidence 3456789999999999999999999999999999999986
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
.+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.|
T Consensus 97 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 170 (312)
T 4ery_A 97 -----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD 170 (312)
T ss_dssp -----CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred -----CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCC
Confidence 24467788999999999999998 99999999999999999999888885 888999999999 99999999999
Q ss_pred CeEEEEecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 372 GKVRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
+.|++||+.+++.+.. ..+...+..++|+|++++|++++.||.|++||+++.+.... +.++.. ........++
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~--~~~~~~~~~~ 245 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---YTGHKN--EKYCIFANFS 245 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---ECSSCC--SSSCCCEEEE
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EEecCC--ceEEEEEEEE
Confidence 9999999999886643 34566799999999999999999999999999987764332 111111 1122233455
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 005956 450 RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYD 513 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~ 513 (667)
+.++.+|++++.||.|++||+...........|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 44458999999999999999886554445555889999999999999999997 69999999865
No 45
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5e-32 Score=282.28 Aligned_cols=257 Identities=18% Similarity=0.266 Sum_probs=212.0
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
+.+.+.+|.+.|++|+|+|++++||+|+.||.|+|||+.+....
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------------------------------ 46 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN------------------------------------ 46 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC------------------------------------
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc------------------------------------
Confidence 45667899999999999999999999999999999999852110
Q ss_pred cccccCCcceeeeccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCC---------eEeEEe-eCCCcEEEEEEeeC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN---------QCLNVF-DHHNYVTCVQFNPI 360 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~---------~~~~~~-~h~~~V~~l~f~p~ 360 (667)
......+.+|...|.+++|+| ++ +|++++.|++|++||+.++ +++..+ .|...|.+++|+|
T Consensus 47 -----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 120 (351)
T 3f3f_A 47 -----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP- 120 (351)
T ss_dssp -----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-
T ss_pred -----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-
Confidence 123567789999999999999 46 9999999999999999886 445555 4899999999999
Q ss_pred C--CCEEEEEecCCeEEEEecCCCeEEE--------------ecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEec
Q 005956 361 D--DNYFISGSIDGKVRIWGVCEKRVVD--------------WADVRDVISAICYIPD---GKGFIVGSITGTCHFYKAS 421 (667)
Q Consensus 361 d--~~~l~sgs~Dg~v~iwdl~~~~~~~--------------~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~ 421 (667)
+ +++|++++.|+.|++||+.+++.+. ...+...+.+++|+|+ +..+++++.++.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 7 9999999999999999998865331 1246678999999997 9999999999999888877
Q ss_pred CCcceeeeEeeccccCcCCCCeEEEEEccCCC---eEEEEEeCCCcEEEEECCcc-------------------------
Q 005956 422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDES---QRIMITSEDSKLRILDGVDV------------------------- 473 (667)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~---~~l~~~s~dg~I~iwd~~~~------------------------- 473 (667)
....... .. ...|...|++++|+|++. .+|++++.||.|++||+...
T Consensus 201 ~~~~~~~-~~----~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (351)
T 3f3f_A 201 DGKLHVA-AK----LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMD 275 (351)
T ss_dssp TSCEEEE-EE----CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------
T ss_pred CCceeee-ee----cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccc
Confidence 6554222 11 233568999999999963 79999999999999997642
Q ss_pred ---------------------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 474 ---------------------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 474 ---------------------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
........|...|.+++|+|++++|++++.||.|+||++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 22233345888999999999999999999999999999998653
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-32 Score=332.69 Aligned_cols=399 Identities=19% Similarity=0.244 Sum_probs=285.7
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcee------------------------eeeeCCCCCcc
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS------------------------CKSFTDDGGFG 268 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~------------------------~~~~~~~~~~~ 268 (667)
.....+.+|.+.|++++|+|++++|++|+.||.|++||+.++... ++.+++++..+
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 345677899999999999999999999999999999999865322 22334444333
Q ss_pred ccCCCCeEEecccCCCCceeecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe
Q 005956 269 SNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF 346 (667)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~ 346 (667)
.....+.+.+++... ...+..+ .+|...|.+++|+|++ .+++++.|++|++||+.++..+..+
T Consensus 814 ~~~~~~~v~~~d~~~---------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 814 IVAAKNKVLLFDIHT---------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp EEEETTEEEEEETTT---------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEcCCcEEEEEecC---------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 333333343333221 1223333 3899999999999999 9999999999999999999988887
Q ss_pred e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC--------------------------------------------
Q 005956 347 D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-------------------------------------------- 381 (667)
Q Consensus 347 ~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-------------------------------------------- 381 (667)
. |...|++++|+| ++++|++++.|+.|++||+.+
T Consensus 879 ~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957 (1249)
T ss_dssp CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEE
T ss_pred CCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEE
Confidence 5 889999999999 999999999999999998542
Q ss_pred -----------------------------------CeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 382 -----------------------------------KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 382 -----------------------------------~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
++. .....|...|++++|+|+|+++++++.||.|++||+.++..
T Consensus 958 ~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 111 11234667789999999999999999999999999987654
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
.. ...+...|.++.|+|++ .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.||
T Consensus 1038 ~~--------~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A 1038 VF--------LQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp EC--------CBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS
T ss_pred EE--------EecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC
Confidence 32 22345889999999975 789999999999999875443333334888999999999999999999999
Q ss_pred cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCCCcccccccCCC--CCCcCccCc---CCCCCCcccCCCc
Q 005956 506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSS--LRDCSQKWD---NLETAPWIRDSER 579 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~--~~~~~~~w~---~~~~~~~~~~~~~ 579 (667)
.|++||+.++...... .....+.++.|+|||.++|++..+.. ++++.... .......+. ....+...+....
T Consensus 1108 ~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 1185 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE--IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185 (1249)
T ss_dssp CCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC--CCEEESSSSCCCCCCCCCC-------CCSCCCEEE
T ss_pred cEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE--EEEEECCCCceEEEeccccccccccccCceEEEEE
Confidence 9999999988764443 34456778899999999999765433 23322211 111110000 0122333456778
Q ss_pred ccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeEeee
Q 005956 580 FSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMIKTF 658 (667)
Q Consensus 580 fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~ir~f 658 (667)
|||++.+++.++ |. ..|.......... . . .+. ........++.|..||+++.||.|++|
T Consensus 1186 fs~dg~~l~s~~--g~v~vwd~~~g~~~~~-~------~--------~~~---~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1186 FSPDSKTLVSAG--GYLKWWNVATGDSSQT-F------Y--------TNG---TNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ECTTSSCEEEES--SSEEEBCSSSCBCCCC-C------C--------CSS---CCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred ECCCCCEEEECC--CeEEEEECCCCceeee-e------e--------ccC---CcccEEEECCCCCEEEEecCCcEEEEE
Confidence 999999998775 43 4566443211100 0 0 000 000124456788889999999999999
Q ss_pred e
Q 005956 659 H 659 (667)
Q Consensus 659 ~ 659 (667)
+
T Consensus 1246 ~ 1246 (1249)
T 3sfz_A 1246 Q 1246 (1249)
T ss_dssp C
T ss_pred e
Confidence 7
No 47
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=325.91 Aligned_cols=191 Identities=13% Similarity=0.108 Sum_probs=153.2
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc----------eeeeeeCCCCC-ccccCCCCeEEecccCCCCc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA----------ASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (667)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.. +..+.|.+ +. +++...++.+.+|+...
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--- 88 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--- 88 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT---
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC---
Confidence 34899999999999999999999999999999987543 33455555 33 44555666666665443
Q ss_pred eeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE------------eeCCCcEE
Q 005956 287 PVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV------------FDHHNYVT 353 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~------------~~h~~~V~ 353 (667)
.+.+..+. |...|++++|+|++ +|++|+.||+|++||+.++++... ..|...|+
T Consensus 89 ------------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 89 ------------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV 155 (902)
T ss_dssp ------------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC
T ss_pred ------------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE
Confidence 23345554 66889999999999 999999999999999998876411 13788999
Q ss_pred EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-c------------------CCceEEEEEeeCCCEEEEEecCCc
Q 005956 354 CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-V------------------RDVISAICYIPDGKGFIVGSITGT 414 (667)
Q Consensus 354 ~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~------------------~~~v~~v~~spdg~~l~~gs~dg~ 414 (667)
+++|+|.++..+++|+.|+.| +||+++++...... + ...|++++|+|+|++|++|+.||.
T Consensus 156 sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 156 SIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp EEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred EEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 999999446799999999999 99999988765332 2 367999999999999999999999
Q ss_pred EEEEEecCCcce
Q 005956 415 CHFYKASGNDLK 426 (667)
Q Consensus 415 i~l~d~~~~~~~ 426 (667)
|++||+++++..
T Consensus 235 i~lWd~~~g~~~ 246 (902)
T 2oaj_A 235 LVFWDANSGHMI 246 (902)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCcEE
Confidence 999999876543
No 48
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=294.31 Aligned_cols=288 Identities=16% Similarity=0.257 Sum_probs=215.8
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|.+.|++++|+|+|++||+|+.||.|+||++.+....... . ....
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-----------~-----------------------~~~~ 71 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-----------S-----------------------RGEY 71 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-----------C-----------------------CCCE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-----------c-----------------------ccce
Confidence 47899999999999999999999999999999863211000 0 0011
Q ss_pred Ccceeeeccc------------cceEEEEecCCC---eEEEEeCCCcEEEEecCCCeEe---------------------
Q 005956 300 SPLQELHGHK------------GDVLDLAWSNSN---YLLSCSMDKTVRMWQVGCNQCL--------------------- 343 (667)
Q Consensus 300 ~~~~~l~gh~------------~~V~~l~~s~~~---~l~s~s~Dg~I~iWd~~~~~~~--------------------- 343 (667)
+....+.+|. ..|.+++|+|++ .|++++.|++|++||+.++...
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 2356778898 889999999985 8999999999999999765432
Q ss_pred ------------------EEe--eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEEE--------ecccCCce
Q 005956 344 ------------------NVF--DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD--------WADVRDVI 394 (667)
Q Consensus 344 ------------------~~~--~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~--------~~~~~~~v 394 (667)
..+ .|...|++++|+| ++++|++| .|+.|++||+.. ++... ...|...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 229 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVI 229 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCE
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcce
Confidence 122 4899999999999 99999998 799999999994 44443 45788899
Q ss_pred EEEEEeeCC-CEEEEEecCCcEEEEEecCCcceee-eEeecccc--------CcCCCCeEEEEEccCCCeEEEEEeCCCc
Q 005956 395 SAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRK--------KTSGNKITGIQFSRDESQRIMITSEDSK 464 (667)
Q Consensus 395 ~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~--------~~~~~~I~~l~~sp~g~~~l~~~s~dg~ 464 (667)
++++|+|++ +.|++|+.||.|++||+++...... ...+..+. ..+...|++++|+|+| .+|++++. +.
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~ 307 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LS 307 (447)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SE
T ss_pred EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-Ce
Confidence 999999998 9999999999999999998765211 11112111 0112389999999996 78888888 99
Q ss_pred EEEEECCc---ceeeEEeCCCCC-------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-------
Q 005956 465 LRILDGVD---VIHKFKGLPKSG-------------SQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK------- 521 (667)
Q Consensus 465 I~iwd~~~---~~~~~~~~~~~~-------------~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~------- 521 (667)
|++||+.. ....+..+.... .+..++|+|++++|++|+.||.|+|||+.+++.....
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~ 387 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccc
Confidence 99999864 445555431111 1334999999999999999999999999987653211
Q ss_pred --------------------------cccCccceeEEccCCcEEEEecCC
Q 005956 522 --------------------------QKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 522 --------------------------~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
.....+..++|+|++.+||++...
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 388 PRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp TTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred cccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence 111223457889999888887554
No 49
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.6e-31 Score=282.83 Aligned_cols=252 Identities=17% Similarity=0.269 Sum_probs=207.3
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+..|.++|++++|+|++++||+|+.||.|+|||+.+...
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------------------------- 42 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------------------------- 42 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE----------------------------------------
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE----------------------------------------
Confidence 3456999999999999999999999999999999985210
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
..+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++|+| ++++|++++.|+
T Consensus 43 ---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 118 (372)
T 1k8k_C 43 ---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSR 118 (372)
T ss_dssp ---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCC
Confidence 1467788999999999999999 9999999999999999988765543 4888999999999 999999999999
Q ss_pred eEEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-----------eEeecccc
Q 005956 373 KVRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-----------KVDFHDRK 436 (667)
Q Consensus 373 ~v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-----------~~~~~~~~ 436 (667)
.|++||+..+. ... ...|...|.+++|+|++++|++++.||.|++||++....... ........
T Consensus 119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 99999998876 222 356788999999999999999999999999999753211000 00000012
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
..|...|++++|+|++ .+|++++.|+.|++||+...........|...+.+++|+|++++|++| .|+.|++|++.+
T Consensus 199 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 2456789999999996 799999999999999987544443444478899999999999988888 899999999987
No 50
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=281.85 Aligned_cols=282 Identities=19% Similarity=0.295 Sum_probs=227.3
Q ss_pred cccceeeccccccEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCcee
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPD---GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspd---g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (667)
....+.+++|.+.|++|+|+|+ |++||+|+.||.|+|||+.+..
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--------------------------------- 75 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--------------------------------- 75 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------------------------------
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------------------------------
Confidence 3445678899999999999999 6999999999999999998511
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEE--eeCCCCEE
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQF--NPIDDNYF 365 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f--~p~d~~~l 365 (667)
......+.+|...|.+++|+|++ +|++++.|++|++||+.+++++....|...|++++| +| ++++|
T Consensus 76 ----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l 144 (368)
T 3mmy_A 76 ----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCV 144 (368)
T ss_dssp ----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEE
T ss_pred ----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEE
Confidence 11236678899999999999999 999999999999999999999998899999999999 77 88899
Q ss_pred EEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
++++.|+.|++||+++++.+........+.++.+. +..+++++.++.+.+|+++.......... ......+.+
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~ 217 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIE-----SPLKHQHRC 217 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-----CSCSSCEEE
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcc-----ccccCCCce
Confidence 99999999999999998877666666666666655 46899999999999999987655433221 112345566
Q ss_pred EEEccCC---CeEEEEEeCCCcEEEEECCcc-----eeeEEeCCCCC------------CeEEEEEcCCCCEEEEEeCCC
Q 005956 446 IQFSRDE---SQRIMITSEDSKLRILDGVDV-----IHKFKGLPKSG------------SQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 446 l~~sp~g---~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~------------~v~~v~~spdg~~l~sgs~Dg 505 (667)
+.+.++. ...+++++.|+.|++||+... ...+.. |.. .|.+++|+|++++|++++.||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 218 VAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred EEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 6665542 123999999999999998743 334443 333 799999999999999999999
Q ss_pred cEEEEEcCCCCccccc-cccCccceeEEccCCcEEEEecCCC
Q 005956 506 RVYVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.|+|||+.+++..... .....+..+.|+|+|.+||++...+
T Consensus 296 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 296 RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 9999999988764443 3355677789999999999987654
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=282.08 Aligned_cols=285 Identities=11% Similarity=0.177 Sum_probs=220.3
Q ss_pred ceeeccccccEEEEEEcCCCCEE-EEEEC---CCcEEEEEcCCCce------------eeeeeCCC---C-CccccCCCC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGE---DGVVRIWHVTSVAA------------SCKSFTDD---G-GFGSNAKEG 274 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~---Dg~I~vWdv~~~~~------------~~~~~~~~---~-~~~~~~~~~ 274 (667)
.+.+++|.+.|++++|+|++..| ++|+. ||.|+|||+.++.. .++.|.++ + .++....++
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34567899999999999999655 55655 99999999987543 33444554 2 233344455
Q ss_pred eEEecccCCCCceeecCCCcccccCCcceeeeccccceEEEE------ecCCC-eEEEEeCCCcEEEEecCCCe-EeEEe
Q 005956 275 KIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLA------WSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVF 346 (667)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~------~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~ 346 (667)
.+.+++.... ..++..+.+|...|.++. |+|++ +|++++.|++|++||+.+++ .+..+
T Consensus 91 ~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 91 NLHIWNLEAP--------------EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp CEEEECTTSC--------------SSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred eEEEEeCCCC--------------CccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 5555544321 125778889999999995 56778 99999999999999999886 66666
Q ss_pred e-C----CCcEEEEE----EeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEee---CCCEEEEEecCCc
Q 005956 347 D-H----HNYVTCVQ----FNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP---DGKGFIVGSITGT 414 (667)
Q Consensus 347 ~-h----~~~V~~l~----f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp---dg~~l~~gs~dg~ 414 (667)
. | ...|++++ |+| ++++|++++.|+.|++||+++++......+...|.+++|+| +++.+++|+.||.
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred cccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 4 3 33899998 677 99999999999999999999999888888899999999999 9999999999999
Q ss_pred EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-------------------ee
Q 005956 415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------------------IH 475 (667)
Q Consensus 415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-------------------~~ 475 (667)
|++||+++...... +... ....|...|++++|+|++..++++++.||.|++||+... ..
T Consensus 236 i~i~d~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (357)
T 3i2n_A 236 FHVFDMRTQHPTKG-FASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL 313 (357)
T ss_dssp EEEEEEEEEETTTE-EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred EEEEeCcCCCcccc-eeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence 99999987654332 1110 112356899999999997448999999999999997521 12
Q ss_pred eEEeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCC
Q 005956 476 KFKGLPKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDELC 516 (667)
Q Consensus 476 ~~~~~~~~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~~~~ 516 (667)
......|...|.+++|+|++++|+ +++.||.|+|||+.+..
T Consensus 314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 223334889999999999999998 89999999999998764
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-31 Score=286.40 Aligned_cols=275 Identities=13% Similarity=0.175 Sum_probs=220.7
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+.+|.+.|++++|+| ++||+|+.||.|+||++.+....
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~------------------------------------ 49 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE------------------------------------ 49 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC------------------------------------
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc------------------------------------
Confidence 4567889999999999999 79999999999999999863210
Q ss_pred cccccCCcceeeeccccceEEEEecCC----C----eEEEEeCCCcEEEEecCCCeE-----eEEee-C-----CCcEEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNS----N----YLLSCSMDKTVRMWQVGCNQC-----LNVFD-H-----HNYVTC 354 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~----~----~l~s~s~Dg~I~iWd~~~~~~-----~~~~~-h-----~~~V~~ 354 (667)
.....+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..+. | ...|.+
T Consensus 50 ---~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 126 (397)
T 1sq9_A 50 ---NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 126 (397)
T ss_dssp ---CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE
T ss_pred ---cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE
Confidence 011346778899999999999998 5 888999999999999998875 56654 6 489999
Q ss_pred EEEe----eCCCCE-EEEEecCCeEEEEecCC------CeEE------Ee-------cccCCceEEEEEeeCCCEEEEEe
Q 005956 355 VQFN----PIDDNY-FISGSIDGKVRIWGVCE------KRVV------DW-------ADVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 355 l~f~----p~d~~~-l~sgs~Dg~v~iwdl~~------~~~~------~~-------~~~~~~v~~v~~spdg~~l~~gs 410 (667)
++|+ | ++++ |++++.|+.|++||+.+ ++.+ .+ ..+...|.+++|+|++ .+++++
T Consensus 127 ~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~ 204 (397)
T 1sq9_A 127 LKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF 204 (397)
T ss_dssp EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred EEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence 9999 8 8999 99999999999999988 4432 33 3467889999999999 999999
Q ss_pred cCCcEEEEEecCCcceeeeEeeccccCcC---CCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcceeeEEeCC---
Q 005956 411 ITGTCHFYKASGNDLKLEKVDFHDRKKTS---GNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLP--- 481 (667)
Q Consensus 411 ~dg~i~l~d~~~~~~~~~~~~~~~~~~~~---~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~--- 481 (667)
.+|.|++||+++.+.... +.. ...| ...|++++|+|++ .+|++++.| +.|++||+...........
T Consensus 205 ~dg~i~i~d~~~~~~~~~-~~~---~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLYN-FES---QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp TTSEEEEEETTTTEEEEE-EEC---CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred CCCcEEEEECCCCceeEE-Eec---cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 999999999987654332 221 0113 5789999999995 899999999 9999999876544444444
Q ss_pred ----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-------c---------------cCccce
Q 005956 482 ----------KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-------K---------------NSVRSC 529 (667)
Q Consensus 482 ----------~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-------~---------------~~~~~~ 529 (667)
|...|.+++|+|++++|++++.||.|+|||+.+++...... . ...+..
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~ 359 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 359 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeE
Confidence 78899999999999999999999999999999886543332 2 455667
Q ss_pred eEEccCC
Q 005956 530 EHFFSEG 536 (667)
Q Consensus 530 ~~fs~dg 536 (667)
+.|+|+|
T Consensus 360 ~~~~~~g 366 (397)
T 1sq9_A 360 VKFLKKG 366 (397)
T ss_dssp EEEECTT
T ss_pred EEecccc
Confidence 7899988
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-32 Score=291.50 Aligned_cols=252 Identities=10% Similarity=0.182 Sum_probs=209.5
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|.+.|++++|+|++++||+|+.||.|+||++.+... ..
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------------------------~~ 103 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------------------------AI 103 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------------------------CC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------------------------cc
Confidence 5899999999999999999999999999999975210 01
Q ss_pred CcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCe------EeEEe----eCCCcEEEEEEeeCCCCEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQ------CLNVF----DHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~------~~~~~----~h~~~V~~l~f~p~d~~~l~s 367 (667)
..+..+.+|...|.+++|+|+ + +|++++.|++|++||+.+++ ....+ .|...|.+++|+|..+.+|++
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence 346777899999999999998 5 99999999999999999876 33332 488899999999933899999
Q ss_pred EecCCeEEEEecCCCeEEEecc-c------CCceEEEEEeeCC-CEEEEEecCC---cEEEEEecCCcceeeeEeecccc
Q 005956 368 GSIDGKVRIWGVCEKRVVDWAD-V------RDVISAICYIPDG-KGFIVGSITG---TCHFYKASGNDLKLEKVDFHDRK 436 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~-~------~~~v~~v~~spdg-~~l~~gs~dg---~i~l~d~~~~~~~~~~~~~~~~~ 436 (667)
++.|+.|++||+.+++.+.... + ...|.+++|+|++ .++++++.++ .|++||+++.......+.
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~----- 258 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN----- 258 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----
T ss_pred EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----
Confidence 9999999999999988765333 3 6789999999997 6899999998 999999997643322111
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG-KHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~Dg~I~iWd~~~~ 515 (667)
..|...|++++|+|+++.+|++++.|+.|++||+.+.........|...|.+++|+|++ .+|++++.|+.|+||++.+.
T Consensus 259 ~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 13458899999999335899999999999999988654444444588899999999999 89999999999999999887
Q ss_pred Cc
Q 005956 516 CF 517 (667)
Q Consensus 516 ~~ 517 (667)
..
T Consensus 339 ~~ 340 (416)
T 2pm9_A 339 TN 340 (416)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1e-31 Score=289.86 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=217.3
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+.+..| ..+....|+|++++||+|+.||.|+|||+.+.
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 129 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----------------------------------------- 129 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC-----------------------------------------
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----------------------------------------
Confidence 344455 45566688999999999999999999998752
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
.....+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|++
T Consensus 130 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~ 204 (420)
T 3vl1_A 130 ----LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGT 204 (420)
T ss_dssp ----EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred ----ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCc
Confidence 3345567899999999999999 99999999999999999999888876 999999999999 9999999999999
Q ss_pred EEEEecCCCeEEEecc----cCCceEE---------------------EEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 374 VRIWGVCEKRVVDWAD----VRDVISA---------------------ICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~----~~~~v~~---------------------v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
|++||+++++.+.... +...+.+ ++|+|+|++|++|+.||.|++||+++......
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 9999999988765332 3334444 45578899999999999999999988765433
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
. ...+...|++++|+|++..+|++++.||.|++||+... ...+..+ +...+.++.+ +++++|++++.|+
T Consensus 285 ~------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~ 356 (420)
T 3vl1_A 285 L------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSGFDT 356 (420)
T ss_dssp E------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEETTTE
T ss_pred c------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEecCCc
Confidence 2 12345789999999997559999999999999998753 4455553 5677777755 5788999999999
Q ss_pred cEEEEEcCCCCccc----------cccccCccceeEEccCCc----EEEEec
Q 005956 506 RVYVWNYDELCFPS----------SKQKNSVRSCEHFFSEGV----SVAVQW 543 (667)
Q Consensus 506 ~I~iWd~~~~~~~~----------~~~~~~~~~~~~fs~dg~----~lav~w 543 (667)
.|++|++.....+. ..........++|+|++. ++|++.
T Consensus 357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 357 SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 99999998743221 122334456678999888 566543
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.4e-31 Score=280.84 Aligned_cols=203 Identities=10% Similarity=0.028 Sum_probs=166.7
Q ss_pred ccccceEEEEecCCC-eEE--EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956 307 GHKGDVLDLAWSNSN-YLL--SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~--s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~ 383 (667)
.+...+.+++|+||| +|+ +++.|++|+|||+.+++++..+.|...|.+++|+| +++++++++.+ .+++|+..+++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 455678999999999 655 44579999999999999999999999999999999 99999999855 46666666655
Q ss_pred EE-E--ecccCCceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 384 VV-D--WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 384 ~~-~--~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
.. . ...+...|.+++|+|+|+.+++++.++ .+++|++........ ...+ ..+...|++++|+|+| ++
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~V~~~~~Spdg-~~ 283 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV----TNRFKGITSMDVDMKG-EL 283 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE----ESSCSCEEEEEECTTS-CE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee----cCCCCCeEeEEECCCC-Cc
Confidence 43 2 345777899999999999999999887 688899887654433 2222 2345789999999996 89
Q ss_pred EEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 456 IMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
|++++.|+.|+|||+.+....... ..|...|++++|+|||++||+||.|++|+||++....
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 999999999999999876554443 4589999999999999999999999999999997543
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-30 Score=268.16 Aligned_cols=271 Identities=15% Similarity=0.189 Sum_probs=221.1
Q ss_pred ccccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 211 ALYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 211 ~~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
...+.+++.+|.+.|++++| |++++||+|+.||.|+|||+.+.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~------------------------------------ 49 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ------------------------------------ 49 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS------------------------------------
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC------------------------------------
Confidence 44567789999999999999 99999999999999999999752
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEe-eCCCcEEEEEEeeCCCCEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVF-DHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~-~h~~~V~~l~f~p~d~~~l 365 (667)
.....+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+ .|...|.++.| +++++
T Consensus 50 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l 117 (313)
T 3odt_A 50 ---------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDGVV 117 (313)
T ss_dssp ---------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE---ETTEE
T ss_pred ---------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe---cCCEE
Confidence 3356677899999999999999 9999999999999998754 444444 48999999999 46799
Q ss_pred EEEecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 366 ISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
++++.|+.|++|| ..........+...+.+++|.| +++.+++++.||.|++||.. ... ..+ ...+...|.
T Consensus 118 ~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~-~~~-----~~~~~~~i~ 188 (313)
T 3odt_A 118 ISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVI-KTF-----SGIHNDVVR 188 (313)
T ss_dssp EEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEE-EEE-----CSSCSSCEE
T ss_pred EEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceE-EEE-----eccCcccEE
Confidence 9999999999999 3334445677899999999999 99999999999999999932 111 111 112458899
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QK 523 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~ 523 (667)
+++|+|++ . +++++.|+.|++||+...........|...|.+++|+|++ .|++++.||.|++||+.+++..... ..
T Consensus 189 ~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 189 HLAVVDDG-H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP 265 (313)
T ss_dssp EEEEEETT-E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred EEEEcCCC-e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence 99999996 4 9999999999999988554444444588999999999999 6889999999999999988764443 33
Q ss_pred cCccceeEEccCCcEEEEe
Q 005956 524 NSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 524 ~~~~~~~~fs~dg~~lav~ 542 (667)
......+.|+|++.+++.+
T Consensus 266 ~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 266 AISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp SSCEEEEEECTTSCEEEEE
T ss_pred CceEEEEEEccCCCEEEEe
Confidence 4456678999999866543
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-30 Score=285.31 Aligned_cols=272 Identities=18% Similarity=0.338 Sum_probs=229.5
Q ss_pred ccceeeccccccE-EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 213 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 213 ~~~~~l~~H~~~I-~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
...+.+.+|.+.| .++.| ++++|++|+.||+|++||+.+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~-------------------------------------- 151 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-------------------------------------- 151 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT--------------------------------------
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC--------------------------------------
Confidence 3456889999885 66666 567999999999999999986
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee-CCCCEEEEEe
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP-IDDNYFISGS 369 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p-~d~~~l~sgs 369 (667)
.+.+..+.+|.+.|.+++|++++.|++|+.||+|++||+.+++++..+. |...|.+++|++ .+++++++|+
T Consensus 152 -------~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 152 -------KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp -------TEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred -------CcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc
Confidence 2446778899999999999999999999999999999999999998886 999999999995 2678999999
Q ss_pred cCCeEEEEecCCCeE------------------------EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc
Q 005956 370 IDGKVRIWGVCEKRV------------------------VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~------------------------~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
.|++|++||+.++.. .....|...+.++ +++++++++|+.||.|++||+++.+.
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999987652 2345566667665 68899999999999999999987655
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
... ...|...|++++|+|++ .++++++.|+.|++||+.+.........|...|.+++|+ +++|++++.||
T Consensus 303 ~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 303 LYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp EEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred EEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 332 12345889999999996 799999999999999998665555555689999999997 58999999999
Q ss_pred cEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 506 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
.|++||+.++......+.........|++++.+++++.
T Consensus 373 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence 99999999987666666666777789999999999876
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.3e-31 Score=278.42 Aligned_cols=276 Identities=13% Similarity=0.090 Sum_probs=223.4
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
...+|.+.|++++|+|++++|++|+.||.|+||++.+...
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~---------------------------------------- 45 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK---------------------------------------- 45 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------------------------------------
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------------------------------------
Confidence 3468999999999999999999999999999999986321
Q ss_pred ccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEec-CCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQV-GCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~-~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
..+...+.+|...|.+++|+|++ +|++++.|+.|++||+ .+++...... |...|.+++|+| +++|++++.|
T Consensus 46 --~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d 121 (342)
T 1yfq_A 46 --NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWD 121 (342)
T ss_dssp --EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETT
T ss_pred --cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCC
Confidence 01234556899999999999877 5899999999999999 8888766667 999999999998 8899999999
Q ss_pred CeEEEEecCC---------CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccccCcCCC
Q 005956 372 GKVRIWGVCE---------KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 372 g~v~iwdl~~---------~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~~ 441 (667)
+.|++||+++ ++.+....+...|.+++|+|++ +++++.+|.|++||+++ ......... ..+..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~ 194 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKY 194 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSS
T ss_pred CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeee-----cCCCC
Confidence 9999999987 6666655688999999999987 99999999999999987 543322221 22347
Q ss_pred CeEEEEEcc-CCCeEEEEEeCCCcEEEEECCc--------ceeeEEeCC-------CCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 442 KITGIQFSR-DESQRIMITSEDSKLRILDGVD--------VIHKFKGLP-------KSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 442 ~I~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~--------~~~~~~~~~-------~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
.|.+++|+| ++ .++++++.||.|++|+... ....+..+. |...|.+++|+|++++|++++.||
T Consensus 195 ~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 273 (342)
T 1yfq_A 195 QIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG 273 (342)
T ss_dssp CEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred ceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence 899999999 85 8999999999999999753 344454431 234999999999999999999999
Q ss_pred cEEEEEcCCCCcccccc-c-cCccceeEEccCCcEEEEecCCC
Q 005956 506 RVYVWNYDELCFPSSKQ-K-NSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~~-~-~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.|++||+.+++...... . ...+..+. |+|.+|+++..+.
T Consensus 274 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 274 IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 99999999887644332 2 34444445 9999888865543
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-32 Score=299.83 Aligned_cols=203 Identities=12% Similarity=0.123 Sum_probs=165.8
Q ss_pred eeeeccccceEEEEecCC------C-eEEEEeCCCcEEEEecCCCeE-----------eEEe-eCCCcEEEEEEeeCCCC
Q 005956 303 QELHGHKGDVLDLAWSNS------N-YLLSCSMDKTVRMWQVGCNQC-----------LNVF-DHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~------~-~l~s~s~Dg~I~iWd~~~~~~-----------~~~~-~h~~~V~~l~f~p~d~~ 363 (667)
..+.+|.+.|.+++|+|+ + +|++++.||+|+|||+.++.+ ...+ .|...|++++|++ + .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence 346678899999999986 3 899999999999999987642 1233 4889999999998 4 5
Q ss_pred EEEEEecCCeEEEEecCCCe-E-EEecccCCceEEE--EEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 364 YFISGSIDGKVRIWGVCEKR-V-VDWADVRDVISAI--CYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~-~-~~~~~~~~~v~~v--~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
.|++|+.||+|++||+.++. . ..+..|...|+++ +|+|+| ++|++|+.||+|+|||+++.+.... +..+.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~-~~~~~---- 353 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT-TVSRF---- 353 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE-EEEEC----
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc-ccccc----
Confidence 89999999999999998764 2 3467789999999 578888 8999999999999999987655332 11111
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
....|.+++|+|++ ..+++++.|++|++||++... ..+.+ |...|.+++|+|+|++|++|+.||+|+|||+...
T Consensus 354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 11357899999986 679999999999999987543 44555 8999999999999999999999999999998764
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-30 Score=268.85 Aligned_cols=239 Identities=21% Similarity=0.354 Sum_probs=212.1
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+|.+.|++++|+|++++|++++.||.|++||+.+...
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------------------------------------------- 131 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP------------------------------------------- 131 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------------------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-------------------------------------------
Confidence 7999999999999999999999999999999986321
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
.....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEE
Confidence 1345677899999999999998 99999999999999999999988886 889999999999 99999999999999999
Q ss_pred ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
|+++++......+...+.+++|+|+++.+++++.+|.|++||+.+.... . ...+...|++++|+|++ .+|+
T Consensus 211 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~----~~~~~~~v~~~~~~~~~-~~l~ 281 (337)
T 1gxr_A 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----Q----LHLHESCVLSLKFAYCG-KWFV 281 (337)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----E----ECCCSSCEEEEEECTTS-SEEE
T ss_pred ECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----E----EcCCccceeEEEECCCC-CEEE
Confidence 9999998887788899999999999999999999999999999876542 1 22345789999999996 7999
Q ss_pred EEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 458 ITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
+++.|+.|++||+......... .+...+.+++|+|++++|++++.||.|++|++
T Consensus 282 ~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999998865444433 37889999999999999999999999999996
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-31 Score=280.14 Aligned_cols=284 Identities=13% Similarity=0.164 Sum_probs=224.0
Q ss_pred eeccccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 217 EIQAHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+|.+.|++++|+|+ ..++++++.++.|+||++.+.....
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---------------------------------- 58 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---------------------------------- 58 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE----------------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE----------------------------------
Confidence 34589999999999984 4566666777799999998632210
Q ss_pred CcccccCCcceee--eccccceEEEEecCC----C-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCE
Q 005956 293 EVFQIEESPLQEL--HGHKGDVLDLAWSNS----N-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 293 ~~~~~~~~~~~~l--~gh~~~V~~l~~s~~----~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~ 364 (667)
.+..+ ..|...|.+++|+|+ + +|++++.|++|++||+.+++.+..+. |...|++++|+|.++++
T Consensus 59 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 59 --------LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp --------EEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE
T ss_pred --------eeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE
Confidence 01111 136788999999998 6 89999999999999999999988886 99999999999977899
Q ss_pred EEEEecCCeEEEEecCCCeEEEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEe---------
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVD--------- 431 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~--------- 431 (667)
|++++.|+.|++||+.+++.... ..+...|.+++|+|++++|++++.||.|++||+++.........
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 99999999999999999887764 47889999999999999999999999999999987543321000
Q ss_pred ------------eccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee--------------eEEeCCCCCC
Q 005956 432 ------------FHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH--------------KFKGLPKSGS 485 (667)
Q Consensus 432 ------------~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~--------------~~~~~~~~~~ 485 (667)
.......+...|++++|++ .++++++.|+.|++||+..... ......|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred cccccceeeccCccccccCCcceEEEEEEcC---CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 0001122568899999992 5999999999999999764311 2223347788
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCccc-----cccc--cCccceeEEccCCcEEEEecCC
Q 005956 486 QMSASFTTT--GKHIISIGDDCRVYVWNYDELCFPS-----SKQK--NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 486 v~~v~~spd--g~~l~sgs~Dg~I~iWd~~~~~~~~-----~~~~--~~~~~~~~fs~dg~~lav~w~~ 545 (667)
|.+++|+|+ +++|++|+.||.|++||+.+++... .... ...+..+.|+|++.+|+++..+
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 999999999 9999999999999999999876432 1122 4567778999999999886543
No 62
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.8e-31 Score=275.90 Aligned_cols=280 Identities=12% Similarity=0.171 Sum_probs=222.1
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+...++.+|.+.|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999 99999999999999999999888876 888999999999 99999999999999999
Q ss_pred ecCCCe-----EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 378 GVCEKR-----VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 378 dl~~~~-----~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|+.+.. ......|...|.++.|++++. +++++.|+.|++||+.++..... ...|...|++++|+|++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~-------~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT-------FTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE-------ECCCSSCEEEEEECTTS
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE-------EcCCCCceEEEEECCCC
Confidence 998753 234667889999999999875 88999999999999987765322 22345789999999986
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-c--cCccce
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-K--NSVRSC 529 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~--~~~~~~ 529 (667)
.++++++.|+.|++||+...........|...|.+++|+|++++|++|+.||.|+|||+.++....... . ...+.+
T Consensus 197 -~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 197 -RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp -SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred -CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 899999999999999988655444445588999999999999999999999999999998876543322 1 234667
Q ss_pred eEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956 530 EHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS 595 (667)
Q Consensus 530 ~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~ 595 (667)
+.|+|+|.+++++..... ++++....... -..+..+...+....|++++.+++.|+..+.
T Consensus 276 ~~~s~~g~~l~~g~~d~~--i~vwd~~~~~~----~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFN--CNVWDALKADR----AGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp EEECTTSSEEEEEETTSE--EEEEETTTCCE----EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred EEECCCCCEEEEECCCCe--EEEEEcccCcE----eeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 899999999999765432 22222111000 0112233344566789999999988776665
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.2e-30 Score=275.89 Aligned_cols=273 Identities=18% Similarity=0.285 Sum_probs=214.6
Q ss_pred cccceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 212 LYTSQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
....+.+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+..........
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--------------------------- 85 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK--------------------------- 85 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------------------
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------------------
Confidence 344566788999999999999 9999999999999999999864321110000
Q ss_pred CCCcccccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC--CCCEEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI--DDNYFI 366 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--d~~~l~ 366 (667)
. ..........+|...|.+++|+| ++ +|++++.|+.|++||+.+++.+..+.+...+.++.|.|. ++.+++
T Consensus 86 --~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 86 --A---VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp --E---EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred --c---cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence 0 00000111246999999999999 55 999999999999999999999999999999999999983 234999
Q ss_pred EEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEee---------ccc
Q 005956 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDF---------HDR 435 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~---------~~~ 435 (667)
+++.|+.|++||+.+++.+. +..|...|.+++|+|+++ .+++|+.||.|++||++........+.. ...
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 99999999999999887654 566889999999999998 5889999999999999876543332211 111
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-----------------------------------------
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----------------------------------------- 474 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----------------------------------------- 474 (667)
...+...|++++|+|++ .+|++++.|+.|++||+....
T Consensus 241 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 319 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319 (408)
T ss_dssp SCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred cccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence 13467889999999995 899999999999999975321
Q ss_pred ------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 475 ------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 475 ------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.......|...|.+++|+|++++|++++.||.|++||+.+.+.
T Consensus 320 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 320 TVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 1112234788999999999999999999999999999998764
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-31 Score=288.77 Aligned_cols=273 Identities=13% Similarity=0.119 Sum_probs=214.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..+++++|+|+|++|++|+.||.|++||+.+.. ..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~---------------------------------------------~~ 91 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD---------------------------------------------GS 91 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEE---------------------------------------------TT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccc---------------------------------------------ee
Confidence 445689999999999999999999999987521 12
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
..+..| ..+....|++++ +|++++.|+.|++||+.++++...+ .|...|++++|+| ++++|++|+.|++|++||+.
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 92 KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 233344 344555788888 9999999999999999999998887 5999999999999 99999999999999999999
Q ss_pred CCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc-cc-----------------CcCCC
Q 005956 381 EKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-RK-----------------KTSGN 441 (667)
Q Consensus 381 ~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-~~-----------------~~~~~ 441 (667)
+++.+ .+..|...|.+++|+|++++|++++.||.|++||+++.+.... +..+. +. ..+..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccC
Confidence 87755 4667899999999999999999999999999999987765432 11110 00 00124
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-CCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCccc
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-LPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.+++++|+|++ .+|++++.||.|++||+......... ..|...+.+++|+|+++ +|++|+.||.|++||+.++..+.
T Consensus 249 ~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 327 (420)
T 3vl1_A 249 KKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV 327 (420)
T ss_dssp CCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred cccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence 45555567875 89999999999999998865444433 23678999999999999 99999999999999999875422
Q ss_pred ---cccccCccceeEEccCCcEEEEecCC
Q 005956 520 ---SKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 520 ---~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
..+......++ +++++.+++++..+
T Consensus 328 ~~~~~~~~~~v~~~-~~~~~~~l~s~~~d 355 (420)
T 3vl1_A 328 GEFLINEGTPINNV-YFAAGALFVSSGFD 355 (420)
T ss_dssp EEEEESTTSCEEEE-EEETTEEEEEETTT
T ss_pred hhhhccCCCCceEE-EeCCCCEEEEecCC
Confidence 22344555565 55678888776443
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2e-30 Score=299.42 Aligned_cols=244 Identities=22% Similarity=0.398 Sum_probs=201.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+.+|.+.|++++|+|+|++|+||+.||+|+|||+.++
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---------------------------------------- 462 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---------------------------------------- 462 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----------------------------------------
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----------------------------------------
Confidence 4568899999999999999999999999999999999862
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCC--CEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDD--NYFIS 367 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~--~~l~s 367 (667)
..+..+.+|...|.+++|+|++ +|++++.|++|+|||+......... .|...|.+++|+| ++ ..|++
T Consensus 463 -----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s 536 (694)
T 3dm0_A 463 -----VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVS 536 (694)
T ss_dssp -----EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEE
T ss_pred -----cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEE
Confidence 3456788999999999999999 9999999999999998765544443 3888999999999 54 68999
Q ss_pred EecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|+.|++|++||+.++++.. +..|...|++++|+|+|++|++|+.||.|++||+.+.+.... +. +...|.++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~---~~-----~~~~v~~~ 608 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS---LE-----ANSVIHAL 608 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---CB-----CSSCEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---ec-----CCCcEEEE
Confidence 9999999999999988764 667899999999999999999999999999999988765322 11 23679999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCccee--eEEeC-----------------CCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL-----------------PKSGSQMSASFTTTGKHIISIGDDCRV 507 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~-----------------~~~~~v~~v~~spdg~~l~sgs~Dg~I 507 (667)
+|+|++ .++++ +.++.|+|||+..... .+... .+...+++++|+|+|++|++|+.||.|
T Consensus 609 ~~sp~~-~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 609 CFSPNR-YWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EECSSS-SEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEcCCC-cEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 999985 55544 5567799999875432 22211 112247899999999999999999999
Q ss_pred EEEEcCC
Q 005956 508 YVWNYDE 514 (667)
Q Consensus 508 ~iWd~~~ 514 (667)
+||++..
T Consensus 687 ~iW~i~~ 693 (694)
T 3dm0_A 687 RVWGIGR 693 (694)
T ss_dssp EEEEC--
T ss_pred EEEeccC
Confidence 9999853
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=6.7e-31 Score=276.86 Aligned_cols=246 Identities=19% Similarity=0.338 Sum_probs=205.2
Q ss_pred cccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 220 AHKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 220 ~H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.|.+.|++++|+|+ |++|++|+.||.|+|||+.+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------------------------------------ 104 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------------------------------------------ 104 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------------------------------------------
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------------------------------------------
Confidence 47789999999999 77999999999999999985
Q ss_pred cccCCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCCCEEEEEe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.+.+..+.+|...|.+++|+| ++ +|++++.|++|++||+.+++.+..+ .|...|.+++|+| ++++|++++
T Consensus 105 ---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 180 (366)
T 3k26_A 105 ---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCG 180 (366)
T ss_dssp ---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEE
T ss_pred ---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEec
Confidence 244677889999999999999 77 9999999999999999999999887 4899999999999 999999999
Q ss_pred cCCeEEEEecCCCeEEEe-----------------------------cccCCceEEEEEeeCCCEEEEEecCCcEEEEEe
Q 005956 370 IDGKVRIWGVCEKRVVDW-----------------------------ADVRDVISAICYIPDGKGFIVGSITGTCHFYKA 420 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~-----------------------------~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~ 420 (667)
.|+.|++||+.+++.... ..+...|.+++|+ ++++++++.||.|++||+
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~ 258 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP 258 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence 999999999988654321 1278889999998 789999999999999999
Q ss_pred cCCcceeeeE-------eeccccCcCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCcc------eeeEEeCCCCCC
Q 005956 421 SGNDLKLEKV-------DFHDRKKTSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDV------IHKFKGLPKSGS 485 (667)
Q Consensus 421 ~~~~~~~~~~-------~~~~~~~~~~~~I~~l~~sp~--g~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~ 485 (667)
.+........ ........+...|++++|+|+ + .+|++++.||.|++||+... ...+..+.+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 337 (366)
T 3k26_A 259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAA 337 (366)
T ss_dssp SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSC
T ss_pred CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccceEEcccccCCc
Confidence 8765421100 011112234578999999998 6 89999999999999998742 224555444799
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 486 QMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
|.+++|+|++++|++++.||.|+|||+.+
T Consensus 338 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 338 IRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999999999999999853
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7e-31 Score=285.38 Aligned_cols=259 Identities=15% Similarity=0.214 Sum_probs=202.8
Q ss_pred ccceee-ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 213 YTSQEI-QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 213 ~~~~~l-~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+.+.+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+.....
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-------------------------------- 100 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-------------------------------- 100 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--------------------------------
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--------------------------------
Confidence 345566 89999999999999 99999999999999999987410000
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC---CCeEeEEee-------------CCCcEE
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG---CNQCLNVFD-------------HHNYVT 353 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~---~~~~~~~~~-------------h~~~V~ 353 (667)
.......+ +|...|.+++|+|++ +|++++.|++|++||+. +++.+..+. +...+.
T Consensus 101 -------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 101 -------VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp -------CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred -------ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 01122333 599999999999988 99999999999999995 454443322 556777
Q ss_pred EEE--EeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 354 CVQ--FNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 354 ~l~--f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
++. +++ ++.+|++|+.|+.|++||+++++.+. +.. |...|++++|+|++++|++|+.||.|++||++.......
T Consensus 173 ~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 173 RMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp EEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 777 456 78999999999999999999988765 334 788999999999999999999999999999997554322
Q ss_pred eEeeccccCcCCCCeEEEEEccC---CCeEEEEEeCCCcEEEEECCcc--eeeEEeC-----------------------
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSEDSKLRILDGVDV--IHKFKGL----------------------- 480 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~----------------------- 480 (667)
+.+ .+...|++++|+|. ++.+|++++.|+.|++||+.+. ...+.++
T Consensus 252 -~~~-----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 252 -WSF-----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp -EBC-----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred -Eec-----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 211 23468999977653 2379999999999999998743 3333322
Q ss_pred -CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 481 -PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 481 -~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
.|...|.+++|+ ++++|++|+.|+.|++||+.+++...
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 155668999999 78999999999999999999887543
No 68
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=7.6e-31 Score=305.52 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=210.6
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.+.+|.+.|++++|+|+|++|++|+.||.|+|||+....
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--------------------------------------- 42 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------- 42 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------------------------
Confidence 45788999999999999999999999999999999987421
Q ss_pred ccccCCcceeeeccccceEEEEecCC--C-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEeeCC--CCEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNS--N-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNPID--DNYFI 366 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~--~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p~d--~~~l~ 366 (667)
...+..+.+|.+.|++++|+++ + +|++|+.||+|++||+.+++ .+..+ .|...|++++|+| + +++++
T Consensus 43 ----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~ 117 (753)
T 3jro_A 43 ----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLL 117 (753)
T ss_dssp ----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEE
T ss_pred ----CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEE
Confidence 2346678899999999999987 6 99999999999999999986 44444 4899999999999 7 89999
Q ss_pred EEecCCeEEEEecCCCe---EEEecccCCceEEEEEee-------------CCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956 367 SGSIDGKVRIWGVCEKR---VVDWADVRDVISAICYIP-------------DGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~---~~~~~~~~~~v~~v~~sp-------------dg~~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
+|+.||.|++||+.++. ......+...|.+++|+| +++.+++|+.||.|++||+++........
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred EEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 99999999999998873 345667889999999999 58999999999999999999875433211
Q ss_pred eeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEEEEECCcce-----eeEEeCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 431 DFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLRILDGVDVI-----HKFKGLPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
. ....|...|++++|+|++ +.++++++.||.|++||+.... .......|...|.+++|+|+|++|++|+.
T Consensus 198 ~---~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 198 S---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp E---EECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred e---eecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 1 123456899999999994 4899999999999999977532 22233447888999999999999999999
Q ss_pred CCcEEEEEcCCCC
Q 005956 504 DCRVYVWNYDELC 516 (667)
Q Consensus 504 Dg~I~iWd~~~~~ 516 (667)
||.|+||++..+.
T Consensus 275 Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 275 DNKVTLWKENLEG 287 (753)
T ss_dssp SSCEECCBCCSSS
T ss_pred CCEEEEEecCCCC
Confidence 9999999998654
No 69
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=1.7e-29 Score=263.81 Aligned_cols=248 Identities=22% Similarity=0.389 Sum_probs=205.2
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+++|.+.|++++|+|+|++|++|+.|+.|++|+....
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--------------------------------------- 118 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--------------------------------------- 118 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------------------------------------
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---------------------------------------
Confidence 34678899999999999999999999999999999998852
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe--eCCCcEEEEEEeeCC-CCEEEEEe
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF--DHHNYVTCVQFNPID-DNYFISGS 369 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~d-~~~l~sgs 369 (667)
........+...+..+.+++++ .|++++.|+.+++||+......... .|...+.+++|++.. ..++++++
T Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 119 ------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 2244455677888899999988 9999999999999999876655443 488999999998832 35788999
Q ss_pred cCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 370 IDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
.|+.|++||+.+++... +..|...|++++|+|++++|++|+.||.|++||+++...... +.. ...|.++.|
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~-----~~~v~~~~~ 264 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT---LDG-----GDIINALCF 264 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE---EEC-----SSCEEEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee---ecC-----CceEEeeec
Confidence 99999999999988765 667889999999999999999999999999999987655332 122 267999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCcceeeEE---------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDVIHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~---------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+|++ .+++++.|+.|++||+........ ...|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 265 ~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 265 SPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9985 577778899999999875332221 23478899999999999999999999999999999874
No 70
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=7.1e-30 Score=270.25 Aligned_cols=282 Identities=15% Similarity=0.139 Sum_probs=222.4
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+...++.+|...|++++|+|++ +|++|+.|++|+|||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence 4567899999999999999999 99999999999999999988877775 788999999999 99999999999999999
Q ss_pred ecCCC-------eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 378 GVCEK-------RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 378 dl~~~-------~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
++... .......|...|.+++|+|++..|++++.||+|++||+.+++.... + ..|...|.++.|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~---~----~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS---F----HGHGADVLCLDLAP 206 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---E----ECCSSCEEEEEECC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE---E----cCCCCCeEEEEEEe
Confidence 98643 2334567889999999999999999999999999999988765432 2 23457899999988
Q ss_pred CC-CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---ccCc
Q 005956 451 DE-SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ---KNSV 526 (667)
Q Consensus 451 ~g-~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~---~~~~ 526 (667)
+. +.+|++++.|+.|++||+...........|...|.+++|+|++.+|++|+.|++|++||+.......... ....
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 52 3799999999999999988655444445588999999999999999999999999999998875433221 1234
Q ss_pred cceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC
Q 005956 527 RSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS 595 (667)
Q Consensus 527 ~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~ 595 (667)
..++.|+|+|.+|+++..+.. ++++...... ....+..+...+....|||++.+++.|+..+.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~--i~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYT--INVWDVLKGS----RVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSC--EEEEETTTCS----EEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eeEEEEeCCCCEEEEEECCCc--EEEEECCCCc----eEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 567899999999999875542 2222111100 00112233445567789999999998876664
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.7e-30 Score=276.28 Aligned_cols=258 Identities=14% Similarity=0.187 Sum_probs=207.9
Q ss_pred cceeeccccccEEEEEEcCC----C---CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCc
Q 005956 214 TSQEIQAHKGCIWTLKFSPD----G---RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHV 286 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspd----g---~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (667)
....+.+|...|++++|+|+ | ++|++++.||.|++|++.+....
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~----------------------------- 104 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET----------------------------- 104 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-----------------------------
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc-----------------------------
Confidence 45667799999999999999 9 99999999999999999852210
Q ss_pred eeecCCCcccccCCcceeeecc-----ccceEEEEec----CCC-e-EEEEeCCCcEEEEecCC------CeEeE-----
Q 005956 287 PVVIPDEVFQIEESPLQELHGH-----KGDVLDLAWS----NSN-Y-LLSCSMDKTVRMWQVGC------NQCLN----- 344 (667)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~gh-----~~~V~~l~~s----~~~-~-l~s~s~Dg~I~iWd~~~------~~~~~----- 344 (667)
....+..+.+| ...|.+++|+ |++ + |++++.|+.|++||+.+ ++.+.
T Consensus 105 -----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 105 -----------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp -----------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred -----------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 00115666777 5899999999 888 7 99999999999999988 65554
Q ss_pred Ee--------eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecc---c---CCceEEEEEeeCCCEEEEE
Q 005956 345 VF--------DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WAD---V---RDVISAICYIPDGKGFIVG 409 (667)
Q Consensus 345 ~~--------~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~---~---~~~v~~v~~spdg~~l~~g 409 (667)
.+ .|...|.+++|+| ++ +|++++.|+.|++||+++++.+. +.. | ...|.+++|+|++++|+++
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~ 251 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence 44 2788999999999 88 99999999999999999988765 444 6 8899999999999999999
Q ss_pred ecC---CcEEEEEecCCcceeeeEeecc-------ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe
Q 005956 410 SIT---GTCHFYKASGNDLKLEKVDFHD-------RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG 479 (667)
Q Consensus 410 s~d---g~i~l~d~~~~~~~~~~~~~~~-------~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~ 479 (667)
+.| |.|++||+++.+.... +.... ....|...|++++|+|++ .+|++++.|+.|++||+.........
T Consensus 252 ~~d~~~g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 252 HDSNSFGCITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp EEETTEEEEEEEETTTCCEEEE-ECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEEEECCCCcccce-eccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 999 9999999987765432 11100 000145889999999996 89999999999999998755443333
Q ss_pred C------CC---------------CCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 005956 480 L------PK---------------SGSQMSASFTTTG----------KHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 480 ~------~~---------------~~~v~~v~~spdg----------~~l~sgs~Dg~I~iWd~~~~ 515 (667)
. .| ...|.+++|+|++ ++|++++.||.|+||++.++
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 3 45 8899999999998 79999999999999999876
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=3.4e-30 Score=302.26 Aligned_cols=355 Identities=19% Similarity=0.179 Sum_probs=261.8
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--------------------------------------- 86 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--------------------------------------- 86 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT---------------------------------------
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------------------------------
Confidence 34567789999999999999999999999999999999986
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC-eEeEEee-CCCcEEEEEEeeCCCCEEEEEe
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN-QCLNVFD-HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.++ .....+. |...|.+++|+|.+++.|++++
T Consensus 87 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 87 ------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 34467788999999999999999 9999999999999999887 5666654 8899999999996678999999
Q ss_pred cCCeEEEEecCCCeEEE-ec-ccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 370 IDGKVRIWGVCEKRVVD-WA-DVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~-~~-~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
.|+.|++||+.++.... .. .+...+.+++|+| ++.++++|+.+|.|++||+.+...... + ..|...|++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~------~~~~~~v~~ 233 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-L------EGHMSNVSF 233 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE-E------ECCSSCEEE
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE-E------cCCCCCEEE
Confidence 99999999998766443 33 3448899999999 999999999999999999987664322 2 123478999
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCCcccc---
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK--HIISIGDDCRVYVWNYDELCFPSS--- 520 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~Dg~I~iWd~~~~~~~~~--- 520 (667)
++|+|++ .++++++.||.|++||............+...+.+++|+|+|. ++++++ ++.+.+|++........
T Consensus 234 ~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (814)
T 3mkq_A 234 AVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDP 311 (814)
T ss_dssp EEECSSS-SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECS
T ss_pred EEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECC
Confidence 9999996 7999999999999999886555555555788999999999997 455555 67788998765321110
Q ss_pred -----------------------------------------ccccCccceeEEccCCcEEEEecCCCCcccccccCCCCC
Q 005956 521 -----------------------------------------KQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLR 559 (667)
Q Consensus 521 -----------------------------------------~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~ 559 (667)
.........+.|+|+|.+++++..+. +.++..
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~---~~i~~~---- 384 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGE---YVIYTA---- 384 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTE---EEEEET----
T ss_pred CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCE---EEEEEC----
Confidence 01111245678888888888876321 111111
Q ss_pred CcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccC
Q 005956 560 DCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAI 638 (667)
Q Consensus 560 ~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (667)
..|.. ..........|||++.+++.+...|. ..|..-+... .. .....
T Consensus 385 ---~~~~~--~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~-------~~-------------------v~~~~ 433 (814)
T 3mkq_A 385 ---LAWRN--KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT-------SW-------------------SVPMH 433 (814)
T ss_dssp ---TTTEE--EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT-------TC-------------------CCCCS
T ss_pred ---ccccc--cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc-------ce-------------------EEcCC
Confidence 01110 01123345678888888888776665 3342111000 00 00123
Q ss_pred CCCCc---eEEEecCCCCeEeeee
Q 005956 639 SATWG---LVIVTAGCDGMIKTFH 659 (667)
Q Consensus 639 ~~~~g---~vivta~~~G~ir~f~ 659 (667)
.++.| ..+++++-||.|++|.
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEEC
T ss_pred cCccceecceEEEEecCCEEEEEE
Confidence 34555 3568889999999996
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=264.77 Aligned_cols=244 Identities=15% Similarity=0.187 Sum_probs=207.1
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
...+.+|...|++++|+|++ +|++++.|+.|++||+.+++.+..+. |...|++++|+| ++++|++++.|+.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999999 99999999999999999999998886 899999999999 9999999999999999999
Q ss_pred CCCeEEEecccCCceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeecc----ccCcCCC--CeEEEEE
Q 005956 380 CEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHD----RKKTSGN--KITGIQF 448 (667)
Q Consensus 380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~----~~~~~~~--~I~~l~~ 448 (667)
.+++.+....+...+.+++|+|+++++++++.+ |.|++||+.............. ....+.. .+.+++|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999988777789999999999999999999999 9999999987654332111111 0111223 8999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccCcc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVR 527 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 527 (667)
+|++ .+|++++.|+.|++||+.. .........|...|.+++|+|++++|++++.|+.|++||+.++............
T Consensus 184 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 184 STKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp CGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred cCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 9986 7999999999999999876 4444444448899999999999999999999999999999998776655566667
Q ss_pred ceeEEccCCcEEEEecCCCC
Q 005956 528 SCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 528 ~~~~fs~dg~~lav~w~~~~ 547 (667)
..+.|+|++..++++.....
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~ 282 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEA 282 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-
T ss_pred eeEEecCCCceEEEeecCCC
Confidence 77899999999999876554
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=4.8e-30 Score=290.39 Aligned_cols=275 Identities=13% Similarity=0.164 Sum_probs=221.6
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. .
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------------------------~ 52 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------------------------K 52 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------------------------S
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------------------------c
Confidence 36899999999999999999998 78999999985210 0
Q ss_pred CCcceeeeccccc-eEEEEecC--CC-eEEEEeCCCcEEEEecCCC--------eEeEEee-CCCcEEEEEEeeCCCCEE
Q 005956 299 ESPLQELHGHKGD-VLDLAWSN--SN-YLLSCSMDKTVRMWQVGCN--------QCLNVFD-HHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 299 ~~~~~~l~gh~~~-V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~--------~~~~~~~-h~~~V~~l~f~p~d~~~l 365 (667)
......+.+|... |.+++|+| ++ +|++++.|++|++||+.++ +.+..+. |...|.+++|+| ++++|
T Consensus 53 ~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 131 (615)
T 1pgu_A 53 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRL 131 (615)
T ss_dssp SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEE
Confidence 1457788899999 99999999 99 9999999999999999754 5555554 889999999999 99999
Q ss_pred EEEecC----CeEEEEecCCCeEEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 366 ISGSID----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 366 ~sgs~D----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
++++.+ +.|++|| .......+..|...|.+++|+|+++ .+++++.||.|++||+.+.+.... + ..|.
T Consensus 132 ~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~----~~~~ 203 (615)
T 1pgu_A 132 CVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS---D----RTHH 203 (615)
T ss_dssp EEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE---E----CSSS
T ss_pred EEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee---e----cccC
Confidence 999988 7899999 3344556778999999999999998 899999999999999887654322 2 2234
Q ss_pred C---CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-C---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 441 N---KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-L---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 441 ~---~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
. .|++++|+|+++.+|++++.|+.|++||+.+....... . .|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 5 89999999992389999999999999998765444443 2 588999999999 99999999999999999999
Q ss_pred CCCcccccccc-----CccceeEEccCCcEEEEecCCC
Q 005956 514 ELCFPSSKQKN-----SVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 514 ~~~~~~~~~~~-----~~~~~~~fs~dg~~lav~w~~~ 546 (667)
+++........ .....+.|. ++..++++....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 87654332221 233344554 777777765543
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.5e-29 Score=273.31 Aligned_cols=271 Identities=20% Similarity=0.316 Sum_probs=222.0
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.+.+|.+.|++++|+|++ +|++|+.||+|+|||+.++
T Consensus 153 ~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-------------------------------------- 193 (464)
T 3v7d_B 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-------------------------------------- 193 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT--------------------------------------
T ss_pred cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--------------------------------------
Confidence 3456788999999999999988 9999999999999999863
Q ss_pred CcccccCCcceeeeccccceEEEEec--CCC-eEEEEeCCCcEEEEecCCCeEe-----------------------EEe
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWS--NSN-YLLSCSMDKTVRMWQVGCNQCL-----------------------NVF 346 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s--~~~-~l~s~s~Dg~I~iWd~~~~~~~-----------------------~~~ 346 (667)
+.+..+.+|...|.+++|+ +++ +|++++.|++|++||+.++... ..+
T Consensus 194 -------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 194 -------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp -------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred -------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 3466788999999999998 466 8999999999999999876532 223
Q ss_pred -eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCc
Q 005956 347 -DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 347 -~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~ 424 (667)
.|...|.++ ++ +++++++|+.|+.|++||+.+++.+. +..|...|.+++|+|+++.+++|+.||.|++||+++++
T Consensus 267 ~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 477888887 45 78999999999999999999988765 66788999999999999999999999999999998876
Q ss_pred ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 425 LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
.... ...|...|.++.|++ .++++++.||.|++||+.+....+... +...+..++|++++++|++|+ |
T Consensus 344 ~~~~-------~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d 411 (464)
T 3v7d_B 344 LMYT-------LQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E 411 (464)
T ss_dssp EEEE-------ECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T
T ss_pred EEEE-------EeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C
Confidence 5332 223458899999984 599999999999999998776666654 666778889999999999998 8
Q ss_pred CcEEEEEcCCCCcccc--ccccCccceeEEccCCcEEEEecCCC
Q 005956 505 CRVYVWNYDELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 505 g~I~iWd~~~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
|.|+|||+.+++.... ......+..+.|+ +..++++...+
T Consensus 412 g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~ 453 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD 453 (464)
T ss_dssp TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence 9999999999887543 3334555566775 55555554443
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-30 Score=273.48 Aligned_cols=271 Identities=18% Similarity=0.231 Sum_probs=215.1
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCC----------ceeeeeeCCCCC-ccccCCCCeEEecccCCCCce
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSV----------AASCKSFTDDGG-FGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (667)
.+|.+.|++++|+|++++||+|+.||.|+|||.... ...++.+.+++. ++....++.+.+++....
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--- 181 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--- 181 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT---
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC---
Confidence 358999999999999999999999999999994421 234455555554 333444555555554322
Q ss_pred eecCCCcccccCCcceeeeccccc---------------eEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCc
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGD---------------VLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY 351 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~---------------V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~ 351 (667)
+.+..+..|... +.+++|++++.+++++.|+.|++||+.+++.+..+. |...
T Consensus 182 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 249 (425)
T 1r5m_A 182 ------------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP 249 (425)
T ss_dssp ------------EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC
T ss_pred ------------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc
Confidence 334445555554 999999999999999999999999999998887774 8899
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
|.+++|+| ++++|++++.|+.|++||+.+++... +..+...|.+++|+|++ .+++++.||.|++||+.+...... +
T Consensus 250 i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~ 326 (425)
T 1r5m_A 250 ISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL-S 326 (425)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE-E
T ss_pred eEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe-c
Confidence 99999999 89999999999999999999877654 55688999999999999 999999999999999987664332 2
Q ss_pred eeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--------------------eeEEeCCCCC--CeEE
Q 005956 431 DFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--------------------HKFKGLPKSG--SQMS 488 (667)
Q Consensus 431 ~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--------------------~~~~~~~~~~--~v~~ 488 (667)
. .+...|++++|+|++ .+|++++.||.|++||+.... .......|.. .|.+
T Consensus 327 ~------~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 327 I------VDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp E------CTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred c------cCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 1 234789999999996 899999999999999987433 3333333544 9999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 489 ASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 489 v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
++|+|++++|++++.||.|++|+++.
T Consensus 400 ~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 400 LSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEccCCCceEEEEecCceEEEEeecC
Confidence 99999999999999999999999863
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=300.23 Aligned_cols=370 Identities=11% Similarity=0.070 Sum_probs=245.0
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCce----------eeeeeCCCCCc-cccCCCCeEEecccCCCCcee
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAA----------SCKSFTDDGGF-GSNAKEGKIKFGKKKSSHVPV 288 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 288 (667)
.|.+.|++++|+| |++||+++.|++|+|||+.++.. .++.|.+++.. .....++.+.+|+........
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 4888999999999 88999999999999999987543 34555666643 345566777777655432210
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-C-----------------
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-H----------------- 348 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h----------------- 348 (667)
......+. ....+.+|.+.|.+++|+|++ .|++|+.|++| +||+.+++++..+. |
T Consensus 135 ~~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 135 FKLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ceeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 00000000 002346899999999999964 89999999999 99999999988875 3
Q ss_pred -CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe--c-----------------ccCCceEEEEEee----CC-
Q 005956 349 -HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW--A-----------------DVRDVISAICYIP----DG- 403 (667)
Q Consensus 349 -~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~--~-----------------~~~~~v~~v~~sp----dg- 403 (667)
...|++++|+| ++.+|++|+.|++|++||+.+++.+.. . .+...|++++|++ ++
T Consensus 210 h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~ 288 (902)
T 2oaj_A 210 RTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT 288 (902)
T ss_dssp BCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE
T ss_pred cCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC
Confidence 36799999999 999999999999999999999887642 1 1234799999965 32
Q ss_pred CEEEEEecC-----CcEEEEEecCC------------------cce----------------------------------
Q 005956 404 KGFIVGSIT-----GTCHFYKASGN------------------DLK---------------------------------- 426 (667)
Q Consensus 404 ~~l~~gs~d-----g~i~l~d~~~~------------------~~~---------------------------------- 426 (667)
..+++|+.+ ..+.+|++... +..
T Consensus 289 ~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~ 368 (902)
T 2oaj_A 289 SLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLIL 368 (902)
T ss_dssp EEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEE
T ss_pred EEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEE
Confidence 456666554 26777763100 000
Q ss_pred -------eeeEeec-c-----------ccCcCCCCeEEE----------------------------------EEccCCC
Q 005956 427 -------LEKVDFH-D-----------RKKTSGNKITGI----------------------------------QFSRDES 453 (667)
Q Consensus 427 -------~~~~~~~-~-----------~~~~~~~~I~~l----------------------------------~~sp~g~ 453 (667)
...+.+. + ....+...|+++ +|+|++
T Consensus 369 ~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg- 447 (902)
T 2oaj_A 369 LILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG- 447 (902)
T ss_dssp EEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-
T ss_pred EEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-
Confidence 0000000 0 000112344444 446774
Q ss_pred eEEEEEeCCCcEEEEECCcce----eeEEe-------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc-----
Q 005956 454 QRIMITSEDSKLRILDGVDVI----HKFKG-------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF----- 517 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~----~~~~~-------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~----- 517 (667)
++|++++.|++|++||+.... ..+.. ..|...|.+++|+|||++||+|+.||+|+||++.+++.
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 899999999999999976431 11211 14788999999999999999999999999999987631
Q ss_pred ----------------------------------------c-ccccccCccceeEEccCCcEEEEecCCCCcccccccCC
Q 005956 518 ----------------------------------------P-SSKQKNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSS 556 (667)
Q Consensus 518 ----------------------------------------~-~~~~~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~ 556 (667)
. ....+...+.+++|+||| +||++..+..- +++...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv--~lwd~~ 604 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL--MLIDRR 604 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE--EEEETT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE--EEEECC
Confidence 0 111234456677899999 99988765422 222211
Q ss_pred CCCCcCc-cCcCCC-CCCcccCCCccc-----CCC---CCCCCCCCCCC-CCCCC
Q 005956 557 SLRDCSQ-KWDNLE-TAPWIRDSERFS-----LGS---WFSNDGPCRGS-ATWPA 600 (667)
Q Consensus 557 ~~~~~~~-~w~~~~-~~~~~~~~~~fS-----~~~---~~~~~g~~~g~-~~w~~ 600 (667)
....-.. ....+. .+...+....|| +++ .+++.|...+. .+|..
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 1000000 001111 334456778999 774 78888887776 56764
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.3e-29 Score=270.44 Aligned_cols=247 Identities=14% Similarity=0.186 Sum_probs=196.4
Q ss_pred ccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 219 QAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 219 ~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
.+|.+.|++++|+| ++++|++++.||.|++||+.+...
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------------------------------- 153 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI----------------------------------------- 153 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-----------------------------------------
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-----------------------------------------
Confidence 47999999999999 789999999999999999984111
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCC-EEEEEecCCeE
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDN-YFISGSIDGKV 374 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~-~l~sgs~Dg~v 374 (667)
.......+|...|.+++|+|++ +|++++.|+.|++||+. ++++..+ .|...|.+++|+| ++. +|++++.|+.|
T Consensus 154 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 154 --QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATV 229 (383)
T ss_dssp --EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEE
T ss_pred --EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEE
Confidence 0112223456889999999999 99999999999999995 5566655 4999999999999 777 99999999999
Q ss_pred EEEecCC----CeEEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC---------
Q 005956 375 RIWGVCE----KRVVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG--------- 440 (667)
Q Consensus 375 ~iwdl~~----~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~--------- 440 (667)
++||+++ +..+....+...|.+++|+| ++++|++++.||.|++||+++................+.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred EEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence 9999998 66776668999999999999 999999999999999999988766443221111111122
Q ss_pred -CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 441 -NKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 441 -~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
..+..++|+|++ .+ +++.|+.|+|||+.+ ....+.++.+...+..++|+|++++|++|+ |+.|+|||+++
T Consensus 310 ~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 310 MYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 344456666665 33 677999999999874 445555554667788889999999999997 99999999875
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.6e-30 Score=276.11 Aligned_cols=256 Identities=18% Similarity=0.271 Sum_probs=212.5
Q ss_pred ceeeccccccEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAHKGCIWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
...+.+|.+.|++++|+| ++++||+|+.||+|+||++.+.....
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------------------------- 118 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------------------------- 118 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----------------------------------
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----------------------------------
Confidence 345779999999999999 99999999999999999998632110
Q ss_pred cccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe--e-CCCcEEEEEEeeCCCCEEEEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF--D-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~--~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
....++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|+++
T Consensus 119 ---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 194 (402)
T 2aq5_A 119 ---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTS 194 (402)
T ss_dssp ---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEE
T ss_pred ---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEE
Confidence 0124678889999999999999996 8999999999999999999999888 3 899999999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEEe--cccCCc-eEEEEEeeCCCEEEEE---ecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVDW--ADVRDV-ISAICYIPDGKGFIVG---SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~--~~~~~~-v~~v~~spdg~~l~~g---s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.|+.|++||+++++.+.. ..|.+. +.+++|+|++++|++| +.++.|++||+++........... +...
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~ 269 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-----TSSG 269 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-----CCSS
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-----CCCc
Confidence 9999999999999887754 356554 8999999999999999 789999999998766533322222 2367
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+.+++|+|++..++++++.|+.|++||+... ...+..+.+...+.+++|+|++.++++ .++.+++|++.++.
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 9999999997444456668999999998743 455666557789999999999998875 56799999998754
No 80
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=2.4e-30 Score=276.63 Aligned_cols=292 Identities=15% Similarity=0.198 Sum_probs=224.2
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
....++.+|.+.|++++|+|++ +|++|+.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIF 135 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEE
Confidence 3467899999999999999999 99999999999999999999888886 889999999999 99999999999999999
Q ss_pred ecCCCe--------EEEecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 378 GVCEKR--------VVDWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 378 dl~~~~--------~~~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
|+.+.. ...+..|.+.+.++.|.|+ +..|++|+.|++|++||+.++..... +. ......|...|.++.|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~-~~-~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI-FG-SEFPSGHTADVLSLSI 213 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE-EC-CCSSSSCCSCEEEEEE
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE-ee-cccCCCCccCeEEEEe
Confidence 997532 1235678889999999996 45799999999999999998765432 11 1112346788999999
Q ss_pred ccCCCeEEEEEeCCCcEEEEECC---cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc---
Q 005956 449 SRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ--- 522 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--- 522 (667)
++.+..++++++.|+.|++||++ .....+. .|...|.+++|+|++++|++|+.||+|+|||+.++.......
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 88556899999999999999986 2334444 488999999999999999999999999999999876533211
Q ss_pred -----ccCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccC-cCCCCCCcccCCCcccCCCCCCCCCCCCCC-
Q 005956 523 -----KNSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKW-DNLETAPWIRDSERFSLGSWFSNDGPCRGS- 595 (667)
Q Consensus 523 -----~~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~fS~~~~~~~~g~~~g~- 595 (667)
......+++|+|+|.+++++..... ++++....... .... .....+...+....|||++.+++.|+..+.
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~--i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGD--CYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSC--EEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCC--EEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 1123567899999999999765432 22221111000 0000 001233445667789999999999887776
Q ss_pred CCCC
Q 005956 596 ATWP 599 (667)
Q Consensus 596 ~~w~ 599 (667)
..|.
T Consensus 369 ~iW~ 372 (380)
T 3iz6_a 369 KIWA 372 (380)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 3464
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.6e-29 Score=269.23 Aligned_cols=243 Identities=21% Similarity=0.334 Sum_probs=202.7
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|.+.|++++|+|++++|++|+.||.|+|||+.+ .
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------------------------~ 166 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES---------------------------------------------Q 166 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---------------------------------------------C
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC---------------------------------------------C
Confidence 3899999999999999999999999999999986 2
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecC-CCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG-CNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~-~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+.+..+.+|...|.+++|++ ..|++++.|+.|++||+. ....+..+ .|...|.+++|+| ++++|++|+.|+.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence 44667789999999999943 399999999999999998 45555555 4999999999999 99999999999999999
Q ss_pred ecCCCeEEE-ecccCCceEEEEEeeCCC-EEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 378 GVCEKRVVD-WADVRDVISAICYIPDGK-GFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 378 dl~~~~~~~-~~~~~~~v~~v~~spdg~-~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
|+.+++... +..+...|.+++|+|++. .+++|+ .||.|++||+.+...... +. +...|++++|+|++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~-------~~~~v~~~~~s~~~- 315 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VD-------AGSQVTSLIWSPHS- 315 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EE-------CSSCEEEEEECSSS-
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-Ee-------CCCcEEEEEECCCC-
Confidence 999887664 567889999999999775 555554 799999999987765432 21 23679999999996
Q ss_pred eEEEEE--eCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 454 QRIMIT--SEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 454 ~~l~~~--s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
.+++++ +.||.|++||+.. .........|...|.+++|+|+|++|++++.||.|++|++.+++..
T Consensus 316 ~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 667774 4899999999875 4445445568899999999999999999999999999999987653
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.1e-29 Score=273.82 Aligned_cols=258 Identities=21% Similarity=0.302 Sum_probs=210.5
Q ss_pred eeccccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 217 EIQAHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+.+|.+.|++++|+|+ +.+||+|+.||.|+||++........ .
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------------~ 167 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------------P 167 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------T
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------c
Confidence 34579999999999997 78999999999999999975211000 0
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeE-------eEEe-eCCCcEEEEEEeeCCCCEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQC-------LNVF-DHHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~-------~~~~-~h~~~V~~l~f~p~d~~~l 365 (667)
.....++..+.+|...|.+++|+|++ +|++|+.||+|++|++.++.. ...+ .|...|.+++|+|.++.+|
T Consensus 168 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 00135678888999999999999986 899999999999999987321 2334 5889999999999778899
Q ss_pred EEEecCCeEEEEecCCC---e-EEEecccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 366 ISGSIDGKVRIWGVCEK---R-VVDWADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~---~-~~~~~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
++++.|+.|++||++++ + ......|...|++++|+|++. .+++|+.||.|++||++........+. .|.
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~------~h~ 321 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------SHK 321 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE------CCS
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee------cCC
Confidence 99999999999999976 2 334567889999999999987 688999999999999997544333332 234
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------------ceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCC
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVD--------------VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDC 505 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg 505 (667)
..|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+++|+|+++ +|++++.||
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 78999999999877899999999999999865 233444445788999999999999 999999999
Q ss_pred cEEEEEcCCC
Q 005956 506 RVYVWNYDEL 515 (667)
Q Consensus 506 ~I~iWd~~~~ 515 (667)
.|+||++...
T Consensus 402 ~i~iw~~~~~ 411 (430)
T 2xyi_A 402 IMQVWQMAEN 411 (430)
T ss_dssp EEEEEEECHH
T ss_pred CEEEeEcccc
Confidence 9999999764
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4e-29 Score=268.89 Aligned_cols=270 Identities=14% Similarity=0.195 Sum_probs=216.9
Q ss_pred eccccccE--EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 218 IQAHKGCI--WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 218 l~~H~~~I--~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+|...+ .++.|++ ..+++++.||.|+||++.++..
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~--------------------------------------- 125 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV--------------------------------------- 125 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------------------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------------------
Confidence 44676654 4466654 5688899999999999986432
Q ss_pred cccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
...+. .|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+ +++|++|+.|+
T Consensus 126 ------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg 196 (401)
T 4aez_A 126 ------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSG 196 (401)
T ss_dssp ------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTS
T ss_pred ------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCC
Confidence 23333 388999999999999 99999999999999999999888885 89999999994 57999999999
Q ss_pred eEEEEecCC-Ce-EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 373 KVRIWGVCE-KR-VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 373 ~v~iwdl~~-~~-~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
.|++||++. .. ...+..|...|.+++|+|++++|++|+.||.|++||+++...... ...+...|.+++|+|
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-------KTNHNAAVKAVAWCP 269 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE-------ECCCSSCCCEEEECT
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE-------ecCCcceEEEEEECC
Confidence 999999984 33 445778899999999999999999999999999999987654322 123457899999999
Q ss_pred CCCeEEEEEe--CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcccc---ccc
Q 005956 451 DESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSS---KQK 523 (667)
Q Consensus 451 ~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~---~~~ 523 (667)
++..++++++ .|+.|++||+.......... +...+.+++|+|++++|++++ .||.|+||++.++..... ...
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h 348 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence 8777888876 79999999987544333332 567899999999999999954 899999999988654322 234
Q ss_pred cCccceeEEccCCcEEEEecCC
Q 005956 524 NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 524 ~~~~~~~~fs~dg~~lav~w~~ 545 (667)
...+.++.|+|+|.+|+++..+
T Consensus 349 ~~~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp SSCCCEEEECTTSSEEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEEeCC
Confidence 4566778999999999887543
No 84
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-28 Score=253.12 Aligned_cols=250 Identities=20% Similarity=0.277 Sum_probs=205.4
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.+..|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~------------------------------------- 92 (313)
T 3odt_A 50 WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS------------------------------------- 92 (313)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT-------------------------------------
T ss_pred EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC-------------------------------------
Confidence 3455677899999999999999999999999999999997521
Q ss_pred CcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecC
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSID 371 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~D 371 (667)
..+++..+.+|...|.+++|. .++|++++.|+.|++|| .++.+..+. |...|.++.|.|.+++++++++.|
T Consensus 93 -----~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 93 -----GEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp -----TSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred -----CCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 124567788999999999993 34999999999999999 566666664 899999999999889999999999
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
+.|++||...........+...+.+++|+|++. +++++.+|.|++||+++.+.... + ..|...|++++|+|+
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~-~------~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT-Y------EGHESFVYCIKLLPN 236 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEECTT
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh-h------hcCCceEEEEEEecC
Confidence 999999943332223333888999999999998 99999999999999987765432 2 224578999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
+ .+++++.|+.|++||+.+.........|...|.+++|+|+++ +++++.||.|++|++.+++..
T Consensus 237 ~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 237 G--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp S--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred C--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 6 589999999999999876544444444788999999999998 567889999999999887543
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.2e-29 Score=264.20 Aligned_cols=251 Identities=13% Similarity=0.164 Sum_probs=204.8
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+.+|.+.|++++|+|++++|++++.||.|++||+.+...
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------------- 86 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW------------------------------------- 86 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------------------
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-------------------------------------
Confidence 4567789999999999999999999999999999999975321
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEe--eCCCcEEEEEEeeCCCCEEEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVF--DHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~--~h~~~V~~l~f~p~d~~~l~s 367 (667)
.....+.+|...|.+++|+|++ +|++++.|+.|++||+..+.. ...+ .|...|.+++|+| ++++|++
T Consensus 87 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 159 (372)
T 1k8k_C 87 ------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAA 159 (372)
T ss_dssp ------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEE
T ss_pred ------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEE
Confidence 1123346789999999999999 999999999999999988762 3333 3788999999999 9999999
Q ss_pred EecCCeEEEEecC------------------CCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 368 GSIDGKVRIWGVC------------------EKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 368 gs~Dg~v~iwdl~------------------~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
++.|+.|++||+. .++.+. +..|...|.+++|+|++++|++++.||.|++||+++.+....
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEE
Confidence 9999999999964 455544 557888999999999999999999999999999987765432
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--cee---------------------e---------
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIH---------------------K--------- 476 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~---------------------~--------- 476 (667)
+. .+...|++++|+|++ .+++++ .|+.|++||+.. ... .
T Consensus 240 -~~------~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 240 -LA------SETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp -EE------CSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred -Ec------cCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 22 234789999999996 666655 999999999765 210 0
Q ss_pred --------EEe-CCCCCCeEEEEEc-CCC---CEEEEEeCCCcEEEEEcCCCCc
Q 005956 477 --------FKG-LPKSGSQMSASFT-TTG---KHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 477 --------~~~-~~~~~~v~~v~~s-pdg---~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
... ..|...|.+++|. ++| .+|++|+.||.|+||++.+++.
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 111 2588899999965 777 9999999999999999977543
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.4e-28 Score=265.20 Aligned_cols=299 Identities=18% Similarity=0.268 Sum_probs=231.7
Q ss_pred ccceeeccccccE-EEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC----------CccccCCCCeEEeccc
Q 005956 213 YTSQEIQAHKGCI-WTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----------GFGSNAKEGKIKFGKK 281 (667)
Q Consensus 213 ~~~~~l~~H~~~I-~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 281 (667)
...+.+.+|.+.| ++ ++++|++|++|+.||+|+|||+.++..........+ .+.....++.+.+++.
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEEC
Confidence 3456789999975 55 445689999999999999999987654432221111 2222333444444433
Q ss_pred CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeC
Q 005956 282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPI 360 (667)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~ 360 (667)
. ..+.+..+.+|...|.++.|++ +.|++++.|++|++||+.+++++..+. |...|.+++|
T Consensus 187 ~---------------~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--- 247 (445)
T 2ovr_B 187 E---------------TGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--- 247 (445)
T ss_dssp T---------------TTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE---
T ss_pred C---------------cCcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE---
Confidence 2 2345677889999999999963 489999999999999999999888875 8899999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+++++++|+.|+.|++||+.+++.+. +..|...|.+++| +++++++|+.||.|++||+++++.... ...+
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~ 318 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHT-------LTGH 318 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEE-------ECCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEE-------EcCC
Confidence 57899999999999999999988765 5668889999998 889999999999999999988765432 1233
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
...+.++.+.+ .++++++.||.|++||+.+........ .|...|.+++|+ +++|++|+.||.|++||+.+++
T Consensus 319 ~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 319 QSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp CSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred cccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 46788888854 489999999999999987544333332 277889999995 6899999999999999999987
Q ss_pred ccccc------cccCccceeEEccCCcEEEEecCCC
Q 005956 517 FPSSK------QKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 517 ~~~~~------~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
..... .....+..+.|+|++.++|++..+.
T Consensus 394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 64332 3445567789999999999876654
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1e-28 Score=254.59 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=189.7
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC--CeEeEEe-eCCCcEEEEEEeeC-CCCEEEEEecCCeEEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC--NQCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVRI 376 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~--~~~~~~~-~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~i 376 (667)
+..+.+|...|.+++|+|++ +|++|+.|++|+|||+.. .+++..+ .|...|++++|+|. ++++|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 34577999999999999999 999999999999999974 3566666 49999999999862 4889999999999999
Q ss_pred EecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 377 WGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 377 wdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
||+.+++ ......|...|.+++|+|+ |.+|++|+.||.|++||++....... ..+ ..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~----~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-III----DAHAIGVNSASWAPA 156 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEE----ECCSSCEEEEEECCC
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eee----ecccCccceEeecCC
Confidence 9998874 3345668889999999997 89999999999999999986532211 111 234578999999997
Q ss_pred C------------CeEEEEEeCCCcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEc
Q 005956 452 E------------SQRIMITSEDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNY 512 (667)
Q Consensus 452 g------------~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg---~~l~sgs~Dg~I~iWd~ 512 (667)
+ +.+|++++.|+.|++||+.... .......|...|.+++|+|++ .+|++++.|++|+|||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 3 3689999999999999976422 222334588999999999995 89999999999999999
Q ss_pred CCCCcc----cc--ccccCccceeEEccCCcEEEEecCC
Q 005956 513 DELCFP----SS--KQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 513 ~~~~~~----~~--~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
.+.... .. ......+..+.|+|+|.+||++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 875321 11 1223445567999999998886553
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.2e-30 Score=272.46 Aligned_cols=252 Identities=11% Similarity=0.151 Sum_probs=191.2
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
...+.+.+|.+.|++++|+|++++|++|+.||+|+|||+.+..
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~------------------------------------- 88 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG------------------------------------- 88 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------------------------------------------
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-------------------------------------
Confidence 3456778999999999999999999999999999999998632
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe---EeEEee--CCCcEEEEEEeeCCCCEEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~---~~~~~~--h~~~V~~l~f~p~d~~~l~ 366 (667)
...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++ +...+. |...|++++|+| ++++|+
T Consensus 89 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 162 (377)
T 3dwl_C 89 -----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLA 162 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEE
T ss_pred -----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEE
Confidence 012456677899999999999998 99999999999999999887 355554 899999999999 999999
Q ss_pred EEecCCeEEEEecC------------------CCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 367 SGSIDGKVRIWGVC------------------EKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 367 sgs~Dg~v~iwdl~------------------~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
+++.|++|++||+. .++++....|...|++++|+|+|++|++++.||.|++||+.+......
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 99999999999985 244444338889999999999999999999999999999998776321
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----------------------------------
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---------------------------------- 474 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------------------------------- 474 (667)
.+ .....|...|++++|+|++ .+|++++.++.+ +|+.....
T Consensus 243 ~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (377)
T 3dwl_C 243 AL---ITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF 317 (377)
T ss_dssp EC---CCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred ee---EeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccc
Confidence 00 1122345789999999996 777777665555 77643100
Q ss_pred ----eeEEe--------------CCCCCCeEEEEEcCCC-C---EEEEEeCCCcEEEEEc
Q 005956 475 ----HKFKG--------------LPKSGSQMSASFTTTG-K---HIISIGDDCRVYVWNY 512 (667)
Q Consensus 475 ----~~~~~--------------~~~~~~v~~v~~spdg-~---~l~sgs~Dg~I~iWd~ 512 (667)
..+.. ..|...|+++++.+.. . .|+|||.||.|+|||+
T Consensus 318 ~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00110 1278889999975543 3 6999999999999985
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.3e-29 Score=273.94 Aligned_cols=290 Identities=14% Similarity=0.169 Sum_probs=214.5
Q ss_pred ceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
.....+|...|++|+|+|.+ +|++|+.||+|+|||+.+++....+ +|...|++++|+|.++++|++|+.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 45567899999999999954 8999999999999999877654433 599999999999977899999999999999
Q ss_pred EecCCCeEEEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 377 WGVCEKRVVDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 377 wdl~~~~~~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
||++++....... +...+.+++|+|++++|++|+.||.|++||+++.... ....|...|++++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--------~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--------NLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--------CSBCCSSCEEEEEECTTCS
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--------EEecccceEEeeeecCCCc
Confidence 9999876654333 3445789999999999999999999999999754322 1234568899999999987
Q ss_pred eEEEEEeCCCcEEEEECCccee---eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc-----
Q 005956 454 QRIMITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK----- 523 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~----- 523 (667)
.++++++.|+.|+|||+..... ......|...|.+++|+|+|++|++++.||.|+|||+.++...... +.
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 7899999999999999874321 1222347889999999999999999999999999999987654321 11
Q ss_pred cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCC---------CCCCcccCCC-cccCCCCCCCCCCCC
Q 005956 524 NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNL---------ETAPWIRDSE-RFSLGSWFSNDGPCR 593 (667)
Q Consensus 524 ~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~---------~~~~~~~~~~-~fS~~~~~~~~g~~~ 593 (667)
........|+|++..++++..+++..+.. ..........|... ......+... .|||++.+++.|++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~ 421 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSC--TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY 421 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCS--STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEE--EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence 11122357999999999987766543211 11111122233211 1111122232 599999999988754
Q ss_pred CCCCCCCC
Q 005956 594 GSATWPAE 601 (667)
Q Consensus 594 g~~~w~~~ 601 (667)
.-..|..+
T Consensus 422 ~i~iW~~~ 429 (435)
T 4e54_B 422 HILIWSQQ 429 (435)
T ss_dssp EEEECCCC
T ss_pred cEEEEECC
Confidence 44567654
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.1e-28 Score=265.01 Aligned_cols=244 Identities=17% Similarity=0.302 Sum_probs=202.0
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~------------------------------------------- 178 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ------------------------------------------- 178 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------------------------
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------------------------
Confidence 3457889999999999999999999999999999986
Q ss_pred ccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.+.+..+.+|...|.+++|++ ..|++|+.|+.+++||..... .+..+ .|...+.++.|+| ++.++++++.|+.+
T Consensus 179 --~~~~~~~~~h~~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v 254 (420)
T 4gga_A 179 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV 254 (420)
T ss_dssp --TEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --CcEEEEEeCCCCceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccc
Confidence 344677889999999998863 389999999999999997643 44444 4999999999999 99999999999999
Q ss_pred EEEecCCCeE-----EEecccCCceEEEEEeeCCC-EEEE--EecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 375 RIWGVCEKRV-----VDWADVRDVISAICYIPDGK-GFIV--GSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 375 ~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~-~l~~--gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
++||+..++. .....+...|.+++|+|++. .+++ |+.|+.|++||+.++..... + .. ...+.++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~-~--~~-----~~~v~~~ 326 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-V--DA-----HSQVCSI 326 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE-E--EC-----SSCEEEE
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee-e--cc-----ccceeee
Confidence 9999987652 34667888999999999664 5554 34799999999998765432 1 11 2679999
Q ss_pred EEccCCCeEEEEEe--CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 447 QFSRDESQRIMITS--EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 447 ~~sp~g~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.|+|++ ..+++++ .|+.|+|||+.+........+|...|.+++|+|||++|+||+.|++|+|||+.+..
T Consensus 327 ~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 327 LWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred eecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999997 4555443 78999999988665555555689999999999999999999999999999997654
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=9.5e-29 Score=265.81 Aligned_cols=270 Identities=14% Similarity=0.186 Sum_probs=211.8
Q ss_pred cEEEEEEcCCCCE-EEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 224 CIWTLKFSPDGRY-LASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 224 ~I~~v~fspdg~~-Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
....++++|+... +++++.||.|+||++..... ....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------------------------------~~~~~ 74 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-----------------------------------------VDKNV 74 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-----------------------------------------CCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-----------------------------------------CCCCC
Confidence 4456889998764 44578999999999864211 01345
Q ss_pred eeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCC-------eEeEEee-CCCcEEEEEEeeCCC-CEEEEEecC
Q 005956 303 QELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCN-------QCLNVFD-HHNYVTCVQFNPIDD-NYFISGSID 371 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~-------~~~~~~~-h~~~V~~l~f~p~d~-~~l~sgs~D 371 (667)
..+.+|.+.|++++|+| ++ +|++|+.|++|+|||+.++ +++..+. |...|++++|+| ++ ++|++++.|
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~d 153 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCD 153 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETT
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCC
Confidence 56789999999999999 77 9999999999999999987 4556664 999999999999 65 799999999
Q ss_pred CeEEEEecCCCeEEE-e--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 372 GKVRIWGVCEKRVVD-W--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 372 g~v~iwdl~~~~~~~-~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
+.|++||+.+++.+. + ..|...|.+++|+|++++|++++.||.|++||+++..........+. ...+..+.|
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~ 228 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE-----GTRPVHAVF 228 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC-----SSSCCEEEE
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC-----CCcceEEEE
Confidence 999999999988775 4 56889999999999999999999999999999998665432111111 134899999
Q ss_pred ccCCCeEEEEE---eCCCcEEEEECCccee--eEEeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCc--ccc
Q 005956 449 SRDESQRIMIT---SEDSKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIIS-IGDDCRVYVWNYDELCF--PSS 520 (667)
Q Consensus 449 sp~g~~~l~~~---s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~~~--~~~ 520 (667)
+|++ .+|+++ +.|+.|++||+..... ......+...+.+++|+|++++|++ |+.||.|++|++.+++. ...
T Consensus 229 ~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 229 VSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp CSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred cCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 9995 788888 7999999999875322 2223346778999999999999975 55799999999998763 111
Q ss_pred c--cccCccceeEEccCCcEEEE
Q 005956 521 K--QKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 521 ~--~~~~~~~~~~fs~dg~~lav 541 (667)
. ........+.|+|++.+++.
T Consensus 308 ~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 308 SMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp EEECCSSCCSEEEECCGGGSCGG
T ss_pred cccccCCcccceEEeccccccee
Confidence 1 22355667789998887653
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=272.76 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=211.1
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCcee--------eeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAAS--------CKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.-...|.+++|||||+++||++.|++|+ |....... .+.|.|++. .+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~------~~~---------------- 68 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEF------ENK---------------- 68 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCC------CCT----------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCC------cce----------------
Confidence 3457899999999999999999999999 75543321 233333330 000
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEEEEEeeCCCCEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTCVQFNPIDDNYF 365 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~d~~~l 365 (667)
..++......+..+ +|...|.+++|+|+| .|++++.||+|+|||..+ ++..+.|.. .|.+++|+| ++++|
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSP-DG~~L 144 (588)
T 2j04_A 69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNP-IESSI 144 (588)
T ss_dssp TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECS-SSSCE
T ss_pred EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcC-CCCEE
Confidence 01111111122222 568899999999999 999999999999999654 666666444 499999999 99999
Q ss_pred EEEecCCeEEEEecCCCeE--------EEe----cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956 366 ISGSIDGKVRIWGVCEKRV--------VDW----ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 366 ~sgs~Dg~v~iwdl~~~~~--------~~~----~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
++|+.||+|+|||+.++.. ..+ .+|...|.+++|+||| +++++.|+.+++||+.++........+.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999998852 223 5577899999999999 8889999999999998876421001111
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEE
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASF--TTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~--spdg~~l~sgs~Dg~I~iW 510 (667)
..|...|.+++|+ | ..|++++ +++|++||...... .+. .+|...+..++| +|++..|+++++||+ ++|
T Consensus 223 ---~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 223 ---NASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp ---CCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred ---ccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 1234789999999 3 5888887 69999999886655 444 248999999999 999999999999999 999
Q ss_pred EcCC------CCc-----------------cccccccCccceeEEccCCcEEEEecCC
Q 005956 511 NYDE------LCF-----------------PSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 511 d~~~------~~~-----------------~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
..+. +.. .........+..++|+|||+++|++..-
T Consensus 294 ~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 294 LEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp ESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred eeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 8742 110 0000112234568999999999998765
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=281.62 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=203.0
Q ss_pred eeeccccccEEEEEEcCC------CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 216 QEIQAHKGCIWTLKFSPD------GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspd------g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
+.+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.+...... . .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~---------------~-----------~-- 252 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH---------------V-----------F-- 252 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS---------------E-----------E--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc---------------c-----------c--
Confidence 456788999999999997 57999999999999999975321000 0 0
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEE--EEeeCCC-CE
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCV--QFNPIDD-NY 364 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l--~f~p~d~-~~ 364 (667)
.....+...+.+|...|++++|++++.|++|+.||+|++||+.++. +...+ .|...|+++ .|+| ++ .+
T Consensus 253 ------~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~ 325 (524)
T 2j04_B 253 ------KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTV 325 (524)
T ss_dssp ------ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCE
T ss_pred ------eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeE
Confidence 0012456678899999999999987899999999999999998764 44444 599999999 4566 76 89
Q ss_pred EEEEecCCeEEEEecCCCeEEE-ecccC--CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC
Q 005956 365 FISGSIDGKVRIWGVCEKRVVD-WADVR--DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~-~~~~~--~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~ 441 (667)
|++|+.|++|+|||+++++... +..+. ..|.+++|+|+++.+++++.|++|++||++....... +. .|..
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~---l~----gH~~ 398 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP---LV----SRET 398 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---EE----ECSS
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---ee----cCCC
Confidence 9999999999999999876432 22332 2478999999999999999999999999988665322 11 2458
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCcce-eeEEe---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG---LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~---~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.|++++|+|+| .+|++|+.|++|++||..... ...+. ..+...+..++|+|+|+.+. ...+-.+..|+......
T Consensus 399 ~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 399 TITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDVSK 476 (524)
T ss_dssp CEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--------
T ss_pred ceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCcce
Confidence 99999999996 789999999999999975421 11111 01222467999999998553 32232333333333333
Q ss_pred cccccccCccceeEEccCCc---EEEEecC
Q 005956 518 PSSKQKNSVRSCEHFFSEGV---SVAVQWP 544 (667)
Q Consensus 518 ~~~~~~~~~~~~~~fs~dg~---~lav~w~ 544 (667)
.........+.+++|+|++. .+|.+..
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 33334445666779999964 7777654
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.5e-27 Score=258.39 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=217.4
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.++.|+||++ ++||+|. |++|+|||+.++... .+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------------------------~~~ 141 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLL 141 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEE
Confidence 3678999986 4788775 899999999874331 123
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.+.+|...|++|+|+|++ +|++|+.|++|+|||+.+++++..+. |...+.++.++ +.+|++|+.|+.+++||...
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecc
Confidence 445788899999999999 99999999999999999999998885 88999998884 68999999999999999886
Q ss_pred Ce--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 382 KR--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 382 ~~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.. +..+..|...+..+.++|+|+++++++.||.+++|+..........+. ....+...|.+++|+|.+..+++++
T Consensus 219 ~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~---~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE---EECCCSSCEEEEEECTTCTTEEEEE
T ss_pred cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee---eecccCCceeeeeeCCCcccEEEEE
Confidence 44 345678899999999999999999999999999999987664332111 1233458899999999887777765
Q ss_pred --eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEcc
Q 005956 460 --SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFS 534 (667)
Q Consensus 460 --s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~ 534 (667)
+.|+.|++||+.+........ +...+.++.|+|+++.|++++ .|+.|+|||+.+++..... .+...+.+++|+|
T Consensus 296 ~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp 374 (420)
T 4gga_A 296 GGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374 (420)
T ss_dssp ECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred eecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 479999999998665544443 456789999999999998875 7899999999998765443 3345667789999
Q ss_pred CCcEEEEecC
Q 005956 535 EGVSVAVQWP 544 (667)
Q Consensus 535 dg~~lav~w~ 544 (667)
||.+||.+..
T Consensus 375 dg~~l~S~s~ 384 (420)
T 4gga_A 375 DGATVASAAA 384 (420)
T ss_dssp TSSCEEEEET
T ss_pred CCCEEEEEec
Confidence 9998887654
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-27 Score=261.95 Aligned_cols=311 Identities=11% Similarity=-0.011 Sum_probs=212.6
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCc---eeeeeeCCCCCcccc----CCCCeEEecccCC--CC----cee
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVA---ASCKSFTDDGGFGSN----AKEGKIKFGKKKS--SH----VPV 288 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~----~~~ 288 (667)
..+|.+++|+|||++|+++ .++.|++||+.++. ............... ............. .. ...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 47799999998876 322221111100000 0000000000000 00 000
Q ss_pred ecCCCcccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecC--CCeEeEEe---eCCCcEEEEEEeeCC
Q 005956 289 VIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVG--CNQCLNVF---DHHNYVTCVQFNPID 361 (667)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~--~~~~~~~~---~h~~~V~~l~f~p~d 361 (667)
........ ...+.....+|...|.+++|+|++ +| ++++.|++|+|||+. +++++..+ .|...|.+++|+| +
T Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~ 160 (450)
T 2vdu_B 83 SIKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-D 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-T
T ss_pred cccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-C
Confidence 00000000 011223345788899999999999 64 899999999999999 88887776 4778999999999 9
Q ss_pred CCEEEEEecCCeEEEEecCCCeEE-----EecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeec
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVV-----DWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~-----~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~ 433 (667)
+++|++|+.++.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+.......
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---- 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW---- 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE----
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee----
Confidence 999999999999999999887654 45668889999999999 999999999999999999877654321
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeC-----------------------CCCCCeEE
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGL-----------------------PKSGSQMS 488 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-----------------------~~~~~v~~ 488 (667)
...|...|++++|+ ++ .+|++++.|+.|++||+... ...+... .....+.+
T Consensus 237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 12345889999999 75 89999999999999998753 3333321 23457899
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEc--CCC---CccccccccCccceeEEccCCcEEEEec
Q 005956 489 ASFTTTGKHIISIG-DDCRVYVWNY--DEL---CFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 489 v~~spdg~~l~sgs-~Dg~I~iWd~--~~~---~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
++|+|++++|++++ .|+.|+||++ ..+ ...........+..+.|+|++.++++..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECC
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEec
Confidence 99999999999999 8999999999 443 2222222225566778999655555443
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=7.7e-27 Score=241.09 Aligned_cols=268 Identities=16% Similarity=0.223 Sum_probs=212.9
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
+++|+||+++ +||+|. |++|+|||+.++... ....
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------------------------~~~~ 62 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------------------------QLLQ 62 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------------------------EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------------------------EEEE
Confidence 4679999986 777765 899999999874321 1223
Q ss_pred eeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
+.+|...|++++|+|++ +|++|+.|++|++||+.+++++..+. |...+.++.+ ++.++++++.++.+++|+....
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCC
Confidence 45788899999999999 99999999999999999999998885 8888887666 5689999999999999998875
Q ss_pred e--EEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE--E
Q 005956 383 R--VVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM--I 458 (667)
Q Consensus 383 ~--~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~--~ 458 (667)
. ......|...+..+.+.++++++++++.||.|++||+++.+....... ....+...|..+.++|++...+. +
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ 216 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ---TFTQHQGAVKAVAWCPWQSNVLATGG 216 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE---EECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee---eecccCCceEEEEecCCCCcEEEEEe
Confidence 4 335678889999999999999999999999999999987665433111 12234578999999998766554 4
Q ss_pred EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCccccc-cccCccceeEEccC
Q 005956 459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG--DDCRVYVWNYDELCFPSSK-QKNSVRSCEHFFSE 535 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs~d 535 (667)
++.++.|++||.......... .+...+..+.|+|+++++++++ .|+.|+|||+.+++..... .+...+.+++|+||
T Consensus 217 ~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 217 GTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp CTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred cCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 567889999998754443333 2677899999999999988765 7999999999998765443 34456777899999
Q ss_pred CcEEEEecC
Q 005956 536 GVSVAVQWP 544 (667)
Q Consensus 536 g~~lav~w~ 544 (667)
|.+||.+..
T Consensus 296 g~~l~S~s~ 304 (318)
T 4ggc_A 296 GATVASAAA 304 (318)
T ss_dssp SSCEEEEET
T ss_pred CCEEEEEec
Confidence 998887654
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=2.6e-27 Score=257.56 Aligned_cols=232 Identities=21% Similarity=0.334 Sum_probs=197.4
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
.+|...|+++.| ++++|++|+.||.|+|||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~--------------------------------------------- 162 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT--------------------------------------------- 162 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSS---------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Confidence 467778999887 789999999999999999986
Q ss_pred CCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
.+.+..+.+|...|.+++| ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++ +++++|+.|+.|++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~v 237 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAV 237 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEE
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEE
Confidence 2446778899999999999 45 99999999999999999999988885 889999999964 69999999999999
Q ss_pred EecCCCeEE----EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 377 WGVCEKRVV----DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 377 wdl~~~~~~----~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
||+.++... ....|...|.+++| +++++++|+.||.|++||+++...... + ..|...|.++.|.+
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~-~------~~~~~~v~~~~~~~-- 306 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT-L------NGHKRGIACLQYRD-- 306 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-E------ECCSSCEEEEEEET--
T ss_pred EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-E------cCCCCcEEEEEeCC--
Confidence 999887643 45678889999998 788999999999999999998765432 2 22357899999953
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.++++++.||.|++||+.+.........|...|.+++| ++.+|++|+.||.|++||+.++.
T Consensus 307 -~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 307 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp -TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred -CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 59999999999999998865555455558899999998 78999999999999999997654
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.5e-27 Score=243.71 Aligned_cols=244 Identities=17% Similarity=0.280 Sum_probs=198.4
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+.+|...|++++|+|+|++||+|+.||+|+||++.+
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~------------------------------------------- 98 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ------------------------------------------- 98 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------------------------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC-------------------------------------------
Confidence 3457899999999999999999999999999999986
Q ss_pred ccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.+.+..+.+|...+.++.+.+ ..+++++.++.+++|+..... .+..+ .|...+.++.|.+ ++++|++++.|++|
T Consensus 99 --~~~~~~~~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i 174 (318)
T 4ggc_A 99 --QKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV 174 (318)
T ss_dssp --TEEEEEEECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --ceeEEEecCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcce
Confidence 344677889999888877653 389999999999999998764 33333 5899999999999 99999999999999
Q ss_pred EEEecCCCeE-----EEecccCCceEEEEEeeCCCEE---EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 375 RIWGVCEKRV-----VDWADVRDVISAICYIPDGKGF---IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 375 ~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l---~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
++||+.+++. .....+...|.+++++|++..+ ++++.++.|++||.......... .+...+..+
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------~~~~~v~~~ 246 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------DAHSQVCSI 246 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--------ECSSCEEEE
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--------cceeeeeee
Confidence 9999987652 3355677889999999976543 34667899999999876553321 123679999
Q ss_pred EEccCCCeEEEEE-eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 447 QFSRDESQRIMIT-SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 447 ~~sp~g~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
.|+|++..+++++ +.|+.|+|||+.+.........|...|++++|+|+|++||||+.||+|+|||+.+.
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999974444333 37999999998865555555558999999999999999999999999999998764
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.7e-27 Score=250.48 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=179.0
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+++.+|.+.|++++|+|||++||+|+.|+ ++||++.+...
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--------------------------------------- 52 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--------------------------------------- 52 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------------------------
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------------------------
Confidence 34578999999999999999999998876 78999875211
Q ss_pred cccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
... .+...+..+++.+++ .+++++.|++|+|||+.+++++..+.+...|.+++|++ + .++++ .|+.
T Consensus 53 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~ 120 (355)
T 3vu4_A 53 ------IMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDV 120 (355)
T ss_dssp ------EEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTE
T ss_pred ------eee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCE
Confidence 111 111246677777766 44678889999999999999999999999999999987 3 34444 4889
Q ss_pred EEEEecCCC-eEEEecccCCceEEEEEeeCCCEEEE--EecCCcEEEEEecCCcceee--------eEee-ccccCcCCC
Q 005956 374 VRIWGVCEK-RVVDWADVRDVISAICYIPDGKGFIV--GSITGTCHFYKASGNDLKLE--------KVDF-HDRKKTSGN 441 (667)
Q Consensus 374 v~iwdl~~~-~~~~~~~~~~~v~~v~~spdg~~l~~--gs~dg~i~l~d~~~~~~~~~--------~~~~-~~~~~~~~~ 441 (667)
|++||+.++ +.+..... ....+++++ ..+++ |+.+|.|++||+.+...... .+.. ......|..
T Consensus 121 i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~ 196 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN 196 (355)
T ss_dssp EEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred EEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence 999999987 54432222 445566777 56666 58899999999987541100 0000 111334568
Q ss_pred CeEEEEEccCCCeEEEEEeCCCc-EEEEECCcceeeEEeC-C-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 442 KITGIQFSRDESQRIMITSEDSK-LRILDGVDVIHKFKGL-P-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.|++++|+|+| .+|++++.|++ |+|||+.+........ + |...|.+++|+|+|++|++++.|+.|+|||+..+.
T Consensus 197 ~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 197 PIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred ceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 99999999996 89999999998 9999988544433333 2 78999999999999999999999999999997653
No 100
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.8e-28 Score=252.66 Aligned_cols=239 Identities=18% Similarity=0.208 Sum_probs=183.2
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe--EeEEe-eCCCcEEEEEEee-CCCCEEEEEecCCeEEEE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ--CLNVF-DHHNYVTCVQFNP-IDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~--~~~~~-~h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~iw 377 (667)
..+.+|.+.|++++|+|++ +|++|+.|++|+|||+.++. ++..+ .|...|++++|+| .++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3456899999999999999 99999999999999998875 34445 4999999999976 248899999999999999
Q ss_pred ecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 378 GVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 378 dl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|+.+++ ...+..|...|++++|+|+ |.+|++|+.||.|++||++...... .......|...|.+++|+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE----VKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----ECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----eeeeeccccCCcceEEEcccc
Confidence 999863 3346678899999999998 7899999999999999998653211 111133456789999999973
Q ss_pred ----------------CeEEEEEeCCCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 005956 453 ----------------SQRIMITSEDSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 509 (667)
Q Consensus 453 ----------------~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~i 509 (667)
..+|++++.|+.|++||+... ........|...|.+++|+|++ .+|++++.|++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 258999999999999997632 2222334588999999999987 89999999999999
Q ss_pred EEcCCCCc-----cccccccCccceeEEccCCcEEEEecCC
Q 005956 510 WNYDELCF-----PSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 510 Wd~~~~~~-----~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
|++.+... .........+..++|+|+|.+||++..+
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99986321 1111223455667899999888876543
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.2e-27 Score=260.22 Aligned_cols=244 Identities=23% Similarity=0.434 Sum_probs=196.8
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
....+.+.+|.+.|++++| ++++|++|+.||+|+|||+.++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~------------------------------------- 203 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG------------------------------------- 203 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC-------------------------------------
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-------------------------------------
Confidence 3455678899999999999 7889999999999999999863
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEe---EEe-eCCCcEEEEEEeeCCCCEEEE
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCL---NVF-DHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~---~~~-~h~~~V~~l~f~p~d~~~l~s 367 (667)
+.+..+.+|...|.+++|++ +.|++|+.|++|++||+.++... ..+ .|...|.+++| +++++++
T Consensus 204 --------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s 271 (435)
T 1p22_A 204 --------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVS 271 (435)
T ss_dssp --------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEE
T ss_pred --------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEE
Confidence 44677789999999999974 49999999999999999987655 333 48899999999 5789999
Q ss_pred EecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 368 GSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
|+.|+.|++||+.+++.+. +..|...|.++++ +++.+++|+.||.|++||++++..... ...|...|+++
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~~ 342 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-------LEGHEELVRCI 342 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-------ECCCSSCEEEE
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE-------EeCCcCcEEEE
Confidence 9999999999999988765 5668889999988 478999999999999999998765432 22345789999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+| + +.+|++++.||.|++||+.... .......|...|.+++| ++++|++|+.||.|+|||+.+...
T Consensus 343 ~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 343 RF--D-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EC--C-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred Ee--c-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 99 3 3689999999999999965321 33333458889999999 788999999999999999988754
Q ss_pred ccc
Q 005956 518 PSS 520 (667)
Q Consensus 518 ~~~ 520 (667)
...
T Consensus 418 ~~~ 420 (435)
T 1p22_A 418 AQA 420 (435)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-27 Score=249.82 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=194.9
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEee-CCCcEEEEEEeeCC--CCEEEEEecCCe
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGK 373 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~d--~~~l~sgs~Dg~ 373 (667)
+++..+.+|...|++++|+|++ +|++++.|++|+|||+. +++.+..+. |...|++++|+| + +++|++|+.|+.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 3467788999999999999999 99999999999999998 556666664 999999999987 5 899999999999
Q ss_pred EEEEecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 374 VRIWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 374 v~iwdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
|++||+.+++ ......|...|.+++|+|+ +++|++++.||.|++||+......... .+ ..+...|++++|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~----~~~~~~v~~~~~ 155 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASW 155 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EE----ECCTTCEEEEEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-Ee----cCCCCceEEEEE
Confidence 9999999985 3346668899999999999 999999999999999999877543321 11 223578999999
Q ss_pred ccC------------CCeEEEEEeCCCcEEEEECCcc----eeeEEeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEE
Q 005956 449 SRD------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYV 509 (667)
Q Consensus 449 sp~------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~Dg~I~i 509 (667)
+|. ++.++++++.|+.|++||+... ........|...|.+++|+|+ +++|++++.||.|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 994 2489999999999999997532 122233458899999999999 899999999999999
Q ss_pred EEcCCCCcc----cc--ccccCccceeEEccCCcEEEEecCC
Q 005956 510 WNYDELCFP----SS--KQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 510 Wd~~~~~~~----~~--~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
||+.++... .. .........+.|+|+|.+|+++...
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 999987421 11 1244556778999999999987653
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-28 Score=261.09 Aligned_cols=252 Identities=10% Similarity=0.130 Sum_probs=196.9
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcC---CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT---SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
+|.+.|++|+|+|++++|++|+.||.|+|||+. ++......
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------------------------------ 152 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFL------------------------------------ 152 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEE------------------------------------
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecc------------------------------------
Confidence 599999999999999999999999999999995 22111000
Q ss_pred ccCCcceeee--c--cccceEEEE--ecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEE
Q 005956 297 IEESPLQELH--G--HKGDVLDLA--WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 297 ~~~~~~~~l~--g--h~~~V~~l~--~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~ 366 (667)
....+..+. . +...+.++. +++++ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|+
T Consensus 153 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~ 230 (437)
T 3gre_A 153 -NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLI 230 (437)
T ss_dssp -EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEE
T ss_pred -ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEE
Confidence 001122221 1 566778887 56778 99999999999999999999988885 788999999999 899999
Q ss_pred EEecCCeEEEEecCCCeEEEec--ccCCceEEEEEee----CCCEEEEEecCCcEEEEEecCCcceeeeEeecc------
Q 005956 367 SGSIDGKVRIWGVCEKRVVDWA--DVRDVISAICYIP----DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD------ 434 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~~~--~~~~~v~~v~~sp----dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~------ 434 (667)
+|+.||.|++||+++++.+... .+...|++++|+| ++.+|++|+.||.|++||+++............
T Consensus 231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 9999999999999999887633 6777899996654 678999999999999999987765433211000
Q ss_pred -----------cc--CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc--eeeEEeC-------------------
Q 005956 435 -----------RK--KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV--IHKFKGL------------------- 480 (667)
Q Consensus 435 -----------~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~--~~~~~~~------------------- 480 (667)
.. ..+...|++++|+ ++ .+|++++.|+.|++||+.+. ...+.++
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTML 388 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEE
T ss_pred ecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEE
Confidence 00 1155779999999 54 89999999999999998743 2333321
Q ss_pred ----------------CCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005956 481 ----------------PKSGSQMSASFTTT--GKHIISIGDDCRVYVWN 511 (667)
Q Consensus 481 ----------------~~~~~v~~v~~spd--g~~l~sgs~Dg~I~iWd 511 (667)
.|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 389 ~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 389 LRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 17889999999988 78999999999999995
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-28 Score=254.15 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=180.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeec
Q 005956 228 LKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHG 307 (667)
Q Consensus 228 v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 307 (667)
..+.+++.+|++|+.||+|++||+.++. .+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~---------------------------------------------~~~~~~- 75 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSK---------------------------------------------TITTIT- 75 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSS---------------------------------------------CEEEEE-
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCc---------------------------------------------EEEEEe-
Confidence 3455688999999999999999998632 233333
Q ss_pred cccceEEEEecCCCeEEEEeCCCcEEEEecC---------CCeEeEEee--CCCcEEEEEEee-CCCCEEEEEecCCeEE
Q 005956 308 HKGDVLDLAWSNSNYLLSCSMDKTVRMWQVG---------CNQCLNVFD--HHNYVTCVQFNP-IDDNYFISGSIDGKVR 375 (667)
Q Consensus 308 h~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~---------~~~~~~~~~--h~~~V~~l~f~p-~d~~~l~sgs~Dg~v~ 375 (667)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.+++|+| .++++|++++.|++|+
T Consensus 76 -~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 76 -TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp -EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred -cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 456778888887 9999999999999665 555555543 668899999998 3578999999999999
Q ss_pred EEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 376 IWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 376 iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
+||+.+++..... .+...+++++|+|+|.+|++|+.||.|++||+++.......+.. .|..+|++++|+|+|
T Consensus 153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~fs~~g- 226 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----DEEAKIKEVKFADNG- 226 (343)
T ss_dssp EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----CTTSCEEEEEECTTS-
T ss_pred EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----cCCCCEEEEEEeCCC-
Confidence 9999998876533 44557999999999999999999999999999987764222221 246899999999996
Q ss_pred eEEEEEeCCCcEEEEECCcceee--EEeC-CCCCCe--EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 005956 454 QRIMITSEDSKLRILDGVDVIHK--FKGL-PKSGSQ--MSASFTTTGKHIISIGD-DCRVYVWNYDELCF 517 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~--~~~~-~~~~~v--~~v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~ 517 (667)
.+|++++ ++.|++||+++.... +... .+...+ .+++|+|+|++|++++. |+.|+||++.....
T Consensus 227 ~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 227 YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 7888888 559999998754322 2210 012222 46999999999999998 99999999976643
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2.6e-27 Score=247.53 Aligned_cols=243 Identities=13% Similarity=0.088 Sum_probs=200.3
Q ss_pred eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEc-CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHV-TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
..+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+.
T Consensus 50 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------------------------------------- 90 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------------------------------------- 90 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---------------------------------------
T ss_pred eeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---------------------------------------
Confidence 34458999999999999999 9999999999999999 752
Q ss_pred cccccCCcceeeec--cccceEEEEecCCC-eEEEEeCCCcEEEEecCC---------CeEeEEeeCCCcEEEEEEeeCC
Q 005956 294 VFQIEESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQFNPID 361 (667)
Q Consensus 294 ~~~~~~~~~~~l~g--h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~d 361 (667)
....+.+ |...|.+++|+| + .|++++.|+.|++||+.+ ++++..+.|...|.+++|+| +
T Consensus 91 -------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 161 (342)
T 1yfq_A 91 -------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-S 161 (342)
T ss_dssp -------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-S
T ss_pred -------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-C
Confidence 2355667 999999999999 6 999999999999999988 77777778999999999998 5
Q ss_pred CCEEEEEecCCeEEEEecCC-CeE---EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCC-----cceeeeEe
Q 005956 362 DNYFISGSIDGKVRIWGVCE-KRV---VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGN-----DLKLEKVD 431 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~-~~~---~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~-----~~~~~~~~ 431 (667)
+ +++++.|+.|++||+++ +.. .....+...+.+++|+| +++++++++.+|.+++|++... ......+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 4 99999999999999988 442 24556788899999999 9999999999999999999876 12222222
Q ss_pred eccc---cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCCEEEEEeCCCc-
Q 005956 432 FHDR---KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGKHIISIGDDCR- 506 (667)
Q Consensus 432 ~~~~---~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~Dg~- 506 (667)
.+.. ...+...|++++|+|++ .+|++++.||.|++||+.+.........| ...|.+++ |++++|++++.||.
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred cccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 2211 01234589999999996 78999999999999999866555555556 88999999 99999999999998
Q ss_pred EEEEE
Q 005956 507 VYVWN 511 (667)
Q Consensus 507 I~iWd 511 (667)
.+.|.
T Consensus 317 ~~~~~ 321 (342)
T 1yfq_A 317 KTNAA 321 (342)
T ss_dssp HHCSS
T ss_pred ccccc
Confidence 55444
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.3e-28 Score=260.33 Aligned_cols=255 Identities=15% Similarity=0.149 Sum_probs=176.5
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
...|.+.+....+++++.+||+|+.|++|+|||+.++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------------------------------------- 125 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIIT--------------------------------------- 125 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEE---------------------------------------
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccce---------------------------------------
Confidence 34577777777888899999999999999999998643221
Q ss_pred cCCcceeeeccccceEEEEecC--------CC-eEEEEeCCCcEEEEecCCCeEe-EEeeCCCcEEEEEEeeCCCCEEEE
Q 005956 298 EESPLQELHGHKGDVLDLAWSN--------SN-YLLSCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~--------~~-~l~s~s~Dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~d~~~l~s 367 (667)
..++..+.||.+.|++++|+| ++ +|++++.|++|+|||+.++.++ ..+.|..+|.+++|+|.+.++|++
T Consensus 126 -~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 126 -QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV 204 (393)
T ss_dssp -EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred -eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe
Confidence 123455789999999999987 66 8999999999999999877654 455799999999999944468999
Q ss_pred EecCCeEEEEecCCCeEEE--------------------------ecccCCceEEEEEe-eCCCEEEEEecCCcEEEEEe
Q 005956 368 GSIDGKVRIWGVCEKRVVD--------------------------WADVRDVISAICYI-PDGKGFIVGSITGTCHFYKA 420 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~--------------------------~~~~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~ 420 (667)
|+.|++|++||+.+++... ...+...+.++.|+ |+|+.|++++.|+.+++||+
T Consensus 205 ~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~ 284 (393)
T 4gq1_A 205 GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL 284 (393)
T ss_dssp EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence 9999999999998765321 12455678889987 79999999999999999999
Q ss_pred cCCcceeeeEeecc-----------ccCcCCCCeEEEEEcc-CCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEE
Q 005956 421 SGNDLKLEKVDFHD-----------RKKTSGNKITGIQFSR-DESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMS 488 (667)
Q Consensus 421 ~~~~~~~~~~~~~~-----------~~~~~~~~I~~l~~sp-~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 488 (667)
.............. .............|+| .+..++++++.||.|+|||............|...|.+
T Consensus 285 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s 364 (393)
T 4gq1_A 285 FANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD 364 (393)
T ss_dssp -------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred ccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence 76543322100000 0000111222333444 34457778889999999998754433333347889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 489 ASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 489 v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
++|+|||++||+++++| +.+|.+.
T Consensus 365 vafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 365 FCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999999766 6666654
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=6.1e-27 Score=254.39 Aligned_cols=288 Identities=14% Similarity=0.298 Sum_probs=197.9
Q ss_pred cceeecccc------------ccEEEEEEcCCC--CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEec
Q 005956 214 TSQEIQAHK------------GCIWTLKFSPDG--RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFG 279 (667)
Q Consensus 214 ~~~~l~~H~------------~~I~~v~fspdg--~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (667)
....+++|. +.|++++|+|++ .+|++++.||+|+||++.+.......+..... .+.+...
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~------~g~~~~~ 146 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEE------DGRYRDP 146 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------------C
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCc------cccccCc
Confidence 456677898 889999999998 89999999999999999864432221111110 0000000
Q ss_pred cc-CCCCceeecCCCcccccCCcceee-eccccceEEEEecCCC-eEEEEeCCCcEEEEecC-CCeEeEEe--------e
Q 005956 280 KK-KSSHVPVVIPDEVFQIEESPLQEL-HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVF--------D 347 (667)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~~~~~~~~~l-~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~-~~~~~~~~--------~ 347 (667)
.. .........+. .+.....+...+ .+|...|.+++|+|++ +|++| .|++|++||+. .++++..+ .
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 224 (447)
T 3dw8_B 147 TTVTTLRVPVFRPM-DLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE 224 (447)
T ss_dssp CCCCSCCCCEEEEE-EEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGG
T ss_pred ccccceEeccccch-heeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccc
Confidence 00 00000000000 001111223333 6899999999999999 88888 89999999999 45555543 4
Q ss_pred CCCcEEEEEEeeCCC-CEEEEEecCCeEEEEecCCCeE-----EEecccCC------------ceEEEEEeeCCCEEEEE
Q 005956 348 HHNYVTCVQFNPIDD-NYFISGSIDGKVRIWGVCEKRV-----VDWADVRD------------VISAICYIPDGKGFIVG 409 (667)
Q Consensus 348 h~~~V~~l~f~p~d~-~~l~sgs~Dg~v~iwdl~~~~~-----~~~~~~~~------------~v~~v~~spdg~~l~~g 409 (667)
|...|++++|+| ++ ++|++|+.|+.|++||+++++. ..+..+.. .|.+++|+|+|++|+++
T Consensus 225 ~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 225 LTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp CCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred cCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 889999999999 76 9999999999999999998875 34455554 89999999999999999
Q ss_pred ecCCcEEEEEecCCcceeeeEeeccccCc------CCC---CeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEe
Q 005956 410 SITGTCHFYKASGNDLKLEKVDFHDRKKT------SGN---KITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKG 479 (667)
Q Consensus 410 s~dg~i~l~d~~~~~~~~~~~~~~~~~~~------~~~---~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~ 479 (667)
+. |.|++||++........+..+..... ... .+..++|+|++ .+|++++.||.|++||+..... .+..
T Consensus 304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~ 381 (447)
T 3dw8_B 304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDITLEA 381 (447)
T ss_dssp ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEEEEC
T ss_pred eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCcceeeee
Confidence 99 99999999863333333332221000 001 13459999996 7899999999999999874322 1111
Q ss_pred -------------------------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 480 -------------------------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 480 -------------------------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
......|..++|+|++.+||+++.++ +++|.-+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 382 SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 12345688999999999999998765 8888743
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=6.7e-27 Score=250.02 Aligned_cols=329 Identities=15% Similarity=0.163 Sum_probs=213.7
Q ss_pred CCcceeeeccccceEEEEecC-CC-eEEEEeCCCcEEEEecCCCeEeEEee--------------CCCcEEEEEEeeCCC
Q 005956 299 ESPLQELHGHKGDVLDLAWSN-SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--------------HHNYVTCVQFNPIDD 362 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~-~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--------------h~~~V~~l~f~p~d~ 362 (667)
.+....+.+|.+.|++++|+| ++ +|++++.||+|++||+.++.....+. |...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345667789999999999999 88 99999999999999999876554442 889999999999777
Q ss_pred CEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeC---CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 363 NYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
.+|++++.|+.|++||+.+++......+...+.+++++|. +.++++++.+|.|++||+++...... ...|
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------~~~~ 185 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI-------LQGH 185 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-------ECCC
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-------ecCC
Confidence 8999999999999999999998887788899999999994 45999999999999999987655432 2234
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce---eeEE-------------eCCCCCCeEEEEEcCCCCEEEEEeC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---HKFK-------------GLPKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---~~~~-------------~~~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
...|++++|+|++..++++++.||.|++||+.... ..+. ...|...|.+++|+|++++|++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 58899999999975579999999999999986432 1111 0347889999999999999999999
Q ss_pred CCcEEEEEcCCCCccccccc-------cCccceeEEccCCcEEEEecCCCCcccccccCCCCCCcCccCcCCCCCCcccC
Q 005956 504 DCRVYVWNYDELCFPSSKQK-------NSVRSCEHFFSEGVSVAVQWPGIGTEQKSLCSSSLRDCSQKWDNLETAPWIRD 576 (667)
Q Consensus 504 Dg~I~iWd~~~~~~~~~~~~-------~~~~~~~~fs~dg~~lav~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 576 (667)
||.|++||+.++........ ..........+.+.+++.+... .+.++....... -..+..+...+.
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~----~~~~~~~~~~v~ 338 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ----ITMLKGHYKTVD 338 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCCE----EEEECCCSSCEE
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC---EEEEEECcCCcc----eeeeccCCCeEE
Confidence 99999999998765432211 1111111222233344433322 122221111100 011223334456
Q ss_pred CCcccCCCCCCCCCCCCCC-CCCCCCcCCCCCCcccCCCCCCChhhHHHhhhhccCCCCcccCCCCCceEEEecCCCCeE
Q 005956 577 SERFSLGSWFSNDGPCRGS-ATWPAEKLPLWDVTIDSDGYCQDPQQQRLQQQCLNNVDDVRAISATWGLVIVTAGCDGMI 655 (667)
Q Consensus 577 ~~~fS~~~~~~~~g~~~g~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vivta~~~G~i 655 (667)
...|+|++.+++.++..|. ..|..+..... +.. .. . ... ....+.......+++.+|.|
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~-~~--~---------~~~------~~~~~~~~~~~~~~~~~~~~ 398 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPV--PDD-DE--T---------TTK------SQLNPAFEDAWSSSDEEGGT 398 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCCcc--CCC-Cc--e---------Eec------cccccccceeecccCccCce
Confidence 6789999999998887776 45755432211 000 00 0 000 12223344556789999999
Q ss_pred eeeeec
Q 005956 656 KTFHNY 661 (667)
Q Consensus 656 r~f~~~ 661 (667)
++|.|.
T Consensus 399 ~~W~~~ 404 (408)
T 4a11_B 399 SAWSHP 404 (408)
T ss_dssp ------
T ss_pred eecCCc
Confidence 999874
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=5.3e-26 Score=247.81 Aligned_cols=273 Identities=16% Similarity=0.290 Sum_probs=214.9
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCC----------CccccCCCCeEEeccc
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDG----------GFGSNAKEGKIKFGKK 281 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 281 (667)
....+.+.+|.+.|++++|+ +.+|++|+.||+|++||+.++........... .++....++.+.+++.
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence 34456788999999999998 56999999999999999987654333221111 2223334444444433
Q ss_pred CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEee
Q 005956 282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNP 359 (667)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 359 (667)
. ..+.+..+.+|...|.+++| ++ +|++++.|+.|++||+.+++++..+. |...|.++.|
T Consensus 227 ~---------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 287 (445)
T 2ovr_B 227 E---------------TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 287 (445)
T ss_dssp S---------------SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--
T ss_pred C---------------CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--
Confidence 2 23456788899999999999 45 89999999999999999999998886 8899999999
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeEEE-ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRVVD-WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
++.++++|+.|+.|++||+.+++.+. +..+...+.++.+ +++.+++|+.||.|++||+++++.... + .. ...
T Consensus 288 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-~--~~-~~~ 360 (445)
T 2ovr_B 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-L--QG-PNK 360 (445)
T ss_dssp -CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-E--CS-TTS
T ss_pred -CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-E--cc-CCC
Confidence 67899999999999999999988765 5667777887766 577999999999999999987665332 1 11 223
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEe-----CCCCCCeEEEEEcCCCCEEEEEeCCCc----EEE
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKG-----LPKSGSQMSASFTTTGKHIISIGDDCR----VYV 509 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~v~~spdg~~l~sgs~Dg~----I~i 509 (667)
+...|++++|++ .+|++++.||.|++||+.+....... ..+...|.+++|+|++.+|++|+.||. |.|
T Consensus 361 ~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 361 HQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp CSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred CCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence 568899999964 58999999999999998754332222 347788999999999999999999998 999
Q ss_pred EEcCCC
Q 005956 510 WNYDEL 515 (667)
Q Consensus 510 Wd~~~~ 515 (667)
||+...
T Consensus 438 ~df~~~ 443 (445)
T 2ovr_B 438 LDFDVD 443 (445)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999764
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.9e-26 Score=246.46 Aligned_cols=280 Identities=12% Similarity=0.051 Sum_probs=221.9
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+.+..|. .+.+++|+|++.++++++.|+.|++||+.++.....
T Consensus 117 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------------------------ 159 (433)
T 3bws_A 117 SRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------------------------------ 159 (433)
T ss_dssp EEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------------------------------
T ss_pred EEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------------------------------
Confidence 3444443 456999999888888888999999999986433210
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEE-EEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFI-SGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~-sgs~Dg 372 (667)
.+...+.+|...|.+++|++++ ++++++.|+.|++||+.+++.+..+. |...+.+++|+| ++++++ +++.|+
T Consensus 160 ----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 234 (433)
T 3bws_A 160 ----SPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISE 234 (433)
T ss_dssp ----CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTT
T ss_pred ----cCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCC
Confidence 1122456899999999999999 88899999999999999999888875 788999999999 787775 555799
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEe--------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGS--------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs--------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
.|++||+.+++.+........+.+++|+|+|+.+++++ .||.|++||+.+.+.... +.. ...+.
T Consensus 235 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~-------~~~~~ 306 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGP-------PGNKR 306 (433)
T ss_dssp EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEE-------EECEE
T ss_pred cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-ccC-------CCCcc
Confidence 99999999999887777777899999999999999988 488999999987754332 111 24688
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC---------------CCcEEE
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD---------------DCRVYV 509 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---------------Dg~I~i 509 (667)
+++|+|++..++++++.++.|++||+.......... +...+.+++|+|+|++|++++. ||.|++
T Consensus 307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~ 385 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV 385 (433)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEE
Confidence 999999976677778999999999987544333322 5677999999999999998876 579999
Q ss_pred EEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
||+.+++.............+.|+|+|..|+++...+
T Consensus 386 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 386 IDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp EETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred EECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence 9999887655444444566789999999998876544
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.5e-26 Score=240.63 Aligned_cols=249 Identities=13% Similarity=0.217 Sum_probs=200.6
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+.+..
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------------------------------- 119 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ---------------------------------------- 119 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----------------------------------------
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC----------------------------------------
Confidence 5677899999999999999999999999999999998632
Q ss_pred cccCCcceeeeccccceEEEEe--cCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAW--SNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~--s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
...+.+|...|.+++| ++++ +|++++.|++|++||+.+++++..+.....+.++.+.+ ..+++++.++
T Consensus 120 ------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 190 (368)
T 3mmy_A 120 ------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAER 190 (368)
T ss_dssp ------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGG
T ss_pred ------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCC
Confidence 2335679999999999 8888 89999999999999999999999998778888888864 5888899999
Q ss_pred eEEEEecCCCeEEE---ecccCCceEEEEEeeCCCE----EEEEecCCcEEEEEecCCcceeeeEeecccc--------C
Q 005956 373 KVRIWGVCEKRVVD---WADVRDVISAICYIPDGKG----FIVGSITGTCHFYKASGNDLKLEKVDFHDRK--------K 437 (667)
Q Consensus 373 ~v~iwdl~~~~~~~---~~~~~~~v~~v~~spdg~~----l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~--------~ 437 (667)
.+++|++....... .......+.++++.+++.. +++++.||.|++||++..........+..+. .
T Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270 (368)
T ss_dssp CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCC
T ss_pred cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccc
Confidence 99999998765432 2234556777887776655 9999999999999998764311111222211 1
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.+...|++++|+|++ .+|++++.||.|++||+.+.........|...|.+++|+|+|++|++++.|+..+.|++-+
T Consensus 271 ~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 271 QDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 122379999999996 8999999999999999987665555556889999999999999999999998665555443
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=1.5e-25 Score=233.15 Aligned_cols=213 Identities=13% Similarity=0.188 Sum_probs=175.2
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC----eEeEEe-eCCCcEEEEEEeeC-CCCEEEEEecCCeEE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN----QCLNVF-DHHNYVTCVQFNPI-DDNYFISGSIDGKVR 375 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~----~~~~~~-~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~ 375 (667)
..+.+|.+.|++++|+|++ +|++++.||+|++||+.++ +.+..+ .|...|++++|+|. ++++|++|+.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4567999999999999999 9999999999999999876 355555 49999999999984 489999999999999
Q ss_pred EEecCCCe----------EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceee-eEe-----eccccC
Q 005956 376 IWGVCEKR----------VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLE-KVD-----FHDRKK 437 (667)
Q Consensus 376 iwdl~~~~----------~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~-~~~-----~~~~~~ 437 (667)
+||+.+++ ......|...|.+++|+|+ +++|++++.||.|++||+++...... ... ......
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998862 3456678999999999999 99999999999999999987664332 110 111122
Q ss_pred cCCCCeEEEEEccC--CCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 005956 438 TSGNKITGIQFSRD--ESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTG----KHIISIGDDCRVYV 509 (667)
Q Consensus 438 ~~~~~I~~l~~sp~--g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg----~~l~sgs~Dg~I~i 509 (667)
.+...+.++.|+|+ +..++++++.++.+.+|+..... .......|...|.+++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 45678999999997 34799999999999888865432 233444588999999999998 89999999999999
Q ss_pred EEcCCC
Q 005956 510 WNYDEL 515 (667)
Q Consensus 510 Wd~~~~ 515 (667)
||+..+
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 999875
No 113
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=239.86 Aligned_cols=293 Identities=10% Similarity=0.140 Sum_probs=211.4
Q ss_pred ceeeeccccceEEEEecCCC-eE-EEEeC---CCcEEEEecCCCeEeEE--eeCCCcEEEEEEeeCC---CCEEEEEecC
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YL-LSCSM---DKTVRMWQVGCNQCLNV--FDHHNYVTCVQFNPID---DNYFISGSID 371 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l-~s~s~---Dg~I~iWd~~~~~~~~~--~~h~~~V~~l~f~p~d---~~~l~sgs~D 371 (667)
...+.+|...|.+++|+|++ .+ ++++. |++|+|||+.+++.... +.|...|.+++|+| + +++|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA-TSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT-CCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC-CCCCCceEEEecCC
Confidence 34557899999999999988 44 56665 99999999999876544 46999999999999 6 6999999999
Q ss_pred CeEEEEecCCCe--EEEecccCCceEEEEE------eeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 372 GKVRIWGVCEKR--VVDWADVRDVISAICY------IPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 372 g~v~iwdl~~~~--~~~~~~~~~~v~~v~~------spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
+.|++||+.+++ ...+..|...|.+++| +|+++.|++++.||.|++||+.+.......+.. +.......+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~v 167 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP--VQGENKRDC 167 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC--CTTSCCCCE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc--cCCCCCCce
Confidence 999999999876 4456788999999954 689999999999999999999987633332222 122224578
Q ss_pred EEEE----EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCC
Q 005956 444 TGIQ----FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 444 ~~l~----~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.+++ |+|++ .++++++.|+.|++||+........ ..+...+.+++|+| ++.+|++++.||.|++||+.++.
T Consensus 168 ~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 168 WTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 9998 67775 8999999999999999986554333 23788999999999 99999999999999999998765
Q ss_pred ccccc------cccCccceeEEccCCc-EEEEecCCCCcccccccCCCCCC---------------cCccCcCCCCCCcc
Q 005956 517 FPSSK------QKNSVRSCEHFFSEGV-SVAVQWPGIGTEQKSLCSSSLRD---------------CSQKWDNLETAPWI 574 (667)
Q Consensus 517 ~~~~~------~~~~~~~~~~fs~dg~-~lav~w~~~~~~~~~~~~~~~~~---------------~~~~w~~~~~~~~~ 574 (667)
..... .....+..+.|+|++. +++++..... ++++....... +......+..+...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG--LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE--EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc--EEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 43321 3455667789999998 6666544321 22211110000 00001112223334
Q ss_pred cCCCcccCCCCCCC-CCCCCCC-CCCCCC
Q 005956 575 RDSERFSLGSWFSN-DGPCRGS-ATWPAE 601 (667)
Q Consensus 575 ~~~~~fS~~~~~~~-~g~~~g~-~~w~~~ 601 (667)
.....|+|++.+++ .++..|. ..|.-.
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 55678999999887 5665554 446544
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-25 Score=243.06 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=193.0
Q ss_pred eeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
....+|.+.|++++|+|+|++| |+|+.||.|+|||+. ++
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-------------------------------------- 137 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-------------------------------------- 137 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------------------------------------
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------------------------------------
Confidence 3456899999999999999996 899999999999998 42
Q ss_pred CcccccCCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeE----Ee-eCCCcEEEEEEeeCC---
Q 005956 293 EVFQIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLN----VF-DHHNYVTCVQFNPID--- 361 (667)
Q Consensus 293 ~~~~~~~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~----~~-~h~~~V~~l~f~p~d--- 361 (667)
..+..+. .|...|.+++|+|++ +|++++.|+.|++|++.+++... .+ .|...|++++|+| +
T Consensus 138 -------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~ 209 (450)
T 2vdu_B 138 -------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDG 209 (450)
T ss_dssp -------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTS
T ss_pred -------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCC
Confidence 2344444 567899999999999 99999999999999998876553 33 4899999999999 8
Q ss_pred CCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc----
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR---- 435 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~---- 435 (667)
+++|++|+.|++|++||+.+++.+. ...|...|.+++|+ ++++|++|+.|+.|++||+.+++.... +.....
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~ 287 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPY 287 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGG
T ss_pred CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhh
Confidence 8899999999999999999887654 44788999999999 999999999999999999998765433 221100
Q ss_pred ---------------cCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEEC--Ccc---eeeEEeCCCCCCeEEEEEcCC
Q 005956 436 ---------------KKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDG--VDV---IHKFKGLPKSGSQMSASFTTT 494 (667)
Q Consensus 436 ---------------~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~~~~~v~~v~~spd 494 (667)
.......|.+++|+|++ .+|++++ .++.|+|||+ ... ........+ ..+.+++|+|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp CCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred hhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 00223579999999986 6777777 8999999998 322 222222224 78999999996
Q ss_pred CCEEEEEeC------CCcEEEEEcCC
Q 005956 495 GKHIISIGD------DCRVYVWNYDE 514 (667)
Q Consensus 495 g~~l~sgs~------Dg~I~iWd~~~ 514 (667)
+.++++++. +..|.||.+..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred cEEEEEecccCCCCCCcceEEEEEEc
Confidence 544444333 45688887754
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=6.8e-25 Score=234.11 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=195.9
Q ss_pred ceeeccccccEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYL-ASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~L-atgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.+.+..|. .+.+++|+|+|++| ++++.|+.|++||+.++.
T Consensus 25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------------------------------- 65 (391)
T 1l0q_A 25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------------------------------- 65 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------------------------------
T ss_pred EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------------------------------
Confidence 44556665 48999999999987 677799999999998632
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE-EEEec
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSI 370 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l-~sgs~ 370 (667)
.+..+..|. .+.+++|+|++ +|+ +++.++.|++||+.+++.+..+.+...+.+++|+| +++.+ ++++.
T Consensus 66 -------~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 136 (391)
T 1l0q_A 66 -------VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNG 136 (391)
T ss_dssp -------EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETT
T ss_pred -------EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCC
Confidence 234444444 89999999999 564 55577999999999999999998888899999999 88866 68888
Q ss_pred CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc
Q 005956 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS 449 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s 449 (667)
++.|++||+.+++..........+.+++|+|+|+.+ ++++.++.|++||+++...... +. +...+.+++|+
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~-------~~~~~~~~~~~ 208 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT-VK-------VEAAPSGIAVN 208 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EE-------CSSEEEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE-Ee-------cCCCccceEEC
Confidence 999999999999988766667778999999999988 5667889999999987754322 11 12578999999
Q ss_pred cCCCeEEEEEe---CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCccc
Q 005956 450 RDESQRIMITS---EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHI-ISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 450 p~g~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
|++ .+|++++ .++.|++||+.......... ....+.+++|+|+|++| ++++.|+.|++||+.+++...
T Consensus 209 ~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 209 PEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp TTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 997 5666666 78999999987544333332 23457899999999988 566889999999999876543
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=5e-26 Score=244.23 Aligned_cols=240 Identities=14% Similarity=0.107 Sum_probs=164.1
Q ss_pred eccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE--e----eCCCcEEEEEEee-------CCCCEEEEEecC
Q 005956 306 HGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV--F----DHHNYVTCVQFNP-------IDDNYFISGSID 371 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~--~----~h~~~V~~l~f~p-------~d~~~l~sgs~D 371 (667)
..|...+....+.+++ +|++++.|++|+|||+.++.+... + +|.+.|++++|+| .++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455555555566666 899999999999999998876543 2 3999999999987 267899999999
Q ss_pred CeEEEEecCCCe-EEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeec----------------
Q 005956 372 GKVRIWGVCEKR-VVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFH---------------- 433 (667)
Q Consensus 372 g~v~iwdl~~~~-~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~---------------- 433 (667)
++|+|||+.++. +.....+...+.+++|+|++ ++|++|+.||+|++||+++.+.........
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999998765 45677889999999999987 479999999999999998765433211000
Q ss_pred --cccCcCCCCeEEEEEc-cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCC------------------eEEEEEc
Q 005956 434 --DRKKTSGNKITGIQFS-RDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGS------------------QMSASFT 492 (667)
Q Consensus 434 --~~~~~~~~~I~~l~~s-p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~------------------v~~v~~s 492 (667)
.....+...+.++.|+ |+ +..|++++.|+.+++||+...........+... ...+.|+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~d-g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSD-GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTT-TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCC-CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 0112355778899987 56 489999999999999997532211111111111 2223343
Q ss_pred C--CCCEEEEEeCCCcEEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEecCCC
Q 005956 493 T--TGKHIISIGDDCRVYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 493 p--dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
| ++.++++|+.||.|+|||+.++..... ......+..++|+|||++||++..+.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 3 445778889999999999998866433 33345667789999999999987543
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.4e-24 Score=231.75 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=203.8
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccceEE
Q 005956 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLD 314 (667)
Q Consensus 235 ~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~ 314 (667)
.++++++.|+.|++||+.++ +.+..+.+|. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---------------------------------------------~~~~~~~~~~-~~~~ 36 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---------------------------------------------KVTATIPVGS-NPMG 36 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---------------------------------------------EEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCC---------------------------------------------eEEEEeecCC-Ccce
Confidence 47888999999999999863 2344555564 4899
Q ss_pred EEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEecCCeEEEEecCCCeEEEecccC
Q 005956 315 LAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGSIDGKVRIWGVCEKRVVDWADVR 391 (667)
Q Consensus 315 l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs~Dg~v~iwdl~~~~~~~~~~~~ 391 (667)
++|+|++ +| ++++.|++|++||+.+++++..+.+...+.+++|+| ++++|+ +++.++.|++||+.+++.+....+.
T Consensus 37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~ 115 (391)
T 1l0q_A 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (391)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence 9999999 55 677799999999999999999998777999999999 888775 4556799999999999988777777
Q ss_pred CceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 392 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 392 ~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
..+.+++|+|+|+.+ ++++.++.|++||+.+++.... +.. ...+..++|+|++..++++++.++.|++||+
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~-------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT-VSV-------GRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EEC-------CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-Eec-------CCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 889999999999987 6777899999999987765432 211 2567999999997555577888999999998
Q ss_pred CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCC
Q 005956 471 VDVIHKFKGLPKSGSQMSASFTTTGKHIISIG---DDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.......... +...+.+++|+|+|++|++++ .++.|++||+.+++.............+.|+|+|..++++...+
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC
Confidence 7654333332 456789999999999999988 68999999999886644433334456689999999887665444
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-25 Score=259.45 Aligned_cols=237 Identities=18% Similarity=0.220 Sum_probs=190.9
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEee-CCCcEEEEEEeeCC--CCEEEEEecCCeEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFD-HHNYVTCVQFNPID--DNYFISGSIDGKVR 375 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~d--~~~l~sgs~Dg~v~ 375 (667)
+..+.+|.+.|++++|+|++ +|++|+.||+|+|||+. +++.+..+. |...|++++|+| + +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEE
Confidence 34678999999999999999 99999999999999998 445666664 999999999998 6 89999999999999
Q ss_pred EEecCCCe---EEEecccCCceEEEEEeeC--CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 376 IWGVCEKR---VVDWADVRDVISAICYIPD--GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 376 iwdl~~~~---~~~~~~~~~~v~~v~~spd--g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+||+.+++ ......|...|++++|+|+ ++.+++|+.||.|++||+++....... .. ..+...|++++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~----~~~~~~v~~l~~~p 155 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-II----DAHAIGVNSASWAP 155 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EE----ECCSSCEEEEEECC
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-Ee----ecCCCceEEEEecC
Confidence 99999985 3456678899999999999 999999999999999999877443221 11 22357899999999
Q ss_pred C------------CCeEEEEEeCCCcEEEEECCcc----eeeEEeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 005956 451 D------------ESQRIMITSEDSKLRILDGVDV----IHKFKGLPKSGSQMSASFTTT---GKHIISIGDDCRVYVWN 511 (667)
Q Consensus 451 ~------------g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~Dg~I~iWd 511 (667)
. ++.++++++.||.|++||+... ........|...|.+++|+|+ +++|++++.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 4 2479999999999999997643 222333458899999999999 99999999999999999
Q ss_pred cCCCCcc------ccccccCccceeEEccCCcEEEEecC
Q 005956 512 YDELCFP------SSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 512 ~~~~~~~------~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
+.++... ........+.++.|+|+|.+++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 9887421 11224455667899999999998754
No 119
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=2.2e-25 Score=236.72 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=161.2
Q ss_pred ccccccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
..+...+.+++|||||++||+|+ .|++|+|||+.++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~------------------------------------------ 167 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL------------------------------------------ 167 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT------------------------------------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC------------------------------------------
Confidence 35667799999999999987654 7899999999863
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
+++..+ .|...|.+++|+|++ +|++++. +.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+
T Consensus 168 ---~~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~ 241 (365)
T 4h5i_A 168 ---TEKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKK 241 (365)
T ss_dssp ---EEEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESS
T ss_pred ---cEEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCC
Confidence 223444 377889999999999 7777764 56777777777665433 3788999999999 999999999887
Q ss_pred ----eEEEEecCCCeE-----EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe
Q 005956 373 ----KVRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI 443 (667)
Q Consensus 373 ----~v~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I 443 (667)
.+++|++..... .....+...|++++|+|||++||+|+.|++|+|||+.+.+..... ...|...|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~------~~gH~~~V 315 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF------KQAHSFAI 315 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE------TTSSSSCE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe------cCcccCCE
Confidence 688999877653 235677889999999999999999999999999999887654321 23456899
Q ss_pred EEEEEccCCCeEEEEEeCCCcEEEEECC
Q 005956 444 TGIQFSRDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 444 ~~l~~sp~g~~~l~~~s~dg~I~iwd~~ 471 (667)
++++|+||| ++|++++.|++|+|||+.
T Consensus 316 ~~v~fSpdg-~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 316 TEVTISPDS-TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred EEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence 999999996 899999999999999985
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.7e-24 Score=234.27 Aligned_cols=242 Identities=10% Similarity=0.084 Sum_probs=200.5
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+.+|.+.|++++|+|+++++++++.|+.|++||+.++
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~------------------------------------------ 201 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL------------------------------------------ 201 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC------------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc------------------------------------------
Confidence 45689999999999999999999999999999999852
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-----
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----- 369 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----- 369 (667)
+.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+.+++.+..+.+...+.+++|+| +++++++++
T Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 202 ---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASN 277 (433)
T ss_dssp ---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCT
T ss_pred ---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCc
Confidence 3456667888999999999998 55 455689999999999999999888878899999999 898998888
Q ss_pred ---cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 370 ---IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 370 ---~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
.|+.|++||+.+++......+...+.+++|+|+++.+ ++++.++.|++||+.+.+.... +. +...+.+
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~-~~-------~~~~~~~ 349 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS-IP-------VFDKPNT 349 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE-EE-------CSSSEEE
T ss_pred cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE-ec-------CCCCCCe
Confidence 4889999999999988777777789999999999765 5568899999999987654322 21 2367899
Q ss_pred EEEccCCCeEEEEEeC---------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 005956 446 IQFSRDESQRIMITSE---------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGD-DCRVYV 509 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-Dg~I~i 509 (667)
++|+|+| .++++++. ||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++
T Consensus 350 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 350 IALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred EEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 9999997 66666665 5799999987544333322 3567899999999999998875 999999
Q ss_pred EEcCC
Q 005956 510 WNYDE 514 (667)
Q Consensus 510 Wd~~~ 514 (667)
|++++
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99864
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.2e-24 Score=236.38 Aligned_cols=233 Identities=13% Similarity=0.157 Sum_probs=183.3
Q ss_pred eeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCC----------CeEeEEe-eCCCcEEEEEEeeCCCC-EEEEE
Q 005956 303 QELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGC----------NQCLNVF-DHHNYVTCVQFNPIDDN-YFISG 368 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~----------~~~~~~~-~h~~~V~~l~f~p~d~~-~l~sg 368 (667)
....+|.+.|++++|+|+ + +|++++.||.|++||+.+ ...+..+ .|...|++++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 445689999999999997 4 899999999999999976 4555555 4899999999999 666 99999
Q ss_pred ecCCeEEEEecCCCe--------EEEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC
Q 005956 369 SIDGKVRIWGVCEKR--------VVDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~--------~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+.||.|++||+..+. ...+..|...|.+++|+| ++..|++++.+|.|++||+++.........+ ..|
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~----~~~ 276 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV----DAH 276 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE----ECC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe----ecC
Confidence 999999999998732 123557888999999999 6789999999999999999976421111111 234
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---ceeeEEeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD---VIHKFKGLPKSGSQMSASFTTTGK-HIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~Dg~I~iWd~~~~ 515 (667)
...|++++|+|++..++++++.||.|++||++. ....+.. |...|.+++|+|+++ +|++++.|+.|+|||+...
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 578999999999866899999999999999875 2344444 788999999999995 6999999999999999873
Q ss_pred Cc--------------ccc-ccccCccceeEEccCCc-EEEEe
Q 005956 516 CF--------------PSS-KQKNSVRSCEHFFSEGV-SVAVQ 542 (667)
Q Consensus 516 ~~--------------~~~-~~~~~~~~~~~fs~dg~-~lav~ 542 (667)
.. ... ......+..+.|+|++. +++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 21 111 12234456678888887 55544
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.3e-25 Score=231.40 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=185.3
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
.+.|.++.|+|+ |++|+.|++|++|+.... +..+... ....
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---------------------~~~~~~~---------------~~~~ 116 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---------------------ITILDSK---------------TNKV 116 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTE---------------------EEEEETT---------------TCCE
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCc---------------------eEEeecC---------------Ccce
Confidence 467888889998 999999999999998741 0011000 0111
Q ss_pred ceeee-ccccceEEEEecC--CC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 302 LQELH-GHKGDVLDLAWSN--SN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 302 ~~~l~-gh~~~V~~l~~s~--~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
+..+. +|...|.+++|+| ++ +|++++.|++|++||+.+++++..+. +...|++++|+| ++.+|++|+.|+.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence 33333 6778999999999 88 99999999999999999999877663 556899999999 999999999999999
Q ss_pred EEecCCCeEE--Eecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCe--EEEEEcc
Q 005956 376 IWGVCEKRVV--DWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKI--TGIQFSR 450 (667)
Q Consensus 376 iwdl~~~~~~--~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I--~~l~~sp 450 (667)
+||+++++.. .+.. |...|++++|+|+|.+|++++ ++.|++||++..........+.. +...+ .+++|+|
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI----PEFKTGTVTYDIDD 270 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---------CCEEEEECT
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc----ccccccceEEEECC
Confidence 9999998865 4565 889999999999999999999 55999999998765432111111 11222 5799999
Q ss_pred CCCeEEEEEeC-CCcEEEEECCcceeeEEeCCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCC
Q 005956 451 DESQRIMITSE-DSKLRILDGVDVIHKFKGLPKSGSQMSASFTT---TGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 451 ~g~~~l~~~s~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+| .+|++++. |+.|+||+..+....+.. .++..++|++ +++.|++++.|+.+.++-...
T Consensus 271 ~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 271 SG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred CC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 96 78888888 999999997654333332 4567788888 889999999999999886544
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.2e-24 Score=234.85 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=175.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.|...|++++|||||++||+++.||.|+|||...
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------------------------------------- 116 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------------------------------------- 116 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------------------------------------------
Confidence 5688999999999999999999999999999652
Q ss_pred Ccceeeecccc-----ceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-------EeEEe-----eCCCcEEEEEEeeCC
Q 005956 300 SPLQELHGHKG-----DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-------CLNVF-----DHHNYVTCVQFNPID 361 (667)
Q Consensus 300 ~~~~~l~gh~~-----~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-------~~~~~-----~h~~~V~~l~f~p~d 361 (667)
.+..+. |.. .|.+++|||+| +|++|+.||+|+|||+.++. .+..+ +|...|.+++|+| +
T Consensus 117 -~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-d 193 (588)
T 2j04_A 117 -MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-D 193 (588)
T ss_dssp -EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-T
T ss_pred -eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-C
Confidence 233344 444 59999999999 99999999999999999875 24554 2678999999999 7
Q ss_pred CCEEEEEecCCeEEEEecCCCeEE----Ee-cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVV----DW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK 436 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~----~~-~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~ 436 (667)
+ +++++.|++|++||+.++... .+ ..|...|.+++|+ |+.+|+++ ++.|++||+.+...... .
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~-------~ 261 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL-------K 261 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-------E
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-------E
Confidence 7 888999999999999887742 23 3677899999999 68898887 69999999987765322 1
Q ss_pred CcCCCCeEEEEE--ccCCCeEEEEEeCCCcEEEEECCcce---------------ee-------EEeCCCCCCeEEEEEc
Q 005956 437 KTSGNKITGIQF--SRDESQRIMITSEDSKLRILDGVDVI---------------HK-------FKGLPKSGSQMSASFT 492 (667)
Q Consensus 437 ~~~~~~I~~l~~--sp~g~~~l~~~s~dg~I~iwd~~~~~---------------~~-------~~~~~~~~~v~~v~~s 492 (667)
..|...|..+.| +|++ ..+++++.+|+ ++|...... .. +....+...|.+++||
T Consensus 262 ~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~S 339 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLS 339 (588)
T ss_dssp CSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEEC
T ss_pred cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEEC
Confidence 135688999999 9996 88999999999 999864211 00 0011122348899999
Q ss_pred CCCCEEEEEeC
Q 005956 493 TTGKHIISIGD 503 (667)
Q Consensus 493 pdg~~l~sgs~ 503 (667)
|||+.+|+++.
T Consensus 340 PdG~~lA~~~~ 350 (588)
T 2j04_A 340 PDGYSIAIVYD 350 (588)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999873
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.5e-23 Score=224.83 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=197.2
Q ss_pred eeeccccccEEEEEEcC--------------CCCEEEEEECC------CcEEEEEcCCCceeeeeeCCCCCccccCCCCe
Q 005956 216 QEIQAHKGCIWTLKFSP--------------DGRYLASGGED------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGK 275 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fsp--------------dg~~Latgs~D------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~ 275 (667)
..+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g---------------------- 168 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG---------------------- 168 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----------------------
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----------------------
Confidence 45677888787777764 25666666654 7999999874
Q ss_pred EEecccCCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC---cEEEEecCCCeEeEEeeCCCc
Q 005956 276 IKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNY 351 (667)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg---~I~iWd~~~~~~~~~~~h~~~ 351 (667)
.....+.+|...|.+++|+|++ .|++++.++ .|++||+.++++.....|...
T Consensus 169 ------------------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 169 ------------------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp ------------------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred ------------------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 2356677899999999999999 899998885 999999999998877778889
Q ss_pred EEEEEEeeCCCCEEE-EEecCCe--EEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec-CC--cEEEEEecCCcc
Q 005956 352 VTCVQFNPIDDNYFI-SGSIDGK--VRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI-TG--TCHFYKASGNDL 425 (667)
Q Consensus 352 V~~l~f~p~d~~~l~-sgs~Dg~--v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~-dg--~i~l~d~~~~~~ 425 (667)
+.+++|+| ++++|+ +++.++. |++||+.+++...+..+...+.+++|+|||+.|++++. ++ .|.+||+.++..
T Consensus 225 ~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~ 303 (415)
T 2hqs_A 225 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP 303 (415)
T ss_dssp EEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred ccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence 99999999 898777 6666554 99999999998888888889999999999999998886 45 577778876653
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
. .+.. +...+..++|+|+| ++|++++.+ ..|++||+....... ...+ ..+.+++|+|+|++|++++
T Consensus 304 ~--~l~~------~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 304 Q--RITW------EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp E--ECCC------SSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEE
T ss_pred E--EEec------CCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEE
Confidence 2 1111 23578899999997 566666543 589999987543322 2223 3889999999999999998
Q ss_pred CCC---cEEEEEcCCCCccccccccCccceeEEcc
Q 005956 503 DDC---RVYVWNYDELCFPSSKQKNSVRSCEHFFS 534 (667)
Q Consensus 503 ~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~fs~ 534 (667)
.++ .|++||+.+............+...+|+|
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred cCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccc
Confidence 877 79999998665443333333333334444
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.8e-23 Score=214.47 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=141.1
Q ss_pred eccccceEEEEecCCCeEEEEe---CCCcEEEEec-CCCeEeEEe-eCCCcEEEEEEeeC--CCCEEEEEecCCeEEEEe
Q 005956 306 HGHKGDVLDLAWSNSNYLLSCS---MDKTVRMWQV-GCNQCLNVF-DHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWG 378 (667)
Q Consensus 306 ~gh~~~V~~l~~s~~~~l~s~s---~Dg~I~iWd~-~~~~~~~~~-~h~~~V~~l~f~p~--d~~~l~sgs~Dg~v~iwd 378 (667)
.+|...|..+ +++.++.++ .|++|++|++ .+++.+..+ .|...++.++|+|. ++.+|++|+.|++|+|||
T Consensus 133 ~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD 209 (356)
T 2w18_A 133 SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWN 209 (356)
T ss_dssp EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence 3455556554 566555554 5999999999 447776655 48888888888874 669999999999999999
Q ss_pred cCCCeEEEec-ccC---CceEEEEEeeCCCEE------------EEEecCCcEEEEEecCCcceee-eEeeccccCcCCC
Q 005956 379 VCEKRVVDWA-DVR---DVISAICYIPDGKGF------------IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGN 441 (667)
Q Consensus 379 l~~~~~~~~~-~~~---~~v~~v~~spdg~~l------------~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~ 441 (667)
+.+++.+... .+. ..+.+++|+|+|+++ ++|+.|++|++||..+++.... .+.+ ...|..
T Consensus 210 l~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~ 286 (356)
T 2w18_A 210 LKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAG 286 (356)
T ss_dssp TTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCC
T ss_pred CCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcc
Confidence 9999877643 332 357788999999887 5577899999999987765432 1111 112223
Q ss_pred CeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 442 KITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQM-SASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
.+.+..++ + .++++++.|++|+|||+.+........+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 287 ~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 34444444 2 5899999999999999986544444333655444 6899999999999999999999996
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=8.8e-23 Score=215.78 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=167.5
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEE-EEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYF-ISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l-~sgs~Dg~v~iw 377 (667)
.++..+.+|...|++++|+|++ +|++|+.+ .++||++.+++.+....+. .+..+.+.+ +++.+ ++++.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLH-RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECT-TSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcC-CCCEEEEEECCccEEEEE
Confidence 4556678899999999999999 77777666 5889999988776655443 477888888 66666 667888999999
Q ss_pred ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCC-cceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGN-DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~-~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
|+.+++.+....+...|.+++++++. ++++ .++.|++||+.+. +.... +.. +...+++++ .++
T Consensus 87 d~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~-~~~---------~~~~~~~s~---~~l 150 (355)
T 3vu4_A 87 DDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD-DIR---------FGGVCEFSN---GLL 150 (355)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC-CEE---------EEEEEEEET---TEE
T ss_pred ECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE-ecc---------CCceEEEEc---cEE
Confidence 99999988777788899999998864 4443 4889999999877 33221 111 334556666 245
Q ss_pred EE--EeCCCcEEEEECCcce----------------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEcCCCCc
Q 005956 457 MI--TSEDSKLRILDGVDVI----------------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCR-VYVWNYDELCF 517 (667)
Q Consensus 457 ~~--~s~dg~I~iwd~~~~~----------------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~-I~iWd~~~~~~ 517 (667)
++ ++.||.|++||+.... .......|...|.+++|+|+|++|++|+.|++ |+|||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 54 5899999999987532 02233448999999999999999999999998 99999998876
Q ss_pred ccccc---ccCccceeEEccCCcEEEEecCC
Q 005956 518 PSSKQ---KNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 518 ~~~~~---~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
..... ....+.+++|+|||.+||++..+
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 54432 45667788999999999987654
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.3e-23 Score=223.98 Aligned_cols=271 Identities=11% Similarity=0.069 Sum_probs=201.6
Q ss_pred cccEEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 222 KGCIWTLKFSPDGR-YLASGG----EDG----VVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 222 ~~~I~~v~fspdg~-~Latgs----~Dg----~I~vWdv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+.|....|++.|. ++++|+ .|| .|+|||+ .++...
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~--------------------------------- 108 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL--------------------------------- 108 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---------------------------------
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---------------------------------
Confidence 34567777877775 666876 467 8999999 653211
Q ss_pred CCCcccccCCcceeeeccccceEEEEecC---------------CCeEEEEeCC------CcEEEEecCCCeEeEEeeCC
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSN---------------SNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH 349 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~---------------~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~ 349 (667)
....+.+|...+..+++++ ...++.++.+ ++|++||+..+.......|.
T Consensus 109 ----------~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~ 178 (415)
T 2hqs_A 109 ----------AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP 178 (415)
T ss_dssp ----------EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES
T ss_pred ----------eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC
Confidence 0134667777777776654 3466666554 79999999866655555689
Q ss_pred CcEEEEEEeeCCCCEEEEEecCC---eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCc--EEEEEecCC
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDG---KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGT--CHFYKASGN 423 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~--i~l~d~~~~ 423 (667)
..|.+++|+| ++++|++++.++ .|++||+.+++...+..+...+.+++|+|||+.|+ +++.+|. |++||+.++
T Consensus 179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 9999999999 999999999885 99999999999888888888999999999999888 5565554 899999876
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC-CC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
+... + ..+...+.+++|+|+| ++|++++. ++ .|++||+...... ....+...+.+++|+|+|++|++
T Consensus 258 ~~~~----l----~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~ 327 (415)
T 2hqs_A 258 QIRQ----V----TDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVM 327 (415)
T ss_dssp CEEE----C----CCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEE
T ss_pred CEEe----C----cCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEE
Confidence 5421 1 1234679999999997 66666665 55 6777887654322 12225667889999999999998
Q ss_pred EeCC---CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecCCCC
Q 005956 501 IGDD---CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 501 gs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
++.+ ..|++||+.+++........ ....+.|+|||..|+++....+
T Consensus 328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 328 VSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp EEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred EECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence 8864 58999999988764433333 5667899999999988765443
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=6.9e-23 Score=210.12 Aligned_cols=215 Identities=10% Similarity=0.031 Sum_probs=154.0
Q ss_pred ccccEEEEEEcCC----CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 221 HKGCIWTLKFSPD----GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 221 H~~~I~~v~fspd----g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
|.+.|++++|+|| ++++++++.+ ++||++.++....... ...++.++++....
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~--------~g~d~~V~~~~~s~------------- 166 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSG--------TLSDQQVEVMTFAE------------- 166 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEES--------SSTTCEEEEEEECT-------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecc--------cCCCCcEEEEEECC-------------
Confidence 6678999999999 9999998854 8889886533222111 01233444333211
Q ss_pred ccCCcceeeeccccceEEEEecC---CC-eEEEEeCCCcEEEEecCCCeEeEEee-C---CCcEEEEEEeeCCCCEE---
Q 005956 297 IEESPLQELHGHKGDVLDLAWSN---SN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H---HNYVTCVQFNPIDDNYF--- 365 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~---~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h---~~~V~~l~f~p~d~~~l--- 365 (667)
.++.+..+.+|...+..++|++ ++ .|++++.|++|+|||+.++++++++. | ...+.+++|+| ++.++
T Consensus 167 -dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~ 244 (356)
T 2w18_A 167 -DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVL 244 (356)
T ss_dssp -TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEE
T ss_pred -CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEe
Confidence 1344667789999999999998 55 99999999999999999999999985 3 34678889999 88876
Q ss_pred ---------EEEecCCeEEEEecCCCeEEEec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeE
Q 005956 366 ---------ISGSIDGKVRIWGVCEKRVVDWA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 366 ---------~sgs~Dg~v~iwdl~~~~~~~~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
++|+.|++|++||..+++.+... +|...+. ..+.++..+++|+.||+|+|||+.+++....
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-- 320 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-- 320 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE--
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE--
Confidence 56888999999999999876432 3333443 3344488999999999999999998876543
Q ss_pred eeccccCcCCCC-eEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 431 DFHDRKKTSGNK-ITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 431 ~~~~~~~~~~~~-I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
+.+ |... +..++|+|+| ++|++|+.|++|+|||.
T Consensus 321 -L~g----H~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 -LPP----VSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -ECC----C--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred -ecC----CCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 222 2233 4568999996 89999999999999984
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=4.9e-22 Score=230.65 Aligned_cols=292 Identities=11% Similarity=0.056 Sum_probs=196.3
Q ss_pred cccEEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 222 KGCIWTLKFSPDGRYLASGGE-DG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~-Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
...|.+++|||||++|++++. |+ .|++||+.++............ .++.. +.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~~-----------~~------ 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-----PGTET-----------LS------ 93 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-----ccccc-----------cc------
Confidence 457999999999999999998 88 9999999876543322111000 00000 00
Q ss_pred cccCCcceeee--ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCC---eEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956 296 QIEESPLQELH--GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCN---QCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 296 ~~~~~~~~~l~--gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.......... .....|.+++|+||| +|++++. +.|++||+.++ .......+...+.+++|+| |+++|++++
T Consensus 94 -~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 94 -DEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR 170 (741)
T ss_dssp --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE
T ss_pred -chhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe
Confidence 0000000000 012458899999999 7777776 99999999988 6665556888999999999 999999887
Q ss_pred cCCeEEEEecCCCeEEEecccCCc-----------------eEEEEEeeCCCEEEEEecCC-------------------
Q 005956 370 IDGKVRIWGVCEKRVVDWADVRDV-----------------ISAICYIPDGKGFIVGSITG------------------- 413 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~~~~~~~-----------------v~~v~~spdg~~l~~gs~dg------------------- 413 (667)
++.|++||+.+++.......... +..++|+|||++|++++.++
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 56999999999887765443222 47899999999999988765
Q ss_pred --------------cEEEEEecC-CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe-----CCCcEEEEECCcc
Q 005956 414 --------------TCHFYKASG-NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-----EDSKLRILDGVDV 473 (667)
Q Consensus 414 --------------~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-----~dg~I~iwd~~~~ 473 (667)
.|.+||+.+ ++.... ... ..+...+..++| ||| ++|++++ .+..|++||+.+.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~--~~~---~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWI--DLG---KEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEE--CCC---SCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEe--cCC---CCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCC
Confidence 788888877 654321 111 123467899999 997 5555544 3568999998753
Q ss_pred e--eeEEeCCCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCccccccccC-ccceeEEccCCcEEEEecCCC
Q 005956 474 I--HKFKGLPKSG---SQMSASFTTTGKHIISIGDDCRVYVWNYD-ELCFPSSKQKNS-VRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 474 ~--~~~~~~~~~~---~v~~v~~spdg~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~~-~~~~~~fs~dg~~lav~w~~~ 546 (667)
. ..+... ... .+..++|+|||+++++++.||.++||.++ ++.......... +.....|+|||..+++....+
T Consensus 323 ~~~~~~~~~-~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 323 QQRVLAHET-SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp CEEEEEEEE-CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred ceEEEEEcC-CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 3 333322 111 34678999999999999999988888765 222222222222 233346999999887766655
Q ss_pred C
Q 005956 547 G 547 (667)
Q Consensus 547 ~ 547 (667)
+
T Consensus 402 ~ 402 (741)
T 2ecf_A 402 S 402 (741)
T ss_dssp C
T ss_pred C
Confidence 4
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=5.7e-21 Score=213.27 Aligned_cols=281 Identities=11% Similarity=0.126 Sum_probs=205.3
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEc--CCCceeeeeeCCCCCccccCCCCeEEecccCCCCceee
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHV--TSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVV 289 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (667)
..+.+++..+.. +..++|+|||++|++++.|++|++||+ .++
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~----------------------------------- 212 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP----------------------------------- 212 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-----------------------------------
T ss_pred ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC-----------------------------------
Confidence 344556663333 899999999999999999999999999 542
Q ss_pred cCCCcccccCCcceeeeccccceEEEEecC----CC-eEEEEe-CCCcEEEEecCCCeEeEEeeC------------CCc
Q 005956 290 IPDEVFQIEESPLQELHGHKGDVLDLAWSN----SN-YLLSCS-MDKTVRMWQVGCNQCLNVFDH------------HNY 351 (667)
Q Consensus 290 ~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~----~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~h------------~~~ 351 (667)
+.+.++. +...+..++|+| ++ +|++++ .+++|.|||..+++++..+.. ...
T Consensus 213 ----------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 213 ----------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp ----------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred ----------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 2234444 345679999999 99 777776 589999999999999888752 237
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE--ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceee
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD--WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~--~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~ 428 (667)
+..+.++|.+..++++...+++|.+||+.+.+... ...+...+..+.|+|+|+++++++ .+++|.+||+.++++...
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 89999999445566777788999999998765332 334566788899999999877665 588999999998865432
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCc---------ceeeEEeCCCCCCeEEEEEcCCCCEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTTTGKHI 498 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~spdg~~l 498 (667)
+.. ....|.+....+ ++|+++..++++. .|++|.+||+.. .++.+.. +...+..++|+|+|++|
T Consensus 362 -i~~--g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 362 -VDV--GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHL 435 (543)
T ss_dssp -EEC--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCCEE
T ss_pred -ecc--CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCCceEEEcCCCCCcE
Confidence 221 122233333333 5777556666665 689999999754 3444544 56677889999999999
Q ss_pred EEEe-------CCCcEEEEEcCCCCcc-ccc---------cccCccceeEEccCCcEEEEe-cCC
Q 005956 499 ISIG-------DDCRVYVWNYDELCFP-SSK---------QKNSVRSCEHFFSEGVSVAVQ-WPG 545 (667)
Q Consensus 499 ~sgs-------~Dg~I~iWd~~~~~~~-~~~---------~~~~~~~~~~fs~dg~~lav~-w~~ 545 (667)
++++ .+++|.|||+.+++.. ... ..........|+|||..+.++ |+.
T Consensus 436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 9987 2679999999988764 211 112334457999999998885 654
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=7e-21 Score=198.29 Aligned_cols=248 Identities=11% Similarity=0.126 Sum_probs=176.8
Q ss_pred cccccEEEEEEcCCCCEEEEEECC-CcEEEEEcC--CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGED-GVVRIWHVT--SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~D-g~I~vWdv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------------------------- 74 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------------------------- 74 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------------------------------
Confidence 477789999999999999999887 999999997 2111
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEec---CCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe-c
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQV---GCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS-I 370 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~---~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs-~ 370 (667)
..+..+..+. .+..++|+|++ +|++++ .++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .
T Consensus 75 ---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~ 149 (343)
T 1ri6_A 75 ---TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALK 149 (343)
T ss_dssp ---EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGG
T ss_pred ---eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCC
Confidence 1123333333 78899999999 666555 4889999999 4445556666666799999999 888888777 8
Q ss_pred CCeEEEEecCC-CeEEE------ecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC--Ccceee-eEeeccccCcC
Q 005956 371 DGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKLE-KVDFHDRKKTS 439 (667)
Q Consensus 371 Dg~v~iwdl~~-~~~~~------~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~--~~~~~~-~~~~~~~~~~~ 439 (667)
++.|++||+.+ +++.. .......+..++|+|+|+++++++ .++.+.+|++.. +..... .+.........
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 99999999987 65432 122345788999999999776655 789999999964 332211 11111101111
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYD 513 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~ 513 (667)
...+..++|+|+|..++++...++.|.+||+. ......... ....+..++|+|+|++|++++ .++.|.+|+++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 34677899999974444456689999999986 222222222 223488999999999998888 57999999654
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=3.2e-21 Score=195.75 Aligned_cols=236 Identities=12% Similarity=0.038 Sum_probs=170.4
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-CeEeEEee-C-CCcEEEEEEeeCCCCEEEEEec--C--CeE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-NQCLNVFD-H-HNYVTCVQFNPIDDNYFISGSI--D--GKV 374 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h-~~~V~~l~f~p~d~~~l~sgs~--D--g~v 374 (667)
..+..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| ++++|++++. + ..|
T Consensus 35 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence 3455688899999999999 777765 88999999999 87776664 3 36789999999 9999999983 3 445
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
..|++.+++...+..+ ..+..++|+|+|+.|+ ++..++.+++|++.........+ ..+...+.++.|+|+|.
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL------THGEGRNDGPDYSPDGR 185 (297)
T ss_dssp EEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC------CCSSSCEEEEEECTTSS
T ss_pred EEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc------ccCCCccccceECCCCC
Confidence 5556666665544433 3488999999999887 67789999999976432222211 12346799999999974
Q ss_pred eEEEEEeCCCcEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCCccccc
Q 005956 454 QRIMITSEDSKLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----------CRVYVWNYDELCFPSSK 521 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----------g~I~iWd~~~~~~~~~~ 521 (667)
.+++++..++.++||++. ..........+...+..++|+|+|++|++++.+ +.|++||+.+++.....
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 344444468999999864 222222223356678899999999999988876 56999999987653322
Q ss_pred ---cccCccceeEEccCCcEEEEecCCCC
Q 005956 522 ---QKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 522 ---~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
........+.|+|||..|++......
T Consensus 266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 266 DLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ccCCCCcccccceECCCCCEEEEEEeccC
Confidence 22344566799999999998766543
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.4e-20 Score=195.36 Aligned_cols=271 Identities=9% Similarity=0.081 Sum_probs=200.7
Q ss_pred ccccEEEEEEcCCCCEEEEEEC-------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGE-------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~-------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
+...+..++|+|+|++|++++. ++.|.+||..++..
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~------------------------------------- 81 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV------------------------------------- 81 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------------------------------
Confidence 4566889999999999988874 56899999886322
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCC----------cEEEEEEeeCC
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN----------YVTCVQFNPID 361 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~----------~V~~l~f~p~d 361 (667)
+..+.. ...+..++|+|++ ++ ++...++.|.+||..+++.+..+.... .+.+++|+| +
T Consensus 82 --------~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 151 (353)
T 3vgz_A 82 --------TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-A 151 (353)
T ss_dssp --------EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-T
T ss_pred --------EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-C
Confidence 222221 2346788999998 44 455668999999999999888876322 278999999 8
Q ss_pred CCEEEEEe--cCCeEEEEecCCCeEEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCc
Q 005956 362 DNYFISGS--IDGKVRIWGVCEKRVVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKT 438 (667)
Q Consensus 362 ~~~l~sgs--~Dg~v~iwdl~~~~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~ 438 (667)
++++++++ .++.|.+||+.+++...... +...+..++|+|+|+.+++++.++.+.+||+.+.+.... +... ...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~--~~~ 228 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR-KKLL--DDG 228 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE-EECC--CSS
T ss_pred CCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE-EEcC--CCC
Confidence 88777766 47889999999998877555 556688999999999999999999999999987765432 2221 112
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce--eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI--HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDEL 515 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~ 515 (667)
+...+..++|+|+|..++++...++.|.+||..+.. ..+.. .. ...++|+|+|+++++++ .++.|.+||..++
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 235688999999975455555556999999987443 33332 22 25689999999776665 6899999999988
Q ss_pred CccccccccCccceeEEccCCcEEEEecCC
Q 005956 516 CFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 516 ~~~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
+.............+.|+|||+.+.++...
T Consensus 305 ~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 305 KVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 765444444455678999999988776543
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=7e-20 Score=190.44 Aligned_cols=268 Identities=10% Similarity=0.078 Sum_probs=186.5
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956 228 LKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (667)
Q Consensus 228 v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (667)
..|.++++ .+++++.++.|.+||+.++. ....+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---------------------------------------------~~~~~~ 37 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---------------------------------------------ILNQIT 37 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC---------------------------------------------EEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc---------------------------------------------eeeeEE
Confidence 34566555 47788889999999998632 233344
Q ss_pred ccccceEEEEecCCC-eEEEEeC-CCcEEEEecCCCeE-eEEeeC-CCcEEEEEEeeCCCCEEEEEecCC---eEEEEec
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQC-LNVFDH-HNYVTCVQFNPIDDNYFISGSIDG---KVRIWGV 379 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~-~~~~~h-~~~V~~l~f~p~d~~~l~sgs~Dg---~v~iwdl 379 (667)
.+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+.+ ..+..+++|+| ++++++++..++ .|.+||+
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEET
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEEC
Confidence 445556 99999999 5665555 89999999999887 666654 44444499999 999888555443 8999999
Q ss_pred CCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCc-EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 380 CEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGT-CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 380 ~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~-i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
.+++.+........+..++|+|+|++++++ ..++. +.+|++.......... .. ..........++|+|+|..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~--~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 116 LKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE--FISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE--EECSSSSEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc--cccCCCCccceEECCCCCEEEE
Confidence 999988766667778999999999866665 45578 9999998544332210 00 1122356899999999744556
Q ss_pred EEeCCCcEEEEECCccee---eEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCcccc--------cccc-
Q 005956 458 ITSEDSKLRILDGVDVIH---KFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSS--------KQKN- 524 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~--------~~~~- 524 (667)
++..++.|++||+..... ..... ....+..++|+|||++|++++ .++.|.+||+.+++.... ....
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred EeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence 666789999999864322 22221 346678899999999887665 478899999998765111 0011
Q ss_pred -CccceeEEccCCcEEEEecCCC
Q 005956 525 -SVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 525 -~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.....+.|+|||..|+++....
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTT
T ss_pred cccccceEECCCCCEEEEecCCC
Confidence 1113469999999998876544
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.2e-20 Score=227.41 Aligned_cols=360 Identities=11% Similarity=0.061 Sum_probs=238.1
Q ss_pred ceeeccccccEEEEEEcCCCCEEEEEECC------CcEEEEEcCCCce-----------------eeeeeCCCCCccccC
Q 005956 215 SQEIQAHKGCIWTLKFSPDGRYLASGGED------GVVRIWHVTSVAA-----------------SCKSFTDDGGFGSNA 271 (667)
Q Consensus 215 ~~~l~~H~~~I~~v~fspdg~~Latgs~D------g~I~vWdv~~~~~-----------------~~~~~~~~~~~~~~~ 271 (667)
.+.|.+|.+.|.+++|||||++||+++.+ ..|.+|++.++.. ....|++++.++...
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~ 124 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 124 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence 35677899999999999999999988653 3799999876421 345667777633322
Q ss_pred CC-------CeEEecccCCCCceeecCC---------------------------------Cccc-ccCCcceeeecccc
Q 005956 272 KE-------GKIKFGKKKSSHVPVVIPD---------------------------------EVFQ-IEESPLQELHGHKG 310 (667)
Q Consensus 272 ~~-------~~~~~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~~~~l~gh~~ 310 (667)
.. ..+..+............. .+|. ........+.+|..
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 11 1233332211111100000 0010 01133455678999
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~ 389 (667)
.+.++.|+++..+++++.|++++||.+.. +.....+.+...+...+|+| +++.|+++ .++.|++||+...++..+..
T Consensus 205 ~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~~l~~l~~ 282 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNT-DGRRILFS-KGGSIYIFNPDTEKIEKIEI 282 (1045)
T ss_dssp CCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEE-SSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred cccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcC-CCCEEEEE-eCCEEEEecCCceEeeeecc
Confidence 99999999886667788899999998753 33444444333566779999 99988887 48999999996665554333
Q ss_pred -----------cCCceEEEEEe-eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCC-CeEEEEEccCCCeEE
Q 005956 390 -----------VRDVISAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGN-KITGIQFSRDESQRI 456 (667)
Q Consensus 390 -----------~~~~v~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~-~I~~l~~sp~g~~~l 456 (667)
+...+.+++|+ |||+.|++++ ++.+.+|++.+..... + ..+.. .+..++|+ +| ..|
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~----~~~~~~~~~~~~~s-dg-~~l 351 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V----PEPLRIRYVRRGGD-TK-VAF 351 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C----SCCSCEEEEEECSS-SE-EEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----c----cCCCcceEEeeeEc-CC-CeE
Confidence 23368999999 9999999887 8899999987654321 1 11234 78999999 85 778
Q ss_pred EEEeCCCcEE-EEECCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCccceeEEc
Q 005956 457 MITSEDSKLR-ILDGVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCEHFF 533 (667)
Q Consensus 457 ~~~s~dg~I~-iwd~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~fs 533 (667)
+.++.++.+. +||..... ..+. .+...+..++|+|||++|++++.++.|++||+.+++..... ........+.|+
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 8888888888 99976432 2222 46788999999999999999999999999999988765443 333444667999
Q ss_pred cCCcEEEEecCCC--------CcccccccCCCCCCcCccCcCCCCCCcccCCCcccCCCCCCCCCCCCC
Q 005956 534 SEGVSVAVQWPGI--------GTEQKSLCSSSLRDCSQKWDNLETAPWIRDSERFSLGSWFSNDGPCRG 594 (667)
Q Consensus 534 ~dg~~lav~w~~~--------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~fS~~~~~~~~g~~~g 594 (667)
|||++||+..... ...+.++...... . ..+...........|||++.+++.++.++
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~---~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--I---FAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--E---EECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc--E---EEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 9999998875432 1223333221110 0 11111112223356899998776655543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.6e-20 Score=189.76 Aligned_cols=252 Identities=10% Similarity=0.088 Sum_probs=176.6
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
..+..+...+ +++|+|||++|++++. ++.|.+||+.++..
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------------------------------------- 74 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------------------------------------- 74 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------------------
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------------------
Confidence 3444556667 9999999997777766 89999999986321
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCC---cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EEe
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDK---TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SGS 369 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sgs 369 (667)
....+..+..+..+++|+|++ +|+++..++ .|.+||+.+++.+..+.....+.+++|+| ++++++ +..
T Consensus 75 ------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 147 (331)
T 3u4y_A 75 ------KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDR 147 (331)
T ss_dssp ------EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEE
T ss_pred ------eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEec
Confidence 034445555566569999999 677544442 89999999999999888777889999999 887554 445
Q ss_pred cCCe-EEEEecCCCeE-----EEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 370 IDGK-VRIWGVCEKRV-----VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 370 ~Dg~-v~iwdl~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
.++. |.+|++..... .........+..++|+|+|+++++++ .++.|.+||+.+.+.......+.. ...
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~ 222 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----NNL 222 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----SSC
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----CCC
Confidence 5588 99999875332 12234456689999999999776655 688999999987765211111111 256
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCccee----eEEeC--CCC---CCeEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIH----KFKGL--PKS---GSQMSASFTTTGKHIISIGD-DCRVYVWNY 512 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~----~~~~~--~~~---~~v~~v~~spdg~~l~sgs~-Dg~I~iWd~ 512 (667)
+..++|+|+|..++++...++.|.+||..+... .+... .+. .....++|+|||++|++++. ++.|.|||+
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 788999999743444455678899999875332 11111 011 12245899999999876655 569999999
Q ss_pred CCCCcc
Q 005956 513 DELCFP 518 (667)
Q Consensus 513 ~~~~~~ 518 (667)
.+....
T Consensus 303 ~~~~~~ 308 (331)
T 3u4y_A 303 SGKVVG 308 (331)
T ss_dssp TSCEEE
T ss_pred cCCccc
Confidence 876543
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.3e-19 Score=188.65 Aligned_cols=237 Identities=13% Similarity=0.135 Sum_probs=166.7
Q ss_pred ccccceEEEEecCCC-eEEEEeCC-CcEEEEecC--CCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEec-CCeEEEEec
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSMD-KTVRMWQVG--CNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSI-DGKVRIWGV 379 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~D-g~I~iWd~~--~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl 379 (667)
.|...+.+++|+|++ +|++++.+ +.|.+|++. +++ .+..+.....+..++|+| +++++++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 466788999999999 78888776 999999997 554 344455445889999999 8887776665 889999999
Q ss_pred ---CCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC-Ccceeee-EeeccccCcCCCCeEEEEEccCCC
Q 005956 380 ---CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEK-VDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 380 ---~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~-~~~~~~~-~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
...+..........+.+++|+|+|+++++++ .++.|.+||+.+ +...... .... ......+..++|+|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~pdg~ 190 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVFHPNEQ 190 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEECTTSS
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc---cCCCCCcceEEECCCCC
Confidence 4444555555556789999999999888887 899999999986 4332111 0111 11235788999999974
Q ss_pred eEEEEEeCCCcEEEEECCc--c----eeeEEeC----CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CCCccc-
Q 005956 454 QRIMITSEDSKLRILDGVD--V----IHKFKGL----PKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYD--ELCFPS- 519 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~--~----~~~~~~~----~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~--~~~~~~- 519 (667)
.+++++..++.|.+||+.. . ....... .....+..++|+|+|++|+++ ..++.|++|++. ++....
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 4445555889999999842 1 1222211 113456789999999988754 478999999998 332211
Q ss_pred -cccccCccceeEEccCCcEEEEecCCCC
Q 005956 520 -SKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 520 -~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
..........+.|+|+|..|+++...++
T Consensus 271 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 271 GFQPTETQPRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp EEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred eeecCCCccceEEECCCCCEEEEecCCCC
Confidence 1122222556799999998888765443
No 138
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=1.4e-19 Score=201.91 Aligned_cols=305 Identities=12% Similarity=0.039 Sum_probs=211.8
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee-cc
Q 005956 230 FSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GH 308 (667)
Q Consensus 230 fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gh 308 (667)
|+|++.++++++.|++|.+||..++ +.+.++. +|
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~---------------------------------------------~~~~~i~~g~ 179 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK---------------------------------------------KIVKVIDTGY 179 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC---------------------------------------------CEEEEEECST
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc---------------------------------------------eEEEEEecCc
Confidence 7899999999999999999999863 3345555 44
Q ss_pred ccceEEEEecCCC-eEEEEeCCCcEEEEec--CCCeEeEEeeCCCcEEEEEEeeC---CCCEEEEEe-cCCeEEEEecCC
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNVFDHHNYVTCVQFNPI---DDNYFISGS-IDGKVRIWGVCE 381 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~--~~~~~~~~~~h~~~V~~l~f~p~---d~~~l~sgs-~Dg~v~iwdl~~ 381 (667)
. +..++|+|++ +|++++.|++|++||+ .+++++..+.+...+..++|+|. +++++++++ .+++|.+||..+
T Consensus 180 ~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 180 A--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp T--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred c--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 3 8899999999 9999999999999999 88999999888888999999982 577777777 589999999999
Q ss_pred CeEEEeccc------------CCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEE
Q 005956 382 KRVVDWADV------------RDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 382 ~~~~~~~~~------------~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~ 447 (667)
++++..... ...+.++.++|++..+ ++...+|.|.+||+.+.+.... .+. +...+..+.
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-------~~~~~~~~~ 330 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-------AAPFLHDGG 330 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-------CCSSCCCEE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-------cCcCccCce
Confidence 887654322 2268899999987655 4566789999999987654321 221 135677899
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCccee--eEEeC--CCCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEEcCC-------
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVDVIH--KFKGL--PKSGSQMSASFTTT-GKHIISIG-DDCRVYVWNYDE------- 514 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~~~~--~~~~~--~~~~~v~~v~~spd-g~~l~sgs-~Dg~I~iWd~~~------- 514 (667)
|+|+|..+++++..+++|.+||..+... .+... .|.+....+ ++|+ |.+++++. .|++|.|||+++
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 9999744455556789999999875433 33321 244334443 4777 66666665 589999999988
Q ss_pred CCccccccc-cCccceeEEccCCcEEEEecC--CC---CcccccccCCCCCCcCc-----cCcCCCCCCcccCCCcccCC
Q 005956 515 LCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP--GI---GTEQKSLCSSSLRDCSQ-----KWDNLETAPWIRDSERFSLG 583 (667)
Q Consensus 515 ~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~--~~---~~~~~~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~fS~~ 583 (667)
.+....... ......+.|+|||+.|.+... ++ ...+.++.......-+. .|..++......-...|+++
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 489 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 489 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence 333222222 223345799999999999763 22 12333333333222111 22223333334445678888
Q ss_pred CCCCCC
Q 005956 584 SWFSND 589 (667)
Q Consensus 584 ~~~~~~ 589 (667)
+.++..
T Consensus 490 g~~~~~ 495 (543)
T 1nir_A 490 GDEVWF 495 (543)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 887664
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=4.3e-20 Score=187.37 Aligned_cols=234 Identities=14% Similarity=0.123 Sum_probs=172.5
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+..|.+.|.+++|+|||++|++++ ++.|.+||+.+ +..
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--------------------------------------- 75 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--------------------------------------- 75 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------------------
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------------------
Confidence 4556899999999999999999987 78999999975 322
Q ss_pred cccCCcceeeecc-ccceEEEEecCCC-eEEEEe--CCCcEEEEe--cCCCeEeEEeeCCCcEEEEEEeeCCCCEEE-EE
Q 005956 296 QIEESPLQELHGH-KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQ--VGCNQCLNVFDHHNYVTCVQFNPIDDNYFI-SG 368 (667)
Q Consensus 296 ~~~~~~~~~l~gh-~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd--~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~-sg 368 (667)
...+.+| ...|.+++|+|++ +|++++ .++.++||. +.++. ...+.+...+.+++|+| ++++|+ ++
T Consensus 76 ------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~ 147 (297)
T 2ojh_A 76 ------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCG 147 (297)
T ss_dssp ------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEE
T ss_pred ------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEE
Confidence 2222334 4678899999999 888888 334555555 45554 44455555699999999 888776 78
Q ss_pred ecCCeEEEEec--CCCeEEEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE
Q 005956 369 SIDGKVRIWGV--CEKRVVDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 369 s~Dg~v~iwdl--~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
+.++.++||++ .+++......+...+.+++|+|+|+.|++++ .++.+++|++.........+ ..+...+..
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~ 221 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWF 221 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC------CCCSEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE------ecCCcccCC
Confidence 88999999985 5567777777888899999999999888776 58999999987332222221 112357889
Q ss_pred EEEccCCCeEEEEEeCC-----------CcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 446 IQFSRDESQRIMITSED-----------SKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~d-----------g~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
+.|+|+| .+|++++.+ +.|++||+... ........+...+..++|+|+|++|++++.+.
T Consensus 222 ~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999997 666666554 56999998643 22333223677888999999999999887654
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=1.3e-20 Score=217.86 Aligned_cols=272 Identities=14% Similarity=0.124 Sum_probs=187.3
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.+.+++|+|||+++++ +.||+|++||+.++. ...
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~---------------------------------------------~~~ 51 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT---------------------------------------------STV 51 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC---------------------------------------------CEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc---------------------------------------------EEE
Confidence 4678999999998877 789999999998632 233
Q ss_pred eeecccc---ceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956 304 ELHGHKG---DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 304 ~l~gh~~---~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s 367 (667)
.+.+|.. .|.+++|+||| +|++++.+ +.|.+||+.+++...... |...+..++|+| |++.|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEE
Confidence 4444543 48999999999 88888764 788899999987633222 344588999999 9999999
Q ss_pred EecCCeEEEEecCCCeEEEeccc-CC------------------ceEEEEEeeCCCEEEEEecCC---------------
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADV-RD------------------VISAICYIPDGKGFIVGSITG--------------- 413 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~-~~------------------~v~~v~~spdg~~l~~gs~dg--------------- 413 (667)
++. +.|++||+.+++....... .. .+.+++|+|||+.|++++.++
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 886 7999999999876654332 22 237899999999999987653
Q ss_pred -------------------cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC----CCcEEEEEC
Q 005956 414 -------------------TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE----DSKLRILDG 470 (667)
Q Consensus 414 -------------------~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~----dg~I~iwd~ 470 (667)
.|++||+.+...... +........+...+..++|+||| ++|++... +..|++||+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~-l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE-MMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE-CCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEET
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEE-eeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeC
Confidence 788899887653221 11111111124578999999997 66655542 357999997
Q ss_pred Ccce--eeEEeCCCCCCe----EEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCC---cccccc-ccCccceeE
Q 005956 471 VDVI--HKFKGLPKSGSQ----MSASFTTTGKHIIS--IGDDC------RVYVWN-YDELC---FPSSKQ-KNSVRSCEH 531 (667)
Q Consensus 471 ~~~~--~~~~~~~~~~~v----~~v~~spdg~~l~s--gs~Dg------~I~iWd-~~~~~---~~~~~~-~~~~~~~~~ 531 (667)
.... ..+... +...+ ..++|+|||++|+. +..++ .|++|| ..++. ...... .........
T Consensus 288 ~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 288 TTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 6432 222221 22333 37899999997775 44566 577777 44444 222222 222333468
Q ss_pred EccCCcEEEEecCCC
Q 005956 532 FFSEGVSVAVQWPGI 546 (667)
Q Consensus 532 fs~dg~~lav~w~~~ 546 (667)
|+|||+.|++.....
T Consensus 367 ~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 367 YDEKGNKIYFLSTED 381 (723)
T ss_dssp EETTTTEEEEEESSS
T ss_pred EcCCCCEEEEEEcCC
Confidence 999999998766553
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=9.8e-20 Score=211.28 Aligned_cols=271 Identities=11% Similarity=0.049 Sum_probs=194.0
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..|.+++|||||++|++++. +.|.+||+.++.. ...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-------------------------------------------~~~ 144 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-------------------------------------------AAV 144 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCST-------------------------------------------TSC
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc-------------------------------------------ceE
Confidence 34889999999999999987 9999999986200 023
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc----------------EEEEEEeeCCCCE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY----------------VTCVQFNPIDDNY 364 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~----------------V~~l~f~p~d~~~ 364 (667)
..+..|...+..++|+||| +|+.++ ++.|++||+.+++...... +... +..++|+| |+++
T Consensus 145 ~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~ 222 (741)
T 2ecf_A 145 RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSA 222 (741)
T ss_dssp CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSC
T ss_pred EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCE
Confidence 3455677889999999999 777776 5699999999988776554 2222 47899999 9999
Q ss_pred EEEEecCC---------------------------------eEEEEecCC-CeEEEec---ccCCceEEEEEeeCCCEEE
Q 005956 365 FISGSIDG---------------------------------KVRIWGVCE-KRVVDWA---DVRDVISAICYIPDGKGFI 407 (667)
Q Consensus 365 l~sgs~Dg---------------------------------~v~iwdl~~-~~~~~~~---~~~~~v~~v~~spdg~~l~ 407 (667)
|++++.|+ .|++||+.+ ++..... .+...+..++| |||+.|+
T Consensus 223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence 99988776 899999998 8765543 46677999999 9999999
Q ss_pred EEec-----CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-cceeeEEeCC
Q 005956 408 VGSI-----TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-DVIHKFKGLP 481 (667)
Q Consensus 408 ~gs~-----dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~ 481 (667)
+++. +..|.+||+.++..... ...+. ......+..++|+||| +++++++.++.++||... +.. ......
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~--~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQQRVL-AHETS--PTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCCEEEE-EEEEC--SSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred EEEecccCCeEEEEEEECCCCceEEE-EEcCC--CCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence 8764 56799999988765432 11111 0001145688999997 588888999977777643 111 222333
Q ss_pred CCCCeEEE-EEcCCCCEEEEE-eCCC--cEEEEEcCC-CCccccccccCccceeEEccCCcEEEEecCC
Q 005956 482 KSGSQMSA-SFTTTGKHIISI-GDDC--RVYVWNYDE-LCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 482 ~~~~v~~v-~~spdg~~l~sg-s~Dg--~I~iWd~~~-~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
+...+..+ .|+|+|++|+.. +.++ .++||++.. +..............+.|+|||..+++....
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEE
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecC
Confidence 56677777 599999987654 4455 899999864 3322222223334467999999999987554
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.3e-19 Score=209.52 Aligned_cols=280 Identities=11% Similarity=0.097 Sum_probs=192.8
Q ss_pred ceeeccccc---cEEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956 215 SQEIQAHKG---CIWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK 282 (667)
Q Consensus 215 ~~~l~~H~~---~I~~v~fspdg~~Latgs~D---------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (667)
.+.+.+|.. .|.+++|||||++||+++.+ +.|.+||+.++...
T Consensus 50 ~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------------------- 104 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------------------------- 104 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------
T ss_pred EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------
Confidence 345556655 49999999999999999875 77889999863221
Q ss_pred CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCc---------
Q 005956 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNY--------- 351 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~--------- 351 (667)
.+....+|...+..++|+||| .|++++. +.|++||+.+++...... +...
T Consensus 105 ------------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 105 ------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp ------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred ------------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 111223455668899999999 7887776 799999999988776654 2332
Q ss_pred ---------EEEEEEeeCCCCEEEEEecCC----------------------------------eEEEEecCCCeE-EEe
Q 005956 352 ---------VTCVQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRV-VDW 387 (667)
Q Consensus 352 ---------V~~l~f~p~d~~~l~sgs~Dg----------------------------------~v~iwdl~~~~~-~~~ 387 (667)
+.+++|+| |+++|++++.|+ .|++||+.+++. ..+
T Consensus 166 v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 27899999 999999987653 799999998874 344
Q ss_pred ccc------CCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCe----EEEEEccCCC
Q 005956 388 ADV------RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKI----TGIQFSRDES 453 (667)
Q Consensus 388 ~~~------~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I----~~l~~sp~g~ 453 (667)
..+ ...+..++|+|||+++++.... ..|.+||+.+++..... .... ...+ ..++|+|||.
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~-----~~~~~~~~~~~~~spdg~ 318 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-EDES-----EAWLHRQNEEPVFSKDGR 318 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-EEEC-----SSCCCCCCCCCEECTTSC
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE-Eecc-----CCEEeccCCCceEcCCCC
Confidence 332 5678999999999988776543 57999999877653321 1111 1222 3789999985
Q ss_pred eEEEE-EeCCC------cEEEEE-CCcc----eeeEEeCCCCCCeEE-EEEcCCCCEEEEEeCC---CcEEEEEcCCCC-
Q 005956 454 QRIMI-TSEDS------KLRILD-GVDV----IHKFKGLPKSGSQMS-ASFTTTGKHIISIGDD---CRVYVWNYDELC- 516 (667)
Q Consensus 454 ~~l~~-~s~dg------~I~iwd-~~~~----~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~D---g~I~iWd~~~~~- 516 (667)
.++++ +..++ .|++|| .... ...+.. +...+.. ++|+|||++|+..+.+ +.++||+++...
T Consensus 319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred eEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 55554 56677 577787 3322 222221 2334444 6999999999876655 789999986432
Q ss_pred -ccc-ccc---ccCccceeEEccCCcEEEEecCCCC
Q 005956 517 -FPS-SKQ---KNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 517 -~~~-~~~---~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
... ... .......+.|+|||+.+++......
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 111 111 1233456799999999999766544
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.4e-19 Score=208.72 Aligned_cols=269 Identities=10% Similarity=0.034 Sum_probs=191.3
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
...|.+++|||| ++|+.+. |+.|++||+.++.
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---------------------------------------------- 112 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---------------------------------------------- 112 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE----------------------------------------------
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc----------------------------------------------
Confidence 356999999999 6666554 5999999998632
Q ss_pred ceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCC-----CeEeEEee-CCCc--------------EEEEEEeeC
Q 005956 302 LQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGC-----NQCLNVFD-HHNY--------------VTCVQFNPI 360 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~-----~~~~~~~~-h~~~--------------V~~l~f~p~ 360 (667)
...+..+...+.+++|+|+| .|++ +.|+.|++||+.+ ++...... +... +.++.|+|
T Consensus 113 ~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp- 190 (706)
T 2z3z_A 113 VTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP- 190 (706)
T ss_dssp EEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-
T ss_pred eEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-
Confidence 23344556678889999999 7776 4789999999998 77665543 2222 48999999
Q ss_pred CCCEEEEEe---------------------------------cCCeEEEEecCCCeEEEec---ccCCceEEEEEeeCCC
Q 005956 361 DDNYFISGS---------------------------------IDGKVRIWGVCEKRVVDWA---DVRDVISAICYIPDGK 404 (667)
Q Consensus 361 d~~~l~sgs---------------------------------~Dg~v~iwdl~~~~~~~~~---~~~~~v~~v~~spdg~ 404 (667)
|+++|++++ .+..|++||+.+++..... .+...+.+++|+|||+
T Consensus 191 Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC
Confidence 999999987 3467999999998876544 3556799999999999
Q ss_pred EEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc--CCCeEEEEEeCCCcEEEEECC-cceee
Q 005956 405 GFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITSEDSKLRILDGV-DVIHK 476 (667)
Q Consensus 405 ~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp--~g~~~l~~~s~dg~I~iwd~~-~~~~~ 476 (667)
.|++++.++ .|.+||+.++........... ......+..+.|+| +| +++++++.++.++||+.. +....
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD--KHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC--SSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCEE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC--CCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCEE
Confidence 999988775 899999988732222111111 11112346789999 86 788889899988888754 22222
Q ss_pred EEeCCCCCCeEE-EEEcCCCCEEEEEeCC-C----cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956 477 FKGLPKSGSQMS-ASFTTTGKHIISIGDD-C----RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 477 ~~~~~~~~~v~~-v~~spdg~~l~sgs~D-g----~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
.....+...+.. ++|+|+|+.|+.++.+ + .|+.||+.++......+. .....+.|+|||..+++...
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPE-SGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCS-SSEEEEEECTTSSEEEEEEE
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCC-CceEEEEECCCCCEEEEEec
Confidence 222235556766 7999999988766544 3 677788877654333332 33456799999999888644
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.5e-19 Score=185.98 Aligned_cols=249 Identities=13% Similarity=0.141 Sum_probs=172.2
Q ss_pred cccccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
.+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------------------------- 75 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------------------------- 75 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE----------------------------------------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE----------------------------------------
Confidence 4556778899999999 555544 68999999965321
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecC-CC--eEeEEeeCC----------CcEEEEEEeeCC
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVG-CN--QCLNVFDHH----------NYVTCVQFNPID 361 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~-~~--~~~~~~~h~----------~~V~~l~f~p~d 361 (667)
+.+..+..|...+..++|+|++ +|++++ .+++|.+|++. ++ ..+..+.+. ..+.+++|+| +
T Consensus 76 ---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-d 151 (347)
T 3hfq_A 76 ---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-D 151 (347)
T ss_dssp ---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-T
T ss_pred ---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-C
Confidence 1233444567788999999999 777777 78999999996 33 333333322 2488999999 8
Q ss_pred CCEEEEEecCCeEEEEecC-CCeEEEe----cccCCceEEEEEeeCCCEEEE-EecCCcEEEEEecC--Ccceee-eEee
Q 005956 362 DNYFISGSIDGKVRIWGVC-EKRVVDW----ADVRDVISAICYIPDGKGFIV-GSITGTCHFYKASG--NDLKLE-KVDF 432 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~-~~~~~~~----~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~~--~~~~~~-~~~~ 432 (667)
++++++...++.|++|++. ++++... ......+..++|+|||+++++ +..++.+.+|++.. +..... .+..
T Consensus 152 g~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 152 NRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp SCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 8877666678899999998 5554321 222346788999999997666 45678999999985 332211 1111
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC---cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-CcEE
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV---DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-CRVY 508 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-g~I~ 508 (667)
..........+..++|+|+|..++++...++.|.+||+. ..........+...+..++|+|||++|++++.+ +.|.
T Consensus 232 ~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 232 IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT 311 (347)
T ss_dssp SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence 110011124588999999974444666778999999976 222222222245567899999999999888765 8999
Q ss_pred EEEcC
Q 005956 509 VWNYD 513 (667)
Q Consensus 509 iWd~~ 513 (667)
+|+++
T Consensus 312 v~~~d 316 (347)
T 3hfq_A 312 LYARD 316 (347)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99654
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=6.9e-20 Score=206.64 Aligned_cols=261 Identities=11% Similarity=0.044 Sum_probs=185.8
Q ss_pred ccccEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+..+|++++|+|||++||+++. ||+++||++.++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------------------------------------- 54 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------------------------------------- 54 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------------------------------------------
Confidence 3557999999999999999887 999999998542
Q ss_pred Ccceeeeccc-cceEEEEecCCCeEEEEeC---CCcEEEEecCC---CeEeEEeeCCCcEEEEEEeeCCCC-EEEEEecC
Q 005956 300 SPLQELHGHK-GDVLDLAWSNSNYLLSCSM---DKTVRMWQVGC---NQCLNVFDHHNYVTCVQFNPIDDN-YFISGSID 371 (667)
Q Consensus 300 ~~~~~l~gh~-~~V~~l~~s~~~~l~s~s~---Dg~I~iWd~~~---~~~~~~~~h~~~V~~l~f~p~d~~-~l~sgs~D 371 (667)
....+..|. ..+..++|+|+..+++++. +...+||.+.. +... .+.....+...+|+| +++ .+++.+.+
T Consensus 55 -~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~-dg~~~~~~s~~~ 131 (582)
T 3o4h_A 55 -ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVD-TGEAVVFTGATE 131 (582)
T ss_dssp -EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEE-CSSCEEEEEECS
T ss_pred -CcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCC-CCCeEEEEecCC
Confidence 123344444 6899999999855555554 45566665533 2222 333333455678888 664 34444445
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
+.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.+++... + . .+...+..++
T Consensus 132 ~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--l--~----~~~~~~~~~~ 201 (582)
T 3o4h_A 132 DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--F--D----SGEGSFSSAS 201 (582)
T ss_dssp SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE--E--C----CSSCEEEEEE
T ss_pred CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE--e--e----cCCCccccce
Confidence 556699999998777665544 889999999999988877 789999998776532 1 1 2236789999
Q ss_pred EccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEE--------EcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 448 FSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSAS--------FTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~--------~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
|+||| +.|+++..++ .|++||+...... ....+...+..++ |+|||.++++++.|+.++||++ ++.
T Consensus 202 ~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~ 277 (582)
T 3o4h_A 202 ISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER 277 (582)
T ss_dssp ECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE
T ss_pred ECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe
Confidence 99997 6777888888 8999998754444 3333555566666 9999999999999999999999 443
Q ss_pred cccccccCccceeEEccCCcEEEEecCCC
Q 005956 518 PSSKQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 518 ~~~~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.. ........+.|+ ||.+++......
T Consensus 278 ~~--~~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 278 VE--APQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp EC--CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred ec--cCCCceEEEEec-CCEEEEEEcCCC
Confidence 32 122344567899 898887755443
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=1.8e-19 Score=217.32 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=207.9
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+.+.+|.+.+.++.|+++ .++++++.|+.++||.+...
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~----------------------------------------- 234 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD----------------------------------------- 234 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-----------------------------------------
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-----------------------------------------
Confidence 445789999999999998 77788888999999987631
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee------------CCCcEEEEEEe-eCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD------------HHNYVTCVQFN-PID 361 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~------------h~~~V~~l~f~-p~d 361 (667)
......+..|. .+..++|+|+| .|+.+ .++.|.+||+...... .+. |...+.+++|+ | +
T Consensus 235 ---g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-d 307 (1045)
T 1k32_A 235 ---GKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-D 307 (1045)
T ss_dssp ---SCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-G
T ss_pred ---CCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCC-C
Confidence 12233444454 35677999999 67766 5899999999554443 332 23468999999 9 9
Q ss_pred CCEEEEEecCCeEEEEecCCCeEEEecccCC-ceEEEEEeeCCCEEEEEecCCcEE-EEEecCCcceeeeEeeccccCcC
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVVDWADVRD-VISAICYIPDGKGFIVGSITGTCH-FYKASGNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~-~v~~v~~spdg~~l~~gs~dg~i~-l~d~~~~~~~~~~~~~~~~~~~~ 439 (667)
+++|++++ ++.|++|++.++.......+.. .+..++|+ ||+.|++++.++.+. +||+.+..... +. .+
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~--l~------~~ 377 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK--FE------EN 377 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE--CC------CC
T ss_pred CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE--ec------CC
Confidence 99888887 8899999999988877777777 89999999 999999998888888 88987654321 11 23
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC----------RVYV 509 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg----------~I~i 509 (667)
...+..++|+|+| ++|++++.++.|++||+...........|...+.+++|+|||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 4679999999996 8899999999999999875443333324777889999999999999887654 8999
Q ss_pred EEcCCCCccccccccCccceeEEccCCcEEEEecCC
Q 005956 510 WNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 510 Wd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
||+.+++.............+.|+|||+.|++....
T Consensus 457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 999987643333333444557899999999886653
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=8.1e-19 Score=182.09 Aligned_cols=251 Identities=8% Similarity=-0.011 Sum_probs=181.8
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee-cccc-ce
Q 005956 235 RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH-GHKG-DV 312 (667)
Q Consensus 235 ~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gh~~-~V 312 (667)
++|++++.++.|.+||+.++.. +..+. ++.. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~~~~~~~~~ 36 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------------------------DKVITIADAGPTP 36 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEECTTCTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------------------------EEEEEcCCCCCCc
Confidence 4899999999999999986322 22232 2221 47
Q ss_pred EEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCCC------cEEEEEEeeCCCCEEEEEe------------cCC
Q 005956 313 LDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS------------IDG 372 (667)
Q Consensus 313 ~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~d~~~l~sgs------------~Dg 372 (667)
..++|+|++ .+ +++..++.|.+||+.+++.+..+.... .+.+++|+| ++++++++. .++
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCC
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCc
Confidence 789999998 54 566678899999999999888776433 677899999 898888886 579
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
.|.+||+.+++..........+..++|+|+|++++++ ++.|.+||+.+.+.... +..... .. .+.|+|++
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~-~~~~~~----~~---~~~~s~dg 185 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED-KPIQSW----EA---ETYAQPDV 185 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE-ECSTTT----TT---TTBCCCBC
T ss_pred eEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee-eecccc----CC---CceeCCCc
Confidence 9999999998887655556678899999999988888 68999999987765322 211110 11 22678886
Q ss_pred CeEEEEEeCCC-----------------------cEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956 453 SQRIMITSEDS-----------------------KLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 508 (667)
Q Consensus 453 ~~~l~~~s~dg-----------------------~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~ 508 (667)
..+++++..++ .|.+||+..... ......+...+..++|+|+|++|+++ ++.|+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 43333332333 468999875332 22222355678899999999999988 79999
Q ss_pred EEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 509 VWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
+||+.+++.............+.|+|||..++++.
T Consensus 264 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred EEECCCCcCcceecCCCceeeEEECCCCCEEEEEc
Confidence 99999886544433334455679999999888873
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=7.6e-19 Score=182.30 Aligned_cols=237 Identities=9% Similarity=0.011 Sum_probs=174.8
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 224 ~I~~v~fspdg~~La-tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
.+..++|+|+|++|+ ++..++.|.+||+.++...
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------------------------------------- 69 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--------------------------------------------- 69 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------------------------
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------------------------
Confidence 478899999998665 5556789999999864321
Q ss_pred eeee-c----cccceEEEEecCCC-eEEEEe------------CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCE
Q 005956 303 QELH-G----HKGDVLDLAWSNSN-YLLSCS------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 303 ~~l~-g----h~~~V~~l~~s~~~-~l~s~s------------~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~ 364 (667)
..+. + |...+.+++|+|++ +|+++. .++.|.+||+.+++.+..+.....+.+++|+| ++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~ 148 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSK 148 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSC
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCE
Confidence 1111 1 23357789999999 777775 57999999999999888887777788999999 8888
Q ss_pred EEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC------------------------cEEEEEe
Q 005956 365 FISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG------------------------TCHFYKA 420 (667)
Q Consensus 365 l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg------------------------~i~l~d~ 420 (667)
|+++ ++.|++||+.+++.............+.|+|+|+.+++.+..+ .|.+||+
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8877 6889999999998775433322112337899998776654332 4689999
Q ss_pred cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
.+.+.. .+.+.. +...+.+++|+|+| ++++++ ++.|++||+.......... ....+.+++|+|+|++|++
T Consensus 227 ~~~~~~--~~~~~~----~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 227 ETGEMA--MREVRI----MDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp TTCCEE--EEEEEE----CSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred CCCCce--EeecCC----CCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEE
Confidence 887664 222221 23568899999997 666666 7999999987543322221 2346789999999999999
Q ss_pred EeCCCcEEEEEcCCCCcc
Q 005956 501 IGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 501 gs~Dg~I~iWd~~~~~~~ 518 (667)
++.++.|++||+.+++..
T Consensus 297 ~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 297 GGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ESBSSEEEEEETTTCCEE
T ss_pred EcCCCcEEEEECcCCcEE
Confidence 999999999999987643
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=1.1e-18 Score=185.54 Aligned_cols=280 Identities=12% Similarity=0.081 Sum_probs=187.5
Q ss_pred eeeccccccEEE-----EEEcCCCCEEEEEEC-CCc--EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCce
Q 005956 216 QEIQAHKGCIWT-----LKFSPDGRYLASGGE-DGV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVP 287 (667)
Q Consensus 216 ~~l~~H~~~I~~-----v~fspdg~~Latgs~-Dg~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (667)
..|..|.+.... .+|||||++||.++. +|. |.+||+.++..
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------------------------------- 72 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA------------------------------- 72 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-------------------------------
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-------------------------------
Confidence 345566666666 889999999999988 674 77777765322
Q ss_pred eecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEE--EeeCCCC
Q 005956 288 VVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQ--FNPIDDN 363 (667)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~--f~p~d~~ 363 (667)
.....+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +...+.... ++| ++.
T Consensus 73 --------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~ 137 (388)
T 3pe7_A 73 --------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCT 137 (388)
T ss_dssp --------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSS
T ss_pred --------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCC
Confidence 22233455555567899999 89999999999999999998877765 344444344 477 888
Q ss_pred EEEEEe----------------------cCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecCC------c
Q 005956 364 YFISGS----------------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSITG------T 414 (667)
Q Consensus 364 ~l~sgs----------------------~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg------~ 414 (667)
+++... .+..|++||+.+++...+..+...+..++|+| ||+.|+....++ .
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 877432 34679999999998888777778899999999 999998877643 6
Q ss_pred EEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC----cEEEEECCccee-eE-EeCCCCC---C
Q 005956 415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS----KLRILDGVDVIH-KF-KGLPKSG---S 485 (667)
Q Consensus 415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg----~I~iwd~~~~~~-~~-~~~~~~~---~ 485 (667)
|.++|+.+...... ... .....+..+.|+|||..+++++..++ .|++||+..... .+ ....+.. .
T Consensus 218 l~~~d~~~~~~~~l----~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 218 MWLINEDGTNMRKV----KTH--AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp EEEEETTSCCCEES----CCC--CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred EEEEeCCCCceEEe----eeC--CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence 77777765443211 110 00124778899999854545444333 399999874332 12 2111000 0
Q ss_pred eEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCCCccccccccC-----------ccceeEEccCCcEEEEecCC
Q 005956 486 QMSASFTTTGKHIISI---------GDDCRVYVWNYDELCFPSSKQKNS-----------VRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 486 v~~v~~spdg~~l~sg---------s~Dg~I~iWd~~~~~~~~~~~~~~-----------~~~~~~fs~dg~~lav~w~~ 545 (667)
...++|+|||++|+.. ..+..|++||+.+++......... ......|+|||+.|++....
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 1123689999988854 456789999999876543332222 34567999999999987654
Q ss_pred CC
Q 005956 546 IG 547 (667)
Q Consensus 546 ~~ 547 (667)
.+
T Consensus 372 ~g 373 (388)
T 3pe7_A 372 HG 373 (388)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1e-18 Score=189.70 Aligned_cols=259 Identities=15% Similarity=0.155 Sum_probs=171.6
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
+...++.+++++++.+|++|+.|+ |+||+........ ... .....+. ...
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~---~~~------~~~~~~~--------------------~~~ 84 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN---KPG------DDPNKIV--------------------DKV 84 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC---CTT------CCTTCEE--------------------ECC
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc---ccc------cCccccc--------------------ccC
Confidence 344688999999999999999998 9999875311000 000 0000000 011
Q ss_pred cceeeeccccceEEEEecCCC-eEE----EEeCCCcEEEEecCCC--------eE---eEEe-eCCCcEEEEEEeeCCCC
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLL----SCSMDKTVRMWQVGCN--------QC---LNVF-DHHNYVTCVQFNPIDDN 363 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~----s~s~Dg~I~iWd~~~~--------~~---~~~~-~h~~~V~~l~f~p~d~~ 363 (667)
+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.++ +. +..+ .|...|.+++|+|.+++
T Consensus 85 ~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 163 (434)
T 2oit_A 85 QGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163 (434)
T ss_dssp CCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT
T ss_pred cccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC
Confidence 1112 2467789999999999 777 7888999999998654 22 2333 38899999999994489
Q ss_pred EEEEEecCCeEEEEecCCCeEE-EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-CcCCC
Q 005956 364 YFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGN 441 (667)
Q Consensus 364 ~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~ 441 (667)
+|++++.||+|++||++++... ....|...|++++|+|+|++|++|+.||.|++||++ ..... .+..+... ..|..
T Consensus 164 ~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~-~~~~~~~~~~~~~~ 241 (434)
T 2oit_A 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK-VIPCPPFYESDHPV 241 (434)
T ss_dssp EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE-EECCCTTCCTTSCE
T ss_pred EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc-cccCCcccCCCCce
Confidence 9999999999999999988654 355678899999999999999999999999999998 33221 22211111 11234
Q ss_pred CeEEEEEccCCCeEEEE-EeCCC------cEEEEECCcc----eeeEEeC--------CCCCCeEEEEEcCCCCEEEEEe
Q 005956 442 KITGIQFSRDESQRIMI-TSEDS------KLRILDGVDV----IHKFKGL--------PKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~-~s~dg------~I~iwd~~~~----~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs 502 (667)
.|.+++|++++ .++++ +..+| .+++|++.+. ...+... ....+...+.+-++.+++++++
T Consensus 242 ~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s 320 (434)
T 2oit_A 242 RVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAAS 320 (434)
T ss_dssp EEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEE
T ss_pred eEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEec
Confidence 79999999985 44443 44443 3899998643 1222221 1122223334446777766655
Q ss_pred C-CCcEEEEEcC
Q 005956 503 D-DCRVYVWNYD 513 (667)
Q Consensus 503 ~-Dg~I~iWd~~ 513 (667)
. .+.|.|....
T Consensus 321 ~~s~dv~vl~~~ 332 (434)
T 2oit_A 321 AASTEVSILARQ 332 (434)
T ss_dssp TTCSBCEEEEEC
T ss_pred CCCCceeEEEec
Confidence 4 4456666644
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=4.8e-17 Score=171.54 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=168.9
Q ss_pred ccccEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccc
Q 005956 221 HKGCIWTLKFSPDGRYLASGGED----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQ 296 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~D----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (667)
|......++|+|||++|++++.+ +.|.+|++.... +.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------------------g~--------------------- 88 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------------------GT--------------------- 88 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------------------TE---------------------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------------------Cc---------------------
Confidence 66778889999999999999986 799999987410 00
Q ss_pred ccCCcceeeeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeE----EeeC-----------CCcEEEEEEee
Q 005956 297 IEESPLQELHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLN----VFDH-----------HNYVTCVQFNP 359 (667)
Q Consensus 297 ~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~----~~~h-----------~~~V~~l~f~p 359 (667)
...+.....+......+++ ++ +|++++ .+++|.+|++.....+. ...+ ...+.+++|+|
T Consensus 89 --~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 89 --LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp --EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred --EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 0112333345556777888 55 555555 68899999997543221 1111 23468899999
Q ss_pred CCCCEEEEEe-cCCeEEEEecCCCe-------E-------EEecccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCC
Q 005956 360 IDDNYFISGS-IDGKVRIWGVCEKR-------V-------VDWADVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGN 423 (667)
Q Consensus 360 ~d~~~l~sgs-~Dg~v~iwdl~~~~-------~-------~~~~~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~ 423 (667)
+++++++++ .++.|.+|++.... + .........+..++|+|||+++++++ .++.|.+|++.++
T Consensus 165 -dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 165 -DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp -TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred -CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 888666555 47899999887533 1 22234456688999999999888877 6899999999866
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECC----cceeeEEeCCCCCCeEEEEEcCCCCE
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGV----DVIHKFKGLPKSGSQMSASFTTTGKH 497 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~----~~~~~~~~~~~~~~v~~v~~spdg~~ 497 (667)
...... ... ....+......++|+|+| ++|+++.. ++.|.+|++. ......... ....+..++|+|||++
T Consensus 244 ~~~~~~-~~~-~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 244 MLDEIQ-TVA-ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-TGIHPRNFIITPNGKY 319 (361)
T ss_dssp EEEEEE-EEE-SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred ceEEeE-EEe-cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-CCCCCceEEECCCCCE
Confidence 543221 111 111223456899999997 56655554 5899999975 221222222 2456789999999999
Q ss_pred EEEEe-CCCcEEEEEcC--CCCc
Q 005956 498 IISIG-DDCRVYVWNYD--ELCF 517 (667)
Q Consensus 498 l~sgs-~Dg~I~iWd~~--~~~~ 517 (667)
|++++ .++.|.+|+++ +++.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEECCCCCEEEEEEECCCCcE
Confidence 99887 57899997654 5544
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=204.92 Aligned_cols=269 Identities=9% Similarity=0.013 Sum_probs=179.0
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (667)
Q Consensus 227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (667)
.++|+|||++++++ .|+.|++||+.++.. ...+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---------------------------------------------~~~~~ 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---------------------------------------------YTILS 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE---------------------------------------------EEEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---------------------------------------------EEEEc
Confidence 68999999766654 699999999986322 23333
Q ss_pred cccc---ceEEEEecCCC-eEEEEeC---------CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 307 GHKG---DVLDLAWSNSN-YLLSCSM---------DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 307 gh~~---~V~~l~~s~~~-~l~s~s~---------Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
+|.. .|.+++||||| +|++++. +++|++||+.+++.+........+..++|+| |++.|+++. ++.
T Consensus 54 ~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SP-DG~~la~~~-~~~ 131 (719)
T 1z68_A 54 NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSP-VGSKLAYVY-QNN 131 (719)
T ss_dssp HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECS-STTCEEEEE-TTE
T ss_pred cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECC-CCCEEEEEE-CCe
Confidence 3433 48999999999 7887766 7899999999998732222345788999999 999999885 789
Q ss_pred EEEEecCCCeEEEecc--cCCce-----------------EEEEEeeCCCEEEEEecCC---------------------
Q 005956 374 VRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG--------------------- 413 (667)
Q Consensus 374 v~iwdl~~~~~~~~~~--~~~~v-----------------~~v~~spdg~~l~~gs~dg--------------------- 413 (667)
|++||+.+++...+.. +...+ .+++|+|||+.|++++.+.
T Consensus 132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 9999999887665432 22212 5899999999999988652
Q ss_pred -------------cEEEEEecCCccee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEE----CC
Q 005956 414 -------------TCHFYKASGNDLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILD----GV 471 (667)
Q Consensus 414 -------------~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d----g~I~iwd----~~ 471 (667)
.|++||+.++.... ..+........+...+..++|+||+ +++++.... ..|++|| ..
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence 67889988765420 0111100011245678999999995 666664322 2488899 65
Q ss_pred cce--eeEE--eCCCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEEcCCCCccccccccCccceeEEccCCcE
Q 005956 472 DVI--HKFK--GLPKSGSQM-----SASFTTTGKHIIS--IGDDC--RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVS 538 (667)
Q Consensus 472 ~~~--~~~~--~~~~~~~v~-----~v~~spdg~~l~s--gs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~ 538 (667)
... ..+. ...+...+. .+.|+|||+.|+. ...+| .|++|++.++................++ ++..
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~ 369 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDS 369 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSE
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCE
Confidence 322 2221 012445554 7899999996654 44555 5777788776543333333333334555 7877
Q ss_pred EEEecCC
Q 005956 539 VAVQWPG 545 (667)
Q Consensus 539 lav~w~~ 545 (667)
+++....
T Consensus 370 i~~~~~~ 376 (719)
T 1z68_A 370 LFYSSNE 376 (719)
T ss_dssp EEEEESC
T ss_pred EEEEEec
Confidence 7776654
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=4.4e-18 Score=196.26 Aligned_cols=259 Identities=15% Similarity=0.164 Sum_probs=179.6
Q ss_pred eeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCC-----CceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 217 EIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTS-----VAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
.+..|.+.+.+++|||||++||++ .|+.|++|++.+ +....+....... +.
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---------~~-------------- 170 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---------LV-------------- 170 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---------EE--------------
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---------eE--------------
Confidence 344677789999999999999995 679999999986 4332111000000 00
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEe---------------------------------CCCcEEEEec
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCS---------------------------------MDKTVRMWQV 337 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s---------------------------------~Dg~I~iWd~ 337 (667)
.+.+ ....+...+.++.|+||| +|++++ .+..|++||+
T Consensus 171 ------~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 171 ------YGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp ------ESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred ------cccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 0000 112233457889999999 888877 4468999999
Q ss_pred CCCeEeEEe---eCCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCC-eEEEecc--cCC---ceEEEEEee--
Q 005956 338 GCNQCLNVF---DHHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEK-RVVDWAD--VRD---VISAICYIP-- 401 (667)
Q Consensus 338 ~~~~~~~~~---~h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~-~~~~~~~--~~~---~v~~v~~sp-- 401 (667)
.+++..... .|...+.+++|+| +++.|++++.++ .|++||+.++ ....... ... .+..++|+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~ 321 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS 321 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred CCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence 998876655 3667899999999 999999988776 8999999998 4443321 221 246789999
Q ss_pred CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEE-EEEccCCCeEEEEEeCCC----cEEEEECCcceee
Q 005956 402 DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDS----KLRILDGVDVIHK 476 (667)
Q Consensus 402 dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~-l~~sp~g~~~l~~~s~dg----~I~iwd~~~~~~~ 476 (667)
||++++++..+|.+++|++.........+. .+...+.. ++|+|+|..++++++.++ .|+.||......
T Consensus 322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~- 394 (706)
T 2z3z_A 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVT------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT- 394 (706)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSCEEEECC------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-
T ss_pred CCEEEEEEccCCccEEEEEECCCCEEEecC------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-
Confidence 999999999999999998873222222221 12355766 799999755555566555 677777654322
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC
Q 005956 477 FKGLPKSGSQMSASFTTTGKHIISIGDD----CRVYVWNYDELC 516 (667)
Q Consensus 477 ~~~~~~~~~v~~v~~spdg~~l~sgs~D----g~I~iWd~~~~~ 516 (667)
....+...+.+++|+|||++|+.+..+ +.|++||+.+++
T Consensus 395 -~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 395 -KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 222256678999999999998877544 469999998875
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=3.8e-17 Score=171.26 Aligned_cols=234 Identities=14% Similarity=0.122 Sum_probs=158.3
Q ss_pred ccccceEEEEecCCCeEEEEeC---CCcEEEEecCCCeE--eEE-eeCCCcEEEEEEeeCCCCEEEEEe-cCCeEEEEec
Q 005956 307 GHKGDVLDLAWSNSNYLLSCSM---DKTVRMWQVGCNQC--LNV-FDHHNYVTCVQFNPIDDNYFISGS-IDGKVRIWGV 379 (667)
Q Consensus 307 gh~~~V~~l~~s~~~~l~s~s~---Dg~I~iWd~~~~~~--~~~-~~h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~iwdl 379 (667)
.+...+..++|+|++.|++++. ++.|.+|++.+++. +.. ..+...+..++|+| ++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 4456778899999995554443 68999999987763 333 23677888999999 999888887 6799999999
Q ss_pred C-CCeEE--Eeccc----------CCceEEEEEeeCCCEEEEEecCCcEEEEEec-CCcceee-eEeeccccCcCCCCeE
Q 005956 380 C-EKRVV--DWADV----------RDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDLKLE-KVDFHDRKKTSGNKIT 444 (667)
Q Consensus 380 ~-~~~~~--~~~~~----------~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~-~~~~~~~-~~~~~~~~~~~~~~I~ 444 (667)
. ++... ..... ...+.+++|+|+|+.+++...++.|.+|++. ++.+... .+... ....+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-----~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-----AGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----TTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-----CCCCCc
Confidence 5 33322 21111 1248889999999966666678899999998 3433221 11111 124678
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCc--ce----eeEEeCCC----CCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVD--VI----HKFKGLPK----SGSQMSASFTTTGKHII-SIGDDCRVYVWNYD 513 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~----~~~~~~~~----~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~ 513 (667)
.++|+|+|..++++...++.|.+|++.. .. ..+..... ...+..++|+|||++|+ +...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999744555567788999998652 21 12222111 14588899999999885 45568999999997
Q ss_pred CC-Cccc--cccc-cCccceeEEccCCcEEEEecCCC
Q 005956 514 EL-CFPS--SKQK-NSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 514 ~~-~~~~--~~~~-~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
.. .... .... ......++|+|||++|+++....
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 32 2111 1111 22345679999999988876544
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=6.1e-18 Score=176.54 Aligned_cols=237 Identities=9% Similarity=-0.018 Sum_probs=170.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (667)
Q Consensus 227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (667)
.++++++++++++++.++.|.+||+.++.. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------------------------~~~~~ 38 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------------------------YKSCV 38 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------------------------EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------------------------EEEEe
Confidence 457889999999999999999999986322 22333
Q ss_pred ccc-cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEeeCC-------CcEEEEEEeeCCCCEEEEEecC-----
Q 005956 307 GHK-GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFDHH-------NYVTCVQFNPIDDNYFISGSID----- 371 (667)
Q Consensus 307 gh~-~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~h~-------~~V~~l~f~p~d~~~l~sgs~D----- 371 (667)
.+. ..+..++|+|++ ++ +++..++.|.+||+.+++.+..+... ..+.+++|+| +++++++++.+
T Consensus 39 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 39 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN 117 (349)
T ss_dssp CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccc
Confidence 222 247789999998 44 45667899999999999988777532 2378899999 99999988865
Q ss_pred -------CeEEEEecCCCeE---EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-----
Q 005956 372 -------GKVRIWGVCEKRV---VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK----- 436 (667)
Q Consensus 372 -------g~v~iwdl~~~~~---~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~----- 436 (667)
+.|.+||+.+++. +....+...+.+++|+|+|+ +++++ +.|.+||+.+++.... +......
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~-~~~~~~~~~~~~ 193 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVA-LPLRNWNRKGYS 193 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEE-ECSTTCCCTTBC
T ss_pred cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceecc-ccccccCCcccc
Confidence 8999999988543 23334445688999999999 66653 4499999987654322 1111000
Q ss_pred ---------------------------------------------------------CcCCCCeEEEEEcc-CCCeEEEE
Q 005956 437 ---------------------------------------------------------KTSGNKITGIQFSR-DESQRIMI 458 (667)
Q Consensus 437 ---------------------------------------------------------~~~~~~I~~l~~sp-~g~~~l~~ 458 (667)
......+..++|+| ++ +++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~ 272 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYG 272 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEE
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEE
Confidence 00112456778889 86 56666
Q ss_pred EeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 459 TSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+ ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++.
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred E--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 6 8899999987644322221 234567899999999999988899999999988754
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=3.5e-17 Score=177.55 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=146.1
Q ss_pred cccccEEEEEEcCCCCEEE----EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 220 AHKGCIWTLKFSPDGRYLA----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~La----tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.|.+.|++++|+|+|++|| +|+.|+.|+|||+.+..... .. . .+
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-------------~~------------~-----~~-- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-------------KQ------------Q-----KR-- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-------------CS------------S-----CC--
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-------------cC------------C-----cc--
Confidence 4678999999999999999 88899999999987520000 00 0 00
Q ss_pred cccCCcceeeeccccceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCC
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDG 372 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg 372 (667)
....+..+.+|...|.+++|+|+ + +|++++.||+|++||+.++..+... .|...|++++|+| ++++|++|+.||
T Consensus 138 --~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg 214 (434)
T 2oit_A 138 --PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNG 214 (434)
T ss_dssp --CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTS
T ss_pred --eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCC
Confidence 00113456789999999999997 5 8999999999999999988665443 4888999999999 899999999999
Q ss_pred eEEEEecCCCeEEEecc-------cCCceEEEEEeeCCCEEEEE-ecCC------cEEEEEecCCcce--eeeEeecccc
Q 005956 373 KVRIWGVCEKRVVDWAD-------VRDVISAICYIPDGKGFIVG-SITG------TCHFYKASGNDLK--LEKVDFHDRK 436 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~-------~~~~v~~v~~spdg~~l~~g-s~dg------~i~l~d~~~~~~~--~~~~~~~~~~ 436 (667)
+|++||++......... +...+.+++|++++.++++. ..+| .+++|+++..... .....+....
T Consensus 215 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~ 294 (434)
T 2oit_A 215 TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPC 294 (434)
T ss_dssp CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSS
T ss_pred cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCC
Confidence 99999998332222222 22379999999988776553 3443 3899999865322 1111111110
Q ss_pred C---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 437 K---TSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 437 ~---~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
. ....+...+.+.++....+++.+..+.|.|+.
T Consensus 295 ~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 295 YGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp CCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 0 11122334445566544444555555666665
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=4.6e-18 Score=197.38 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=179.0
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
...+++|+|||++|+++ ||.|++||+.++... .
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------------------------~ 50 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------------------------V 50 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------------------------E
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------------------------E
Confidence 35689999999999997 999999999875432 2
Q ss_pred eeecccc-----ceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 304 ELHGHKG-----DVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 304 ~l~gh~~-----~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.+.+|.. ...+++||||| +|+.++.+ +.+.+||+.++++.....+...+...+|+| |++.|+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SP-dG~~la~~ 129 (740)
T 4a5s_A 51 FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP-VGHKLAYV 129 (740)
T ss_dssp EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-STTCEEEE
T ss_pred EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECC-CCCEEEEE
Confidence 2333332 23458899999 78887776 556799999999877666788999999999 99999888
Q ss_pred ecCCeEEEEecCCCeEEEecc--cCCce-----------------EEEEEeeCCCEEEEEecCC----------------
Q 005956 369 SIDGKVRIWGVCEKRVVDWAD--VRDVI-----------------SAICYIPDGKGFIVGSITG---------------- 413 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~--~~~~v-----------------~~v~~spdg~~l~~gs~dg---------------- 413 (667)
. ++.|++||+.+++...+.. ....+ .++.|+|||+.|+.++.|.
T Consensus 130 ~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 130 W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 4 7899999999887665432 22212 3589999999999876432
Q ss_pred --------------------cEEEEEecC---Ccc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eC---CCcE
Q 005956 414 --------------------TCHFYKASG---NDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SE---DSKL 465 (667)
Q Consensus 414 --------------------~i~l~d~~~---~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~---dg~I 465 (667)
.|++||+.+ +.. ....+........+...+..++|+||| +.++.. .. +..|
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i 287 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVM 287 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEE
Confidence 366677765 421 111111100000134668999999997 544443 22 2379
Q ss_pred EEEECCcce--------eeEEeCCCCCCe-----EEEEEcCCCCEEE-EEeCC---CcEEEEEcCCCCccccccccCccc
Q 005956 466 RILDGVDVI--------HKFKGLPKSGSQ-----MSASFTTTGKHII-SIGDD---CRVYVWNYDELCFPSSKQKNSVRS 528 (667)
Q Consensus 466 ~iwd~~~~~--------~~~~~~~~~~~v-----~~v~~spdg~~l~-sgs~D---g~I~iWd~~~~~~~~~~~~~~~~~ 528 (667)
++||+.... ..+....+...+ ..++|+|||+.|+ ..++. ..|++||+.++.............
T Consensus 288 ~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~ 367 (740)
T 4a5s_A 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI 367 (740)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEE
T ss_pred EEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEE
Confidence 999965422 222112234333 3688999999887 66543 478999998876654443333332
Q ss_pred eeEEccCCcEEEEecCC
Q 005956 529 CEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 529 ~~~fs~dg~~lav~w~~ 545 (667)
. .+.+|+..++.....
T Consensus 368 ~-~~~~d~~~i~f~~~~ 383 (740)
T 4a5s_A 368 G-IEALTSDYLYYISNE 383 (740)
T ss_dssp E-EEEECSSEEEEEESC
T ss_pred E-EEEEeCCEEEEEEec
Confidence 2 233557766665554
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=1.1e-16 Score=167.37 Aligned_cols=227 Identities=7% Similarity=0.050 Sum_probs=169.6
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 223 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latg-s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
..+..++|+|+|++|+.+ ..++.|.+||..++...
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~-------------------------------------------- 124 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK-------------------------------------------- 124 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------------------------------------
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE--------------------------------------------
Confidence 346789999999966555 55799999999874332
Q ss_pred ceeeecc---------ccceEEEEecCCC-eEEEEe--CCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEE
Q 005956 302 LQELHGH---------KGDVLDLAWSNSN-YLLSCS--MDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 302 ~~~l~gh---------~~~V~~l~~s~~~-~l~s~s--~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sg 368 (667)
..+..+ ...+.+++|+|++ +++.++ .++.|.+||+.+++.+..+. +...+.+++|+| ++++++++
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~ 202 (353)
T 3vgz_A 125 -GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTT 202 (353)
T ss_dssp -EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEE
T ss_pred -EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEE
Confidence 112111 1236889999998 666554 47899999999999998887 666789999999 99999999
Q ss_pred ecCCeEEEEecCCCeEEEecc-----cCCceEEEEEeeCCCEEEEEecC-CcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 369 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIPDGKGFIVGSIT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~-----~~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
+.++.|.+||+.+++...... +...+..++|+|+|+.+++++.+ +.|.+||+.+.+.... +... .
T Consensus 203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~-------~- 273 (353)
T 3vgz_A 203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK-VAAP-------E- 273 (353)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE-EECS-------S-
T ss_pred cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE-EEcC-------C-
Confidence 999999999999998775332 34568889999999988777654 8999999987765432 2221 1
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
...++|+|+|..++++...++.|.+||..+........ ....+.+++|+|+|++|+++..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 25689999975455555579999999987544332222 345788999999999888776654
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.5e-16 Score=168.39 Aligned_cols=248 Identities=8% Similarity=0.025 Sum_probs=166.5
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcC-CCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVT-SVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
+...+..++|+|||++|++++.+ .|.+|++. ++....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----------------------------------------- 75 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----------------------------------------- 75 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-----------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-----------------------------------------
Confidence 33467889999999999999988 99999986 422110
Q ss_pred CcceeeeccccceEEEEecCCC-e-E-EEEe-------------CCCcEEEEecC-CCeEeEEee-----CCCcEEEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-Y-L-LSCS-------------MDKTVRMWQVG-CNQCLNVFD-----HHNYVTCVQF 357 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~-l-~s~s-------------~Dg~I~iWd~~-~~~~~~~~~-----h~~~V~~l~f 357 (667)
+.....+ +.+.+++|+|++ + + +++. .++++.+|++. .++....+. +...+.+++|
T Consensus 76 --~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (365)
T 1jof_A 76 --EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF 152 (365)
T ss_dssp --EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE
T ss_pred --eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE
Confidence 0111111 124458899999 3 3 3442 68999999997 465544332 4568999999
Q ss_pred eeCCCCEEEEEec-CCeEEEEecC-CCeEEEe--c---ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEecC--Cccee
Q 005956 358 NPIDDNYFISGSI-DGKVRIWGVC-EKRVVDW--A---DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKASG--NDLKL 427 (667)
Q Consensus 358 ~p~d~~~l~sgs~-Dg~v~iwdl~-~~~~~~~--~---~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~~--~~~~~ 427 (667)
+| ++++++++.. ++.|++||+. +++.... . .+...+..++|+|||+++++++. ++.+.+|++.. +++..
T Consensus 153 sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 153 DP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 99 9998887664 6799999998 6765321 1 12456899999999999988775 68999998763 33321
Q ss_pred --eeEee-ccccCcCCC------CeEEEE-EccCCCeEEEEEeCC-C-----cEEEEECC-cceee--EE-eCCCCCCeE
Q 005956 428 --EKVDF-HDRKKTSGN------KITGIQ-FSRDESQRIMITSED-S-----KLRILDGV-DVIHK--FK-GLPKSGSQM 487 (667)
Q Consensus 428 --~~~~~-~~~~~~~~~------~I~~l~-~sp~g~~~l~~~s~d-g-----~I~iwd~~-~~~~~--~~-~~~~~~~v~ 487 (667)
..+.. ......+.. .+..++ |+||| ++|++++.+ + .|.+|++. +.... .. ...+...+.
T Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH 310 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred ccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence 11111 110011111 588999 99997 566665432 3 89999975 22211 11 111334456
Q ss_pred EEEEcC---CCCEEEEEeCC-CcEEEEEcCCC
Q 005956 488 SASFTT---TGKHIISIGDD-CRVYVWNYDEL 515 (667)
Q Consensus 488 ~v~~sp---dg~~l~sgs~D-g~I~iWd~~~~ 515 (667)
.++|+| ||++|++++.+ +.|.||+++..
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 789999 89999999865 89999999765
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=4.5e-16 Score=162.26 Aligned_cols=218 Identities=9% Similarity=0.059 Sum_probs=157.4
Q ss_pred EEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEE-EEEecCCeEEEEecCCCeEEEecc
Q 005956 314 DLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYF-ISGSIDGKVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 314 ~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l-~sgs~Dg~v~iwdl~~~~~~~~~~ 389 (667)
.+++++++ ++++++.+++|++||+.+++.+..+.... .+..++|+| +++++ +++..++.|.+||+.+++......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 34677777 88899999999999999999988887554 688999999 88765 455578999999999988765433
Q ss_pred c-------CCceEEEEEeeCCCEEEEEecC------------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 390 V-------RDVISAICYIPDGKGFIVGSIT------------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 390 ~-------~~~v~~v~~spdg~~l~~gs~d------------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
. ...+..++|+|+|+++++++.+ +.|.+||+.+++.......... ...+.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~s~ 157 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----PRQVYLMRAAD 157 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----CSSCCCEEECT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----CCcccceeECC
Confidence 2 2237889999999999998866 8999999987543222111111 24588899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcce--eeEEeCC-----------------------------------------------
Q 005956 451 DESQRIMITSEDSKLRILDGVDVI--HKFKGLP----------------------------------------------- 481 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~----------------------------------------------- 481 (667)
+| + +++++. .|++||..+.. ..+....
T Consensus 158 dg-~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 DG-S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TS-C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CC-c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 97 4 555543 49999976432 2221110
Q ss_pred -------------------CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCccccccccCccceeEEccCCcEEEE
Q 005956 482 -------------------KSGSQMSASFTT-TGKHIISIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 482 -------------------~~~~v~~v~~sp-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav 541 (667)
+...+..++|+| +|++|+++ ++.|++||+.+++.............+.|+|||..|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE
Confidence 011345678889 99999988 88999999998875443333333456799999998888
Q ss_pred ec
Q 005956 542 QW 543 (667)
Q Consensus 542 ~w 543 (667)
+.
T Consensus 312 ~~ 313 (349)
T 1jmx_B 312 GG 313 (349)
T ss_dssp ES
T ss_pred ec
Confidence 53
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=1e-16 Score=170.50 Aligned_cols=267 Identities=10% Similarity=0.078 Sum_probs=174.9
Q ss_pred ccEEEEEEcCCCCEEEEEECC---CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 223 GCIWTLKFSPDGRYLASGGED---GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~D---g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
..+..++|||||++||.+... ..|.+|++.++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------------------------- 72 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------------------------- 72 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-------------------------------------------
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-------------------------------------------
Confidence 337788999999998887653 3677778775321
Q ss_pred Ccceeeeccccc-eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEE-------------------EEE
Q 005956 300 SPLQELHGHKGD-VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTC-------------------VQF 357 (667)
Q Consensus 300 ~~~~~l~gh~~~-V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~-------------------l~f 357 (667)
..+..+... ...+.|+|++ .|+.++.++.|++||+.+++....+. +...... +.|
T Consensus 73 ---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 149 (396)
T 3c5m_A 73 ---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW 149 (396)
T ss_dssp ---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred ---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence 111122222 3337899999 88899999999999999988776665 3332222 245
Q ss_pred eeCCCCEEEEE-----ecCCeEEEEecCCCeEEEecccCCceEEEEEee-CCCEEEEEecC------CcEEEEEecCCcc
Q 005956 358 NPIDDNYFISG-----SIDGKVRIWGVCEKRVVDWADVRDVISAICYIP-DGKGFIVGSIT------GTCHFYKASGNDL 425 (667)
Q Consensus 358 ~p~d~~~l~sg-----s~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~d------g~i~l~d~~~~~~ 425 (667)
+| +++.++.+ ..+..|++||+.+++......+...+..+.|+| +|+.|+..+.+ ..|.+||+.+...
T Consensus 150 sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 150 QP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred CC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 66 55555443 356689999999988777667777899999999 88878776654 3577888765443
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC----CcEEEEECCccee-eEEeCCCCCCeEEEEEcC-CCCEEE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED----SKLRILDGVDVIH-KFKGLPKSGSQMSASFTT-TGKHII 499 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d----g~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp-dg~~l~ 499 (667)
... ... .....+..+.|+|+|..+++++..+ +.|++||+..... .+... . ... +.|+| ||++|+
T Consensus 229 ~~l----~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 229 RKI----KEH--AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMV 298 (396)
T ss_dssp EES----SCC--CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEE
T ss_pred eEe----ecc--CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEE
Confidence 211 100 0013578899999974444443322 3499999864322 22221 1 123 88999 999988
Q ss_pred EEe----------------CCCcEEEEEcCCCCccccccccC-----------ccceeEEccCCcEEEEecCCC
Q 005956 500 SIG----------------DDCRVYVWNYDELCFPSSKQKNS-----------VRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 500 sgs----------------~Dg~I~iWd~~~~~~~~~~~~~~-----------~~~~~~fs~dg~~lav~w~~~ 546 (667)
+++ .+..|++||+.++.......... ......|+|||..|++.....
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 765 34789999998876533322221 134468999999998876544
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=4.5e-15 Score=156.32 Aligned_cols=235 Identities=10% Similarity=0.076 Sum_probs=154.5
Q ss_pred cccceEEEEecCCC-eEEEEeCC----CcEEEEecCC--CeEe--EEee-CCCcEEEEEEeeCCCCEEEEEe-cCCeEEE
Q 005956 308 HKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGC--NQCL--NVFD-HHNYVTCVQFNPIDDNYFISGS-IDGKVRI 376 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~D----g~I~iWd~~~--~~~~--~~~~-h~~~V~~l~f~p~d~~~l~sgs-~Dg~v~i 376 (667)
|...+..++|+|++ +|++++.+ +.|.+|++.. ++.. .... +......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 66778889999999 78888875 7999998865 4433 2333 4556777777 567666665 5789999
Q ss_pred EecCCCeEE-Ee---cc-----------cCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcc----e-eeeE-eecc
Q 005956 377 WGVCEKRVV-DW---AD-----------VRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDL----K-LEKV-DFHD 434 (667)
Q Consensus 377 wdl~~~~~~-~~---~~-----------~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~----~-~~~~-~~~~ 434 (667)
|++.....+ .. .. ....+.+++|+|+|++++++. .++.+.+|++..... . .... ....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999753321 11 01 122358899999999776655 478999999986542 1 1100 0000
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcce----eeEEe-CCCCCCeEEEEEcCCCCEEEEEeCC--Cc
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVI----HKFKG-LPKSGSQMSASFTTTGKHIISIGDD--CR 506 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~----~~~~~-~~~~~~v~~v~~spdg~~l~sgs~D--g~ 506 (667)
........+..++|+|+| +++++++ .++.|.+||+.... ..+.. ..+......++|+|||++|+++..+ +.
T Consensus 205 ~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp EECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred eecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 011123567899999997 5565555 68999999976321 11211 1233456899999999999777654 89
Q ss_pred EEEEEcC--CCCcccc--ccccCccceeEEccCCcEEEEecCCC
Q 005956 507 VYVWNYD--ELCFPSS--KQKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 507 I~iWd~~--~~~~~~~--~~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
|.+|+++ ++..... .........+.|+|||++|+++....
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence 9999996 3432221 11123445679999999998876543
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=7.1e-15 Score=149.46 Aligned_cols=247 Identities=11% Similarity=0.165 Sum_probs=175.8
Q ss_pred ccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 219 QAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
.+|-..+.+|+++++|+++++...++.|.+||... ..... +.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~-~~------------------------------------ 67 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQ-FG------------------------------------ 67 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEE-EC------------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEE-ec------------------------------------
Confidence 35667899999999999999888899999999763 11100 00
Q ss_pred CCcceeeeccccceEEEEe-cCCCeEEEEeC--CCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 299 ESPLQELHGHKGDVLDLAW-SNSNYLLSCSM--DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~-s~~~~l~s~s~--Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
. .....+|...+..+++ .+++.|+.+.. ++.|++|| .+++.+..+. +...+.++++.| +++++++...++.
T Consensus 68 ~--~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 143 (286)
T 1q7f_A 68 E--CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMR 143 (286)
T ss_dssp C--BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred c--cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCE
Confidence 0 0001234567889999 57775554443 88999999 5677777664 445789999999 8888888778899
Q ss_pred EEEEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 374 VRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 374 v~iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
|.+||........+. .....+..++++|+|+.+++...++.|.+||...... ..+... .+...+..++++++
T Consensus 144 i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----g~~~~p~~i~~d~~ 217 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL--RQIGGE----GITNYPIGVGINSN 217 (286)
T ss_dssp EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE--EEESCT----TTSCSEEEEEECTT
T ss_pred EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE--EEEccC----CccCCCcEEEECCC
Confidence 999997654443332 3345689999999998777777899999999754321 112111 11256889999999
Q ss_pred CCeEEEEEeCCC-cEEEEECC-cceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 452 ESQRIMITSEDS-KLRILDGV-DVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 452 g~~~l~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
| .++++...++ .|.+||.. +....+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus 218 G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 218 G-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp C-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred C-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 6 6777777775 99999965 34455555433445789999999987776 67999999998654
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=183.14 Aligned_cols=269 Identities=10% Similarity=0.062 Sum_probs=176.0
Q ss_pred cEEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 224 CIWTLKFSPDGRYLASGGE---------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~---------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.|.+++|||||++||+++. |+.|++||+.++....
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------------------------------------ 104 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------------------------------------ 104 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------------------------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc------------------------------------
Confidence 3899999999999999887 7899999998642200
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcE-----------------EE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TC 354 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~ 354 (667)
...+ ...+..++|+||| .|+.+. ++.|++|++.+++..+... +...| .+
T Consensus 105 -------~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 105 -------GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp -------SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred -------ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 0111 1357889999999 777765 7899999999887765432 22223 48
Q ss_pred EEEeeCCCCEEEEEecCC----------------------------------eEEEEecCCCeEE---Ee------cccC
Q 005956 355 VQFNPIDDNYFISGSIDG----------------------------------KVRIWGVCEKRVV---DW------ADVR 391 (667)
Q Consensus 355 l~f~p~d~~~l~sgs~Dg----------------------------------~v~iwdl~~~~~~---~~------~~~~ 391 (667)
++|+| |+++|++++.|. .|++||+.+++.. .+ ..+.
T Consensus 174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 99999 999999988652 7899999987642 22 2466
Q ss_pred CceEEEEEeeCCCEEEEEecCC----cEEEEE----ecCCcceeeeEeeccccCcCCCCeE-----EEEEccCCCeEEE-
Q 005956 392 DVISAICYIPDGKGFIVGSITG----TCHFYK----ASGNDLKLEKVDFHDRKKTSGNKIT-----GIQFSRDESQRIM- 457 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs~dg----~i~l~d----~~~~~~~~~~~~~~~~~~~~~~~I~-----~l~~sp~g~~~l~- 457 (667)
..+..++|+||++.+++....+ .|.+|| +.+++........ ...+...+. .+.|+|||..+++
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHI---EESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEE---EECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecc---cccCCceEccccCCccEECCCCCeEEEE
Confidence 7789999999987766644332 488888 6554432211000 011224444 7899999855444
Q ss_pred EEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCC--CC--cccccc----
Q 005956 458 ITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDE--LC--FPSSKQ---- 522 (667)
Q Consensus 458 ~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~--~~--~~~~~~---- 522 (667)
++..++ .|++||+..... .....+...+..+.++ +++.|+..+.+ +.+++|.+.. +. ......
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~ 407 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK 407 (719)
T ss_dssp EECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTT
T ss_pred EEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCC
Confidence 344555 566677653321 1122244557777777 88888777655 7888998764 31 111111
Q ss_pred ccCccceeEEccCCcEEEEecCC
Q 005956 523 KNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 523 ~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
.........|+|||..+++....
T Consensus 408 ~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 408 ERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp TTBCBEEEEECGGGSSEEEEECC
T ss_pred CCCceEEEEECCCCCEEEEEcCC
Confidence 11233457899999988876543
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=2.7e-15 Score=158.59 Aligned_cols=271 Identities=11% Similarity=0.112 Sum_probs=180.3
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGE----------DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~----------Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
..+..+..+ .++|+|||++|+++.. ++.|.+||+.+....
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~---------------------------- 94 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE---------------------------- 94 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE----------------------------
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE----------------------------
Confidence 455566666 8999999999999873 678999998764321
Q ss_pred ceeecCCCcccccCCcceeee------ccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEE-eeCCCcEEEE
Q 005956 286 VPVVIPDEVFQIEESPLQELH------GHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCV 355 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~------gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~-~~h~~~V~~l 355 (667)
.++. .+......++++|+| +|+++.. +++|.+||+.+++.+.. +..... ..+
T Consensus 95 -----------------~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v 156 (361)
T 2oiz_A 95 -----------------KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSV 156 (361)
T ss_dssp -----------------EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEE
T ss_pred -----------------EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-cee
Confidence 1111 122456778999999 7776653 68999999999999888 665432 335
Q ss_pred EEeeCCCCEEEEEecCCeEEEEecCC-CeEEE------ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 356 QFNPIDDNYFISGSIDGKVRIWGVCE-KRVVD------WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~------~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
.+.|.....+++.+.||.+.+|++.. +++.. ..........+.++|++..++..+.++.+.++|+........
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~ 236 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD 236 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence 67784457888899999999999865 55441 111111222344578888888888999999999976543322
Q ss_pred -eEeeccccCcC----CCCeEEEEEccCCCeEEEEEe----------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956 429 -KVDFHDRKKTS----GNKITGIQFSRDESQRIMITS----------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 429 -~~~~~~~~~~~----~~~I~~l~~sp~g~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 493 (667)
.+......... ......++|+|++...+++.. ..+.|.+||+.+.........+. +..++|+|
T Consensus 237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp 314 (361)
T 2oiz_A 237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ 314 (361)
T ss_dssp EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence 12111100000 011123789999755444443 13589999987654443333244 89999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC--Cccccc-cccCccceeEEccCCc
Q 005956 494 TGKHIISIGDDCRVYVWNYDEL--CFPSSK-QKNSVRSCEHFFSEGV 537 (667)
Q Consensus 494 dg~~l~sgs~Dg~I~iWd~~~~--~~~~~~-~~~~~~~~~~fs~dg~ 537 (667)
||++|++++. +.|.|||..++ +..... ........+.|+|+|.
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999887 99999999998 654442 3333444568888875
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=4.9e-16 Score=175.04 Aligned_cols=235 Identities=7% Similarity=0.038 Sum_probs=170.3
Q ss_pred eecccc-ccEEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 217 EIQAHK-GCIWTLKFSPDGRYLASGGE---DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 217 ~l~~H~-~~I~~v~fspdg~~Latgs~---Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
.+..|. ..|..++|||| +++++++. +...+||.+.....
T Consensus 58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~------------------------------------ 100 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP------------------------------------ 100 (582)
T ss_dssp ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST------------------------------------
T ss_pred eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC------------------------------------
Confidence 344555 68999999999 88888875 55667776642000
Q ss_pred CcccccCCcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEec
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSI 370 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~ 370 (667)
+... .+..+. .+...+|+|++ .+++++.++.+.+||+.++++.....+.. .+++|+| |+++|++++.
T Consensus 101 ------g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~ 169 (582)
T 3o4h_A 101 ------GEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGF 169 (582)
T ss_dssp ------TCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEE
T ss_pred ------Cccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEE
Confidence 0001 111111 12245666666 44444455555699999998877776554 8899999 9999998887
Q ss_pred C----CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 371 D----GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 371 D----g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
+ +.|++||+.+++...+..+...+..++|+|||+.|+++..+| .|++||+.+++.. . + .. +...+.
T Consensus 170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~-~--~~----~~~~~~ 241 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D-L--EL----PSKDFS 241 (582)
T ss_dssp EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E-C--CC----SCSHHH
T ss_pred cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E-c--cC----CCcChh
Confidence 7 789999999999888888888899999999999999888888 8999999877654 1 1 11 123344
Q ss_pred EEE--------EccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 005956 445 GIQ--------FSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RVYVWNYD 513 (667)
Q Consensus 445 ~l~--------~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I~iWd~~ 513 (667)
.+. |+||| .++++++.++.+++|++ ... .. .....+.+++|+ +++++++++.+. .|++|+..
T Consensus 242 ~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp HHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred hhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 445 99998 89999999999999998 211 11 244678899999 999999988774 47777766
Q ss_pred C
Q 005956 514 E 514 (667)
Q Consensus 514 ~ 514 (667)
+
T Consensus 315 ~ 315 (582)
T 3o4h_A 315 E 315 (582)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=4.9e-15 Score=156.71 Aligned_cols=230 Identities=8% Similarity=0.074 Sum_probs=156.4
Q ss_pred ccceEEEEecCCC-eEEEEeCCCcEEEEecC-CCeEeEEeeC--CCcEEEEEEeeCCCCE--EEEEe-------------
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMDKTVRMWQVG-CNQCLNVFDH--HNYVTCVQFNPIDDNY--FISGS------------- 369 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~-~~~~~~~~~h--~~~V~~l~f~p~d~~~--l~sgs------------- 369 (667)
...+..++|+|++ +|++++.+ .|.+|++. +++......+ ...+.+++|+| ++++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeec
Confidence 3467889999999 78888888 99999997 7877654432 13356689999 8884 44543
Q ss_pred cCCeEEEEecC-CCeEEEec-----ccCCceEEEEEeeCCCEEEEEec-CCcEEEEEec-CCcceee-eEeeccccCcCC
Q 005956 370 IDGKVRIWGVC-EKRVVDWA-----DVRDVISAICYIPDGKGFIVGSI-TGTCHFYKAS-GNDLKLE-KVDFHDRKKTSG 440 (667)
Q Consensus 370 ~Dg~v~iwdl~-~~~~~~~~-----~~~~~v~~v~~spdg~~l~~gs~-dg~i~l~d~~-~~~~~~~-~~~~~~~~~~~~ 440 (667)
.++.+.+|++. .+++.... .+...+.+++|+|||++++++.. ++.|.+|++. +++.... .+... .+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~----~~g 192 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPG 192 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STT
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC----CCC
Confidence 68999999997 45543221 24567999999999998887764 6799999998 5554321 11111 123
Q ss_pred CCeEEEEEccCCCeEEEEEe-CCCcEEEEECC--ccee-----eEEeCCC-----CC------CeEEEE-EcCCCCEEEE
Q 005956 441 NKITGIQFSRDESQRIMITS-EDSKLRILDGV--DVIH-----KFKGLPK-----SG------SQMSAS-FTTTGKHIIS 500 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~--~~~~-----~~~~~~~-----~~------~v~~v~-~spdg~~l~s 500 (667)
..+..++|+|+| +++++++ .++.|.+|+.. +... .+..... .. .+..++ |+|||++|++
T Consensus 193 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 568999999997 5666655 47899999753 2211 1222111 11 478999 9999999987
Q ss_pred EeCCC------cEEEEEcC-CCCcccc---c-cccCccceeEEcc---CCcEEEEecCC
Q 005956 501 IGDDC------RVYVWNYD-ELCFPSS---K-QKNSVRSCEHFFS---EGVSVAVQWPG 545 (667)
Q Consensus 501 gs~Dg------~I~iWd~~-~~~~~~~---~-~~~~~~~~~~fs~---dg~~lav~w~~ 545 (667)
++.+. .|.+|+++ +++.... . ........++|+| ||++|+++-..
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 76432 89999996 4543221 1 1222344578999 89999987554
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=2.3e-15 Score=172.14 Aligned_cols=248 Identities=9% Similarity=-0.010 Sum_probs=171.2
Q ss_pred eeeccccccEEEEEEcCCCCEEEEE--ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASG--GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latg--s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
+.+.+|...|..++|++++-++++. +.++...||....+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------- 57 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------------------------------------- 57 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT---------------------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC---------------------------------------
Confidence 4567899999999999988788887 66889999986421
Q ss_pred cccccCCcceeeeccccceE---------EEEec--CCC-e-EEEEeC-CCcEEEEecC--C-CeEeEEee-----CCCc
Q 005956 294 VFQIEESPLQELHGHKGDVL---------DLAWS--NSN-Y-LLSCSM-DKTVRMWQVG--C-NQCLNVFD-----HHNY 351 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~---------~l~~s--~~~-~-l~s~s~-Dg~I~iWd~~--~-~~~~~~~~-----h~~~ 351 (667)
.....+..|...+. ...|+ ||+ . |+.++. +..|.+|++. + +....... |...
T Consensus 58 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~ 131 (662)
T 3azo_A 58 ------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLR 131 (662)
T ss_dssp ------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEE
T ss_pred ------CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcc
Confidence 11222223333333 44454 888 6 665544 5567777766 3 54444334 5667
Q ss_pred EEEEEEeeCCCCEEEEEecC----------CeEEEEecCC------CeEEEec-ccCCceEEEEEeeCCCEEEEEecCC-
Q 005956 352 VTCVQFNPIDDNYFISGSID----------GKVRIWGVCE------KRVVDWA-DVRDVISAICYIPDGKGFIVGSITG- 413 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~D----------g~v~iwdl~~------~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~dg- 413 (667)
+..++|+| |++.|++++.+ ..|++||+.+ ++...+. .+...+..++|+|||++|+.++.++
T Consensus 132 ~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 132 WADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred ccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 89999999 99999998877 5899999998 7777766 6667888999999999999887553
Q ss_pred -------cEEEEEec-CCcc-eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcce-eeEEeCC
Q 005956 414 -------TCHFYKAS-GNDL-KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVI-HKFKGLP 481 (667)
Q Consensus 414 -------~i~l~d~~-~~~~-~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~-~~~~~~~ 481 (667)
.|.+||+. ++.. ....+... +...+..+.|+|||. ++++++.++ .|++||..... ..+.. .
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~ 283 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-R 283 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-C
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-c
Confidence 79999998 4421 11122111 135789999999984 888888888 66667753321 11111 1
Q ss_pred CCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE--EcCCCCc
Q 005956 482 KSGS--------QMSASFTTTGKHIISIGDDCRVYVW--NYDELCF 517 (667)
Q Consensus 482 ~~~~--------v~~v~~spdg~~l~sgs~Dg~I~iW--d~~~~~~ 517 (667)
+... +..++|+|+++++++++. +.++|| |+.++..
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL 328 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE
Confidence 1111 457899999999999998 999999 5555543
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=1.9e-14 Score=152.68 Aligned_cols=249 Identities=11% Similarity=0.055 Sum_probs=162.3
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+...+|...+..+.|+|||++|+.++.++.|.+||+.++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-------------------------------------- 115 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN-------------------------------------- 115 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE--------------------------------------
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------------------------------
Confidence 334456666667889999999999999999999999874322
Q ss_pred cccCCcceeeeccccceEEEE--ecCCC-eEEE----------------------EeCCCcEEEEecCCCeEeEEeeCCC
Q 005956 296 QIEESPLQELHGHKGDVLDLA--WSNSN-YLLS----------------------CSMDKTVRMWQVGCNQCLNVFDHHN 350 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~--~s~~~-~l~s----------------------~s~Dg~I~iWd~~~~~~~~~~~h~~ 350 (667)
..+..+...+.... +++++ +++. ...+..|.+||+.+++......+..
T Consensus 116 -------~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 188 (388)
T 3pe7_A 116 -------VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ 188 (388)
T ss_dssp -------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS
T ss_pred -------eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc
Confidence 12223333333333 36777 4442 2244789999999998887777888
Q ss_pred cEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEecccC--CceEEEEEeeCCCEEEEEec-CC----cEEE
Q 005956 351 YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWADVR--DVISAICYIPDGKGFIVGSI-TG----TCHF 417 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~~~~--~~v~~v~~spdg~~l~~gs~-dg----~i~l 417 (667)
.+..++|+|.+++.|+.+..+ ..|.++|+.++....+..+. ..+..++|+|||+.|+..+. ++ .|.+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 899999999556777766653 37888898887766655554 35788999999998866543 22 3999
Q ss_pred EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE--------eCCCcEEEEECCcce-eeEEeCCCCC----
Q 005956 418 YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT--------SEDSKLRILDGVDVI-HKFKGLPKSG---- 484 (667)
Q Consensus 418 ~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~--------s~dg~I~iwd~~~~~-~~~~~~~~~~---- 484 (667)
||+.+++.... ......... ......+.|+|+|..++++. ..+..|++||+.... ..+.. +..
T Consensus 269 ~d~~~g~~~~l-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~ 344 (388)
T 3pe7_A 269 ADPETLENRQL-TSMPACSHL-MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR--HDTSWKV 344 (388)
T ss_dssp ECTTTCCEEEE-EEECCEEEE-EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE--CCCCCCC
T ss_pred EecCCCceEEE-EcCCCceee-eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc--ccCcccc
Confidence 99988764322 111110000 00011237999974444333 456789999987432 33333 233
Q ss_pred -------CeEEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 005956 485 -------SQMSASFTTTGKHIISIGD-DCRVYVWNYD 513 (667)
Q Consensus 485 -------~v~~v~~spdg~~l~sgs~-Dg~I~iWd~~ 513 (667)
.+..++|+|||++|+.++. +|...||.++
T Consensus 345 ~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 345 FEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4678899999998887664 6666666543
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=3.7e-14 Score=147.39 Aligned_cols=265 Identities=12% Similarity=0.094 Sum_probs=181.3
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..|+++.|++++..++..+.++.++.|.- ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~ 37 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA------------------------------------------------EPW 37 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC------------------------------------------------EEE
T ss_pred cccceeeecCCccceeEEeecccCccccc------------------------------------------------cee
Confidence 44777888888887777777888888821 224
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecC----CeEEE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSID----GKVRI 376 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~D----g~v~i 376 (667)
..+.++...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEE
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEE
Confidence 4555666778999999999 5567788899999999988876655 4667899999999 88888777666 68999
Q ss_pred EecCCCeEEEec---ccCCceEEEEEeeCCCEEEEEec------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 377 WGVCEKRVVDWA---DVRDVISAICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 377 wdl~~~~~~~~~---~~~~~v~~v~~spdg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
||..++...... .....+..++++|+|+.+++... .+.|..||..+..... +.. . ...+..++
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~-----~~~~~~i~ 188 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ-N-----ISVANGIA 188 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE-E-----ESSEEEEE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec-C-----CCcccceE
Confidence 999887765322 23456899999999987776543 2445555544433321 111 1 13578999
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCc---ceeeE-----EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVD---VIHKF-----KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS 519 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~---~~~~~-----~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~ 519 (667)
|+|+|..++++.+.++.|++||... ....+ ........+..++++++|+++++...++.|++||.+......
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~ 268 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ 268 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEE
Confidence 9999744555666788999999742 22211 111112467889999999988888788999999985432211
Q ss_pred cccccC------ccceeEEccCCcEEEEecC
Q 005956 520 SKQKNS------VRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 520 ~~~~~~------~~~~~~fs~dg~~lav~w~ 544 (667)
...... ....++|++|+..|.++..
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 111111 3456788999877766544
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=6.6e-14 Score=162.38 Aligned_cols=269 Identities=9% Similarity=0.078 Sum_probs=171.4
Q ss_pred EEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 225 IWTLKFSPDGRYLASGGED---------GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~D---------g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
...+.|||||++|+.++.+ +.+.+||+.++.
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---------------------------------------- 103 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---------------------------------------- 103 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----------------------------------------
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc----------------------------------------
Confidence 3458899999999999886 556799998632
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee--CCCcE-----------------EEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYV-----------------TCV 355 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~l 355 (667)
...+..|...+...+||||| .|+.+ .|+.|++|++.+++..+... +...+ ..+
T Consensus 104 ------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 104 ------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp ------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred ------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence 22345677789999999999 77766 57899999999887655432 22223 248
Q ss_pred EEeeCCCCEEEEEecCC------------------------------------eEEEEecCC---C---eEEEecc----
Q 005956 356 QFNPIDDNYFISGSIDG------------------------------------KVRIWGVCE---K---RVVDWAD---- 389 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~Dg------------------------------------~v~iwdl~~---~---~~~~~~~---- 389 (667)
.|+| |+++|+.++.|. +|++||+.+ + +...+..
T Consensus 177 ~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 177 WWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred EECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 9999 999999876432 488899988 7 5544432
Q ss_pred --cCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCc----ceee-eEeeccccCcCCCCe-----EEEEEccCCC
Q 005956 390 --VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGND----LKLE-KVDFHDRKKTSGNKI-----TGIQFSRDES 453 (667)
Q Consensus 390 --~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~----~~~~-~~~~~~~~~~~~~~I-----~~l~~sp~g~ 453 (667)
+...+..++|+|||+.++..... ..|.+||+.+++ .... .+... .+...| ..+.|+|||.
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~----~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM----STTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE----CSSSCSSSSSCCCCEECTTSS
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec----cCCceEccCcCCCceEcCCCC
Confidence 66679999999999977765433 379999999876 1111 11001 112222 3678999985
Q ss_pred eEEEEEe-CCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCCcc-ccc-
Q 005956 454 QRIMITS-EDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDD-------CRVYVWNYDELCFP-SSK- 521 (667)
Q Consensus 454 ~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D-------g~I~iWd~~~~~~~-~~~- 521 (667)
.+++..+ .+| .|++||.......... .....+..+. .+|++.|+..+.. ..|+..++.++... ...
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~ 409 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC 409 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc
Confidence 5442554 444 6888887643222111 1334455443 2446666554433 24555555554322 111
Q ss_pred c---ccCccceeEEccCCcEEEEecCCCC
Q 005956 522 Q---KNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 522 ~---~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
. .........|+|+|.++++.+....
T Consensus 410 ~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred ccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 1 1233445789999999888776543
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=1.1e-13 Score=144.11 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=169.7
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
-+.|.+|+++|+|+++++...++.+.++........ ... .......+.+..++... .+.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~i~~~d~~~---------------g~~ 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVY----QQR--GLGPIEEDTILVIDPNN---------------AEI 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCB----SCG--GGCSCCSCCEEEECTTT---------------CCE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceee----ccc--ccccccCCcEEEEECCC---------------CeE
Confidence 467999999999999999888854333222211000 000 00000112222222111 111
Q ss_pred ceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCe-EeEEee----------CCCcEEEEEEeeCCCCEEEEE
Q 005956 302 LQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQ-CLNVFD----------HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 302 ~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~-~~~~~~----------h~~~V~~l~f~p~d~~~l~sg 368 (667)
+..+. ++-.....+++++++ ++++...++.|++||..... .+..+. +-.....++++|.++.++++.
T Consensus 82 ~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d 161 (329)
T 3fvz_A 82 LQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161 (329)
T ss_dssp EEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred EeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence 22222 344578899999999 77777888999999986552 455552 233689999998567777777
Q ss_pred e-cCCeEEEEecCCCeEEE-ecc----------cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccc
Q 005956 369 S-IDGKVRIWGVCEKRVVD-WAD----------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 369 s-~Dg~v~iwdl~~~~~~~-~~~----------~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
+ .++.|++||. .++.+. +.. .-..+..++++|+ |+.+++...++.|++|+..+++.... +..
T Consensus 162 ~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~-~~~--- 236 (329)
T 3fvz_A 162 GYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE-IKH--- 236 (329)
T ss_dssp CSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECC---
T ss_pred CCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE-Eec---
Confidence 6 6899999995 444443 321 1234889999998 77777777889999999985554322 211
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEe-------CCCcEEEEECCcceeeEEe---CCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITS-------EDSKLRILDGVDVIHKFKG---LPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
......+..++|+| + ..+.+.+ .+..|++||..+....... ..+...+..++++|+|.++++...++
T Consensus 237 -~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 237 -ASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN 313 (329)
T ss_dssp -TTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC
T ss_pred -cccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC
Confidence 12346788999999 3 3333332 3458999997644332221 23566789999999998888888899
Q ss_pred cEEEEEcCCC
Q 005956 506 RVYVWNYDEL 515 (667)
Q Consensus 506 ~I~iWd~~~~ 515 (667)
.|++|++...
T Consensus 314 ~I~~~~~~~~ 323 (329)
T 3fvz_A 314 TVWKFTLTEK 323 (329)
T ss_dssp CEEEEEEEEC
T ss_pred EEEEEeCCcc
Confidence 9999998653
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=5e-13 Score=136.56 Aligned_cols=240 Identities=9% Similarity=0.036 Sum_probs=169.7
Q ss_pred eeeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 216 QEIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
..+..+.....+++|+|+|+ +++++..++.|.+|+..+.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------------------------------- 60 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------------------------------- 60 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------------------------------
Confidence 34555667788999999998 7888888999999998752
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sg 368 (667)
...+..+...+.++++++++ ++++...++.|.+||..+++...... ....+..+++.| +++++++.
T Consensus 61 -------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd 132 (296)
T 3e5z_A 61 -------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSD 132 (296)
T ss_dssp -------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEE
T ss_pred -------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEEC
Confidence 23344566778999999999 55555556899999998887655442 123466899999 89888873
Q ss_pred ----e-------------cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEec-CCcc-eeee
Q 005956 369 ----S-------------IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKAS-GNDL-KLEK 429 (667)
Q Consensus 369 ----s-------------~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~-~~~~-~~~~ 429 (667)
+ ..+.|..++.. ++..........+..++|+|+|+.+++.+.++.|.+|++. ++.. ....
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE
T ss_pred CccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe
Confidence 2 13467777766 6665555666678999999999999777778999999997 3333 1111
Q ss_pred EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEE-cCCCCEEEEEeCCCcE
Q 005956 430 VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASF-TTTGKHIISIGDDCRV 507 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~Dg~I 507 (667)
. +.. ....+.++++.++| +++++. ++.|.+||... ....+.. +.. +.+++| +|+++.|++++.+ .+
T Consensus 212 ~-~~~----~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~-~l 279 (296)
T 3e5z_A 212 H-FTV----EPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVST-EF 279 (296)
T ss_dssp E-ECC----SSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred E-eeC----CCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence 1 111 23456789999997 544444 88999999763 3334443 344 889999 6899999998875 35
Q ss_pred EEEEcCCCC
Q 005956 508 YVWNYDELC 516 (667)
Q Consensus 508 ~iWd~~~~~ 516 (667)
.-++.++..
T Consensus 280 ~~~~~~~~~ 288 (296)
T 3e5z_A 280 WSIETNVRG 288 (296)
T ss_dssp EEEECSCCB
T ss_pred EEEEccccc
Confidence 555555543
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=1.5e-12 Score=135.18 Aligned_cols=242 Identities=10% Similarity=0.068 Sum_probs=164.9
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
..+..|...+.+++|+|+|++++++..++.|.+||..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--------------------------------------- 78 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--------------------------------------- 78 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------------------------------
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---------------------------------------
Confidence 34556777789999999999888888999999999875321
Q ss_pred cccCCcceeeeccccceEEEEecCCC-eEEEEeCC----CcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD----KTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D----g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~s 367 (667)
......+...+.+++|++++ ++++...+ +.|.+||..++.....+. +...+.++++.| +++++++
T Consensus 79 ------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~ 151 (333)
T 2dg1_A 79 ------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFT 151 (333)
T ss_dssp ------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEE
T ss_pred ------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEE
Confidence 11112355679999999999 55555555 589999998877654432 445799999999 8887776
Q ss_pred Eec------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeE--eeccccCc
Q 005956 368 GSI------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKV--DFHDRKKT 438 (667)
Q Consensus 368 gs~------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~--~~~~~~~~ 438 (667)
... .+.|..+|..+++..........+..++|+|+|+.++++ +.++.|.+||+.........+ ........
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 653 356777777766665544444568899999999866554 467899999996421111111 00000001
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLP----KSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
...+..+++.++| .++++...++.|.+||... ....+.... +...+.+++|+||++.|+.++.++
T Consensus 232 -~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 -HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp -SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred -CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1357889999996 6777777789999999753 233333211 112578999999988887666553
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=1.2e-12 Score=136.67 Aligned_cols=203 Identities=10% Similarity=0.025 Sum_probs=135.2
Q ss_pred cceEEEEecCCC-eEEEEeCC---C--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC------------
Q 005956 310 GDVLDLAWSNSN-YLLSCSMD---K--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------------ 371 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~D---g--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D------------ 371 (667)
..+..++|+|+| .|+.++.+ + .|.+|++.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999 77766643 2 48888999888877776555 99999999 89988887643
Q ss_pred ---------------CeEEEEecCCCeE-EEecccCCceEEEEEeeCCCEEEEEecCC-------cEEEEEecCCcceee
Q 005956 372 ---------------GKVRIWGVCEKRV-VDWADVRDVISAICYIPDGKGFIVGSITG-------TCHFYKASGNDLKLE 428 (667)
Q Consensus 372 ---------------g~v~iwdl~~~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg-------~i~l~d~~~~~~~~~ 428 (667)
..|++||+.+++. ..+.. . .+..++|+||| .++++..++ ...+|.+.++.. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--E 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--E
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--E
Confidence 5799999999887 44444 3 78899999999 777765542 455665553322 1
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC--------CcEEEEECCcceeeEEeCCCCCCeEE-EEEcCCCCEEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED--------SKLRILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHII 499 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~ 499 (667)
.+... ..+..+ +|+| ++|+.++.+ ..|++|| ......+ ...+...+.. +.|+ |+ +++
T Consensus 212 ~l~~~-------~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 212 KMFEK-------VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp EEEEE-------ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EEE
T ss_pred EeccC-------cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EEE
Confidence 11111 234444 8997 555555433 4788888 3222211 2224566775 8999 88 999
Q ss_pred EEeCCCcEEEEEcCCCCccccccccCccceeEEcc
Q 005956 500 SIGDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFS 534 (667)
Q Consensus 500 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~ 534 (667)
+++.++.++|| +.++..............+.|+|
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 99999999999 87544322222233444566777
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=5.1e-13 Score=154.14 Aligned_cols=242 Identities=12% Similarity=0.118 Sum_probs=168.4
Q ss_pred cccccEEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDG-----VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg-----~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+|...+..++|||||++||.+..++ .|++||+.++...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------------------------------------- 164 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------------------------------------- 164 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 4666799999999999999876644 8999999874321
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc----------------EEEEecCCCeE--eEEee---CCCcE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT----------------VRMWQVGCNQC--LNVFD---HHNYV 352 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~----------------I~iWd~~~~~~--~~~~~---h~~~V 352 (667)
.... ....+..++|+||| .|+.++.++. |++|++.+++. ...+. +...+
T Consensus 165 --------~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 165 --------PDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp --------EEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred --------cccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 1111 11236789999999 8888887766 99999988763 23332 45568
Q ss_pred EEEEEeeCCCCEEEEEec-----CCeEEEEecCC------C--eEEEecccCCceEEEEEeeCCCEEEEEecCC----cE
Q 005956 353 TCVQFNPIDDNYFISGSI-----DGKVRIWGVCE------K--RVVDWADVRDVISAICYIPDGKGFIVGSITG----TC 415 (667)
Q Consensus 353 ~~l~f~p~d~~~l~sgs~-----Dg~v~iwdl~~------~--~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg----~i 415 (667)
..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+|+.|++.+..+ .|
T Consensus 236 ~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 236 GGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEE
T ss_pred EEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEE
Confidence 8999999 9999888775 56899999986 4 34555555555544 5889999888876543 58
Q ss_pred EEEEecCCcce-eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcc--eeeEEeCCCCCCeEEEE
Q 005956 416 HFYKASGNDLK-LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDV--IHKFKGLPKSGSQMSAS 490 (667)
Q Consensus 416 ~l~d~~~~~~~-~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~--~~~~~~~~~~~~v~~v~ 490 (667)
.+||+.+.... ...+..+. ....+..+.|+++ ..++++...++ .|++||+.+. ...+.. +...+..++
T Consensus 314 ~~~d~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~ 386 (710)
T 2xdw_A 314 INIDFTDPEESKWKVLVPEH----EKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYS 386 (710)
T ss_dssp EEEETTSCCGGGCEEEECCC----SSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEE
T ss_pred EEEeCCCCCcccceeccCCC----CCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCC--CCceEEEEe
Confidence 99998765421 11121111 0135788999865 47888888887 4666786432 334433 467788899
Q ss_pred EcCCCCEEEEEe----CCCcEEEEEcCCCC
Q 005956 491 FTTTGKHIISIG----DDCRVYVWNYDELC 516 (667)
Q Consensus 491 ~spdg~~l~sgs----~Dg~I~iWd~~~~~ 516 (667)
++|+++.|+... ..+.|++||+.+++
T Consensus 387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 999998766432 34789999998876
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.55 E-value=1.7e-13 Score=145.39 Aligned_cols=252 Identities=12% Similarity=0.081 Sum_probs=159.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeee
Q 005956 227 TLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELH 306 (667)
Q Consensus 227 ~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (667)
.+.|+|||++|+.++.++.|.+|++.++....+...+.. . ...++...... ......+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~---~~~g~~l~~~~-----------------~~~~~~~- 142 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-W---KGYGTWVANSD-----------------CTKLVGI- 142 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-E---EEEEEEEECTT-----------------SSEEEEE-
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-c---CCCCCEEEecc-----------------CCccccc-
Confidence 478999999999999999999999987654333221111 0 00000000000 0000000
Q ss_pred ccccceEEEEecCCC-eEEEE-----eCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC------CeE
Q 005956 307 GHKGDVLDLAWSNSN-YLLSC-----SMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID------GKV 374 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~-----s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D------g~v 374 (667)
....+.|+|++ .++.. ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+ ..|
T Consensus 143 ----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 143 ----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp ----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred ----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 01124578888 44433 466789999999998877777888899999999446666665543 368
Q ss_pred EEEecCCCeEEEeccc--CCceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEE
Q 005956 375 RIWGVCEKRVVDWADV--RDVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~--~~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 447 (667)
.+||+.+++...+..+ ...+..++|+|||+.|+.++.+ +.|.+||+.++..... ... .... +.
T Consensus 219 ~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~--------~~~~-~~ 288 (396)
T 3c5m_A 219 WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVM--------PPCS-HL 288 (396)
T ss_dssp EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EEC--------CSEE-EE
T ss_pred EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeC--------CCCC-CC
Confidence 8999987766554443 2357889999999988877654 4499999987654321 111 1123 88
Q ss_pred Ecc-CCCeEEEEEe----------------CCCcEEEEECCcc-eeeEEeCCCCC-----------CeEEEEEcCCCCEE
Q 005956 448 FSR-DESQRIMITS----------------EDSKLRILDGVDV-IHKFKGLPKSG-----------SQMSASFTTTGKHI 498 (667)
Q Consensus 448 ~sp-~g~~~l~~~s----------------~dg~I~iwd~~~~-~~~~~~~~~~~-----------~v~~v~~spdg~~l 498 (667)
|+| +| +++++++ .+..|++||+... ...+.. +.. .+..++|+|||++|
T Consensus 289 ~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 289 MSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred ccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCeE
Confidence 999 87 5666544 3478999997643 233333 222 25667899999998
Q ss_pred EEEeC-CCc--EEEEEcCCCCc
Q 005956 499 ISIGD-DCR--VYVWNYDELCF 517 (667)
Q Consensus 499 ~sgs~-Dg~--I~iWd~~~~~~ 517 (667)
+.++. ++. |+++++.++..
T Consensus 366 ~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEECTTSSCEEEEEECCTTCC
T ss_pred EEEecCCCCceEEEEEEccccc
Confidence 87765 454 55555555543
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.55 E-value=1.3e-12 Score=137.91 Aligned_cols=235 Identities=9% Similarity=0.008 Sum_probs=155.0
Q ss_pred eeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCCCE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNY 364 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~~~ 364 (667)
..+..+..+ .++|+|++ +|+++. .+++|.+||+.+.+.+..+. +......++|+| ++++
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~ 121 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKF 121 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSE
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCE
Confidence 344444444 89999999 777665 36789999999998887775 234567899999 9999
Q ss_pred EEEEec--CCeEEEEecCCCeEEEe-cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCC
Q 005956 365 FISGSI--DGKVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 365 l~sgs~--Dg~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~ 440 (667)
|+++.. ++.|.+||+.+++++.. ...... ..+.+.|++ ..+++.+.||.+.+|++....................
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 998874 57899999999988765 554433 235567765 6778888999999999865222211111000001111
Q ss_pred CCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCC----CC----CCeEEEEEcCCCCEEEEEeC-----
Q 005956 441 NKITGIQFSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP----KS----GSQMSASFTTTGKHIISIGD----- 503 (667)
Q Consensus 441 ~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~----~~----~~v~~v~~spdg~~l~sgs~----- 503 (667)
.+ ..+.+++++ ..++..+.++.|.++|+.... ..+.... .. .....++|+|++++++++..
T Consensus 201 ~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 201 DP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp SC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred Cc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 12 123345665 455666788999999975221 1111100 00 11113689999998887653
Q ss_pred ------CCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956 504 ------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 504 ------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
.+.|.+||+.+.+......... ...++|+|||+.|+++..
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC
Confidence 3489999999987755544444 677899999998888763
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=9.8e-13 Score=137.25 Aligned_cols=222 Identities=11% Similarity=0.116 Sum_probs=147.1
Q ss_pred ccEEEEEEcCCCCEEEEEECC---Cc--EEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 223 GCIWTLKFSPDGRYLASGGED---GV--VRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~D---g~--I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
..+..++|||||++||.++.+ +. |.+|++.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~------------------------------------------ 96 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS------------------------------------------ 96 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE------------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc------------------------------------------
Confidence 468889999999999988754 33 6666766421
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeC---------------------------CCcEEEEecCCCeEeEEeeCC
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSM---------------------------DKTVRMWQVGCNQCLNVFDHH 349 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~---------------------------Dg~I~iWd~~~~~~~~~~~h~ 349 (667)
...+..+.. +..++|+|++ .|+.++. ...|.+||+.+++.+..+...
T Consensus 97 ----~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 97 ----SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp ----EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred ----eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 112222233 8999999999 6776653 257999999998873444333
Q ss_pred CcEEEEEEeeCCCCEEEEEecCC-------eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC--------Cc
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDG-------KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT--------GT 414 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg-------~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d--------g~ 414 (667)
.+..+.|+| ++ +++++..+. ...||.+.+++...+..+ ..+..+ +|||+.|+.++.+ ..
T Consensus 172 -~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 172 -RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp -TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred -CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence 788999999 88 777776542 334444336666555444 445444 9999999887754 35
Q ss_pred EEEEEecCCcceeeeEeeccccCcCCCCeEE-EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcC
Q 005956 415 CHFYKASGNDLKLEKVDFHDRKKTSGNKITG-IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTT 493 (667)
Q Consensus 415 i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~-l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 493 (667)
|.+|| ++.... + ...+...+.. +.|+ ++ ++++++.++.++|| +.+... .....+...+.+++|+|
T Consensus 246 l~~~d--~~~~~~----l---~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 246 LYIYD--GKEVMG----I---LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEEC--SSCEEE----S---STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS
T ss_pred EEEEC--CCceEe----c---cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC
Confidence 77777 332211 1 1112356776 8999 74 88888999999998 653221 12222467789999999
Q ss_pred CCCEEEEEeCCCcE-EEEEcC
Q 005956 494 TGKHIISIGDDCRV-YVWNYD 513 (667)
Q Consensus 494 dg~~l~sgs~Dg~I-~iWd~~ 513 (667)
.++++++.++.. .||.++
T Consensus 312 --~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 312 --IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --SEEEEEECSSSCCEEEEES
T ss_pred --cEEEEEcCCCChHHheEeC
Confidence 677777777654 777766
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.54 E-value=4.7e-13 Score=152.88 Aligned_cols=204 Identities=9% Similarity=-0.004 Sum_probs=136.0
Q ss_pred cccceEEEEecCCC-eEEEEeCC----------CcEEEEecCC------CeEeEEe-eCCCcEEEEEEeeCCCCEEEEEe
Q 005956 308 HKGDVLDLAWSNSN-YLLSCSMD----------KTVRMWQVGC------NQCLNVF-DHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~s~s~D----------g~I~iWd~~~------~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
|...+.+++|+||| .|++++.| ..|++||+.+ ++..... .+...+..++|+| |+++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 66788999999999 88888776 5899999998 6666555 5667888999999 999999887
Q ss_pred cCC--------eEEEEecC-CC---eEEEecc-cCCceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeecc
Q 005956 370 IDG--------KVRIWGVC-EK---RVVDWAD-VRDVISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHD 434 (667)
Q Consensus 370 ~Dg--------~v~iwdl~-~~---~~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~ 434 (667)
.++ .|++||+. ++ +...+.. +...+..++|+|||++++++..+| .|.+||+.+++.... ...+.
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~ 285 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRREE 285 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccccc
Confidence 553 79999999 56 5555444 367899999999999777787888 455555544433211 11110
Q ss_pred ccCc--CCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCcc-eeeEEeCCCCCCeEEE-EEcCCCCEEEEEeCCC--c
Q 005956 435 RKKT--SGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVDV-IHKFKGLPKSGSQMSA-SFTTTGKHIISIGDDC--R 506 (667)
Q Consensus 435 ~~~~--~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~~-~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~Dg--~ 506 (667)
.... -.-.+..++|+|++ .++++++. +.++|| |.... ...+. .+...+..+ +++.+.-++++++.+. .
T Consensus 286 ~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 286 EFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp BSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred cccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 0000 00014678899985 78888888 998998 55422 33332 245556666 4443333344445554 5
Q ss_pred EEEEEcCCCCc
Q 005956 507 VYVWNYDELCF 517 (667)
Q Consensus 507 I~iWd~~~~~~ 517 (667)
|++||+.+++.
T Consensus 362 i~~~d~~~g~~ 372 (662)
T 3azo_A 362 VVELDTVTGRA 372 (662)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 66667767654
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=1.7e-12 Score=130.27 Aligned_cols=239 Identities=11% Similarity=0.027 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 224 CIWTLKFSPDGRYLA-SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 224 ~I~~v~fspdg~~La-tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
...+|+++++|++++ +.+.++.|.+|+..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--------------------------------------------- 59 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--------------------------------------------- 59 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------------------------
Confidence 678999999999777 5467889999986542110
Q ss_pred eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
.....+...+.++++.+++.|+.+..++.|.+||..+....... .....+.++++.+ +++++++...++.|.+|+..+
T Consensus 60 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 60 VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC
T ss_pred eEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC
Confidence 00012234577899999884444444889999998766543222 2336789999999 888887777788999998765
Q ss_pred CeEEEe-cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 382 KRVVDW-ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 382 ~~~~~~-~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
...... ......+..++++++|+.+++...++.|.+||..+...... .......+.++++.++| .++++..
T Consensus 139 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~p~~i~~d~~g-~l~v~~~ 210 (270)
T 1rwi_B 139 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL-------PFTDITAPWGIAVDEAG-TVYVTEH 210 (270)
T ss_dssp CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC-------CCSSCCSEEEEEECTTC-CEEEEET
T ss_pred ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee-------cccCCCCceEEEECCCC-CEEEEEC
Confidence 544332 22234678899999998777766788999999876543221 01112568899999996 6777777
Q ss_pred CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 461 EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 461 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
.++.|.+||............+...+.+++++++|+++++...++.|+++++...+
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 78899999976443333222234578999999999988888889999999987654
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=2.6e-13 Score=156.27 Aligned_cols=243 Identities=12% Similarity=0.056 Sum_probs=165.4
Q ss_pred cccccEEEEEEcCCCCEEE-----EEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 220 AHKGCIWTLKFSPDGRYLA-----SGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~La-----tgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+|...+..++|||||++|| .|+++..|++||+.++....
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------------------------------ 161 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------------------------------ 161 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------------------------------
Confidence 5777899999999999999 45556789999998743210
Q ss_pred ccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc-------------EEEEecCCCeE--eEEee---CCCcEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD---HHNYVTCV 355 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~-------------I~iWd~~~~~~--~~~~~---h~~~V~~l 355 (667)
...+... ....++|+||| .|+.++.|.. |++|++.++.. ...+. +...+..+
T Consensus 162 -------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 162 -------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp -------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred -------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 0011111 12578999999 8888888776 99999998762 23332 44688999
Q ss_pred EEeeCCCCEEEEEecCC----eEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEec----CCcEEEEEecCCcce-
Q 005956 356 QFNPIDDNYFISGSIDG----KVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSI----TGTCHFYKASGNDLK- 426 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~Dg----~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~----dg~i~l~d~~~~~~~- 426 (667)
.|+| ++++|+.++.++ .|++|+..+++...+..+...+....+ ++|+ +++.+. ++.|.+||+.+....
T Consensus 233 ~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 233 DLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999 899888877666 688888777766666666666666666 7777 655554 578999998765421
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--c-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--D-VIHKFKGLPKSGSQMSASFTTTGKHIISIG- 502 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs- 502 (667)
...+..+. ....+..+.|+ + ..++++...|+..+||... . ....+.. .....+..++++|+++.|+...
T Consensus 310 ~~~l~~~~----~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 310 WKEIVPED----SSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp CEEEECCC----SSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEE
T ss_pred CeEEecCC----CCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEc
Confidence 11111111 12457888888 3 4788888999987777532 2 1222222 1255677788899998777332
Q ss_pred ---CCCcEEEEEcCCCCc
Q 005956 503 ---DDCRVYVWNYDELCF 517 (667)
Q Consensus 503 ---~Dg~I~iWd~~~~~~ 517 (667)
..+.|++||+.+++.
T Consensus 383 s~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 383 SFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEEETTTCCE
T ss_pred CCCCCCEEEEEECCCCcE
Confidence 347899999988764
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=5.4e-11 Score=120.69 Aligned_cols=267 Identities=8% Similarity=0.027 Sum_probs=182.4
Q ss_pred eccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccc
Q 005956 218 IQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQI 297 (667)
Q Consensus 218 l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (667)
+..+...+.+++++++|+++++...++.|.+||.. +....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~--------------------------------------- 49 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE--------------------------------------- 49 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---------------------------------------
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE---------------------------------------
Confidence 34566789999999999988776668889999876 22110
Q ss_pred cCCcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee---CCCcEEEEEEeeCCCCEEEEEecCCe
Q 005956 298 EESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD---HHNYVTCVQFNPIDDNYFISGSIDGK 373 (667)
Q Consensus 298 ~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~d~~~l~sgs~Dg~ 373 (667)
..+..+...+.++++.+++ .+++...++.|..||.. ++. ..+. ....+.++++.+ ++.++++...++.
T Consensus 50 -----~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~ 121 (299)
T 2z2n_A 50 -----YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNR 121 (299)
T ss_dssp -----EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred -----ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCce
Confidence 0011234568899999988 55555557889999986 433 2232 455789999998 8888887777889
Q ss_pred EEEEecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 374 VRIWGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 374 v~iwdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
|..||. +++.... ......+..+++.++|+.+++...++.|..||. ++.... +... .....+..+++.++
T Consensus 122 i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 122 IGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FKIP----TPASGPVGITKGND 193 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTT
T ss_pred EEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--eeCC----CCCCcceeEEECCC
Confidence 999998 5555433 223456899999999987777767789999998 444322 1111 12356889999998
Q ss_pred CCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-c-cccCccce
Q 005956 452 ESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-K-QKNSVRSC 529 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~-~~~~~~~~ 529 (667)
| .++++...++.|.+||.......+........+.+++++++|+..++...++.|.+||.. +..... . ........
T Consensus 194 g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~ 271 (299)
T 2z2n_A 194 D-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHG 271 (299)
T ss_dssp S-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEE
T ss_pred C-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccce
Confidence 6 566666668899999984333334333345678999999999977766678899999984 332211 1 11223445
Q ss_pred eEEccCCcEEEEec
Q 005956 530 EHFFSEGVSVAVQW 543 (667)
Q Consensus 530 ~~fs~dg~~lav~w 543 (667)
+.+ ++|.+.+...
T Consensus 272 i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 272 ICF-DGETIWFAME 284 (299)
T ss_dssp EEE-CSSCEEEEET
T ss_pred EEe-cCCCEEEEec
Confidence 566 7777666654
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=4.5e-12 Score=131.84 Aligned_cols=233 Identities=10% Similarity=0.064 Sum_probs=164.0
Q ss_pred ccceEEEEecCCC-eEEEEeCC------------------------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCC
Q 005956 309 KGDVLDLAWSNSN-YLLSCSMD------------------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPID 361 (667)
Q Consensus 309 ~~~V~~l~~s~~~-~l~s~s~D------------------------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d 361 (667)
-+.+.+++++++| ++++...+ ++|.+||..+++.+..+. +-..+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 3579999999999 66666656 379999999999887775 345789999999 8
Q ss_pred CCEEEEEecCCeEEEEecCCC--eEEEe---------cccCCceEEEEEee-CCCEEEEEe-cCCcEEEEEecCCcceee
Q 005956 362 DNYFISGSIDGKVRIWGVCEK--RVVDW---------ADVRDVISAICYIP-DGKGFIVGS-ITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~--~~~~~---------~~~~~~v~~v~~sp-dg~~l~~gs-~dg~i~l~d~~~~~~~~~ 428 (667)
++++++...++.|++||.... .+..+ ..+-..+..++++| +|+.+++.+ .++.|++|+.. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~- 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVT- 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEE-
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEE-
Confidence 998888888999999998765 23333 22334689999999 788888876 68999999954 33322
Q ss_pred eEeecccc----CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE-
Q 005956 429 KVDFHDRK----KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI- 501 (667)
Q Consensus 429 ~~~~~~~~----~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg- 501 (667)
.+...+.. .........++++|+++.++++...++.|++||.. +....+....+...+..++|+| +..+++.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 22111110 11224478999999855778888889999999976 3444554444667788999999 4333333
Q ss_pred ------eCCCcEEEEEcCCCCccccc----cccCccceeEEccCCcEEEEecCC
Q 005956 502 ------GDDCRVYVWNYDELCFPSSK----QKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 502 ------s~Dg~I~iWd~~~~~~~~~~----~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
..+..|++|++.+++..... ........++|+|+|.++++.+..
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 34458999999888765442 122334567899999766665543
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=7.1e-12 Score=127.12 Aligned_cols=227 Identities=9% Similarity=0.152 Sum_probs=157.4
Q ss_pred ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-------CCCcEEEEEEeeCCCCEEEEEec-CCeEEEE
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-------HHNYVTCVQFNPIDDNYFISGSI-DGKVRIW 377 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iw 377 (667)
+|-..+.++++++++ ++++...++.|.+||.. ++.+..+. +...+..+++.+.+++++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 556778999999998 66677788999999987 66666653 23578999995326666666543 8899999
Q ss_pred ecCCCeEEE-ec-ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 378 GVCEKRVVD-WA-DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 378 dl~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
|. +++.+. +. .....+..++++|+|+.+++...++.|.+||...... ..+... .+...+..++++++| .+
T Consensus 106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~--~~~~~~----~~~~~p~~i~~~~~g-~l 177 (286)
T 1q7f_A 106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL--HKFGCS----KHLEFPNGVVVNDKQ-EI 177 (286)
T ss_dssp CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE--EEEECT----TTCSSEEEEEECSSS-EE
T ss_pred CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE--EEeCCC----CccCCcEEEEECCCC-CE
Confidence 94 455443 32 2345689999999999777777789999999653221 122111 123568999999996 66
Q ss_pred EEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCCccccc-ccc-CccceeE
Q 005956 456 IMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC-RVYVWNYDELCFPSSK-QKN-SVRSCEH 531 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-~I~iWd~~~~~~~~~~-~~~-~~~~~~~ 531 (667)
+++...++.|++||... ....+....+...+..++++++|+++++...++ .|++|+.......... +.. .....++
T Consensus 178 ~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp EEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred EEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence 77777789999999753 233333322346789999999999888888776 9999996543322211 111 1234578
Q ss_pred EccCCcEEEEe
Q 005956 532 FFSEGVSVAVQ 542 (667)
Q Consensus 532 fs~dg~~lav~ 542 (667)
|.|+|.++++.
T Consensus 258 ~~~~g~l~vs~ 268 (286)
T 1q7f_A 258 LMDDGSVVLAS 268 (286)
T ss_dssp EETTTEEEEEE
T ss_pred ECCCCcEEEEC
Confidence 99999876664
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.50 E-value=4.7e-12 Score=131.73 Aligned_cols=238 Identities=6% Similarity=-0.021 Sum_probs=164.4
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
.....|.+. ++++.++...++.|.+||..++.. +
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------------------------~ 77 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------------------------V 77 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------------------------E
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------------------------E
Confidence 345677775 455566666689999999986432 3
Q ss_pred eeeeccccceEEEEecCCCeEEEEe-CCCcEEEEecCCCeEeEEeeCCC------cEEEEEEeeCCCCEEEEEe-cCCeE
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFDHHN------YVTCVQFNPIDDNYFISGS-IDGKV 374 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s-~Dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~d~~~l~sgs-~Dg~v 374 (667)
.++. .......+++++++.++.+. .++.|.+||..+++....+.... ....+++ . ++.++++.. .++.|
T Consensus 78 ~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 78 GRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred EEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence 3332 23567889998888555554 89999999999999888776444 5667777 4 555555443 48899
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC----------CcEEEEEecCCcceeeeEeeccccCcCCCCeE
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT----------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
.++|+.++++.........+..++++|+|++++++..+ +.|.++|..+.+... .+.... .....
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~-~~~~~~-----g~~p~ 228 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK-QFKFKL-----GDWPS 228 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE-EEECCT-----TCCCE
T ss_pred EEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE-EEecCC-----CCCce
Confidence 99999999887655555667889999999876665554 789999998776432 222221 24678
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceee-EE-eCCCCCCeEEEEEcCC-CCEEEEE----eCCCcEEEEEcCCCCc
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHK-FK-GLPKSGSQMSASFTTT-GKHIISI----GDDCRVYVWNYDELCF 517 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~-~~-~~~~~~~v~~v~~spd-g~~l~sg----s~Dg~I~iWd~~~~~~ 517 (667)
.++|+|++ .+|+++.. .|.+||....... .. ..........++++|+ +...++. ..++.|.+||.+ ++.
T Consensus 229 ~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 229 EVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp EEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred eEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 99999986 56666554 8999997643221 11 1112456889999995 5555555 568899999998 654
Q ss_pred cc
Q 005956 518 PS 519 (667)
Q Consensus 518 ~~ 519 (667)
..
T Consensus 305 ~~ 306 (328)
T 3dsm_A 305 ID 306 (328)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=3.8e-11 Score=123.09 Aligned_cols=247 Identities=13% Similarity=0.135 Sum_probs=167.2
Q ss_pred cccccEEEEEEcCCCCEEEE-------EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCC
Q 005956 220 AHKGCIWTLKFSPDGRYLAS-------GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPD 292 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Lat-------gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (667)
..-....+++|+++|+++++ +..++.|.+|+..++......
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------------------------------- 62 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-------------------------------- 62 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------------------------------
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE--------------------------------
Confidence 33445689999999998888 677889999987653321100
Q ss_pred CcccccCCcceeeeccccceEEEEecCC-CeEEEEeCCCcEEEEecCCCeEeEE-ee-----CCCcEEEEEEeeCCCCEE
Q 005956 293 EVFQIEESPLQELHGHKGDVLDLAWSNS-NYLLSCSMDKTVRMWQVGCNQCLNV-FD-----HHNYVTCVQFNPIDDNYF 365 (667)
Q Consensus 293 ~~~~~~~~~~~~l~gh~~~V~~l~~s~~-~~l~s~s~Dg~I~iWd~~~~~~~~~-~~-----h~~~V~~l~f~p~d~~~l 365 (667)
.....++...+.+++++++ +.|+.++....|.+||.. ++.... .. ....+.++++.+ +++++
T Consensus 63 ---------~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~ 131 (314)
T 1pjx_A 63 ---------KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLW 131 (314)
T ss_dssp ---------CCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEE
T ss_pred ---------ecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEE
Confidence 0001134567889999999 766666655589999998 766544 32 123588999999 88887
Q ss_pred EEEecC---------------CeEEEEecCCCeEEEecccCCceEEEEEe----eCCCEEEEE-ecCCcEEEEEec-CCc
Q 005956 366 ISGSID---------------GKVRIWGVCEKRVVDWADVRDVISAICYI----PDGKGFIVG-SITGTCHFYKAS-GND 424 (667)
Q Consensus 366 ~sgs~D---------------g~v~iwdl~~~~~~~~~~~~~~v~~v~~s----pdg~~l~~g-s~dg~i~l~d~~-~~~ 424 (667)
++...+ +.|..||.. ++.............++++ |+|+.++++ ..++.|.+||.. .+.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~ 210 (314)
T 1pjx_A 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK 210 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred EEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc
Confidence 776655 568888876 5555444444567889999 999766655 467899999986 333
Q ss_pred ceeeeEeeccccCcCC-CCeEEEEEccCCCeEEEEEeCCCcEEEEECC--cceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 425 LKLEKVDFHDRKKTSG-NKITGIQFSRDESQRIMITSEDSKLRILDGV--DVIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 425 ~~~~~~~~~~~~~~~~-~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
......... ...+. ..+..+++.++| .++++...++.|.+||.. .....+.. +...+.+++|+++|++|+.+
T Consensus 211 ~~~~~~~~~--~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~ 285 (314)
T 1pjx_A 211 IENKKVWGH--IPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVT 285 (314)
T ss_dssp EEEEEEEEE--CCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEE
T ss_pred cccceEEEE--CCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEE
Confidence 221111110 11112 457889999986 677777788899999976 23333433 45678999999999966554
Q ss_pred -eCCCcEEEEEcCCC
Q 005956 502 -GDDCRVYVWNYDEL 515 (667)
Q Consensus 502 -s~Dg~I~iWd~~~~ 515 (667)
..++.|..|++...
T Consensus 286 ~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 286 EHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTTEEEEEECSSC
T ss_pred eCCCCeEEEEeCCCC
Confidence 45678999998753
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=1.1e-10 Score=130.09 Aligned_cols=259 Identities=13% Similarity=0.026 Sum_probs=175.6
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccc
Q 005956 232 PDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGD 311 (667)
Q Consensus 232 pdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~ 311 (667)
|.+.++++...++.|.++|..++.. +.++.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------------------------~~~i~~-g~~ 198 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------------------------KTVLDT-GYA 198 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE---------------------------------------------EEEEEC-SSC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE---------------------------------------------EEEEeC-CCC
Confidence 5556778888899999999987322 333332 234
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecC--CCeEeEEeeCCCcEEEEEEe----eCCCCEEEEEec-CCeEEEEecCCCe
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVG--CNQCLNVFDHHNYVTCVQFN----PIDDNYFISGSI-DGKVRIWGVCEKR 383 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~----p~d~~~l~sgs~-Dg~v~iwdl~~~~ 383 (667)
+..+.|+|++ ++++++.|+.|.+||+. +++.+..+........++|+ | +++++++++. +++|.++|..+.+
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCc
Confidence 6689999999 88889999999999996 88888888766678899999 6 8888777664 5899999999988
Q ss_pred EEEeccc------------CCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 384 VVDWADV------------RDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 384 ~~~~~~~------------~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
++..... ...+..+..++++..+++. ..+|.|.++|......... ..+. .......+.|+|
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~-----~~~~~~d~~~~p 351 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TEIS-----AERFLHDGGLDG 351 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EEEE-----CCSSEEEEEECT
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-eeee-----ccccccCceECC
Confidence 7653321 1257788888887665554 4568999999876542211 1111 124567889999
Q ss_pred CCCeEEEEEeCCCcEEEEECCcceee--EEe---CCCCCCeEEEEEcCCCCEEE-EEe-CCCcEEEEEcCCCC-------
Q 005956 451 DESQRIMITSEDSKLRILDGVDVIHK--FKG---LPKSGSQMSASFTTTGKHII-SIG-DDCRVYVWNYDELC------- 516 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~~~--~~~---~~~~~~v~~v~~spdg~~l~-sgs-~Dg~I~iWd~~~~~------- 516 (667)
+|..++++...++.|.++|+.+.... ... ..|.+....+ ++|++..+. ++. .++.|.++|..+..
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 98555555667889999998854332 221 1232222222 588855554 443 46899999998732
Q ss_pred ccccccccCcc-ceeEEccCCcEEEEecC
Q 005956 517 FPSSKQKNSVR-SCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 517 ~~~~~~~~~~~-~~~~fs~dg~~lav~w~ 544 (667)
........... -.+.++|++..+-+...
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 21111111122 34678999999999774
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.44 E-value=1.6e-11 Score=141.59 Aligned_cols=229 Identities=9% Similarity=0.020 Sum_probs=152.8
Q ss_pred ccccceEEEEecCCC-eEEEEeCCC-----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-------
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSMDK-----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK------- 373 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~Dg-----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~------- 373 (667)
+|...+..++||||| +|+.+..++ +|++||+.+++.+........+..++|+| |++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 455578899999999 676554433 89999999998876443223367899999 9999999888766
Q ss_pred ---------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEec-----CCcEEEEEecC------Ccceee
Q 005956 374 ---------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSI-----TGTCHFYKASG------NDLKLE 428 (667)
Q Consensus 374 ---------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~-----dg~i~l~d~~~------~~~~~~ 428 (667)
|++|++.+++ ++. ...+...+..+.|+|||++|+.++. +..|.+||+.+ +.....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998865 221 1223455789999999999998775 56899999976 322222
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
.+... ...+.. .|+|+|..+++.+..+ +.|.+||+.... ..+..+.....+..++|++++.++++.
T Consensus 281 ~l~~~------~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 281 KLIDN------FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEECS------SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred EeeCC------CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 22211 123333 4788875555555443 369999987542 333332122367789998888888888
Q ss_pred eCCCc--EEEEEcCCCCcccc-ccccCccceeEEccCCcEEEEec
Q 005956 502 GDDCR--VYVWNYDELCFPSS-KQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 502 s~Dg~--I~iWd~~~~~~~~~-~~~~~~~~~~~fs~dg~~lav~w 543 (667)
..|+. |++|++.++..... .........+.++|++..+++..
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence 88884 66677755543221 11133344567888887777653
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=2.1e-11 Score=124.43 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=157.7
Q ss_pred CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..+..+..+.....+++|+|++ .++++..++.|..|+..++ ...+ .+...+.+++++| +++++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 3455666677778899999988 4778888999999999987 4444 3667899999999 8888877767789999
Q ss_pred EecCCCeEEEeccc-----CCceEEEEEeeCCCEEEE----Eec-------------CCcEEEEEecCCcceeeeEeecc
Q 005956 377 WGVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHD 434 (667)
Q Consensus 377 wdl~~~~~~~~~~~-----~~~v~~v~~spdg~~l~~----gs~-------------dg~i~l~d~~~~~~~~~~~~~~~ 434 (667)
||..+++...+... ...+..++++|+|+.+++ |+. .+.|..++.. +.. ..+.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~--~~~~--- 168 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL--SAPI--- 168 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE--EEEE---
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE--EEee---
Confidence 99988876543221 234678999999998887 331 2344444443 222 1111
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECC-c--c---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGV-D--V---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVY 508 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~-~--~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~ 508 (667)
........++|+|+| +.+++.+.++.|++||+. + . ...+ ..+...+..++++++|+++++. ++.|+
T Consensus 169 ---~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~ 240 (296)
T 3e5z_A 169 ---RDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVH 240 (296)
T ss_dssp ---CCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred ---cCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEE
Confidence 112557899999997 555777788999999975 2 1 2233 2245566789999999877666 78899
Q ss_pred EEEcCCCCccccccccCccceeEE-ccCCcEEEEecCC
Q 005956 509 VWNYDELCFPSSKQKNSVRSCEHF-FSEGVSVAVQWPG 545 (667)
Q Consensus 509 iWd~~~~~~~~~~~~~~~~~~~~f-s~dg~~lav~w~~ 545 (667)
+|+.+............ ...+.| .+++..|.++...
T Consensus 241 ~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 241 VLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT
T ss_pred EECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC
Confidence 99987432222222222 566788 5888888887653
No 191
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.42 E-value=6.3e-10 Score=112.78 Aligned_cols=267 Identities=8% Similarity=-0.013 Sum_probs=182.0
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.....+.+|++.++|++.++...++.|.+|+.. +....
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~----------------------------------------- 54 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE----------------------------------------- 54 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------------------------------
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------------------------------
Confidence 445678999999999988877778899999876 22210
Q ss_pred CcceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-e-CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..+..+...+.++++.+++ .+++...++.|..||.. ++..... . ....+.++++.+ +++++++...++.|..
T Consensus 55 ---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 55 ---FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK 129 (300)
T ss_dssp ---EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred ---EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence 0111233568889999988 55555557889999988 5543222 1 346789999998 8888887776889999
Q ss_pred EecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCe
Q 005956 377 WGVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQ 454 (667)
Q Consensus 377 wdl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~ 454 (667)
||.. ++.... ......+..+++.++|+.+++...++.|..||. ++.... +... .....+..+++.++| .
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~ 200 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YPLP----TNAAAPVGITSGNDG-A 200 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECTTS-S
T ss_pred ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--eeCC----CCCCCcceEEECCCC-C
Confidence 9988 655433 223457899999999996666556788999988 343321 2211 123568899999986 6
Q ss_pred EEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc-cc-ccCccceeEE
Q 005956 455 RIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS-KQ-KNSVRSCEHF 532 (667)
Q Consensus 455 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~-~~~~~~~~~f 532 (667)
++++....+.|.+||.......+........+.+++++++|++.++...++.|..|+.. +..... .. .......+.+
T Consensus 201 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 279 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITF 279 (300)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEE
T ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEe
Confidence 66666667789999975333344333345678899999999977776667899999984 332211 11 1223445677
Q ss_pred ccCCcEEEEec
Q 005956 533 FSEGVSVAVQW 543 (667)
Q Consensus 533 s~dg~~lav~w 543 (667)
.++|.+.+..+
T Consensus 280 ~~~g~l~v~~~ 290 (300)
T 2qc5_A 280 GKDGSVWFALK 290 (300)
T ss_dssp CTTSCEEEECS
T ss_pred CCCCCEEEEcc
Confidence 88887666554
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2.7e-11 Score=140.34 Aligned_cols=242 Identities=17% Similarity=0.107 Sum_probs=158.8
Q ss_pred cccccEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGED-----GVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~D-----g~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+|...+..++|||||++||.+..+ ..|++||+.++...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~------------------------------------- 202 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL------------------------------------- 202 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------------------
Confidence 455578999999999999987654 46999999874321
Q ss_pred ccccCCcceeeeccccceEEEEecCCCeEEEEeCCCc--------------EEEEecCCCeE--eEEee---CCCcEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKT--------------VRMWQVGCNQC--LNVFD---HHNYVTCV 355 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~--------------I~iWd~~~~~~--~~~~~---h~~~V~~l 355 (667)
. ...+...+..++|+||..|+.++.|+. |++|++.++.. ...+. +...+..+
T Consensus 203 --------~-~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 203 --------A-DELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp --------E-EEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred --------C-ccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 1 111122245788999875666666544 89999987752 23333 23368999
Q ss_pred EEeeCCCCEEEEEecCC-----eEEEEecCCC--e-EEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCC
Q 005956 356 QFNPIDDNYFISGSIDG-----KVRIWGVCEK--R-VVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN 423 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~--~-~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~ 423 (667)
.|+| |+++|+..+.++ .|++||+.++ + ...+......+... ++|+|+.|++.+.+ +.|.+||+.+.
T Consensus 274 ~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 274 SVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 9999 999888877654 8999999877 5 55555555445444 35999999888764 45899998764
Q ss_pred cceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE--ECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 424 DLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL--DGVD-VIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw--d~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
......+. .. +...+..+.+.. ..++++...|+..+|| +... ....+.. .....+..++++|+++.|+.
T Consensus 352 ~~~~~~l~-~~----~~~~l~~~~~~~--~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 352 TPRFDTVV-PE----SKDNLESVGIAG--NRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp SCEEEEEE-CC----CSSEEEEEEEEB--TEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred ccccEEEe-cC----CCCeEEEEEEEC--CEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence 20111111 11 123466777773 4788888888877666 4322 2222222 23567888999999886663
Q ss_pred E----eCCCcEEEEEcCCCCc
Q 005956 501 I----GDDCRVYVWNYDELCF 517 (667)
Q Consensus 501 g----s~Dg~I~iWd~~~~~~ 517 (667)
. ...+.|++||+.+++.
T Consensus 424 ~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 424 SFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEETTEEEEEEEEETTTTEE
T ss_pred EEcCCCCCCEEEEEECCCCcE
Confidence 3 2347899999988764
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.40 E-value=1.2e-10 Score=129.82 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=158.4
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC--CCeEEEecccCCceEEEEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRVVDWADVRDVISAICY 399 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~--~~~~~~~~~~~~~v~~v~~ 399 (667)
.+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+++...........++|
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 66777889999999999999999998777888999999 99999999999999999996 7776655555556789999
Q ss_pred e----eCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccC-----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 400 I----PDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 400 s----pdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~-----~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
+ |||++++++.. ++.+.++|..+.+... .+...+... .....+..+..++++..+++.....|.|.++|
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 9 69999888765 5899999988766543 233221100 01236888999998777788888889999999
Q ss_pred CCcce-eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc----cCccceeE-EccCCcEEEE
Q 005956 470 GVDVI-HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK----NSVRSCEH-FFSEGVSVAV 541 (667)
Q Consensus 470 ~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~----~~~~~~~~-fs~dg~~lav 541 (667)
..... ..............+.|+|+|++++++. .++.|.++|..+++....... ........ ++|++..+.+
T Consensus 327 ~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~ 405 (567)
T 1qks_A 327 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 405 (567)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred cCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE
Confidence 76431 1111112345567889999999987766 568999999999875433222 11112222 5787555543
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.39 E-value=1.2e-10 Score=121.12 Aligned_cols=217 Identities=10% Similarity=0.072 Sum_probs=151.0
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~ 390 (667)
....+.+..+..+++...+++|.+||..+++.+..+........+++++ ++.++++...++.|.+||+.++++......
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 4566777543366666678999999999999999887778899999998 775544444889999999999987754443
Q ss_pred CC------ceEEEEEeeCCCEEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 391 RD------VISAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 391 ~~------~v~~v~~spdg~~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.. .+..+++ . +..++++. .++.|.++|+.+.+.... +.. ......+.++|+| ++++++..+
T Consensus 124 g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-i~~-------g~~p~~i~~~~dG-~l~v~~~~~ 192 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-LTI-------GIQPTSLVMDKYN-KMWTITDGG 192 (328)
T ss_dssp TTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-EEC-------SSCBCCCEECTTS-EEEEEBCCB
T ss_pred CCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-EEc-------CCCccceEEcCCC-CEEEEECCC
Confidence 33 5667777 4 45555555 488999999988765432 222 1335678899986 555555544
Q ss_pred ----------CcEEEEECCccee--eEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc--cc-cCcc
Q 005956 463 ----------SKLRILDGVDVIH--KFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK--QK-NSVR 527 (667)
Q Consensus 463 ----------g~I~iwd~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~-~~~~ 527 (667)
+.|.++|..+... .+.. ........++|+|++++|+++.. .|++||..+++..... .. ....
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p 269 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKY 269 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCE
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCce
Confidence 7899999875432 3322 12346899999999999998765 8999999887653211 11 2334
Q ss_pred ceeEEcc-CCcEEEEe
Q 005956 528 SCEHFFS-EGVSVAVQ 542 (667)
Q Consensus 528 ~~~~fs~-dg~~lav~ 542 (667)
..++++| ++.+.++.
T Consensus 270 ~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 270 YGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEEECTTTCCEEEEE
T ss_pred EEEEEcCCCCeEEEEc
Confidence 4578998 45555554
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=8.8e-11 Score=118.90 Aligned_cols=210 Identities=11% Similarity=-0.023 Sum_probs=152.7
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccc-cc
Q 005956 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHK-GD 311 (667)
Q Consensus 233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~-~~ 311 (667)
.+++|++++.|+.|.+||..+++ .+..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~---------------------------------------------~~w~~~~~~~~~ 38 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKE---------------------------------------------IVWEYPLEKGWE 38 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTE---------------------------------------------EEEEEECCTTCC
T ss_pred CCcEEEeeCCCCEEEEEECCCCe---------------------------------------------EEEEeCCCccCC
Confidence 46799999999999999987632 344444444 46
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeC--CCcEEEEEEeeCCCCEEEEEec-CCeEEEEecCCCeEE-E
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSI-DGKVRIWGVCEKRVV-D 386 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~-Dg~v~iwdl~~~~~~-~ 386 (667)
+.++.++|+| +|+ +.++.|..||. +++.+..+.. ...+.++.+.+ +++++++.+. ++.|..+|. +++.+ .
T Consensus 39 ~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~ 113 (276)
T 3no2_A 39 CNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSK 113 (276)
T ss_dssp CCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEE
T ss_pred CcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEE
Confidence 8889999999 555 45788999999 7998888874 35788999999 9999999887 778888886 45443 2
Q ss_pred ec------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 387 WA------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 387 ~~------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
+. .+...+..+++.++|+++++...++.|..||.. ++.... +... ..+.++...++| ..++++.
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~-~~~~-------~~~~~~~~~~~g-~~~v~~~ 183 (276)
T 3no2_A 114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS-VKLS-------GTPFSSAFLDNG-DCLVACG 183 (276)
T ss_dssp EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE-EECS-------SCCCEEEECTTS-CEEEECB
T ss_pred EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE-EECC-------CCccceeEcCCC-CEEEEeC
Confidence 21 122235566788999999999999999999987 555332 2221 345567778886 7788888
Q ss_pred CCCcEEEEECCcceeeEEeCCC------CCCeEEEEEcCCCCEEEEEe
Q 005956 461 EDSKLRILDGVDVIHKFKGLPK------SGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 461 ~dg~I~iwd~~~~~~~~~~~~~------~~~v~~v~~spdg~~l~sgs 502 (667)
.++.|..+|..+.....+...+ ...+..+...++|..+++..
T Consensus 184 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 184 DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 8889999997744443333111 23367888889998888874
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=5.7e-10 Score=113.09 Aligned_cols=237 Identities=8% Similarity=0.024 Sum_probs=164.8
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
+...+.+|+++++|.++++...++.|..|+... ...
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~------------------------------------------- 90 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK------------------------------------------- 90 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-------------------------------------------
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE-------------------------------------------
Confidence 446789999999999888877788898887652 110
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-e-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-D-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
...+..+...+.++++.+++ .+++...++.|.+||. +++..... . ....+.++++.+ +++++++...++.|..|
T Consensus 91 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 91 -EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRI 167 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred -EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEE
Confidence 00011234468889999988 5555556789999998 55544332 2 445789999998 78887777677899999
Q ss_pred ecCCCeEEEe--cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 378 GVCEKRVVDW--ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 378 dl~~~~~~~~--~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
|. +++.... ......+..++++++|+.+++...++.|.+||. ++.... +... .....+.++++.++| .+
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~~~~g-~l 238 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKIP----TPNARPHAITAGAGI-DL 238 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EECC----CCCCCceeEEECCCC-CE
Confidence 99 6665543 233456889999999987666666789999998 554321 2111 123678999999996 55
Q ss_pred EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
+++...++.|.+||.......+....+...+.++++ ++|.+.++.. .+.|..++.++.
T Consensus 239 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 239 WFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 555557789999998544444443334567899999 8888777665 567777777654
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=4.9e-11 Score=120.80 Aligned_cols=219 Identities=13% Similarity=0.095 Sum_probs=158.4
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-eccc-CCc
Q 005956 318 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDV 393 (667)
Q Consensus 318 s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~-~~~ 393 (667)
+|++.|++++.|+.|.+||.++++.+..+... ..+.++.+.| ++++++ +.++.|..||. +++.+. +... ...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 45568999999999999999999999998743 3789999999 899888 45788999999 676654 3332 246
Q ss_pred eEEEEEeeCCCEEEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 394 ISAICYIPDGKGFIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 394 v~~v~~spdg~~l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
+.++.+.|+|+.+++.+. ++.+..+|.. ++... .+.+......+......+.+.++| .++++...++.|.+||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~-~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMK-GEVLS-KTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEE-EEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEE-EEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC-
Confidence 888999999999999887 7777777753 43322 233222111111234556788886 788899999999999986
Q ss_pred ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccccc-------CccceeEEccCCcEEEEecCC
Q 005956 473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKN-------SVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-------~~~~~~~fs~dg~~lav~w~~ 545 (667)
.....+... ...+.++.+.++|++|++++.++.|..+|.++++..+..... .........++|.+++..+.+
T Consensus 155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 433333321 234566788899999999988889999999988876554221 113445677899999998754
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=3.2e-11 Score=138.68 Aligned_cols=225 Identities=11% Similarity=0.002 Sum_probs=146.6
Q ss_pred ccccceEEEEecCCC-eEE-----EEeCCCcEEEEecCCCeEe-EEeeCCCcEEEEEEeeCCCCEEEEEecCCe------
Q 005956 307 GHKGDVLDLAWSNSN-YLL-----SCSMDKTVRMWQVGCNQCL-NVFDHHNYVTCVQFNPIDDNYFISGSIDGK------ 373 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~-----s~s~Dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~------ 373 (667)
+|...+..++||||| +|+ .|+.+.+|++||+.+++.+ ...........++|+| |++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 566679999999999 666 2334568999999998865 2111111126789999 9999999988776
Q ss_pred -------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCC----cEEEEEecCCcceeeeEeeccccC
Q 005956 374 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG----TCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 374 -------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg----~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
|++|++.+++ ++. ...+...+..+.|+|||++|++++.++ .|.+++..+... ..+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~---- 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVKG---- 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEEC----
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeecC----
Confidence 9999998865 222 223445788999999999999887665 555555433322 222211
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe---CCCcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005956 438 TSGNKITGIQFSRDESQRIMITS---EDSKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVW 510 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iW 510 (667)
...+....+ ++|. +++.+. .++.|.+||+.... ..+........+..++|+ ++.++++...|+..+||
T Consensus 271 --~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 271 --VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp --SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred --CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 134455556 6664 555554 25789999986532 333332224567888888 77788889999988888
Q ss_pred EcC-CCCccc--cccccCccceeEEccCCcEEEEec
Q 005956 511 NYD-ELCFPS--SKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 511 d~~-~~~~~~--~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
.++ ++.... ..+.......+.++|++..+++..
T Consensus 346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 665 232221 112233344567889988777654
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.36 E-value=1.3e-09 Score=115.24 Aligned_cols=258 Identities=8% Similarity=-0.021 Sum_probs=163.0
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCC
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSH 285 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (667)
.++..-..+ .++|||||++|+.+. .++.|.+||..+..........
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~---------------------- 116 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP---------------------- 116 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC----------------------
Confidence 344433344 899999999999886 3678999999764332110000
Q ss_pred ceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEE-eeCCCcEEEEEEeeCC
Q 005956 286 VPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNV-FDHHNYVTCVQFNPID 361 (667)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~d 361 (667)
. ..... +......+.|+|+| +|+.+.. +++|.++| .+++.+.. +.... |+.+.|..
T Consensus 117 -------------~-~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~ 176 (373)
T 2mad_H 117 -------------D-APRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGA 176 (373)
T ss_pred -------------C-ccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCC
Confidence 0 00000 01234578999999 7776663 57899999 99998887 65433 24556644
Q ss_pred CCEEEEEecCCeEEEEecCCCeEEEecc------cCCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeec
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVVDWAD------VRDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFH 433 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~~~~~------~~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~ 433 (667)
...+++.+.||.+.++|. +++...... .... .....+.+++..++..+..+.+.+.|+.+...... .+.+.
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 567777888999999999 777652211 1111 23356777777666666788999999976543221 22221
Q ss_pred ccc----CcCCCCeEEEEEccCCCeEEEEEeC----------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC-EE
Q 005956 434 DRK----KTSGNKITGIQFSRDESQRIMITSE----------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK-HI 498 (667)
Q Consensus 434 ~~~----~~~~~~I~~l~~sp~g~~~l~~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~-~l 498 (667)
... .........+.++|++. .++++.. .+.|.++|..+....-... .......++|+|||+ ++
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~-~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSD-GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDL 333 (373)
T ss_pred CCcccccceecCceEeEEECCCCC-EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEE
Confidence 100 00112344578899874 4444432 3589999987544332221 334678999999999 77
Q ss_pred EEEe-CCCcEEEEEcCCCCcccc
Q 005956 499 ISIG-DDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 499 ~sgs-~Dg~I~iWd~~~~~~~~~ 520 (667)
+++. .++.|.+||..+++....
T Consensus 334 ~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEcCCCCeEEEEECCCCCEEee
Confidence 7777 589999999999876433
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=1.6e-10 Score=115.79 Aligned_cols=224 Identities=7% Similarity=-0.023 Sum_probs=152.0
Q ss_pred ceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956 311 DVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~ 387 (667)
...++++++++ .++ +...++.|.+|+..+....... .+...+.++++.+ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 67889999998 444 4367889999998665433221 2335788999999 788666655 88999999887765543
Q ss_pred cc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEE
Q 005956 388 AD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLR 466 (667)
Q Consensus 388 ~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~ 466 (667)
.. ....+..++++|+|+.+++...++.|.+|+..+...... . ......+.++++.++| .++++...++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~-----~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--P-----FTGLNDPDGVAVDNSG-NVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--C-----CCSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--c-----cccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence 32 235689999999998777777788999997554332211 0 1112457889999986 5666666788999
Q ss_pred EEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecC
Q 005956 467 ILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~ 544 (667)
+||............+...+..++++++|.++++...++.|++|+..+......... ......+.+.++|.+++..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 999765433332222336788999999998777777788999999877543322211 133456788999986666554
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=3.9e-10 Score=130.64 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=141.0
Q ss_pred ccccceEEEEecCCC-eEEEEeCC-----CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCe-------
Q 005956 307 GHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGK------- 373 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s~s~D-----g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~------- 373 (667)
+|...+..++||||| +|+.++.+ .+|++||+.+++.+....+...+..++|+| | +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence 344578899999999 66655443 469999999998866432222335789999 8 88888876654
Q ss_pred -------EEEEecCCCe----EEE-ecccCCceEEEEEeeCCCEEEEEecCC-----cEEEEEecCCcce-eeeEeeccc
Q 005956 374 -------VRIWGVCEKR----VVD-WADVRDVISAICYIPDGKGFIVGSITG-----TCHFYKASGNDLK-LEKVDFHDR 435 (667)
Q Consensus 374 -------v~iwdl~~~~----~~~-~~~~~~~v~~v~~spdg~~l~~gs~dg-----~i~l~d~~~~~~~-~~~~~~~~~ 435 (667)
|++|++.++. ++. ...+...+..+.|+|||++|+..+.++ .|.+||+.+.... ...+...
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-- 315 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-- 315 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--
Confidence 8999997765 222 122233588999999999999887654 8999999876222 2222211
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeC---CCcEEEEECCcc---eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSE---DSKLRILDGVDV---IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYV 509 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~---dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i 509 (667)
...+.... +|+|..+++.+.. ++.|.+||+... ...+. ..+...+..++++ ++.++++...|+..+|
T Consensus 316 ----~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 316 ----LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp ----SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred ----CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 12334443 4776444444432 346999998653 12222 2244456677887 6677888888988777
Q ss_pred EEcC-CCCccccc--cccCccceeEEccCCcEEEEec
Q 005956 510 WNYD-ELCFPSSK--QKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 510 Wd~~-~~~~~~~~--~~~~~~~~~~fs~dg~~lav~w 543 (667)
|.++ ++...... ........+.++||+..+++..
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 7554 23222111 1223345567888887666543
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.29 E-value=4.6e-10 Score=117.88 Aligned_cols=277 Identities=12% Similarity=0.076 Sum_probs=169.6
Q ss_pred cccceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEeccc
Q 005956 212 LYTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKK 281 (667)
Q Consensus 212 ~~~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (667)
.....++..-..+ .++++|||++|+.+. .++.|.+||..+.........+.+
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g---------------- 130 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------------- 130 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------------
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc----------------
Confidence 3334455444445 499999999887775 367899999987543211000000
Q ss_pred CCCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEeeCCCcEEEEEEe
Q 005956 282 KSSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFN 358 (667)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 358 (667)
+. .........+.|+||| +|+.+.. +++|.++|+.+++.+..+.-... ....
T Consensus 131 ------------------~r----~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~ 185 (386)
T 3sjl_D 131 ------------------PR----FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIF 185 (386)
T ss_dssp ------------------CC----CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred ------------------cc----cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceee
Confidence 00 0001234568999999 6666653 68999999999999998864442 2334
Q ss_pred eCCCCEEEEEecCCeEEEEecCC-CeEEEec-cc----CCce-EEEEEe-eCCCEEEEEecCCcEEEEEecCCcceee-e
Q 005956 359 PIDDNYFISGSIDGKVRIWGVCE-KRVVDWA-DV----RDVI-SAICYI-PDGKGFIVGSITGTCHFYKASGNDLKLE-K 429 (667)
Q Consensus 359 p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~-~~----~~~v-~~v~~s-pdg~~l~~gs~dg~i~l~d~~~~~~~~~-~ 429 (667)
|.....+++.+.||++.+.++.. +++.... .. ...+ ....|. ++|++++ .+.+|.+.+.|+.+...... .
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 54667888888999999999976 5543211 11 1112 224564 5775444 66689999999987654322 2
Q ss_pred Eeeccc----cCcCCCCeEEEEEccCCCeEEEEEeC---------CCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCC
Q 005956 430 VDFHDR----KKTSGNKITGIQFSRDESQRIMITSE---------DSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTT 494 (667)
Q Consensus 430 ~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s~---------dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spd 494 (667)
+.+... ..-....+..+++++++...+++... .++|.++|+.+. +..+.. ...+.++++++|
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D 341 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQD 341 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSS
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCC
Confidence 321000 00011234457778886444444321 257999998753 333333 236779999999
Q ss_pred CC-EEEEE-eCCCcEEEEEcCCCCccccccccCccceeEEccC
Q 005956 495 GK-HIISI-GDDCRVYVWNYDELCFPSSKQKNSVRSCEHFFSE 535 (667)
Q Consensus 495 g~-~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~d 535 (667)
++ +|+++ ..++.|.++|..+++.............+.+++|
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 97 66665 4589999999999887655444444444455554
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.29 E-value=1.5e-09 Score=111.08 Aligned_cols=229 Identities=10% Similarity=0.051 Sum_probs=150.2
Q ss_pred eeccccceEEEEecCCC-eEEE-------EeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCC-CCEEEEEec
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLS-------CSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPID-DNYFISGSI 370 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s-------~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d-~~~l~sgs~ 370 (667)
+...-....+++|.+++ .+++ ...++.|.+||..+++...... +...+.++++.+ + +++++ ++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v-~~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFV-ADM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEE-EET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEE-EEC
Confidence 34444567899999988 4555 4678899999988887654332 446789999998 6 55444 444
Q ss_pred CCeEEEEecCCCeEEEe-ccc-----CCceEEEEEeeCCCEEEEEecC---------------CcEEEEEecCCcceeee
Q 005956 371 DGKVRIWGVCEKRVVDW-ADV-----RDVISAICYIPDGKGFIVGSIT---------------GTCHFYKASGNDLKLEK 429 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~-~~~-----~~~v~~v~~spdg~~l~~gs~d---------------g~i~l~d~~~~~~~~~~ 429 (667)
...|.+||.. ++.... ... ...+..++++++|+.+++...+ +.|..|+.. +....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-- 166 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-- 166 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE--
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE--
Confidence 5579999998 776554 321 2358899999999877766554 456666654 22211
Q ss_pred EeeccccCcCCCCeEEEEEc----cCCCeEEEEEeCCCcEEEEECC-cce----eeEEeC-CCC-CCeEEEEEcCCCCEE
Q 005956 430 VDFHDRKKTSGNKITGIQFS----RDESQRIMITSEDSKLRILDGV-DVI----HKFKGL-PKS-GSQMSASFTTTGKHI 498 (667)
Q Consensus 430 ~~~~~~~~~~~~~I~~l~~s----p~g~~~l~~~s~dg~I~iwd~~-~~~----~~~~~~-~~~-~~v~~v~~spdg~~l 498 (667)
+. .. ......++|+ |++..++++...++.|.+||.. ... ..+... .+. ..+..++++++|+++
T Consensus 167 ~~-~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 167 VD-TA-----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EE-EE-----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred ec-cC-----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 11 11 1346789999 9863344444567899999854 211 122221 122 567889999999988
Q ss_pred EEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEecCC
Q 005956 499 ISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 499 ~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
++...++.|.+||.++++...... .......++|+++|..|.++...
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 888788999999998655432222 22345567889999866665443
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=2.7e-10 Score=130.86 Aligned_cols=242 Identities=14% Similarity=0.117 Sum_probs=156.7
Q ss_pred ccccccEEEEEEcCCCCEEEEE-----ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCC
Q 005956 219 QAHKGCIWTLKFSPDGRYLASG-----GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDE 293 (667)
Q Consensus 219 ~~H~~~I~~v~fspdg~~Latg-----s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (667)
.+|...|..++|||||++||-+ +++..|+|||+.++....
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~----------------------------------- 169 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE----------------------------------- 169 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-----------------------------------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-----------------------------------
Confidence 3577789999999999999843 334679999998743210
Q ss_pred cccccCCcceeeeccccceEEEEecCCC-eEEEEeCCCc-------------EEEEecCCCeE--eEEee----CCCcEE
Q 005956 294 VFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMDKT-------------VRMWQVGCNQC--LNVFD----HHNYVT 353 (667)
Q Consensus 294 ~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~-------------I~iWd~~~~~~--~~~~~----h~~~V~ 353 (667)
..+. ......++|+ |+ .|+.++.+.. |++|++.++.. ...+. +...+.
T Consensus 170 ---------~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~ 237 (693)
T 3iuj_A 170 ---------TPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV 237 (693)
T ss_dssp ---------EEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE
T ss_pred ---------cccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE
Confidence 0111 1113567899 88 7877777743 99999987653 33443 234578
Q ss_pred EEEEeeCCCCEEEEEec----CCeEEEEecCCC--eEEEecccCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCC
Q 005956 354 CVQFNPIDDNYFISGSI----DGKVRIWGVCEK--RVVDWADVRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGN 423 (667)
Q Consensus 354 ~l~f~p~d~~~l~sgs~----Dg~v~iwdl~~~--~~~~~~~~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~ 423 (667)
.+.|+| ++++|+.... ...|+++|+.++ +...+.......... ++++|..|+..+.. +.|..+|+.+.
T Consensus 238 ~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 238 GATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 899999 8888765443 248999999876 455555555555554 67777777665542 57888888775
Q ss_pred ccee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC--cEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEE
Q 005956 424 DLKL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS--KLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIIS 500 (667)
Q Consensus 424 ~~~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 500 (667)
.... ..+..+. ..+. .|++++..++++...++ .|++||+...............+..+.++++++.|+.
T Consensus 316 ~~~~~~~l~~~~------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~ 387 (693)
T 3iuj_A 316 GPAHWRDLIPER------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYF 387 (693)
T ss_dssp CGGGCEEEECCC------SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred CccccEEEecCC------CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEE
Confidence 4311 1222111 2233 78888755555555555 6888987643322222224456777888888887766
Q ss_pred EeCC----CcEEEEEcCCCCc
Q 005956 501 IGDD----CRVYVWNYDELCF 517 (667)
Q Consensus 501 gs~D----g~I~iWd~~~~~~ 517 (667)
...+ +.|+.||+.+++.
T Consensus 388 ~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 388 GFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECSSSCCEEEEECTTTCCE
T ss_pred EecCCCCCCEEEEEECCCCeE
Confidence 6544 7899999987754
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.3e-09 Score=109.45 Aligned_cols=228 Identities=14% Similarity=0.025 Sum_probs=154.1
Q ss_pred cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
+..-..+..|++++ .+++...++.|..||..+++. ..+.....+.++++.| +++++++ . +..|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 33445678899854 566777789999999988765 4556678899999999 8885554 4 578999999988765
Q ss_pred Eeccc-----CCceEEEEEeeCCCEEEEEecC---------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC
Q 005956 386 DWADV-----RDVISAICYIPDGKGFIVGSIT---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD 451 (667)
Q Consensus 386 ~~~~~-----~~~v~~v~~spdg~~l~~gs~d---------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~ 451 (667)
.+... ...++.++++|+|+++++.... ....+|.+.......... .. ......++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~-----~~~pngi~~spd 159 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQ-----VDISNGLDWSLD 159 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EE-----ESBEEEEEECTT
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--ec-----cccccceEEcCC
Confidence 43322 2357889999999966544322 334566655322111111 11 134678999999
Q ss_pred CCeEEEEEeCCCcEEEEECC--cce----eeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc-
Q 005956 452 ESQRIMITSEDSKLRILDGV--DVI----HKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK- 523 (667)
Q Consensus 452 g~~~l~~~s~dg~I~iwd~~--~~~----~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~- 523 (667)
+..++++.+.++.|.+||.. +.. ..+... .....+..++++++|++.++...++.|.+||.++++.......
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 75555666778899999863 211 222221 1235678899999998888877788999999987765443332
Q ss_pred cCccceeEEc-cCCcEEEEecCCC
Q 005956 524 NSVRSCEHFF-SEGVSVAVQWPGI 546 (667)
Q Consensus 524 ~~~~~~~~fs-~dg~~lav~w~~~ 546 (667)
.....+++|. ||+..|.++....
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCceEEEEeCCCCCEEEEEcCCc
Confidence 2456678998 8888887765543
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.3e-09 Score=116.80 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=160.7
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
...+.|+|+++|+++++...++.|++||..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~--------------------------------------------- 165 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT--------------------------------------------- 165 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------------------------
Confidence 35789999999998888888899999998753221
Q ss_pred eeeeccccceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEe----e-CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVF----D-HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~----~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.+........ ++|++++ .|+.+..++ .|.+|+...+.....+ . ....+.+++++| ++..|+.+..++.|
T Consensus 166 -~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I 242 (409)
T 3hrp_A 166 -TVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNF 242 (409)
T ss_dssp -EEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEE
T ss_pred -EeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcE
Confidence 1111122233 8899998 788887766 7888888766544444 2 446778999999 55566667778899
Q ss_pred EEEecCCCeEEEe----c-ccCCce-E-EEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeecc-c--------cC
Q 005956 375 RIWGVCEKRVVDW----A-DVRDVI-S-AICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHD-R--------KK 437 (667)
Q Consensus 375 ~iwdl~~~~~~~~----~-~~~~~v-~-~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~-~--------~~ 437 (667)
+.||..++....+ . ...... . .++|+|+ +..+++-..++.|+.|+.... . ..+.-.. . ..
T Consensus 243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~--~~~~g~~~~~g~~dg~~~~ 319 (409)
T 3hrp_A 243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-C--EWFCGSATQKTVQDGLREE 319 (409)
T ss_dssp EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E--EEEEECTTCCSCBCEEGGG
T ss_pred EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-E--EEEEeCCCCCCcCCCcccc
Confidence 9999988764433 1 111111 3 9999995 555555566788999987654 1 1111110 0 00
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCc-ceeeEEeCC-------------CCCCeEEEEEcCCCCEEEEEe
Q 005956 438 TSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVD-VIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~-~~~~~~~~~-------------~~~~v~~v~~spdg~~l~sgs 502 (667)
........++++|+| .++++-. .++.|+.||..+ .+..+.+.. .-.....++++++|.++++-.
T Consensus 320 ~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~ 398 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA 398 (409)
T ss_dssp CBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred cEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence 112457899999997 5666666 788999999543 334444421 124588999999988888878
Q ss_pred CCCcEEEEEcC
Q 005956 503 DDCRVYVWNYD 513 (667)
Q Consensus 503 ~Dg~I~iWd~~ 513 (667)
.++.|+.++++
T Consensus 399 ~n~~Ir~i~~e 409 (409)
T 3hrp_A 399 WGKAIRKYAVE 409 (409)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 88889887753
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.27 E-value=8.9e-11 Score=123.71 Aligned_cols=186 Identities=4% Similarity=-0.009 Sum_probs=131.5
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 224 CIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 224 ~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
.++.+++++.+.+|++|+.++ ++||++.+...... . . .+ ...+..
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~---~-------~-~~-----------------------~~~~~~ 83 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT---S-------D-ST-----------------------PLTFKW 83 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH---S-------S-SC-----------------------CCCCSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc---c-------c-cc-----------------------cccceE
Confidence 689999999999999999986 66799875220000 0 0 00 001212
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
. ..+.. |+.|+| ++ .|+++ .++.|++||+.+....... .|...+.++.+.+ . .+++++.||.|.+||+.+
T Consensus 84 ~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 84 E-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp E-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTT
T ss_pred E-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccC
Confidence 2 23566 999999 66 77777 8899999999766543333 4777888888776 2 388889999999999998
Q ss_pred CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce-eeeEeeccccC---cCCCCeEEEEEccCCCeEEE
Q 005956 382 KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK-LEKVDFHDRKK---TSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 382 ~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~-~~~~~~~~~~~---~~~~~I~~l~~sp~g~~~l~ 457 (667)
+.... +...|+|+||+|+| +++|..||++++|+..+.... ...+....... .+...|.+++|.+++ .+++
T Consensus 156 ~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv 229 (388)
T 1xip_A 156 KSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLA 229 (388)
T ss_dssp CCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEE
T ss_pred Ccccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEE
Confidence 87654 45689999999999 788999999999998876642 12221111111 245889999999985 5555
Q ss_pred E
Q 005956 458 I 458 (667)
Q Consensus 458 ~ 458 (667)
+
T Consensus 230 ~ 230 (388)
T 1xip_A 230 V 230 (388)
T ss_dssp E
T ss_pred E
Confidence 4
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=5.3e-09 Score=106.77 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=151.0
Q ss_pred cccccEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCccccc
Q 005956 220 AHKGCIWTLKFSPD-GRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIE 298 (667)
Q Consensus 220 ~H~~~I~~v~fspd-g~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (667)
.+..---+..|+|+ +.++++...++.|..||..+...
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------------------------ 47 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------------------------ 47 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------------------------
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------------------------
Confidence 34445567889995 55666767789999999875321
Q ss_pred CCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeC-----CCcEEEEEEeeCCCCEEEEEecC--
Q 005956 299 ESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSID-- 371 (667)
Q Consensus 299 ~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~d~~~l~sgs~D-- 371 (667)
..+ .+...+.++++++++.|+.+. +..|.+||..+++....... ...+..+++.| +++++++....
T Consensus 48 ----~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~ 120 (297)
T 3g4e_A 48 ----QRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEET 120 (297)
T ss_dssp ----EEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCS
T ss_pred ----EEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccc
Confidence 111 234568899999999555555 56899999998876544432 23588999999 88876654322
Q ss_pred ---------CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEE-EecCCcEEEEEec--CCcceeeeEeeccccCcC
Q 005956 372 ---------GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIV-GSITGTCHFYKAS--GNDLKLEKVDFHDRKKTS 439 (667)
Q Consensus 372 ---------g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~-gs~dg~i~l~d~~--~~~~~~~~~~~~~~~~~~ 439 (667)
+.|..++.. ++...........+.++|+||++.+++ .+.++.|.+|++. ++.+........ ....
T Consensus 121 ~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~~~ 197 (297)
T 3g4e_A 121 APAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--LEKE 197 (297)
T ss_dssp BTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--CCGG
T ss_pred ccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--CCCC
Confidence 234444443 444444444456789999999987755 4567899999984 443321111111 1111
Q ss_pred CCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeC
Q 005956 440 GNKITGIQFSRDESQRIMITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFT-TTGKHIISIGD 503 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~ 503 (667)
......+++.++| ++.++...++.|.+||..+ ....+.. +...+++++|. |+++.|+.++.
T Consensus 198 ~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 198 EQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 2467889999997 6777777788999999763 3444443 45678999998 88887776654
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=1e-08 Score=108.31 Aligned_cols=221 Identities=9% Similarity=-0.055 Sum_probs=145.1
Q ss_pred EEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEec--CC
Q 005956 314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 372 (667)
Q Consensus 314 ~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs~--Dg 372 (667)
.++++||+ +|+.+. .+++|.+||..+.+.+..+... .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 89999999 666654 3678999999998887776432 3456899999 9999998874 47
Q ss_pred eEEEEecCCCeEEEe-cccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC-eEEEEEc
Q 005956 373 KVRIWGVCEKRVVDW-ADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFS 449 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~-~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~-I~~l~~s 449 (667)
.|.++| .+++++.. ...... +.+.|++ +.+++.+.||.+.++|. +++.... ....... ....+ .....+.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~-~~~~~~~-~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA-GLVGAML-TAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE-Eeccccc-cCCcceeecceeE
Confidence 899999 99988765 554433 4555665 45566778999999999 6654421 1100000 11122 2335667
Q ss_pred cCCCeEEEEEeCCCcEEEEECCcc----eeeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCcE
Q 005956 450 RDESQRIMITSEDSKLRILDGVDV----IHKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRV 507 (667)
Q Consensus 450 p~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------Dg~I 507 (667)
+++..++++. ..+.+.+.|+... ...+.... .......+.++|+++.|+++.. ++.|
T Consensus 222 ~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 222 NKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 7764444444 6789999997532 11221100 0122344788999998888653 3579
Q ss_pred EEEEcCCCCccccccccCccceeEEccCCc-EEEEec
Q 005956 508 YVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQW 543 (667)
Q Consensus 508 ~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav~w 543 (667)
.++|..+.+.............+.|+|||+ .+.++.
T Consensus 301 ~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 301 TSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred EEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 999999987755544444566789999999 455543
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1.4e-09 Score=111.58 Aligned_cols=234 Identities=11% Similarity=0.084 Sum_probs=156.4
Q ss_pred eeccccccEEEEEEcCCCC-EEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 217 EIQAHKGCIWTLKFSPDGR-YLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 217 ~l~~H~~~I~~v~fspdg~-~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
.+..+........|+|+|+ +++++..++.|..|+... .
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~---------------------------------------- 77 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T---------------------------------------- 77 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C----------------------------------------
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C----------------------------------------
Confidence 3444556677899999998 667777788999998742 1
Q ss_pred cccCCcceeeeccccceEEEEecCCCeEEEEe-CCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEE--
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNSNYLLSCS-MDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFIS-- 367 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s-~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~s-- 367 (667)
...+..+...+..++++++|.|+.+. .++.|.+|+.. ++...... ....+..+++.| +++++++
T Consensus 78 ------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~ 149 (305)
T 3dr2_A 78 ------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDP 149 (305)
T ss_dssp ------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECC
T ss_pred ------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCc
Confidence 22333455668899999999555554 45789999986 55433322 123467899999 8888876
Q ss_pred --Eec-------------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC------CcEEEEEecCCcce
Q 005956 368 --GSI-------------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLK 426 (667)
Q Consensus 368 --gs~-------------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~ 426 (667)
|.. .+.|..||..++++.... .....+.++|+||++.|+++... +.|.+|++....+.
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~ 228 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH 228 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE
T ss_pred CCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc
Confidence 332 256888888777765544 44567889999999988887665 68999999865421
Q ss_pred eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 427 LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 427 ~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
........ .......+++.++| + |.++..+ .|.+||... ....+.. .. .+.+++|+++++.|+.++.++
T Consensus 229 ~~~~~~~~----~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 229 DRRHFASV----PDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEEEECC----SSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTE
T ss_pred CCeEEEEC----CCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCe
Confidence 11111111 12345678999997 4 4444444 499999753 3334443 22 578899999999998888654
Q ss_pred cEEEEE
Q 005956 506 RVYVWN 511 (667)
Q Consensus 506 ~I~iWd 511 (667)
++.++
T Consensus 299 -l~~~~ 303 (305)
T 3dr2_A 299 -LWMLP 303 (305)
T ss_dssp -EEEEE
T ss_pred -EEEEE
Confidence 44443
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.9e-09 Score=115.46 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=158.4
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC--eEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~iwdl~~~~~~~ 386 (667)
.....|+|++++ ++++...++.|++||..++............. ++|+| +++.|+++..++ .|.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999 55566667899999999888777665444444 99999 888888888766 79999987654322
Q ss_pred ec----c-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 387 WA----D-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 387 ~~----~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
.. . ....+.+++++|++..|+++..++.|+.||..+...... .....+. ....+...++|+|+++.++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~--~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS--LGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC--CCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC--CCCCccccEEEeCCCCEEEEEeC
Confidence 21 2 446678899999555666677788999999886653221 0001110 00111239999996557777777
Q ss_pred CCCcEEEEECCcceeeEEeCC-------------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc---
Q 005956 461 EDSKLRILDGVDVIHKFKGLP-------------KSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK--- 523 (667)
Q Consensus 461 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~--- 523 (667)
.++.|+.|+.......+.+.. .-.....++++++|+++++-. .++.|+.|++.++........
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~ 366 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV 366 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC
Confidence 888999999765455554432 024578999999999777777 789999999777654322111
Q ss_pred ------------cCccceeEEccCCcEEEEecCC
Q 005956 524 ------------NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 524 ------------~~~~~~~~fs~dg~~lav~w~~ 545 (667)
-.....+++.++|.++++.|..
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 1123457888888777766553
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.23 E-value=7.6e-09 Score=104.73 Aligned_cols=235 Identities=7% Similarity=0.072 Sum_probs=160.5
Q ss_pred ccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 221 HKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 221 H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
+...+.+|++.++|+++++...++.|.+||.. +....
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~------------------------------------------ 96 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE------------------------------------------ 96 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE------------------------------------------
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE------------------------------------------
Confidence 34678999999999988877667888888765 22110
Q ss_pred cceeeeccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEE-ee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNV-FD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
..+......+.++++.+++ ++++...++.|..||.. ++.... +. ....+.++++.+ +++++++...++.|..|
T Consensus 97 --~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 97 --YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp --EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred --ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 0111123467889999888 55555557899999988 655432 22 346789999999 88877766667899999
Q ss_pred ecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 378 GVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 378 dl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
|. +++...+. .....+..++++++|+.+++....+.|.+|+. ++.... .... .....+.++++.++| .+
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~~----~~~~~~~~i~~d~~g-~l 243 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YDIP----TPNARPHAITAGKNS-EI 243 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EECS----STTCCEEEEEECSTT-CE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EECC----CCCCCceEEEECCCC-CE
Confidence 98 55554432 23456889999999977666666778999998 333221 1111 123568899999996 55
Q ss_pred EEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 456 IMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
+++...++.|..||.......+........+.+++++++|++.++.. . .|..++.+
T Consensus 244 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 244 WFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 55555678999999854444444433456688899999998666554 4 67777653
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.22 E-value=1.7e-09 Score=115.51 Aligned_cols=262 Identities=9% Similarity=0.052 Sum_probs=165.8
Q ss_pred ccceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccC
Q 005956 213 YTSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKK 282 (667)
Q Consensus 213 ~~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (667)
....++..-..+ .++++|||++|+.+. .++.|.++|..+.........+.
T Consensus 110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g------------------ 169 (426)
T 3c75_H 110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD------------------ 169 (426)
T ss_dssp EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT------------------
T ss_pred EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC------------------
Confidence 333444433445 799999999888775 46789999998754321100000
Q ss_pred CCCceeecCCCcccccCCcceeeeccccceEEEEecCCC-eEEEEeC--CCcEEEEecCCCeEeEEeeCCCcEEEEEEee
Q 005956 283 SSHVPVVIPDEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSM--DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNP 359 (667)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~--Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p 359 (667)
.+ .+ ........+.|+||+ +|+.+.. +++|.+.|+.+++.+..+.-... ....|
T Consensus 170 ----------------~~---r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p 226 (426)
T 3c75_H 170 ----------------AP---RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFP 226 (426)
T ss_dssp ----------------CC---CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEE
T ss_pred ----------------cc---cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeecc
Confidence 00 00 001224567899999 7777654 57899999999999988874432 33445
Q ss_pred CCCCEEEEEecCCeEEEEecCCCeEEEe----ccc-CCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEee
Q 005956 360 IDDNYFISGSIDGKVRIWGVCEKRVVDW----ADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDF 432 (667)
Q Consensus 360 ~d~~~l~sgs~Dg~v~iwdl~~~~~~~~----~~~-~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~ 432 (667)
.....+++.+.||++.+.++.++++... ... ... ...+.|.+++..++..+..|.+.+.|+.+...... .+.+
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 3446777788899988888866665421 111 111 22356789999888888899999999976543322 2221
Q ss_pred ccccC-c---CCCCeEEEEEccCCCeEEEEEe---------CCCcEEEEECCcc--eeeEEeCCCCCCeEEEEEcCCCC-
Q 005956 433 HDRKK-T---SGNKITGIQFSRDESQRIMITS---------EDSKLRILDGVDV--IHKFKGLPKSGSQMSASFTTTGK- 496 (667)
Q Consensus 433 ~~~~~-~---~~~~I~~l~~sp~g~~~l~~~s---------~dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~spdg~- 496 (667)
..... . .......+.++|++...+++.. ..+.|.++|..+. +..+.. ......+.|+|||+
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~ 383 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEP 383 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSC
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCE
Confidence 10000 0 0112223689999754444433 1357999998754 344433 23578999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCCCcccc
Q 005956 497 HIISIG-DDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 497 ~l~sgs-~Dg~I~iWd~~~~~~~~~ 520 (667)
+++++. .++.|.|+|..+.+....
T Consensus 384 ~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCCEEEE
Confidence 888888 589999999999876544
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=9.8e-09 Score=106.39 Aligned_cols=223 Identities=11% Similarity=0.005 Sum_probs=147.1
Q ss_pred cEEEEEEcCCC-CEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 224 CIWTLKFSPDG-RYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 224 ~I~~v~fspdg-~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
-..+..|+|++ .++++...++.|.+|+..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---------------------------------------------- 83 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---------------------------------------------- 83 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------------------------
Confidence 34678899974 4666666788999999875321
Q ss_pred eeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeC-----CCcEEEEEEeeCCCCEEEEEec------C
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH-----HNYVTCVQFNPIDDNYFISGSI------D 371 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~d~~~l~sgs~------D 371 (667)
..+. +...+.+++|++++.++.++.+ .|.+||..+++....... ...+..++++| +++++++... .
T Consensus 84 ~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 84 TVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGA 160 (326)
T ss_dssp EEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTC
T ss_pred EEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCc
Confidence 1111 2346889999999955545554 499999988876544332 23688999999 8887665542 2
Q ss_pred CeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEec--CC-cceee-eE-eeccccCcCCCCeEE
Q 005956 372 GKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKAS--GN-DLKLE-KV-DFHDRKKTSGNKITG 445 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~--~~-~~~~~-~~-~~~~~~~~~~~~I~~ 445 (667)
+.|..++ +++.............++|+|+|+.++++ +.++.|.+||+. ++ ..... .+ .+. ........
T Consensus 161 ~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~----~~~~~p~g 234 (326)
T 2ghs_A 161 GSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDG 234 (326)
T ss_dssp EEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEE
T ss_pred eEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC----CCCCCCCe
Confidence 4566666 56655444444567899999999877665 456899999986 44 32211 11 111 11245678
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCc-ceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeCC
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVD-VIHKFKGLPKSGSQMSASFT-TTGKHIISIGDD 504 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~D 504 (667)
+++.++| .++++...++.|.+||... ....+.. +...+.+++|+ ++++.|+.++..
T Consensus 235 i~~d~~G-~lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 235 SVCDAEG-HIWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEECTTS-CEEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred eEECCCC-CEEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 9999986 6666666678999999742 2333433 45578999998 888877665543
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=3.1e-08 Score=102.59 Aligned_cols=223 Identities=11% Similarity=0.035 Sum_probs=145.5
Q ss_pred ceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956 311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 311 ~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~ 388 (667)
-.....|++++ .+++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++...+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 35678899974 5667777899999999887653 345567899999999 88776654 3 45999999888765443
Q ss_pred cc-----CCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 389 DV-----RDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 389 ~~-----~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.. ...++.++++|+|+.+++...+ +...||.+.+++.. .+. .. ......++|+|+|..++++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~--~~~-~~-----~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT--KLF-AD-----ISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE--EEE-EE-----ESSEEEEEECTTSCEEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE--Eee-CC-----CcccCCeEEcCCCCEEEEEE
Confidence 22 2358899999999866544321 22344444333322 111 11 13467899999974455555
Q ss_pred eCCCcEEEEECC--cc-e----eeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc-cccCcccee
Q 005956 460 SEDSKLRILDGV--DV-I----HKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK-QKNSVRSCE 530 (667)
Q Consensus 460 s~dg~I~iwd~~--~~-~----~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~ 530 (667)
+.++.|.+||.. +. . ..+... .....+..++++++|.+.++...++.|.+|+.. ++..... .......++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEE
Confidence 667899999964 22 1 222221 123456789999999988877677889999984 4332222 222345677
Q ss_pred EEc-cCCcEEEEecCCC
Q 005956 531 HFF-SEGVSVAVQWPGI 546 (667)
Q Consensus 531 ~fs-~dg~~lav~w~~~ 546 (667)
+|. +++..|.++....
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 898 8888776654443
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=1.1e-09 Score=114.31 Aligned_cols=261 Identities=13% Similarity=0.072 Sum_probs=164.5
Q ss_pred ccEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 223 GCIWTLKFSPDGRYLASGG--EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs--~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
.....|+++|+|+++++.. .++.++||.+.++.. ..|. .. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~--~~~p-----------------------------~~------~ 59 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL--IPFP-----------------------------PQ------S 59 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE--EESC-----------------------------CC------C
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe--ecCC-----------------------------Cc------c
Confidence 6789999999999988864 234467776643211 0110 00 0
Q ss_pred cceeeeccccceEEEEecCCCeEEEEeC------CCcEEEEecCCCeEeEEeeC-------CCcEEEEEEeeCCCCEEEE
Q 005956 301 PLQELHGHKGDVLDLAWSNSNYLLSCSM------DKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFIS 367 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~------Dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~d~~~l~s 367 (667)
....+|...+..+++.+++.|+.+.. ++.|.+||+.+++.+..+.. ...+..+++.+.++..+++
T Consensus 60 --~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 60 --GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp --SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred --cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 01124667899999999995554432 57899999999997777642 2356899999833444455
Q ss_pred Ee---cCCeEEEEecCCCeEEEeccc-CCc-eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 368 GS---IDGKVRIWGVCEKRVVDWADV-RDV-ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 368 gs---~Dg~v~iwdl~~~~~~~~~~~-~~~-v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
.. .++.|.+||+.+++....... ... .....+.++|..+.+...+|.+..|. ..
T Consensus 138 d~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------------~~ 196 (343)
T 2qe8_A 138 DPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------------LG 196 (343)
T ss_dssp ECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------------CC
T ss_pred cCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------------cc
Confidence 54 678999999998887664432 111 10144556777777677776654331 23
Q ss_pred eEEEEEccCCCeEEEEEeCCC-cEEEEECCcc----------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 443 ITGIQFSRDESQRIMITSEDS-KLRILDGVDV----------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg-~I~iwd~~~~----------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
+..|+|+|+| +.|+.+...+ .|+.++.... ...+....+......++++++|.++++...++.|.+||
T Consensus 197 ~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 197 VNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred cceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 5789999997 5666665554 6666653210 00111111233556789999999999988899999999
Q ss_pred cCCCCccccccc--cCccceeEEccCCcEEEEecC
Q 005956 512 YDELCFPSSKQK--NSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 512 ~~~~~~~~~~~~--~~~~~~~~fs~dg~~lav~w~ 544 (667)
..+++....... ......++|.++|.++++...
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 855543222211 223446789898887776543
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.17 E-value=4.1e-09 Score=110.63 Aligned_cols=259 Identities=10% Similarity=0.025 Sum_probs=168.6
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 228 LKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 228 v~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
....|+++.++.... ++.|.+.|..+... +
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------------------------~ 72 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------------------------I 72 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------------------------E
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------------------------E
Confidence 345789998888766 67899999886332 3
Q ss_pred eeeeccccceEEEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCC
Q 005956 303 QELHGHKGDVLDLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDN 363 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~ 363 (667)
.++..-..+ . ++++|++ +|+.+. .+++|.+||..+++.+..+.-. .....++|+| |++
T Consensus 73 ~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk 149 (386)
T 3sjl_D 73 GMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGK 149 (386)
T ss_dssp EEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSS
T ss_pred EEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCC
Confidence 333322233 3 9999999 565554 3678999999999998887521 2466799999 999
Q ss_pred EEEEEec--CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC-CcceeeeEeeccccCcCC
Q 005956 364 YFISGSI--DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG-NDLKLEKVDFHDRKKTSG 440 (667)
Q Consensus 364 ~l~sgs~--Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~ 440 (667)
+++++.. ++.|.++|+.+++++......+. ...+....+.+++.+.||.+.+.++.. ++.... . ........
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~-~--~~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT-H--TEVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE-E--CCCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEe-e--cceecccc
Confidence 9888864 68999999999998865544332 223333456777888899999999876 444211 1 01111111
Q ss_pred CCeE-EEEEc-cCCCeEEEEEeCCCcEEEEECCcc----eeeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC---
Q 005956 441 NKIT-GIQFS-RDESQRIMITSEDSKLRILDGVDV----IHKFKGLP--------KSGSQMSASFTTTGKHIISIGD--- 503 (667)
Q Consensus 441 ~~I~-~l~~s-p~g~~~l~~~s~dg~I~iwd~~~~----~~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~--- 503 (667)
.++. ...|. ++| ++++ .+.+|.|++.|+... ...+.... .......++++++++.|+....
T Consensus 225 ~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 225 EFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 302 (386)
T ss_dssp SCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred ccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence 2222 24664 564 4444 666899999997532 22222000 0112234677999999888743
Q ss_pred -------CCcEEEEEcCCCCccccccccCccceeEEccCCc-EEEE
Q 005956 504 -------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAV 541 (667)
Q Consensus 504 -------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav 541 (667)
.+.|.+.|..+.+.............+.|++|++ .|.+
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence 2579999999998765554444455679999997 4444
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=1.4e-08 Score=104.06 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=147.8
Q ss_pred CcceeeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 300 SPLQELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
..+..+..+........|++++ ++++...++.|..|+. +++......+...+..+++.+ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 3455566666677889999987 4667777899999998 455433334667899999999 88876665566889999
Q ss_pred ecCCCeEEEeccc-----CCceEEEEEeeCCCEEEE----Eec-------------CCcEEEEEecCCcceeeeEeeccc
Q 005956 378 GVCEKRVVDWADV-----RDVISAICYIPDGKGFIV----GSI-------------TGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 378 dl~~~~~~~~~~~-----~~~v~~v~~spdg~~l~~----gs~-------------dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
+.. ++...+... ...++.++++|+|+.+++ |+. .+.|..||..+++..... .
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~- 186 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----D- 186 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----E-
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----c-
Confidence 986 554433221 234678999999998776 332 245666666555443221 1
Q ss_pred cCcCCCCeEEEEEccCCCeEEEEEeCC------CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 436 KKTSGNKITGIQFSRDESQRIMITSED------SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 436 ~~~~~~~I~~l~~sp~g~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
......++|+|++ +.|+++... +.|++||+.... ..+... .......++++++|++.++ ..+
T Consensus 187 ----~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~- 258 (305)
T 3dr2_A 187 ----LDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT- 258 (305)
T ss_dssp ----ESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS-
T ss_pred ----CCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC-
Confidence 1456789999997 555555544 789999865321 111111 2344567899999995544 444
Q ss_pred cEEEEEcCCCCccccccccCccceeEEccCCcEEEEecC
Q 005956 506 RVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
.|++|+.+.. .............++|.+++..|.++..
T Consensus 259 gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 259 GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 4999998543 3222222223556789898888877654
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=9.7e-09 Score=108.17 Aligned_cols=133 Identities=8% Similarity=0.041 Sum_probs=105.6
Q ss_pred cccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccC
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEE 299 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (667)
.+.+ |+.|+| |+++|+++ .++.|++||+.+..
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-------------------------------------------- 117 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-------------------------------------------- 117 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--------------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--------------------------------------------
Confidence 4666 999999 99999999 88999999998632
Q ss_pred CcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 300 SPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 300 ~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
.......|...|.++.+.+.+ +++++.||+|.+||+.++.... +...|+|++|+| +| ++.|..||++++|+.
T Consensus 118 -~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 118 -EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp -CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEE
T ss_pred -ccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcC
Confidence 122334556667787776544 8889999999999999887654 456899999999 77 678999999999999
Q ss_pred CCCeE--EE-e------c---ccCCceEEEEEeeCCCEEEE
Q 005956 380 CEKRV--VD-W------A---DVRDVISAICYIPDGKGFIV 408 (667)
Q Consensus 380 ~~~~~--~~-~------~---~~~~~v~~v~~spdg~~l~~ 408 (667)
..+.+ .. + . .+...|.+++|.+++.++++
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 88774 22 2 1 25678999999999988876
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.05 E-value=1.5e-08 Score=108.07 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=145.8
Q ss_pred EEEecCCC-eEEEEe----------CCCcEEEEecCCCeEeEEeeCC--------CcEEEEEEeeCCCCEEEEEec--CC
Q 005956 314 DLAWSNSN-YLLSCS----------MDKTVRMWQVGCNQCLNVFDHH--------NYVTCVQFNPIDDNYFISGSI--DG 372 (667)
Q Consensus 314 ~l~~s~~~-~l~s~s----------~Dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~d~~~l~sgs~--Dg 372 (667)
.+.++|++ +|+.+. .++.|.++|..+++.+..+... .....+.|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 79999999 565554 4679999999999998877532 3456789999 9999998874 57
Q ss_pred eEEEEecCCCeEEEecccCCceEEEEEeeCC-CEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC-eEEEEEcc
Q 005956 373 KVRIWGVCEKRVVDWADVRDVISAICYIPDG-KGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK-ITGIQFSR 450 (667)
Q Consensus 373 ~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg-~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~-I~~l~~sp 450 (667)
.|.+.|+.+++++........ ....|+| +.+++.+.||.+.+.++.+++.... .. ........+ ...+.|.+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~--~~~~v~~~p~~~~~~~~~ 274 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NT--EVFHTEDELLINHPAFSL 274 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-EC--CCCSCTTSCBCSCCEECT
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-ee--eeeccCCCceeeEeeecC
Confidence 899999999998765444332 2344544 5566677788888888854443321 00 000000111 12456788
Q ss_pred CCCeEEEEEeCCCcEEEEECCcce----eeEEeCC--------CCCCeEEEEEcCCCCEEEEEeC----------CCcEE
Q 005956 451 DESQRIMITSEDSKLRILDGVDVI----HKFKGLP--------KSGSQMSASFTTTGKHIISIGD----------DCRVY 508 (667)
Q Consensus 451 ~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~--------~~~~v~~v~~spdg~~l~sgs~----------Dg~I~ 508 (667)
++ ..++..+..+.|.+.|..... ..+.... .......++++|+++.+++... ++.|.
T Consensus 275 dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 275 RS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 86 455555678899999975321 1111100 0011113689999998877642 35799
Q ss_pred EEEcCCCCccccccccCccceeEEccCCc-EEEEecCC
Q 005956 509 VWNYDELCFPSSKQKNSVRSCEHFFSEGV-SVAVQWPG 545 (667)
Q Consensus 509 iWd~~~~~~~~~~~~~~~~~~~~fs~dg~-~lav~w~~ 545 (667)
+.|..+.+.............+.|+|||+ .+.+++..
T Consensus 354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT
T ss_pred EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC
Confidence 99999988765554444456679999999 77776643
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=8.7e-09 Score=118.29 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=142.5
Q ss_pred ccccceEEEEecCCC-eEEE-Ee----CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCC--------
Q 005956 307 GHKGDVLDLAWSNSN-YLLS-CS----MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDG-------- 372 (667)
Q Consensus 307 gh~~~V~~l~~s~~~-~l~s-~s----~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg-------- 372 (667)
+|...+..++||||| +|+. .+ .+.+|++||+.+++.+...........++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 355678899999999 5653 22 2357999999999876542221113567898 677888877774
Q ss_pred -----eEEEEecCCCe----EEE-ecc-cCCceEEEEEeeCCCEEEEEecC----CcEEEEEecCCcceeeeEeeccccC
Q 005956 373 -----KVRIWGVCEKR----VVD-WAD-VRDVISAICYIPDGKGFIVGSIT----GTCHFYKASGNDLKLEKVDFHDRKK 437 (667)
Q Consensus 373 -----~v~iwdl~~~~----~~~-~~~-~~~~v~~v~~spdg~~l~~gs~d----g~i~l~d~~~~~~~~~~~~~~~~~~ 437 (667)
.|++|++.+.. ++. ... +...+..+.++|||++|++.... ..|.++|+.+.......+...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~---- 279 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD---- 279 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS----
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC----
Confidence 39999998754 222 222 34457889999999998765532 488999987664333322221
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeCC---CcEEEEECCcce----eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC---cE
Q 005956 438 TSGNKITGIQFSRDESQRIMITSED---SKLRILDGVDVI----HKFKGLPKSGSQMSASFTTTGKHIISIGDDC---RV 507 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~d---g~I~iwd~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg---~I 507 (667)
....... ++++|..+++.+..+ +.|.++|+.... ..+.. +...+. .|++++++|+....++ .|
T Consensus 280 --~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 280 --LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 1333343 666666677776654 579999987532 23333 444444 8899999888776544 68
Q ss_pred EEEEcCCCCccccc-cccCccceeEEccCCcEEEEecC
Q 005956 508 YVWNYDELCFPSSK-QKNSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 508 ~iWd~~~~~~~~~~-~~~~~~~~~~fs~dg~~lav~w~ 544 (667)
++|+++++...... ........+.+++++..+++...
T Consensus 353 ~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 353 EQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp EEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred EEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence 99998865432221 12223334566778877776544
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.00 E-value=1.4e-07 Score=99.78 Aligned_cols=190 Identities=9% Similarity=0.095 Sum_probs=127.0
Q ss_pred eEEEEecCCCeEEEEeCC------CcEEEEecCCCeEeEEeeCC----CcEEEEEEeeCCCCEEEEEe------------
Q 005956 312 VLDLAWSNSNYLLSCSMD------KTVRMWQVGCNQCLNVFDHH----NYVTCVQFNPIDDNYFISGS------------ 369 (667)
Q Consensus 312 V~~l~~s~~~~l~s~s~D------g~I~iWd~~~~~~~~~~~h~----~~V~~l~f~p~d~~~l~sgs------------ 369 (667)
-..+...|+|.++++..+ +.|.+.|..+.+.+..+... ..-+.+.|+| +.+.+++..
T Consensus 140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccc
Confidence 455677899955555544 78999999999999988522 2344678899 888888874
Q ss_pred -------cCCeEEEEecCCCeEEEecccC---CceEEEEE--eeCCCEEEEEec------CCcEEEEEecCCcceee-eE
Q 005956 370 -------IDGKVRIWGVCEKRVVDWADVR---DVISAICY--IPDGKGFIVGSI------TGTCHFYKASGNDLKLE-KV 430 (667)
Q Consensus 370 -------~Dg~v~iwdl~~~~~~~~~~~~---~~v~~v~~--spdg~~l~~gs~------dg~i~l~d~~~~~~~~~-~~ 430 (667)
.+.+|.+||+.+++++...... .....+.| +|+|+++.+++. +++|.+|....+..... .+
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence 3689999999998877644442 34555655 999999888774 56888877765544333 22
Q ss_pred eeccccCc------------CCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-----ceeeEEeCCC-----------
Q 005956 431 DFHDRKKT------------SGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-----VIHKFKGLPK----------- 482 (667)
Q Consensus 431 ~~~~~~~~------------~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-----~~~~~~~~~~----------- 482 (667)
.+...... .......|.+++||..+.++.-..+.|.+||+.+ .+.....-+.
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 22111000 0245789999999844444445578999999752 1222221100
Q ss_pred -CCCeEEEEEcCCCCEEEEEe
Q 005956 483 -SGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 483 -~~~v~~v~~spdg~~l~sgs 502 (667)
.+....+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 01357899999999999987
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=8.3e-09 Score=108.29 Aligned_cols=247 Identities=7% Similarity=-0.044 Sum_probs=150.5
Q ss_pred cceeeccccccEEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCC
Q 005956 214 TSQEIQAHKGCIWTLKFSPDGRYLASGG----------EDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKS 283 (667)
Q Consensus 214 ~~~~l~~H~~~I~~v~fspdg~~Latgs----------~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (667)
...++..-..+ .+.|+|||++|+.+. .++.|.+||..++..
T Consensus 58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--------------------------- 108 (368)
T 1mda_H 58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--------------------------- 108 (368)
T ss_dssp EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------------------------
T ss_pred EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------------------------
Confidence 33444433445 799999999888886 368899999997543
Q ss_pred CCceeecCCCcccccCCcceeeecc-------ccceEEEEecCCC-eEEEEeC--CCcEEE--EecCCCeEeEEeeCCCc
Q 005956 284 SHVPVVIPDEVFQIEESPLQELHGH-------KGDVLDLAWSNSN-YLLSCSM--DKTVRM--WQVGCNQCLNVFDHHNY 351 (667)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~gh-------~~~V~~l~~s~~~-~l~s~s~--Dg~I~i--Wd~~~~~~~~~~~h~~~ 351 (667)
+.++.-+ ......++++||| +|+.+.. +..|.+ +|+.+ +..+.....
T Consensus 109 ------------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~ 167 (368)
T 1mda_H 109 ------------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC 167 (368)
T ss_dssp ------------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC
T ss_pred ------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc
Confidence 2222211 1234578999999 7777664 467888 99877 444432221
Q ss_pred EEEEEEeeCCCCEEEEEecCCeEEEEecCC-----CeEEE----ecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEec
Q 005956 352 VTCVQFNPIDDNYFISGSIDGKVRIWGVCE-----KRVVD----WAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKAS 421 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-----~~~~~----~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~ 421 (667)
+.+.|.....+++.+.|+.+.+.|+.+ +++.. ... ...+. . .+++..++..+. +.+.+.|+.
T Consensus 168 ---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~ 239 (368)
T 1mda_H 168 ---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIP 239 (368)
T ss_dssp ---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECC
T ss_pred ---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECC
Confidence 223453455667777899998899887 44331 111 12222 3 677777777777 999999987
Q ss_pred CCcceee-eEeeccc----cCcCCCCeEEEEEccCCCeEEEEEe---C-----CCcEEEEECCcc--eeeEEeCCCCCCe
Q 005956 422 GNDLKLE-KVDFHDR----KKTSGNKITGIQFSRDESQRIMITS---E-----DSKLRILDGVDV--IHKFKGLPKSGSQ 486 (667)
Q Consensus 422 ~~~~~~~-~~~~~~~----~~~~~~~I~~l~~sp~g~~~l~~~s---~-----dg~I~iwd~~~~--~~~~~~~~~~~~v 486 (667)
+...... .+.+... ..........+.++|++...+++.. . ++.+.++|+.+. +..+.. ....
T Consensus 240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p 316 (368)
T 1mda_H 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDS 316 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEE
T ss_pred CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCc
Confidence 5432211 2211100 0000011222689999755444444 2 245669998754 333332 2257
Q ss_pred EEEEEcCCCCE-EEEEe-CCCcEEEEEcCCCCccccc
Q 005956 487 MSASFTTTGKH-IISIG-DDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 487 ~~v~~spdg~~-l~sgs-~Dg~I~iWd~~~~~~~~~~ 521 (667)
..++|+|||++ +++.. .++.|.++|+.+.+.....
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 88999999984 55555 5899999999998765443
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=6.5e-06 Score=82.09 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=127.8
Q ss_pred cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~ 386 (667)
..+..++|++++ .| ++-..++.|..++.........+. .......+++.|..+.++++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 457889999854 44 455567899999998765444443 225788999998334445555566889999987644322
Q ss_pred ecc-cCCceEEEEEeeCCCEEEEEec---CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 387 WAD-VRDVISAICYIPDGKGFIVGSI---TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 387 ~~~-~~~~v~~v~~spdg~~l~~gs~---dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
... .......++++|++..|.++.. .+.|..+++....... +. .. .......+++++++..++++-...
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~-~~----~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA-QD----NLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE-CT----TCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE-EC----CCCCCcEEEEcCCCCEEEEEECCC
Confidence 222 2256789999997666665553 3678888876533211 11 11 124578999999865666666677
Q ss_pred CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccc
Q 005956 463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPS 519 (667)
Q Consensus 463 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~ 519 (667)
+.|.++|........... .......+++. +.+|+.+. ..+.|.++|..+++...
T Consensus 189 ~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE
Confidence 899999986432211111 23345667664 45555554 56899999998876543
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.79 E-value=1e-07 Score=99.40 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=146.2
Q ss_pred cccccEEEEEEcCCCCEEEEEEC-----CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 220 AHKGCIWTLKFSPDGRYLASGGE-----DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 220 ~H~~~I~~v~fspdg~~Latgs~-----Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+|-..+..|+|+++|+++++-.. ++.|.+||+.++......-
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~--------------------------------- 110 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY--------------------------------- 110 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEE---------------------------------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE---------------------------------
Confidence 56778999999999986666543 5789999988643211100
Q ss_pred ccccCCcceeeeccccceEEEEecCC-Ce-EEEEe---CCCcEEEEecCCCeEeEEeeC-CCcE-EEEEEeeCCCCEEEE
Q 005956 295 FQIEESPLQELHGHKGDVLDLAWSNS-NY-LLSCS---MDKTVRMWQVGCNQCLNVFDH-HNYV-TCVQFNPIDDNYFIS 367 (667)
Q Consensus 295 ~~~~~~~~~~l~gh~~~V~~l~~s~~-~~-l~s~s---~Dg~I~iWd~~~~~~~~~~~h-~~~V-~~l~f~p~d~~~l~s 367 (667)
+... . ..+...+..+++.++ +. +++-. .++.|.+||+.+++..+.+.. .... ....+.+ ++..+.+
T Consensus 111 --~~~~-~---~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~ 183 (343)
T 2qe8_A 111 --LPPP-I---TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI-DGVPVQI 183 (343)
T ss_dssp --CCTT-T---SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE-TTEECBE
T ss_pred --CChh-h---cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE-CCEEEEe
Confidence 0000 0 123345688999875 44 45555 678999999998887776642 1110 0134555 6777777
Q ss_pred EecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-----ee----eeEeeccccCc
Q 005956 368 GSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-----KL----EKVDFHDRKKT 438 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-----~~----~~~~~~~~~~~ 438 (667)
.+.++.++.|. ..+..++++|+|+.|+++...+. ++|.+..... .. ..+...+
T Consensus 184 ~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g---- 245 (343)
T 2qe8_A 184 GQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYS---- 245 (343)
T ss_dssp ECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEE----
T ss_pred ccCCCceecee-------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecc----
Confidence 77788776653 23678999999999988877663 4444432110 00 0001111
Q ss_pred CCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC-CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 439 SGNKITGIQFSRDESQRIMITSEDSKLRILDG-VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 439 ~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
+......+++.++| .++++...++.|.+||. ......+........+.+++|.++|.++++.+..+.+.+|+
T Consensus 246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 11345679999986 78888888899999998 32223333222356688999999998888877555544443
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.77 E-value=6.3e-07 Score=94.77 Aligned_cols=218 Identities=8% Similarity=0.017 Sum_probs=140.1
Q ss_pred CCC--eEEEEeCCCcEEEEecCCC----eEeEEee-------CC-CcEEEEEEeeCCCCEEEEEecC------CeEEEEe
Q 005956 319 NSN--YLLSCSMDKTVRMWQVGCN----QCLNVFD-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWG 378 (667)
Q Consensus 319 ~~~--~l~s~s~Dg~I~iWd~~~~----~~~~~~~-------h~-~~V~~l~f~p~d~~~l~sgs~D------g~v~iwd 378 (667)
+++ .++++..+.+|.|+|+.+. +..+++. .. .....+...| ++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 666 5667778899999999765 6666662 12 2566788889 77 77776665 7899999
Q ss_pred cCCCeEEEecccC----CceEEEEEeeCCCEEEEEe-------------------cCCcEEEEEecCCcceeeeEeeccc
Q 005956 379 VCEKRVVDWADVR----DVISAICYIPDGKGFIVGS-------------------ITGTCHFYKASGNDLKLEKVDFHDR 435 (667)
Q Consensus 379 l~~~~~~~~~~~~----~~v~~v~~spdg~~l~~gs-------------------~dg~i~l~d~~~~~~~~~~~~~~~~ 435 (667)
..+.+++...... ..-..+-|+|+++.+++.. ...+|.+||+.+.+... .+.+...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~-tI~vg~~ 249 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH-SLTLGEE 249 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE-EEESCTT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee-EEecCCC
Confidence 9999887533221 2244588899999888874 36799999998764332 3333110
Q ss_pred cCcCCCCeEEEEE--ccCCCeEEEEEe-----CCCcEEEEECCcc----eeeEEeCC----C------------CCCeEE
Q 005956 436 KKTSGNKITGIQF--SRDESQRIMITS-----EDSKLRILDGVDV----IHKFKGLP----K------------SGSQMS 488 (667)
Q Consensus 436 ~~~~~~~I~~l~~--sp~g~~~l~~~s-----~dg~I~iwd~~~~----~~~~~~~~----~------------~~~v~~ 488 (667)
......+.| +|++...++++- .+++|.+|..... .+.+.... . ......
T Consensus 250 ----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 250 ----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp ----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred ----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 122344555 999744444444 6678877543211 11111100 0 245678
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEEcCCCCcccc---cccc-----------C----ccceeEEccCCcEEEEec
Q 005956 489 ASFTTTGKHIISIGD-DCRVYVWNYDELCFPSS---KQKN-----------S----VRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 489 v~~spdg~~l~sgs~-Dg~I~iWd~~~~~~~~~---~~~~-----------~----~~~~~~fs~dg~~lav~w 543 (667)
+.+|+||++|+++.. .+.|.+||+.+...... .... . -...+.++|||+.|.++-
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999988865 57999999964422111 1111 0 135679999999988864
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=7.1e-07 Score=101.81 Aligned_cols=209 Identities=10% Similarity=0.056 Sum_probs=137.0
Q ss_pred CCcEEEEecCCCeEeEEeeCCCc---------------------------------EEEEEEeeCCCCEEEEEecCC---
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNY---------------------------------VTCVQFNPIDDNYFISGSIDG--- 372 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~---------------------------------V~~l~f~p~d~~~l~sgs~Dg--- 372 (667)
++.|+.+|..+++.+..+..... ...+++.| ++++++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 78999999999999887752111 12467888 778888887664
Q ss_pred ----------------eEEEEecCCCeEEEecc---c-------CCceEEEEEeeCC---CEEEEEecCCcEEEEEecCC
Q 005956 373 ----------------KVRIWGVCEKRVVDWAD---V-------RDVISAICYIPDG---KGFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 373 ----------------~v~iwdl~~~~~~~~~~---~-------~~~v~~v~~spdg---~~l~~gs~dg~i~l~d~~~~ 423 (667)
.|..+|..+++.+-... + ......+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 59999999998764321 1 1223334444578 67899999999999999988
Q ss_pred cceeeeEeecccc-----CcCCC------------------------CeEEEEEccCCCeEEEEEeC-------------
Q 005956 424 DLKLEKVDFHDRK-----KTSGN------------------------KITGIQFSRDESQRIMITSE------------- 461 (667)
Q Consensus 424 ~~~~~~~~~~~~~-----~~~~~------------------------~I~~l~~sp~g~~~l~~~s~------------- 461 (667)
+..... .+.... ..... .-..++|+|++ .++++...
T Consensus 348 ~~l~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~ 425 (677)
T 1kb0_A 348 KFISAK-NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWE 425 (677)
T ss_dssp CEEEEE-ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCC
T ss_pred CEeccc-cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeecccccc
Confidence 875431 111000 00000 01257888885 45555432
Q ss_pred ------------------------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005956 462 ------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWN 511 (667)
Q Consensus 462 ------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd 511 (667)
.+.|..||+.+.....+.. +...+....+..++..++.++.||.+++||
T Consensus 426 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 426 FNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp TTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 2779999988765555442 233344455667788999999999999999
Q ss_pred cCCCCcccccc--ccCccceeEEccCCcEEEE
Q 005956 512 YDELCFPSSKQ--KNSVRSCEHFFSEGVSVAV 541 (667)
Q Consensus 512 ~~~~~~~~~~~--~~~~~~~~~fs~dg~~lav 541 (667)
..+++...... .......+.|..+|+.+++
T Consensus 505 ~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99998865543 2233345677888874444
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.73 E-value=1.2e-06 Score=99.98 Aligned_cols=212 Identities=13% Similarity=0.083 Sum_probs=136.7
Q ss_pred CCCcEEEEecCCCeEeEEeeCC--C-----------------------------cE-EEEEEeeCCCCEEEEEecCCe--
Q 005956 328 MDKTVRMWQVGCNQCLNVFDHH--N-----------------------------YV-TCVQFNPIDDNYFISGSIDGK-- 373 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~~~~~~~h~--~-----------------------------~V-~~l~f~p~d~~~l~sgs~Dg~-- 373 (667)
.++.|..||..+++.+..+... . .+ ..+++.| +.++++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3789999999999998776421 0 01 2577888 7788888887764
Q ss_pred -----------------EEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---EEEEEecCCcEEEEEecCC
Q 005956 374 -----------------VRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGN 423 (667)
Q Consensus 374 -----------------v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~l~~gs~dg~i~l~d~~~~ 423 (667)
|..+|..+++.+-... +. ..+.......+|+ .+++++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 9999999998774222 11 1222233334665 7888999999999999988
Q ss_pred cceeeeEeeccc----------------------cCc-----------CCCCeEEEEEccCCCeEEEEEeC---------
Q 005956 424 DLKLEKVDFHDR----------------------KKT-----------SGNKITGIQFSRDESQRIMITSE--------- 461 (667)
Q Consensus 424 ~~~~~~~~~~~~----------------------~~~-----------~~~~I~~l~~sp~g~~~l~~~s~--------- 461 (667)
+..... .+... ... .......++|+|+. .++++...
T Consensus 340 ~~l~~~-~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~ 417 (689)
T 1yiq_A 340 ELLSAK-GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHI 417 (689)
T ss_dssp CEEEEE-ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECC
T ss_pred CEeccc-cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeec
Confidence 875321 00000 000 00112237888875 45554421
Q ss_pred ------------------------------------CCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 005956 462 ------------------------------------DSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDC 505 (667)
Q Consensus 462 ------------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg 505 (667)
+|.|+.||+.+.....+.. +........+...+.+|+.|+.||
T Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-YVTIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTS
T ss_pred cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-CCCCccCccceECCCEEEEECCCC
Confidence 3779999998766555543 222233335556788999999999
Q ss_pred cEEEEEcCCCCccccccc--cCccceeEEccCCc-EEEEec
Q 005956 506 RVYVWNYDELCFPSSKQK--NSVRSCEHFFSEGV-SVAVQW 543 (667)
Q Consensus 506 ~I~iWd~~~~~~~~~~~~--~~~~~~~~fs~dg~-~lav~w 543 (667)
.|+.||.++++....... ......+.|..||+ ++++..
T Consensus 497 ~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999998765432 23334467888887 555543
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=4.4e-07 Score=99.27 Aligned_cols=222 Identities=11% Similarity=0.063 Sum_probs=146.9
Q ss_pred CCC-eEE-EEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEE-e-eCCCCEEEEEe------------------cCCeE
Q 005956 319 NSN-YLL-SCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQF-N-PIDDNYFISGS------------------IDGKV 374 (667)
Q Consensus 319 ~~~-~l~-s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f-~-p~d~~~l~sgs------------------~Dg~v 374 (667)
+|| +|+ +...+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 366 444 44556679999999999988554 4567889998 4 7 888888884 34679
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC--------------------------------------cEE
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG--------------------------------------TCH 416 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg--------------------------------------~i~ 416 (667)
.++|..+.++.......+....++++|+|+++++.+.+. .+.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999998876555444567788999999999988553 244
Q ss_pred EEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----------eEEeCCCC
Q 005956 417 FYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------KFKGLPKS 483 (667)
Q Consensus 417 l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----------~~~~~~~~ 483 (667)
+.|..+ +......+.. .....++.++|||...++++..+.+|.++|..+... ......-.
T Consensus 258 VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred EEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 444443 1110111111 134567999999865666666788999999875421 11112235
Q ss_pred CCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCC----------CccccccccC------ccceeEEccCCcEEEEecCCC
Q 005956 484 GSQMSASFTTTGKHIIS-IGDDCRVYVWNYDEL----------CFPSSKQKNS------VRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 484 ~~v~~v~~spdg~~l~s-gs~Dg~I~iWd~~~~----------~~~~~~~~~~------~~~~~~fs~dg~~lav~w~~~ 546 (667)
.....++|+|+| ++++ .-.|+.|.+||++.. .......... ....+.++|||++|.++-...
T Consensus 331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 568899999999 5554 556899999999872 1111111111 112346789999999876655
Q ss_pred Ccc
Q 005956 547 GTE 549 (667)
Q Consensus 547 ~~~ 549 (667)
...
T Consensus 410 kdr 412 (595)
T 1fwx_A 410 KDR 412 (595)
T ss_dssp TTS
T ss_pred ccc
Confidence 433
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.67 E-value=4.8e-06 Score=87.50 Aligned_cols=185 Identities=7% Similarity=0.014 Sum_probs=121.1
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE------EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT------CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~------~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~ 393 (667)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.++.++.|..+|..+++..........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4578888899999999999999888876444332 2222 245778888899999999999887643322110
Q ss_pred --------eEEEEEee--CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 394 --------ISAICYIP--DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 394 --------v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+..+...| .+..+++++.+|.+..+|..+++.... ... .....+... + ..+++++.++
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~---~~~------~~~~~~~~~-~--~~l~~~~~~g 287 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK---REL------GSVNDFIVD-G--NRIYLVDQND 287 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE---ECC------CCEEEEEEE-T--TEEEEEETTC
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee---ccC------CCCCCceEE-C--CEEEEEcCCC
Confidence 00010111 356788888899999999988776432 111 223444443 2 4788888899
Q ss_pred cEEEEECCcceeeEEeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956 464 KLRILDGVDVIHKFKGLP-KSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 464 ~I~iwd~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
.|..+|..+......... ....+..... .+..|+.++.+|.|+++|..+++.....
T Consensus 288 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 288 RVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp CEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 999999876655554431 1222222233 2568889999999999999998865543
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=1.2e-08 Score=107.66 Aligned_cols=220 Identities=11% Similarity=0.020 Sum_probs=116.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccce
Q 005956 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312 (667)
Q Consensus 233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V 312 (667)
++..|++++.||.|..||..+++. +..+.. +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~---------------------------------------------~W~~~~--~~~ 40 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI---------------------------------------------KWTLKE--DPV 40 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE---------------------------------------------EEEEEC--CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE---------------------------------------------EEEecC--CCc
Confidence 567899999999999999987533 222222 223
Q ss_pred EEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCC--cEE-EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956 313 LDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHN--YVT-CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 313 ~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~--~V~-~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~ 388 (667)
.+..+..++ .+++++.|+.|+.||..+++.+..+.... .+. ...+. .+..+++++.++.|+.||..+++.+...
T Consensus 41 ~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 41 LQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp CCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC--------
T ss_pred eecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 333344556 77777899999999999998876664221 110 00111 3457788888999999999999876533
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC--CeEEEEEeCCCcEE
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE--SQRIMITSEDSKLR 466 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g--~~~l~~~s~dg~I~ 466 (667)
.... ...++|++..+++++.++.++.||..+++.... ..... .....+.++. ...+++++.+|.|+
T Consensus 119 ~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~--------~~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 119 SSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFD--------YAASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCE-EEEEE--------ECCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred cCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eeccc--------ccCccccCCccccceEEEECCCCEEE
Confidence 3322 234567888999999999999999998876443 11111 1112222321 13577889999999
Q ss_pred EEECCcceeeEEeCCCCCCeEE-EEEcCCCCEE----EEEeCCCcEEEEEcCCCC
Q 005956 467 ILDGVDVIHKFKGLPKSGSQMS-ASFTTTGKHI----ISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 467 iwd~~~~~~~~~~~~~~~~v~~-v~~spdg~~l----~sgs~Dg~I~iWd~~~~~ 516 (667)
.||..+.....+.. ...++.. ..++++|... +.+ ++.++.+|..+++
T Consensus 187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGE 238 (369)
T ss_dssp EECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCC
Confidence 99987655555443 2344433 4456666432 122 3456666665555
No 232
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=5.8e-06 Score=85.00 Aligned_cols=256 Identities=13% Similarity=0.064 Sum_probs=147.5
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
-.+++++++|++|+++..++.|..|+..+........... .. . . ..........
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~~---------------~-~--------~~~~g~~~~~ 74 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--YW---------------N-K--------AFCENSTDAE 74 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--TC---------------C-H--------HHHTTCCCGG
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--cc---------------c-c--------cccccccchh
Confidence 4568899999988888889999999876532211100000 00 0 0 0000000000
Q ss_pred eeccccceEEEEecC-CCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEec--------
Q 005956 305 LHGHKGDVLDLAWSN-SNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------- 370 (667)
Q Consensus 305 l~gh~~~V~~l~~s~-~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~-------- 370 (667)
.......+..+++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 75 ~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp GHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 001123578899997 6777777666668888887654322221 12356788888734555554322
Q ss_pred ---------CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCccee-eeEeeccccCcC
Q 005956 371 ---------DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL-EKVDFHDRKKTS 439 (667)
Q Consensus 371 ---------Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~-~~~~~~~~~~~~ 439 (667)
++.|..||..+++.......-.....++++|+|+.|+++ +..+.|..|++.+..... ..+. . .
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~--~--- 228 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K--I--- 228 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E--C---
T ss_pred ceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e--C---
Confidence 367889998877765443333456789999999977666 556899999987543211 1111 1 1
Q ss_pred CCCeEEEEEccCCCeEEEEEeC----------CCcEEEEECC-cceeeEEeCCC--CCCeEEEEEcCCCCEEEEEeCCCc
Q 005956 440 GNKITGIQFSRDESQRIMITSE----------DSKLRILDGV-DVIHKFKGLPK--SGSQMSASFTTTGKHIISIGDDCR 506 (667)
Q Consensus 440 ~~~I~~l~~sp~g~~~l~~~s~----------dg~I~iwd~~-~~~~~~~~~~~--~~~v~~v~~spdg~~l~sgs~Dg~ 506 (667)
.+ ...+++.++| .++++... .+.|..+|.. +....+..... ...+..+++ .++++.++....+.
T Consensus 229 ~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~ 305 (322)
T 2fp8_A 229 PN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS 305 (322)
T ss_dssp SS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE
T ss_pred CC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc
Confidence 13 6789999997 45555433 4678888865 33334433211 234566666 35655555556788
Q ss_pred EEEEEcCCC
Q 005956 507 VYVWNYDEL 515 (667)
Q Consensus 507 I~iWd~~~~ 515 (667)
|.++++...
T Consensus 306 i~~~~~~~~ 314 (322)
T 2fp8_A 306 VGILVYDKK 314 (322)
T ss_dssp EEEEEC---
T ss_pred eEEEecccc
Confidence 999987644
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.66 E-value=3.1e-07 Score=96.31 Aligned_cols=214 Identities=7% Similarity=-0.095 Sum_probs=130.6
Q ss_pred eEEEEeCCC----cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe----------cCCeEEEEecCCCeEEEe
Q 005956 322 YLLSCSMDK----TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----------IDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 322 ~l~s~s~Dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----------~Dg~v~iwdl~~~~~~~~ 387 (667)
.+++...++ +|.++|..+++.+..+.-...- .+.++| ++++++++. .++.|.+||+.+++++..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 344444444 8889999999999998733333 799999 888888876 368899999999998765
Q ss_pred cccC--------CceEEEEEeeCCCEEEEEec--CCcEEE--EEecCCcceeeeEeeccc------------cCcCCCCe
Q 005956 388 ADVR--------DVISAICYIPDGKGFIVGSI--TGTCHF--YKASGNDLKLEKVDFHDR------------KKTSGNKI 443 (667)
Q Consensus 388 ~~~~--------~~v~~v~~spdg~~l~~gs~--dg~i~l--~d~~~~~~~~~~~~~~~~------------~~~~~~~I 443 (667)
.... .....+.++|||++++++.. ...+.+ +|+.+ ...+...+. .....+.+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence 4322 34678999999999999875 356888 88865 111111000 00000000
Q ss_pred EEEE--------------------------EccCCCeEEEEEeCCCcEEEEECCcce----eeEEeCC-----CC---CC
Q 005956 444 TGIQ--------------------------FSRDESQRIMITSEDSKLRILDGVDVI----HKFKGLP-----KS---GS 485 (667)
Q Consensus 444 ~~l~--------------------------~sp~g~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~-----~~---~~ 485 (667)
..+. ..++++. ++..+. +.|.+.|..... ..+.... +. ..
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCccccccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 0010 1333323 333333 778888864321 1111000 00 01
Q ss_pred eEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCCccccccccCccceeEEccCCcEEEEec
Q 005956 486 QMSASFTTTGKHIISIGD---------DCRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQW 543 (667)
Q Consensus 486 v~~v~~spdg~~l~sgs~---------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~w 543 (667)
...++++||+++++.+.. ++.+.++|+.+.+.............+.|+|||+.+.++-
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence 111679999998887643 2356699999988765554444566689999998554443
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.65 E-value=4.9e-09 Score=110.72 Aligned_cols=201 Identities=8% Similarity=0.033 Sum_probs=110.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE-eccc-CCceE-E
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD-WADV-RDVIS-A 396 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~-~~~~-~~~v~-~ 396 (667)
++.+++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.|+.|+.||..+++.+. +..+ ...+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 45899999999999999999999988876 5555555555 67778888899999999998887543 2211 11111 1
Q ss_pred EEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcceee
Q 005956 397 ICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIHK 476 (667)
Q Consensus 397 v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~ 476 (667)
.++. ++..+++|+.++.++.||..+++.... +... . ...++|++ ..+++++.++.|+.||..+....
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~-------~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-LSSA-------F---ADSLSPST-SLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-ecCC-------C---cccccccC-CEEEEEecCCEEEEEECCCCCEE
Confidence 1111 345778888999999999998876432 1111 1 13445654 68888999999999997654322
Q ss_pred EEeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCCcccccccc-CccceeEEccCCc
Q 005956 477 FKGLPKSGSQMSASFTTTG---KHIISIGDDCRVYVWNYDELCFPSSKQKN-SVRSCEHFFSEGV 537 (667)
Q Consensus 477 ~~~~~~~~~v~~v~~spdg---~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~~~~~fs~dg~ 537 (667)
...... .....+++.+. ..+++++.||.|+.||..+++..+..... .+.....++++|.
T Consensus 154 W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 154 WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 221100 01122333332 56777889999999999999876654322 2223334555554
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.64 E-value=1.1e-05 Score=84.79 Aligned_cols=189 Identities=12% Similarity=0.021 Sum_probs=121.6
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEE-EEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCce----
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTC-VQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVI---- 394 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~-l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v---- 394 (667)
++.++.++.++.|..+|..+++.+..+.....+.+ ... .+..++.++.++.|..+|..+++.+........+
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 56888899999999999999998877764333221 122 2457888889999999999999876543332222
Q ss_pred --EEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcC-CCC---e-EEEEEccCCCeEEEEEeCCCcEEE
Q 005956 395 --SAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTS-GNK---I-TGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 395 --~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~-~~~---I-~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
..... .+..+++++.+|.+..+|..+++..... ......... ... + ...... + ..+++++.++.+..
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE-T--TEEEEECTTSCEEE
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE-C--CEEEEEecCcEEEE
Confidence 12222 2457888889999999999887765431 111000000 000 0 011111 2 37788888999999
Q ss_pred EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccc
Q 005956 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSK 521 (667)
Q Consensus 468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 521 (667)
+|..+........ ......+.. ++..|+.++.++.|+.+|..+++.....
T Consensus 254 ~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 254 LDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp EETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred EECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 9987665555542 233444444 4678888888999999999998865543
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=1e-05 Score=80.33 Aligned_cols=198 Identities=8% Similarity=0.003 Sum_probs=132.1
Q ss_pred ceEEEEecCCCeEE-EEeC--CCcEEEEecCCCeEeEEeeCCC--cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 311 DVLDLAWSNSNYLL-SCSM--DKTVRMWQVGCNQCLNVFDHHN--YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 311 ~V~~l~~s~~~~l~-s~s~--Dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
....+.|++++.|+ +.+. ++.|+++|+.+++.+..+.... ....+++. ++.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 46899999988444 4443 5799999999999998876333 33455554 3445555556789999999999887
Q ss_pred EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcE
Q 005956 386 DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKL 465 (667)
Q Consensus 386 ~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I 465 (667)
...... ......+++||+.++++..++.+.++|..+.+.... +..... ......++.+.|. +| ..++....++.|
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~-~~p~~~~nele~~-dg-~lyvn~~~~~~V 174 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYN-GHRVIRLNELEYI-NG-EVWANIWQTDCI 174 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTSSEE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCC-CcccccceeEEEE-CC-EEEEecCCCCeE
Confidence 644333 112244667888888887889999999988765443 222111 0111346788888 54 555555567899
Q ss_pred EEEECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCC
Q 005956 466 RILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHII-SIGDDCRVYVWNYDEL 515 (667)
Q Consensus 466 ~iwd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~-sgs~Dg~I~iWd~~~~ 515 (667)
.+.|..+. ...+... ........++|+|+++.++ ++...+.|++-++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99998753 3344321 0123568999999987655 4556788998888654
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=8.6e-06 Score=80.87 Aligned_cols=208 Identities=11% Similarity=0.024 Sum_probs=136.3
Q ss_pred ceeeccccc--cEEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 215 SQEIQAHKG--CIWTLKFSPDGRYLASGGE--DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 215 ~~~l~~H~~--~I~~v~fspdg~~Latgs~--Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+++ .|.. ....+.|+||+.+.++.+. ++.|++.|+.+++......
T Consensus 12 v~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----------------------------- 61 (266)
T 2iwa_A 12 LNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK----------------------------- 61 (266)
T ss_dssp EEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-----------------------------
T ss_pred EEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-----------------------------
Confidence 3444 3543 3579999999765555553 5799999999754422110
Q ss_pred CCCcccccCCcceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCC-CcEEEEEEeeCCCCEEEEEe
Q 005956 291 PDEVFQIEESPLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHH-NYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~d~~~l~sgs 369 (667)
+..+ .....+++..+...++.-.++.+.++|..+.+.+..+... ..- ..+.+ +++.++.+.
T Consensus 62 --------------l~~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~-Dg~~l~vs~ 123 (266)
T 2iwa_A 62 --------------MDDS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLAT-DGKILYGSD 123 (266)
T ss_dssp --------------CCTT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEE-CSSSEEEEC
T ss_pred --------------cCCC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEE-CCCEEEEEC
Confidence 1111 1122455553334455567899999999999999988654 322 33556 666666666
Q ss_pred cCCeEEEEecCCCeEEEecccC------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc-------c
Q 005956 370 IDGKVRIWGVCEKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------K 436 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~~~~~------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~-------~ 436 (667)
.++.|.++|..+.++....... ..++.+.|. +|..++....++.|.+.|..+++... .+.+.+. .
T Consensus 124 gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~-~I~~~g~~~~~~~~~ 201 (266)
T 2iwa_A 124 GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLG-WILLPNLRKKLIDEG 201 (266)
T ss_dssp SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE-EEECHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE-EEECCCccccccccc
Confidence 7899999999998766533221 236788887 77555444467899999999887643 3443221 1
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
.........|+|+|++..+++++...+.|.+.++..
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 112245689999999877777787888998888643
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.59 E-value=1.3e-06 Score=95.52 Aligned_cols=234 Identities=12% Similarity=0.072 Sum_probs=152.0
Q ss_pred CCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeecccc
Q 005956 232 PDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKG 310 (667)
Q Consensus 232 pdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~ 310 (667)
+||++|+.... +..|.+-|+.+.++..+. ++. ...
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-------------------------------------------~ip-~g~ 134 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-------------------------------------------EIP-NAK 134 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE-------------------------------------------ECS-SCC
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE-------------------------------------------eCC-CCC
Confidence 48888888765 456999999875432211 111 112
Q ss_pred ceEEEEe-c-CCC-eEEEEe------------------CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956 311 DVLDLAW-S-NSN-YLLSCS------------------MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 311 ~V~~l~~-s-~~~-~l~s~s------------------~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.+..+++ + |++ +++.++ .++.+.+.|.++.+.+..+.-......++++| +++++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEe
Confidence 3556666 3 666 666553 34689999999999888886444567788999 888888887
Q ss_pred cCC--------------------------------------eEEEEecCC--CeE-EEecccCCceEEEEEeeCCCEEEE
Q 005956 370 IDG--------------------------------------KVRIWGVCE--KRV-VDWADVRDVISAICYIPDGKGFIV 408 (667)
Q Consensus 370 ~Dg--------------------------------------~v~iwdl~~--~~~-~~~~~~~~~v~~v~~spdg~~l~~ 408 (667)
.+. .|.+.|..+ ++. +..........++.++|||+++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 553 366677776 433 334444456778999999998887
Q ss_pred Ee-cCCcEEEEEecCCcce------ee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc--------
Q 005956 409 GS-ITGTCHFYKASGNDLK------LE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-------- 472 (667)
Q Consensus 409 gs-~dg~i~l~d~~~~~~~------~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-------- 472 (667)
++ .+.+|.++|+.+.+.. .. .+.. ....+.....++|+|+| ...++.--|++|.+||+..
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~---~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVA---EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE---CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEE---EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc
Confidence 66 5789999999864310 00 0000 11123567889999998 7677778899999999654
Q ss_pred ----ceeeEEeCCCCCCe-----EEEEEcCCCCEEEEEeC---CCcE----------EEEEcCCCC
Q 005956 473 ----VIHKFKGLPKSGSQ-----MSASFTTTGKHIISIGD---DCRV----------YVWNYDELC 516 (667)
Q Consensus 473 ----~~~~~~~~~~~~~v-----~~v~~spdg~~l~sgs~---Dg~I----------~iWd~~~~~ 516 (667)
.+.++.. |..+- ..+.++|||++|+++.. |+.+ .++|+.+++
T Consensus 370 ~~~~vi~kidV--~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 370 KVDPIKDKLDV--HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCCCEEEEEEC--SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceeEEEeec--ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2222222 22211 12245899999999853 4431 788886554
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=2.3e-05 Score=77.00 Aligned_cols=194 Identities=9% Similarity=0.050 Sum_probs=126.1
Q ss_pred ceeeecccc--ceEEEEecCCC-eEEEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 302 LQELHGHKG--DVLDLAWSNSN-YLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 302 ~~~l~gh~~--~V~~l~~s~~~-~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
+.++ .|.. -...|.|+ ++ ++.+.+.+| .|+++|+.+++.+..+............+.++.+++..-.++.+.+
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 4444 4443 45889998 56 666777766 8999999999999988755544443333313444455556899999
Q ss_pred EecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 377 WGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 377 wdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
||..+.+++........- ..+.+|++.|++...++.|.++|..+.+.... .+...+. ....++.+.|. +| ..
T Consensus 112 ~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~---~~~~lNELe~~-~G-~l 184 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE---ELPELNELEWV-DG-EI 184 (262)
T ss_dssp EETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE---ECCCEEEEEEE-TT-EE
T ss_pred EECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc---cccccceeEEE-CC-EE
Confidence 999999887654443322 33447788888877778899999988776544 2221111 11345567776 54 55
Q ss_pred EEEEeCCCcEEEEECCcc--eeeEEeC----------CCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 456 IMITSEDSKLRILDGVDV--IHKFKGL----------PKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~--~~~~~~~----------~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
.+..-.++.|.+.|..+. ...+... ......+.++|+|+++.|+..+..
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 555556889999997643 3333321 112456899999998888877753
No 240
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.47 E-value=0.0002 Score=72.91 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=136.5
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
.....++|+++|+++++-..++.|..||..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~----------------------------------------------~ 65 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------------------Q 65 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------------------------E
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce----------------------------------------------E
Confidence 456789999999977777678888888765310 0
Q ss_pred eeeeccccceEEEEecCCCeEEEEe-C-CC-cEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCS-M-DK-TVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s-~-Dg-~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
..+ .....+..+++.+++.|+.+. . ++ .|..++..+++...... .......++..+ ++..+++-..++.|+.+
T Consensus 66 ~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~ 143 (306)
T 2p4o_A 66 IHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLI 143 (306)
T ss_dssp EEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEE
T ss_pred EEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEE
Confidence 001 112357889999998444333 2 22 46667777777654443 223344555554 44444444458899999
Q ss_pred ecCCCe--EEEec---------ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC-CcceeeeEeeccccCcCCCCeE
Q 005956 378 GVCEKR--VVDWA---------DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG-NDLKLEKVDFHDRKKTSGNKIT 444 (667)
Q Consensus 378 dl~~~~--~~~~~---------~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~-~~~~~~~~~~~~~~~~~~~~I~ 444 (667)
|..+++ +.... ..-...+.+ +|+++.|+++. ..+.|..|++.. +.......... .....
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~ 215 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------QTNID 215 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------SCCCS
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------cCCCC
Confidence 987653 32110 111234555 88887766654 567899999875 22211111111 13456
Q ss_pred EEEEccCCCeEEEEEeCCCcEEEEECCcceeeE-EeCCCCCCeEEEEEc---CCCCEEEEEeCCC
Q 005956 445 GIQFSRDESQRIMITSEDSKLRILDGVDVIHKF-KGLPKSGSQMSASFT---TTGKHIISIGDDC 505 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~~s---pdg~~l~sgs~Dg 505 (667)
.+++.++| +++++....+.|.++|........ ..........+++|. |+++.|+.++..+
T Consensus 216 gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 216 DFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp SEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 78999997 666666677899999965322222 122133568999998 8888887776543
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=7.8e-05 Score=75.94 Aligned_cols=228 Identities=11% Similarity=-0.040 Sum_probs=138.2
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC--CeEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--GKVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--g~v~iwdl~~~~~~~ 386 (667)
.....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++.... ..|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988 5555557889999998753 444455556789999999 88866655432 247777878877654
Q ss_pred eccc--CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecc---ccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 387 WADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHD---RKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 387 ~~~~--~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~---~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
+... ......++..+++..+++-..+|.|.++|..+............ ...........+ ++++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3322 22345555555554444444588888888765322111000000 000111234555 7876556666667
Q ss_pred CCcEEEEECCc-c----eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccc--ccccc-CccceeEEc
Q 005956 462 DSKLRILDGVD-V----IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPS--SKQKN-SVRSCEHFF 533 (667)
Q Consensus 462 dg~I~iwd~~~-~----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~-~~~~~~~fs 533 (667)
.+.|.++|... . ...+.. ......++++++|+++++....+.|.+++.. ++... ..... ....+++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence 78999999652 1 112211 1345678999999887777777899999976 43321 11211 334567888
Q ss_pred ---cCCcEEEEecCC
Q 005956 534 ---SEGVSVAVQWPG 545 (667)
Q Consensus 534 ---~dg~~lav~w~~ 545 (667)
+|+..|.++...
T Consensus 264 g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNG 278 (306)
T ss_dssp CSTTTTTEEEEEECT
T ss_pred cccCCCCEEEEECCC
Confidence 887777776543
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.43 E-value=3.8e-06 Score=86.08 Aligned_cols=202 Identities=16% Similarity=0.056 Sum_probs=125.6
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE-EecccCCceEEE
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWADVRDVISAI 397 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~~~~~~v~~v 397 (667)
++.|..++.++.|..+|.. ++....+. ....+.++...+ ++. ++.++.++.|..+|.. ++.. ........+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6688888889999999998 77666654 333455566655 444 6667888999999998 6554 333334556777
Q ss_pred EEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc-ceee
Q 005956 398 CYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD-VIHK 476 (667)
Q Consensus 398 ~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~-~~~~ 476 (667)
.+.++|. +.+++ +.+..|| .++..... ... ....+.++...++| .|.+++.++.|..+|... ....
T Consensus 183 ~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~-~~~------~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 183 SIGKDGT-IYFGS--DKVYAIN-PDGTEKWN-FYA------GYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEKWR 249 (330)
T ss_dssp EECTTCC-EEEES--SSEEEEC-TTSCEEEE-ECC------SSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEEEE
T ss_pred EEcCCCE-EEEEe--CEEEEEC-CCCcEEEE-Ecc------CCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEeEE
Confidence 7777776 44555 8889998 44443221 111 12457778888875 577777788888888542 2222
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-ccCccceeEEccCCcEEEEe
Q 005956 477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-KNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~fs~dg~~lav~ 542 (667)
+.. ....+..+.+.+++ .|..++.+|.|+.+|. +++...... .......+...++|.+.+..
T Consensus 250 ~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 250 FKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT 312 (330)
T ss_dssp EEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred eeC--CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence 222 23333445555555 5667777888999996 444333222 22333444555667655543
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=1e-05 Score=92.10 Aligned_cols=220 Identities=10% Similarity=-0.016 Sum_probs=135.8
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCC------CcEEEEEEeeCCCCEEEEEec------CCeEEEEecCCCeEEEe
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~d~~~l~sgs~------Dg~v~iwdl~~~~~~~~ 387 (667)
++.|+.++.|+.|..+|..+++.+..+... ..+...-.. .+..++.++. ++.|+.||..+++.+-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 458888899999999999999998888633 122211111 2345555543 69999999999987632
Q ss_pred cccC---------------------------------CceEEEEEeeCCCEEEEEecCC-------------------cE
Q 005956 388 ADVR---------------------------------DVISAICYIPDGKGFIVGSITG-------------------TC 415 (667)
Q Consensus 388 ~~~~---------------------------------~~v~~v~~spdg~~l~~gs~dg-------------------~i 415 (667)
.... .....++++|++..+++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 2110 0113578899999999887764 48
Q ss_pred EEEEecCCcceeeeEeecccc---CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcceeeEEeCCC--------
Q 005956 416 HFYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVIHKFKGLPK-------- 482 (667)
Q Consensus 416 ~l~d~~~~~~~~~~~~~~~~~---~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-------- 482 (667)
..+|..+++.... +....+. ........-+....+|. ..++.++.+|.|+++|..+..........
T Consensus 286 ~AlD~~TG~~~W~-~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 286 VALDPDTGKYKWH-YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEECTTTCCEEEE-EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEECCCCCEEEE-EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 8999988876543 1111110 00011222233334542 57889999999999997654333221100
Q ss_pred ---CCCe------------------------EEEEEcCCCCEEEEEeCC-------------------------------
Q 005956 483 ---SGSQ------------------------MSASFTTTGKHIISIGDD------------------------------- 504 (667)
Q Consensus 483 ---~~~v------------------------~~v~~spdg~~l~sgs~D------------------------------- 504 (667)
...+ ..++|+|++.++++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 0001 157889998888876432
Q ss_pred ------------CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956 505 ------------CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 505 ------------g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~ 542 (667)
|.|+.||+.+++..+............+..++..+.++
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g 494 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG 494 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE
Confidence 78999999999876665433322223455566655554
No 244
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00018 Score=70.94 Aligned_cols=207 Identities=12% Similarity=0.208 Sum_probs=138.2
Q ss_pred eeeccccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeC--CCcEEEEEEeeCCCCEEEEEecCCeEEEEec
Q 005956 304 ELHGHKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGV 379 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl 379 (667)
.+.+-...+..|+|.|++ +++....++.|...|.. ++.++.+.. ......|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 344555689999999876 44457778899999998 888887753 35788889987 7777676656788999987
Q ss_pred CCCeE---EEec-------ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc--eeeeEeecc-ccCcCCCCeEEE
Q 005956 380 CEKRV---VDWA-------DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL--KLEKVDFHD-RKKTSGNKITGI 446 (667)
Q Consensus 380 ~~~~~---~~~~-------~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~--~~~~~~~~~-~~~~~~~~I~~l 446 (667)
..... +... ..+.....++|+|.++.|+++.......+|.+..... ......... ........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65431 1111 2234468999999998888888877777777762100 011110000 001123457899
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeCCC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDV-IHKFKGLPK-------SGSQMSASFTTTGKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~ 513 (667)
++.|..+.+++.+.....|.++|.... +..+..... -...-.|+|.++|+ |+..++.+.++++.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 999987677888888889999997643 333333211 13668999999997 5555788877777543
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.41 E-value=0.0004 Score=80.69 Aligned_cols=266 Identities=10% Similarity=0.105 Sum_probs=167.4
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
|.++...++|.+.+ |+.++-|..|+..+...... .
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~-------------------------------------------~- 209 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKV-------------------------------------------I- 209 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEEC-------------------------------------------C-
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEe-------------------------------------------c-
Confidence 88888888886555 56654588888764221100 0
Q ss_pred eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
...+...|.++...+++.|..++.++-|.+||..+++...... ....|.++...+ ++.+. .|+.+ -|.+
T Consensus 210 ~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~ 286 (795)
T 4a2l_A 210 PILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNI 286 (795)
T ss_dssp ----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEE
T ss_pred CCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhhe
Confidence 0012356888888778867777766569999998876554332 135799998887 66544 45555 5889
Q ss_pred EecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEE
Q 005956 377 WGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 377 wdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~ 448 (667)
||..+++...... ....|.++...++|. |.+|+.++-|..|+........... ...........|.++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRN-IPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECC-CTTSSSCSCSSEEEEEE
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcC-CCCCCCCCCCeeEEEEE
Confidence 9998887665432 235699999988875 6678888888889876554322110 00001113457999998
Q ss_pred ccCCCeEEEEEeCCCcEEEEECCcc-eeeEEeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 449 SRDESQRIMITSEDSKLRILDGVDV-IHKFKGL-------PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 449 sp~g~~~l~~~s~dg~I~iwd~~~~-~~~~~~~-------~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
.++| .|.+|+.++-|..||.... ...+... -....|.++...++|+.|..|+.++-|++||..++.....
T Consensus 365 d~~g--~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 365 DKDK--NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp CTTS--CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCC--CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 8876 5667888878999997642 2233211 1245788999988988566677777799999887654322
Q ss_pred cc-----ccCccceeEEccCCcEEEEe
Q 005956 521 KQ-----KNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 521 ~~-----~~~~~~~~~fs~dg~~lav~ 542 (667)
.. ....+.++...++|.+.+..
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 11 11223344555566654443
No 246
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=2e-05 Score=89.54 Aligned_cols=233 Identities=8% Similarity=0.049 Sum_probs=129.3
Q ss_pred eEEEEecCCC-eEEEEeC-CCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEe-cC-----CeEEEEecCC
Q 005956 312 VLDLAWSNSN-YLLSCSM-DKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS-ID-----GKVRIWGVCE 381 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs-~D-----g~v~iwdl~~ 381 (667)
..++++..++ .++.|+. +..+.+||..+++-...-. ....-.+++..+ ++++++.|+ .+ ..+.+||..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence 4456777777 6777774 5689999998876544322 122223455566 788999988 34 5699999988
Q ss_pred CeEEEecc-----cCCceEEEEEeeCCCEEEEEecCC---------cEEEEEecCCcceeeeEeecccc---CcCCCCeE
Q 005956 382 KRVVDWAD-----VRDVISAICYIPDGKGFIVGSITG---------TCHFYKASGNDLKLEKVDFHDRK---KTSGNKIT 444 (667)
Q Consensus 382 ~~~~~~~~-----~~~~v~~v~~spdg~~l~~gs~dg---------~i~l~d~~~~~~~~~~~~~~~~~---~~~~~~I~ 444 (667)
.+-..... ....-....+..+++.++.|+.+| .+..||..+...... ....... ......-.
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTCE
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCCc
Confidence 77554311 000000011224556666666554 467888876653321 1111000 00011234
Q ss_pred EEEEccCCCeEEEEEeCCC-----------cEEEEECCcceeeEEe--CCCCCC-eEEEEEcCCCCEEEEEeCC------
Q 005956 445 GIQFSRDESQRIMITSEDS-----------KLRILDGVDVIHKFKG--LPKSGS-QMSASFTTTGKHIISIGDD------ 504 (667)
Q Consensus 445 ~l~~sp~g~~~l~~~s~dg-----------~I~iwd~~~~~~~~~~--~~~~~~-v~~v~~spdg~~l~sgs~D------ 504 (667)
++.|...+.+++++|+.++ .|.+||.....-.... ...... -.+++..|+|+.++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 4555443347788877532 5778886543222111 112222 2345667899999999864
Q ss_pred -----CcEEEEEcCCCCccccc---cccCccceeEEccCCcEEEEecCCC
Q 005956 505 -----CRVYVWNYDELCFPSSK---QKNSVRSCEHFFSEGVSVAVQWPGI 546 (667)
Q Consensus 505 -----g~I~iWd~~~~~~~~~~---~~~~~~~~~~fs~dg~~lav~w~~~ 546 (667)
..+.+||..+.+-.... ....--++..+.+||+++++.....
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence 46899998775422211 1112223455678999999977543
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=4.7e-05 Score=74.82 Aligned_cols=184 Identities=11% Similarity=0.008 Sum_probs=121.7
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCccee
Q 005956 225 IWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQE 304 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (667)
...+.|+ ++.+..+.+.+|.|+++|+.+++.. ..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------------------------~~ 90 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------------------------------------------WM 90 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------------------------------------------EE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------------------------------------------eE
Confidence 4688888 4677888888999999999875432 11
Q ss_pred eeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 305 LHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
+.....--..+++..+..++..-.++.+.+||..+.+.+..+.....-+.+++ +++.|+.+..++.|.++|..+.++
T Consensus 91 ~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 91 ERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp EECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE---ETTEEEEECSSSEEEEECTTTCCE
T ss_pred ECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec---CCCEEEEECCCCEEEEEcCCCCeE
Confidence 10111111235554444555566789999999999999999985554455554 567777777789999999999887
Q ss_pred EEeccc---C---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccc-------cCcCCCCeEEEEEccC
Q 005956 385 VDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDR-------KKTSGNKITGIQFSRD 451 (667)
Q Consensus 385 ~~~~~~---~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~-------~~~~~~~I~~l~~sp~ 451 (667)
+..... . ..++.+.|. +|+.++..-.+..|.+.|..+++... .+.+.+- ......-.++|++.|+
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~-~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG-VIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE-EEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE-EEECCCCcccccccccCcCCceEEEEEcCC
Confidence 653322 1 245667776 77555444467899999998887643 3443321 1112346789999998
Q ss_pred CCeEEEEE
Q 005956 452 ESQRIMIT 459 (667)
Q Consensus 452 g~~~l~~~ 459 (667)
+..++++|
T Consensus 246 ~~rlfVTG 253 (268)
T 3nok_A 246 SGRIFMTG 253 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEeC
Confidence 75555554
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.38 E-value=1.2e-05 Score=82.41 Aligned_cols=186 Identities=14% Similarity=0.039 Sum_probs=118.2
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE-Eec
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV-DWA 388 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~-~~~ 388 (667)
.+.++...+++.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.++ .++ +.|..+| .+++.. ...
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~ 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFY 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEEC
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEc
Confidence 3455566667778888888999999999 77776665 344566667765 56544 444 7899999 565544 344
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
.....+.++...++| .+.+++.++.+..+|... ... ...... ...+..+.+.+++ .|.+++.++.|..+
T Consensus 212 ~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g-~~~-~~~~~~------~~~~~~~~~~~~g--~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 212 AGYWTVTRPAISEDG-TIYVTSLDGHLYAINPDG-TEK-WRFKTG------KRIESSPVIGNTD--TIYFGSYDGHLYAI 280 (330)
T ss_dssp CSSCCCSCCEECTTS-CEEEEETTTEEEEECTTS-CEE-EEEECS------SCCCSCCEECTTS--CEEEECTTCEEEEE
T ss_pred cCCcceeceEECCCC-eEEEEcCCCeEEEECCCC-CEe-EEeeCC------CCccccceEcCCC--eEEEecCCCCEEEE
Confidence 444567888888777 566677788888887433 222 222211 1223345555554 67788888899999
Q ss_pred ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
|.. .............+.++...++|. |..++.+|.+++...+..
T Consensus 281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 963 222222222345566777777776 556788999998876544
No 249
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.35 E-value=3.4e-05 Score=88.06 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=95.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCC------CcEEEEEEeeCCCCEEEEEe------cCCeEEEEecCCCeEEEe
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH------NYVTCVQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~d~~~l~sgs------~Dg~v~iwdl~~~~~~~~ 387 (667)
++.++.++.|+.|..+|..+|+.+..+... ..+.+.-.-. ++ .++.++ .++.|+.||..+++.+-.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 458888999999999999999998877532 1121111111 34 444443 368999999999987632
Q ss_pred ccc--------------------------------CCceEEEEEeeCCCEEEEEecCCc-------------------EE
Q 005956 388 ADV--------------------------------RDVISAICYIPDGKGFIVGSITGT-------------------CH 416 (667)
Q Consensus 388 ~~~--------------------------------~~~v~~v~~spdg~~l~~gs~dg~-------------------i~ 416 (667)
... ......++++|++..+++++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 210 001135788998899999988764 99
Q ss_pred EEEecCCcceeeeEeecccc---CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcce
Q 005956 417 FYKASGNDLKLEKVDFHDRK---KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI 474 (667)
Q Consensus 417 l~d~~~~~~~~~~~~~~~~~---~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~ 474 (667)
.+|..+++..... ....+. .....++.......+|. ..++.++.+|.++++|..+..
T Consensus 279 AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 279 AVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 9999988876432 111110 00112222222223431 378889999999999976543
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00027 Score=72.41 Aligned_cols=192 Identities=11% Similarity=0.025 Sum_probs=123.6
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee-C-------------------CCcEEEEEEeeCCCCEEEEE
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD-H-------------------HNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-------------------~~~V~~l~f~p~d~~~l~sg 368 (667)
....+++|.+++ .++++..++.|..|+..+++...... . ...+.++++.+ ++..|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 456778899988 58888899999999988765432211 0 12578899986 34556666
Q ss_pred ecCCeEEEEecCCCeEEEecc-----cCCceEEEEEee-CCCEEEEEec-----------------CCcEEEEEecCCcc
Q 005956 369 SIDGKVRIWGVCEKRVVDWAD-----VRDVISAICYIP-DGKGFIVGSI-----------------TGTCHFYKASGNDL 425 (667)
Q Consensus 369 s~Dg~v~iwdl~~~~~~~~~~-----~~~~v~~v~~sp-dg~~l~~gs~-----------------dg~i~l~d~~~~~~ 425 (667)
...+.|..+|..++.+..+.. ....+..+++.+ +|+.+++-.. +|.+..||..+...
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556668899987765433221 123478899999 9976665432 36677888765543
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc----ceeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD----VIHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
....-.+ .....++++|+|..++++-...+.|.+|++.. ....+.. ..+ ...++++++|++.++.
T Consensus 178 ~~~~~~~--------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TLLLKEL--------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EEEEEEE--------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred EEeccCC--------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence 2211111 23467999999743445556678999999763 1222222 123 7889999999877766
Q ss_pred eC----------CCcEEEEEcC
Q 005956 502 GD----------DCRVYVWNYD 513 (667)
Q Consensus 502 s~----------Dg~I~iWd~~ 513 (667)
.. .+.|..+|.+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT
T ss_pred cCcccccccCCCccEEEEECCC
Confidence 44 4567777764
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.33 E-value=6.6e-05 Score=73.73 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=123.8
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEE--EEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVT--CVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~--~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~ 387 (667)
.-...|.|+.+.++.+.+.+|.|+++|+.+++.+..+ ...... .+++. .+.+++..-.++.+.+||..+.+++..
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3457888885337778888899999999999988877 444443 35553 355666666789999999999998865
Q ss_pred cccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEE
Q 005956 388 ADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRI 467 (667)
Q Consensus 388 ~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~i 467 (667)
......-..++ +|++.|+++..++.|.++|..+.+.... +..... ...-..++.+.|. +| ..++..-.++.|.+
T Consensus 132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~-g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v 205 (268)
T 3nok_A 132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLR-GQPVELINELECA-NG-VIYANIWHSSDVLE 205 (268)
T ss_dssp EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCC-CcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence 44433333444 6788888888889999999988776543 222211 1112345777877 54 55555546789999
Q ss_pred EECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 005956 468 LDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 468 wd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
.|..+. ...+... ......+.++++|+++.|+..+.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 997643 3333321 12346789999998766665553
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00019 Score=69.77 Aligned_cols=195 Identities=7% Similarity=-0.009 Sum_probs=126.5
Q ss_pred ceeeeccc--cceEEEEecCCCeEEEEeCCC--cEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 302 LQELHGHK--GDVLDLAWSNSNYLLSCSMDK--TVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 302 ~~~l~gh~--~~V~~l~~s~~~~l~s~s~Dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+.++ .|. .-...|.|+++.++.+.+.+| .|+.+|+.+++.+..+............+.++.++...-.++.+.+|
T Consensus 12 ~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 3444 454 457789998733666666654 89999999999999887554443333333245555556678999999
Q ss_pred ecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 378 GVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 378 dl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
|..+.+++........-..+ .++++.|+++..++.|.++|..+.+.... +..... ...-..++.+.+. +| ..++
T Consensus 91 D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~-I~V~~~-g~~~~~lNeLe~~-~G-~lya 164 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGS-IKVTAG-GRPLDNLNELEWV-NG-ELLA 164 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEE-EECEET-TEECCCEEEEEEE-TT-EEEE
T ss_pred ECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEE-EEEccC-CcccccceeeEEe-CC-EEEE
Confidence 99999988655444433344 46788888877789999999988776543 222211 0111345667766 43 5554
Q ss_pred EEeCCCcEEEEECCcc--eeeEEeC-----------CCCCCeEEEEEcCCCCEEEEEeC
Q 005956 458 ITSEDSKLRILDGVDV--IHKFKGL-----------PKSGSQMSASFTTTGKHIISIGD 503 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~~--~~~~~~~-----------~~~~~v~~v~~spdg~~l~sgs~ 503 (667)
..-.+..|.+.|..+. ...+... ......+.++++|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4546779999997743 3333321 12245689999998877777664
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.31 E-value=0.00062 Score=67.51 Aligned_cols=218 Identities=7% Similarity=-0.074 Sum_probs=131.1
Q ss_pred ccEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 223 GCIWTLKFSPDGRYLASG-GEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latg-s~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
..+..++|++++..|+.+ ..++.|.+++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--------------------------------------------- 70 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--------------------------------------------- 70 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------------------------------------
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---------------------------------------------
Confidence 357899999976655544 4567899988764211
Q ss_pred ceeeeccccceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEec---CCeEE
Q 005956 302 LQELHGHKGDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSI---DGKVR 375 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~---Dg~v~ 375 (667)
...+.........+++.+++ . +++-...+.|.++++.......... .......++++| ++..|+.+.. .+.|.
T Consensus 71 ~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEE
T ss_pred EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEE
Confidence 01111112356889999864 4 4455567899999987543333332 225678999999 6555555543 36888
Q ss_pred EEecCCCeEEEec-ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCC
Q 005956 376 IWGVCEKRVVDWA-DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDES 453 (667)
Q Consensus 376 iwdl~~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~ 453 (667)
.+++.......+. ..-.....++++|++..|.++. ..+.|..+|..+..... .+ .. ......++.. +.
T Consensus 150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~--~~-----~~~P~gi~~d--~~ 219 (267)
T 1npe_A 150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VL--EG-----LQYPFAVTSY--GK 219 (267)
T ss_dssp EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EE--EC-----CCSEEEEEEE--TT
T ss_pred EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-Ee--cC-----CCCceEEEEe--CC
Confidence 8888754332221 2234688999999877666554 55789999987533211 11 11 1334566654 33
Q ss_pred eEEEEEeCCCcEEEEECCcceeeEEeCCC-CCCeEEEEEcCCCC
Q 005956 454 QRIMITSEDSKLRILDGVDVIHKFKGLPK-SGSQMSASFTTTGK 496 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~spdg~ 496 (667)
.++++....+.|.++|............. ......+++.|++.
T Consensus 220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 55555556789999998644332222212 22356777777764
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.29 E-value=0.0001 Score=72.46 Aligned_cols=194 Identities=13% Similarity=0.119 Sum_probs=122.5
Q ss_pred ceeecccccc--EEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeec
Q 005956 215 SQEIQAHKGC--IWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVI 290 (667)
Q Consensus 215 ~~~l~~H~~~--I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (667)
.+++ .|... ...+.|+ ++.+..+++.+| .|+++|+.+++....
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~------------------------------- 80 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ------------------------------- 80 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-------------------------------
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-------------------------------
Confidence 3444 34433 4789998 777778888776 899999987544321
Q ss_pred CCCcccccCCcceeeecccc-ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe
Q 005956 291 PDEVFQIEESPLQELHGHKG-DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 291 ~~~~~~~~~~~~~~l~gh~~-~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs 369 (667)
+.-... --..++...+...+..-.++.+.+||..+.+.+..+.....-+.++ + +++.|+...
T Consensus 81 --------------~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L~~Sd 143 (262)
T 3nol_A 81 --------------IELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYLIMSD 143 (262)
T ss_dssp --------------EECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCEEECC
T ss_pred --------------EecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEEEEEC
Confidence 111111 1122343333244445568899999999999999998554334444 4 566666666
Q ss_pred cCCeEEEEecCCCeEEEeccc---C---CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc------C
Q 005956 370 IDGKVRIWGVCEKRVVDWADV---R---DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K 437 (667)
Q Consensus 370 ~Dg~v~iwdl~~~~~~~~~~~---~---~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~------~ 437 (667)
.++.|.++|..+.+++..... . ..++.+.|. +|+.++..-.++.|.+.|..+++... .+.+.+-. .
T Consensus 144 Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~-~Id~~~L~~~~~~~~ 221 (262)
T 3nol_A 144 GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG-IIDLNGILAEAGPLP 221 (262)
T ss_dssp SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE-EEECTTGGGGSCSCC
T ss_pred CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE-EEECCcCcccccccc
Confidence 678899999999887653222 1 335567775 77655444468899999998887643 34443211 1
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeC
Q 005956 438 TSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 438 ~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
....-.+.|+|+|++. .|++++.
T Consensus 222 ~~~~vlNGIA~dp~~~-~lfVTGK 244 (262)
T 3nol_A 222 SPIDVLNGIAWDKEHH-RLFVTGK 244 (262)
T ss_dssp SSCCCEEEEEEETTTT-EEEEEET
T ss_pred CcCCceEEEEEcCCCC-EEEEECC
Confidence 1234678999999864 4555543
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.28 E-value=0.00098 Score=77.37 Aligned_cols=226 Identities=12% Similarity=0.142 Sum_probs=144.4
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee--------CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD--------HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE 381 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~ 381 (667)
..|.++...++|.|..|+.+ -|.+||..++....... ....|.++...+ ++. |..|+.++-|..|+..+
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCc
Confidence 56899998888877777766 58999998877654432 235799998887 555 55677777799998876
Q ss_pred CeEEEecc-------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-CcCCCCeEEEEEccCCC
Q 005956 382 KRVVDWAD-------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-KTSGNKITGIQFSRDES 453 (667)
Q Consensus 382 ~~~~~~~~-------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-~~~~~~I~~l~~sp~g~ 453 (667)
+....... ....|.+++..++|+ |.+|+.++-+..|+..+.............. ......|.++...++|
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g- 417 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK- 417 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-
T ss_pred ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-
Confidence 65443221 235689999888775 6668888789999887655432111000000 1123678999988875
Q ss_pred eEEEEEeCCCcEEEEECCcc-eeeEEeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccc------
Q 005956 454 QRIMITSEDSKLRILDGVDV-IHKFKGL---PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQK------ 523 (667)
Q Consensus 454 ~~l~~~s~dg~I~iwd~~~~-~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~------ 523 (667)
..|.+|+.++-|.+||.... ...+... .....|.++...++|.+.+... +-|++|+..++........
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEcccccccccc
Confidence 43777888778999997643 2222210 1345788999988888666554 4589999887654322111
Q ss_pred -cCccceeEEccCCcEEEEe
Q 005956 524 -NSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 524 -~~~~~~~~fs~dg~~lav~ 542 (667)
...+.++...++|.+.+..
T Consensus 496 ~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEe
Confidence 1223445666677655443
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.00097 Score=69.26 Aligned_cols=199 Identities=6% Similarity=-0.069 Sum_probs=125.7
Q ss_pred cceEEEEecCCC-eE-EEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNSN-YL-LSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l-~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~ 386 (667)
..+..++|.+.+ .| ++-...+.|..+++........+. .......+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347889998654 44 455567889999998765444443 234567888987455666666667889999988754333
Q ss_pred ec-ccCCceEEEEEeeCCCEEEEEe-cC-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 387 WA-DVRDVISAICYIPDGKGFIVGS-IT-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 387 ~~-~~~~~v~~v~~spdg~~l~~gs-~d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
.. ..-.....++++|.+..|.... .. +.|..+++........ + . ........++++|+++.++++-...+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~--~----~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-A--D----THLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-C--C----SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-E--E----CCCCCcceEEEeCCCCEEEEEECCCC
Confidence 22 3335678999999666555544 34 6788888765433211 0 0 11245789999987656666666778
Q ss_pred cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.|..+|.... ...+.. ........+++. .+...++-...+.|..++..++..
T Consensus 226 ~I~~~~~dG~~~~~~~~-~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 226 VIERANLDGSHRKAVIS-QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEEEETTSCSCEEEEC-SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEEeCCCCceEEEEe-CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCc
Confidence 8999997632 222221 234566778883 444444545567888888555543
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.24 E-value=0.00011 Score=81.93 Aligned_cols=222 Identities=10% Similarity=-0.016 Sum_probs=130.7
Q ss_pred CCeEEEEeC------CCcEEEEecCCCeEeEEeeCCCcE---------------------------------------EE
Q 005956 320 SNYLLSCSM------DKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 354 (667)
Q Consensus 320 ~~~l~s~s~------Dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 354 (667)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455555554 789999999999998877532211 13
Q ss_pred EEEeeCCCCEEEEEecC----------------CeEEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---E
Q 005956 355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---G 405 (667)
Q Consensus 355 l~f~p~d~~~l~sgs~D----------------g~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~ 405 (667)
+++.+ ....++.+..+ +.|..+|..+++.+-... +. ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 55666 55566666532 369999999998764222 11 1112223335774 5
Q ss_pred EEEEecCCcEEEEEecCCcceeeeEeecccc------C-cCCCCe--------------------------EEEEEccCC
Q 005956 406 FIVGSITGTCHFYKASGNDLKLEKVDFHDRK------K-TSGNKI--------------------------TGIQFSRDE 452 (667)
Q Consensus 406 l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~------~-~~~~~I--------------------------~~l~~sp~g 452 (667)
+++++.+|.+.++|..+++.... ..+.... . ....++ ..++++|+.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~-~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVA-EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE-EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEeCCCcEEEEEECCCCCEEee-ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 77888999999999988876543 1111100 0 000111 246777775
Q ss_pred CeEEEEEe-------------------------------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC
Q 005956 453 SQRIMITS-------------------------------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG 495 (667)
Q Consensus 453 ~~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg 495 (667)
.++++.. .++.|..||..+.....+.. ....+....+...+
T Consensus 398 -g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~~~~t~g 475 (571)
T 2ad6_A 398 -RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKG 475 (571)
T ss_dssp -TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETT
T ss_pred -CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccceeEEECC
Confidence 3444432 35789999987654444332 11222222223346
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccccccccC--ccceeEEccCCcEEEEecCC
Q 005956 496 KHIISIGDDCRVYVWNYDELCFPSSKQKNS--VRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 496 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~--~~~~~~fs~dg~~lav~w~~ 545 (667)
..|+.++.||.|+.||..+++......... ....+.|..+|+.++....+
T Consensus 476 g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G 527 (571)
T 2ad6_A 476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECC
Confidence 678889999999999999998866543322 22334566788755554433
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.23 E-value=4.7e-05 Score=86.59 Aligned_cols=211 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred CCcEEEEecCCCeEeEEeeCC--Cc------------------------------EEEEEEeeCCCCEEEEEecCC----
Q 005956 329 DKTVRMWQVGCNQCLNVFDHH--NY------------------------------VTCVQFNPIDDNYFISGSIDG---- 372 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~--~~------------------------------V~~l~f~p~d~~~l~sgs~Dg---- 372 (667)
++.|..+|..+++.+..+... .+ ...+++.| ...+++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 589999999999998877421 00 11367887 677888887766
Q ss_pred ---------------eEEEEecCCCeEEEecc---cC-------CceEEEEEeeCCC---EEEEEecCCcEEEEEecCCc
Q 005956 373 ---------------KVRIWGVCEKRVVDWAD---VR-------DVISAICYIPDGK---GFIVGSITGTCHFYKASGND 424 (667)
Q Consensus 373 ---------------~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~spdg~---~l~~gs~dg~i~l~d~~~~~ 424 (667)
.|..+|..+++.+-... +. ..+....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 39999999999774222 11 2233334445775 68889999999999999888
Q ss_pred ceeeeEeecc-----ccC-cCCC------------------------CeEEEEEccCCCeEEEEE---------------
Q 005956 425 LKLEKVDFHD-----RKK-TSGN------------------------KITGIQFSRDESQRIMIT--------------- 459 (667)
Q Consensus 425 ~~~~~~~~~~-----~~~-~~~~------------------------~I~~l~~sp~g~~~l~~~--------------- 459 (667)
+... ..+.. ... .... .-..++++|+.+ ++++.
T Consensus 336 ~l~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~ 413 (668)
T 1kv9_A 336 LISA-EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDF 413 (668)
T ss_dssp EEEE-EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGC
T ss_pred Eecc-ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeecccc
Confidence 7522 10000 000 0000 011267777643 33321
Q ss_pred ---------------------eCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 005956 460 ---------------------SEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 460 ---------------------s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
..+|.|..||..+.....+.. .........+...+.+|+.++.|+.|++||..+++..
T Consensus 414 ~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 414 VTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp CCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-CCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 123789999988766555432 1222333344456789999999999999999999876
Q ss_pred cccccc--CccceeEEccCCc-EEEEec
Q 005956 519 SSKQKN--SVRSCEHFFSEGV-SVAVQW 543 (667)
Q Consensus 519 ~~~~~~--~~~~~~~fs~dg~-~lav~w 543 (667)
...... ....-+.+..+|+ +++++-
T Consensus 493 ~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 493 WQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eEecCCCCcccCceEEEECCEEEEEEEe
Confidence 554322 2223355667787 555543
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.22 E-value=0.00038 Score=67.68 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=119.0
Q ss_pred ccEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCC
Q 005956 223 GCIWTLKFSPDGRYLASGGEDG--VVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEES 300 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg--~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (667)
.-...+.|++ +.+..+.+.+| .|+++|+.+++.....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~---------------------------------------- 59 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA---------------------------------------- 59 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE----------------------------------------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE----------------------------------------
Confidence 3466899986 66677777654 8999999985443211
Q ss_pred cceeeeccccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 301 PLQELHGHKGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 301 ~~~~l~gh~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
.+..+. --..++...+..+...-.++.+.+||..+.+.+..+.....-+.++ + ++..|+.+..++.|.++|..
T Consensus 60 ---~l~~~~-fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~ 132 (243)
T 3mbr_X 60 ---EVPPPY-FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIRKLDPD 132 (243)
T ss_dssp ---ECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEEEECTT
T ss_pred ---eCCCCc-ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEEEEeCC
Confidence 000110 0122333333344455678999999999999999998655445555 4 56666666678899999999
Q ss_pred CCeEEEecccC------CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-------cCCCCeEEEE
Q 005956 381 EKRVVDWADVR------DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-------TSGNKITGIQ 447 (667)
Q Consensus 381 ~~~~~~~~~~~------~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-------~~~~~I~~l~ 447 (667)
+.+++...... ..++.+.+. +|+.++..-.+..|.+.|..+++... .+.+.+-.. ....-.++|+
T Consensus 133 t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~-~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 133 TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA-WIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE-EEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE-EEECCcCccccccccCCcCCceEEEE
Confidence 98776533221 345667765 66655444467899999999887643 344332211 1234678999
Q ss_pred EccCCCeEEEEE
Q 005956 448 FSRDESQRIMIT 459 (667)
Q Consensus 448 ~sp~g~~~l~~~ 459 (667)
+.|++..++++|
T Consensus 211 ~d~~~~~lfVTG 222 (243)
T 3mbr_X 211 FDAEHDRLFVTG 222 (243)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCEEEEEC
Confidence 999864444444
No 260
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.21 E-value=0.00089 Score=70.61 Aligned_cols=199 Identities=6% Similarity=-0.071 Sum_probs=126.4
Q ss_pred cceEEEEecCC-Ce-EEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNS-NY-LLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~-~~-l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~ 386 (667)
..+..++|.+. +. +++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 45788999964 44 4455567889999998766544443 233556788887455566666667889999987654333
Q ss_pred e-cccCCceEEEEEeeCCCEEEEEec-C-CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 387 W-ADVRDVISAICYIPDGKGFIVGSI-T-GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 387 ~-~~~~~~v~~v~~spdg~~l~~gs~-d-g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
. .........++++|.+..|+.... . +.|..+++....... +... .......|+++|+++.++++-+..+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~-----~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADT-----HLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECS-----SCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EEEC-----CCCCeeeEEEeCCCCEEEEEECCCC
Confidence 2 223356889999997666665543 3 678888876543321 1111 1245789999987656666666778
Q ss_pred cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
.|..+|.... ...+.. ........+++ ..+..+++-...+.|..++..++..
T Consensus 269 ~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 269 VIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 8999987532 222222 23456678888 3444555555677888888655543
No 261
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.0007 Score=72.50 Aligned_cols=241 Identities=12% Similarity=0.104 Sum_probs=136.2
Q ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcce
Q 005956 225 IWTLKFSP-DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQ 303 (667)
Q Consensus 225 I~~v~fsp-dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (667)
-..|+++| ++..|..+...+.|+.+|..... +.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~----------------------------------------------v~ 172 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY----------------------------------------------VS 172 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE----------------------------------------------EE
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE----------------------------------------------EE
Confidence 46789998 45556666555778888876421 22
Q ss_pred eeeccccceEEEEecCCC-eEEEEeCC-C----cEEEEecCCCeEe--EEeeCCCcEEEEEEeeCCCCEEEEEecCCeEE
Q 005956 304 ELHGHKGDVLDLAWSNSN-YLLSCSMD-K----TVRMWQVGCNQCL--NVFDHHNYVTCVQFNPIDDNYFISGSIDGKVR 375 (667)
Q Consensus 304 ~l~gh~~~V~~l~~s~~~-~l~s~s~D-g----~I~iWd~~~~~~~--~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~ 375 (667)
.+.........|+|++++ +|+.+... + .+.+.+.. +... ..+........++++|.++.++++-..++.|.
T Consensus 173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~ 251 (430)
T 3tc9_A 173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVF 251 (430)
T ss_dssp EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEE
Confidence 222234557889999988 46666542 1 23334432 2211 22322334567789985566666666778999
Q ss_pred EEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCccee---eeEeec-ccc--------CcCC
Q 005956 376 IWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLKL---EKVDFH-DRK--------KTSG 440 (667)
Q Consensus 376 iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~~---~~~~~~-~~~--------~~~~ 440 (667)
.++..++....+. ........++|+|+|++|+++ ...+.|..++........ ..+.-. +.. ....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 252 RYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp EEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred EEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 9999887653322 223457899999999955554 467789998876431111 011110 000 0001
Q ss_pred CCeE-EEEEc--------cCCCeEEEEEeCCCcEEEEECCcceeeEEeCC----------------CCCCeEEEEEcCC-
Q 005956 441 NKIT-GIQFS--------RDESQRIMITSEDSKLRILDGVDVIHKFKGLP----------------KSGSQMSASFTTT- 494 (667)
Q Consensus 441 ~~I~-~l~~s--------p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~v~~spd- 494 (667)
..-. .+... ++| .++++-...+.|+.++..-.+..+.+.. .-.....++++|+
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 410 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER 410 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC
Confidence 1223 45443 232 4444445567888888543333333320 0125789999995
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 005956 495 GKHIISIGDDCRVYVWNYD 513 (667)
Q Consensus 495 g~~l~sgs~Dg~I~iWd~~ 513 (667)
+.++++-..+..|+.++++
T Consensus 411 g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 411 ECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEECCCCeEEEEccC
Confidence 5444444456778887764
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.00029 Score=81.30 Aligned_cols=241 Identities=8% Similarity=0.031 Sum_probs=131.3
Q ss_pred cccc-cEEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-ceeeeeeCCCCCccccCCCCeEEecccCCCCceeecC
Q 005956 220 AHKG-CIWTLKFS-PDGRYLASGGE-DG----VVRIWHVTSV-AASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIP 291 (667)
Q Consensus 220 ~H~~-~I~~v~fs-pdg~~Latgs~-Dg----~I~vWdv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (667)
+|.- .+...+|| |||++||-+.. +| .|+++|+.++ ...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---------------------------------- 215 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI---------------------------------- 215 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----------------------------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----------------------------------
Confidence 4443 68889999 99998886543 22 5999998863 210
Q ss_pred CCcccccCCcceeeeccccceEEEEecCCC-eEEEEeCC-----CcEEEEecCCCeE--eEEee--CCCcEEEEEEeeCC
Q 005956 292 DEVFQIEESPLQELHGHKGDVLDLAWSNSN-YLLSCSMD-----KTVRMWQVGCNQC--LNVFD--HHNYVTCVQFNPID 361 (667)
Q Consensus 292 ~~~~~~~~~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D-----g~I~iWd~~~~~~--~~~~~--h~~~V~~l~f~p~d 361 (667)
...+. .....++|+||+ .|+....| ..|.++++.++.. ...+. .......+.|+| |
T Consensus 216 ----------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-D 281 (751)
T 2xe4_A 216 ----------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-D 281 (751)
T ss_dssp ----------CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-T
T ss_pred ----------Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-C
Confidence 00011 113468899998 66655554 3688889887642 23332 334567889999 9
Q ss_pred CCEEEEEec---CCeEEEEecCCC--eE--EEecc-cCCceEEEEEeeCCCEEEEEecC---C--cEEEEEecCCcceee
Q 005956 362 DNYFISGSI---DGKVRIWGVCEK--RV--VDWAD-VRDVISAICYIPDGKGFIVGSIT---G--TCHFYKASGNDLKLE 428 (667)
Q Consensus 362 ~~~l~sgs~---Dg~v~iwdl~~~--~~--~~~~~-~~~~v~~v~~spdg~~l~~gs~d---g--~i~l~d~~~~~~~~~ 428 (667)
+++|+..+. ...|+++|+.++ +. ..+.. .......+.|+ +|+.|+..+.. + .|..+++.+... ..
T Consensus 282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~ 359 (751)
T 2xe4_A 282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSD-WS 359 (751)
T ss_dssp SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTC-CC
T ss_pred CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCccc-ce
Confidence 998877663 346888999875 33 33332 23334444443 36666655443 3 455555543111 11
Q ss_pred e-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc--EEEEEC-------Ccc--eeeEEeCCCCCCeEEEEE----c
Q 005956 429 K-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--LRILDG-------VDV--IHKFKGLPKSGSQMSASF----T 492 (667)
Q Consensus 429 ~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~--I~iwd~-------~~~--~~~~~~~~~~~~v~~v~~----s 492 (667)
. +..+. ....+..+.+. +..++++...++. |+++|+ ... ...+.. .....+..+.+ +
T Consensus 360 ~~li~~~----~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l-~~~~~~~~~~~~~~~~ 432 (751)
T 2xe4_A 360 HVLVDHS----EDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVM-EEPIFTVHLVESQMLE 432 (751)
T ss_dssp CEEECCC----SSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCC-CCSSCEEEECGGGCCC
T ss_pred eeEECCC----CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECC-CCceeEEEeccCcccC
Confidence 1 11111 01134555554 3467777777775 555664 221 222221 11222333322 3
Q ss_pred CCCC-EEEEEeCC---CcEEEEEcCCCCc
Q 005956 493 TTGK-HIISIGDD---CRVYVWNYDELCF 517 (667)
Q Consensus 493 pdg~-~l~sgs~D---g~I~iWd~~~~~~ 517 (667)
+++. ++++.+.. ..|+.+|+.+++.
T Consensus 433 ~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 433 YEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 4654 44444432 4688888877653
No 263
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.09 E-value=0.00081 Score=72.07 Aligned_cols=204 Identities=9% Similarity=0.038 Sum_probs=114.1
Q ss_pred ccceEEEEecCCCeEEEEeCC----C-cEEEEecCCCeE-eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 309 KGDVLDLAWSNSNYLLSCSMD----K-TVRMWQVGCNQC-LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~D----g-~I~iWd~~~~~~-~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
......++|++++.|+.+... . .+...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 345789999999844444332 1 133333222111 1122223345667888855666556556788999999877
Q ss_pred eE-EEec--ccCCceEEEEEeeCCCEEEEEe-cCCcEEEEEecC--Cccee-eeEeec-cc--------cCcCCCCeEEE
Q 005956 383 RV-VDWA--DVRDVISAICYIPDGKGFIVGS-ITGTCHFYKASG--NDLKL-EKVDFH-DR--------KKTSGNKITGI 446 (667)
Q Consensus 383 ~~-~~~~--~~~~~v~~v~~spdg~~l~~gs-~dg~i~l~d~~~--~~~~~-~~~~~~-~~--------~~~~~~~I~~l 446 (667)
.. ..+. ........++|+|+|+.|+++. ..+.|+.++... ..+.. ..+.-. +. ..........+
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 65 2221 1222345699999999665554 567888888753 22210 111110 00 00112346678
Q ss_pred EE---------ccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC----------------CCCeEEEEEc-CCCCEEEE
Q 005956 447 QF---------SRDESQRIMITSEDSKLRILDGVDVIHKFKGLPK----------------SGSQMSASFT-TTGKHIIS 500 (667)
Q Consensus 447 ~~---------sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----------------~~~v~~v~~s-pdg~~l~s 500 (667)
++ .++| .++++-...+.|+.++..-.+..+.+... -.....++++ ++|.++++
T Consensus 341 av~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 88 5554 55555566778999986443444433211 1346789999 56655555
Q ss_pred EeCCCcEEEEEcC
Q 005956 501 IGDDCRVYVWNYD 513 (667)
Q Consensus 501 gs~Dg~I~iWd~~ 513 (667)
=..++.|+..+++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 5566788887764
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.09 E-value=0.0057 Score=62.38 Aligned_cols=199 Identities=11% Similarity=-0.038 Sum_probs=123.5
Q ss_pred cceEEEEecCCC-e-EEEEeCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 310 GDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 310 ~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
..+..++|.+.+ . +++-...+.|..+++.. ......+. .-.....+++.+.+++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 457889999754 4 44555678999999876 22222232 22456788998735555566567789999999876
Q ss_pred eEEEecc-cCCceEEEEEeeCCCEEEEEecC--CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 383 RVVDWAD-VRDVISAICYIPDGKGFIVGSIT--GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 383 ~~~~~~~-~~~~v~~v~~spdg~~l~~gs~d--g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
....+.. .......++++|.+..|+..... +.|..+++....... +. .. .......++++++++.++++-
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~-~~----~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV-TE----NIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE-CS----SCSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EE-EC----CCCCceEEEEeccCCEEEEEE
Confidence 5443322 33568899999976666555443 678888876443221 11 11 125678999998865666666
Q ss_pred eCCCcEEEEECCc-ceeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 460 SEDSKLRILDGVD-VIHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 460 s~dg~I~iwd~~~-~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+..+.|..+|... ....+.. .........+++. .+..+++-...+.|..++..++.
T Consensus 183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 6778999999752 2223322 1223456778875 34445555566789888876654
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.013 Score=67.76 Aligned_cols=200 Identities=12% Similarity=0.052 Sum_probs=130.4
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEe----eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVF----DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
...|.++...+++.|..|+.++-|..|+..++...... .....|.++...+ ++. |..|+.++-|..+|..+++.
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKF 439 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcE
Confidence 35689999888887888887777999998765433211 1345788988876 555 45577767799999988877
Q ss_pred EEecc---cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 385 VDWAD---VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 385 ~~~~~---~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
..... ....|.++...++|+ |.+|+. +-+..||..+...... ............|.++...++| .|.+++.
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~g--~lWigt~ 513 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHH--YDTSNSQLLENFVRSIAQDSEG--RFWIGTF 513 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEE--ECTTTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEec--ccCcccccccceeEEEEEcCCC--CEEEEEc
Confidence 65432 346788888887775 666666 5688898876554321 1111011123678999988886 4555665
Q ss_pred CCcEEEEECCcc-eeeEEeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 462 DSKLRILDGVDV-IHKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 462 dg~I~iwd~~~~-~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
++-|..||.... ...+... -....|.++...++|.+.++.. +|.|..||..+...
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 445778886532 2222211 1245688999988988666554 67658888877653
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.06 E-value=0.0037 Score=64.80 Aligned_cols=226 Identities=9% Similarity=-0.039 Sum_probs=137.5
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD- 389 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~- 389 (667)
..+|.+..++.+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|..+++.+.....+..
T Consensus 35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34455555555444443 3468888888776666665556789999998455555555567889999998766444322
Q ss_pred cCCceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEE
Q 005956 390 VRDVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRI 467 (667)
Q Consensus 390 ~~~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~i 467 (667)
....+..+++.+.+..| ++-...+.|.++++.+..... + .. ........+++.|.++.++++-... +.|..
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l-~~----~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LW----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--E-EC----TTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--E-Ee----CCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 23456789999855544 555556789999987543221 1 11 1124568999999765555555555 78988
Q ss_pred EECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecCC
Q 005956 468 LDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 468 wd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~~ 545 (667)
+++..................++++|++..|+.+. ..+.|..++++.......... ......+++ .++.+..+.|..
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 88763222221112345678999998877777665 457899999886543222111 111223344 345555555543
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.00 E-value=0.00072 Score=75.44 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=129.4
Q ss_pred CCeEEEEe------CCCcEEEEecCCCeEeEEeeCCCcE---------------------------------------EE
Q 005956 320 SNYLLSCS------MDKTVRMWQVGCNQCLNVFDHHNYV---------------------------------------TC 354 (667)
Q Consensus 320 ~~~l~s~s------~Dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 354 (667)
++.++.++ .++.|+.+|..+++.+..+...... ..
T Consensus 166 ~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~ 245 (599)
T 1w6s_A 166 KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW 245 (599)
T ss_dssp TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccc
Confidence 45555544 3799999999999998877532211 13
Q ss_pred EEEeeCCCCEEEEEecC----------------CeEEEEecCCCeEEEecc---cCC-------ceEEEEEe-eCC---C
Q 005956 355 VQFNPIDDNYFISGSID----------------GKVRIWGVCEKRVVDWAD---VRD-------VISAICYI-PDG---K 404 (667)
Q Consensus 355 l~f~p~d~~~l~sgs~D----------------g~v~iwdl~~~~~~~~~~---~~~-------~v~~v~~s-pdg---~ 404 (667)
+++.+ ...+++.+..+ +.|..+|..+++++-... +.. ...-+... .+| .
T Consensus 246 ~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred eeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 45666 56677777655 379999999998764222 110 11112222 467 4
Q ss_pred EEEEEecCCcEEEEEecCCcceeeeEeeccc------cC-cCCCC--------------------------eEEEEEccC
Q 005956 405 GFIVGSITGTCHFYKASGNDLKLEKVDFHDR------KK-TSGNK--------------------------ITGIQFSRD 451 (667)
Q Consensus 405 ~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~------~~-~~~~~--------------------------I~~l~~sp~ 451 (667)
.++.++.+|.+.++|..+++..... .+... .. ....+ -..++++|+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSAN-KLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEE-ESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEECCCcEEEEEECCCCCEeecc-cccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 6777889999999999988775431 11100 00 00001 123556665
Q ss_pred CCeEEEEE---------------------------------e------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEc
Q 005956 452 ESQRIMIT---------------------------------S------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFT 492 (667)
Q Consensus 452 g~~~l~~~---------------------------------s------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 492 (667)
. .++++. + ..|.|..||+.+.....+.. ...+...-.+.
T Consensus 404 ~-~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~ 481 (599)
T 1w6s_A 404 R-ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMA 481 (599)
T ss_dssp T-TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEE
T ss_pred C-CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceE
Confidence 3 233221 1 34678888887655444432 11111111122
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCcccccccc--CccceeEEccCCc-EEEEecC
Q 005956 493 TTGKHIISIGDDCRVYVWNYDELCFPSSKQKN--SVRSCEHFFSEGV-SVAVQWP 544 (667)
Q Consensus 493 pdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~--~~~~~~~fs~dg~-~lav~w~ 544 (667)
..+.+|+.++.|+.|+.||.++++........ ....-+.|..+|+ ++++...
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 35678888999999999999999987654322 2333456778886 5555433
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.99 E-value=0.00043 Score=79.81 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=110.2
Q ss_pred ceEEEEec-CCC-eEEE-EeCCC----cEEEEecCCC-eEeEEeeCCCcEEEEEEeeCCCCEEEEEecC-----CeEEEE
Q 005956 311 DVLDLAWS-NSN-YLLS-CSMDK----TVRMWQVGCN-QCLNVFDHHNYVTCVQFNPIDDNYFISGSID-----GKVRIW 377 (667)
Q Consensus 311 ~V~~l~~s-~~~-~l~s-~s~Dg----~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iw 377 (667)
.+...+|| ||| +|+. ...+| +|+++|+.++ +.+... .......+.|+| |++.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 999 5553 33333 5999999998 632110 011134678999 88887777765 368888
Q ss_pred ecCCCe----EEEecccCCceEEEEEeeCCCEEEEEecC---CcEEEEEecCCccee--eeEeeccccCcCCCCeEEEEE
Q 005956 378 GVCEKR----VVDWADVRDVISAICYIPDGKGFIVGSIT---GTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQF 448 (667)
Q Consensus 378 dl~~~~----~~~~~~~~~~v~~v~~spdg~~l~~gs~d---g~i~l~d~~~~~~~~--~~~~~~~~~~~~~~~I~~l~~ 448 (667)
++.+++ ++...........+.|+|||++|+..... ..|.++|+.+..... ..+ .. ........+.|
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~---~~~~~~~s~~~ 327 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RP---REKGVRYDVQM 327 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SC---CCTTCCEEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ec---CCCCceEEEee
Confidence 887753 22211223446778999999998876633 367778887652211 111 11 11244455555
Q ss_pred ccCCCeEEEEEeCC----CcEEEEECCcc--eee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEEc
Q 005956 449 SRDESQRIMITSED----SKLRILDGVDV--IHK-FKGLPKSGSQMSASFTTTGKHIISIGDDCR--VYVWNY 512 (667)
Q Consensus 449 sp~g~~~l~~~s~d----g~I~iwd~~~~--~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~--I~iWd~ 512 (667)
+. |..+++.+..+ ..|..+|+... ... +........+..+.+. .+.++++...++. |+++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 44 44666666554 26777776531 122 2221112234555554 2344556666775 555564
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.99 E-value=0.012 Score=62.03 Aligned_cols=202 Identities=11% Similarity=-0.032 Sum_probs=126.5
Q ss_pred cccceEEEEecCCC-eEE-EEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 308 HKGDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 308 h~~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
....+..|+|++.+ .|+ +-...+.|+.+++... .....+. .......+++.+..++++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567899999754 444 5556788999988752 2233333 445678899987456666666677899999998
Q ss_pred CCeEEEec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 381 ~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
........ .....+..++++|.+..|+.... .+.|...++.+...... + . ........|++.++++.+++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-~--~----~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-V--T----ENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-E--C----SSCSCEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-E--E----CCCCceEEEEEEeCCCEEEE
Confidence 76554433 23455889999997666665542 36788888875433211 1 1 11256789999988655555
Q ss_pred EEeCCCcEEEEECCcc-eeeE-EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 458 ITSEDSKLRILDGVDV-IHKF-KGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~~-~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+-...+.|..+|+... ...+ ...........+++. .+..+++-...+.|..+|..++..
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 6566788999997632 2222 222233456677773 334444555667898888666654
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.99 E-value=0.0029 Score=66.66 Aligned_cols=223 Identities=9% Similarity=-0.034 Sum_probs=135.6
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc-cC
Q 005956 313 LDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD-VR 391 (667)
Q Consensus 313 ~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~-~~ 391 (667)
.+.+..+..+|+.+. ...|+..++..............+..++|.+.++.++++-...+.|+.+++.+.....+.. ..
T Consensus 80 ~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 80 SCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 344444544444443 3578888988776666666666789999998455555555567889999998876544322 23
Q ss_pred CceEEEEEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEE
Q 005956 392 DVISAICYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILD 469 (667)
Q Consensus 392 ~~v~~v~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd 469 (667)
.....+++.+.+..| ++-...+.|.++++.+..... + .. ........+++.|.++.++++-... +.|..++
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l-~~----~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--L-LW----QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--E-EC----SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--e-ec----CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 356778898855554 444556788888876543221 1 11 1124578999998765555555455 7888888
Q ss_pred CCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCccccccc-cCccceeEEccCCcEEEEecC
Q 005956 470 GVDVIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCFPSSKQK-NSVRSCEHFFSEGVSVAVQWP 544 (667)
Q Consensus 470 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~-~~~~~~~~fs~dg~~lav~w~ 544 (667)
+..................++|+|++..|+.+. ..+.|..++++.......... ......+++ ..+.+..+.|.
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~ 307 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH 307 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCC
Confidence 763322222222345678999998877776664 457899999876543222211 112223444 34555555554
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.98 E-value=0.0048 Score=62.95 Aligned_cols=181 Identities=8% Similarity=-0.075 Sum_probs=115.8
Q ss_pred CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC----CeEEEec-ccCCceEEEEEeeCCC
Q 005956 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPDGK 404 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~----~~~~~~~-~~~~~v~~v~~spdg~ 404 (667)
..|+..|+.+......+.....+..++|.+.++.++++-...+.|..+++.+ ....... ..-..+..+++.+.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 5689999988776666666677899999983444555555668999999876 2222222 2224568899987555
Q ss_pred EE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeCCC
Q 005956 405 GF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGLPK 482 (667)
Q Consensus 405 ~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~ 482 (667)
.| ++-...+.|.++++.+..... .+. . .......+++.|.++.++++.... +.|..+++............
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~-~~~-~-----~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~ 162 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred eEEEEECCCCEEEEEeCCCCceEE-EEE-C-----CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECC
Confidence 55 444567899999987543221 111 1 124678999998754544444333 68888886532222222123
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 483 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 483 ~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
......+++++++..|+.+. ..+.|..+|++....
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence 45678999999887777665 457899999986443
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.035 Score=64.08 Aligned_cols=249 Identities=11% Similarity=0.063 Sum_probs=151.6
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..|.+|...++|..|..|+.++-+..||..+.......... ...
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~------------------------------------~~~ 109 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNP------------------------------------EDP 109 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCT------------------------------------TCS
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeecccc------------------------------------CCC
Confidence 45999999988874666777755899998753221110000 000
Q ss_pred eeeeccccceEEEEecC--CCeEEEEeCCCcEEEEecCCCeEeEEee------CCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 303 QELHGHKGDVLDLAWSN--SNYLLSCSMDKTVRMWQVGCNQCLNVFD------HHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~--~~~l~s~s~Dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.. -....|.++.... ++.|..++.++-|..||..+++...... ....|.++...+ ++ .|..|+.++-|
T Consensus 110 ~~--l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g-~lwigt~~~Gl 185 (781)
T 3v9f_A 110 QS--LITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAE-DG-KLYIGHVEGGL 185 (781)
T ss_dssp SS--CSCSCEEEEEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEE-TT-EEEEEETTTEE
T ss_pred CC--cccCcceEEEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECC-CC-CEEEEecCCCe
Confidence 00 0123588888877 7877777756668999988776544321 134688888876 55 45556666569
Q ss_pred EEEecCCCeEEEecc--------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEE
Q 005956 375 RIWGVCEKRVVDWAD--------VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~--------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l 446 (667)
..||..+++...+.. ....|.++...++|. |.+|+.+ -+.+||..+....................|.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i 263 (781)
T 3v9f_A 186 SILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSI 263 (781)
T ss_dssp EEEETTTTEEEEECC--------CCSSEEEEEECTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEE
T ss_pred EEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEE
Confidence 999998877654321 135688888887775 4556655 688898776544321111000001123679999
Q ss_pred EEccCCCeEEEEEeCCCcEEEEECCcce-eeEEe-------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 005956 447 QFSRDESQRIMITSEDSKLRILDGVDVI-HKFKG-------------LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 447 ~~sp~g~~~l~~~s~dg~I~iwd~~~~~-~~~~~-------------~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~ 512 (667)
...++| .|.+++..+-|.++|..... ..+.. .-....|.++...++|. |-.|..++-|..|+.
T Consensus 264 ~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 264 KQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp EECTTS--EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred EECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 988876 56677775678889865322 11111 01245688999988886 445666677899988
Q ss_pred CCCC
Q 005956 513 DELC 516 (667)
Q Consensus 513 ~~~~ 516 (667)
....
T Consensus 341 ~~~~ 344 (781)
T 3v9f_A 341 APPT 344 (781)
T ss_dssp SCCS
T ss_pred CCCc
Confidence 7654
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.004 Score=67.17 Aligned_cols=207 Identities=8% Similarity=0.029 Sum_probs=119.6
Q ss_pred cceEEEEe-------cCCC-eEEEEeCCC-------cEEEEecCC-CeEe-----EEeeCCCcEEEEEEeeCCCCEEEEE
Q 005956 310 GDVLDLAW-------SNSN-YLLSCSMDK-------TVRMWQVGC-NQCL-----NVFDHHNYVTCVQFNPIDDNYFISG 368 (667)
Q Consensus 310 ~~V~~l~~-------s~~~-~l~s~s~Dg-------~I~iWd~~~-~~~~-----~~~~h~~~V~~l~f~p~d~~~l~sg 368 (667)
.....|+| ++++ .|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35788999 8888 566665543 255665333 1221 1222112335678898556666666
Q ss_pred ecCCeEEEEecC-------CCeE--------------EEecccCCceEEEEEeeCCCEEEEE-ecCCcEEEEEecCCcce
Q 005956 369 SIDGKVRIWGVC-------EKRV--------------VDWADVRDVISAICYIPDGKGFIVG-SITGTCHFYKASGNDLK 426 (667)
Q Consensus 369 s~Dg~v~iwdl~-------~~~~--------------~~~~~~~~~v~~v~~spdg~~l~~g-s~dg~i~l~d~~~~~~~ 426 (667)
..++.|..+|+. ++.. +...........++|+|+|+.|.++ +....|+.++.......
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 778889999997 4543 1112223456899999999965554 45678888776543211
Q ss_pred e---eeEeec-ccc--------CcCCCCeE-EEEEc-------cCCCeEEEEEeCCCcEEEEECCcceeeEEeCCC----
Q 005956 427 L---EKVDFH-DRK--------KTSGNKIT-GIQFS-------RDESQRIMITSEDSKLRILDGVDVIHKFKGLPK---- 482 (667)
Q Consensus 427 ~---~~~~~~-~~~--------~~~~~~I~-~l~~s-------p~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~---- 482 (667)
. ..+.-. +.. ........ .+... ++ +.++++-....+|+.++..-.+.++.+...
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~-g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~ 424 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEE-YDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSL 424 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCC-EEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCC-CeEEEEECCCCEEEEEeCCCCEEEEecccccccc
Confidence 1 111111 100 01112234 44443 33 355666667789999986544555544311
Q ss_pred ------------------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 005956 483 ------------------SGSQMSASFTTT-GKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 483 ------------------~~~v~~v~~spd-g~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
-.....++++++ |.++++=..+..|+.++++....
T Consensus 425 ~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 425 ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 134678999987 65555555677899999877654
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.028 Score=57.42 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=115.9
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV 384 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~ 384 (667)
...+.+|.|.+ +.++.++.++.|.. ..+.++.-.... +...+..+.+.+ ++..++.+ .++.|.. ....++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 34578888876 53334455664433 233343333322 234577888876 56555554 4565432 2222321
Q ss_pred E-E-ecccCCceEEEEEeeCCCEEEEEecCCcEEE-EEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 385 V-D-WADVRDVISAICYIPDGKGFIVGSITGTCHF-YKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 385 ~-~-~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l-~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
- . .......+..+.+.|++.+++++. .|.+.. .|-...... .+.. .....+..+.+.+++ . +++.+.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~--~~~~-----~~~~~~~~~~~~~~g-~-~~~~~~ 223 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWE--PHNR-----TTSRRLHNMGFTPDG-R-LWMIVN 223 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCE--EEEC-----CSSSCEEEEEECTTS-C-EEEEET
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCcee--ECCC-----CCCCccceeEECCCC-C-EEEEeC
Confidence 1 1 223445688999999988777664 444433 222111111 1111 123568889998886 3 455667
Q ss_pred CCcEEEEECCcce--eeEEeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc----ccCccceeEEc
Q 005956 462 DSKLRILDGVDVI--HKFKGL--PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ----KNSVRSCEHFF 533 (667)
Q Consensus 462 dg~I~iwd~~~~~--~~~~~~--~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~----~~~~~~~~~fs 533 (667)
+|.+++.+..... ...... .....+.++.+.+++..++++. +|.| ++..+.+..-.... .......+.|.
T Consensus 224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 224 GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 7888877421111 111111 1234578899998887777654 6766 45555554321111 11233456777
Q ss_pred cCCcEEEEecC
Q 005956 534 SEGVSVAVQWP 544 (667)
Q Consensus 534 ~dg~~lav~w~ 544 (667)
+++..+++...
T Consensus 302 ~~~~~~~~G~~ 312 (327)
T 2xbg_A 302 SPDQGFILGQK 312 (327)
T ss_dssp ETTEEEEECST
T ss_pred CCCceEEEcCC
Confidence 77777776543
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.86 E-value=0.018 Score=58.79 Aligned_cols=199 Identities=7% Similarity=-0.075 Sum_probs=126.1
Q ss_pred cceEEEEecCC-C-eEEEEeCCCcEEEEecCCCeEe-EEe-eCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 310 GDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCNQCL-NVF-DHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 310 ~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~~~~-~~~-~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
..+.++.|.+. + .+.+-...+.|..+++...... ..+ ..-.....+++.+.+++++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678999874 4 4445566788999998766321 222 223456678888745666666666789999998865433
Q ss_pred Ee-cccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 386 DW-ADVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 386 ~~-~~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.+ .........+++.|.+..|+.... .+.|..+++....... +... ....-..++++++++.++++-+..
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~-----~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINS-----EIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECS-----SCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEEC-----CCCCccEEEEeccCCEEEEEECCC
Confidence 32 234456889999997666666553 5778888776533221 1101 124568999999765666666677
Q ss_pred CcEEEEECCc-ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 463 SKLRILDGVD-VIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 463 g~I~iwd~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+.|..+|... ....+. .........+++.. +..+.+-...+.|..++..++..
T Consensus 188 ~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 8999999762 222222 12345567788753 34444555668899999876654
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.85 E-value=0.0042 Score=69.14 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=97.4
Q ss_pred CeEEEEecCCCeEEEecc---cC-------CceEEEEEe-eCCC---EEEEEecCCcEEEEEecCCcceeeeEeecc---
Q 005956 372 GKVRIWGVCEKRVVDWAD---VR-------DVISAICYI-PDGK---GFIVGSITGTCHFYKASGNDLKLEKVDFHD--- 434 (667)
Q Consensus 372 g~v~iwdl~~~~~~~~~~---~~-------~~v~~v~~s-pdg~---~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~--- 434 (667)
+.|..+|..+++.+-... +. ....-+... .+|+ .++.++.+|.++++|..+++.... ..+..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~-~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNA-FPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEE-EESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecc-cccccCcc
Confidence 589999999999774321 21 011112222 4674 678899999999999988876543 11110
Q ss_pred ----------c------cCc--------CC------------CCeEEEEEccCCCeEEEEEe------------------
Q 005956 435 ----------R------KKT--------SG------------NKITGIQFSRDESQRIMITS------------------ 460 (667)
Q Consensus 435 ----------~------~~~--------~~------------~~I~~l~~sp~g~~~l~~~s------------------ 460 (667)
. ... .. .....++++|+.+ ++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence 0 000 00 0011356666543 333322
Q ss_pred ---------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCccccccccC
Q 005956 461 ---------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQKNS 525 (667)
Q Consensus 461 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~ 525 (667)
.+|.|..||+.+.....+.... ..+..-.+...+.+|+.++.|+.++.||.++++.........
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 2578899998765544443211 111111122246788889999999999999999876644332
Q ss_pred --ccceeEEccCCc-EEEEecC
Q 005956 526 --VRSCEHFFSEGV-SVAVQWP 544 (667)
Q Consensus 526 --~~~~~~fs~dg~-~lav~w~ 544 (667)
...-+.|..+|+ ++++...
T Consensus 528 g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CCCSCCEEEEETTEEEEEEEEC
T ss_pred CcccCceEEEECCEEEEEEEcc
Confidence 223366778886 5555443
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.77 E-value=0.011 Score=62.59 Aligned_cols=188 Identities=9% Similarity=-0.048 Sum_probs=120.5
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC----eEEE-ecccCCceEE
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK----RVVD-WADVRDVISA 396 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~----~~~~-~~~~~~~v~~ 396 (667)
+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++... .... .......+..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444443 367999999877766666677788999999844445555456788999998762 2222 2223456788
Q ss_pred EEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC-CCcEEEEECCcce
Q 005956 397 ICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-DSKLRILDGVDVI 474 (667)
Q Consensus 397 v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~-dg~I~iwd~~~~~ 474 (667)
+++.+. ++.+++-...+.|.+.++.+...... +. . .......|++.|.++.++++-.. .+.|...++....
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-~~-~-----~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-EE-C-----SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEE-Ee-C-----CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 999984 44455555678899888875543221 11 1 12457899999975444444323 4789988876332
Q ss_pred eeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 475 HKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 475 ~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
..............+++++++..|+.+. ..+.|..+|++....
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 2222222346788999999888887775 457899999876544
No 278
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.72 E-value=0.006 Score=61.85 Aligned_cols=206 Identities=8% Similarity=0.113 Sum_probs=127.0
Q ss_pred eeccccceEEEEecCCC-eEEEEe-CCCcEEEEecCCCeEeEE-eeC-------CCcEEEEEE---eeCCCCEEEEEec-
Q 005956 305 LHGHKGDVLDLAWSNSN-YLLSCS-MDKTVRMWQVGCNQCLNV-FDH-------HNYVTCVQF---NPIDDNYFISGSI- 370 (667)
Q Consensus 305 l~gh~~~V~~l~~s~~~-~l~s~s-~Dg~I~iWd~~~~~~~~~-~~h-------~~~V~~l~f---~p~d~~~l~sgs~- 370 (667)
+.....--.++.|.+.. .|+.++ ..++|..|+...+..... +.. ...+..+.| .| ++.++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccc
Confidence 33444455678898744 555555 789999999986654433 222 114689999 57 6767765432
Q ss_pred ------------CCeEEEEecC---CCeEEEeccc--------------CCceEEEEEeeCCCEEEEEecC-CcEEEEEe
Q 005956 371 ------------DGKVRIWGVC---EKRVVDWADV--------------RDVISAICYIPDGKGFIVGSIT-GTCHFYKA 420 (667)
Q Consensus 371 ------------Dg~v~iwdl~---~~~~~~~~~~--------------~~~v~~v~~spdg~~l~~gs~d-g~i~l~d~ 420 (667)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 6789999999 6765532221 1248899999999999999988 88877777
Q ss_pred cCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEE----eC-CCCCCeEEE-EEcC
Q 005956 421 SGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFK----GL-PKSGSQMSA-SFTT 493 (667)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~----~~-~~~~~v~~v-~~sp 493 (667)
...... .+.............+.|+++|+| +.|++....+.|..+|+..... .+. +. ........+ ..-.
T Consensus 167 dG~~~~--~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 DGKTVS--TFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp TSCCEE--EEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CCCEEe--eeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 654322 222211111223447899999997 5566655599999999875433 121 11 011223333 3334
Q ss_pred CCCE-EEEEeCCCcEEEEEcCC
Q 005956 494 TGKH-IISIGDDCRVYVWNYDE 514 (667)
Q Consensus 494 dg~~-l~sgs~Dg~I~iWd~~~ 514 (667)
+|+. |++.+..+.+.+.+.+.
T Consensus 244 ~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSST
T ss_pred CCEEEEEEcCCCCEEEEECCCC
Confidence 6777 44555566555555444
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.71 E-value=0.018 Score=56.47 Aligned_cols=203 Identities=12% Similarity=0.137 Sum_probs=123.3
Q ss_pred eeeccccccEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLAS-GGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Lat-gs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
+.|.+-.+.+..++|+|++..|++ ...++.|...|.. +..
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------------------------------- 60 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------------------------------- 60 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE--------------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE--------------------------------------
Confidence 455666678999999998765554 6667777777765 221
Q ss_pred ccccCCcceeee-ccccceEEEEecCCC-eEEEEeCCCcEEEEecCCCeE---eEEee-------CCCcEEEEEEeeCCC
Q 005956 295 FQIEESPLQELH-GHKGDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQC---LNVFD-------HHNYVTCVQFNPIDD 362 (667)
Q Consensus 295 ~~~~~~~~~~l~-gh~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~---~~~~~-------h~~~V~~l~f~p~d~ 362 (667)
+..+. +-......|++.+++ ++++.-.++.+.++++..... +.... .......++|.| .+
T Consensus 61 -------~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~ 132 (255)
T 3qqz_A 61 -------IRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QD 132 (255)
T ss_dssp -------EEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TT
T ss_pred -------EEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CC
Confidence 11111 112457778888888 545555677899998865432 22221 234568999999 66
Q ss_pred CEEEEEecCCeEEEEecCC---C---eEEEe-----cccCCceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeE
Q 005956 363 NYFISGSIDGKVRIWGVCE---K---RVVDW-----ADVRDVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKV 430 (667)
Q Consensus 363 ~~l~sgs~Dg~v~iwdl~~---~---~~~~~-----~~~~~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~ 430 (667)
+.|+++.......+|.+.. . .+... ......+.+++++|... ++++......+..+|.... ....+
T Consensus 133 ~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~ 210 (255)
T 3qqz_A 133 HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEM 210 (255)
T ss_dssp TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEE
T ss_pred CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEE
Confidence 6666666655555555531 1 12111 01233578999999654 5555556678888887754 23333
Q ss_pred eecccc---CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 431 DFHDRK---KTSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 431 ~~~~~~---~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
.+.... ......--.|+|.++| + |++.++.+.++++.
T Consensus 211 ~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 211 SLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT 250 (255)
T ss_dssp ECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred EcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence 333211 0112467899999997 4 56668877777765
No 280
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.70 E-value=0.0052 Score=68.27 Aligned_cols=150 Identities=9% Similarity=-0.032 Sum_probs=91.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEE-EEEeeCCCCEEEEEec------CCeEEEEecCCCeEEEe
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGSI------DGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~d~~~l~sgs~------Dg~v~iwdl~~~~~~~~ 387 (667)
++.++.++.|+.|..+|..+++.+..+.... .+.+ ... .+..++.++. ++.|+.+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4578888899999999999999988775322 2221 111 1345566654 79999999999987642
Q ss_pred cccCCc---------------------------------------eEEEEEeeCCCEEEEEecC----------------
Q 005956 388 ADVRDV---------------------------------------ISAICYIPDGKGFIVGSIT---------------- 412 (667)
Q Consensus 388 ~~~~~~---------------------------------------v~~v~~spdg~~l~~gs~d---------------- 412 (667)
...... ...+++.++...+++++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 221110 0235677776777777642
Q ss_pred CcEEEEEecCCcceeeeEeecccc----CcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCcce
Q 005956 413 GTCHFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVDVI 474 (667)
Q Consensus 413 g~i~l~d~~~~~~~~~~~~~~~~~----~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~~~ 474 (667)
+.|..+|..+++.... .....+. .....++. +....+|. ..++.++.+|.++++|..+..
T Consensus 272 ~~v~Ald~~tG~~~W~-~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWG-YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TEEEEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEEecCCCcEEEE-ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 2588999988876543 2211110 01112222 22234542 356778889999999976543
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.68 E-value=0.0048 Score=65.96 Aligned_cols=196 Identities=10% Similarity=-0.007 Sum_probs=120.0
Q ss_pred ceEEEEecCC---CeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC---C-eEEEEecCCCe
Q 005956 311 DVLDLAWSNS---NYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID---G-KVRIWGVCEKR 383 (667)
Q Consensus 311 ~V~~l~~s~~---~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D---g-~v~iwdl~~~~ 383 (667)
....|+|.|+ +.|+.+...+.|+.+|..++..............++|.+ +++++++.... . .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4678999984 566666555899999998888777666666789999999 88844443311 1 23333332221
Q ss_pred E-EEecccCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 384 V-VDWADVRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 384 ~-~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
. ............++++| +|..+++-..++.|+.+|..++........... ...-..++|+|+|..++++-..
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-----~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-----KGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-----CSSCEEEEECTTSSEEEEEETT
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-----CCCcccEEEeCCCCEEEEEeCC
Confidence 1 01111234456788999 666665655677899998875544222111111 1223479999997445556666
Q ss_pred CCcEEEEECCc--c----eeeEEeC-C------------CCCCeEEEEE---------cCCCCEEEEEeCCCcEEEEEc
Q 005956 462 DSKLRILDGVD--V----IHKFKGL-P------------KSGSQMSASF---------TTTGKHIISIGDDCRVYVWNY 512 (667)
Q Consensus 462 dg~I~iwd~~~--~----~~~~~~~-~------------~~~~v~~v~~---------spdg~~l~sgs~Dg~I~iWd~ 512 (667)
.+.|+.++... . ...+.+. . .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 78999987531 1 1222221 1 1124567888 677776666666778888875
No 282
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.54 E-value=0.015 Score=64.63 Aligned_cols=147 Identities=15% Similarity=0.102 Sum_probs=90.7
Q ss_pred EEEEeCCCcEEEEecCCCeEeEEeeCCC-----cEEE-EEEeeCCCCEEEEEe------cCCeEEEEecCCCeEEEeccc
Q 005956 323 LLSCSMDKTVRMWQVGCNQCLNVFDHHN-----YVTC-VQFNPIDDNYFISGS------IDGKVRIWGVCEKRVVDWADV 390 (667)
Q Consensus 323 l~s~s~Dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~d~~~l~sgs------~Dg~v~iwdl~~~~~~~~~~~ 390 (667)
++.++.|+.|..+|..+++.+..+.... .+++ ... . ++ .+++++ .++.|+.+|..+++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-V-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-E-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-E-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8889999999999999999887765322 2221 111 1 34 455554 379999999999987632221
Q ss_pred CCce---------------------------------------EEEEEeeCCCEEEEEecCC----------------cE
Q 005956 391 RDVI---------------------------------------SAICYIPDGKGFIVGSITG----------------TC 415 (667)
Q Consensus 391 ~~~v---------------------------------------~~v~~spdg~~l~~gs~dg----------------~i 415 (667)
.... ..+++.+....+++++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 1110 1356777778888887653 78
Q ss_pred EEEEecCCcceeeeEeecccc----CcCCCCeEEEEEc-cCCC--eEEEEEeCCCcEEEEECCcce
Q 005956 416 HFYKASGNDLKLEKVDFHDRK----KTSGNKITGIQFS-RDES--QRIMITSEDSKLRILDGVDVI 474 (667)
Q Consensus 416 ~l~d~~~~~~~~~~~~~~~~~----~~~~~~I~~l~~s-p~g~--~~l~~~s~dg~I~iwd~~~~~ 474 (667)
.-+|..+++.... .....+. .....++. +... .+|. ..++.++.+|.++++|..+..
T Consensus 281 ~Ald~~TG~~~W~-~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 281 FGRDADTGEAKFG-YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp EEEETTTCCEEEE-EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEEeCCCCceeeE-eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 8999998877543 2211110 00112222 2222 3442 467778899999999976543
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.0037 Score=66.80 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=101.3
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecC-C----cEEEEEecCCcc
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSIT-G----TCHFYKASGNDL 425 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~d-g----~i~l~d~~~~~~ 425 (667)
....++++|.++..|+.+...+.|+.+|+.++.+..+.........++++++|+.|+++... + .+.+++.. ...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 45678998621344555555588999999988877666666678999999999966666542 2 23334433 222
Q ss_pred ee-eeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-eEEeCCCCCCeEEEEEcCCCCEEEEEe-
Q 005956 426 KL-EKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-KFKGLPKSGSQMSASFTTTGKHIISIG- 502 (667)
Q Consensus 426 ~~-~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~spdg~~l~sgs- 502 (667)
.. ..+. . ......+++.|+++.++++-..++.|+.++...... .+...........++|+|+|++|+.+.
T Consensus 217 ~~~~~l~--~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 217 KVITELT--K-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp CSEEEEE--E-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eeeeeec--c-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 21 1111 1 134577889994446666666778999999874433 232222334578999999999665554
Q ss_pred CCCcEEEEEcCC
Q 005956 503 DDCRVYVWNYDE 514 (667)
Q Consensus 503 ~Dg~I~iWd~~~ 514 (667)
..+.|+.++.+.
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 567899988764
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.53 E-value=0.092 Score=60.29 Aligned_cols=201 Identities=11% Similarity=-0.021 Sum_probs=123.8
Q ss_pred cccceEEEEecCC-C-eEEEEeCCCcEEEEecCCC----eEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 308 HKGDVLDLAWSNS-N-YLLSCSMDKTVRMWQVGCN----QCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 308 h~~~V~~l~~s~~-~-~l~s~s~Dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
....+..|+|.+. + ++++-...+.|+.+++... .....+. .......|++.+..++++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 3456788999874 4 4445556688999988753 2233333 345667889987445666666677899999998
Q ss_pred CCeEEEec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 381 EKRVVDWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 381 ~~~~~~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
......+. ..-.....|+++|.+..|+.... .+.|...++.+...... + . ........|++.+.++.+++
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-v--~----~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-V--T----ENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-E--C----SSCSCEEEEEEETTTTEEEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE-E--e----CCCCCceEEEEecCCCeEEE
Confidence 76654433 23345889999997666665543 26788888865443211 1 1 11256789999987655555
Q ss_pred EEeCCCcEEEEECCc--ceeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 458 ITSEDSKLRILDGVD--VIHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 458 ~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
+-...+.|..+++.. ................|++. +.+|+.+. ..+.|...+..++..
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence 555667899998753 22222221223345667763 34555554 557788888666643
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.50 E-value=0.019 Score=58.55 Aligned_cols=182 Identities=9% Similarity=-0.078 Sum_probs=113.1
Q ss_pred CCcEEEEecCCCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE--EEecccCCceEEEEEeeCCC
Q 005956 329 DKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV--VDWADVRDVISAICYIPDGK 404 (667)
Q Consensus 329 Dg~I~iWd~~~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~--~~~~~~~~~v~~v~~spdg~ 404 (667)
...|+..++.... ....+.....+..++|.+.++.++++-...+.|..+++.+... ......-..+..+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888987653 2223333346778999984455556656678899999887632 11122224567889987544
Q ss_pred -EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe-CCCcEEEEECCcceeeEEeCCC
Q 005956 405 -GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS-EDSKLRILDGVDVIHKFKGLPK 482 (667)
Q Consensus 405 -~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~ 482 (667)
.+++-...+.|.++++.+..... + .. ........+++.|.++.++++-. ..+.|..+++.-..........
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~--l-~~----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKV--L-FW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEE--E-EC----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred eEEEEECCCCEEEEEECCCCcEEE--E-Ee----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 44555567789999987543321 1 11 11255789999987544444432 3578888887532222212123
Q ss_pred CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 483 SGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 483 ~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
......+++++++..|+.+. ..+.|..++++....
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 45678999999877777664 457899999976443
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.47 E-value=0.03 Score=64.33 Aligned_cols=183 Identities=8% Similarity=-0.071 Sum_probs=118.2
Q ss_pred CCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe----EEE-ecccCCceEEEEEeeC
Q 005956 328 MDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR----VVD-WADVRDVISAICYIPD 402 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~----~~~-~~~~~~~v~~v~~spd 402 (667)
....|+..++..............+..++|.+.++.++++-...+.|+.+++.... ... .......+..|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 34568888888776666666677888999998445555555566889999987631 122 2223455778999987
Q ss_pred CCEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeC
Q 005956 403 GKGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL 480 (667)
Q Consensus 403 g~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 480 (667)
++.|+ +-...+.|.+.++.+..... .+. . .......|++.|.++.++++-... +.|.+.++..........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~-l~~-~-----~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKT-LFR-E-----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEE-EEE-C-----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEE-EEe-C-----CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 75555 44567889999987554322 111 1 124578999999754444443233 688888876433333332
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
........|++++.+..|+.+. ..+.|...+++....
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 2446788999998887777765 456899999876654
No 287
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.46 E-value=0.032 Score=57.73 Aligned_cols=229 Identities=10% Similarity=0.036 Sum_probs=122.4
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEE--ee----CCCcEEEEEEeeCC---CCEEEEEec-C-----Ce
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNV--FD----HHNYVTCVQFNPID---DNYFISGSI-D-----GK 373 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~--~~----h~~~V~~l~f~p~d---~~~l~sgs~-D-----g~ 373 (667)
-.....++|.|+|.|+.+..++.|++++ .++.... +. .......|+|+| + +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 3456799999999767777789999998 4442211 11 235788999999 6 344444433 2 57
Q ss_pred EEEEecCCCe------EEE-ec---ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecCCcc-----
Q 005956 374 VRIWGVCEKR------VVD-WA---DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL----- 425 (667)
Q Consensus 374 v~iwdl~~~~------~~~-~~---~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~~~~----- 425 (667)
|..|+...+. ++. +. ........++|.|||..+++.+. .|.|.-++....-.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888877542 111 11 11123468999999976655332 14555555443100
Q ss_pred ------eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCc--------EEEEECCc---------------ceee
Q 005956 426 ------KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSK--------LRILDGVD---------------VIHK 476 (667)
Q Consensus 426 ------~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~--------I~iwd~~~---------------~~~~ 476 (667)
..+.+ ..+. .....++|.|+++.++++-..... |.+..... ....
T Consensus 187 ~~~~~~~~~i~-a~G~-----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 187 LGRRGARPEVY-SLGH-----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTCTTSCTTEE-EECC-----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred cCCCCCCccEE-EEcC-----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 00011 1111 235678899943344444333222 44433111 0000
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-------ccccccCccceeEEccCCcEEEEecCCCC
Q 005956 477 FKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-------SSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 477 ~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-------~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
.....+......++| .+|.++++.-..+.|...+++..... ...........+.+.|||.+.++.|...+
T Consensus 261 ~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~~~g 337 (352)
T 2ism_A 261 LYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSNRDG 337 (352)
T ss_dssp SEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred eEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeCCCC
Confidence 111112334567777 46766666556677877777644310 01111123445788999988888876544
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.42 E-value=0.056 Score=55.21 Aligned_cols=185 Identities=11% Similarity=0.174 Sum_probs=116.8
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeC---CCCE--EEEEe--c--CCeEEEEec--CCCeEEEecc-
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPI---DDNY--FISGS--I--DGKVRIWGV--CEKRVVDWAD- 389 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~---d~~~--l~sgs--~--Dg~v~iwdl--~~~~~~~~~~- 389 (667)
+++.....+-+.+||+ +++.++.+.. ..+..+..-|. .++. ++.++ . +++|.+|++ .++.+.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 6667777889999999 7888887754 56777776661 1221 33333 3 578999977 4555444321
Q ss_pred -----cC-CceEEEEE--eeC-CC-EEEEEecCCcEEEEEecC---CcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 390 -----VR-DVISAICY--IPD-GK-GFIVGSITGTCHFYKASG---NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 390 -----~~-~~v~~v~~--spd-g~-~l~~gs~dg~i~l~d~~~---~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
.. ..+..+|+ +|. ++ ++++...+|.+..|++.. +....+.+.-. .....+-.+...+.. ..|
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f----~lgsq~EgcvvDd~~-g~L 194 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF----KMNSQTEGMAADDEY-GRL 194 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE----ECSSCEEEEEEETTT-TEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe----cCCCCcceEEEcCCC-CeE
Confidence 11 56777888 664 44 677888899999999853 22222211111 113568888888763 689
Q ss_pred EEEeCCCcEEEEECC-----cceeeEEe-CCC-CCCeEEEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 005956 457 MITSEDSKLRILDGV-----DVIHKFKG-LPK-SGSQMSASF--TTTGK-HIISIG-DDCRVYVWNYD 513 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~-----~~~~~~~~-~~~-~~~v~~v~~--spdg~-~l~sgs-~Dg~I~iWd~~ 513 (667)
+++-++.-|..++.. +....... ..+ ...+..+++ .++++ ||++++ .++...|||..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998778888854 11111111 112 235777777 56666 777766 56799999996
No 289
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.33 E-value=0.0036 Score=70.99 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=121.8
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCCCc-----------E-EEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEe
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNY-----------V-TCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDW 387 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~-----------V-~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~ 387 (667)
++.++.++.++.|.-+|..+++.+..+..... + ..+.+ .+..++.++.|+.|..+|..+++++-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 55788888899999999999999988753211 0 12233 345788888999999999999987743
Q ss_pred cccC-----CceEE-EEEeeCCCEEEEEec------CCcEEEEEecCCcceeeeEeeccccC------------------
Q 005956 388 ADVR-----DVISA-ICYIPDGKGFIVGSI------TGTCHFYKASGNDLKLEKVDFHDRKK------------------ 437 (667)
Q Consensus 388 ~~~~-----~~v~~-v~~spdg~~l~~gs~------dg~i~l~d~~~~~~~~~~~~~~~~~~------------------ 437 (667)
.... ..+.+ ..+ .+..++++.. +|.|..+|..+++.....-.......
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 2221 11111 111 2345666553 58999999998887654211110000
Q ss_pred ------cCCCCeEEEEEccCCCeEEEEEeCCC-------------------cEEEEECCcceeeEEeC--CCC-------
Q 005956 438 ------TSGNKITGIQFSRDESQRIMITSEDS-------------------KLRILDGVDVIHKFKGL--PKS------- 483 (667)
Q Consensus 438 ------~~~~~I~~l~~sp~g~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~--~~~------- 483 (667)
........+++.|++ ..+++++.++ .|..+|..+........ .|.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 001122346788874 5777776665 38899987655544432 121
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 005956 484 GSQMSASFTTTGK---HIISIGDDCRVYVWNYDELCFP 518 (667)
Q Consensus 484 ~~v~~v~~spdg~---~l~sgs~Dg~I~iWd~~~~~~~ 518 (667)
.+.....+..+|+ .|+.++.+|.++++|..+++..
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 2333334444675 7889999999999999999865
No 290
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.26 E-value=0.14 Score=52.85 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=117.2
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcc
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPL 302 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (667)
..-+.|+|.|||+++++ ..+|.|.+++ .+....+. ..+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~--------------------------------------~~~- 68 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYA--------------------------------------ELS- 68 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEE--------------------------------------ECC-
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEee--------------------------------------cce-
Confidence 34679999999996555 5668898887 32111000 000
Q ss_pred eeeeccccceEEEEecCC----CeEEEE-eCC-----CcEEEEecCCCe-----Ee-EEeeC----CCcEEEEEEeeCCC
Q 005956 303 QELHGHKGDVLDLAWSNS----NYLLSC-SMD-----KTVRMWQVGCNQ-----CL-NVFDH----HNYVTCVQFNPIDD 362 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~----~~l~s~-s~D-----g~I~iWd~~~~~-----~~-~~~~h----~~~V~~l~f~p~d~ 362 (667)
.+.........|+|+|+ +.|+.+ ... ..|..|+...+. .+ ..+.. ......++|.| ++
T Consensus 69 -v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG 146 (352)
T 2ism_A 69 -VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DG 146 (352)
T ss_dssp -CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TS
T ss_pred -EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CC
Confidence 11112345788999998 444433 322 568788876542 11 11221 12346899999 88
Q ss_pred CEEEEEec-------------CCeEEEEecCCC-------------eEEEecccCCceEEEEEee-CCCEEEEEecCCcE
Q 005956 363 NYFISGSI-------------DGKVRIWGVCEK-------------RVVDWADVRDVISAICYIP-DGKGFIVGSITGTC 415 (667)
Q Consensus 363 ~~l~sgs~-------------Dg~v~iwdl~~~-------------~~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg~i 415 (667)
.++++.+. .++|.-++.... ....+.........++|+| +|+.+++-.....+
T Consensus 147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~ 226 (352)
T 2ism_A 147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGE 226 (352)
T ss_dssp CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC---
T ss_pred CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCC
Confidence 76666432 256666665531 1001111123366789999 56555443222221
Q ss_pred ------EEEEecCCcce---------------eeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-
Q 005956 416 ------HFYKASGNDLK---------------LEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV- 473 (667)
Q Consensus 416 ------~l~d~~~~~~~---------------~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~- 473 (667)
.|.-+..+..- .....+ ........++|. +| .++++.-..+.|...++...
T Consensus 227 ~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-----~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 227 QGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-----PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGER 299 (352)
T ss_dssp ---CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-----TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEET
T ss_pred CCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-----CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCC
Confidence 23322222100 000000 112345678883 43 55555556677777765421
Q ss_pred -------eeeEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 474 -------IHKFKGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 474 -------~~~~~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
...+.. ....+..+++.|||.+.++..
T Consensus 300 ~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 300 GRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 112211 346789999999997766654
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.25 E-value=0.072 Score=53.93 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=81.8
Q ss_pred eEEEEe---cCCCeEEEEeC--------------CCcEEEEecC---CCeEeEEeeC-------------C-CcEEEEEE
Q 005956 312 VLDLAW---SNSNYLLSCSM--------------DKTVRMWQVG---CNQCLNVFDH-------------H-NYVTCVQF 357 (667)
Q Consensus 312 V~~l~~---s~~~~l~s~s~--------------Dg~I~iWd~~---~~~~~~~~~h-------------~-~~V~~l~f 357 (667)
+..|.| .++++|+.+.. +..|..+|+. +++.+..... . .....++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 478888 57784443322 5779999999 7877766541 1 24789999
Q ss_pred eeCCCCEEEEEecC-CeEEEEecCCCeEEEecc------cCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956 358 NPIDDNYFISGSID-GKVRIWGVCEKRVVDWAD------VRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (667)
Q Consensus 358 ~p~d~~~l~sgs~D-g~v~iwdl~~~~~~~~~~------~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~ 422 (667)
.+ +|+..++++.. +.|..++........+.. .....+.|+++|+|+.|++....|.+..+|+..
T Consensus 145 D~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99 99999999988 888888887664443221 122367899999999999987799999999883
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.16 E-value=0.0012 Score=75.13 Aligned_cols=200 Identities=11% Similarity=-0.042 Sum_probs=117.8
Q ss_pred cceEEEEecCCC-eEEEE-eCCCcEEEEecCC----CeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC
Q 005956 310 GDVLDLAWSNSN-YLLSC-SMDKTVRMWQVGC----NQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK 382 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~-s~Dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~ 382 (667)
..+..|+|.+.+ .|+.+ ...+.|+.+++.+ ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456778898755 55544 4567899999875 22222221 12234567887635566666566788999999876
Q ss_pred eEEEecc-cCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 383 RVVDWAD-VRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 383 ~~~~~~~-~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
....+.. .......++++|.+.+|+.... .+.|..+++....... + .. ........|+|+|+++.++++-
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l-~~----~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L-VT----ENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--E-SC----SSCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--E-Ee----CCCCCccEEEEeccCCEEEEEe
Confidence 6554433 2345778899996655555432 2677777776433221 1 00 0124467899999876666676
Q ss_pred eCCCcEEEEECCcc-eeeEEe-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 460 SEDSKLRILDGVDV-IHKFKG-LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 460 s~dg~I~iwd~~~~-~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
+..+.|.++|+... ...+.. .........+++..+ .++++....+.|..++..++..
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 77789999997532 222211 112233445566443 3444445567899888766654
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.15 E-value=0.0053 Score=69.48 Aligned_cols=225 Identities=10% Similarity=0.079 Sum_probs=117.4
Q ss_pred EEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCc--c-ccCCCCeEEecccC-CC-----CceeecC-CC
Q 005956 225 IWTLKFSPDGRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGF--G-SNAKEGKIKFGKKK-SS-----HVPVVIP-DE 293 (667)
Q Consensus 225 I~~v~fspdg~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~-----~~~~~~~-~~ 293 (667)
..++++.++|++++.||. +..+.+||..+.......-.+..+. . +...++++.+.... .. ...+..+ ..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 345778899999999984 5689999988765444332222221 1 12225555544431 11 1111111 11
Q ss_pred cccccC----CcceeeeccccceEEEEecCCC-eEEEEeCC---------CcEEEEecCCCeEeEEee-CC---------
Q 005956 294 VFQIEE----SPLQELHGHKGDVLDLAWSNSN-YLLSCSMD---------KTVRMWQVGCNQCLNVFD-HH--------- 349 (667)
Q Consensus 294 ~~~~~~----~~~~~l~gh~~~V~~l~~s~~~-~l~s~s~D---------g~I~iWd~~~~~~~~~~~-h~--------- 349 (667)
.|..-. .+...- .+. ..+..++ .++.++.+ ..+..||..+........ +.
T Consensus 325 ~W~~~~~~~~~p~~~~-~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTA-DKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EEEEETTSCSGGGCCC-CTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred cceeCCCccccccccc-ccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 111100 011000 010 1122333 34444444 457788888776444332 11
Q ss_pred CcEEEEEEeeCCCCEEEEEecCC-----------eEEEEecCCCeEEEec--c--cCCceEEEEEeeCCCEEEEEecC--
Q 005956 350 NYVTCVQFNPIDDNYFISGSIDG-----------KVRIWGVCEKRVVDWA--D--VRDVISAICYIPDGKGFIVGSIT-- 412 (667)
Q Consensus 350 ~~V~~l~f~p~d~~~l~sgs~Dg-----------~v~iwdl~~~~~~~~~--~--~~~~v~~v~~spdg~~l~~gs~d-- 412 (667)
..-.++.|...++++++.|+.++ .|.+||..+..-.... . ....-.+++..|+|+.+++|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 12344555444778888887543 6888898887655432 1 12223455667899999998864
Q ss_pred ---------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC
Q 005956 413 ---------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE 461 (667)
Q Consensus 413 ---------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~ 461 (667)
..+.+||..+...... ..............+.|+| ++++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~~-----~~~~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYKQ-----NPNSIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEEC-----CCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceeec-----CCCCCccccccHhhcCCCc-EEEecCCC
Confidence 4689999987654321 1111111223345566775 67777774
No 294
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.13 E-value=0.27 Score=50.62 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=120.0
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCc
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESP 301 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (667)
-..-+.|+|.|||+++++ ..+|.|++++. ++. ..+. ..+
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~--------------------------------------~~~ 66 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVA--------------------------------------SFD 66 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEE--------------------------------------ECC
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEee--------------------------------------ccc
Confidence 345789999999985555 55688888862 211 0000 000
Q ss_pred ceeeeccccceEEEEecCC----CeEEEEeC----C----CcEEEEecCCC-------eEe-EEee--CCCcEEEEEEee
Q 005956 302 LQELHGHKGDVLDLAWSNS----NYLLSCSM----D----KTVRMWQVGCN-------QCL-NVFD--HHNYVTCVQFNP 359 (667)
Q Consensus 302 ~~~l~gh~~~V~~l~~s~~----~~l~s~s~----D----g~I~iWd~~~~-------~~~-~~~~--h~~~V~~l~f~p 359 (667)
.+.........|+++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......++|.|
T Consensus 67 --v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p 144 (354)
T 3a9g_A 67 --VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP 144 (354)
T ss_dssp --CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT
T ss_pred --eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC
Confidence 01112345788999997 54443332 3 56777777654 111 1122 112346789999
Q ss_pred CCCCEEEEEec-------------CCeEEEEecCCC--------e-EEEecccCCceEEEEEee-CCCEEEEEecCC---
Q 005956 360 IDDNYFISGSI-------------DGKVRIWGVCEK--------R-VVDWADVRDVISAICYIP-DGKGFIVGSITG--- 413 (667)
Q Consensus 360 ~d~~~l~sgs~-------------Dg~v~iwdl~~~--------~-~~~~~~~~~~v~~v~~sp-dg~~l~~gs~dg--- 413 (667)
++.++++.+. .|+|.-++.... . .+....+ .....++|+| +|+.+++-....
T Consensus 145 -DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~d 222 (354)
T 3a9g_A 145 -DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHD 222 (354)
T ss_dssp -TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCC
T ss_pred -CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCc
Confidence 8877766432 245666665432 0 1111222 3356799999 566555432221
Q ss_pred cEEEEEecCCcc---------------eeeeEeeccccCcCCCCeEEEEEc-------cCCCeEEEEEeCCCcEEEEECC
Q 005956 414 TCHFYKASGNDL---------------KLEKVDFHDRKKTSGNKITGIQFS-------RDESQRIMITSEDSKLRILDGV 471 (667)
Q Consensus 414 ~i~l~d~~~~~~---------------~~~~~~~~~~~~~~~~~I~~l~~s-------p~g~~~l~~~s~dg~I~iwd~~ 471 (667)
.|.+. ..+.. ......+ .........+.|. .+| .++++.-..+.|...++.
T Consensus 223 ei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~----~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 223 EVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT----GSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp EEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC----TTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEEC
T ss_pred EEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec----CCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEEC
Confidence 13322 21110 0000011 0112457888884 344 566666667788888866
Q ss_pred cc--ee-eEEeC-CCCCCeEEEEEcCCCCEEEEEe
Q 005956 472 DV--IH-KFKGL-PKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 472 ~~--~~-~~~~~-~~~~~v~~v~~spdg~~l~sgs 502 (667)
.. .. ..... .....+..+++.|||.+.++..
T Consensus 296 ~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 296 DNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 31 21 11221 1246788999999997666654
No 295
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.11 E-value=0.19 Score=51.81 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=123.9
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCe-EeEEee----CCCcEEEEEEeeCC---CCEEEEEec----C----C
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQ-CLNVFD----HHNYVTCVQFNPID---DNYFISGSI----D----G 372 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~-~~~~~~----h~~~V~~l~f~p~d---~~~l~sgs~----D----g 372 (667)
-.....|+|.|++.|+.+..++.|++++. .++ .+..+. .......|+|+| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 34578899999997777788899999973 444 222211 234688999999 5 344444433 3 5
Q ss_pred eEEEEecCCC-------eE-EE-ec-ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecCCcc----
Q 005956 373 KVRIWGVCEK-------RV-VD-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASGNDL---- 425 (667)
Q Consensus 373 ~v~iwdl~~~-------~~-~~-~~-~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~~~~---- 425 (667)
.|..|+.... +. +. +. ........++|.|||.++++.+. .|.|.-++....-.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877654 11 11 11 11123567999999986665332 23455454432100
Q ss_pred --eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC---cEEEEECCc---------------cee-eEEeCCCCC
Q 005956 426 --KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS---KLRILDGVD---------------VIH-KFKGLPKSG 484 (667)
Q Consensus 426 --~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg---~I~iwd~~~---------------~~~-~~~~~~~~~ 484 (667)
..+.+ ..+. .....++|.|+.+.++++-.... .|.+..... ... .+.......
T Consensus 186 f~~~~i~-a~G~-----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 186 FPNSPIW-SYGH-----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp STTCCEE-EECC-----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCcEE-EEcc-----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 00111 1111 23568999994334444332221 244433111 000 111101234
Q ss_pred CeEEEEEc-------CCCCEEEEEeCCCcEEEEEcCCC-Cc----cccccccCccceeEEccCCcEEEEecCC
Q 005956 485 SQMSASFT-------TTGKHIISIGDDCRVYVWNYDEL-CF----PSSKQKNSVRSCEHFFSEGVSVAVQWPG 545 (667)
Q Consensus 485 ~v~~v~~s-------pdg~~l~sgs~Dg~I~iWd~~~~-~~----~~~~~~~~~~~~~~fs~dg~~lav~w~~ 545 (667)
....++|. .+|.++++.-..+.|...+++.. .. ............+.+.|||.+.++.|..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~~ 332 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSNR 332 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECTT
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeCC
Confidence 57788883 56777777666778888888753 21 1111112234457889999888887753
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.049 Score=58.71 Aligned_cols=154 Identities=11% Similarity=0.050 Sum_probs=95.6
Q ss_pred ceEEEEecCC-C-eEEEEeC-CCcEEEEecCCCeEeEEeeC----CCcEEEEEE-------eeCCCCEEEEEecCC----
Q 005956 311 DVLDLAWSNS-N-YLLSCSM-DKTVRMWQVGCNQCLNVFDH----HNYVTCVQF-------NPIDDNYFISGSIDG---- 372 (667)
Q Consensus 311 ~V~~l~~s~~-~-~l~s~s~-Dg~I~iWd~~~~~~~~~~~h----~~~V~~l~f-------~p~d~~~l~sgs~Dg---- 372 (667)
....|+|.|. + .|+.+.. .+.|++.|+.++........ ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 4568899983 3 5554444 46799999998877766542 235899999 99 888666666554
Q ss_pred ---eEEEEecCC-CeEE-----EecccCCceEEEEEeeC-CCEEEEEecCCcEEEEEec-------CCcc------e---
Q 005956 373 ---KVRIWGVCE-KRVV-----DWADVRDVISAICYIPD-GKGFIVGSITGTCHFYKAS-------GNDL------K--- 426 (667)
Q Consensus 373 ---~v~iwdl~~-~~~~-----~~~~~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~-------~~~~------~--- 426 (667)
.|.+++... +... ...........++++|+ +.++++-..++.|..+|+. +... .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665333 2221 11111234567889995 5555556677889999997 4443 0
Q ss_pred -eee-EeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 427 -LEK-VDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 427 -~~~-~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
... .... .......|+|+|+|..++++-.....|+.++.
T Consensus 299 ~~~~l~~~~-----~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIA-----DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECS-----SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEecC-----CCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 111 1111 12446799999997434555566778998653
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.09 E-value=0.081 Score=54.02 Aligned_cols=141 Identities=13% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCcEEEEecC--CCeEeEEeeC-------C-CcEEEEEE--eeCCCC-EEEEEecCCeEEEEecC-------CCeEEEec
Q 005956 329 DKTVRMWQVG--CNQCLNVFDH-------H-NYVTCVQF--NPIDDN-YFISGSIDGKVRIWGVC-------EKRVVDWA 388 (667)
Q Consensus 329 Dg~I~iWd~~--~~~~~~~~~h-------~-~~V~~l~f--~p~d~~-~l~sgs~Dg~v~iwdl~-------~~~~~~~~ 388 (667)
+.+|.+|++. ++. +..+.. . ..+..+++ +|..+. ++++...+|.+..|++. +.+++...
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 5799999773 443 444421 1 45666777 663443 67888889999999883 33556666
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc-eeeeEeeccccCcCCCCeEEEEE--ccCCCeEEEEEe-CCCc
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL-KLEKVDFHDRKKTSGNKITGIQF--SRDESQRIMITS-EDSK 464 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~-~~~~~~~~~~~~~~~~~I~~l~~--sp~g~~~l~~~s-~dg~ 464 (667)
.....+..+.+.+....|+++-.+.-|..|+.....- ....+.... ...-...+..|++ .+++..+|++++ .++.
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 6677899999999888999999987776677542221 111121111 1111235788887 455544666666 5679
Q ss_pred EEEEECC
Q 005956 465 LRILDGV 471 (667)
Q Consensus 465 I~iwd~~ 471 (667)
+.+||..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999975
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.07 E-value=0.46 Score=53.05 Aligned_cols=195 Identities=7% Similarity=-0.025 Sum_probs=125.1
Q ss_pred cceEEEEecCCC-e-EEEEeCCCcEEEEecCCCeEeEEeeC-CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEE
Q 005956 310 GDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCNQCLNVFDH-HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVD 386 (667)
Q Consensus 310 ~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~ 386 (667)
..+..|+|++.+ . +.+-..++.|+.+++........+.. ......+++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457889999855 4 44556678999999876544444432 24567888887456666666667889999987654332
Q ss_pred ec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 387 WA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 387 ~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
+. ..-.....+++.|....|..... .+.|...++.+...... + . .......|++.+++..++++-...+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l-~--~-----~~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-V--P-----NVGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--C-----SCSSEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE-E--C-----CCCCcceEEEccccCEEEEEECCCC
Confidence 22 33456789999996556655542 46777777765443221 1 1 1356789999998656666666778
Q ss_pred cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCC
Q 005956 464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELC 516 (667)
Q Consensus 464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~ 516 (667)
.|..+|+... ...+.. .......+++.. + +|+.+ ...+.|...|..++.
T Consensus 189 ~I~~~d~dG~~~~v~~~--~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 189 LIESSNMLGLNREVIAD--DLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTSCSCEEEEE--CCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCceEEeec--cCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence 9999997532 222322 334556777754 3 45444 456888888876654
No 299
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.97 E-value=0.29 Score=50.42 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCeEEEEEccCC------CeEEEEEeCCCcEEEEECCcc--eeeEEeC-CCCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 005956 441 NKITGIQFSRDE------SQRIMITSEDSKLRILDGVDV--IHKFKGL-PKSGSQMSASFTTTGKHIISIG-DDCRV 507 (667)
Q Consensus 441 ~~I~~l~~sp~g------~~~l~~~s~dg~I~iwd~~~~--~~~~~~~-~~~~~v~~v~~spdg~~l~sgs-~Dg~I 507 (667)
.....+.|...+ +.++++.-..+.|...++... ....... .....+..+++.|||.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 356778886421 356666666777777775432 1111111 1235789999999998666543 34433
No 300
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.96 E-value=0.022 Score=63.28 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=53.4
Q ss_pred CCeEEEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc
Q 005956 371 DGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 371 Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
+|.|..||+.+++++-.......+..-.....+..+++|+.||.++.||.++++...+ ..... ...-.-+.|..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~-~~~~~-----g~~a~P~~y~~ 538 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK-FQTGS-----GIVSPPITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE-EECSS-----CCCSCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE-ecCCC-----CcccCceEEEE
Confidence 5789999999998774333332332222234567888899999999999999887654 22211 11112355667
Q ss_pred CCCeEEEEEeC
Q 005956 451 DESQRIMITSE 461 (667)
Q Consensus 451 ~g~~~l~~~s~ 461 (667)
+|..++++.+.
T Consensus 539 ~G~qYv~~~~G 549 (582)
T 1flg_A 539 DGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEcc
Confidence 77566666554
No 301
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.95 E-value=0.31 Score=50.17 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=110.2
Q ss_pred cceEEEEecCCCeEEEEe-------------CCCcEEEEecCC--CeE--eEEee-----CCCcEEEEEEeeC-CCC-EE
Q 005956 310 GDVLDLAWSNSNYLLSCS-------------MDKTVRMWQVGC--NQC--LNVFD-----HHNYVTCVQFNPI-DDN-YF 365 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s-------------~Dg~I~iWd~~~--~~~--~~~~~-----h~~~V~~l~f~p~-d~~-~l 365 (667)
....++...++|.+++++ .+|.|.++|..+ .+. +.... ..-....+.+.+. ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345567778888656554 689999999873 232 22211 1236778888762 233 34
Q ss_pred EEE-ec--CCeEEEEecCC--CeEEEe---c-ccCCceEEEEEeeCCCEEEEEec---C------------CcEEEEEec
Q 005956 366 ISG-SI--DGKVRIWGVCE--KRVVDW---A-DVRDVISAICYIPDGKGFIVGSI---T------------GTCHFYKAS 421 (667)
Q Consensus 366 ~sg-s~--Dg~v~iwdl~~--~~~~~~---~-~~~~~v~~v~~spdg~~l~~gs~---d------------g~i~l~d~~ 421 (667)
+.+ .. +.+|.+|++.. +..... . ..-...+.+.+.++|.++++... + ..-.+|.+.
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 45677877654 332221 1 12345889999999987776541 1 223344443
Q ss_pred CCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc---c--eeeEEeCCCCCCeEEEEEcC-CC
Q 005956 422 GNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD---V--IHKFKGLPKSGSQMSASFTT-TG 495 (667)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~---~--~~~~~~~~~~~~v~~v~~sp-dg 495 (667)
..+... ...+ -..-+.++|+||+..++++-+..+.|+.|++.. . ...+ . ..+..-.+++.+ +|
T Consensus 210 ~~~~~~---~~~~-----l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 210 PNDVRV---VAEG-----FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--FDTLVDNISVDPVTG 278 (355)
T ss_dssp TTCCEE---EEEE-----ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--CSSEEEEEEECTTTC
T ss_pred CCeEEE---eecC-----CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--CCCCCceEEEeCCCC
Confidence 332211 1111 145689999999855666666788999999642 1 1222 1 245677888988 58
Q ss_pred CEEEEEeCC-CcEEEEE
Q 005956 496 KHIISIGDD-CRVYVWN 511 (667)
Q Consensus 496 ~~l~sgs~D-g~I~iWd 511 (667)
++.+++..+ +.|..|+
T Consensus 279 ~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CEEEEEESCHHHHHSCC
T ss_pred cEEEEecCCceEEEEEC
Confidence 877766544 3444444
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.90 E-value=0.063 Score=56.06 Aligned_cols=148 Identities=11% Similarity=0.185 Sum_probs=93.6
Q ss_pred CCCEEEEEecCCeEEEEecCCCeE---EEecc--cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcc----------
Q 005956 361 DDNYFISGSIDGKVRIWGVCEKRV---VDWAD--VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDL---------- 425 (667)
Q Consensus 361 d~~~l~sgs~Dg~v~iwdl~~~~~---~~~~~--~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~---------- 425 (667)
++..++.+- ++.||.-++..+.. +.... .-+.|..+..+|+|++||+.+.. .|.|..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence 455555443 46777777764332 22221 12357889999999999998654 888888873221
Q ss_pred -eeeeEeeccccCcCCCCeEEEEEccCCC--eEEEEEeCCCcEEEEECCc----ce------eeEEeCCCCCCeEEEEEc
Q 005956 426 -KLEKVDFHDRKKTSGNKITGIQFSRDES--QRIMITSEDSKLRILDGVD----VI------HKFKGLPKSGSQMSASFT 492 (667)
Q Consensus 426 -~~~~~~~~~~~~~~~~~I~~l~~sp~g~--~~l~~~s~dg~I~iwd~~~----~~------~~~~~~~~~~~v~~v~~s 492 (667)
....+.+.........+|..+.|+|-+. ..|++-..|+.|++||+.. +. ..+........|.+++|+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 1112222221111357899999999753 4899999999999999764 11 111111223678899999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 005956 493 TTGKHIISIG--DDCRVYVW 510 (667)
Q Consensus 493 pdg~~l~sgs--~Dg~I~iW 510 (667)
.++-.|+..+ +.|.||-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777755 77887754
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.89 E-value=0.23 Score=55.47 Aligned_cols=199 Identities=7% Similarity=-0.061 Sum_probs=117.9
Q ss_pred cceEEEEecCCC-eEE-EEeCCCcEEEEecCCCeE-eEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEE
Q 005956 310 GDVLDLAWSNSN-YLL-SCSMDKTVRMWQVGCNQC-LNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVV 385 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~-s~s~Dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~ 385 (667)
..+..|+|++.+ .|+ +-...+.|..+++..... ...+. .-.....+++.+.+++++++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456789998755 554 444567888888876532 22333 23578899999845555666566789999999876543
Q ss_pred Eec-ccCCceEEEEEeeCCCEEEEEec--CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 386 DWA-DVRDVISAICYIPDGKGFIVGSI--TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 386 ~~~-~~~~~v~~v~~spdg~~l~~gs~--dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.+. ..-.....+++.|.+..|..... .+.|...++.+...... + . ........|++.++++.++++-...
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~--~----~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-I--N----SEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E--C----SSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-E--e----CCCCCCcEEEEEccCCEEEEEeCCC
Confidence 322 33455788999997666655543 35666666654333211 1 1 1125678999999765666666677
Q ss_pred CcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCc
Q 005956 463 SKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISI-GDDCRVYVWNYDELCF 517 (667)
Q Consensus 463 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~Dg~I~iWd~~~~~~ 517 (667)
+.|..+|+..................+++..+ .|+.+ ...+.|...|..+++.
T Consensus 193 ~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred CeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 88999987532221111111223346676554 55544 3567888888877653
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.88 E-value=0.45 Score=47.87 Aligned_cols=236 Identities=13% Similarity=0.161 Sum_probs=145.9
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeecc
Q 005956 229 KFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGH 308 (667)
Q Consensus 229 ~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh 308 (667)
-.+|..+.||--. ..++.|+|+++. ..+..+.-
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK---------------------------------------------~klks~~~- 105 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMK---------------------------------------------SKMKAHTM- 105 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTT---------------------------------------------EEEEEEEC-
T ss_pred eeCCCccEEEEec-CCeEEEechHHh---------------------------------------------hhhcceec-
Confidence 3478888777765 578999999862 11222222
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-----CCCcEEEEEEeeCCCCEEEEEec-------CCeEE
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKVR 375 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~-------Dg~v~ 375 (667)
...|.--.|-.+..|+-.+. ..|.-|+++. ..+.+.|. ....|.....++ +.+.++..+. .|.+.
T Consensus 106 ~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 106 TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp SSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEE
T ss_pred CCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEE
Confidence 35677778877665554443 4799999974 46677775 234677777777 6776655442 37788
Q ss_pred EEecCCCeEEEecccCCceEEEEEeeCC-----CEEEEEec---CCcEEEEEecCC-----cceeeeEeeccccCcCCCC
Q 005956 376 IWGVCEKRVVDWADVRDVISAICYIPDG-----KGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 376 iwdl~~~~~~~~~~~~~~v~~v~~spdg-----~~l~~gs~---dg~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~~ 442 (667)
+|..+.+....+.+|......+. .+| +.++.+.. .+.+++.++... ....+...+.-.......-
T Consensus 184 LYS~er~~sQ~ieGhaa~F~~~~--~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DF 261 (365)
T 2xzh_A 184 LYSVDRKVSQPIEGHAASFAQFK--MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 261 (365)
T ss_dssp EEETTTTEEEEECCSEEEEEEEC--CTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCC
T ss_pred EEeecccccceeeeeeeeeEEEe--cCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCc
Confidence 99988877666666544332222 222 23333333 258899988543 1111122222222233455
Q ss_pred eEEEEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 443 ITGIQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
-.+++.++. ...++.-+.-|.|++||+.+....|...-....|...+-.....=++.....|.|.--.++...
T Consensus 262 PVamqvs~k-ygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 262 PVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred eEEEEeccc-CCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 667788776 3688888999999999999888877765556666655554444445555577777666666544
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.86 E-value=0.43 Score=53.27 Aligned_cols=186 Identities=11% Similarity=0.041 Sum_probs=119.1
Q ss_pred CeEEEEeCCCcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc-CCceEEE
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-RDVISAI 397 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~-~~~v~~v 397 (667)
.+|+.+ ....|+..++.+......+. .-..+..++|++.++.++++-..++.|..+++........... ...+..+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 334433 45678999998765444333 3357889999994555555556678999999887654433322 2457789
Q ss_pred EEeeCCCEE-EEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe--CCCcEEEEECCcc-
Q 005956 398 CYIPDGKGF-IVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS--EDSKLRILDGVDV- 473 (667)
Q Consensus 398 ~~spdg~~l-~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s--~dg~I~iwd~~~~- 473 (667)
++.+.+..| ++-...+.|.+.++.+...... + . ........|++.|.++ .|+.+. ..+.|...++...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-~--~----~~l~~P~~iavdp~~G-~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-V--W----KDLDSPRALALDPAEG-FMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEE-E--C----SSCCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-E--e----CCCCCcccEEEccCCC-eEEEeCCCCCCEEEEEeCCCCc
Confidence 998765555 4445567899999876543211 1 1 1124568999998643 444444 3567888876522
Q ss_pred eeeEEeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 474 IHKFKGLPKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 474 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
...+. ........++++++++.|+.+. ..+.|...+++....
T Consensus 158 ~~~l~--~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 158 RTTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp CEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eEEEE--CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 22222 2456788999999887777765 457899999977544
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.73 E-value=0.73 Score=48.21 Aligned_cols=205 Identities=12% Similarity=0.134 Sum_probs=130.0
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-----CCCcEEEEEEeeCCCCEEEEEec-------CCeEEE
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSI-------DGKVRI 376 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~-------Dg~v~i 376 (667)
..|.--.|-.+..|+-.+. ..|.-|++.. ..+.+.|. ....|.....++ +.+.++..+. .|.+.+
T Consensus 106 e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 106 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp SCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEE
Confidence 4576777766665544443 5799999974 45677775 234677777777 7777665442 477889
Q ss_pred EecCCCeEEEecccCCceEEEEEeeC---CCEEEEEec---CCcEEEEEecCC-----cceeeeEeeccccCcCCCCeEE
Q 005956 377 WGVCEKRVVDWADVRDVISAICYIPD---GKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 377 wdl~~~~~~~~~~~~~~v~~v~~spd---g~~l~~gs~---dg~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
|..+.+....+.+|-.....+.+.-+ .+.++.+.. .+.+++.++... ........+.-.......--.+
T Consensus 184 YS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 184 YSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp EESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred eeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 99988776666666544433322111 123444443 278999998543 1112222222222233455667
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCF 517 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~ 517 (667)
++.++. ...++.-+.-|.|++||+.+....|...-...+|...+-.....=++.....|.|.--.++....
T Consensus 264 mqvs~k-ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 264 MQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EEeccc-CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 888876 36888899999999999998888887765666776666655555566666788887777766543
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.71 E-value=0.6 Score=46.97 Aligned_cols=191 Identities=12% Similarity=0.118 Sum_probs=118.8
Q ss_pred cCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEeccc-----
Q 005956 318 SNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWADV----- 390 (667)
Q Consensus 318 s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~~----- 390 (667)
+|.. .++--. ..++.|+|+++.+.++.+.....|.--.|- +.+.|+..+ +..|+-|++... .+++....
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcc
Confidence 6655 333333 678999999999999999988899888887 456666655 567999999752 33332221
Q ss_pred CCceEEEEEeeCCCEEEEEec-------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc--cCCCeEEEEEeC
Q 005956 391 RDVISAICYIPDGKGFIVGSI-------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITSE 461 (667)
Q Consensus 391 ~~~v~~v~~spdg~~l~~gs~-------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s--p~g~~~l~~~s~ 461 (667)
...|..-..+++.++++..+- .|.+.+|..+.+..+. +.++ ......+.+. +....+++.+..
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE----ECCS----EEEEEEECCTTCSSCEEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce----eeee----eeeeEEEecCCCCCCceEEEEEEe
Confidence 345777777888898877542 3678899887544322 1111 0111111111 111122222222
Q ss_pred ---CCcEEEEECCcc---eeeE-----Ee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 462 ---DSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 462 ---dg~I~iwd~~~~---~~~~-----~~----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
.++++|.++... ...| .. ........++..|+.-..|+.-..-|.|++||++++.+...
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 258888886422 1111 11 11245567888888888999999999999999999986443
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.70 E-value=0.57 Score=49.01 Aligned_cols=192 Identities=11% Similarity=0.113 Sum_probs=120.2
Q ss_pred ecCCC-eEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEeccc----
Q 005956 317 WSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWADV---- 390 (667)
Q Consensus 317 ~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~~---- 390 (667)
.+|.. .++--. ..++.|+|+++...++.+.....|.--.|-. .+.|+..+ +..|+-|++... .+++..+.
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhc
Confidence 35555 333333 6799999999999999999888888888875 55665554 568999999753 33332221
Q ss_pred -CCceEEEEEeeCCCEEEEEe-------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEcc--CCCeEEEEEe
Q 005956 391 -RDVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSR--DESQRIMITS 460 (667)
Q Consensus 391 -~~~v~~v~~spdg~~l~~gs-------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp--~g~~~l~~~s 460 (667)
...|..-..+++.++++..+ -.|.+.+|....+..+. +.++ ......+.... .....+..+.
T Consensus 149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~----ieGh----aa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----ECCS----EEEEEEEECTTCSSEEEEEEEEE
T ss_pred ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----heee----eeeeEEEecCCCCCCceEEEEEE
Confidence 34577777788999887644 24678899887554332 1111 11111222111 1012233333
Q ss_pred C---CCcEEEEECCcc---eeeE-----Ee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 461 E---DSKLRILDGVDV---IHKF-----KG----LPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 461 ~---dg~I~iwd~~~~---~~~~-----~~----~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
. .+.++|.++... ...| .. ........++..|+.-..|+.-..-|.|++||++++.+...
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 2 368888886432 1111 10 11245567888999989999999999999999999976443
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.69 E-value=0.0042 Score=70.75 Aligned_cols=180 Identities=8% Similarity=-0.082 Sum_probs=106.4
Q ss_pred CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEE-ecCCeEEEEecCC----CeEEEec-ccCCceEEEEEeeC
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISG-SIDGKVRIWGVCE----KRVVDWA-DVRDVISAICYIPD 402 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sg-s~Dg~v~iwdl~~----~~~~~~~-~~~~~v~~v~~spd 402 (667)
.+.|+..++.+......+.....+..++|.+ .+..|+.+ ...+.|+.+++.+ ....... .....+..|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888888776665555555677899998 55555544 4567899999875 2222222 12234567888865
Q ss_pred CC-EEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcceeeEEeC
Q 005956 403 GK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVIHKFKGL 480 (667)
Q Consensus 403 g~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 480 (667)
+. ++++-...+.|.++++.+...... + .. .......|++.|.++.++++-... +.|.++++..........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l-~--~~----~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTL-F--RE----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEE-C--CC----SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEE-E--eC----CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 44 444445567899998875433211 1 10 113456788998754444443233 688887765322221111
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCC
Q 005956 481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELC 516 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~ 516 (667)
........|+|+|++..|+.+. ..+.|.+++++...
T Consensus 537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC
T ss_pred CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc
Confidence 1334567899999876665554 56789999997643
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.65 E-value=0.38 Score=53.62 Aligned_cols=182 Identities=8% Similarity=-0.095 Sum_probs=107.3
Q ss_pred CCCcEEEEecCCCe--EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-E-EecccCCceEEEEEeeCC
Q 005956 328 MDKTVRMWQVGCNQ--CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-V-DWADVRDVISAICYIPDG 403 (667)
Q Consensus 328 ~Dg~I~iWd~~~~~--~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~-~~~~~~~~v~~v~~spdg 403 (667)
....|+..++.... .......-..+..++|++.++.++++-...+.|..+++..... . .....-..+..+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 34678888887643 3333345567889999994444444444567899999876532 1 222223568899999965
Q ss_pred CEEE-EEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--CCcEEEEECCcceeeEEeC
Q 005956 404 KGFI-VGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE--DSKLRILDGVDVIHKFKGL 480 (667)
Q Consensus 404 ~~l~-~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~--dg~I~iwd~~~~~~~~~~~ 480 (667)
..|+ +-...+.|.+.++.+...... + . ........|++.|.++ .|+.+.. .+.|...++.-........
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l-~--~----~~l~~P~~Iavdp~~g-~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 167 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVL-F--W----QELDQPRAIALDPSSG-FMYWTDWGEVPKIERAGMDGSSRFIIIN 167 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE-E--C----SSCSCCCCEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEE-E--e----CCCCCCceEEEecCCC-eEEEeccCCCCEEEEEECCCCceEEEEe
Confidence 5554 445678999999986543221 1 1 1124467899998753 4444442 4577777755222211221
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 005956 481 PKSGSQMSASFTTTGKHIISIG-DDCRVYVWNYDELCF 517 (667)
Q Consensus 481 ~~~~~v~~v~~spdg~~l~sgs-~Dg~I~iWd~~~~~~ 517 (667)
........++++++++.|+.+. ..+.|...+++....
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc
Confidence 2455678999999877777664 456899998876543
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.57 E-value=0.78 Score=46.47 Aligned_cols=217 Identities=8% Similarity=0.010 Sum_probs=113.5
Q ss_pred ccceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe
Q 005956 309 KGDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR 383 (667)
Q Consensus 309 ~~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~ 383 (667)
...+.+|.|.+.+.++.++.++.| +...+.++.-.... ....+..+.|.+ +..++ ++..+.|.. ....++
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-ECCCCC
Confidence 346899999876633335667765 33344443322221 244788999975 34444 455665544 333343
Q ss_pred EEEe-c---ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 384 VVDW-A---DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 384 ~~~~-~---~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.-.. . .....+..+.+.+++..++++ .+|.+ |...+.......+.. .....+..+.+.+++ .+++++
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~-----~~~~~~~~~~~~~~~-~~~~~g 180 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQ-----EAIGVMRNLNRSPSG-EYVAVS 180 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEEC-----SCCCCEEEEEECTTS-CEEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeec-----CCCcceEEEEEcCCC-cEEEEE
Confidence 2221 1 123457788887777666555 45543 333332222222211 112568899999985 555554
Q ss_pred eCCCcEEE-EEC-CcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccccc-----ccCccceeEE
Q 005956 460 SEDSKLRI-LDG-VDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSSKQ-----KNSVRSCEHF 532 (667)
Q Consensus 460 s~dg~I~i-wd~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~~~-----~~~~~~~~~f 532 (667)
.++.++. .|. ...-.... ......+..+.+++++..++. +.+|.+++++.+.+..-.... .......+.|
T Consensus 181 -~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 181 -SRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp -TTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred -CCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 4455444 453 22222222 224567889999999876654 567888877533232111111 1111234456
Q ss_pred ccCCcEEEEe
Q 005956 533 FSEGVSVAVQ 542 (667)
Q Consensus 533 s~dg~~lav~ 542 (667)
.+++.++++.
T Consensus 258 ~~~~~~~~~g 267 (327)
T 2xbg_A 258 RTPNEVWLAG 267 (327)
T ss_dssp SSSSCEEEEE
T ss_pred cCCCEEEEEe
Confidence 6666666664
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.52 E-value=0.038 Score=52.41 Aligned_cols=178 Identities=8% Similarity=-0.025 Sum_probs=99.5
Q ss_pred eEEEEeCCCcEEEEecCCCe------EeEEeeC--CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956 322 YLLSCSMDKTVRMWQVGCNQ------CLNVFDH--HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~------~~~~~~h--~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~ 393 (667)
+|+....| +|+.=....+. ....+.. -..+..++|+| ++.+.++ .+|.++-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 55544443332 2334443 24777999999 8886666 778887777755333322222222
Q ss_pred --------eEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeecccc--CcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 394 --------ISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK--KTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 394 --------v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~--~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
..++.|.|+|.+.++ .||.|.-++-.+...... .....+ ...-..+..|.|.|+| . |.+.. |+
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~W--l~~a~~vg~~gw~~~~~lff~p~G-~-Lyav~-dg 154 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNW--IARATEVGSGGWSGFKFLFFHPNG-Y-LYAVH-GQ 154 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCH--HHHSEEEECSSGGGEEEEEECTTS-C-EEEEE-TT
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCce--eccccEeccCCCCceEEEEECCCc-e-EEEEe-CC
Confidence 478999999988888 669887776533222111 000000 0001467999999997 4 44444 77
Q ss_pred cEEEEECC-cc------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 464 KLRILDGV-DV------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 464 ~I~iwd~~-~~------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.++-.... .. .....+.........+.|+++|...++. ++ ++|....
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 75443221 00 1122222233445567799998877666 67 4454433
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.50 E-value=0.2 Score=50.05 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=94.2
Q ss_pred eEEEEeCC-----CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC-----eEEEEecCCCeEEEecc
Q 005956 322 YLLSCSMD-----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG-----KVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 322 ~l~s~s~D-----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg-----~v~iwdl~~~~~~~~~~ 389 (667)
.++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 141 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP 141 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC
Confidence 55666644 358889998876544332 11111122222 677888887653 58889998877554332
Q ss_pred cCCc--eEEEEEeeCCCEEEEEecC-------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 390 VRDV--ISAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 390 ~~~~--v~~v~~spdg~~l~~gs~d-------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
.... -.+++. -+++.++.|+.+ ..+.+||+.++...... .+. ........+.+ + ..+++.|+
T Consensus 142 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG 212 (302)
T 2xn4_A 142 MNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA-EMS----TRRSGAGVGVL--N-NLLYAVGG 212 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECC
T ss_pred CCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC-CCc----cccccccEEEE--C-CEEEEECC
Confidence 2111 112222 367777777653 35888998876554321 111 11111222222 3 36777776
Q ss_pred CC-----CcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005956 461 ED-----SKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDEL 515 (667)
Q Consensus 461 ~d-----g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~ 515 (667)
.+ ..+.+||..+..-. .........-..++. .+++.++.|+.++ .|.+||..+.
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 54 46889997643221 111111111111222 3567777777553 3677777654
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.45 E-value=0.17 Score=50.48 Aligned_cols=182 Identities=10% Similarity=0.057 Sum_probs=94.6
Q ss_pred eEEEEeCC-----CcEEEEecCCCe---EeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEE
Q 005956 322 YLLSCSMD-----KTVRMWQVGCNQ---CLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVD 386 (667)
Q Consensus 322 ~l~s~s~D-----g~I~iWd~~~~~---~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~ 386 (667)
.++.|+.+ ..+.+||..+++ -...-. ....-.++... ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 56666654 468899988766 333321 11111122222 57777777754 368899998877544
Q ss_pred ecccCCc-eEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 387 WADVRDV-ISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 387 ~~~~~~~-v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
....... ....+..-+++.++.|+.+ ..+.+||+.+....... .+. ........+.+ + ..+++.|+
T Consensus 143 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~i~v~GG 214 (301)
T 2vpj_A 143 LGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMA----TKRSGAGVALL--N-DHIYVVGG 214 (301)
T ss_dssp EEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECC
T ss_pred CCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC-CCC----cccccceEEEE--C-CEEEEEeC
Confidence 3221111 1111222367778887754 46889998877554321 111 11111222222 3 36777776
Q ss_pred CC-----CcEEEEECCcceee-EEeCCCC-CCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956 461 ED-----SKLRILDGVDVIHK-FKGLPKS-GSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 515 (667)
Q Consensus 461 ~d-----g~I~iwd~~~~~~~-~~~~~~~-~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~ 515 (667)
.+ ..+.+||..+..-. ....... .....+. .+++.++.|+.+ ..|.+||..+.
T Consensus 215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 54 46899998743222 1111111 1112222 266777777655 35777777664
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.41 E-value=0.31 Score=50.14 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=96.0
Q ss_pred cCCeEEEEecCC--CeEEE--ecc-----cCCceEEEEEee--CCC-EEEEEe-c--CCcEEEEEecCCcceeeeE-eec
Q 005956 370 IDGKVRIWGVCE--KRVVD--WAD-----VRDVISAICYIP--DGK-GFIVGS-I--TGTCHFYKASGNDLKLEKV-DFH 433 (667)
Q Consensus 370 ~Dg~v~iwdl~~--~~~~~--~~~-----~~~~v~~v~~sp--dg~-~l~~gs-~--dg~i~l~d~~~~~~~~~~~-~~~ 433 (667)
.+|.|.++|+.+ .+... ..+ .......+.+.+ +|. +|+++. . +..+.+|++.........+ .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999873 33332 222 224677788877 454 344443 2 4678888887653333322 222
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEEe-----------------CCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCC
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMITS-----------------EDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGK 496 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~s-----------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~ 496 (667)
+ ......+.+.+.++| .++++.. ..|.|+-+|..+...... .-...+.++|+||++
T Consensus 161 g---~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~---~l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 H---KLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE---GFDFANGINISPDGK 233 (355)
T ss_dssp C---TTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE---EESSEEEEEECTTSS
T ss_pred c---CCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec---CCcccCcceECCCCC
Confidence 2 123568899999986 5555543 125677777643332222 245678999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCC-Cccc--cccccCccceeEEcc-CCcEEEE
Q 005956 497 HIISIG-DDCRVYVWNYDEL-CFPS--SKQKNSVRSCEHFFS-EGVSVAV 541 (667)
Q Consensus 497 ~l~sgs-~Dg~I~iWd~~~~-~~~~--~~~~~~~~~~~~fs~-dg~~lav 541 (667)
+|+.+. ..+.|+.|+++.. .... .........-+++.+ +|.+.+.
T Consensus 234 ~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEE
Confidence 887775 4678999998742 2211 111122233456777 4765553
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.29 E-value=0.37 Score=48.09 Aligned_cols=180 Identities=8% Similarity=0.073 Sum_probs=95.3
Q ss_pred eEEEEeCC----CcEEEEecCCCeEeEEee--CCC-cEEEEEEeeCCCCEEEEEecC------CeEEEEecCCCeEEEec
Q 005956 322 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHN-YVTCVQFNPIDDNYFISGSID------GKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 322 ~l~s~s~D----g~I~iWd~~~~~~~~~~~--h~~-~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~~~~~~~ 388 (667)
.++.|+.+ ..+.+||..+++-...-. ... ....+.+ ++.+++.|+.+ ..+.+||+.+.+-....
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 56666654 568889998876544332 111 1122222 67788888765 45899999988755432
Q ss_pred ccCC--ceEEEEEeeCCCEEEEEec---------CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEE
Q 005956 389 DVRD--VISAICYIPDGKGFIVGSI---------TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIM 457 (667)
Q Consensus 389 ~~~~--~v~~v~~spdg~~l~~gs~---------dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~ 457 (667)
.... .-.+++ .-+++.++.|+. ...+.+||+.+....... .+. ........+.+ + ..+++
T Consensus 135 ~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~i~v 205 (306)
T 3ii7_A 135 SMLTQRCSHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC-PMI----EARKNHGLVFV--K-DKIFA 205 (306)
T ss_dssp CCSSCCBSCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEE
T ss_pred CCcCCcceeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC-Ccc----chhhcceEEEE--C-CEEEE
Confidence 2211 111222 236777777764 345889998877554321 111 11111222222 3 36677
Q ss_pred EEeCC-----CcEEEEECCcceee-EEeCCC-CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956 458 ITSED-----SKLRILDGVDVIHK-FKGLPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 515 (667)
Q Consensus 458 ~~s~d-----g~I~iwd~~~~~~~-~~~~~~-~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~ 515 (667)
.|+.+ ..+.+||..+..-. ...... ......+.+ +++.++.|+.+ ..|.+||..+.
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 76643 46888997643211 111111 111222333 67777778754 45777777664
No 317
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.26 E-value=2 Score=48.88 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=113.7
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEee-CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFD-HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~ 388 (667)
..|.++.-..++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ -|..||..+++...+.
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 458888777778777777665 7889988765433111 2335777654 3 44 55566665 6888998877765441
Q ss_pred -----ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 389 -----DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 389 -----~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
.....|.++....+|.. .+|+..| +..|+..+..... +............|.++...+++ ..|.+++. +
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~ 211 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQI-YVGTYNG-LCRYIPSNGKFEG--IPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-G 211 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCE-EEEETTE-EEEEETTTTEEEE--ECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-E
T ss_pred cCCCCcCCCeEEEEEEcCCCCE-EEEeCCC-HhhCccCCCceEE--ecCCCccccccceeEEEEEECCC-CEEEEEEC-C
Confidence 12345788887777754 4466554 6677776554321 11111111112458888877664 34444443 4
Q ss_pred cEEEEECCcc-eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 005956 464 KLRILDGVDV-IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 464 ~I~iwd~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~ 516 (667)
-+..+|.... ...+... ....|.++....+|.+.+.. .+ -+.+++..+..
T Consensus 212 Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAGT-DN-GLYVYHNDTTP 262 (758)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEEE-TT-EEEEECCTTSC
T ss_pred CCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEEe-CC-ceeEEecCCCc
Confidence 5888886532 2222211 23457788888888766544 44 58888877654
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.15 E-value=0.56 Score=47.06 Aligned_cols=132 Identities=8% Similarity=0.018 Sum_probs=70.0
Q ss_pred EEEEecCCCeEeEEeeCCCcE--EEEEEeeCCCCEEEEEecC--------CeEEEEecCCCeEEEecccCCc-eEEEEEe
Q 005956 332 VRMWQVGCNQCLNVFDHHNYV--TCVQFNPIDDNYFISGSID--------GKVRIWGVCEKRVVDWADVRDV-ISAICYI 400 (667)
Q Consensus 332 I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~d~~~l~sgs~D--------g~v~iwdl~~~~~~~~~~~~~~-v~~v~~s 400 (667)
+.+||..+++-...-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-......... ....+..
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778888877653322211111 122222 56777777743 4589999998875543322111 1111222
Q ss_pred eCCCEEEEEec-C-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCC-----cEEEEE
Q 005956 401 PDGKGFIVGSI-T-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDS-----KLRILD 469 (667)
Q Consensus 401 pdg~~l~~gs~-d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg-----~I~iwd 469 (667)
-+++.++.|+. + ..+.+||..+....... .+. ........+.+ + ..+++.|+.++ .+.+||
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQ----TARSLFGATVH--D-GRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEEEEECSSSEEEEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCC----CchhceEEEEE--C-CEEEEEeccCCCCccceEEEEE
Confidence 56777788776 2 46889998877554321 111 11111222222 3 36777777654 588888
Q ss_pred CCcc
Q 005956 470 GVDV 473 (667)
Q Consensus 470 ~~~~ 473 (667)
..+.
T Consensus 219 ~~~~ 222 (315)
T 4asc_A 219 ITDN 222 (315)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7643
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.06 E-value=3.8 Score=49.09 Aligned_cols=223 Identities=9% Similarity=0.054 Sum_probs=124.4
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE--EeeCCCcEEEEEEeeCC-----CCEEEEEec-CCeEEEEecCCC
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN--VFDHHNYVTCVQFNPID-----DNYFISGSI-DGKVRIWGVCEK 382 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~d-----~~~l~sgs~-Dg~v~iwdl~~~ 382 (667)
.|...+.+. ..++.++ .+.+.++.+..++... .......|.|+++.|.. ..+++.|.. |++|+|+++.+.
T Consensus 515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 566666543 3444444 5778888887654322 22356789999998632 478999996 999999999987
Q ss_pred eEEEeccc--CCceEEEEEee--CCCEEEEEecCCcEEEEEecC--CcceeeeEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 383 RVVDWADV--RDVISAICYIP--DGKGFIVGSITGTCHFYKASG--NDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 383 ~~~~~~~~--~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~--~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
+.+..... ...+.++++.. ...+|.+|-.||.+..+.+.. +.+.......-+. .++.-..+...|...+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~-----~pv~L~~~~~~~~~~V 667 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT-----QPTVLRTFRSLSTTNV 667 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----SCCEEEEEESSSCEEE
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----CceEEEEEeeCCceeE
Confidence 66543333 23455665543 235788899999987776653 3332222122221 3454444544444445
Q ss_pred EEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCCcc--ccccccCccceeEE
Q 005956 457 MITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTG--KHIISIGDDCRVYVWNYDELCFP--SSKQKNSVRSCEHF 532 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~sgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~f 532 (667)
++.+. .-..++-.... ..+........-....|+... .-++..+ ++.++|..+++.... ...........+++
T Consensus 668 ~a~s~-rp~liy~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y 744 (1158)
T 3ei3_A 668 FACSD-RPTVIYSSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICY 744 (1158)
T ss_dssp EEESS-SCEEEEESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEE
T ss_pred EEECC-CCEEEEEcCCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEE
Confidence 55543 33333432222 223322122222344464321 3344444 456999988654321 11234445566789
Q ss_pred ccCCcEEEEec
Q 005956 533 FSEGVSVAVQW 543 (667)
Q Consensus 533 s~dg~~lav~w 543 (667)
+|+...+++..
T Consensus 745 ~~~~~~~~v~~ 755 (1158)
T 3ei3_A 745 QEVSQCFGVLS 755 (1158)
T ss_dssp EGGGTEEEEEE
T ss_pred cCCCCEEEEEE
Confidence 99888776643
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.01 E-value=1.6 Score=44.52 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=123.1
Q ss_pred eeeccccccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcc
Q 005956 216 QEIQAHKGCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVF 295 (667)
Q Consensus 216 ~~l~~H~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (667)
+++...-..-+.|+|.|||++|++--..|.|++++...+....+..
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~---------------------------------- 70 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGE---------------------------------- 70 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------------------
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecc----------------------------------
Confidence 3444445567899999999988877658888888654322111000
Q ss_pred cccCCcceeeeccccceEEEEecCC----CeEEEE---eCCCcEEEEecCCC----------eEe-EEee--CCCcEEEE
Q 005956 296 QIEESPLQELHGHKGDVLDLAWSNS----NYLLSC---SMDKTVRMWQVGCN----------QCL-NVFD--HHNYVTCV 355 (667)
Q Consensus 296 ~~~~~~~~~l~gh~~~V~~l~~s~~----~~l~s~---s~Dg~I~iWd~~~~----------~~~-~~~~--h~~~V~~l 355 (667)
.+ ..+.........|+++|+ +.|+.. ..+..|.-|.+..+ +.+ ..+. .......|
T Consensus 71 ----~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l 145 (347)
T 3das_A 71 ----VP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRI 145 (347)
T ss_dssp ----CT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCE
T ss_pred ----cC-ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccc
Confidence 00 011223456789999985 544332 23445555655431 111 1122 12234579
Q ss_pred EEeeCCCCEEEEEec-------------CCeEEEEecCCC---------eEEEecccCCceEEEEEeeCCCEEEEEe-cC
Q 005956 356 QFNPIDDNYFISGSI-------------DGKVRIWGVCEK---------RVVDWADVRDVISAICYIPDGKGFIVGS-IT 412 (667)
Q Consensus 356 ~f~p~d~~~l~sgs~-------------Dg~v~iwdl~~~---------~~~~~~~~~~~v~~v~~spdg~~l~~gs-~d 412 (667)
.|.| ++.++++.+. .|+|.-++.... ..+....+ .....++|+|+|..+++=. .+
T Consensus 146 ~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~ 223 (347)
T 3das_A 146 AFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQD 223 (347)
T ss_dssp EECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSS
T ss_pred cCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCC
Confidence 9999 8887777542 355555555432 11122233 2356789999887655522 23
Q ss_pred CcEEEEEecCCcceee-eEeec----cc------cCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcce---e-eE
Q 005956 413 GTCHFYKASGNDLKLE-KVDFH----DR------KKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVI---H-KF 477 (667)
Q Consensus 413 g~i~l~d~~~~~~~~~-~~~~~----~~------~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~---~-~~ 477 (667)
+.-.|.-+..+..--. ..... +. ...+......++|.. | ..++..-..+.|....+.... . ..
T Consensus 224 ~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~~~e~ 301 (347)
T 3das_A 224 TWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAADPQA 301 (347)
T ss_dssp SCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESSCCEE
T ss_pred CCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceecceEE
Confidence 3233333322211000 00000 00 000112456777774 2 455555555666655543211 0 11
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEe
Q 005956 478 KGLPKSGSQMSASFTTTGKHIISIG 502 (667)
Q Consensus 478 ~~~~~~~~v~~v~~spdg~~l~sgs 502 (667)
........+..++..|||.++++.+
T Consensus 302 ~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 302 FLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eecCCCCCccEEEECCCCcEEEEEc
Confidence 1112346788899999987666544
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.98 E-value=2.1 Score=45.57 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=22.3
Q ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 005956 222 KGCIWTLKFSPDGRYLASGGEDGVVRIWHVT 252 (667)
Q Consensus 222 ~~~I~~v~fspdg~~Latgs~Dg~I~vWdv~ 252 (667)
-..-+.|+|.|+|+++++-...+.|++++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 4457899999999977775444467776644
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.82 E-value=3.5 Score=46.87 Aligned_cols=190 Identities=11% Similarity=0.061 Sum_probs=106.5
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCC------CeEe--EEee-----CCCcEEEEEEeeCCCCEEEEEecCCeEEE
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC------NQCL--NVFD-----HHNYVTCVQFNPIDDNYFISGSIDGKVRI 376 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~------~~~~--~~~~-----h~~~V~~l~f~p~d~~~l~sgs~Dg~v~i 376 (667)
..|.++...+++.|..|+..+-|.++|..+ .... ..+. ....|.++...+ ++++.+.++..+-|..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 457888877788777788777788888643 1111 1221 234588888877 7776664444455888
Q ss_pred EecCCCeEEEeccc----CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCC
Q 005956 377 WGVCEKRVVDWADV----RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 377 wdl~~~~~~~~~~~----~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
+|..+++....... ...+.++....+|... +|+..| +..|+..+...... ...+ -....|.++... +|
T Consensus 498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~--~~~g---l~~~~i~~i~~~-~g 569 (758)
T 3ott_A 498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLW-VGFHGG-VMRINPKDESQQSI--SFGS---FSNNEILSMTCV-KN 569 (758)
T ss_dssp EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE-EEETTE-EEEECC--CCCCBC--CCCC------CCEEEEEEE-TT
T ss_pred EeCCCCceEEecCCCcCCCcccceEEECCCCCEE-EEecCc-eEEEecCCCceEEe--cccC---CCccceEEEEEC-CC
Confidence 99988877654321 2457788877777554 556554 77787765543321 1111 112567888764 54
Q ss_pred CeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 005956 453 SQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFT-TTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
.|..++..| |..+|..+.....-.. ....+..+.+. ++| .|..|+.+| +..++.+.
T Consensus 570 --~lWi~t~~G-l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 570 --SIWVSTTNG-LWIIDRKTMDARQQNM-TNKRFTSLLFDPKED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp --EEEEEESSC-EEEEETTTCCEEEC---CCCCCSEEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred --CEEEECCCC-eEEEcCCCceeEEecC-CCCceeeeEEECCCC-cEEEecCCc-eEEEChhh
Confidence 455555555 7778876432221111 11223344443 455 566667777 45556553
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.58 E-value=0.52 Score=47.17 Aligned_cols=172 Identities=12% Similarity=0.073 Sum_probs=88.1
Q ss_pred CcEEEEecCCCeEeEEee--C-CCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEecccC---CceEEEE
Q 005956 330 KTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVR---DVISAIC 398 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~--h-~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~---~~v~~v~ 398 (667)
..+.+||..+.+-...-. . ......+.+ ++.+++.|+.+ ..+.+||+.+.+-....... ....++.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988776443322 1 111222222 56777777644 35889999887755433221 1122222
Q ss_pred EeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEE
Q 005956 399 YIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRIL 468 (667)
Q Consensus 399 ~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~iw 468 (667)
-+++.++.|+.+ ..+.+||+.+....... .+. ........+.+ + ..+++.|+.+ ..+.+|
T Consensus 167 --~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 167 --LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT-AMN----TIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEE
T ss_pred --ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC-CCC----CccccceEEEE--C-CEEEEEeCCCCCCccceEEEE
Confidence 267777777764 45889998876554321 011 11112222333 3 3677777654 568999
Q ss_pred ECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005956 469 DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDEL 515 (667)
Q Consensus 469 d~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~ 515 (667)
|+.+..-... .......-.+++. -+++.++.|+.+ ..|.+||..+.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 9764322111 1111111112222 256677777644 24566666543
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.52 E-value=0.18 Score=52.56 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=91.6
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEEeeCC-----CcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCe-------------
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNVFDHH-----NYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKR------------- 383 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~------------- 383 (667)
.++.+- ++.||.-++.....-+.+... ..|..+..+| +|++|+..+ +..|.|..+..+.
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 444333 378888888744444444322 2578899999 999998876 5689998887321
Q ss_pred E--EEecc----cCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceeeeEeecccc-----CcCCCCeEEEEEc
Q 005956 384 V--VDWAD----VRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRK-----KTSGNKITGIQFS 449 (667)
Q Consensus 384 ~--~~~~~----~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~-----~~~~~~I~~l~~s 449 (667)
+ ..... ....|..+.|+| .+..|++-+.|+.|++||+........ .+.... ......|.+++|.
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEESCSSCCCEEEEEEC
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccCCCcccceEEEEEEc
Confidence 1 11111 246799999999 456899999999999999986322111 221111 1122678999999
Q ss_pred cCCCeEEEEEe--CCCcEEEE
Q 005956 450 RDESQRIMITS--EDSKLRIL 468 (667)
Q Consensus 450 p~g~~~l~~~s--~dg~I~iw 468 (667)
+++ -.|.+.+ .+|.|+-.
T Consensus 189 ~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTS-SCEEEEECTTSCEEEEE
T ss_pred CCC-cEEEEEecCCCCCEEEE
Confidence 975 5555544 77888764
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.30 E-value=1.5 Score=43.84 Aligned_cols=187 Identities=10% Similarity=0.013 Sum_probs=102.7
Q ss_pred CCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecC--------------CeEEEEecCCCeEEEecccCCce
Q 005956 329 DKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSID--------------GKVRIWGVCEKRVVDWADVRDVI 394 (667)
Q Consensus 329 Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~D--------------g~v~iwdl~~~~~~~~~~~~~~v 394 (667)
++.|...+.+.....+.... .+--+++ +++.|+.+... ..|+..++...+...+....
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~----~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--- 107 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND----TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--- 107 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE----EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred CceEEEEcCCCCCCEEccCC----ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence 45566666654443333221 1345577 77777776543 36788888877644433322
Q ss_pred EEEEEeeCCCEEEEEe--cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCc
Q 005956 395 SAICYIPDGKGFIVGS--ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVD 472 (667)
Q Consensus 395 ~~v~~spdg~~l~~gs--~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~ 472 (667)
+..++++++.|+... .++.-.||.+.......+.+.-. .+ ..+++++..+..+......|.+.++..
T Consensus 108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 236788999988876 34555555444322222222211 11 345677644444544467888888764
Q ss_pred ceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCccccccccCccceeEEccCCcEEEEe
Q 005956 473 VIHKFKGLPKSGSQMSASFTTTGKHIISIGDD--CRVYVWNYDELCFPSSKQKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 473 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~D--g~I~iWd~~~~~~~~~~~~~~~~~~~~fs~dg~~lav~ 542 (667)
...+.... +... ..++|++.+|+-...+ ..|..-++++.......... ...|+|++..|..+
T Consensus 177 ~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~----~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 177 QSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN----IEHYNVYGSLIFYQ 240 (302)
T ss_dssp TEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC----EEEEEEETTEEEEE
T ss_pred CCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC----cceEEECCCEEEEE
Confidence 33222221 1222 3456999999876644 35666677766543332211 24588889888654
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.23 E-value=1.5 Score=43.92 Aligned_cols=131 Identities=9% Similarity=0.058 Sum_probs=68.7
Q ss_pred EEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-------CeEEEEecCCCeEEEecccCCc-eEEEEEee
Q 005956 332 VRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-------GKVRIWGVCEKRVVDWADVRDV-ISAICYIP 401 (667)
Q Consensus 332 I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-------g~v~iwdl~~~~~~~~~~~~~~-v~~v~~sp 401 (667)
+.+||..+++-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-......... ....+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 7788888776543322 11111122222 57788888764 3588899988775543322211 11112225
Q ss_pred CCCEEEEEecC------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEEEEEC
Q 005956 402 DGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLRILDG 470 (667)
Q Consensus 402 dg~~l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~iwd~ 470 (667)
+++.++.|+.+ ..+.+||+.+....... .+. ........+.+ + ..+++.|+.+ ..+.+||.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~ 229 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMK----TPRSMFGVAIH--K-GKIVIAGGVTEDGLSASVEAFDL 229 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEEEEEETTEEEEEEEEEET
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCC----CCcccceEEEE--C-CEEEEEcCcCCCCccceEEEEEC
Confidence 67777777642 35889999877654321 111 11111222222 3 3677777643 35778887
Q ss_pred Cc
Q 005956 471 VD 472 (667)
Q Consensus 471 ~~ 472 (667)
.+
T Consensus 230 ~~ 231 (318)
T 2woz_A 230 KT 231 (318)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.14 E-value=0.98 Score=44.75 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=91.3
Q ss_pred CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCe---EEEeccc---CCceEE
Q 005956 330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKR---VVDWADV---RDVISA 396 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~---~~~~~~~---~~~v~~ 396 (667)
..+.+||..+++-...-. ....-.++.. . ++.+++.|+.+ ..+.+||+.+.+ -...... .....+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368889988776443322 1111112222 2 67788888765 468999998876 4332221 111222
Q ss_pred EEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-----CcEE
Q 005956 397 ICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-----SKLR 466 (667)
Q Consensus 397 v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-----g~I~ 466 (667)
+. .+++.++.|+.+ ..+.+||..+....... .+... ......+.+ + +.+++.|+.+ ..+.
T Consensus 109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~----r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQTA----REGAGLVVA--S-GVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECSSC----CBSCEEEEE--T-TEEEEECCBCSSCBCCCEE
T ss_pred EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCCCC----cccceEEEE--C-CEEEEECCCCCCcccceEE
Confidence 22 367777777754 35888998876654321 11110 111122222 3 3677777654 4688
Q ss_pred EEECCcceeeEEe-CCCC-CCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956 467 ILDGVDVIHKFKG-LPKS-GSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 516 (667)
Q Consensus 467 iwd~~~~~~~~~~-~~~~-~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~ 516 (667)
+||..+..-.... .... .....+. .+++.++.|+.+ ..|.+||+.+..
T Consensus 179 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 9997643222111 1111 1112222 256777777764 468999988764
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.92 E-value=1.1 Score=47.66 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEec---c------cCCceEEEEEeeC---CCEEEEEec-----
Q 005956 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWA---D------VRDVISAICYIPD---GKGFIVGSI----- 411 (667)
Q Consensus 349 ~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~---~------~~~~v~~v~~spd---g~~l~~gs~----- 411 (667)
-...+.|+|.| +++++++-...+.|++++..+++...+. . ....+..|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34678999999 8887666443357988887655433211 1 2345779999995 555555443
Q ss_pred --------CCcEEEEEecCCccee--eeEeeccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 412 --------TGTCHFYKASGNDLKL--EKVDFHDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 412 --------dg~i~l~d~~~~~~~~--~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
...|.-|+........ ....+.............|+|.||| .++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 2356666654332111 1111111111122457899999998 4444433
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.75 E-value=0.55 Score=44.48 Aligned_cols=168 Identities=12% Similarity=-0.059 Sum_probs=92.4
Q ss_pred CCEEEEEecCCeEEEEecCCCeEE------Eeccc--CCceEEEEEeeCCCEEEEEecCCcEEEEEecCCccee-----e
Q 005956 362 DNYFISGSIDGKVRIWGVCEKRVV------DWADV--RDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKL-----E 428 (667)
Q Consensus 362 ~~~l~sgs~Dg~v~iwdl~~~~~~------~~~~~--~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~-----~ 428 (667)
+.+|+....| +|+.=....+..- ..... =..+..++|+|+|.+.++ .+|.+.-.+..+..... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455556666 6555544443311 11111 236789999999997777 77776555543322111 0
Q ss_pred eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc-------eeeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 429 KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV-------IHKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 429 ~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
.+.-.+- .....+.|.|+| .+.++ .||.|+-++..+. .....+...-..+..+.|.|+|.+.+..
T Consensus 81 ~IG~~Gw-----~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 81 KIGNGGW-----NQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEECSCG-----GGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred Eeccccc-----ccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 1100010 114788999997 44444 5699988875320 1112222234567899999999877766
Q ss_pred eCCCcEEEEEcCCCCc-ccc------c-cccCccceeEEccCCcEEEEe
Q 005956 502 GDDCRVYVWNYDELCF-PSS------K-QKNSVRSCEHFFSEGVSVAVQ 542 (667)
Q Consensus 502 s~Dg~I~iWd~~~~~~-~~~------~-~~~~~~~~~~fs~dg~~lav~ 542 (667)
|+.++-+....... ... . ..-.....+.|.++|.+.++.
T Consensus 153 --dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 153 --GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp --TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred --CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 77765433332211 000 1 111234456799999999997
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.64 E-value=2 Score=42.43 Aligned_cols=175 Identities=13% Similarity=0.140 Sum_probs=90.2
Q ss_pred CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecC-----CeEEEEecCCCeEEEecccCCc--eEEEEEe
Q 005956 330 KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSID-----GKVRIWGVCEKRVVDWADVRDV--ISAICYI 400 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~D-----g~v~iwdl~~~~~~~~~~~~~~--v~~v~~s 400 (667)
..+.+||+.+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-......... -.+++ .
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E
Confidence 357888888776443321 11111122222 67778887755 3588999988875543322111 11222 2
Q ss_pred eCCCEEEEEecCC-----cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-------CcEEEE
Q 005956 401 PDGKGFIVGSITG-----TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-------SKLRIL 468 (667)
Q Consensus 401 pdg~~l~~gs~dg-----~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-------g~I~iw 468 (667)
-+++.+++|+.++ .+.+||+.+....... .+. ........+.+ + ..+++.|+.+ ..+.+|
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~y 178 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMN----TRRSSVGVGVV--G-GLLYAVGGYDVASRQCLSTVECY 178 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCS----SCCBSCEEEEE--T-TEEEEECCEETTTTEECCCEEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCC----CcccCceEEEE--C-CEEEEEeCCCCCCCccccEEEEE
Confidence 3677888887654 5778888776554321 111 11111222222 3 3566666542 458889
Q ss_pred ECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956 469 DGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 516 (667)
Q Consensus 469 d~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~ 516 (667)
|..+..-... .......-.+++. -++++++.|+.+ ..+.+||..+..
T Consensus 179 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 179 NATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred eCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 9764322211 1111111112222 257777777754 368899987754
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.62 E-value=3.8 Score=40.86 Aligned_cols=162 Identities=7% Similarity=0.009 Sum_probs=89.9
Q ss_pred CcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEe----cCCeEEEEecCCCeEEEecccCCceEEEEEeeCCCE
Q 005956 330 KTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGS----IDGKVRIWGVCEKRVVDWADVRDVISAICYIPDGKG 405 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs----~Dg~v~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~ 405 (667)
..|+..++...+........ +..|++ +++.|+... ....|+..++.......+..+.. ..++|+|+.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP----CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC----EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecCC----ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 46777777766543333222 236777 777777665 34456667777655544444332 456888988
Q ss_pred EEEEec-CCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCC-CcEEEEECCcce-eeEEeCCC
Q 005956 406 FIVGSI-TGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSED-SKLRILDGVDVI-HKFKGLPK 482 (667)
Q Consensus 406 l~~gs~-dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~d-g~I~iwd~~~~~-~~~~~~~~ 482 (667)
|...+. ...|...++.+.... .+ .. +... ..+.|+++.++.+...+ ..|..-++.... ..+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~--~l-~~-------~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt---- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEA--LF-YD-------CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT---- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEE--EE-EC-------SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS----
T ss_pred EEEEeCCCceEEEEECCCCCEE--EE-eC-------CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe----
Confidence 887665 567777777654432 12 11 1122 23568864444443333 355555554221 2221
Q ss_pred CCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCc
Q 005956 483 SGSQMSASFTTTGKHIISIGD--DCRVYVWNYDELCF 517 (667)
Q Consensus 483 ~~~v~~v~~spdg~~l~sgs~--Dg~I~iWd~~~~~~ 517 (667)
...+ ..|+|++++|+-++. .+.|..-+++....
T Consensus 224 ~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r 258 (302)
T 3s25_A 224 EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF 258 (302)
T ss_dssp CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC
T ss_pred CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc
Confidence 2223 347888999886632 35677777776543
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.49 E-value=2 Score=42.50 Aligned_cols=181 Identities=10% Similarity=0.087 Sum_probs=96.0
Q ss_pred eEEEEeC--CCcEEEEecCCCeEeEEee--C-CCcEEEEEEeeCCCCEEEEEecC----CeEEEEecCCCeEEEecccC-
Q 005956 322 YLLSCSM--DKTVRMWQVGCNQCLNVFD--H-HNYVTCVQFNPIDDNYFISGSID----GKVRIWGVCEKRVVDWADVR- 391 (667)
Q Consensus 322 ~l~s~s~--Dg~I~iWd~~~~~~~~~~~--h-~~~V~~l~f~p~d~~~l~sgs~D----g~v~iwdl~~~~~~~~~~~~- 391 (667)
.++.|+. ...+.+||..+++-...-. . ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.......
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4555554 3578899998876543321 1 112222222 67788888765 67899999988755432221
Q ss_pred --CceEEEEEeeCCCEEEEEecC------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC--
Q 005956 392 --DVISAICYIPDGKGFIVGSIT------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE-- 461 (667)
Q Consensus 392 --~~v~~v~~spdg~~l~~gs~d------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~-- 461 (667)
....++ .-+++.++.|+.+ ..+.+||..+....... .+.. .......+.+ ++ .+++.|+.
T Consensus 91 ~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~~~--~~-~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAAC--AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-SMLT----QRCSHGMVEA--NG-LIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEE--EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-CCSS----CCBSCEEEEE--TT-EEEEECCEES
T ss_pred cccceeEE--EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-CCcC----CcceeEEEEE--CC-EEEEECCCCC
Confidence 112222 2367777888765 46889998877653320 1111 1111122222 33 56666653
Q ss_pred -------CCcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956 462 -------DSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 516 (667)
Q Consensus 462 -------dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~ 516 (667)
-..+.+||..+..-. .........-.+++. -+++.++.|+.+ ..|.+||..+..
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 345889997643221 111111111112222 266777777653 368899988763
No 333
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.23 E-value=0.91 Score=46.60 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=78.6
Q ss_pred CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccC---CCeEEEEEeC-------
Q 005956 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRD---ESQRIMITSE------- 461 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~------- 461 (667)
.....++|.|+|+.|+++...|.|++++... ........+.............|+++|+ ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4578899999998455666789999988532 2111000010001112345789999995 4344444332
Q ss_pred CCcEEEEECCc-------ceeeEEeCC----CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCCc
Q 005956 462 DSKLRILDGVD-------VIHKFKGLP----KSGSQMSASFTTTGKHIISIGDD-------------CRVYVWNYDELCF 517 (667)
Q Consensus 462 dg~I~iwd~~~-------~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~D-------------g~I~iWd~~~~~~ 517 (667)
...|..|+... ....+.... .......++|.|||.+.++.+.. |.|.-++.+..-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 23566565431 111222221 11224579999999666655432 4566666553210
Q ss_pred ------------ccc-ccccCccceeEEcc-CCcEEEEecC
Q 005956 518 ------------PSS-KQKNSVRSCEHFFS-EGVSVAVQWP 544 (667)
Q Consensus 518 ------------~~~-~~~~~~~~~~~fs~-dg~~lav~w~ 544 (667)
... ........-++|.| +|.+.+..-.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence 000 00111233468898 6777766544
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.21 E-value=12 Score=44.61 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=93.8
Q ss_pred cccEEEEEEcCC------CCEEEEEEC-CCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCc
Q 005956 222 KGCIWTLKFSPD------GRYLASGGE-DGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEV 294 (667)
Q Consensus 222 ~~~I~~v~fspd------g~~Latgs~-Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (667)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+.......-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~--------------------------------- 599 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM--------------------------------- 599 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE---------------------------------
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE---------------------------------
Confidence 457999999864 369999997 9999999998643321110
Q ss_pred ccccCCcceeeec--cccceEEEEecCCC-eEEEEeCCCcEEEEec--CCCeEeEE---eeCCCcEEEEEEeeCCCCEEE
Q 005956 295 FQIEESPLQELHG--HKGDVLDLAWSNSN-YLLSCSMDKTVRMWQV--GCNQCLNV---FDHHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 295 ~~~~~~~~~~l~g--h~~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~--~~~~~~~~---~~h~~~V~~l~f~p~d~~~l~ 366 (667)
+.+ -...|.-+.+ ... +|..|-.||.+.-+.+ .++..... +-...++.-..|.. .+..-+
T Consensus 600 ----------L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~-~~~~~V 667 (1158)
T 3ei3_A 600 ----------LGGEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS-LSTTNV 667 (1158)
T ss_dssp ----------CCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEES-SSCEEE
T ss_pred ----------CCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEee-CCceeE
Confidence 000 0111222233 223 7888888998766554 34544322 11344555444543 333333
Q ss_pred EEecCCeEEEEecCCCeEEE-ecccCCceEE-EEEeeC--CCEEEEEecCCcEEEEEecCCc-ceeeeEeeccccCcCCC
Q 005956 367 SGSIDGKVRIWGVCEKRVVD-WADVRDVISA-ICYIPD--GKGFIVGSITGTCHFYKASGND-LKLEKVDFHDRKKTSGN 441 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~-~~~~~~~v~~-v~~spd--g~~l~~gs~dg~i~l~d~~~~~-~~~~~~~~~~~~~~~~~ 441 (667)
.+..+.-..+|--. ++... -.... .+.. ..|+.. ...++..+ ++.++|..+.... +....+.+ ..
T Consensus 668 ~a~s~rp~liy~~~-~~l~~s~l~~~-~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL-------~~ 737 (1158)
T 3ei3_A 668 FACSDRPTVIYSSN-HKLVFSNVNLK-EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPL-------YE 737 (1158)
T ss_dssp EEESSSCEEEEESS-SSEEEEEBSSS-CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEEC-------SS
T ss_pred EEECCCCEEEEEcC-CceEEeccChH-HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeC-------CC
Confidence 33334444445433 33322 11222 2333 334332 24555444 5569998885432 22223333 25
Q ss_pred CeEEEEEccCCCeEEEE
Q 005956 442 KITGIQFSRDESQRIMI 458 (667)
Q Consensus 442 ~I~~l~~sp~g~~~l~~ 458 (667)
.+..++++|....+++.
T Consensus 738 Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 738 SPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEEEEEEEGGGTEEEEE
T ss_pred CceEEEEcCCCCEEEEE
Confidence 67888888875334333
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.13 E-value=1.8 Score=43.10 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=95.0
Q ss_pred eEEEEeCC----CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEec----C-----CeEEEEecCCCeEEE
Q 005956 322 YLLSCSMD----KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSI----D-----GKVRIWGVCEKRVVD 386 (667)
Q Consensus 322 ~l~s~s~D----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~----D-----g~v~iwdl~~~~~~~ 386 (667)
.++.|+.+ ..+.+||..+++-...-. ....-.+++.. ++.+++.|+. + ..+.+||+.+.+-..
T Consensus 27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~ 104 (308)
T 1zgk_A 27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP 104 (308)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE
Confidence 55555532 368889988776544321 11111122222 5677777775 2 468899998887554
Q ss_pred ecccC---CceEEEEEeeCCCEEEEEecC-----CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 387 WADVR---DVISAICYIPDGKGFIVGSIT-----GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 387 ~~~~~---~~v~~v~~spdg~~l~~gs~d-----g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
..... ....++. -+++.+++|+.+ ..+.+||..+....... .+. ........+.+ + ..+++.
T Consensus 105 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p----~~r~~~~~~~~--~-~~iyv~ 174 (308)
T 1zgk_A 105 CAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML----TRRIGVGVAVL--N-RLLYAV 174 (308)
T ss_dssp CCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS----SCCBSCEEEEE--T-TEEEEE
T ss_pred CCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC----ccccceEEEEE--C-CEEEEE
Confidence 33221 1122222 367777777654 36788998876554321 111 11111222233 3 367777
Q ss_pred EeCC-----CcEEEEECCcceeeEEe-CCC-CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956 459 TSED-----SKLRILDGVDVIHKFKG-LPK-SGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 516 (667)
Q Consensus 459 ~s~d-----g~I~iwd~~~~~~~~~~-~~~-~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~ 516 (667)
|+.+ ..+.+||..+..-.... ... ......+.+ +++.++.|+.+ ..+.+||+.+..
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 7654 46888997643211111 111 111122222 66777777654 468999988764
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.03 E-value=5.3 Score=39.67 Aligned_cols=182 Identities=10% Similarity=0.107 Sum_probs=94.3
Q ss_pred eEEEEeCCCcEEEEecCCCeEeEE-eeCC-CcEEEEEEeeCCCCEEEEEec----C-------CeEEEEecCCCeEEEec
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLNV-FDHH-NYVTCVQFNPIDDNYFISGSI----D-------GKVRIWGVCEKRVVDWA 388 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~~-~~h~-~~V~~l~f~p~d~~~l~sgs~----D-------g~v~iwdl~~~~~~~~~ 388 (667)
+++.|+ ..+.+||..+++-... .... .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 5789999998875431 1111 1222222223 6788888884 1 12788999888765433
Q ss_pred ccCCce--EEEEEeeCCCEEEEEecC--------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 389 DVRDVI--SAICYIPDGKGFIVGSIT--------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 389 ~~~~~v--~~v~~spdg~~l~~gs~d--------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
.....- .+++. -+++.++.|+.+ ..+.+||..++...... .+.. .......+ . -+ ..+++.
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~----~r~~~~~~-~-~~-~~iyv~ 154 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-PLPY----VVYGHTVL-S-HM-DLVYVI 154 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-CCSS----CCBSCEEE-E-ET-TEEEEE
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-CCCC----cccceeEE-E-EC-CEEEEE
Confidence 322111 12222 266777777743 35889998876543221 1111 11111222 2 23 366777
Q ss_pred EeC-C-----CcEEEEECCcceeeEE-eCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCC
Q 005956 459 TSE-D-----SKLRILDGVDVIHKFK-GLPKSGSQMSASFTTTGKHIISIGDDC-----RVYVWNYDELC 516 (667)
Q Consensus 459 ~s~-d-----g~I~iwd~~~~~~~~~-~~~~~~~v~~v~~spdg~~l~sgs~Dg-----~I~iWd~~~~~ 516 (667)
|+. + ..+.+||..+..-... .......-.+++. -+++.++.|+.++ .+.+||..+..
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 765 2 4688999764321111 1111111112222 2677777887654 58888887763
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.67 E-value=1 Score=45.98 Aligned_cols=87 Identities=8% Similarity=0.125 Sum_probs=50.2
Q ss_pred CcEEEEecCCCeEeEEeeCC-C---cEEEEEEeeCCCCEEEEEecC----------------------------------
Q 005956 330 KTVRMWQVGCNQCLNVFDHH-N---YVTCVQFNPIDDNYFISGSID---------------------------------- 371 (667)
Q Consensus 330 g~I~iWd~~~~~~~~~~~h~-~---~V~~l~f~p~d~~~l~sgs~D---------------------------------- 371 (667)
..+.+||..+.+-...-... . ...++. . ++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAE 162 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccc
Confidence 46889999887644332211 1 122223 3 77888888864
Q ss_pred -----CeEEEEecCCCeEEEecccC--Cce-EEEEEeeCCCEEEEEec------CCcEEEEEe
Q 005956 372 -----GKVRIWGVCEKRVVDWADVR--DVI-SAICYIPDGKGFIVGSI------TGTCHFYKA 420 (667)
Q Consensus 372 -----g~v~iwdl~~~~~~~~~~~~--~~v-~~v~~spdg~~l~~gs~------dg~i~l~d~ 420 (667)
..+.+||+.+.+-....... ... .+++. -+++.+++|+. ...+..||+
T Consensus 163 ~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 163 DYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999887754432221 111 22332 36677777764 235677876
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.39 E-value=7.7 Score=39.47 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=122.0
Q ss_pred eeeeccccceEEEEecCCCeEEEEeC-CCcEEEEecCCCeEeEE--e-----eCCCcEEEEEEeeCC---CCEEEEE-e-
Q 005956 303 QELHGHKGDVLDLAWSNSNYLLSCSM-DKTVRMWQVGCNQCLNV--F-----DHHNYVTCVQFNPID---DNYFISG-S- 369 (667)
Q Consensus 303 ~~l~gh~~~V~~l~~s~~~~l~s~s~-Dg~I~iWd~~~~~~~~~--~-----~h~~~V~~l~f~p~d---~~~l~sg-s- 369 (667)
..+...-...+.|+|.|+|.|+.+.. .|.|++++..+++.... + ........|+|+| + +..|+.. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P-df~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP-DYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT-THHHHCEEEEEEEC
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc-ccccCCEEEEEEec
Confidence 33444455678999999995555555 89999998766554222 2 1345788999998 4 3344332 2
Q ss_pred -cCCeEEEEecCCC----------eEE-E-ec-ccCCceEEEEEeeCCCEEEEEec-------------CCcEEEEEecC
Q 005956 370 -IDGKVRIWGVCEK----------RVV-D-WA-DVRDVISAICYIPDGKGFIVGSI-------------TGTCHFYKASG 422 (667)
Q Consensus 370 -~Dg~v~iwdl~~~----------~~~-~-~~-~~~~~v~~v~~spdg~~l~~gs~-------------dg~i~l~d~~~ 422 (667)
.+..|.-|.+..+ +.+ . +. ........|.|.|||.++++.+. .|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 3455666655441 111 1 11 12233567999999987666432 24444444432
Q ss_pred Ccce-----eeeEeeccccCcCCCCeEEEEEccCCCeEEEEE-eCCC--cEEEEECC-c--------------cee-eEE
Q 005956 423 NDLK-----LEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT-SEDS--KLRILDGV-D--------------VIH-KFK 478 (667)
Q Consensus 423 ~~~~-----~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~-s~dg--~I~iwd~~-~--------------~~~-~~~ 478 (667)
.-.. ...+-..++ .....++|.|+| .+.++- +.++ .|.+.... + ... .+.
T Consensus 184 ~ip~~nPf~~~~i~a~G~-----RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGH-----RNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp SBCTTCSSTTCCEEEBCC-----SBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred CccCCCCCCCCeEEeeCC-----CCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 2000 001111111 235688999975 333322 2332 23332110 0 000 011
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-----ccccccCccceeEEccCCcEEEEecCCCC
Q 005956 479 GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFP-----SSKQKNSVRSCEHFFSEGVSVAVQWPGIG 547 (667)
Q Consensus 479 ~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~-----~~~~~~~~~~~~~fs~dg~~lav~w~~~~ 547 (667)
...+......++|. +|..++..-..+.|....++..... ...........+...|||.+.++..+.++
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g 330 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG 330 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence 11112355677775 4555555555566766666544211 11111223445788999988887766554
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.30 E-value=3.6 Score=49.48 Aligned_cols=203 Identities=12% Similarity=0.150 Sum_probs=111.6
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCC-CeEeEEee-C----CCcEEEEEEeeCCCCEEEEEe-------cCCeEEE
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGC-NQCLNVFD-H----HNYVTCVQFNPIDDNYFISGS-------IDGKVRI 376 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~-~~~~~~~~-h----~~~V~~l~f~p~d~~~l~sgs-------~Dg~v~i 376 (667)
.+|.--.|-....|+-.+. ..|.-|++.. ..+.+.|. | ...|..-..++ +.+.++..+ ..|.+.+
T Consensus 106 e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 106 DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeee
Confidence 4577777766664443332 4799999974 34555553 2 34566667777 666665443 3478899
Q ss_pred EecCCCeEEEecccCCceEEEEEe--e-CCCEEEEEec---CCcEEEEEecCC-----cceeeeEeeccccCcCCCCeEE
Q 005956 377 WGVCEKRVVDWADVRDVISAICYI--P-DGKGFIVGSI---TGTCHFYKASGN-----DLKLEKVDFHDRKKTSGNKITG 445 (667)
Q Consensus 377 wdl~~~~~~~~~~~~~~v~~v~~s--p-dg~~l~~gs~---dg~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~~I~~ 445 (667)
|....+....+.+|-.....+... + ..+.++.+.. .+.++|.++... ........+.-.......--.+
T Consensus 184 yS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~ 263 (1630)
T 1xi4_A 184 YSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (1630)
T ss_pred eecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceE
Confidence 988776654444444333222221 1 1122222222 368888888543 1111111111111112334456
Q ss_pred EEEccCCCeEEEEEeCCCcEEEEECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 446 IQFSRDESQRIMITSEDSKLRILDGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 446 l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
++.++. ...+..-+.-|.|+++|+.+....|...-...+|...+......=++.....|.|.--.++..
T Consensus 264 ~~vs~k-~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 264 MQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEeccc-cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 677776 357888889999999999887777665444455544444333233344445666665555544
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.28 E-value=2.2 Score=51.33 Aligned_cols=192 Identities=11% Similarity=0.124 Sum_probs=114.3
Q ss_pred cCCCeEEEEeCCCcEEEEecCCCeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCC-eEEEecc-c----C
Q 005956 318 SNSNYLLSCSMDKTVRMWQVGCNQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEK-RVVDWAD-V----R 391 (667)
Q Consensus 318 s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~-~~~~~~~-~----~ 391 (667)
+|...+++--...++.|+|+++...++.+....+|.--.|-. .+.|+..+ +..|+-|++.+. .++.... | .
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 455523322236799999999999999998888888888874 55555554 567999999652 2332222 1 3
Q ss_pred CceEEEEEeeCCCEEEEEe-------cCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEc--cCCCeEEEEEe--
Q 005956 392 DVISAICYIPDGKGFIVGS-------ITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFS--RDESQRIMITS-- 460 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs-------~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~s--p~g~~~l~~~s-- 460 (667)
..|..-..+++.++++..+ ..|.+.+|....+..+. +.++ .+....+... +.....+..+.
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~----iegh----a~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP----IEGH----AASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh----hhHh----HhhhheeccCCCCCCceEEEEEEec
Confidence 4567777788899887644 34788899887544321 1111 1111111111 11011111111
Q ss_pred -CCCcEEEEECCcc---eeeEE---------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcccc
Q 005956 461 -EDSKLRILDGVDV---IHKFK---------GLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDELCFPSS 520 (667)
Q Consensus 461 -~dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~~~~~~ 520 (667)
..+.++|.++... ...+. .........++..++.-..+.....-|.|++||+.++.+...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 1367888876432 11111 001234456777888888888889999999999999876443
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.46 E-value=10 Score=38.41 Aligned_cols=145 Identities=10% Similarity=0.013 Sum_probs=75.5
Q ss_pred eCCCcEEEEecCCCeEeEEee-----CCCcEEEEEEee-C-------CCCEEEEEecCCeEEEEecCCCeEEEecccCCc
Q 005956 327 SMDKTVRMWQVGCNQCLNVFD-----HHNYVTCVQFNP-I-------DDNYFISGSIDGKVRIWGVCEKRVVDWADVRDV 393 (667)
Q Consensus 327 s~Dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p-~-------d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~~~~ 393 (667)
+.||.|..++..+|.....+. ...++.. .-.| . .+..+++|+.++++...|+.+|+.+........
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 589999999988886554443 2223322 1000 0 356889999999999999999998864443321
Q ss_pred e--------EEEEEe-----eCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccC-cCCCCe-EEEEEccCCCeEEEE
Q 005956 394 I--------SAICYI-----PDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-TSGNKI-TGIQFSRDESQRIMI 458 (667)
Q Consensus 394 v--------~~v~~s-----pdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-~~~~~I-~~l~~sp~g~~~l~~ 458 (667)
. .|.... -.+..++.|..+..+.+.+ +++. .. ...+..... .....+ .....+.++ .+ ++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W-~~~~s~~~~~~~~~~~~~~~~~s~Dg-~~-~~ 217 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SY-NVTYSTWQQNVLDVPLALQNTFSKDG-MC-IA 217 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC-CC-CCEEEEEECCTTTHHHHTTCSSCSSS-CC-EE
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eE-EEecccccccccccccccccccccCC-cE-EE
Confidence 1 111111 1245677777777777766 3332 11 111100000 000000 000011233 33 55
Q ss_pred EeCCCcEEEEECCcceeeE
Q 005956 459 TSEDSKLRILDGVDVIHKF 477 (667)
Q Consensus 459 ~s~dg~I~iwd~~~~~~~~ 477 (667)
++.||.|.-+|........
T Consensus 218 ~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 218 PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EETTTEEEEECSTTCCEEE
T ss_pred ECCCCEEEEEECCCCcEEE
Confidence 7888888888876555444
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.79 E-value=11 Score=37.33 Aligned_cols=174 Identities=10% Similarity=0.111 Sum_probs=88.5
Q ss_pred cEEEEecCCCeEeEEe-eC--CCcEEEEEEeeCCCCEEEEEec----CC-------eEEEEecCCCeEEEecccCCc--e
Q 005956 331 TVRMWQVGCNQCLNVF-DH--HNYVTCVQFNPIDDNYFISGSI----DG-------KVRIWGVCEKRVVDWADVRDV--I 394 (667)
Q Consensus 331 ~I~iWd~~~~~~~~~~-~h--~~~V~~l~f~p~d~~~l~sgs~----Dg-------~v~iwdl~~~~~~~~~~~~~~--v 394 (667)
.+.+||..+++-...- .. ...-.+++ .. ++.+++.|+. ++ .+.+||..+.+-......... -
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 3788999888754421 11 11222332 23 6788888873 11 277889988776553322211 1
Q ss_pred EEEEEeeCCCEEEEEecC-------CcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeC------
Q 005956 395 SAICYIPDGKGFIVGSIT-------GTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSE------ 461 (667)
Q Consensus 395 ~~v~~spdg~~l~~gs~d-------g~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~------ 461 (667)
.+++. -+++.++.|+.+ ..+.+||..+....... .+.... .... ++. .+ +.+++.|+.
T Consensus 103 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r----~~~~-~~~-~~-~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-NLPIKV----YGHN-VIS-HN-GMIYCLGGKTDDKKC 173 (318)
T ss_dssp CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-CCSSCE----ESCE-EEE-ET-TEEEEECCEESSSCB
T ss_pred cceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-CCCCcc----cccE-EEE-EC-CEEEEEcCCCCCCCc
Confidence 12222 367778888764 24778888776554321 111100 1111 222 23 356666653
Q ss_pred CCcEEEEECCcceee-EEeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005956 462 DSKLRILDGVDVIHK-FKGLPKSGSQMSASFTTTGKHIISIGDD-----CRVYVWNYDELC 516 (667)
Q Consensus 462 dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~D-----g~I~iWd~~~~~ 516 (667)
-..+.+||..+..-. .........-.+++. -+++.++.|+.+ ..+.+||+.+..
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 246899997643221 111111111112222 356777777643 357788887764
No 343
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.65 E-value=11 Score=38.86 Aligned_cols=156 Identities=9% Similarity=-0.023 Sum_probs=78.6
Q ss_pred cceEEEEecC--CCeEEEEeCCC----cEEEEecCCCeEeEEee---------------CCCcEEEEEEeeCC-CCEEEE
Q 005956 310 GDVLDLAWSN--SNYLLSCSMDK----TVRMWQVGCNQCLNVFD---------------HHNYVTCVQFNPID-DNYFIS 367 (667)
Q Consensus 310 ~~V~~l~~s~--~~~l~s~s~Dg----~I~iWd~~~~~~~~~~~---------------h~~~V~~l~f~p~d-~~~l~s 367 (667)
..|.+|++.| .+.|..++..+ .|...+ +.++.-..+. ....|.++++.|.+ ...++.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999988 45555555544 343332 2232222221 11257889998744 566777
Q ss_pred EecCCeEEEEecCCCeEEEecc-------------------cCCceEEEEEee-CCCEEEEEecCCcEEEEEecCCccee
Q 005956 368 GSIDGKVRIWGVCEKRVVDWAD-------------------VRDVISAICYIP-DGKGFIVGSITGTCHFYKASGNDLKL 427 (667)
Q Consensus 368 gs~Dg~v~iwdl~~~~~~~~~~-------------------~~~~v~~v~~sp-dg~~l~~gs~dg~i~l~d~~~~~~~~ 427 (667)
+...+.|...+-....-..... ....+.+|.++| +...+++++..+.+... .......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW 211 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDW 211 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSC
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCc
Confidence 6666666555332222222111 123578899988 34566666655544333 3222211
Q ss_pred eeEee--cccc-C----cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEE
Q 005956 428 EKVDF--HDRK-K----TSGNKITGIQFSRDESQRIMITSEDSKLRILD 469 (667)
Q Consensus 428 ~~~~~--~~~~-~----~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd 469 (667)
..+.. .... . .....+..+.+.|.+...|+++...+ |...+
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 11110 0000 0 00134889999987445677776555 44443
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.33 Score=49.54 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCeEEEEeCCCcEEEEecCCCeEeEEeeCC--CcEEEEEEe--eCCCCEEEEE-ecCCeEEEEecCCCeEEEecccCCce
Q 005956 320 SNYLLSCSMDKTVRMWQVGCNQCLNVFDHH--NYVTCVQFN--PIDDNYFISG-SIDGKVRIWGVCEKRVVDWADVRDVI 394 (667)
Q Consensus 320 ~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~--p~d~~~l~sg-s~Dg~v~iwdl~~~~~~~~~~~~~~v 394 (667)
++.++.++.||.|.-.|..+|+.+..+... .++....-. +.++..++.. +.||.|..++..++...........+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 358899999999999999999999988743 233221111 1122333333 58999999999887543211111111
Q ss_pred E--EEEEe-----------eCCCEEEEEecCCcEEEEEecCCcceee
Q 005956 395 S--AICYI-----------PDGKGFIVGSITGTCHFYKASGNDLKLE 428 (667)
Q Consensus 395 ~--~v~~s-----------pdg~~l~~gs~dg~i~l~d~~~~~~~~~ 428 (667)
. -+... ..+..+++|+.+|.+.-.|+.+++....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~ 136 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA 136 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 0 01110 1456888999999999999999887654
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.22 E-value=13 Score=41.88 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=81.8
Q ss_pred CC-eEEEEeCC------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEecCC--eEEEEecCCCeEEEec
Q 005956 320 SN-YLLSCSMD------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDG--KVRIWGVCEKRVVDWA 388 (667)
Q Consensus 320 ~~-~l~s~s~D------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg--~v~iwdl~~~~~~~~~ 388 (667)
++ .++.|+.+ ..+.+||..+.+-...-. ....-.+++... ++.+++.|+.++ .+.+||+.+.+-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 56666643 357889988865443322 111112233323 678888888765 6999999988755433
Q ss_pred c------cCCceEEEEEeeC-CCEEEEEec--C-----CcEEEEEecCCcc----eeeeEeeccccCcCCCCeEEEEEcc
Q 005956 389 D------VRDVISAICYIPD-GKGFIVGSI--T-----GTCHFYKASGNDL----KLEKVDFHDRKKTSGNKITGIQFSR 450 (667)
Q Consensus 389 ~------~~~~v~~v~~spd-g~~l~~gs~--d-----g~i~l~d~~~~~~----~~~~~~~~~~~~~~~~~I~~l~~sp 450 (667)
. ......++.+..+ ++.++.|+. + ..+.+||+.+... ....+... ..........+ ...
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~-~~~ 606 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIK-YIT 606 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEE-EEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEE-EeC
Confidence 2 2222344555555 667777775 2 4588999988772 01111110 00111122223 333
Q ss_pred CCCeEEEEEeC--------CCcEEEEECCcc
Q 005956 451 DESQRIMITSE--------DSKLRILDGVDV 473 (667)
Q Consensus 451 ~g~~~l~~~s~--------dg~I~iwd~~~~ 473 (667)
++ .+++.|+. ...|.+||..+.
T Consensus 607 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 607 PR-KLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp TT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 23 67777763 346899997743
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.73 E-value=4 Score=46.00 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=81.9
Q ss_pred eEEEEeCC----CcEEEEecCCCeEeEEe-e-------CC-CcEEEEEEeeCCCCEEEEEecC------CeEEEEecCCC
Q 005956 322 YLLSCSMD----KTVRMWQVGCNQCLNVF-D-------HH-NYVTCVQFNPIDDNYFISGSID------GKVRIWGVCEK 382 (667)
Q Consensus 322 ~l~s~s~D----g~I~iWd~~~~~~~~~~-~-------h~-~~V~~l~f~p~d~~~l~sgs~D------g~v~iwdl~~~ 382 (667)
.++.|+.+ ..+.+||..+++-...- . .. ..-..+.+.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 66666643 46888998877644433 1 11 1222333321 46677777754 35889999887
Q ss_pred eEEEecccCC--ceEEEEEeeCCCEEEEEecCC--cEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 383 RVVDWADVRD--VISAICYIPDGKGFIVGSITG--TCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 383 ~~~~~~~~~~--~v~~v~~spdg~~l~~gs~dg--~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
+-........ .-.+++...+++.++.|+.++ .+.+||..++...... ..+...........+.+..+.+.+++.
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~--~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT--PKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC--CSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc--CCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 6554332211 122333324788888888655 6899999877654321 111011111223345555542367777
Q ss_pred EeC--C-----CcEEEEECCcc
Q 005956 459 TSE--D-----SKLRILDGVDV 473 (667)
Q Consensus 459 ~s~--d-----g~I~iwd~~~~ 473 (667)
|+. + +.+.+||+.+.
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTT
T ss_pred CCcCCCCCeeeCcEEEEEccCC
Confidence 765 2 45888986643
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.29 E-value=28 Score=35.58 Aligned_cols=146 Identities=8% Similarity=-0.026 Sum_probs=70.4
Q ss_pred cceEEEEecC---CCeEEEEeCCCcEEEEecCCCeEeEEee--------------------CCCcEEEEEEeeCCCCEEE
Q 005956 310 GDVLDLAWSN---SNYLLSCSMDKTVRMWQVGCNQCLNVFD--------------------HHNYVTCVQFNPIDDNYFI 366 (667)
Q Consensus 310 ~~V~~l~~s~---~~~l~s~s~Dg~I~iWd~~~~~~~~~~~--------------------h~~~V~~l~f~p~d~~~l~ 366 (667)
..|.+|++.| .+.|..++..+.|...+= .++.-..+. ....+.+|.+.|.+.+.++
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 3578888875 346666655555544422 222222221 1235789999874455566
Q ss_pred EEecCCeEEEEecCCCeEEEecc-c------------CCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEee
Q 005956 367 SGSIDGKVRIWGVCEKRVVDWAD-V------------RDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDF 432 (667)
Q Consensus 367 sgs~Dg~v~iwdl~~~~~~~~~~-~------------~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~ 432 (667)
.+..++.|...+-....-..... . ...+.++.++|+ ...|++++..| |...+ ........+..
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~--D~G~tW~~~~~ 270 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD--RREGVWKRIGD 270 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE--TTTTEEECGGG
T ss_pred EEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC--CCCCcceECCC
Confidence 66555545444322222211111 0 124888999985 46777776554 43333 22222111110
Q ss_pred ccccCcCCCCeEEEEEccCCCeEEEEEe
Q 005956 433 HDRKKTSGNKITGIQFSRDESQRIMITS 460 (667)
Q Consensus 433 ~~~~~~~~~~I~~l~~sp~g~~~l~~~s 460 (667)
.........+..+.+.|.....|+++.
T Consensus 271 -~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 271 -AMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp -GSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred -CCCCCCccceEEEEECCCCCCEEEEEe
Confidence 000000133567888764334455543
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.79 E-value=16 Score=36.82 Aligned_cols=91 Identities=11% Similarity=0.225 Sum_probs=48.2
Q ss_pred CC-eEEEEeC-CCcEEEEecCC--CeEeEEeeCC--C-cEEEEEEeeCCCCEEEEEec-C---------CeEEEEecCCC
Q 005956 320 SN-YLLSCSM-DKTVRMWQVGC--NQCLNVFDHH--N-YVTCVQFNPIDDNYFISGSI-D---------GKVRIWGVCEK 382 (667)
Q Consensus 320 ~~-~l~s~s~-Dg~I~iWd~~~--~~~~~~~~h~--~-~V~~l~f~p~d~~~l~sgs~-D---------g~v~iwdl~~~ 382 (667)
++ .++.|+. ...+.++|..+ .+-...-... . .-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 45 4555554 35688889864 3222211111 1 11122222 5777777776 2 46899999988
Q ss_pred eEEEecccC--CceEEEEEeeCCCEEEEEecC
Q 005956 383 RVVDWADVR--DVISAICYIPDGKGFIVGSIT 412 (667)
Q Consensus 383 ~~~~~~~~~--~~v~~v~~spdg~~l~~gs~d 412 (667)
+-....... ......+...+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 755433222 111122222677888888754
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.49 E-value=26 Score=34.28 Aligned_cols=182 Identities=12% Similarity=0.015 Sum_probs=95.3
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE-EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEEEec
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 388 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~-~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~ 388 (667)
.|..++......++. . ||.|..|-....-.+. -......|..++... ...+.-. ||.|+.|-... +++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 466666554444444 4 8888888654321111 111234677777753 3444445 99999997654 2221112
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
.....|..++... .+.++-. +|.+..|-......... . ......|..++.... ..++. .||.|+.|
T Consensus 138 ~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~--p-----~~~~~~v~~i~~G~~--hs~al--~~G~v~~w 203 (282)
T 3qhy_B 138 EAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTV--P-----AEAQSGVDDVAGGIF--HSLAL--KDGKVIAW 203 (282)
T ss_dssp GGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSC--C-----GGGGSSEEEEEECSS--EEEEE--ETTEEEEE
T ss_pred cCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCC--c-----eecCCCeEEEEecCC--EEEEE--ECCeEEEE
Confidence 2234466665433 2333334 78888887654322211 0 011256888877654 34444 59999999
Q ss_pred ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
-....-+.-........|..++..... .++. . ||.|+.|-....
T Consensus 204 G~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 204 GDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp ECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred ECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 644211110000122346666655433 2333 3 899999976553
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.12 E-value=30 Score=34.72 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=88.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeeCCCCCccccCCCCeEEecccCCCCceeecCCCcccccCCcceeeeccccce
Q 005956 233 DGRYLASGGEDGVVRIWHVTSVAASCKSFTDDGGFGSNAKEGKIKFGKKKSSHVPVVIPDEVFQIEESPLQELHGHKGDV 312 (667)
Q Consensus 233 dg~~Latgs~Dg~I~vWdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V 312 (667)
+..++++++.+|.|+--.+....... .. +.....+... +.+
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~-------------r~-------------------------G~~~i~lke~-D~l 148 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNR-------------SG-------------------------GIVAVNLRDN-DEL 148 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCC-------------SS-------------------------CEESCBCCTT-CCE
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccc-------------cC-------------------------ceEEEEECCC-CEE
Confidence 57899999999999998877522100 00 0011122222 233
Q ss_pred EEEEe-cCCCeEEEEeCCCcEEEEecC--C---------CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC
Q 005956 313 LDLAW-SNSNYLLSCSMDKTVRMWQVG--C---------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC 380 (667)
Q Consensus 313 ~~l~~-s~~~~l~s~s~Dg~I~iWd~~--~---------~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~ 380 (667)
..+.. ..+..|+..+..|.+..+.+. . |.....+.....|.++...+ .+.+++..+..|.++.-.+.
T Consensus 149 v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 149 VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHH
Confidence 33333 333377777788887777665 2 11111223556777777666 56789999999999988764
Q ss_pred CCe--------EE--EecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecC
Q 005956 381 EKR--------VV--DWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASG 422 (667)
Q Consensus 381 ~~~--------~~--~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~ 422 (667)
.-. +. ......+.+..+....+...++..+.+|.+..+....
T Consensus 228 e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 228 EYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 321 11 1222134455554445566788888999888887754
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.69 E-value=48 Score=35.85 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=109.3
Q ss_pred CC-eEEEEe-CCCcEEEEecCCCeEeEEee--CCCcEEEEEEe--eCCCCEEEEEec-------CCeE------------
Q 005956 320 SN-YLLSCS-MDKTVRMWQVGCNQCLNVFD--HHNYVTCVQFN--PIDDNYFISGSI-------DGKV------------ 374 (667)
Q Consensus 320 ~~-~l~s~s-~Dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~--p~d~~~l~sgs~-------Dg~v------------ 374 (667)
|| +|+.-. .+..|-..+++..++-+.+. ....+.++.|. | +..|++.++. ||..
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 44 455444 45567777888888776664 66788888887 5 6667777653 2221
Q ss_pred EEEecCCCeEEEecccCCceEEEEEeeCCCEEEEEecCC---------------cEEEEEecC-------Ccce------
Q 005956 375 RIWGVCEKRVVDWADVRDVISAICYIPDGKGFIVGSITG---------------TCHFYKASG-------NDLK------ 426 (667)
Q Consensus 375 ~iwdl~~~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg---------------~i~l~d~~~-------~~~~------ 426 (667)
...|..+.++.......+....+...++|++.++.+.+. .+.++++.. ++..
T Consensus 220 ~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 112333333322111223344455677888877766432 355666531 1110
Q ss_pred eeeEeecccc--C-------cCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCccee-----------e-EEeCCCCCC
Q 005956 427 LEKVDFHDRK--K-------TSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDVIH-----------K-FKGLPKSGS 485 (667)
Q Consensus 427 ~~~~~~~~~~--~-------~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~~~-----------~-~~~~~~~~~ 485 (667)
...+....+. . ........+..+|||...++.+--+.++.|+|..+... . ..-..-...
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG 379 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG 379 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence 0011111000 0 01133457889999865566666788999999764211 1 111113456
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 486 QMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 486 v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
....+|.++|.-..|---|..|.-|+++..
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 788999999944444558999999999753
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.88 E-value=18 Score=38.36 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=61.6
Q ss_pred CceEEEEEeeCCC-EEEEEecCCcEEEEEecCCcceeeeEeeccccC-----cCCCCeEEEEEccC---CCeEEEEEeC-
Q 005956 392 DVISAICYIPDGK-GFIVGSITGTCHFYKASGNDLKLEKVDFHDRKK-----TSGNKITGIQFSRD---ESQRIMITSE- 461 (667)
Q Consensus 392 ~~v~~v~~spdg~-~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~-----~~~~~I~~l~~sp~---g~~~l~~~s~- 461 (667)
.....|+|.|||. .|+++...|.|++++............+..... ........|+|+|+ +..+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567899999996 577778899999997543211111111111111 11356789999996 2233333221
Q ss_pred -C----------CcEEEEECC----------cceeeEEe--CCCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 462 -D----------SKLRILDGV----------DVIHKFKG--LPKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 462 -d----------g~I~iwd~~----------~~~~~~~~--~~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
+ ..|.-|.+. .....+.. .........++|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 133334432 11122221 1223456789999999887777654
No 353
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=81.55 E-value=0.62 Score=30.67 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.7
Q ss_pred CCCCCcccceeeccccccc
Q 005956 3 SSDEGVDDVFFDSTDCLSF 21 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (667)
.|||+||-+|||+.+-|..
T Consensus 12 ~SdEDed~EfFDA~efITv 30 (47)
T 2rr3_B 12 MSDEDDENEFFDAPEIITM 30 (47)
T ss_dssp SCCCCCSSCCBCCCSSCSS
T ss_pred ccccccccccccccceeEc
Confidence 4799999999999886653
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.60 E-value=61 Score=34.17 Aligned_cols=29 Identities=24% Similarity=0.097 Sum_probs=21.6
Q ss_pred ccEEEEEEcCCCC-EEEEEECCCcEEEEEc
Q 005956 223 GCIWTLKFSPDGR-YLASGGEDGVVRIWHV 251 (667)
Q Consensus 223 ~~I~~v~fspdg~-~Latgs~Dg~I~vWdv 251 (667)
..-+.|+|.|||. .|+.+...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 3467999999996 4445567898888864
No 355
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.46 E-value=48 Score=32.24 Aligned_cols=192 Identities=8% Similarity=0.046 Sum_probs=106.3
Q ss_pred eEEEEeCCCcEEE---EecCCCeEeEEeeCCCcEEEEEEeeC-CCCEEEEEecCCeEEEEecCCCe------EEEecccC
Q 005956 322 YLLSCSMDKTVRM---WQVGCNQCLNVFDHHNYVTCVQFNPI-DDNYFISGSIDGKVRIWGVCEKR------VVDWADVR 391 (667)
Q Consensus 322 ~l~s~s~Dg~I~i---Wd~~~~~~~~~~~h~~~V~~l~f~p~-d~~~l~sgs~Dg~v~iwdl~~~~------~~~~~~~~ 391 (667)
.|+.-+.+|.++- |++........+.....|..+.. +. ++.+++..+.+|.++-..+..-. ........
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg 115 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG 115 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC
Confidence 5666666666553 33332211111445556766644 32 46789999999999999875432 11112234
Q ss_pred CceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEEC
Q 005956 392 DVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDG 470 (667)
Q Consensus 392 ~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~ 470 (667)
+.+..+........++..+..|.+..+....-..... ..............|..+...+++ ..++..+..|.++...+
T Consensus 116 D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 116 DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE-PYLLVITAKGRVKKISH 194 (276)
T ss_dssp CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC-SEEEEEETTSCEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC-CEEEEEeCCCcEEEeEH
Confidence 5566665555667899999999998887653221100 000001111223567766655543 57888899999988875
Q ss_pred CcceeeE------EeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE--EEcCCC
Q 005956 471 VDVIHKF------KGLPKSGSQMSASFTTTGKHIISIGDDCRVYV--WNYDEL 515 (667)
Q Consensus 471 ~~~~~~~------~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~i--Wd~~~~ 515 (667)
.+....- ........+..+....+...|+..+.+|.+.. ++...-
T Consensus 195 ~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 195 EEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp GGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred HHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 4321110 00012344554444334456666677787777 776543
No 356
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.04 E-value=61 Score=33.20 Aligned_cols=169 Identities=7% Similarity=0.057 Sum_probs=98.8
Q ss_pred cEEEEecCCC--eEeEEee-------CCCcEEEEEEeeC--C----CCEEEEEe-cCCeEEEEecCCCeEEEecc----c
Q 005956 331 TVRMWQVGCN--QCLNVFD-------HHNYVTCVQFNPI--D----DNYFISGS-IDGKVRIWGVCEKRVVDWAD----V 390 (667)
Q Consensus 331 ~I~iWd~~~~--~~~~~~~-------h~~~V~~l~f~p~--d----~~~l~sgs-~Dg~v~iwdl~~~~~~~~~~----~ 390 (667)
.|.+||+.++ +.++.+. ....+..+++... + +.+++.+. ..+-|.++|+.+++..+... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 9988875 2346888888721 1 33444433 46779999999887654331 0
Q ss_pred ---------------CCceEEEEEeeC----CCEEEEEecCCcEEEEEecCCcce----eeeEeeccccCcCCCCeEEEE
Q 005956 391 ---------------RDVISAICYIPD----GKGFIVGSITGTCHFYKASGNDLK----LEKVDFHDRKKTSGNKITGIQ 447 (667)
Q Consensus 391 ---------------~~~v~~v~~spd----g~~l~~gs~dg~i~l~d~~~~~~~----~~~~~~~~~~~~~~~~I~~l~ 447 (667)
...+..++++|+ ++.|......+. ++|.+.+..+. ...+...+.+ .....-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeec-CCCCCcceEE
Confidence 235778888887 777777665543 44544422111 1122222221 1113344566
Q ss_pred EccCCCeEEEEEeCCCcEEEEECCc-ce-----eeEEeCCCCCCeEEEEEcCCCCEEEEE
Q 005956 448 FSRDESQRIMITSEDSKLRILDGVD-VI-----HKFKGLPKSGSQMSASFTTTGKHIISI 501 (667)
Q Consensus 448 ~sp~g~~~l~~~s~dg~I~iwd~~~-~~-----~~~~~~~~~~~v~~v~~spdg~~l~sg 501 (667)
+.+..+.++++--..+.|..|+... .. ..+.....-..+..+.+..+|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 7533236777777888999999765 21 222222244566777776666544443
No 357
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.54 E-value=72 Score=31.77 Aligned_cols=197 Identities=9% Similarity=0.063 Sum_probs=105.4
Q ss_pred CCCeEEEEeCCCcEEEEec---C------CCeEeEE---eeCCCcEEEEEEeeC--CCCEEEEEecCCeEEEEecCC---
Q 005956 319 NSNYLLSCSMDKTVRMWQV---G------CNQCLNV---FDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCE--- 381 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~---~------~~~~~~~---~~h~~~V~~l~f~p~--d~~~l~sgs~Dg~v~iwdl~~--- 381 (667)
....|+..+..|.+.-..+ . .|.++.. +.....|..+...+. ++.+++.++.+|.++-..+..
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~ 128 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKA 128 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhh
Confidence 3336666667776555443 2 2232211 223445665543331 256889999999999987742
Q ss_pred -----CeEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 382 -----KRVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 382 -----~~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
+.........+.+..+........++..+.+|.+..+....-..... ..............|.++...+++...
T Consensus 129 ~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ 208 (323)
T 1wp5_A 129 QRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDES 208 (323)
T ss_dssp SCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCE
T ss_pred ccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcE
Confidence 11111112235555555555667889999999999888764221110 000111111224567776554443326
Q ss_pred EEEEeCCCcEEEEECCcc---------eeeEEeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 456 IMITSEDSKLRILDGVDV---------IHKFKGL-PKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~---------~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
+++.+..|..+..++... ...++.. .....+..+....++..|+..+..|.+....+..-
T Consensus 209 ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i 278 (323)
T 1wp5_A 209 IVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI 278 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred EEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence 888888888887775431 1112111 12224544333334456666777887776676553
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.28 E-value=78 Score=31.59 Aligned_cols=147 Identities=9% Similarity=0.100 Sum_probs=88.5
Q ss_pred CeEEEEeCCCcEEEEecCCCe-------EeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecC--CCeE-------
Q 005956 321 NYLLSCSMDKTVRMWQVGCNQ-------CLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVC--EKRV------- 384 (667)
Q Consensus 321 ~~l~s~s~Dg~I~iWd~~~~~-------~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~--~~~~------- 384 (667)
.+++..+.+|.|+--.+.... ....+...+.+..+.... ....++..+..|.+..+... .-..
T Consensus 110 ~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 110 PYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC
T ss_pred CEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCC
Confidence 389999999999988765422 122233455666665555 56678888899998888766 2111
Q ss_pred EE--ecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee----eEeeccccCcCCCCeEEEEEccCCCeEEEE
Q 005956 385 VD--WADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE----KVDFHDRKKTSGNKITGIQFSRDESQRIMI 458 (667)
Q Consensus 385 ~~--~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~----~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~ 458 (667)
+. -....+.|.++...+++..+++.+..|.++.-.+........ ...+. .......+..+....+ ...++.
T Consensus 189 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~--l~~~~d~lv~~~~~~~-~~~i~l 265 (327)
T 3uc1_A 189 VQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM--YDRRRGRLVGALIVDD-DSELYA 265 (327)
T ss_dssp EESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC--CCTTTCSEEEEEEECT-TCEEEE
T ss_pred eeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE--ecCCCCeEEEEEEeCC-CccEEE
Confidence 11 122345577776666677999999999999888764433211 11111 1111234555444433 246677
Q ss_pred EeCCCcEEEEECC
Q 005956 459 TSEDSKLRILDGV 471 (667)
Q Consensus 459 ~s~dg~I~iwd~~ 471 (667)
.+.+|.+.-++..
T Consensus 266 ~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 266 VTSGGGVIRTAAR 278 (327)
T ss_dssp EEGGGCEEEEEGG
T ss_pred EcCCCeEEEEehh
Confidence 7777777777643
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=72.85 E-value=1.3e+02 Score=33.76 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=96.7
Q ss_pred eEEEE-ecCCC--eEEEEeCCC----cEEEEecCCCeEeEE-eeCCC--------cEEEEEEeeCCCCEEEEEe------
Q 005956 312 VLDLA-WSNSN--YLLSCSMDK----TVRMWQVGCNQCLNV-FDHHN--------YVTCVQFNPIDDNYFISGS------ 369 (667)
Q Consensus 312 V~~l~-~s~~~--~l~s~s~Dg----~I~iWd~~~~~~~~~-~~h~~--------~V~~l~f~p~d~~~l~sgs------ 369 (667)
...+. ++|++ .+++-|..| +|+++|+.+++.+.- |.... ....++|.. ++.++++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence 33444 78888 444444433 799999999987631 11000 113458875 444444321
Q ss_pred ----cCCeEEEEecCCC----eEEEecccCCceEEEEEeeCCCE-----EEEEecC---CcEEEEEecCCcceeeeEeec
Q 005956 370 ----IDGKVRIWGVCEK----RVVDWADVRDVISAICYIPDGKG-----FIVGSIT---GTCHFYKASGNDLKLEKVDFH 433 (667)
Q Consensus 370 ----~Dg~v~iwdl~~~----~~~~~~~~~~~v~~v~~spdg~~-----l~~gs~d---g~i~l~d~~~~~~~~~~~~~~ 433 (667)
.-.+|+.|.+-+. .++.-............++++++ ++..+.+ ..+.+.+.....-....+...
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 1256888877653 23322222232334555667663 3332212 334555544322221222111
Q ss_pred cccCcCCCCeEEEEEccCCCeEEEEE----------eCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCC
Q 005956 434 DRKKTSGNKITGIQFSRDESQRIMIT----------SEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTT 494 (667)
Q Consensus 434 ~~~~~~~~~I~~l~~sp~g~~~l~~~----------s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spd 494 (667)
. . ..+..+.++ .+++.. ...+.|.+.|+.... ..+-.......+..+.+..+
T Consensus 290 ~-------~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 290 S-------D-ATLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp T-------T-CEEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred C-------c-ceEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 1 1 112334443 444432 246678888876431 12222223456778888765
Q ss_pred CCEEEEEeCCC--cEEEEEcCCC
Q 005956 495 GKHIISIGDDC--RVYVWNYDEL 515 (667)
Q Consensus 495 g~~l~sgs~Dg--~I~iWd~~~~ 515 (667)
.++++...++ .|+++++.++
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETT
T ss_pred -EEEEEEEECCEEEEEEEECCCC
Confidence 5777777776 4677777655
No 360
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=72.71 E-value=91 Score=35.37 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=83.7
Q ss_pred CCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc-------CCceEEEEEeeC-CCEEEEEecCCc----EE
Q 005956 349 HNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-------RDVISAICYIPD-GKGFIVGSITGT----CH 416 (667)
Q Consensus 349 ~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~-------~~~v~~v~~spd-g~~l~~gs~dg~----i~ 416 (667)
...|.+|+++|.+...++.+...+.|...+=....-...... ...+.+|+++|. .+.++++..... -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999997678888888777776654332222222221 246999999984 345555543322 45
Q ss_pred EEEecCCcceeeeEeeccccC---cCCCCeEEEEEccCCCeEEEEEeCCCcEEEE-ECCcceeeEEeC----CCCCCeEE
Q 005956 417 FYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKGL----PKSGSQMS 488 (667)
Q Consensus 417 l~d~~~~~~~~~~~~~~~~~~---~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw-d~~~~~~~~~~~----~~~~~v~~ 488 (667)
||...+.-.....+....... .....+..+++.|.+...++++...+.|..= |..+--...... .....+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 555544433333332211000 0011356788888655677777644444332 221111111110 11245778
Q ss_pred EEEcCC-CCEEEEEeCC-CcEE
Q 005956 489 ASFTTT-GKHIISIGDD-CRVY 508 (667)
Q Consensus 489 v~~spd-g~~l~sgs~D-g~I~ 508 (667)
+.++|. +..|+.+..+ +.|+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEE
T ss_pred EEECCCCCCEEEEEEcCCCeEE
Confidence 888874 4466666554 4443
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.68 E-value=61 Score=37.76 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=31.9
Q ss_pred cceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee
Q 005956 310 GDVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD 347 (667)
Q Consensus 310 ~~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~ 347 (667)
..|.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356677777666 99999999999999999999988764
No 362
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=68.47 E-value=17 Score=39.31 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=69.8
Q ss_pred cceEEEEecCCC-e-EEEEeCCCcEEEEecCCC------eE-------eEEeeCCCcEEEEEEeeCCCCEEEEEecCCeE
Q 005956 310 GDVLDLAWSNSN-Y-LLSCSMDKTVRMWQVGCN------QC-------LNVFDHHNYVTCVQFNPIDDNYFISGSIDGKV 374 (667)
Q Consensus 310 ~~V~~l~~s~~~-~-l~s~s~Dg~I~iWd~~~~------~~-------~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v 374 (667)
.....+..+||| + ++++-.+.+|.++|+..- +. .......-.....+|.+ +++...+.-.|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 445677889999 4 445566889999998731 11 22223455678889999 88767777789999
Q ss_pred EEEecCCC----------eEEEecccCCceEEEEE------eeCCCEEEEEec
Q 005956 375 RIWGVCEK----------RVVDWADVRDVISAICY------IPDGKGFIVGSI 411 (667)
Q Consensus 375 ~iwdl~~~----------~~~~~~~~~~~v~~v~~------spdg~~l~~gs~ 411 (667)
.-|++... .++...+.+..+-.+.- .|||++|++...
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 99998753 35544455555555544 579999998763
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.99 E-value=99 Score=29.91 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=90.4
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEE---ecCCCeEEEecccCCceEEEEEee--CCCEEEEEecCCcEEEEEecCCcc
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIW---GVCEKRVVDWADVRDVISAICYIP--DGKGFIVGSITGTCHFYKASGNDL 425 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iw---dl~~~~~~~~~~~~~~v~~v~~sp--dg~~l~~gs~dg~i~l~d~~~~~~ 425 (667)
.+..+.-.. ...+|+.-+.+|.++-- ++....-..+......|.++.. + +...+++.+.+|.++...+....
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 444443333 33445555556665543 3322211001233445555543 4 46789999999999999887653
Q ss_pred eeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc---------eeeEEeCCCCCCeEEEEEcCCCC
Q 005956 426 KLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGK 496 (667)
Q Consensus 426 ~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~v~~v~~spdg~ 496 (667)
.... ............+..+..... ...++..+..|.+..++..+. ...+.. .....|..+...+++.
T Consensus 102 ~~~~-G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~ 178 (276)
T 3no0_A 102 YKAQ-GMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEP 178 (276)
T ss_dssp TCST-TEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCS
T ss_pred hhcC-CeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCC
Confidence 1110 000111112356666655544 357888888999888874321 121222 2345666666656677
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 005956 497 HIISIGDDCRVYVWNYDELC 516 (667)
Q Consensus 497 ~l~sgs~Dg~I~iWd~~~~~ 516 (667)
+|+..+..|.++...+..-.
T Consensus 179 ~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 179 YLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp EEEEEETTSCEEEEEGGGSC
T ss_pred EEEEEeCCCcEEEeEHHHcc
Confidence 89999999999999876543
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=62.21 E-value=2e+02 Score=32.10 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred CcEEEEecCCCe--EeEEee--CCCcEEEEEEeeCCCC-----EEEEEecC---CeEEEEecCC--CeEEEecccCCceE
Q 005956 330 KTVRMWQVGCNQ--CLNVFD--HHNYVTCVQFNPIDDN-----YFISGSID---GKVRIWGVCE--KRVVDWADVRDVIS 395 (667)
Q Consensus 330 g~I~iWd~~~~~--~~~~~~--h~~~V~~l~f~p~d~~-----~l~sgs~D---g~v~iwdl~~--~~~~~~~~~~~~v~ 395 (667)
..|+.|.+.+.. -..+|. ....-......+ ++. .+++.+.+ ..+.+.|... ++...+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence 578899887653 333443 222223344455 555 34544422 4466667653 454444322221
Q ss_pred EEEEeeCCCEEEEE----------ecCCcEEEEEecCCc------ceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEE
Q 005956 396 AICYIPDGKGFIVG----------SITGTCHFYKASGND------LKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMIT 459 (667)
Q Consensus 396 ~v~~spdg~~l~~g----------s~dg~i~l~d~~~~~------~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~ 459 (667)
.+..+.++..++.. ...+.|...++.+.. .....+-.+. ....+..+.+..+ .++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~--~l~~~~ 366 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT----ANEVFNFISTTKD--RVFLAT 366 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC----TTEEEEEEEECSS--CEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC----CCCeEEEEEEECC--EEEEEE
Confidence 12344566555532 246778888887642 1111111111 1246788888876 477777
Q ss_pred eCCCc--EEEEECCcc---eee-EEeCCCCCCeEEEEEcCCCCE-EEEEeC---CCcEEEEEcC
Q 005956 460 SEDSK--LRILDGVDV---IHK-FKGLPKSGSQMSASFTTTGKH-IISIGD---DCRVYVWNYD 513 (667)
Q Consensus 460 s~dg~--I~iwd~~~~---~~~-~~~~~~~~~v~~v~~spdg~~-l~sgs~---Dg~I~iWd~~ 513 (667)
..++. |.++|+... ... +.. ...+.+....+++++.. +++.+. -+.++.+|+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKL-PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECC-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCC-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77764 666765322 222 222 22345666666777654 444432 3678888876
No 365
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=60.89 E-value=1.2e+02 Score=29.23 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=95.5
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeE-EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC-CeEEEec
Q 005956 311 DVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLN-VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE-KRVVDWA 388 (667)
Q Consensus 311 ~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~-~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~-~~~~~~~ 388 (667)
.|..++......++. . ||.|..|-....-.+. .......|..++... ...++. . ||.|+.|-... +++-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 466666554443333 4 8899988654321111 111233566676643 333333 4 89999997653 2221111
Q ss_pred ccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCCeEEEEEccCCCeEEEEEeCCCcEEEE
Q 005956 389 DVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNKITGIQFSRDESQRIMITSEDSKLRIL 468 (667)
Q Consensus 389 ~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iw 468 (667)
.....|..++... .+.++-+ +|.+..|-......... .......|..++.... ..++. . ||.|+.|
T Consensus 99 ~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~-------~~~~~~~i~~i~~G~~--~~~~l-~-~G~v~~w 164 (282)
T 3qhy_B 99 EARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTV-------PAEAQSGVTALDGGVY--TALAV-K-NGGVIAW 164 (282)
T ss_dssp GGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSC-------CGGGGSSEEEEEECSS--EEEEE-E-TTEEEEE
T ss_pred ccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCC-------CccCCCCeEEEEcccC--EEEEE-E-CCEEEEe
Confidence 2234566666543 3444445 99999997654322111 1111256777776554 33333 4 7999999
Q ss_pred ECCcceeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 469 DGVDVIHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 469 d~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
-....-+.-........|..++...+ +.+.- .||.|+.|-...
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCT
T ss_pred cCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCC
Confidence 74421110000011345777776543 33333 599999997654
No 366
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=58.30 E-value=2.3e+02 Score=31.61 Aligned_cols=112 Identities=9% Similarity=0.119 Sum_probs=63.9
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEeccc-------CCceEEEEEee-CCCEEEEEecC-------CcE
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWADV-------RDVISAICYIP-DGKGFIVGSIT-------GTC 415 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~~-------~~~v~~v~~sp-dg~~l~~gs~d-------g~i 415 (667)
.|..|+++|.+.+.++.+...+.|...+-....-..+... ...|.+|+++| +.+.++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 7899999996667788777667776665433333332221 23589999998 44555555432 135
Q ss_pred EEEEecCCcceeeeEeeccccC---cCCCCeEEEEEccCCCeEEEEEeCC
Q 005956 416 HFYKASGNDLKLEKVDFHDRKK---TSGNKITGIQFSRDESQRIMITSED 462 (667)
Q Consensus 416 ~l~d~~~~~~~~~~~~~~~~~~---~~~~~I~~l~~sp~g~~~l~~~s~d 462 (667)
.||...+.-.....+....... .....+..|++.|.++..|+++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 5666655444333332211000 0011346799998766677777643
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=57.84 E-value=1.5e+02 Score=29.17 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=107.0
Q ss_pred CCCeEEEEeCCCcEEEEec---C------CCeEeE---EeeCCCcEEEEEEee--CCCCEEEEEecCCeEEEEecCC---
Q 005956 319 NSNYLLSCSMDKTVRMWQV---G------CNQCLN---VFDHHNYVTCVQFNP--IDDNYFISGSIDGKVRIWGVCE--- 381 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~---~------~~~~~~---~~~h~~~V~~l~f~p--~d~~~l~sgs~Dg~v~iwdl~~--- 381 (667)
....|+..+..|.+.-..+ . .|..+. .+.....|..+...+ .++.+++..+.+|.++-..+..
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 131 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 131 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTT
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhc
Confidence 3346666677776555443 2 222221 123445566654421 1466788999999999987642
Q ss_pred ----CeE-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 382 ----KRV-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 382 ----~~~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
+.. +.+.. .+.+..+....+...++..+.+|.+..+....-..... ..............|.++...+++ ..
T Consensus 132 ~~r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~-~~ 209 (307)
T 1zi0_A 132 LRTAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD-GA 209 (307)
T ss_dssp CCTTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS-CE
T ss_pred cccCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC-CE
Confidence 111 12222 35555555555567888999999998888754221110 000011111224567777655443 56
Q ss_pred EEEEeCCCcEEEEECCcce---------eeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 456 IMITSEDSKLRILDGVDVI---------HKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
+++.+..|.++-.++.... ..++.......+..+....+...|+..+.+|.+.-.++..-
T Consensus 210 ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 210 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 8888889988888753221 11222122345555544334455666667787776666553
No 368
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=57.15 E-value=0.47 Score=37.39 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=43.5
Q ss_pred ccccccCCceEEeecccc--cccchhhhhhcCCC--CCCC---CcchhhhHhHHHHHHhhhcccch
Q 005956 120 ELEQDQMNECVVTLEGES--NGFSQSVDKFENPF--PECK---GVNIKKVKKLWKRIISMKKRNVE 178 (667)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 178 (667)
.|.++|.++++.++..|. +|++..+..|.+.. +... ......++|+|..++++|++-++
T Consensus 4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKImd 69 (88)
T 1uuj_A 4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVME 69 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 367788899999999995 88888888877743 2111 12237889999999999998543
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.00 E-value=2e+02 Score=29.18 Aligned_cols=192 Identities=11% Similarity=0.143 Sum_probs=111.0
Q ss_pred CCC-eEEEEeCCCcEEEEecCC---------CeEeEEeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEe---cCC----
Q 005956 319 NSN-YLLSCSMDKTVRMWQVGC---------NQCLNVFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWG---VCE---- 381 (667)
Q Consensus 319 ~~~-~l~s~s~Dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwd---l~~---- 381 (667)
++. ++++.+.+|.|+=-.+.. +.....+...+.+..+.... ....++..+..|.++-+. +..
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 444 788889999998764421 22333445666777766665 566777778888876654 322
Q ss_pred --CeEE-Ee--cccCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCC
Q 005956 382 --KRVV-DW--ADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDE 452 (667)
Q Consensus 382 --~~~~-~~--~~~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g 452 (667)
|..+ .. ......|.++..-. ++.+|+.++..|.++...+........ -+.... . .....+..+.....
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L-~~~d~lv~v~~~~~- 160 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-L-DEGDALVGVALTDG- 160 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-C-CTTCCEEEEEEECS-
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-e-CCCCEEEEEEEeCC-
Confidence 2111 11 12234455544332 456899999999999988764432211 111110 1 11345555555443
Q ss_pred CeEEEEEeCCCcEEEEECCc---------ceeeEEeCCCCCCeEEEEEcC------------------------------
Q 005956 453 SQRIMITSEDSKLRILDGVD---------VIHKFKGLPKSGSQMSASFTT------------------------------ 493 (667)
Q Consensus 453 ~~~l~~~s~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~sp------------------------------ 493 (667)
...|+..+.+|.+..++..+ .+..+.. .....|.++..-+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe-CCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 35788888888888786432 1222222 1344555555443
Q ss_pred -----CCCEEEEEeCCCcEEEEEcCCC
Q 005956 494 -----TGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 494 -----dg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
++.+|++.+..|..+...+..-
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGS
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHh
Confidence 4568999999999999887654
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.25 E-value=74 Score=37.04 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=30.9
Q ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEEcCCCceee
Q 005956 223 GCIWTLKFSPDGRYLASGGEDGVVRIWHVTSVAASC 258 (667)
Q Consensus 223 ~~I~~v~fspdg~~Latgs~Dg~I~vWdv~~~~~~~ 258 (667)
..|.+++..++..+|+|-+.|+++|||++.++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 367888888899999999999999999999876543
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.26 E-value=2e+02 Score=28.21 Aligned_cols=188 Identities=10% Similarity=0.109 Sum_probs=111.9
Q ss_pred eEEEEeCCCcEEEEecCCCeE-------eE--EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCC---C------e
Q 005956 322 YLLSCSMDKTVRMWQVGCNQC-------LN--VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCE---K------R 383 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~-------~~--~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~---~------~ 383 (667)
++++.+.+|.|+--.+...+. +. .+...+.+..+.... ....++..+..|.++-+.... . .
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 678888889888776543211 11 123445566665555 566778888899877765532 1 1
Q ss_pred ----EEEecccCCceEEEEEee---CCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeE
Q 005956 384 ----VVDWADVRDVISAICYIP---DGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQR 455 (667)
Q Consensus 384 ----~~~~~~~~~~v~~v~~sp---dg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~ 455 (667)
.+.+ ...+.|.++...+ +..+++..+..|.++...+........ -.... .......+..+....+ ...
T Consensus 89 ~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i--~L~~~d~lv~~~~~~~-~~~ 164 (312)
T 1suu_A 89 NISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI--KLNDKDFVTSAEIVFK-DEK 164 (312)
T ss_dssp BGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB--CCCTTCCEEEEEEECT-TCE
T ss_pred ChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE--ecCCCCEEEEEEEeCC-CCE
Confidence 1111 1233454443333 467899999999999888764322111 01111 1112456666665543 357
Q ss_pred EEEEeCCCcEEEEECCcc---------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 005956 456 IMITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDEL 515 (667)
Q Consensus 456 l~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~~ 515 (667)
++..+.+|.+..+...+. +..+... ....+.++..-.++..|++.+..|..+..++..-
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 888899999888875432 2222222 3456667666556778889999999999988654
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=44.48 E-value=2.6e+02 Score=28.21 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=107.4
Q ss_pred ceEEEEecCCC-eEEEEeCCCcEEEEe---cC------CCeEeEE---eeCCCcEEEEEEee--CCCCEEEEEecCCeEE
Q 005956 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQ---VG------CNQCLNV---FDHHNYVTCVQFNP--IDDNYFISGSIDGKVR 375 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd---~~------~~~~~~~---~~h~~~V~~l~f~p--~d~~~l~sgs~Dg~v~ 375 (667)
.+..+...... .|+..+..|.+.-+. +. .|..+.. +.....|.++.... ..+.+|+.++..|.++
T Consensus 47 ~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vK 126 (370)
T 3l6v_A 47 FIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVK 126 (370)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 34433333333 566666667655444 32 2222211 23445666654432 1356899999999999
Q ss_pred EEecCCCe-------E-EEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEE
Q 005956 376 IWGVCEKR-------V-VDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGI 446 (667)
Q Consensus 376 iwdl~~~~-------~-~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l 446 (667)
...+..-. . +.+ ...+.+..+........++..+..|.+..|....-..... ..............|.++
T Consensus 127 rt~l~e~~~~~~~G~~ai~L-~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~ 205 (370)
T 3l6v_A 127 KTPLSEFAFRLARGKIAINL-DEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSL 205 (370)
T ss_dssp EEEGGGGCSCCTTCEESSCC-CTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEE
T ss_pred EeEHHHhhcccCCceEEEEe-CCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEE
Confidence 98764321 1 122 2244555555555667899999999998888653221110 000011111123556665
Q ss_pred EEccC----------------------------------CCeEEEEEeCCCcEEEEECCcc---------eeeEEeCCCC
Q 005956 447 QFSRD----------------------------------ESQRIMITSEDSKLRILDGVDV---------IHKFKGLPKS 483 (667)
Q Consensus 447 ~~sp~----------------------------------g~~~l~~~s~dg~I~iwd~~~~---------~~~~~~~~~~ 483 (667)
...+. +...+++.+..|..+...+... +..++.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~ 285 (370)
T 3l6v_A 206 IVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN 285 (370)
T ss_dssp EEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTT
T ss_pred EEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCC
Confidence 55441 2357888899998888875422 2222222223
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 484 GSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 484 ~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+.+..+.+..+...|+..+..|.+.-..+..
T Consensus 286 g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 286 GKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 4555544434445566666677766666554
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.90 E-value=4.3e+02 Score=29.66 Aligned_cols=155 Identities=10% Similarity=0.071 Sum_probs=79.7
Q ss_pred ccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-C-------CCcEEEEEEeeCCCCEEEEEecCCe----E
Q 005956 309 KGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-H-------HNYVTCVQFNPIDDNYFISGSIDGK----V 374 (667)
Q Consensus 309 ~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-h-------~~~V~~l~f~p~d~~~l~sgs~Dg~----v 374 (667)
...|.+|+++|.+ .++.++..+.|...+= .++.-..+. + ...|.+|++.|.+.+.++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 3579999999864 6777777776655542 233322222 1 2369999999855556665543311 2
Q ss_pred EEE-ecCCCeEEEecc----------cCCceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEeeccccCcCCCC
Q 005956 375 RIW-GVCEKRVVDWAD----------VRDVISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVDFHDRKKTSGNK 442 (667)
Q Consensus 375 ~iw-dl~~~~~~~~~~----------~~~~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~~~~~~~~~~~~ 442 (667)
.|| ....++.-.... ....+..++++|. .+.++++...+. ||-..+.-.....+............
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 233 333443222111 0113566888874 456666664433 44443332222222110000011245
Q ss_pred eEEEEEccCCCeEEEEEeCC-CcEE
Q 005956 443 ITGIQFSRDESQRIMITSED-SKLR 466 (667)
Q Consensus 443 I~~l~~sp~g~~~l~~~s~d-g~I~ 466 (667)
+..+.+.|.+...++++..+ +.|+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 78899988655566666654 4443
No 374
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=40.59 E-value=4.3e+02 Score=29.53 Aligned_cols=152 Identities=10% Similarity=0.084 Sum_probs=75.2
Q ss_pred cccceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEee-------------CCCcEEEEEEeeCCCCEEEEEecC-
Q 005956 308 HKGDVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFD-------------HHNYVTCVQFNPIDDNYFISGSID- 371 (667)
Q Consensus 308 h~~~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~-------------h~~~V~~l~f~p~d~~~l~sgs~D- 371 (667)
-.+.|.+|.++|.+ .++.+...+.|...+ +.++.-..+. ....|.++++.|.+.+.++.+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999976 666666666554433 2233222221 123589999998555655554421
Q ss_pred ----CeEEEE-ecCCCe---EEEecc-c----CC--ceEEEEEeeC-CCEEEEEecCCcEEEEEecCCcceeeeEe-ecc
Q 005956 372 ----GKVRIW-GVCEKR---VVDWAD-V----RD--VISAICYIPD-GKGFIVGSITGTCHFYKASGNDLKLEKVD-FHD 434 (667)
Q Consensus 372 ----g~v~iw-dl~~~~---~~~~~~-~----~~--~v~~v~~spd-g~~l~~gs~dg~i~l~d~~~~~~~~~~~~-~~~ 434 (667)
....|| ....++ .+.... . .+ ....++++|. ...+++++..+. ||...+.....+.+. +..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~--l~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG--LWRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC--EEEESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc--EEEECCCCcCccccccCcc
Confidence 112333 333333 222110 0 11 1246788874 345555555433 343333322222111 100
Q ss_pred ccCcCCCCeEEEEEccCCCeEEEEEeCCC
Q 005956 435 RKKTSGNKITGIQFSRDESQRIMITSEDS 463 (667)
Q Consensus 435 ~~~~~~~~I~~l~~sp~g~~~l~~~s~dg 463 (667)
.......+..|.+.|.+...++++..++
T Consensus 176 -~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 -SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp -CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred -cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0011235788999887555566666655
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.20 E-value=61 Score=38.65 Aligned_cols=37 Identities=16% Similarity=0.477 Sum_probs=29.9
Q ss_pred ceEEEEecCCC-eEEEEeCCCcEEEEecCCCeEeEEee
Q 005956 311 DVLDLAWSNSN-YLLSCSMDKTVRMWQVGCNQCLNVFD 347 (667)
Q Consensus 311 ~V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~~~~~~~~~ 347 (667)
.+.+++..++. ++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34445555555 89999999999999999999988864
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.62 E-value=2.9e+02 Score=26.97 Aligned_cols=188 Identities=12% Similarity=0.120 Sum_probs=105.0
Q ss_pred eEEEEeCCCcEEEEecCCCeEeE---------EeeCCCcEEEEEEeeCCCCEEEEEecCCeEEEEec---CC------Ce
Q 005956 322 YLLSCSMDKTVRMWQVGCNQCLN---------VFDHHNYVTCVQFNPIDDNYFISGSIDGKVRIWGV---CE------KR 383 (667)
Q Consensus 322 ~l~s~s~Dg~I~iWd~~~~~~~~---------~~~h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl---~~------~~ 383 (667)
.+++.+.+|.|+--.+...+..+ .+...+.+..+.... ....++..+..|.++-+.. .. |.
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67788888888876665432211 123445555555555 5667777788888666543 22 22
Q ss_pred EEE-e--cccCCceEEEEEe---eCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 384 VVD-W--ADVRDVISAICYI---PDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 384 ~~~-~--~~~~~~v~~v~~s---pdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
.+. . ......|.++..- .++.+++..+..|.++-..+........ -+.... .. ....+..+....+ ...+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~-l~-~~d~lv~~~~~~~-~~~i 160 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LV-DGDELIGVDLTSG-EDEV 160 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC-CC-TTCCEEEEEEECT-TCEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE-EC-CCCEEEEEEEeCC-CCEE
Confidence 111 1 1233445555432 3566899999999999988764322111 111000 11 1255555555443 3578
Q ss_pred EEEeCCCcEEEEECCcc---------eeeEEeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 005956 457 MITSEDSKLRILDGVDV---------IHKFKGLPKSGSQMSASFTTTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~~---------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
+..+.+|.+..++..+. ...+.. .....|.++..-.++..|++.+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 88888888888874321 111122 2345677776555667888999999999887754
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=38.36 E-value=4.5e+02 Score=29.16 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=55.7
Q ss_pred ceEEEEecCCC--eEEEEeCCCcEEEEecCCCeEeEEeeC-------CCcEEEEEEeeCCCCEEEEEecCC-------eE
Q 005956 311 DVLDLAWSNSN--YLLSCSMDKTVRMWQVGCNQCLNVFDH-------HNYVTCVQFNPIDDNYFISGSIDG-------KV 374 (667)
Q Consensus 311 ~V~~l~~s~~~--~l~s~s~Dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~d~~~l~sgs~Dg-------~v 374 (667)
.|..|+++|.+ .++.+...+.|..++=....-.....+ ...|.+|+++|.+.+.++.+.... ..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 79999999874 666677666665554332222222221 235999999986656665554211 23
Q ss_pred EEEe-cCCCeE---EEeccc-------CCceEEEEEeeC-CCEEEEEecC
Q 005956 375 RIWG-VCEKRV---VDWADV-------RDVISAICYIPD-GKGFIVGSIT 412 (667)
Q Consensus 375 ~iwd-l~~~~~---~~~~~~-------~~~v~~v~~spd-g~~l~~gs~d 412 (667)
.||- ...++. +..... ...+..++++|. .+.++++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4443 333332 221100 113467899884 4667666633
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.48 E-value=3.1e+02 Score=26.77 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=86.7
Q ss_pred CCCeEEEEeCCCcEEEEecC---CC------eE---eEEeeCCCcEEEEEEeeC--CCCEEEEEecCCeEEEEecCCC--
Q 005956 319 NSNYLLSCSMDKTVRMWQVG---CN------QC---LNVFDHHNYVTCVQFNPI--DDNYFISGSIDGKVRIWGVCEK-- 382 (667)
Q Consensus 319 ~~~~l~s~s~Dg~I~iWd~~---~~------~~---~~~~~h~~~V~~l~f~p~--d~~~l~sgs~Dg~v~iwdl~~~-- 382 (667)
....++..+..|.++-.... .. .. ...+.....|.++...+. ++.+++..+..|.++...+..-
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~ 136 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKA 136 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhc
Confidence 33467777777776665542 11 11 011233445555543321 3567888899999998877432
Q ss_pred -----eEEEecccCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcceee-eEeeccccCcCCCCeEEEEEccCCCeEE
Q 005956 383 -----RVVDWADVRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLKLE-KVDFHDRKKTSGNKITGIQFSRDESQRI 456 (667)
Q Consensus 383 -----~~~~~~~~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~I~~l~~sp~g~~~l 456 (667)
.........+.+..+....+...++..+.+|.+..+....-..... ..............|..+....++ ..+
T Consensus 137 ~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~-~~l 215 (312)
T 1suu_A 137 VKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN-PYL 215 (312)
T ss_dssp ----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC-SEE
T ss_pred cCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC-CeE
Confidence 1111112245566665555567899999999999998864211110 000111111124566776665443 568
Q ss_pred EEEeCCCcEEEEECCc
Q 005956 457 MITSEDSKLRILDGVD 472 (667)
Q Consensus 457 ~~~s~dg~I~iwd~~~ 472 (667)
++.+..|..+..++.+
T Consensus 216 ~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 216 LIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGG
T ss_pred EEEECCCceEEEEHHH
Confidence 8888999988888643
No 379
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=31.46 E-value=5.9e+02 Score=28.39 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=78.8
Q ss_pred CCCcEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeE-EEecc------------cCCceEEEEEee-CCCEEEEEecC-
Q 005956 348 HHNYVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRV-VDWAD------------VRDVISAICYIP-DGKGFIVGSIT- 412 (667)
Q Consensus 348 h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~-~~~~~------------~~~~v~~v~~sp-dg~~l~~gs~d- 412 (667)
....|.+|.++|.+.+.++.+...+.|...+= .++. ..... ....+.+++++| +.+.++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999977788888876676654432 2322 22111 123588999988 34455544321
Q ss_pred ----CcEEEEEecCCcceeeeEeeccccCc-CCCC--eEEEEEccCCCeEEEEEeCCCcEEEE-ECCcceeeEEeCC---
Q 005956 413 ----GTCHFYKASGNDLKLEKVDFHDRKKT-SGNK--ITGIQFSRDESQRIMITSEDSKLRIL-DGVDVIHKFKGLP--- 481 (667)
Q Consensus 413 ----g~i~l~d~~~~~~~~~~~~~~~~~~~-~~~~--I~~l~~sp~g~~~l~~~s~dg~I~iw-d~~~~~~~~~~~~--- 481 (667)
....||...+.....+.+........ .... ...++++|.+...++++...+.|..= |...--.......
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCS
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccC
Confidence 12455555443333333322110000 0111 14688888655566666655444432 2111111111111
Q ss_pred -CCCCeEEEEEcCCC-CEEEEEeCCC
Q 005956 482 -KSGSQMSASFTTTG-KHIISIGDDC 505 (667)
Q Consensus 482 -~~~~v~~v~~spdg-~~l~sgs~Dg 505 (667)
....+..++++|.. ..|+.+..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 12346788888753 3455555554
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.38 E-value=75 Score=35.42 Aligned_cols=38 Identities=11% Similarity=0.321 Sum_probs=30.4
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEecCCCeEeEEeeC
Q 005956 310 GDVLDLAWSNSNYLLSCSMDKTVRMWQVGCNQCLNVFDH 348 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~Dg~I~iWd~~~~~~~~~~~h 348 (667)
..|.++.+ ++.++++-+.|+++|+|++.+++++....-
T Consensus 222 ~~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555554 355999999999999999999999887753
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.21 E-value=91 Score=34.75 Aligned_cols=36 Identities=19% Similarity=0.508 Sum_probs=29.1
Q ss_pred cEEEEEEeeCCCCEEEEEecCCeEEEEecCCCeEEEecc
Q 005956 351 YVTCVQFNPIDDNYFISGSIDGKVRIWGVCEKRVVDWAD 389 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~Dg~v~iwdl~~~~~~~~~~ 389 (667)
.|.++.+ +..++++-+.|+++|+|++.+++++...+
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4665555 57899999999999999999999776443
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=25.08 E-value=5.3e+02 Score=25.78 Aligned_cols=192 Identities=11% Similarity=0.106 Sum_probs=102.1
Q ss_pred eEEEEecCCC-eEEEEeCCCcEEEEecCC------C-----eEeEEee--CCCcEEEEEEeeCCCCEEEEEecCCeEEEE
Q 005956 312 VLDLAWSNSN-YLLSCSMDKTVRMWQVGC------N-----QCLNVFD--HHNYVTCVQFNPIDDNYFISGSIDGKVRIW 377 (667)
Q Consensus 312 V~~l~~s~~~-~l~s~s~Dg~I~iWd~~~------~-----~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs~Dg~v~iw 377 (667)
+..++.+... ..+.-..||.|..|-... + .....+. ....|..++. .....+....+|.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEe
Confidence 3334444433 566667788999995321 1 1111111 2235766666 44566666789999999
Q ss_pred ecCC-Ce-----------EEEecc-cCCceEEEEEeeCCCEEEEEecCCcEEEEEecCCcce--------eeeEeecccc
Q 005956 378 GVCE-KR-----------VVDWAD-VRDVISAICYIPDGKGFIVGSITGTCHFYKASGNDLK--------LEKVDFHDRK 436 (667)
Q Consensus 378 dl~~-~~-----------~~~~~~-~~~~v~~v~~spdg~~l~~gs~dg~i~l~d~~~~~~~--------~~~~~~~~~~ 436 (667)
-... ++ +..... ....|..++......+.++-..+|.+..|-....... .....+..
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-- 261 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-- 261 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG--
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc--
Confidence 6532 11 111111 1234556655443356677788999998865421110 00111111
Q ss_pred CcCCCCeEEEEEccCCCeEEEEEeCCCcEEEEECCcc----------eeeEEeC--CCCCCeEEEEEcCCCCEEEEEeCC
Q 005956 437 KTSGNKITGIQFSRDESQRIMITSEDSKLRILDGVDV----------IHKFKGL--PKSGSQMSASFTTTGKHIISIGDD 504 (667)
Q Consensus 437 ~~~~~~I~~l~~sp~g~~~l~~~s~dg~I~iwd~~~~----------~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~D 504 (667)
.....|..++... .+.++-..+|.|+.|-.... ....... .....|..++.. ..+.+....|
T Consensus 262 -~~~~~v~~v~~G~---~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~ 335 (389)
T 3kci_A 262 -LTGLGVVKVECGS---QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTED 335 (389)
T ss_dssp -GTTSCEEEEEEET---TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETT
T ss_pred -cCCCcEEEEeCCC---CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCC
Confidence 1123577776654 35666678999999964311 1111111 122346666553 3455666789
Q ss_pred CcEEEEEcCC
Q 005956 505 CRVYVWNYDE 514 (667)
Q Consensus 505 g~I~iWd~~~ 514 (667)
|.|+.|-...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999998754
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=21.61 E-value=6.4e+02 Score=25.48 Aligned_cols=143 Identities=10% Similarity=0.106 Sum_probs=76.3
Q ss_pred CeEEEEecCCC--eEEEecc-------cCCceEEEEEe---eC----CCEEEEEe-cCCcEEEEEecCCcceeeeE----
Q 005956 372 GKVRIWGVCEK--RVVDWAD-------VRDVISAICYI---PD----GKGFIVGS-ITGTCHFYKASGNDLKLEKV---- 430 (667)
Q Consensus 372 g~v~iwdl~~~--~~~~~~~-------~~~~v~~v~~s---pd----g~~l~~gs-~dg~i~l~d~~~~~~~~~~~---- 430 (667)
.+|.+||+.+. ++++... ....+..+.+. |+ +.++.+.. ..+-|.+||+.+++.-...-
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35777777777 6654222 23457778777 22 22333333 35689999998765432210
Q ss_pred -------eeccccCcCCCCeEEEEEccC---CCeEEEEEeCCC-cEEEEEC---C--cceee--EEeCCC-CCCeEEEEE
Q 005956 431 -------DFHDRKKTSGNKITGIQFSRD---ESQRIMITSEDS-KLRILDG---V--DVIHK--FKGLPK-SGSQMSASF 491 (667)
Q Consensus 431 -------~~~~~~~~~~~~I~~l~~sp~---g~~~l~~~s~dg-~I~iwd~---~--~~~~~--~~~~~~-~~~v~~v~~ 491 (667)
...+....-...|..|+++|+ |.+.|.-+.-.+ .++-... + ..... ..+... ......+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 001100001246888999987 124455444333 3443331 1 11111 122211 234456677
Q ss_pred c-CCCCEEEEEeCCCcEEEEEcCC
Q 005956 492 T-TTGKHIISIGDDCRVYVWNYDE 514 (667)
Q Consensus 492 s-pdg~~l~sgs~Dg~I~iWd~~~ 514 (667)
. .+|..+++--+.+.|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 6777777777888999999876
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=20.81 E-value=2.9e+02 Score=29.86 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=42.8
Q ss_pred cEEEEEEeeCCCCEEEEEec------------CCeEEEEecCCCeEEEecc--cCCceEEEEEeeCCCEEEEEec
Q 005956 351 YVTCVQFNPIDDNYFISGSI------------DGKVRIWGVCEKRVVDWAD--VRDVISAICYIPDGKGFIVGSI 411 (667)
Q Consensus 351 ~V~~l~f~p~d~~~l~sgs~------------Dg~v~iwdl~~~~~~~~~~--~~~~v~~v~~spdg~~l~~gs~ 411 (667)
....|.|.+ ++.+.+.... ...|..++..++++..+.. ....++.++|+||++.|.+.-+
T Consensus 477 sPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 456789998 7877773321 1257777887888766543 2456899999999999888654
No 385
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.11 E-value=2.3e+02 Score=30.72 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=40.8
Q ss_pred EEEEEEeeCCCCEEEEEecC------------CeEEEEecCCCeEEEec--ccCCceEEEEEeeCCCEEEEEe
Q 005956 352 VTCVQFNPIDDNYFISGSID------------GKVRIWGVCEKRVVDWA--DVRDVISAICYIPDGKGFIVGS 410 (667)
Q Consensus 352 V~~l~f~p~d~~~l~sgs~D------------g~v~iwdl~~~~~~~~~--~~~~~v~~v~~spdg~~l~~gs 410 (667)
.=.|.|.| .+++++.-..+ ..+.+.+..++++..+. .....++.++|+||++.|++.-
T Consensus 478 PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 35688999 88866654322 23566677777776543 3456799999999999888764
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=20.06 E-value=3.4e+02 Score=29.36 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred cceEEEEecCCCeEEEEeCC-------------CcEEEEecCCCeEeEEee--CCCcEEEEEEeeCCCCEEEEEe
Q 005956 310 GDVLDLAWSNSNYLLSCSMD-------------KTVRMWQVGCNQCLNVFD--HHNYVTCVQFNPIDDNYFISGS 369 (667)
Q Consensus 310 ~~V~~l~~s~~~~l~s~s~D-------------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~d~~~l~sgs 369 (667)
.....|.|.++|.|..+..- ..|..++..+++....+. ....++.++|+| |++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEEE
Confidence 45678999999944442221 146666777777766554 346799999999 888777654
Done!