BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005959
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 251 LAGVRTILDIGCGYGSF--------GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM 302
+ G+R I+D+GCG+G F +++ +L +A A+G +T ER
Sbjct: 42 VGGLR-IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERA---- 96
Query: 303 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS--PLTNP 360
+L P SFD+ + + + + + L V + L PGG+FV+++ P+
Sbjct: 97 ----DLDKLHLPQDSFDLAYSS-LALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYXA 151
Query: 361 QA---FLRNKENQKRWNFVRDFVEN 382
A + + E ++ W R VE
Sbjct: 152 PARPGWAIDAEGRRTWPIDRYLVEG 176
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 315
+LDIGCG G + H F+ L + + S ++ +R +S +LP+
Sbjct: 88 AVLDIGCGEGYY-THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSD 146
Query: 316 LSFDMLH--CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356
S D + A C + E+ RV+KPGG+ + +P
Sbjct: 147 TSXDAIIRIYAPCKAE----------ELARVVKPGGWVITATP 179
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 257 ILDIGCGYGSFGAHLFSK-------ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK 309
ILDIGCG G L SK ++ + I E + L + G A +
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 310 QLPYPSLSFD--MLHCARCGVDWDQKDGILLLEVDRVLKPGGYF 351
L + SFD ++ V ++ ++ EV RVLKPG Y
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV-----QLTLERG----LPAMIGSFA 307
+LD+GCG G +G + S+ Y+A G + Q ERG L + G +
Sbjct: 57 VLDVGCGDG-YGTYKLSR-------TGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLS 108
Query: 308 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGY 350
S LP+ + F+ + ++W ++ L E+ RVLK GY
Sbjct: 109 S--LPFENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGY 148
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 529 FNSALLEKGKSVWVMNVVPTIG----TNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVH 584
F + L EK K V V+++ T+G + + + VL D C++ P YP L+
Sbjct: 162 FKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID 221
Query: 585 AEGLLSLESGHR 596
+ L++ SGH+
Sbjct: 222 CDWLVA--SGHK 231
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 520 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPT 575
LD+ A +GG L+ K G S+ +N+ P + G + V + P
Sbjct: 87 LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146
Query: 576 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 625
+YD + ++ H L +F E R+L+P G I D +
Sbjct: 147 EDNSYDFIWSQ------DAFLHSPDKLKVFQECARVLKPRGVXAITDPXK 190
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-----SFA-SKQ 310
+LD+GCG G L + + + S QV R A + S+A +
Sbjct: 65 VLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXD 122
Query: 311 LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGY-----FVWTSPL 357
LP+ SFD + + G L E RVL+PGG FV +P+
Sbjct: 123 LPFEDASFDAVWALES-LHHXPDRGRALREXARVLRPGGTVAIADFVLLAPV 173
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS 317
++IG G G F L K E S ++ +RG+ + G+ + L S
Sbjct: 52 VEIGVGTGRFAVPLKIK-------IGVEPSERXAEIARKRGVFVLKGTAENLPLKDESFD 104
Query: 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-----RNKENQKR 372
F + C VD ++ L E R+LK GGY + + + ++FL +NKE
Sbjct: 105 FALXVTTICFVDDPER---ALKEAYRILKKGGYLI--VGIVDRESFLGREYEKNKEKSVF 159
Query: 373 WNFVRDF 379
+ R F
Sbjct: 160 YKNARFF 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,904,191
Number of Sequences: 62578
Number of extensions: 901031
Number of successful extensions: 1576
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 14
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)